WorldWideScience

Sample records for largest phylogenetic repository

  1. Global patterns of amphibian phylogenetic diversity

    DEFF Research Database (Denmark)

    Fritz, Susanne; Rahbek, Carsten

    2012-01-01

    Aim  Phylogenetic diversity can provide insight into how evolutionary processes may have shaped contemporary patterns of species richness. Here, we aim to test for the influence of phylogenetic history on global patterns of amphibian species richness, and to identify areas where macroevolutionary...... processes such as diversification and dispersal have left strong signatures on contemporary species richness. Location  Global; equal-area grid cells of approximately 10,000 km2. Methods  We generated an amphibian global supertree (6111 species) and repeated analyses with the largest available molecular...... phylogeny (2792 species). We combined each tree with global species distributions to map four indices of phylogenetic diversity. To investigate congruence between global spatial patterns of amphibian species richness and phylogenetic diversity, we selected Faith’s phylogenetic diversity (PD) index...

  2. DendroPy: a Python library for phylogenetic computing.

    Science.gov (United States)

    Sukumaran, Jeet; Holder, Mark T

    2010-06-15

    DendroPy is a cross-platform library for the Python programming language that provides for object-oriented reading, writing, simulation and manipulation of phylogenetic data, with an emphasis on phylogenetic tree operations. DendroPy uses a splits-hash mapping to perform rapid calculations of tree distances, similarities and shape under various metrics. It contains rich simulation routines to generate trees under a number of different phylogenetic and coalescent models. DendroPy's data simulation and manipulation facilities, in conjunction with its support of a broad range of phylogenetic data formats (NEXUS, Newick, PHYLIP, FASTA, NeXML, etc.), allow it to serve a useful role in various phyloinformatics and phylogeographic pipelines. The stable release of the library is available for download and automated installation through the Python Package Index site (http://pypi.python.org/pypi/DendroPy), while the active development source code repository is available to the public from GitHub (http://github.com/jeetsukumaran/DendroPy).

  3. Foreign materials in the repository - update of estimated quantities

    International Nuclear Information System (INIS)

    Hagros, A.

    2007-03-01

    In a repository for spent nuclear fuel, a variety of materials are used during the construction process and during the operation of the repository. In addition to materials necessary for the construction and operation, some materials may be transported into the repository through the ventilation air, as emissions from vehicles, as waste produced by the staff etc. Both of these two types of materials are considered here and their quantities - both the introduced quantities and the quantities that remain after closure - in the repository constructed at Olkiluoto in Eurajoki, Finland are estimated here based on new information. This work is intended to update the estimations that have been made previously, and it takes advantage of the experience collected during the construction of the underground rock characterisation facility ONKALO at Olkiluoto. During this construction process, the quantities of the different construction materials introduced into the underground openings have been monitored and they form a basis for estimating the quantities to be used in the future. The estimations made in this report are specific to a KBS-3V type repository and to the Olkiluoto site, although in some cases more generic information has been used, particularly when the relevant quantities have not been monitored in the ONKALO. The estimations are based on the new repository layout produced in 2006 and consider the latest plans for grouting and rock support. As these plans are generally not final yet, several different alternative plans are assumed when necessary. Also two different strategies for the backfilling of the tunnels are considered. The most significant differences with respect to the results of an earlier estimation are related to the materials used in grouting, shotcreting and in support bolts. In the cases where a mixture of bentonite and crushed rock is the used backfill alternative, gypsum and cement are the materials with the largest quantities remaining in the

  4. Discovery of the largest orbweaving spider species: the evolution of gigantism in Nephila.

    Science.gov (United States)

    Kuntner, Matjaz; Coddington, Jonathan A

    2009-10-21

    More than 41,000 spider species are known with about 400-500 added each year, but for some well-known groups, such as the giant golden orbweavers, Nephila, the last valid described species dates from the 19(th) century. Nephila are renowned for being the largest web-spinning spiders, making the largest orb webs, and are model organisms for the study of extreme sexual size dimorphism (SSD) and sexual biology. Here, we report on the discovery of a new, giant Nephila species from Africa and Madagascar, and review size evolution and SSD in Nephilidae. We formally describe N. komaci sp. nov., the largest web spinning species known, and place the species in phylogenetic context to reconstruct the evolution of mean size (via squared change parsimony). We then test female and male mean size correlation using phylogenetically independent contrasts, and simulate nephilid body size evolution using Monte Carlo statistics. Nephila females increased in size almost monotonically to establish a mostly African clade of true giants. In contrast, Nephila male size is effectively decoupled and hovers around values roughly one fifth of female size. Although N. komaci females are the largest Nephila yet discovered, the males are also large and thus their SSD is not exceptional.

  5. Discovery of the largest orbweaving spider species: the evolution of gigantism in Nephila.

    Directory of Open Access Journals (Sweden)

    Matjaz Kuntner

    2009-10-01

    Full Text Available More than 41,000 spider species are known with about 400-500 added each year, but for some well-known groups, such as the giant golden orbweavers, Nephila, the last valid described species dates from the 19(th century. Nephila are renowned for being the largest web-spinning spiders, making the largest orb webs, and are model organisms for the study of extreme sexual size dimorphism (SSD and sexual biology. Here, we report on the discovery of a new, giant Nephila species from Africa and Madagascar, and review size evolution and SSD in Nephilidae.We formally describe N. komaci sp. nov., the largest web spinning species known, and place the species in phylogenetic context to reconstruct the evolution of mean size (via squared change parsimony. We then test female and male mean size correlation using phylogenetically independent contrasts, and simulate nephilid body size evolution using Monte Carlo statistics.Nephila females increased in size almost monotonically to establish a mostly African clade of true giants. In contrast, Nephila male size is effectively decoupled and hovers around values roughly one fifth of female size. Although N. komaci females are the largest Nephila yet discovered, the males are also large and thus their SSD is not exceptional.

  6. Principal organic materials in a repository for spent nuclear fuel

    International Nuclear Information System (INIS)

    Hallbeck, Lotta

    2010-01-01

    The largest pool of organic material in a repository at closure is the organic material in the bentonite in buffer and backfill. It is impossible to make any assumptions as to how much of this material will be available for biodegradation, since the character of the material is unknown. However, it is unlikely that this organic material can dissolve in groundwater unless the bentonite loses its swelling capacity. The second largest pool will be the biofilms formed on the rock surfaces. This assumption presupposes that no cleaning is undertaken before repository closure. The third largest pool is the organic material produced by microorganisms using hydrogen from the anaerobic corrosion of iron in steel as an energy source. The following provides summary descriptions of the different pools of organic material that will remain in the repository: 1. Microorganisms. Their effect would mainly be to reduce the redox potential soon after repository closure. They may contribute to the depletion of the oxygen entrapped during repository construction, an effect that would not jeopardise repository stability. If the dominant microorganisms in the anaerobic environment are sulphate-reducing bacteria, oxidation of organic material would lead to the formation of HS - . The produced sulphide could corrode the copper canisters under anaerobic conditions if it reaches them. Another effect of microorganisms would be to increase the complexing capacity of the groundwater due to excreted metabolites. The impact of these compounds is not yet clear, although it will surely not be very important, due to the small amounts of such substances. 2. Materials in the ventilation air. Their effect will probably be to help maintain reducing conditions in the area, although this effect will likely be minimal or negligible. 3. Construction materials. Among these materials, we emphasise the organic materials present in concrete, asphalt, bentonite, and wood. Hydrocarbons from asphalt may help reduce

  7. Principal organic materials in a repository for spent nuclear fuel

    Energy Technology Data Exchange (ETDEWEB)

    Hallbeck, Lotta (Microbial Analytics Sweden AB, Moelnlycke (Sweden))

    2010-01-15

    The largest pool of organic material in a repository at closure is the organic material in the bentonite in buffer and backfill. It is impossible to make any assumptions as to how much of this material will be available for biodegradation, since the character of the material is unknown. However, it is unlikely that this organic material can dissolve in groundwater unless the bentonite loses its swelling capacity. The second largest pool will be the biofilms formed on the rock surfaces. This assumption presupposes that no cleaning is undertaken before repository closure. The third largest pool is the organic material produced by microorganisms using hydrogen from the anaerobic corrosion of iron in steel as an energy source. The following provides summary descriptions of the different pools of organic material that will remain in the repository: 1. Microorganisms. Their effect would mainly be to reduce the redox potential soon after repository closure. They may contribute to the depletion of the oxygen entrapped during repository construction, an effect that would not jeopardise repository stability. If the dominant microorganisms in the anaerobic environment are sulphate-reducing bacteria, oxidation of organic material would lead to the formation of HS-. The produced sulphide could corrode the copper canisters under anaerobic conditions if it reaches them. Another effect of microorganisms would be to increase the complexing capacity of the groundwater due to excreted metabolites. The impact of these compounds is not yet clear, although it will surely not be very important, due to the small amounts of such substances. 2. Materials in the ventilation air. Their effect will probably be to help maintain reducing conditions in the area, although this effect will likely be minimal or negligible. 3. Construction materials. Among these materials, we emphasise the organic materials present in concrete, asphalt, bentonite, and wood. Hydrocarbons from asphalt may help reduce

  8. Morphological characterization and phylogenetic distance among ...

    African Journals Online (AJOL)

    The genetic diversity was calculated with Nei and Li's index, and the phylogenetic tree (dendrogram) was generated with a neighbor-joining program. The dendrogram indicates the diversity of the genotypes, which are grouped into three distinctive large groups. The largest group includes species from the Mediolobivia and ...

  9. INIS: Nuclear Grey Literature Repository

    International Nuclear Information System (INIS)

    Savić, Dobrica

    2016-01-01

    As one of the world's largest collections of published information on the peaceful uses of nuclear science and technology, INIS represents an extraordinary example of world cooperation. Currently, as INIS members, 130 countries and 24 international organizations share and allow access to their valuable nuclear information resources, preserving them for future generations and offering a freely available nuclear knowledge repository. Since its creation in 1970, INIS has collected and provided access to more than 3.8 million bibliographic references to publications, documents, technical reports, non-copyrighted documentation, and other grey literature, as well as over a million full texts. Public interest throughout the years in accessing the INIS Collection has been remarkable. This paper deals with the challenges faced by INIS in its endeavour to increase the use, accessibility, usability and expandability of its on-line repository. It also describes document collection, the features and characteristics of implementing a new search engine, as well as the lessons learned. (author)

  10. What Factors Influence Where Researchers Deposit their Data? A Survey of Researchers Submitting to Data Repositories

    Directory of Open Access Journals (Sweden)

    Shea Swauger

    2015-02-01

    Full Text Available In order to better understand the factors that most influence where researchers deposit their data when they have a choice, we collected survey data from researchers who deposited phylogenetic data in either the TreeBASE or Dryad data repositories. Respondents were asked to rank the relative importance of eight possible factors. We found that factors differed in importance for both TreeBASE and Dryad, and that the rankings differed subtly but significantly between TreeBASE and Dryad users. On average, TreeBASE users ranked the domain specialization of the repository highest, while Dryad users ranked as equal highest their trust in the persistence of the repository and the ease of its data submission process. Interestingly, respondents (particularly Dryad users were strongly divided as to whether being directed to choose a particular repository by a journal policy or funding agency was among the most or least important factors. Some users reported depositing their data in multiple repositories and archiving their data voluntarily.

  11. Banking Umbilical Cord Blood (UCB) Stem Cells: Awareness, Attitude and Expectations of Potential Donors from One of the Largest Potential Repository (India).

    Science.gov (United States)

    Pandey, Deeksha; Kaur, Simar; Kamath, Asha

    2016-01-01

    The concept of Umbilical Cord blood (UCB) stem cells is emerging as a non-invasive, efficacious alternative source of hematopoietic stem cells to treat a variety of blood and bone marrow diseases, blood cancers, metabolic disorders and immune deficiencies. Aim of the present study was to determine the level of awareness about banking UCB among pregnant women in India. We also assessed patient perception for banking of UCB and explored the patient expectations of banking UCB in future. This is the first study to assess current attitudes, in a sample population of potential donors from one of the largest potential UCB repository (India). Obtaining this information may help optimize recruitment efforts and improve patient education. Present explorative questionnaire based survey included 254 pregnant women in the final analysis. We established only 26.5% pregnant women in our study population knew what exactly is meant by UCB. A large proportion (55.1%) was undecided on whether they want to bank UCB or not. Women were more aware of the more advertised private cord blood banking compared to public banking. More than half of the pregnant women expected their obstetrician to inform them regarding UCB. One-third of the women in our population had undue expectations from banking of the UCB. Obstetricians should play a more active role in explaining the patients regarding pros and cons of UCB banking.

  12. Banking Umbilical Cord Blood (UCB Stem Cells: Awareness, Attitude and Expectations of Potential Donors from One of the Largest Potential Repository (India.

    Directory of Open Access Journals (Sweden)

    Deeksha Pandey

    Full Text Available The concept of Umbilical Cord blood (UCB stem cells is emerging as a non-invasive, efficacious alternative source of hematopoietic stem cells to treat a variety of blood and bone marrow diseases, blood cancers, metabolic disorders and immune deficiencies. Aim of the present study was to determine the level of awareness about banking UCB among pregnant women in India. We also assessed patient perception for banking of UCB and explored the patient expectations of banking UCB in future. This is the first study to assess current attitudes, in a sample population of potential donors from one of the largest potential UCB repository (India. Obtaining this information may help optimize recruitment efforts and improve patient education.Present explorative questionnaire based survey included 254 pregnant women in the final analysis.We established only 26.5% pregnant women in our study population knew what exactly is meant by UCB. A large proportion (55.1% was undecided on whether they want to bank UCB or not. Women were more aware of the more advertised private cord blood banking compared to public banking. More than half of the pregnant women expected their obstetrician to inform them regarding UCB. One-third of the women in our population had undue expectations from banking of the UCB.Obstetricians should play a more active role in explaining the patients regarding pros and cons of UCB banking.

  13. Parachorius semsanganus sp. n. from Laos, the Asian’s largest Canthonini of special phylogenetic significance

    Directory of Open Access Journals (Sweden)

    Sergey Tarasov

    2011-06-01

    Full Text Available The new species Parachorius semsanganus sp. n. is described from Laos. This enigmatic Oriental deltochiline represents a “morphological link” between Parachorius and Cassolus by sharing characters of the two genera. The fact that P. semsanganus cannot be unequivocally placed in either of these two genera stresses some more general problems of the current classification of Parachorius and Cassolus. Such problems can be solved only in the course of phylogenetic analysis, the need of which is briefly outlined.

  14. SemanticOrganizer: A Customizable Semantic Repository for Distributed NASA Project Teams

    Science.gov (United States)

    Keller, Richard M.; Berrios, Daniel C.; Carvalho, Robert E.; Hall, David R.; Rich, Stephen J.; Sturken, Ian B.; Swanson, Keith J.; Wolfe, Shawn R.

    2004-01-01

    SemanticOrganizer is a collaborative knowledge management system designed to support distributed NASA projects, including diverse teams of scientists, engineers, and accident investigators. The system provides a customizable, semantically structured information repository that stores work products relevant to multiple projects of differing types. SemanticOrganizer is one of the earliest and largest semantic web applications deployed at NASA to date, and has been used in diverse contexts ranging from the investigation of Space Shuttle Columbia's accident to the search for life on other planets. Although the underlying repository employs a single unified ontology, access control and ontology customization mechanisms make the repository contents appear different for each project team. This paper describes SemanticOrganizer, its customization facilities, and a sampling of its applications. The paper also summarizes some key lessons learned from building and fielding a successful semantic web application across a wide-ranging set of domains with diverse users.

  15. Impact of repository depth on residence times for leaking radionuclides in land-based surface water

    Science.gov (United States)

    Wörman, Anders; Marklund, Lars; Xu, Shulan; Dverstorp, Björn

    2007-03-01

    The multiple scales of landscape topography produce a wide distribution of groundwater circulation cells that control the hydro-geological environments surrounding geological repositories for nuclear waste. The largest circulation cells tend to discharge water into major river reaches, large freshwater systems or the nearby Baltic Sea. We investigated numerically the release of radionuclides from repositories placed in bedrock with depths between 100 to 2000 meters in a Swedish coastal area and found that leakage from the deeper positions emerges primarily in the major aquatic systems. In effect, radionuclides from the deeper repositories are more rapidly transported towards the Sea by the stream system compared to leakage from more shallow repositories. The release from the shallower repositories is significantly retained in the initial stage of the transport in the (superficial) landscape because the discharge occurs in or near low-order streams with high retention characteristics. This retention and residence time for radioactivity in the landscape control radiological doses to biota and can, thus, be expected to constitute an essential part of an associated risk evaluation.

  16. phylo-node: A molecular phylogenetic toolkit using Node.js.

    Science.gov (United States)

    O'Halloran, Damien M

    2017-01-01

    Node.js is an open-source and cross-platform environment that provides a JavaScript codebase for back-end server-side applications. JavaScript has been used to develop very fast and user-friendly front-end tools for bioinformatic and phylogenetic analyses. However, no such toolkits are available using Node.js to conduct comprehensive molecular phylogenetic analysis. To address this problem, I have developed, phylo-node, which was developed using Node.js and provides a stable and scalable toolkit that allows the user to perform diverse molecular and phylogenetic tasks. phylo-node can execute the analysis and process the resulting outputs from a suite of software options that provides tools for read processing and genome alignment, sequence retrieval, multiple sequence alignment, primer design, evolutionary modeling, and phylogeny reconstruction. Furthermore, phylo-node enables the user to deploy server dependent applications, and also provides simple integration and interoperation with other Node modules and languages using Node inheritance patterns, and a customized piping module to support the production of diverse pipelines. phylo-node is open-source and freely available to all users without sign-up or login requirements. All source code and user guidelines are openly available at the GitHub repository: https://github.com/dohalloran/phylo-node.

  17. Site selection for deep geologic repositories - Consequences for society, economy and environment

    International Nuclear Information System (INIS)

    2010-03-01

    In a few years, Switzerland will make the decision regarding site selection for geological underground repositories for the storage of radioactive wastes. Besides the safety issue, many citizens are interested in how such a repository will affect environment, economy and society in the selected site's region. This brochure summarizes the results of many studies on the socio-economic impacts of nuclear waste repositories. Radioactive wastes must be stored in such a way that mankind and environment are safely protected for a long period of time. How this goal may be achieved, is already known: geologic deep repositories warrant long-term safety. For the oncoming years in Switzerland the question is where the repository will be built. The search for an appropriate site for a repository in the proposed regions will launch discussions. Within the participative framework the regions may bring their requests. The demonstration of the safety of potential repository sites has the highest priority in the selection process. In the third procedural step additional rock investigations will be made. The socio-economic studies and the experience with existing plants show that radioactive waste management plants can be built and operated in good agreement with environmental requirements. The radioactive wastes in a deep underground repository are stored many hundred meters below the Earth's surface. There, they are isolated from our vital space. Technical barriers and the surrounding dense rock confinement prevent the release of radioactive materials into the environment. A deep repository has positive consequences for the regional economy. It increases trade and value creation and creates work places. The socio-economic impacts practically extend over one century, but strongly vary with time; they are the largest during the building period. High life quality and a positive population development in the selected site region are compatible with a deep repository. A fair and

  18. Shale as a radioactive waste repository: the importance of vermiculite

    Energy Technology Data Exchange (ETDEWEB)

    Komarneni, S; Roy, D M; Pennsylvania State Univ., University Park; USA). Materials Research Labs.)

    1979-01-01

    Cesium sorption and fixation properties of thirty shale minerals and shales were investigated in search of a criterion for the suitability of shales for a radioactive waste repository. Shales and illites containing vermiculite fixed the largest proportion of total Cs sorbed (up to 91%) against displacement with 0.1 N KCl. For example, a slate sample fixed 33% of the total Cs sorbed while its weathered counterpart in which chlorite had altered to vermiculite fixed 89% of the total Cs sorbed. Since Cs is one of the most soluble and hazardous radioactive ions, its containment is of great importance in safe radioactive waste disposal. Presence of vermiculite in a shale body may therefore, serve as one criterion in the selection of a suitable shale for radioactive waste disposal if and when shales in geologically stable areas are selected for repositories.

  19. Phylogenetic diversity and biodiversity indices on phylogenetic networks.

    Science.gov (United States)

    Wicke, Kristina; Fischer, Mareike

    2018-04-01

    In biodiversity conservation it is often necessary to prioritize the species to conserve. Existing approaches to prioritization, e.g. the Fair Proportion Index and the Shapley Value, are based on phylogenetic trees and rank species according to their contribution to overall phylogenetic diversity. However, in many cases evolution is not treelike and thus, phylogenetic networks have been developed as a generalization of phylogenetic trees, allowing for the representation of non-treelike evolutionary events, such as hybridization. Here, we extend the concepts of phylogenetic diversity and phylogenetic diversity indices from phylogenetic trees to phylogenetic networks. On the one hand, we consider the treelike content of a phylogenetic network, e.g. the (multi)set of phylogenetic trees displayed by a network and the so-called lowest stable ancestor tree associated with it. On the other hand, we derive the phylogenetic diversity of subsets of taxa and biodiversity indices directly from the internal structure of the network. We consider both approaches that are independent of so-called inheritance probabilities as well as approaches that explicitly incorporate these probabilities. Furthermore, we introduce our software package NetDiversity, which is implemented in Perl and allows for the calculation of all generalized measures of phylogenetic diversity and generalized phylogenetic diversity indices established in this note that are independent of inheritance probabilities. We apply our methods to a phylogenetic network representing the evolutionary relationships among swordtails and platyfishes (Xiphophorus: Poeciliidae), a group of species characterized by widespread hybridization. Copyright © 2018 Elsevier Inc. All rights reserved.

  20. Learning Object Repositories

    Science.gov (United States)

    Lehman, Rosemary

    2007-01-01

    This chapter looks at the development and nature of learning objects, meta-tagging standards and taxonomies, learning object repositories, learning object repository characteristics, and types of learning object repositories, with type examples. (Contains 1 table.)

  1. Repository Rodeo Redux

    CERN Document Server

    Anez, Melissa; Donohue, Tim; Fyson, Will; Simko, Tibor; Wilcox, David

    2017-01-01

    You’ve got more repository questions and we’ve got more answers! Last year’s Repository Rodeo panel was a huge success, so we’re taking the show on the road to Brisbane for OR2017. Join representatives from the DSpace, Eprints, Fedora, Hydra, and Islandora communities as we (briefly) explain what each of our repositories actually does. We'll also talk about the directions of our respective technical and community developments, and related to the conference theme of Open: Innovation Knowledge Repositories, offer brief observations about the latest, most promising and/or most surprising innovations in our space. This panel will be a great opportunity for newcomers to Open Repositories to get a crash course on the major repository options and meet representatives from each of their communities. After a brief presentation from each representative, we'll open the session up for questions from the audience.

  2. Phylogenetics and diversification of morning glories (tribe ipomoeeae, convolvulaceae) based on whole plastome sequences

    Science.gov (United States)

    Phylogenetic studies have demonstrated the largest morning glory genus, Ipomoea, is not monophyletic, and nine other segregate genera are derived from within Ipomoea. Therefore, systematic research is focused on the monophyletic tribe Ipomoeeae (c. 650-900 species). We used whole plastid genomes to ...

  3. EEI/UWASTE oversight of the DOE Repository Program by the Repository Information Exchange Team

    International Nuclear Information System (INIS)

    Henkel, C.J.; Supko, E.M.; Schwartz, M.H.

    1993-01-01

    The Utility Nuclear Waste and Transportation Program of the Edison Electric Institute (EEI/UWASTE) has conducted reviews of the US DOE's repository program through its Repository Information Exchange Team (RIET or Team). Eight such reviews have been conducted since 1985 covering topics that include repository program management and control; repository schedule; repository budget; quality assurance; site characterization; repository licensing; environmental issues; and institutional and public information activities. The utility industry has used these repository program reviews as a forum for providing DOE's Office of Civilian Radioactive Waste Management (OCRWM) with comments on the direction of the repository program, advice for future actions regarding quality assurance activities and repository licensing, and suggestions for management and control of the Repository Program. The most significant recommendations made by the utility industry through the RIET are discussed along with any subsequent action by OCRWM in response to or subsequent to utility industry recommendations. The process used by the RIET to develop its recommendations to OCRWM regarding the repository program is also discussed

  4. Estimation of mean time to failure of a near surface radioactive waste repository for PWR power stations

    International Nuclear Information System (INIS)

    Aguiar, Lais A. de; Frutuoso e Melo, P.F.; Alvim, Antonio C.M.

    2007-01-01

    This work aims at estimating the mean time to failure (MTTF) of each barrier of a near surface radioactive waste repository. It is assumed that surface water infiltrates through the barriers, reaching the matrix where radionuclides are contained, releasing them to the environment. Radioactive wastes considered in this work are low and medium level wastes (produced during operation of a PWR nuclear power station) fixed on cement. The repository consists of 6 saturated porous media barriers (top cover, upper layer, packages, basis, repository walls and geosphere). It has been verified that the mean time to failure (MTTF) of each barrier increases for radionuclides having higher retardation factor (Fr) and also that the MTTF for concrete is larger for Nickel , while for the geosphere, Plutonium gives the largest MTTF. (author)

  5. Unrealistic phylogenetic trees may improve phylogenetic footprinting.

    Science.gov (United States)

    Nettling, Martin; Treutler, Hendrik; Cerquides, Jesus; Grosse, Ivo

    2017-06-01

    The computational investigation of DNA binding motifs from binding sites is one of the classic tasks in bioinformatics and a prerequisite for understanding gene regulation as a whole. Due to the development of sequencing technologies and the increasing number of available genomes, approaches based on phylogenetic footprinting become increasingly attractive. Phylogenetic footprinting requires phylogenetic trees with attached substitution probabilities for quantifying the evolution of binding sites, but these trees and substitution probabilities are typically not known and cannot be estimated easily. Here, we investigate the influence of phylogenetic trees with different substitution probabilities on the classification performance of phylogenetic footprinting using synthetic and real data. For synthetic data we find that the classification performance is highest when the substitution probability used for phylogenetic footprinting is similar to that used for data generation. For real data, however, we typically find that the classification performance of phylogenetic footprinting surprisingly increases with increasing substitution probabilities and is often highest for unrealistically high substitution probabilities close to one. This finding suggests that choosing realistic model assumptions might not always yield optimal predictions in general and that choosing unrealistically high substitution probabilities close to one might actually improve the classification performance of phylogenetic footprinting. The proposed PF is implemented in JAVA and can be downloaded from https://github.com/mgledi/PhyFoo. : martin.nettling@informatik.uni-halle.de. Supplementary data are available at Bioinformatics online. © The Author 2017. Published by Oxford University Press.

  6. Phylogenetic impoverishment of Amazonian tree communities in an experimentally fragmented forest landscape.

    Science.gov (United States)

    Santos, Bráulio A; Tabarelli, Marcelo; Melo, Felipe P L; Camargo, José L C; Andrade, Ana; Laurance, Susan G; Laurance, William F

    2014-01-01

    Amazonian rainforests sustain some of the richest tree communities on Earth, but their ecological and evolutionary responses to human threats remain poorly known. We used one of the largest experimental datasets currently available on tree dynamics in fragmented tropical forests and a recent phylogeny of angiosperms to test whether tree communities have lost phylogenetic diversity since their isolation about two decades previously. Our findings revealed an overall trend toward phylogenetic impoverishment across the experimentally fragmented landscape, irrespective of whether tree communities were in 1-ha, 10-ha, or 100-ha forest fragments, near forest edges, or in continuous forest. The magnitude of the phylogenetic diversity loss was low (phylogenetic diversity, we observed a significant decrease of 50% in phylogenetic dispersion since forest isolation, irrespective of plot location. Analyses based on tree genera that have significantly increased (28 genera) or declined (31 genera) in abundance and basal area in the landscape revealed that increasing genera are more phylogenetically related than decreasing ones. Also, the loss of phylogenetic diversity was greater in tree communities where increasing genera proliferated and decreasing genera reduced their importance values, suggesting that this taxonomic replacement is partially underlying the phylogenetic impoverishment at the landscape scale. This finding has clear implications for the current debate about the role human-modified landscapes play in sustaining biodiversity persistence and key ecosystem services, such as carbon storage. Although the generalization of our findings to other fragmented tropical forests is uncertain, it could negatively affect ecosystem productivity and stability and have broader impacts on coevolved organisms.

  7. Thermo-mechanical effects from a KBS-3 type repository. Performance of pillars between repository tunnels

    International Nuclear Information System (INIS)

    Hakami, E.; Olofsson, Stig-Olof

    2000-03-01

    The aim of this study has been to investigate how the rock mass, in the near field of a KBS-3 type repository, will be affected by the excavation of tunnels and deposition holes and the thermal load from the deposited waste. The three-dimensional finite difference program FLAC 3D was used to perform numerical simulation of the rock mass behaviour. The rock mass was modelled as a homogeneous and isotropic continuum. The initial area heat intensity of the repository was assumed to be 10 W/m 2 in all models. The results show that in the middle of the pillar between the repository tunnels the temperature reaches a maximum of about 70 deg C after 55 years of deposition. The extent of areas where the rock is predicted to yield depends on the assumed quality of the rock mass and the initial in-situ stress field. The volume of yielded rock reaches a maximum after about 200 years after deposition. For a rock mass with internal friction angle of 45 deg and cohesion of 5 MPa (using a Mohr-Coulomb material model), the extent of yielded rock is limited to about 1.5 m behind the excavation periphery. The largest rock displacements are found in the tunnel floor at the upper part of the deposition holes. Tension and shear failure in the periphery of the excavations is predicted to occur during the rock excavation, with a depth extension depending on the magnitude and orientation of the in-situ stresses, as well as on the rock mass quality. Both the excavation effects and the then-no-mechanical effects are smallest when the major principal stress is oriented parallel with the deposition tunnels. The maximum convergence between tunnel walls was calculated to occur after 200 years and be about 9 mm, in the model assuming a rock mass with 5 MPa cohesion, 45 deg internal friction angle and maximum horizontal stress perpendicular to the tunnel. In this study confining effects from the buffer and backfill material was neglected. The effective stress concept was used in most of the models

  8. Phylogenetic trees

    OpenAIRE

    Baños, Hector; Bushek, Nathaniel; Davidson, Ruth; Gross, Elizabeth; Harris, Pamela E.; Krone, Robert; Long, Colby; Stewart, Allen; Walker, Robert

    2016-01-01

    We introduce the package PhylogeneticTrees for Macaulay2 which allows users to compute phylogenetic invariants for group-based tree models. We provide some background information on phylogenetic algebraic geometry and show how the package PhylogeneticTrees can be used to calculate a generating set for a phylogenetic ideal as well as a lower bound for its dimension. Finally, we show how methods within the package can be used to compute a generating set for the join of any two ideals.

  9. Towards Interoperable Preservation Repositories: TIPR

    Directory of Open Access Journals (Sweden)

    Priscilla Caplan

    2010-07-01

    Full Text Available Towards Interoperable Preservation Repositories (TIPR is a project funded by the Institute of Museum and Library Services to create and test a Repository eXchange Package (RXP. The package will make it possible to transfer complex digital objects between dissimilar preservation repositories.  For reasons of redundancy, succession planning and software migration, repositories must be able to exchange copies of archival information packages with each other. Every different repository application, however, describes and structures its archival packages differently. Therefore each system produces dissemination packages that are rarely understandable or usable as submission packages by other repositories. The RXP is an answer to that mismatch. Other solutions for transferring packages between repositories focus either on transfers between repositories of the same type, such as DSpace-to-DSpace transfers, or on processes that rely on central translation services.  Rather than build translators between many dissimilar repository types, the TIPR project has defined a standards-based package of metadata files that can act as an intermediary information package, the RXP, a lingua franca all repositories can read and write.

  10. Repository simulation model: Final report

    International Nuclear Information System (INIS)

    1988-03-01

    This report documents the application of computer simulation for the design analysis of the nuclear waste repository's waste handling and packaging operations. The Salt Repository Simulation Model was used to evaluate design alternatives during the conceptual design phase of the Salt Repository Project. Code development and verification was performed by the Office of Nuclear Waste Isolation (ONWL). The focus of this report is to relate the experience gained during the development and application of the Salt Repository Simulation Model to future repository design phases. Design of the repository's waste handling and packaging systems will require sophisticated analysis tools to evaluate complex operational and logistical design alternatives. Selection of these design alternatives in the Advanced Conceptual Design (ACD) and License Application Design (LAD) phases must be supported by analysis to demonstrate that the repository design will cost effectively meet DOE's mandated emplacement schedule and that uncertainties in the performance of the repository's systems have been objectively evaluated. Computer simulation of repository operations will provide future repository designers with data and insights that no other analytical form of analysis can provide. 6 refs., 10 figs

  11. galaxieEST: addressing EST identity through automated phylogenetic analysis.

    Science.gov (United States)

    Nilsson, R Henrik; Rajashekar, Balaji; Larsson, Karl-Henrik; Ursing, Björn M

    2004-07-05

    Research involving expressed sequence tags (ESTs) is intricately coupled to the existence of large, well-annotated sequence repositories. Comparatively complete and satisfactory annotated public sequence libraries are, however, available only for a limited range of organisms, rendering the absence of sequences and gene structure information a tangible problem for those working with taxa lacking an EST or genome sequencing project. Paralogous genes belonging to the same gene family but distinguished by derived characteristics are particularly prone to misidentification and erroneous annotation; high but incomplete levels of sequence similarity are typically difficult to interpret and have formed the basis of many unsubstantiated assumptions of orthology. In these cases, a phylogenetic study of the query sequence together with the most similar sequences in the database may be of great value to the identification process. In order to facilitate this laborious procedure, a project to employ automated phylogenetic analysis in the identification of ESTs was initiated. galaxieEST is an open source Perl-CGI script package designed to complement traditional similarity-based identification of EST sequences through employment of automated phylogenetic analysis. It uses a series of BLAST runs as a sieve to retrieve nucleotide and protein sequences for inclusion in neighbour joining and parsimony analyses; the output includes the BLAST output, the results of the phylogenetic analyses, and the corresponding multiple alignments. galaxieEST is available as an on-line web service for identification of fungal ESTs and for download / local installation for use with any organism group at http://galaxie.cgb.ki.se/galaxieEST.html. By addressing sequence relatedness in addition to similarity, galaxieEST provides an integrative view on EST origin and identity, which may prove particularly useful in cases where similarity searches return one or more pertinent, but not full, matches and

  12. Repositories; Repositorios

    Energy Technology Data Exchange (ETDEWEB)

    Freire, Carolina Braccini; Tello, Cledola Cassia Oliveira de [Centro de Desenvolvimento da Tecnologia Nuclear (CDTN/CNEN-MG), Belo Horizonte, MG (Brazil)]. E-mails: cbf@cdtn.br; tellocc@cdtn.br

    2007-11-15

    The use of the nuclear energy is increasing in all areas. Then the radioactive waste management is in continuous development to comply the national and international established requirements. The final objective is to assure that it will not have any contamination of the public or the environmental, and that the exposition doses will be lower than the radiological protection limits. The multi barrier concept for the repository is internationally recognized. Among the repository types, the most used are: near surface, geological formations and of deposition in rock cavities. This article explains the concept and the types of repository and gives some examples of them. (author)

  13. re3data.org - a global registry of research data repositories

    Science.gov (United States)

    Pampel, Heinz; Vierkant, Paul; Elger, Kirsten; Bertelmann, Roland; Witt, Michael; Schirmbacher, Peter; Rücknagel, Jessika; Kindling, Maxi; Scholze, Frank; Ulrich, Robert

    2016-04-01

    re3data.org - the registry of research data repositories lists over 1,400 research data repositories from all over the world making it the largest and most comprehensive online catalog of research data repositories on the web. The registry is a valuable tool for researchers, funding organizations, publishers and libraries. re3data.org provides detailed information about research data repositories, and its distinctive icons help researchers to easily identify relevant repositories for accessing and depositing data sets [1]. Funding agencies, like the European Commission [2] and research institutions like the University of Bielefeld [3] already recommend the use of re3data.org in their guidelines and policies. Several publishers and journals like Copernicus Publications, PeerJ, and Nature's Scientific Data recommend re3data.org in their editorial policies as a tool for the easy identification of appropriate data repositories to store research data. Project partners in re3data.org are the Library and Information Services department (LIS) of the GFZ German Research Centre for Geosciences, the Computer and Media Service at the Humboldt-Universität zu Berlin, the Purdue University Libraries and the KIT Library at the Karlsruhe Institute of Technology (KIT). After its fusion with the U.S. American DataBib in 2014, re3data.org continues as a service of DataCite from 2016 on. DataCite is the international organization for the registration of Digital Object Identifiers (DOI) for research data and aims to improve their citation. The poster describes the current status and the future plans of re3data.org. [1] Pampel H, et al. (2013) Making Research Data Repositories Visible: The re3data.org Registry. PLoS ONE 8(11): e78080. doi:10.1371/journal.pone.0078080. [2] European Commission (2015): Guidelines on Open Access to Scientific Publications and Research Data in Horizon 2020. Available: http://ec.europa.eu/research/participants/data/ref/h2020/grants_manual/hi/oa_pilot/h2020-hi

  14. Thermal Conductivity of the Potential Repository Horizon Model Report

    International Nuclear Information System (INIS)

    Ramsey, J.

    2002-01-01

    The purpose of this report is to assess the spatial variability and uncertainty of thermal conductivity in the host horizon for the proposed repository at Yucca Mountain. More specifically, the lithostratigraphic units studied are located within the Topopah Spring Tuff (Tpt) and consist of the upper lithophysal zone (Tptpul), the middle nonlithophysal zone (Tptpmn), the lower lithophysal zone (Tptpll), and the lower nonlithophysal zone (Tptpln). The Tptpul is the layer directly above the repository host layers, which consist of the Tptpmn, Tptpll, and the Tptpln. Current design plans indicate that the largest portion of the repository will be excavated in the Tptpll (Board et al. 2002 [157756]). The main distinguishing characteristic among the lithophysal and nonlithophysal units is the percentage of large scale (cm-m) voids within the rock. The Tptpul and Tptpll, as their names suggest, have a higher percentage of lithophysae than the Tptpmn and the Tptpln. Understanding the influence of the lithophysae is of great importance to understanding bulk thermal conductivity and perhaps repository system performance as well. To assess the spatial variability and uncertainty of thermal conductivity, a model is proposed that is functionally dependent on the volume fraction of lithophysae and the thermal conductivity of the matrix portion of the rock. In this model, void space characterized as lithophysae is assumed to be air-saturated under all conditions, while void space characterized as matrix may be either water- or air-saturated. Lithophysae are assumed to be air-saturated under all conditions since the units being studied are all located above the water table in the region of interest, and the relatively strong capillary forces of the matrix will, under most conditions, preferentially retain any moisture present in the rock

  15. Incompletely resolved phylogenetic trees inflate estimates of phylogenetic conservatism.

    Science.gov (United States)

    Davies, T Jonathan; Kraft, Nathan J B; Salamin, Nicolas; Wolkovich, Elizabeth M

    2012-02-01

    The tendency for more closely related species to share similar traits and ecological strategies can be explained by their longer shared evolutionary histories and represents phylogenetic conservatism. How strongly species traits co-vary with phylogeny can significantly impact how we analyze cross-species data and can influence our interpretation of assembly rules in the rapidly expanding field of community phylogenetics. Phylogenetic conservatism is typically quantified by analyzing the distribution of species values on the phylogenetic tree that connects them. Many phylogenetic approaches, however, assume a completely sampled phylogeny: while we have good estimates of deeper phylogenetic relationships for many species-rich groups, such as birds and flowering plants, we often lack information on more recent interspecific relationships (i.e., within a genus). A common solution has been to represent these relationships as polytomies on trees using taxonomy as a guide. Here we show that such trees can dramatically inflate estimates of phylogenetic conservatism quantified using S. P. Blomberg et al.'s K statistic. Using simulations, we show that even randomly generated traits can appear to be phylogenetically conserved on poorly resolved trees. We provide a simple rarefaction-based solution that can reliably retrieve unbiased estimates of K, and we illustrate our method using data on first flowering times from Thoreau's woods (Concord, Massachusetts, USA).

  16. Managing and Evaluating Digital Repositories

    Science.gov (United States)

    Zuccala, Alesia; Oppenheim, Charles; Dhiensa, Rajveen

    2008-01-01

    Introduction: We examine the role of the digital repository manager, discuss the future of repository management and evaluation and suggest that library and information science schools develop new repository management curricula. Method: Face-to-face interviews were carried out with managers of five different types of repositories and a Web-based…

  17. Repository simulation tests

    International Nuclear Information System (INIS)

    Wicks, G.G.; Bibler, N.E.; Jantzen, C.M.; Plodinec, M.J.

    1984-01-01

    The repository simulation experiments described in this paper are designed to assess the performance of SRP waste glass under the most realistic repository conditions that can be obtained in the laboratory. These tests simulate the repository environment as closely as possible and introduce systematically the variability of the geology, groundwater chemistry, and waste package components during the leaching of the waste glass. The tests evaluate waste form performance under site-specific conditions, which differ for each of the geologic repositories under consideration. Data from these experiments will aid in the development of a realistic source term that can describe the release of radionuclides from SRP waste glass as a component of proposed waste packages. Hence, this information can be useful to optimize waste package design for SRP waste glass and to provide data for predicting long-term performance and subsequent conformance to regulations. The repository simulation tests also help to bridge the gap in interpreting results derived from tests performed under the control of the laboratory to the uncertainity and variability of field tests. In these experiments, site-specific repository components and conditions are emphasized and only the site specific materials contact the waste forms. An important feature of these tests is that both actual and simulated waste glasses are tested identically. 7 figures, 2 tables

  18. The repository ecology an approach to understanding repository and service interactions

    CERN Document Server

    CERN. Geneva; Hagemann, Melissa

    2007-01-01

    An increasing number of university institutions and other organisations are deciding to deploy repositories and a growing number of formal and informal distributed services are supporting or capitalising on the information these repositories provide. Despite reasonably well understood technical architectures, early majority adopters may struggle to articulate their place within the actualities of a wider information environment. The idea of a repository ecology provides developers and administrators with a useful way of articulating and analysing their place in the information environment, and the technical and organisational interactions they have, or are developing, with other parts of such an environment. This presentation will provide an overview of the concept of a repository ecology and examine some examples from the domains of scholarly communications and elearning.

  19. Phylogenetic relationships among species of Lutzomyia, subgenus Lutzomyia (Diptera: Psychodidae).

    Science.gov (United States)

    Pinto, Israel S; Filho, José D Andrade; Santos, Claudiney B; Falqueto, Aloísio; Leite, Yuri L R

    2010-01-01

    Lutzomyia França is the largest and most diverse sand fly genus in the New World and contains all the species involved in the transmission of American visceral leishmaniasis (AVL). Morphological characters were used to test the monophyly and to infer phylogenetic relationships among members of the Lutzomyia subgenus. Fifty-two morphological characters from male and female adult specimens belonging to 18 species of Lu. (Lutzomyia) were scored and analyzed. The resulting phylogeny confirms the monophyly of this subgenus and reveals four main internal clades. These four clades, however, do not support the classification of the subgenus in two series, longipalpis and cavernicola, because neither is necessarily monophyletic. Knowledge on phylogenetic relationships among these relevant vectors of AVL should be used as a tool for monitoring target taxa and a first step for establishing an early warning system for disease control.

  20. Coupling fuel cycles with repositories: how repository institutional choices may impact fuel cycle design

    International Nuclear Information System (INIS)

    Forsberg, C.; Miller, W.F.

    2013-01-01

    The historical repository siting strategy in the United States has been a top-down approach driven by federal government decision making but it has been a failure. This policy has led to dispatching fuel cycle facilities in different states. The U.S. government is now considering an alternative repository siting strategy based on voluntary agreements with state governments. If that occurs, state governments become key decision makers. They have different priorities. Those priorities may change the characteristics of the repository and the fuel cycle. State government priorities, when considering hosting a repository, are safety, financial incentives and jobs. It follows that states will demand that a repository be the center of the back end of the fuel cycle as a condition of hosting it. For example, states will push for collocation of transportation services, safeguards training, and navy/private SNF (Spent Nuclear Fuel) inspection at the repository site. Such activities would more than double local employment relative to what was planned for the Yucca Mountain-type repository. States may demand (1) the right to take future title of the SNF so if recycle became economic the reprocessing plant would be built at the repository site and (2) the right of a certain fraction of the repository capacity for foreign SNF. That would open the future option of leasing of fuel to foreign utilities with disposal of the SNF in the repository but with the state-government condition that the front-end fuel-cycle enrichment and fuel fabrication facilities be located in that state

  1. The repository ecology: an approach to understanding repository and service interactions

    CERN Multimedia

    CERN. Geneva

    2007-01-01

    An increasing number of university institutions and other organisations are deciding to deploy repositories and a growing number of formal and informal distributed services are supporting or capitalising on the information these repositories provide. Despite reasonably well understood technical architectures, early majority adopters may struggle to articulate their place within the actualities of a wider information environment. The idea of a repository ecology provides developers and administrators with a useful way of articulating and analysing their place in the information environment, and the technical and organisational interactions they have, or are developing, with other parts of such an environment. This presentation will provide an overview of the concept of a repository ecology and examine some examples from the domains of scholarly communications and elearning. View John Robertson's biography

  2. Formulation and evaluation of gas release scenarios for the silo in Swedish Final Repository for Radioactive Waste (SFR)

    International Nuclear Information System (INIS)

    Carlsson, J.; Moreno, L.

    1992-01-01

    The Swedish Final Repository for Radioactive Waste (SFR) has been in operation since 1988 and is located in the crystalline rock, 60 m below the Baltic Sea. In the licensing procedure for the SFR the safety assessment has been complemented with a detailed scenario analysis of the performance of the repository. The scenarios include the influence on radionuclide release by gas formation and gas transport processes in the silo. The overall conclusion is that the release of most radionuclides from the silo is only marginally affected by the formation and release of gas, even for scenarios considering unexpected events. The largest effects were found for short-lived radionuclides and radionuclides that have no or low sorption ability. Except for very extreme scenarios for the silo the overall impact from repository on the environment is by far dominated by the release of radionuclides from the rock vaults. 10 refs., 6 figs

  3. Repository operational criteria analysis

    International Nuclear Information System (INIS)

    Hageman, J.P.; Chowdhury, A.H.

    1992-08-01

    The objective of the ''Repository Operational Criteria (ROC) Feasibility Studies'' (or ROC task) was to conduct comprehensive and integrated analyses of repository design, construction, and operations criteria in 10 CFR Part 60 regulations, considering the interfaces and impacts of any potential changes to those regulations. The study addresses regulatory criteria related to the preclosure aspects of the geologic repository. The study task developed regulatory concepts or potential repository operational criteria (PROC) based on analysis of a repository's safety functions and other regulations for similar facilities. These regulatory concepts or PROC were used as a basis to assess the sufficiency and adequacy of the current criteria in 10 CFR Part 60. Where the regulatory concepts were same as current operational criteria, these criteria were referenced. The operations criteria referenced or the PROC developed are given in this report. Detailed analyses used to develop the regulatory concepts and any necessary PROC for those regulations that may require a minor change are also presented. The results of the ROC task showed a need for further analysis and possible major rule change related to the design bases of a geologic repository operations area, siting, and radiological emergency planning

  4. Consortial routes to effective repositories

    OpenAIRE

    Moyle, M.; Proudfoot, R.

    2009-01-01

    A consortial approach to the establishment of repository services can help a group of Higher Education Institutions (HEIs) to share costs, share technology and share expertise. Consortial repository work can tap into existing structures, or it can involve new groupings of institutions with a common interest in exploring repository development. This Briefing Paper outlines some of the potential benefits of collaborative repository activity, and highlights some of the technical and organisation...

  5. Repository design

    Energy Technology Data Exchange (ETDEWEB)

    John, C M

    1982-01-01

    Various technical issues of radioactive waste design are addressed in this paper. Two approaches to repository design considered herein are: (1) design to minimize the disturbance of the hot rock; and (2) designs that intentionally modify the hot rock to insure better containment of the wastes. The latter designs range from construction of a highly impermeable barrier around a spherical cavern to creating a matrix of tunnels and boreholes to form a cage within which the hydraulic pressure is nearly constant. Examples of these design alternatives are described in some detail. It is concluded that proposed designs for repositories illustrate that performance criteria considered acceptable for such facilities can be met by appropriate site selection and repository engineering. With these technically feasible design concepts, it is also felt that socioeconomic and institutional issues can be better resolved. (BLM)

  6. Phylogenetic comparative methods on phylogenetic networks with reticulations.

    Science.gov (United States)

    Bastide, Paul; Solís-Lemus, Claudia; Kriebel, Ricardo; Sparks, K William; Ané, Cécile

    2018-04-25

    The goal of Phylogenetic Comparative Methods (PCMs) is to study the distribution of quantitative traits among related species. The observed traits are often seen as the result of a Brownian Motion (BM) along the branches of a phylogenetic tree. Reticulation events such as hybridization, gene flow or horizontal gene transfer, can substantially affect a species' traits, but are not modeled by a tree. Phylogenetic networks have been designed to represent reticulate evolution. As they become available for downstream analyses, new models of trait evolution are needed, applicable to networks. One natural extension of the BM is to use a weighted average model for the trait of a hybrid, at a reticulation point. We develop here an efficient recursive algorithm to compute the phylogenetic variance matrix of a trait on a network, in only one preorder traversal of the network. We then extend the standard PCM tools to this new framework, including phylogenetic regression with covariates (or phylogenetic ANOVA), ancestral trait reconstruction, and Pagel's λ test of phylogenetic signal. The trait of a hybrid is sometimes outside of the range of its two parents, for instance because of hybrid vigor or hybrid depression. These two phenomena are rather commonly observed in present-day hybrids. Transgressive evolution can be modeled as a shift in the trait value following a reticulation point. We develop a general framework to handle such shifts, and take advantage of the phylogenetic regression view of the problem to design statistical tests for ancestral transgressive evolution in the evolutionary history of a group of species. We study the power of these tests in several scenarios, and show that recent events have indeed the strongest impact on the trait distribution of present-day taxa. We apply those methods to a dataset of Xiphophorus fishes, to confirm and complete previous analysis in this group. All the methods developed here are available in the Julia package PhyloNetworks.

  7. Centralized mouse repositories.

    Science.gov (United States)

    Donahue, Leah Rae; Hrabe de Angelis, Martin; Hagn, Michael; Franklin, Craig; Lloyd, K C Kent; Magnuson, Terry; McKerlie, Colin; Nakagata, Naomi; Obata, Yuichi; Read, Stuart; Wurst, Wolfgang; Hörlein, Andreas; Davisson, Muriel T

    2012-10-01

    Because the mouse is used so widely for biomedical research and the number of mouse models being generated is increasing rapidly, centralized repositories are essential if the valuable mouse strains and models that have been developed are to be securely preserved and fully exploited. Ensuring the ongoing availability of these mouse strains preserves the investment made in creating and characterizing them and creates a global resource of enormous value. The establishment of centralized mouse repositories around the world for distributing and archiving these resources has provided critical access to and preservation of these strains. This article describes the common and specialized activities provided by major mouse repositories around the world.

  8. Demystifying the institutional repository for success

    CERN Document Server

    Buehler, Marianne

    2013-01-01

    Institutional repositories remain key to data storage on campus, fulfilling the academic needs of various stakeholders. Demystifying the Institutional Repository for Success is a practical guide to creating and sustaining an institutional repository through marketing, partnering, and understanding the academic needs of all stakeholders on campus. This title is divided into seven chapters, covering: traditional scholarly communication and open access publishing; the academic shift towards open access; what the successful institutional repository looks like; institutional repository collaboratio

  9. Phylogenetic turnover during subtropical forest succession across environmental and phylogenetic scales.

    Science.gov (United States)

    Purschke, Oliver; Michalski, Stefan G; Bruelheide, Helge; Durka, Walter

    2017-12-01

    Although spatial and temporal patterns of phylogenetic community structure during succession are inherently interlinked and assembly processes vary with environmental and phylogenetic scales, successional studies of community assembly have yet to integrate spatial and temporal components of community structure, while accounting for scaling issues. To gain insight into the processes that generate biodiversity after disturbance, we combine analyses of spatial and temporal phylogenetic turnover across phylogenetic scales, accounting for covariation with environmental differences. We compared phylogenetic turnover, at the species- and individual-level, within and between five successional stages, representing woody plant communities in a subtropical forest chronosequence. We decomposed turnover at different phylogenetic depths and assessed its covariation with between-plot abiotic differences. Phylogenetic turnover between stages was low relative to species turnover and was not explained by abiotic differences. However, within the late-successional stages, there was high presence-/absence-based turnover (clustering) that occurred deep in the phylogeny and covaried with environmental differentiation. Our results support a deterministic model of community assembly where (i) phylogenetic composition is constrained through successional time, but (ii) toward late succession, species sorting into preferred habitats according to niche traits that are conserved deep in phylogeny, becomes increasingly important.

  10. The European Repository Landscape 2008 Inventory of Digital Repositories for Research Output

    CERN Document Server

    Van der Graaf, Maurits

    2009-01-01

    It is widely acknowledged that a common knowledge base for European research is necessary. Research repositories are an important innovation to the scientific information infrastructure. In 2006, digital repositories in the 27 countries of the European we

  11. Office of Geologic Repositories quality assurance plan for high-level radioactive waste repositories

    International Nuclear Information System (INIS)

    1986-08-01

    This document sets forth geologic repository program-wide quality assurance program requirements and defines management's quality assurance responsibilities for the Office of Geologic Repositories and its projects. (LM)

  12. Virtual patient repositories--a comparative analysis.

    Science.gov (United States)

    Küfner, Julia; Kononowicz, Andrzej A; Hege, Inga

    2014-01-01

    Virtual Patients (VPs) are an important component of medical education. One way to reduce the costs for creating VPs is sharing through repositories. We conducted a literature review to identify existing repositories and analyzed the 17 included repositories in regards to the search functions and metadata they provide. Most repositories provided some metadata such as title or description, whereas other data, such as educational objectives, were less frequent. Future research could, in cooperation with the repository provider, investigate user expectations and usage patterns.

  13. Technology overview of mined repositories

    International Nuclear Information System (INIS)

    Gimera, R.; Thirumalai, K.

    1982-01-01

    Mined repositories present an environmentally viable option for permanent disposal of nuclear waste. This paper reviews the state-of-the-art mining technologies and identifies technological issues and developments necessary to mine a repository in basalt. The thermal loading, isolation, and retrieval requirements of a repository present unique technological challenges unknown to conventional mining practice. The technology issues and developments required in the areas of excavation, roof and ground support, equipment development, instrumentation development, and sealing are presented. Performance assessment methods must be developed to evaluate the adequacies of technologies developed to design, construct, operate, and decommission a repository. A stepwise test-and-development approach is used in the Basalt Waste Isolation Project to develop cost-effective technologies for a repository

  14. Breast Cancer Tissue Repository

    National Research Council Canada - National Science Library

    Iglehart, J

    1997-01-01

    The Breast Tissue Repository at Duke enters its fourth year of finding. The purpose of the Repository at Duke is to provide substantial quantities of frozen tissue for explorative molecular studies...

  15. Molecular phylogenetics of porcini mushrooms (Boletus section Boletus).

    Science.gov (United States)

    Dentinger, Bryn T M; Ammirati, Joseph F; Both, Ernst E; Desjardin, Dennis E; Halling, Roy E; Henkel, Terry W; Moreau, Pierre-Arthur; Nagasawa, Eiji; Soytong, Kasem; Taylor, Andy F; Watling, Roy; Moncalvo, Jean-Marc; McLaughlin, David J

    2010-12-01

    Porcini (Boletus section Boletus: Boletaceae: Boletineae: Boletales) are a conspicuous group of wild, edible mushrooms characterized by fleshy fruiting bodies with a poroid hymenophore that is "stuffed" with white hyphae when young. Their reported distribution is with ectomycorrhizal plants throughout the Northern Hemisphere. Little progress has been made on the systematics of this group using modern molecular phylogenetic tools because sampling has been limited primarily to European species and the genes employed were insufficient to resolve the phylogeny. We examined the evolutionary history of porcini by using a global geographic sampling of most known species, new discoveries from little explored areas, and multiple genes. We used 78 sequences from the fast-evolving nuclear internal transcribed spacers and are able to recognize 18 reciprocally monophyletic species. To address whether or not porcini form a monophyletic group, we compiled a broadly sampled dataset of 41 taxa, including other members of the Boletineae, and used separate and combined phylogenetic analysis of sequences from the nuclear large subunit ribosomal DNA, the largest subunit of RNA polymerase II, and the mitochondrial ATPase subunit six gene. Contrary to previous studies, our separate and combined phylogenetic analyses support the monophyly of porcini. We also report the discovery of two taxa that expand the known distribution of porcini to Australia and Thailand and have ancient phylogenetic connections to the rest of the group. A relaxed molecular clock analysis with these new taxa dates the origin of porcini to between 42 and 54 million years ago, coinciding with the initial diversification of angiosperms, during the Eocene epoch when the climate was warm and humid. These results reveal an unexpected diversity, distribution, and ancient origin of a group of commercially valuable mushrooms that may provide an economic incentive for conservation and support the hypothesis of a tropical

  16. Correcting names of bacteria deposited in National Microbial Repositories: an analysed sequence data necessary for taxonomic re-categorization of misclassified bacteria-ONE example, genus Lysinibacillus.

    Science.gov (United States)

    Rekadwad, Bhagwan N; Gonzalez, Juan M

    2017-08-01

    A report on 16S rRNA gene sequence re-analysis and digitalization is presented using Lysinibacillus species (one example) deposited in National Microbial Repositories in India. Lysinibacillus species 16S rRNA gene sequences were digitalized to provide quick response (QR) codes, Chaose Game Representation (CGR) and Frequency of Chaose Game Representation (FCGR). GC percentage, phylogenetic analysis, and principal component analysis (PCA) are tools used for the differentiation and reclassification of the strains under investigation. The seven reasons supporting the statements made by us as misclassified Lysinibacillus species deposited in National Microbial Depositories are given in this paper. Based on seven reasons, bacteria deposited in National Microbial Repositories such as Lysinibacillus and many other needs reanalyses for their exact identity. Leaves of identity with type strains of related species shows difference 2 to 8 % suggesting that reclassification is needed to correctly assign species names to the analyzed Lysinibacillus strains available in National Microbial Repositories.

  17. INSTITUTIONAL REPOSITORY: EMPLOYMENT IN EDUCATION

    Directory of Open Access Journals (Sweden)

    Vasyl P. Oleksyuk

    2012-11-01

    Full Text Available The article investigated the concept of «institutional repository» and determined the aspects of institutional repositories in higher education. Institutional Repositories are information systems that allow preserving, storing and disseminating scientific knowledge produced in higher education and scientific research institutions. This study presented the main aspects using institutional repositories in educational process (such as storage of scientific and educational information, means of organization activity of students, object of studying. This article produced the structure of communities and collections of the institutional. It is described the experience of implementing of DSpace in the learning process.

  18. Toward a phylogenetic chronology of ancient Gaulish, Celtic, and Indo-European.

    Science.gov (United States)

    Forster, Peter; Toth, Alfred

    2003-07-22

    Indo-European is the largest and best-documented language family in the world, yet the reconstruction of the Indo-European tree, first proposed in 1863, has remained controversial. Complications may include ascertainment bias when choosing the linguistic data, and disregard for the wave model of 1872 when attempting to reconstruct the tree. Essentially analogous problems were solved in evolutionary genetics by DNA sequencing and phylogenetic network methods, respectively. We now adapt these tools to linguistics, and analyze Indo-European language data, focusing on Celtic and in particular on the ancient Celtic language of Gaul (modern France), by using bilingual Gaulish-Latin inscriptions. Our phylogenetic network reveals an early split of Celtic within Indo-European. Interestingly, the next branching event separates Gaulish (Continental Celtic) from the British (Insular Celtic) languages, with Insular Celtic subsequently splitting into Brythonic (Welsh, Breton) and Goidelic (Irish and Scottish Gaelic). Taken together, the network thus suggests that the Celtic language arrived in the British Isles as a single wave (and then differentiated locally), rather than in the traditional two-wave scenario ("P-Celtic" to Britain and "Q-Celtic" to Ireland). The phylogenetic network furthermore permits the estimation of time in analogy to genetics, and we obtain tentative dates for Indo-European at 8100 BC +/- 1,900 years, and for the arrival of Celtic in Britain at 3200 BC +/- 1,500 years. The phylogenetic method is easily executed by hand and promises to be an informative approach for many problems in historical linguistics.

  19. Trust in Digital Repositories

    Directory of Open Access Journals (Sweden)

    Elizabeth Yakel

    2013-06-01

    Full Text Available ISO 16363:2012, Space Data and Information Transfer Systems - Audit and Certification of Trustworthy Digital Repositories (ISO TRAC, outlines actions a repository can take to be considered trustworthy, but research examining whether the repository’s designated community of users associates such actions with trustworthiness has been limited. Drawing from this ISO document and the management and information systems literatures, this paper discusses findings from interviews with 66 archaeologists and quantitative social scientists. We found similarities and differences across the disciplines and among the social scientists. Both disciplinary communities associated trust with a repository’s transparency. However, archaeologists mentioned guarantees of preservation and sustainability more frequently than the social scientists, who talked about institutional reputation. Repository processes were also linked to trust, with archaeologists more frequently citing metadata issues and social scientists discussing data selection and cleaning processes. Among the social scientists, novices mentioned the influence of colleagues on their trust in repositories almost twice as much as the experts. We discuss the implications our findings have for identifying trustworthy repositories and how they extend the models presented in the management and information systems literatures.

  20. Desiderata for healthcare integrated data repositories based on architectural comparison of three public repositories.

    Science.gov (United States)

    Huser, Vojtech; Cimino, James J

    2013-01-01

    Integrated data repositories (IDRs) are indispensable tools for numerous biomedical research studies. We compare three large IDRs (Informatics for Integrating Biology and the Bedside (i2b2), HMO Research Network's Virtual Data Warehouse (VDW) and Observational Medical Outcomes Partnership (OMOP) repository) in order to identify common architectural features that enable efficient storage and organization of large amounts of clinical data. We define three high-level classes of underlying data storage models and we analyze each repository using this classification. We look at how a set of sample facts is represented in each repository and conclude with a list of desiderata for IDRs that deal with the information storage model, terminology model, data integration and value-sets management.

  1. Process mining software repositories

    NARCIS (Netherlands)

    Poncin, W.; Serebrenik, A.; Brand, van den M.G.J.

    2011-01-01

    Software developers' activities are in general recorded in software repositories such as version control systems, bug trackers and mail archives. While abundant information is usually present in such repositories, successful information extraction is often challenged by the necessity to

  2. The Ec prototype repository project: implications of assessments for refining repository design

    International Nuclear Information System (INIS)

    Svemar, C.

    2004-01-01

    The most important issue in the evaluation of the repository performance is the long term safety of the repository. Analyses for this issue focuses on the 'steady state' conditions which start at the time when the repository has been saturated and the groundwater table returned to its normal level. The bentonite buffer around the canisters is saturated and homogeneous, and the canister is located exactly in the centre of the buffer. The backfill in the tunnel has been saturated as well and fills the earlier open spaces in the tunnel completely. The task of the activities taking places prior to the start of the 'steady state' conditions, like excavation, deposition, backfilling and sealing, with due consideration to the processes a consequences they may cause in the long run, is to provide for these 'ideal' conditions, as close as possible. While studying these activities in detail it has become obvious that development of methods and techniques needs to be carefully addressed before the decision is made on how to apply them in the repository. One general finding is that the situation in engineering of details is not that much different from the situation in geological characterisation of a site in detail; one more detail of engineering and the consequences it brings often complicates the situation rather than supports the solution prioritized so far. Many of the practical issues have been studied in the Prototype Repository project in the AEspoe Hard Rock Laboratory (Pusch et al., 2000). The Prototype Repository consists of two sections with four respectively two deposition holes with bentonite buffer and canister, the latter holding electrical heaters. The sections are separated by a concrete plug, and the whole test is to be separated from the rest of the laboratory by an outer plug. The project has two objectives: 1. To demonstrate the integrated function of tile deep repository components under realistic conditions and to compare results with models and

  3. 48 CFR 227.7108 - Contractor data repositories.

    Science.gov (United States)

    2010-10-01

    ... repositories. 227.7108 Section 227.7108 Federal Acquisition Regulations System DEFENSE ACQUISITION REGULATIONS... Technical Data 227.7108 Contractor data repositories. (a) Contractor data repositories may be established when permitted by agency procedures. The contractual instrument establishing the data repository must...

  4. Rock support for nuclear waste repositories

    International Nuclear Information System (INIS)

    Abramson, L.W.; Schmidt, B.

    1984-01-01

    The design of rock support for underground nuclear waste repositories requires consideration of special construction and operation requirements, and of the adverse environmental conditions in which some of the support is placed. While repository layouts resemble mines, design, construction and operation are subject to quality assurance and public scrutiny similar to what is experienced for nuclear power plants. Exploration, design, construction and operation go through phases of review and licensing by government agencies as repositories evolve. This paper discusses (1) the various stages of repository development; (2) the environment that supports must be designed for; (3) the environmental effects on support materials; and (4) alternative types of repository rock support

  5. National Radwaste Repository Mochovce

    International Nuclear Information System (INIS)

    2000-01-01

    In this leaflet the National Radioactive Waste Repository in Mochovce (Repository) is described. The Mochovce National Radioactive Waste Repository is a surface multi-barrier type storage facility for solid and treated solidified radioactive wastes generated from the Slovak Republic nuclear power plants operation and decommissioning, research institutes, laboratories and hospitals. The Repository comprises a system of single- and double-row storage boxes. The first double-row is enclosed by a steel-structure building. The 18 x 6 x 5.5 m storage boxes are made of reinforced concrete. The wall thickness is 600 mm. Two-double-rows, i.e. 80 storage boxes were built as part of Stage I (1 row = 20 storage boxes). Each storage box has a storage capacity of 90 fibre concrete containers of 3.1 m 3 volume. The total storage capacity is 7200 containers with the overall storage volume of 22320 m 3

  6. Analysis of Turkey’s Institutional Open Repositories: An Example of Dokuz Eylül University Institutional Open Repository

    Directory of Open Access Journals (Sweden)

    Korhan Levent Ertürk

    2012-03-01

    Full Text Available After the declaration of the Budapest Open Access Initiative in 2001, institutional open repositories are known as the most important tool of the self archiving, which is also known as green road. There are 26 institutional repositories, which are all compatible to international standards. All the institutional open repositories of Turkey mentioned before are listed in international open archive directories. In this study institutional open repository of Dokuz Eylül University is examined and institutional open repositories of Turkey are discussed.

  7. Radioactive waste repository of high ecological safety

    International Nuclear Information System (INIS)

    Sobolev, I.; Barinov, A.; Prozorov, L.

    2000-01-01

    With the purpose to construct a radioactive waste repository of high ecological safety and reliable containment, MosNPO 'Radon' specialists have developed an advanced type repository - large diameter well (LBD) one. A project is started for the development of a technology for LDW repository construction and pilot operation of the new repository for 25-30 years. The 2 LDW repositories constructed at the 'Radon' site and the developed monitoring system are described

  8. BIMLR: a method for constructing rooted phylogenetic networks from rooted phylogenetic trees.

    Science.gov (United States)

    Wang, Juan; Guo, Maozu; Xing, Linlin; Che, Kai; Liu, Xiaoyan; Wang, Chunyu

    2013-09-15

    Rooted phylogenetic trees constructed from different datasets (e.g. from different genes) are often conflicting with one another, i.e. they cannot be integrated into a single phylogenetic tree. Phylogenetic networks have become an important tool in molecular evolution, and rooted phylogenetic networks are able to represent conflicting rooted phylogenetic trees. Hence, the development of appropriate methods to compute rooted phylogenetic networks from rooted phylogenetic trees has attracted considerable research interest of late. The CASS algorithm proposed by van Iersel et al. is able to construct much simpler networks than other available methods, but it is extremely slow, and the networks it constructs are dependent on the order of the input data. Here, we introduce an improved CASS algorithm, BIMLR. We show that BIMLR is faster than CASS and less dependent on the input data order. Moreover, BIMLR is able to construct much simpler networks than almost all other methods. BIMLR is available at http://nclab.hit.edu.cn/wangjuan/BIMLR/. © 2013 Elsevier B.V. All rights reserved.

  9. Consistency analysis of network traffic repositories

    NARCIS (Netherlands)

    Lastdrager, Elmer; Lastdrager, E.E.H.; Pras, Aiko

    Traffic repositories with TCP/IP header information are very important for network analysis. Researchers often assume that such repositories reliably represent all traffic that has been flowing over the network; little thoughts are made regarding the consistency of these repositories. Still, for

  10. Sellafield repository design concept

    International Nuclear Information System (INIS)

    1998-01-01

    Between 1989 and 1997, UK Nirex Ltd carried out a programme of investigations to evaluate the potential of a site adjacent to the BNFL Sellafield works to host a deep repository for the United Kingdom's intermediate-level and certain low-level radioactive waste. The programme of investigations was wound down following the decision in March 1997 to uphold the rejection of the Company's planning application for the Rock Characterisation Facility (RCF), an underground laboratory which would have allowed further investigations to confirm whether or not the site would be suitable. Since that time, the Company's efforts in relation to the Sellafield site have been directed towards documenting and publishing the work carried out. The design concept for a repository at Sellafield was developed in parallel with the site investigations through an iterative process as knowledge of the site and understanding of the repository system performance increased. This report documents the Sellafield repository design concept as it had been developed, from initial design considerations in 1991 up to the point when the RCF planning application was rejected. It shows, from the context of a project at that particular site, how much information and experience has been gained that will be applicable to the development of a deep waste repository at other potential sites

  11. Influence analysis of Github repositories.

    Science.gov (United States)

    Hu, Yan; Zhang, Jun; Bai, Xiaomei; Yu, Shuo; Yang, Zhuo

    2016-01-01

    With the support of cloud computing techniques, social coding platforms have changed the style of software development. Github is now the most popular social coding platform and project hosting service. Software developers of various levels keep entering Github, and use Github to save their public and private software projects. The large amounts of software developers and software repositories on Github are posing new challenges to the world of software engineering. This paper tries to tackle one of the important problems: analyzing the importance and influence of Github repositories. We proposed a HITS based influence analysis on graphs that represent the star relationship between Github users and repositories. A weighted version of HITS is applied to the overall star graph, and generates a different set of top influential repositories other than the results from standard version of HITS algorithm. We also conduct the influential analysis on per-month star graph, and study the monthly influence ranking of top repositories.

  12. CRIS and Institutional Repositories

    Directory of Open Access Journals (Sweden)

    A Asserson

    2010-04-01

    Full Text Available CRIS (Current Research Information Systems provide researchers, research managers, innovators, and others with a view over the research activity of a domain. IRs (institutional repositories provide a mechanism for an organisation to showcase through OA (open access its intellectual property. Increasingly, organizations are mandating that their employed researchers deposit peer-reviewed published material in the IR. Research funders are increasingly mandating that publications be deposited in an open access repository: some mandate a central (or subject-based repository, some an IR. In parallel, publishers are offering OA but replacing subscription-based access with author (or author institution payment for publishing. However, many OA repositories have metadata based on DC (Dublin Core which is inadequate; a CERIF (Common-European Research Information Format CRIS provides metadata describing publications with formal syntax and declared semantics thus facilitating interoperation or homogeneous access over heterogeneous sources. The formality is essential for research output metrics, which are increasingly being used to determine future funding for research organizations.

  13. Nuclear waste repository design and construction

    International Nuclear Information System (INIS)

    Bohlke, B.M.; Monsees, J.E.

    1987-01-01

    Extensive underground excavation will be required for construction of a mined geologic repository for nuclear waste. Hundreds of thousands of feet of drift will be required based on the conceptual layout design for each candidate nuclear waste repository. Comparison of boring and blasting excavation methods are discussed, as are special design and construction requirements (e.g., quality assurance procedures and performance assessment) for the nuclear waste repository. Comparisons are made between boring and blasting construction methods for the repository designs proposed for salt, volcanic tuff, and basalt

  14. National radioactive wasterRepository Mochovce

    International Nuclear Information System (INIS)

    2000-01-01

    In this leaflet the scheme of the Mochovce National radioactive waste repository for the Slovak Republic is presented. The National radioactive waste repository in Mochovce is a surface type storage facility. It is intended for final disposal of solid and solidified low and intermediate radioactive waste produced during the operation of nuclear power plants and institutions located within the territory of the Slovak Republic. The Repository site is situated about 2 km northwest to the Mochovce NPP

  15. Phylogenetic turnover during subtropical forest succession across environmental and phylogenetic scales

    OpenAIRE

    Purschke, Oliver; Michalski, Stefan G.; Bruelheide, Helge; Durka, Walter

    2017-01-01

    Abstract Although spatial and temporal patterns of phylogenetic community structure during succession are inherently interlinked and assembly processes vary with environmental and phylogenetic scales, successional studies of community assembly have yet to integrate spatial and temporal components of community structure, while accounting for scaling issues. To gain insight into the processes that generate biodiversity after disturbance, we combine analyses of spatial and temporal phylogenetic ...

  16. The largest subunit of RNA polymerase II from the Glaucocystophyta: functional constraint and short-branch exclusion in deep eukaryotic phylogeny

    Directory of Open Access Journals (Sweden)

    Stiller John W

    2005-12-01

    Full Text Available Abstract Background Evolutionary analyses of the largest subunit of RNA polymerase II (RPB1 have yielded important and at times provocative results. One particularly troublesome outcome is the consistent inference of independent origins of red algae and green plants, at odds with the more widely accepted view of a monophyletic Plantae comprising all eukaryotes with primary plastids. If the hypothesis of a broader kingdom Plantae is correct, then RPB1 trees likely reflect a persistent phylogenetic artifact. To gain a better understanding of RNAP II evolution, and the presumed artifact relating to green plants and red algae, we isolated and analyzed RPB1 from representatives of Glaucocystophyta, the third eukaryotic group with primary plastids. Results Phylogenetic analyses incorporating glaucocystophytes do not recover a monophyletic Plantae; rather they result in additional conflicts with the most widely held views on eukaryotic relationships. In particular, glaucocystophytes are recovered as sister to several amoebozoans with strong support. A detailed investigation shows that this clade can be explained by what we call "short-branch exclusion," a phylogenetic artifact integrally associated with "long-branch attraction." Other systematic discrepancies observed in RPB1 trees can be explained as phylogenetic artifacts; however, these apparent artifacts also appear in regions of the tree that support widely held views of eukaryotic evolution. In fact, most of the RPB1 tree is consistent with artifacts of rate variation among sequences and co-variation due to functional constraints related to C-terminal domain based RNAP II transcription. Conclusion Our results reveal how subtle and easily overlooked biases can dominate the overall results of molecular phylogenetic analyses of ancient eukaryotic relationships. Sources of potential phylogenetic artifact should be investigated routinely, not just when obvious "long-branch attraction" is encountered.

  17. Biological Web Service Repositories Review.

    Science.gov (United States)

    Urdidiales-Nieto, David; Navas-Delgado, Ismael; Aldana-Montes, José F

    2017-05-01

    Web services play a key role in bioinformatics enabling the integration of database access and analysis of algorithms. However, Web service repositories do not usually publish information on the changes made to their registered Web services. Dynamism is directly related to the changes in the repositories (services registered or unregistered) and at service level (annotation changes). Thus, users, software clients or workflow based approaches lack enough relevant information to decide when they should review or re-execute a Web service or workflow to get updated or improved results. The dynamism of the repository could be a measure for workflow developers to re-check service availability and annotation changes in the services of interest to them. This paper presents a review on the most well-known Web service repositories in the life sciences including an analysis of their dynamism. Freshness is introduced in this paper, and has been used as the measure for the dynamism of these repositories. © 2017 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA.

  18. IAEA safeguards for geological repositories

    International Nuclear Information System (INIS)

    Moran, B.W.

    2005-01-01

    In September. 1988, the IAEA held its first formal meeting on the safeguards requirements for the final disposal of spent fuel and nuclear material-bearing waste. The consensus recommendation of the 43 participants from 18 countries at this Advisory Group Meeting was that safeguards should not terminate of spent fuel even after emplacement in, and closure of, a geologic repository.' As a result of this recommendation, the IAEA initiated a series of consultants' meetings and the SAGOR Programme (Programme for the Development of Safeguards for the Final Disposal of Spent Fuel in Geologic Repositories) to develop an approach that would permit IAEA safeguards to verify the non-diversion of spent fuel from a geologic repository. At the end of this process, in December 1997, a second Advisory Group Meeting, endorsed the generic safeguards approach developed by the SAGOR Programme. Using the SAGOR Programme results and consultants' meeting recommendations, the IAEA Department of Safeguards issued a safeguards policy paper stating the requirements for IAEA safeguards at geologic repositories. Following approval of the safeguards policy and the generic safeguards approach, the Geologic Repository Safeguards Experts Group was established to make recommendations on implementing the safeguards approach. This experts' group is currently making recommendations to the IAEA regarding the safeguards activities to be conducted with respect to Finland's repository programme. (author)

  19. Phylogenetic and biogeographic analysis of sphaerexochine trilobites.

    Directory of Open Access Journals (Sweden)

    Curtis R Congreve

    Full Text Available BACKGROUND: Sphaerexochinae is a speciose and widely distributed group of cheirurid trilobites. Their temporal range extends from the earliest Ordovician through the Silurian, and they survived the end Ordovician mass extinction event (the second largest mass extinction in Earth history. Prior to this study, the individual evolutionary relationships within the group had yet to be determined utilizing rigorous phylogenetic methods. Understanding these evolutionary relationships is important for producing a stable classification of the group, and will be useful in elucidating the effects the end Ordovician mass extinction had on the evolutionary and biogeographic history of the group. METHODOLOGY/PRINCIPAL FINDINGS: Cladistic parsimony analysis of cheirurid trilobites assigned to the subfamily Sphaerexochinae was conducted to evaluate phylogenetic patterns and produce a hypothesis of relationship for the group. This study utilized the program TNT, and the analysis included thirty-one taxa and thirty-nine characters. The results of this analysis were then used in a Lieberman-modified Brooks Parsimony Analysis to analyze biogeographic patterns during the Ordovician-Silurian. CONCLUSIONS/SIGNIFICANCE: The genus Sphaerexochus was found to be monophyletic, consisting of two smaller clades (one composed entirely of Ordovician species and another composed of Silurian and Ordovician species. By contrast, the genus Kawina was found to be paraphyletic. It is a basal grade that also contains taxa formerly assigned to Cydonocephalus. Phylogenetic patterns suggest Sphaerexochinae is a relatively distinctive trilobite clade because it appears to have been largely unaffected by the end Ordovician mass extinction. Finally, the biogeographic analysis yields two major conclusions about Sphaerexochus biogeography: Bohemia and Avalonia were close enough during the Silurian to exchange taxa; and during the Ordovician there was dispersal between Eastern Laurentia and

  20. Repository site characterization

    International Nuclear Information System (INIS)

    Voss, J.W.; Pentz, D.L.

    1987-01-01

    The characterization of candidate repository sites has a number of programmatic objectives. Principal among these is the acquisition of data: a) to determine the suitability of a site relative to the DOE repository siting guidelines, b) to support model development and calculations to determine the suitability of a site relative to the post closure criteria of the NRC and EPA, c) to support the design of a disposal system, including the waste package and the engineered barrier system, as well as the shafts and underground openings of the repository. In meeting the gaols of site characterization, the authors have an obligation to conduct their investigations within an appropriate budget and schedule. This mandates that a well-constructed and systematic plan for field investigations be developed. Such a plan must fully account for the mechanisms which will control the radiologic performance in the repository. The plan must also flexibly and dynamically respond to the results of each step of field investigation, responding to the spatial variability of earth as well as to enhanced understandings of the performance of the disposal system. Such a plan must ensure that sufficient data are available to support the necessary probabilistic calculations of performance. This paper explores the planning for field data acquisition with specific reference to requirements for demonstrations of the acceptable performance for disposal systems

  1. Phylogenetics and diversification of tanagers (Passeriformes: Thraupidae), the largest radiation of Neotropical songbirds.

    Science.gov (United States)

    Burns, Kevin J; Shultz, Allison J; Title, Pascal O; Mason, Nicholas A; Barker, F Keith; Klicka, John; Lanyon, Scott M; Lovette, Irby J

    2014-06-01

    Thraupidae is the second largest family of birds and represents about 4% of all avian species and 12% of the Neotropical avifauna. Species in this family display a wide range of plumage colors and patterns, foraging behaviors, vocalizations, ecotypes, and habitat preferences. The lack of a complete phylogeny for tanagers has hindered the study of this evolutionary diversity. Here, we present a comprehensive, species-level phylogeny for tanagers using six molecular markers. Our analyses identified 13 major clades of tanagers that we designate as subfamilies. In addition, two species are recognized as distinct branches on the tanager tree. Our topologies disagree in many places with previous estimates of relationships within tanagers, and many long-recognized genera are not monophyletic in our analyses. Our trees identify several cases of convergent evolution in plumage ornaments and bill morphology, and two cases of social mimicry. The phylogeny produced by this study provides a robust framework for studying macroevolutionary patterns and character evolution. We use our new phylogeny to study diversification processes, and find that tanagers show a background model of exponentially declining diversification rates. Thus, the evolution of tanagers began with an initial burst of diversification followed by a rate slowdown. In addition to this background model, two later, clade-specific rate shifts are supported, one increase for Darwin's finches and another increase for some species of Sporophila. The rate of diversification within these two groups is exceptional, even when compared to the overall rapid rate of diversification found within tanagers. This study provides the first robust assessment of diversification rates for the Darwin's finches in the context of the larger group within which they evolved. Copyright © 2014 Elsevier Inc. All rights reserved.

  2. Gas generation in repositories

    International Nuclear Information System (INIS)

    Biddle, P.; Rees, J.H.; McGahan, D.; Rushbrook, P.E.

    1987-09-01

    The nature and quantities of gases likely to be produced by various processes in repositories for low level and intermediate level radioactive wastes are examined in this preliminary study. Many simplifying assumptions are made where published or experimental data is unavailable. The corrosion of the canisters and metallic components in wastes is likely to be the major gas production process in both types of repository. A significant contribution from microbiological activity is expected to occur in low level repositories, predominantly where no cement grouting of the cans has been carried out. A number of areas for further research, required before a more comprehensive study could be carried out, have been identified. (author)

  3. Complex biogeographic scenarios revealed in the diversification of the largest woodpecker radiation in the New World.

    Science.gov (United States)

    Navarro-Sigüenza, Adolfo G; Vázquez-Miranda, Hernán; Hernández-Alonso, Germán; García-Trejo, Erick A; Sánchez-González, Luis A

    2017-07-01

    Phylogenetic relationships and patterns of evolution within Melanerpes, one of the most diverse groups of New World woodpeckers (22-23 lineages), have been complicated due to complex plumages and morphological adaptations. In an attempt to resolve these issues, we obtained sequence data from four nuclear introns and two mitochondrial protein-coding genes for 22 of the 24 currently recognized species in the genus. We performed phylogenetic analyses involving Maximum Likelihood and Bayesian Inference, species-tree divergence dating, and biogeographic reconstructions. Tree topologies from the concatenated and species-tree analyses of the mtDNA and nDNA showed broadly similar patterns, with three relatively well-supported groups apparent: (a) the Sphyrapicus clade (four species); (b) the typical Melanerpes clade, which includes temperate and subtropical dry forest black-backed species; and (c) the mostly barred-backed species, here referred to as the "Centurus" clade. The phylogenetic position of Melanerpes superciliaris regarding the rest of Melanerpes is ambiguous as it is recovered as sister to the rest of Melanerpes or as sister to a group including Sphyrapicus+Melanerpes. Our species tree estimations recovered the same well-delimited highly-supported clades. Geographic range evolution (estimated in BioGeoBEARS) was best explained by a DIVALIKE+j model, which includes vicariance, founder effect speciation, and anagenetic dispersal (range expansion) as important processes involved in the diversification of the largest radiation of woodpeckers in the New World. Copyright © 2017 Elsevier Inc. All rights reserved.

  4. SUBSURFACE REPOSITORY INTEGRATED CONTROL SYSTEM DESIGN

    International Nuclear Information System (INIS)

    Randle, D.C.

    2000-01-01

    The primary purpose of this document is to develop a preliminary high-level functional and physical control system architecture for the potential repository at Yucca Mountain. This document outlines an overall control system concept that encompasses and integrates the many diverse process and communication systems being developed for the subsurface repository design. This document presents integrated design concepts for monitoring and controlling the diverse set of subsurface operations. The Subsurface Repository Integrated Control System design will be composed of a series of diverse process systems and communication networks. The subsurface repository design contains many systems related to instrumentation and control (I andC) for both repository development and waste emplacement operations. These systems include waste emplacement, waste retrieval, ventilation, radiological and air monitoring, rail transportation, construction development, utility systems (electrical, lighting, water, compressed air, etc.), fire protection, backfill emplacement, and performance confirmation. Each of these systems involves some level of I andC and will typically be integrated over a data communications network throughout the subsurface facility. The subsurface I andC systems will also interface with multiple surface-based systems such as site operations, rail transportation, security and safeguards, and electrical/piped utilities. In addition to the I andC systems, the subsurface repository design also contains systems related to voice and video communications. The components for each of these systems will be distributed and linked over voice and video communication networks throughout the subsurface facility. The scope and primary objectives of this design analysis are to: (1) Identify preliminary system-level functions and interfaces (Section 6.2). (2) Examine the overall system complexity and determine how and on what levels the engineered process systems will be monitored

  5. Preliminary design of the repository. Stage 2

    International Nuclear Information System (INIS)

    Saanio, T.; Kirkkomaeki, T.; Keto, P.; Kukkola, T.; Raiko, H.

    2007-04-01

    Spent nuclear fuel from Finnish nuclear power plants will be disposed of in deep bedrock in Olkiluoto, Eurajoki. The repository is planned to be excavated at a depth of 400 - 500 metres. Access routes to the repository include a 1:10 inclined access tunnel, and vertical shafts. The fuel is encapsulated in the encapsulation plant above ground and transferred to the repository in the canister lift. Deposition tunnels, central tunnels and technical rooms are excavated at the disposal level. The canisters are deposited in deposition holes that are covered with bentonite blocks. The deposition holes are bored in the floors of the deposition tunnels. The central tunnel system consists of two parallel central tunnels that are inter-connected at certain distances. Two parallel central tunnels improve the fire safety of the rooms and also allow flexible backfilling and closing of the deposition tunnels in stages at the operational phase of the repository. An underground rock characterization facility, ONKALO, is excavated at the disposal level to support and confirm investigations carried out from above ground. ONKALO is designed so that it can later serve as part of the repository. ONKALO excavations were started in 2004. The repository will be excavated in the 2010s and operation will start in 2020. The fifth nuclear power unit makes the operational phase of the repository very long. Parts of the repository will be excavated and closed over the long operational period. The repository can be constructed at one or several levels. The one-storey alternative is the so-called reference alternative in this preliminary design report. The two-storey alternative is also taken into account in the ONKALO designs. The preliminary designs of the repository are presented as located in Olkiluoto. The location of the repository will be revised when more information on the bedrock has been gained. More detailed data of the circumstances will be obtained from above ground investigations

  6. Preliminary design of the repository, stage 2

    International Nuclear Information System (INIS)

    Saanio, T.; Kirkkomaeki, T.; Keto, P.; Kukkola, T.; Raiko, H.

    2007-01-01

    Spent nuclear fuel from Finnish nuclear power plants will be disposed of in deep bedrock in Olkiluoto, Eurajoki. The repository is planned to be excavated at a depth of 400 - 500 metres. Access routes to the repository include a 1:10 inclined access tunnel, and vertical shafts. The fuel is encapsulated in the encapsulation plant above ground and transferred to the repository in the canister lift. Deposition tunnels, central tunnels and technical rooms are excavated at the disposal level. The canisters are deposited in deposition holes that are covered with bentonite blocks. The deposition holes are bored in the floors of the deposition tunnels. The central tunnel system consists of two parallel central tunnels that are inter-connected at certain distances. Two parallel central tunnels improve the fire safety of the rooms and also allow flexible backfilling and closing of the deposition tunnels in stages at the operational phase of the repository. An underground rock characterization facility, ONKALO, is excavated at the disposal level to support and confirm investigations carried out from above ground. ONKALO is designed so that it can later serve as part of the repository. ONKALO excavations were started in 2004. The repository will be excavated in the 2010s and operation will start in 2020. The fifth nuclear power unit makes the operational phase of the repository very long. Parts of the repository will be excavated and closed over the long operational period. The repository can be constructed at one or several levels. The one-storey alternative is the so-called reference alternative in this preliminary design report. The two-storey alternative is also taken into account in the ONKALO designs. The preliminary designs of the repository are presented as located in Olkiluoto. The location of the repository will be revised when more information on the bedrock has been gained. More detailed data of the circumstances will be obtained from above ground investigations

  7. Nuclear waste repository siting

    International Nuclear Information System (INIS)

    Soloman, B.D.; Cameron, D.M.

    1987-01-01

    This paper discusses the geopolitics of nuclear waste disposal in the USA. Constitutional choice and social equity perspectives are used to argue for a more open and just repository siting program. The authors assert that every potential repository site inevitably contains geologic, environmental or other imperfections and that the political process is the correct one for determining sites selected

  8. Granite-repository - geochemical environment

    International Nuclear Information System (INIS)

    1979-04-01

    Some geochemical data of importance for a radioactive waste repository in hard rock are reviewed. The ground water composition at depth is assessed. The ground water chemistry in the vicinity of uranium ores is discussed. The redox system in Swedish bedrock is described. Influences of extreme climatic changes and of repository mining and construction are also evaluated

  9. Workshop: Creating Your Institutional Research Repository

    KAUST Repository

    Grenz, Daryl M.

    2016-11-08

    In 2002, the Scholarly Publishing and Academic Resources Coalition (SPARC) proposed the concept of an institutional repository to simultaneously disrupt and enhance the state of scholarly communications in the academic world. Thirteen years later, thousands of universities and other institutions have answered this call, but many more have not due to gaps in budgets, awareness and, most of all, practical guidance on creating an institutional repository. This workshop provides you with an essential primer on what it takes to establish a fully-functioning institutional repository. Every aspect of the process will be covered, including policies, procedures, staffing guidelines, workflows and repository technologies.

  10. Main organic materials in a repository for high level radioactive waste

    International Nuclear Information System (INIS)

    Hallbeck, Lotta; Grive, Mireia; Gaona, Xavier; Duro, Lara; Bruno, Jordi

    2007-11-01

    , although the presence of aromatic compounds and PAHs in groundwater is not desirable by itself, they are of no consequence for the long-term performance of the repository. 5. Detergents and lubricants. The same reasoning as for fuels and engine emissions can be applied in this case. The amount of detergents should be minimized, although in the amounts that they are expected to occur, no important impact is foreseen. 6. Materials from human activities. Among them, the ones having potentially a more important effect are fibres from clothes, due to the presence of cellulose, and therefore it is recommended to minimise human-related wastes, although no large amounts of these materials are expected to be present after the repository closure. The effects that organic substances can have in the repository will always depend on the amounts present in the repository after closure. The estimated average concentrations are below 1.7x10 -4 kg/m 3 (0.17 mg/L) of hydrocarbons in the deposition tunnels and less than 8.4x10 -4 kg/m 3 (0.84 mg/L) of carbohydrates, assuming a total saturation in the pore water and an even distribution of the organic materials. This should be compared to the organic material found in groundwater at natural circumstances. At 500 m depth the DOC (dissolved organic carbon) content usually are approximately 0.5.2 mg/L. Three processes are deemed to have the largest possible impact on the performance of the repository: i) Increase of the reducing capacity and decrease of the redox potential in the short-term, and increased rate of depletion of the oxygen trapped during the repository operation stage. ii) Increase in the complexing capacity of the groundwater due to the presence of organic complexants, which is expected to be a process of more relevance in the long-term. Many organic molecules with complexing capacity, such as short organic acids like acetate are, however, oxidised as a consequence of microbial metabolism. The acetate concentration in ground water

  11. Main organic materials in a repository for high level radioactive waste

    Energy Technology Data Exchange (ETDEWEB)

    Hallbeck, Lotta [Vita vegrandis, Hindaas (Sweden); Grive, Mireia; Gaona, Xavier; Duro, Lara; Bruno, Jordi [Enviros Consulting, Valldoreix, Barcelona (Spain)

    2007-11-15

    , although the presence of aromatic compounds and PAHs in groundwater is not desirable by itself, they are of no consequence for the long-term performance of the repository. 5. Detergents and lubricants. The same reasoning as for fuels and engine emissions can be applied in this case. The amount of detergents should be minimized, although in the amounts that they are expected to occur, no important impact is foreseen. 6. Materials from human activities. Among them, the ones having potentially a more important effect are fibres from clothes, due to the presence of cellulose, and therefore it is recommended to minimise human-related wastes, although no large amounts of these materials are expected to be present after the repository closure. The effects that organic substances can have in the repository will always depend on the amounts present in the repository after closure. The estimated average concentrations are below 1.7x10{sup -4} kg/m{sup 3} (0.17 mg/L) of hydrocarbons in the deposition tunnels and less than 8.4x10{sup -4} kg/m{sup 3} (0.84 mg/L) of carbohydrates, assuming a total saturation in the pore water and an even distribution of the organic materials. This should be compared to the organic material found in groundwater at natural circumstances. At 500 m depth the DOC (dissolved organic carbon) content usually are approximately 0.5.2 mg/L. Three processes are deemed to have the largest possible impact on the performance of the repository: i) Increase of the reducing capacity and decrease of the redox potential in the short-term, and increased rate of depletion of the oxygen trapped during the repository operation stage. ii) Increase in the complexing capacity of the groundwater due to the presence of organic complexants, which is expected to be a process of more relevance in the long-term. Many organic molecules with complexing capacity, such as short organic acids like acetate are, however, oxidised as a consequence of microbial metabolism. The acetate

  12. Safeguards for geological repositories

    International Nuclear Information System (INIS)

    Fattah, A.

    2000-01-01

    Direct disposal of spent nuclear fuel in geological repositories is a recognised option for closing nuclear fuel cycles. Geological repositories are at present in stages of development in a number of countries and are expected to be built and operated early next century. A State usually has an obligation to safely store any nuclear material, which is considered unsuitable to re-enter the nuclear fuel cycle, isolated from the biosphere. In conjunction with this, physical protection has to be accounted for to prevent inadvertent access to such material. In addition to these two criteria - which are fully under the State's jurisdiction - a third criterion reflecting international non-proliferation commitments needs to be addressed. Under comprehensive safeguards agreements a State concedes verification of nuclear material for safeguards purposes to the IAEA. The Agency can thus provide assurance to the international community that such nuclear material has been used for peaceful purposes only as declared by the State. It must be emphasised that all three criteria mentioned constitute a 'unit'. None can be sacrificed for the sake of the other, but compromises may have to be sought in order to make their combination as effective as possible. Based on comprehensive safeguards agreements signed and ratified by the State, safeguards can be terminated only when the material has been consumed or diluted in such a way that it can no longer be utilised for any nuclear activities or has become practicably irrecoverable. As such safeguards for nuclear material in geological repositories have to be continued even after the repository has been back-filled and sealed. The effective application of safeguards must assure continuity-of-knowledge that the nuclear material in the repository has not been diverted for an unknown purpose. The nuclear material disposed in a geological repository may eventually have a higher and long term proliferation risk because the inventory is

  13. Modelling saline intrusion for repository performance assessment

    International Nuclear Information System (INIS)

    Jackson, C.P.

    1989-04-01

    UK Nirex Ltd are currently considering the possibility of disposal of radioactive waste by burial in deep underground repositories. The natural pathway for radionuclides from such a repository to return to Man's immediate environment (the biosphere) is via groundwater. Thus analyses of the groundwater flow in the neighbourhood of a possible repository, and consequent radionuclide transport form an important part of a performance assessment for a repository. Some of the areas in the UK that might be considered as possible locations for a repository are near the coast. If a repository is located in a coastal region seawater may intrude into the groundwater flow system. As seawater is denser than fresh water buoyancy forces acting on the intruding saline water may have significant effects on the groundwater flow system, and consequently on the time for radionuclides to return to the biosphere. Further, the chemistry of the repository near-field may be strongly influenced by the salinity of the groundwater. It is therefore important for Nirex to have a capability for reliably modelling saline intrusion to an appropriate degree of accuracy in order to make performance assessments for a repository in a coastal region. This report describes work undertaken in the Nirex Research programme to provide such a capability. (author)

  14. Analisis Konten dan Kebijakan Akses Institutional Repository

    Directory of Open Access Journals (Sweden)

    Amirul Ulum

    2016-07-01

    Abstract; Institutional repository has become a major concern of higher education in Indonesia. The number of institutional respository was increased, one of the reason is the ranking web of repositories has been conducted by the Cybermetrics Lab in 2008. At that time, many institutions started to build institutional repository in order to manage the scientific work and also trying to reach the better ranks. Meanwhile, it is an achievement of institution performance which can be promote and increase visibility for the institution. University of Surabaya has also developed the institutional repository and managed by the library. The aims of this study is to analyze the content availability and access policies defined by the University of Surabaya repository  providing services to the academic community and external users. The method used in this study by using observations of the institutional repository University of Surabaya with a literature review to clarify the analysis of the content and access policies. The results of this study indicate that the library's role is has the authority to manage the scientific work of academic community can be done through the institutional repository. However there is still need for library to be proactive to communicate regulations on mandatory deposit of scientific work and create intensive promotion of the institutional repository.

  15. Process model repositories and PNML

    NARCIS (Netherlands)

    Hee, van K.M.; Post, R.D.J.; Somers, L.J.A.M.; Werf, van der J.M.E.M.; Kindler, E.

    2004-01-01

    Bringing system and process models together in repositories facilitates the interchange of model information between modelling tools, and allows the combination and interlinking of complementary models. Petriweb is a web application for managing such repositories. It supports hierarchical process

  16. Radioactive waste repository study

    International Nuclear Information System (INIS)

    1978-11-01

    This is the second part of a report of a preliminary study for AECL. It considers the requirements for an underground waste repository for the disposal of wastes produced by the Canadian Nuclear Fuel Program. The following topics are discussed with reference to the repository: 1) geotechnical assessment, 2) hydrogeology and waste containment, 3) thermal loading and 4) rock mechanics. (author)

  17. Open DOAR the Directory of Open Access Repositories

    CERN Multimedia

    CERN. Geneva

    2005-01-01

    The last year has seen wide-spread growth in the idea of using open access repositories as a part of a research institution's accepted infrastructure. Policy development from institutions and funding bodies has also supported the growth of the repository network. The next stage of expansion will be in the provision of services and cross-repository facilities and resources. Of course, it is hoped that these will then establish a feed-back loop to encourage repository population and further repository establishment, as the potential of open access to research materials is realised. The growth of repositories has been organic, with a variety of different repositories based in departments, institutions, funding agencies or subject communities, with a range of content, both in type and subject. Existing repositories are expanding their holdings, from eprints to associated research data-sets, or with learning objects and multimedia material. This presentation will look at the development of the Directory of Open Ac...

  18. Evaluasi Website Repositori Institusi Universitas Surabaya

    Directory of Open Access Journals (Sweden)

    Amirul Ulum

    2015-11-01

    Full Text Available The  development  of  institutional  repositories  (IRs  in Indonesia within the broader framework of open access has significant impact on preserving intellectual capital and scholarly communication. Institutional  repositories  play  a  fundamental  role  in  centralizing, preserving,  and  making  accessible  institution’s  intellectual  capital. Evaluation of the system is to determine the functionality the system to meet the users need. Using a descriptive analysis this study wants to evaluate institutional repositories of University of Surabaya. The result is usefull for institution to develop the repository systems.

  19. Untangling hybrid phylogenetic signals: horizontal gene transfer and artifacts of phylogenetic reconstruction.

    Science.gov (United States)

    Beiko, Robert G; Ragan, Mark A

    2009-01-01

    Phylogenomic methods can be used to investigate the tangled evolutionary relationships among genomes. Building 'all the trees of all the genes' can potentially identify common pathways of horizontal gene transfer (HGT) among taxa at varying levels of phylogenetic depth. Phylogenetic affinities can be aggregated and merged with the information about genetic linkage and biochemical function to examine hypotheses of adaptive evolution via HGT. Additionally, the use of many genetic data sets increases the power of statistical tests for phylogenetic artifacts. However, large-scale phylogenetic analyses pose several challenges, including the necessary abandonment of manual validation techniques, the need to translate inferred phylogenetic discordance into inferred HGT events, and the challenges involved in aggregating results from search-based inference methods. In this chapter we describe a tree search procedure to recover the most parsimonious pathways of HGT, and examine some of the assumptions that are made by this method.

  20. The Shared Health Research Information Network (SHRINE): a prototype federated query tool for clinical data repositories.

    Science.gov (United States)

    Weber, Griffin M; Murphy, Shawn N; McMurry, Andrew J; Macfadden, Douglas; Nigrin, Daniel J; Churchill, Susanne; Kohane, Isaac S

    2009-01-01

    The authors developed a prototype Shared Health Research Information Network (SHRINE) to identify the technical, regulatory, and political challenges of creating a federated query tool for clinical data repositories. Separate Institutional Review Boards (IRBs) at Harvard's three largest affiliated health centers approved use of their data, and the Harvard Medical School IRB approved building a Query Aggregator Interface that can simultaneously send queries to each hospital and display aggregate counts of the number of matching patients. Our experience creating three local repositories using the open source Informatics for Integrating Biology and the Bedside (i2b2) platform can be used as a road map for other institutions. The authors are actively working with the IRBs and regulatory groups to develop procedures that will ultimately allow investigators to obtain identified patient data and biomaterials through SHRINE. This will guide us in creating a future technical architecture that is scalable to a national level, compliant with ethical guidelines, and protective of the interests of the participating hospitals.

  1. Alternative measure for performance of HLW geologic repository

    International Nuclear Information System (INIS)

    Joonhang, Ahn; Chambre, P.L.

    2001-01-01

    A repository performance model that can show effects of canister multiplicity and repository configuration has been developed. Masses of a radionuclide in the repository and in the far field are proposed as performance measures. Canister multiplicity has significant effects on the release of long-lived radionuclides from the repository. As more canisters are included in the same water stream, the radionuclide concentration in the stream increases, but becomes independent of the number of canisters for sufficiently many canisters. Effects of reduction of radionuclide mass in the repository on the repository performance are clearly observed if the canister multiplicity is taken into account and the mass-based measures are applied. (author)

  2. Accelerator Physics Code Web Repository

    CERN Document Server

    Zimmermann, Frank; Bellodi, G; Benedetto, E; Dorda, U; Giovannozzi, Massimo; Papaphilippou, Y; Pieloni, T; Ruggiero, F; Rumolo, G; Schmidt, F; Todesco, E; Zotter, Bruno W; Payet, J; Bartolini, R; Farvacque, L; Sen, T; Chin, Y H; Ohmi, K; Oide, K; Furman, M; Qiang, J; Sabbi, G L; Seidl, P A; Vay, J L; Friedman, A; Grote, D P; Cousineau, S M; Danilov, V; Holmes, J A; Shishlo, A; Kim, E S; Cai, Y; Pivi, M; Kaltchev, D I; Abell, D T; Katsouleas, Thomas C; Boine-Frankenheim, O; Franchetti, G; Hofmann, I; Machida, S; Wei, J

    2006-01-01

    In the framework of the CARE HHH European Network, we have developed a web-based dynamic acceleratorphysics code repository. We describe the design, structure and contents of this repository, illustrate its usage, and discuss our future plans, with emphasis on code benchmarking.

  3. ACCELERATION PHYSICS CODE WEB REPOSITORY.

    Energy Technology Data Exchange (ETDEWEB)

    WEI, J.

    2006-06-26

    In the framework of the CARE HHH European Network, we have developed a web-based dynamic accelerator-physics code repository. We describe the design, structure and contents of this repository, illustrate its usage, and discuss our future plans, with emphasis on code benchmarking.

  4. Consistency of Network Traffic Repositories: An Overview

    NARCIS (Netherlands)

    Lastdrager, E.; Lastdrager, E.E.H.; Pras, Aiko

    2009-01-01

    Traffc repositories with TCP/IP header information are very important for network analysis. Researchers often assume that such repositories reliably represent all traffc that has been flowing over the network; little thoughts are made regarding the consistency of these repositories. Still, for

  5. 48 CFR 227.7207 - Contractor data repositories.

    Science.gov (United States)

    2010-10-01

    ... repositories. 227.7207 Section 227.7207 Federal Acquisition Regulations System DEFENSE ACQUISITION REGULATIONS... Computer Software and Computer Software Documentation 227.7207 Contractor data repositories. Follow 227.7108 when it is in the Government's interests to have a data repository include computer software or to...

  6. Reference repository design concept for bedded salt

    Energy Technology Data Exchange (ETDEWEB)

    Carpenter, D.W.; Martin, R.W.

    1980-10-08

    A reference design concept is presented for the subsurface portions of a nuclear waste repository in bedded salt. General geologic, geotechnical, hydrologic and geochemical data as well as descriptions of the physical systems are provided for use on generic analyses of the pre- and post-sealing performance of repositories in this geologic medium. The geology of bedded salt deposits and the regional and repository horizon stratigraphy are discussed. Structural features of salt beds including discontinuities and dissolution features are presented and their effect on repository performance is discussed. Seismic hazards and the potential effects of earthquakes on underground repositories are presented. The effect on structural stability and worker safety during construction from hydrocarbon and inorganic gases is described. Geohydrologic considerations including regional hydrology, repository scale hydrology and several hydrological failure modes are presented in detail as well as the hydrological considerations that effect repository design. Operational phase performance is discussed with respect to operations, ventilation system, shaft conveyances, waste handling and retrieval systems and receival rates of nuclear waste. Performance analysis of the post sealing period of a nuclear repository is discussed, and parameters to be used in such an analysis are presented along with regulatory constraints. Some judgements are made regarding hydrologic failure scenarios. Finally, the design and licensing process, consistent with the current licensing procedure is described in a format that can be easily understood.

  7. Reference repository design concept for bedded salt

    International Nuclear Information System (INIS)

    Carpenter, D.W.; Martin, R.W.

    1980-01-01

    A reference design concept is presented for the subsurface portions of a nuclear waste repository in bedded salt. General geologic, geotechnical, hydrologic and geochemical data as well as descriptions of the physical systems are provided for use on generic analyses of the pre- and post-sealing performance of repositories in this geologic medium. The geology of bedded salt deposits and the regional and repository horizon stratigraphy are discussed. Structural features of salt beds including discontinuities and dissolution features are presented and their effect on repository performance is discussed. Seismic hazards and the potential effects of earthquakes on underground repositories are presented. The effect on structural stability and worker safety during construction from hydrocarbon and inorganic gases is described. Geohydrologic considerations including regional hydrology, repository scale hydrology and several hydrological failure modes are presented in detail as well as the hydrological considerations that effect repository design. Operational phase performance is discussed with respect to operations, ventilation system, shaft conveyances, waste handling and retrieval systems and receival rates of nuclear waste. Performance analysis of the post sealing period of a nuclear repository is discussed, and parameters to be used in such an analysis are presented along with regulatory constraints. Some judgements are made regarding hydrologic failure scenarios. Finally, the design and licensing process, consistent with the current licensing procedure is described in a format that can be easily understood

  8. Hydrothermal conditions around a radioactive waste repository

    International Nuclear Information System (INIS)

    Thunvik, R.; Braester, C.

    1981-12-01

    Numerical solutions for the hydrothermal conditions around a hard rock repository for nuclear fuel waste are presented. The objective of the present investigation is to illustrate in principle the effect of heat released from a hypothetical radioactive waste repository with regard to anisotropy in the rock permeability. Permeability and porosity are assumed to be constant or to decrease exponentially with depth. The hypothetical repository is situated below a horizontal ground surface or below the crest of a hill, and it is assumed that the water table follows the topography. Major interest in the analysis is directed towards the influence of anisotropy in the permeability on the flow patterns and travel times for water particles, being traced from the repository to the ground surface. The presented results show that anisotropy in the permeability may have a significant influence on the flow conditions around the repository and subsequently also on the travel times from the repository. (Authors)

  9. Multi-barrier system model of the geological repository for spent nuclear fuel

    International Nuclear Information System (INIS)

    Barátová, D.; Necas, V.

    2016-01-01

    The results on the analysis of radionuclide release from the geosphere of hypothetical repository in crystalline rocks are presented. Radionuclides with poor retentive properties (C-14, I-129, Cl-36, Cs-135), represent the largest contribution to the total release rate from the geosphere. A sensitivity analysis of selected geosphere parameters was also performed to evaluate an impact of uncertainties on the total maximum release rate from the geosphere. The results show that the data uncertainty related to the transmissivity distribution of individual transport pathways has the greatest impact on the total maximum release rate from the geosphere. The calculations of release rates were carried out for one disposal container using the simulation software GoldSim. (authors)

  10. Nonbinary Tree-Based Phylogenetic Networks.

    Science.gov (United States)

    Jetten, Laura; van Iersel, Leo

    2018-01-01

    Rooted phylogenetic networks are used to describe evolutionary histories that contain non-treelike evolutionary events such as hybridization and horizontal gene transfer. In some cases, such histories can be described by a phylogenetic base-tree with additional linking arcs, which can, for example, represent gene transfer events. Such phylogenetic networks are called tree-based. Here, we consider two possible generalizations of this concept to nonbinary networks, which we call tree-based and strictly-tree-based nonbinary phylogenetic networks. We give simple graph-theoretic characterizations of tree-based and strictly-tree-based nonbinary phylogenetic networks. Moreover, we show for each of these two classes that it can be decided in polynomial time whether a given network is contained in the class. Our approach also provides a new view on tree-based binary phylogenetic networks. Finally, we discuss two examples of nonbinary phylogenetic networks in biology and show how our results can be applied to them.

  11. Repository operational criteria comparative analysis

    International Nuclear Information System (INIS)

    Hageman, J.P.; Chowdhury, A.H.

    1994-06-01

    The objective of the ''Repository Operational Criteria (ROC) Feasibility Studies'' (or ROC task) was to conduct comprehensive and integrated analyses of repository design, construction, and operations criteria in 10 CFR Part 60 regulations considering the interfaces among the components of the regulations and impacts of any potential changes to those regulations. The ROC task addresses regulatory criteria and uncertainties related to the preclosure aspects of the geologic repository. Those parts of 10 CFR Part 60 that require routine guidance or minor changes to the rule were addressed in Hageman and Chowdhury, 1992. The ROC task shows a possible need for further regulatory clarity, by major changes to the rule, related to the design bases and siting of a geologic repository operations area and radiological emergency planning in order to assure defense-in-depth. The analyses, presented in this report, resulted in the development and refinement of regulatory concepts and their supporting rationale for recommendations for potential major changes to 10 CFR Pan 0 regulations

  12. Phylogenetic and Functional Diversity of Fleshy-Fruited Plants Are Positively Associated with Seedling Diversity in a Tropical Montane Forest

    Directory of Open Access Journals (Sweden)

    Marcia C. Muñoz

    2017-08-01

    Full Text Available Mutualistic interactions between plants and animals can affect both plant and animal communities, and potentially leave imprints on plant demography. Yet, no study has simultaneously tested how trait variation in plant resources shapes the diversity of animal consumers, and how these interactions influence seedling recruitment. Here, we analyzed whether (i phylogenetic diversity and functional diversity of fruiting plants were correlated with the corresponding diversity of frugivorous birds, and (ii whether phylogenetic diversity and functional identity of plant and bird communities influenced the corresponding diversity and identity of seedling communities. We recorded mutualistic interactions between fleshy-fruited plants and frugivorous birds and seedling communities in 10 plots along an elevational gradient in the Colombian Andes. We built a phylogeny for plants/seedlings and birds and measured relevant morphological plant and bird traits that influence plant-bird interactions and seedling recruitment. We found that phylogenetic diversity and functional diversity of frugivorous birds were positively associated with the corresponding diversities of fruiting plants, consistent with a bottom-up effect of plants on birds. Moreover, the phylogenetic diversity of seedlings was related to the phylogenetic diversity of plants, but was unrelated to the phylogenetic diversity of frugivorous birds, suggesting that top-down effects of animals on seedlings were weak. Mean seed mass of seedling communities was positively associated with the mean fruit mass of plants, but was not associated with the mean avian body mass in the frugivore communities. Our study shows that variation in the traits of fleshy-fruited plants was associated with the diversity of frugivorous birds and affected the future trajectory of seedling recruitment, whereas the morphological traits of animal seed dispersers were unrelated to the phylogenetic and functional structure of

  13. What do we mean by a cold repository?

    International Nuclear Information System (INIS)

    Halsey, W.G.

    1994-01-01

    The topic of thermal loading of a potential repository at Yucca Mountain in Nevada has been the subject of intense discussion within the project technical community. While terms such as ''Hot Repository'' and ''Cold Repository'' are frequently used, they have not been clearly defined. In particular, the definition of a cold repository has remained the opinion of each individual. This has led to confusion and misunderstanding. In this paper, a number of observed definitions for a cold repository are discussed along with the technical implications, assumptions and inconsistencies. Finally, a common language is suggested

  14. A phylogenetic blueprint for a modern whale.

    Science.gov (United States)

    Gatesy, John; Geisler, Jonathan H; Chang, Joseph; Buell, Carl; Berta, Annalisa; Meredith, Robert W; Springer, Mark S; McGowen, Michael R

    2013-02-01

    The emergence of Cetacea in the Paleogene represents one of the most profound macroevolutionary transitions within Mammalia. The move from a terrestrial habitat to a committed aquatic lifestyle engendered wholesale changes in anatomy, physiology, and behavior. The results of this remarkable transformation are extant whales that include the largest, biggest brained, fastest swimming, loudest, deepest diving mammals, some of which can detect prey with a sophisticated echolocation system (Odontoceti - toothed whales), and others that batch feed using racks of baleen (Mysticeti - baleen whales). A broad-scale reconstruction of the evolutionary remodeling that culminated in extant cetaceans has not yet been based on integration of genomic and paleontological information. Here, we first place Cetacea relative to extant mammalian diversity, and assess the distribution of support among molecular datasets for relationships within Artiodactyla (even-toed ungulates, including Cetacea). We then merge trees derived from three large concatenations of molecular and fossil data to yield a composite hypothesis that encompasses many critical events in the evolutionary history of Cetacea. By combining diverse evidence, we infer a phylogenetic blueprint that outlines the stepwise evolutionary development of modern whales. This hypothesis represents a starting point for more detailed, comprehensive phylogenetic reconstructions in the future, and also highlights the synergistic interaction between modern (genomic) and traditional (morphological+paleontological) approaches that ultimately must be exploited to provide a rich understanding of evolutionary history across the entire tree of Life. Copyright © 2012 Elsevier Inc. All rights reserved.

  15. Radioactive waste repository study

    International Nuclear Information System (INIS)

    1978-11-01

    This is the first part of a report of a preliminary study for Atomic Energy of Canada Limited. It considers the requirements for an underground waste repository for the disposal of wastes produced by the Canadian Nuclear Fuel Program. The following topics are discussed with reference to the repository: 1) underground layout, 2) cost estimates, 3) waste handling, 4) retrievability, decommissioning, sealing and monitoring, and 5) research and design engineering requirements. (author)

  16. MAJOR REPOSITORY DESIGN ISSUES

    International Nuclear Information System (INIS)

    JACK N. BAILEY, DWAYNE CHESTNUT, JAMES COMPTON AND RICHARD D. SNELL

    1997-01-01

    The Yucca Mountain Project is focused on producing a four-part viability assessment in late FY98. Its four components (design, performance assessment, cost estimate, and licensing development plan) must be consistent. As a tool to compare design and performance assessment options, a series of repository pictures were developed for the sequential time phases of a repository. The boundaries of the time phases correspond to evolution in the engineered barrier system (EBS)

  17. FunGene: the functional gene pipeline and repository.

    Science.gov (United States)

    Fish, Jordan A; Chai, Benli; Wang, Qiong; Sun, Yanni; Brown, C Titus; Tiedje, James M; Cole, James R

    2013-01-01

    Ribosomal RNA genes have become the standard molecular markers for microbial community analysis for good reasons, including universal occurrence in cellular organisms, availability of large databases, and ease of rRNA gene region amplification and analysis. As markers, however, rRNA genes have some significant limitations. The rRNA genes are often present in multiple copies, unlike most protein-coding genes. The slow rate of change in rRNA genes means that multiple species sometimes share identical 16S rRNA gene sequences, while many more species share identical sequences in the short 16S rRNA regions commonly analyzed. In addition, the genes involved in many important processes are not distributed in a phylogenetically coherent manner, potentially due to gene loss or horizontal gene transfer. While rRNA genes remain the most commonly used markers, key genes in ecologically important pathways, e.g., those involved in carbon and nitrogen cycling, can provide important insights into community composition and function not obtainable through rRNA analysis. However, working with ecofunctional gene data requires some tools beyond those required for rRNA analysis. To address this, our Functional Gene Pipeline and Repository (FunGene; http://fungene.cme.msu.edu/) offers databases of many common ecofunctional genes and proteins, as well as integrated tools that allow researchers to browse these collections and choose subsets for further analysis, build phylogenetic trees, test primers and probes for coverage, and download aligned sequences. Additional FunGene tools are specialized to process coding gene amplicon data. For example, FrameBot produces frameshift-corrected protein and DNA sequences from raw reads while finding the most closely related protein reference sequence. These tools can help provide better insight into microbial communities by directly studying key genes involved in important ecological processes.

  18. FunGene: the Functional Gene Pipeline and Repository

    Directory of Open Access Journals (Sweden)

    Jordan A. Fish

    2013-10-01

    Full Text Available Ribosomal RNA genes have become the standard molecular markers for microbial community analysis for good reasons, including universal occurrence in cellular organisms, availability of large databases, and ease of rRNA gene region amplification and analysis. As markers, however, rRNA genes have some significant limitations. The rRNA genes are often present in multiple copies, unlike most protein-coding genes. The slow rate of change in rRNA genes means that multiple species sometimes share identical 16S rRNA gene sequences, while many more species share identical sequences in the short 16S rRNA regions commonly analyzed. In addition, the genes involved in many important processes are not distributed in a phylogenetically coherent manner, potentially due to gene loss or horizontal gene transfer.While rRNA genes remain the most commonly used markers, key genes in ecologically important pathways, e.g., those involved in carbon and nitrogen cycling, can provide important insights into community composition and function not obtainable through rRNA analysis. However, working with ecofunctional gene data requires some tools beyond those required for rRNA analysis. To address this, our Functional Gene Pipeline and Repository (FunGene; http://fungene.cme.msu.edu/ offers databases of many common ecofunctional genes and proteins, as well as integrated tools that allow researchers to browse these collections and choose subsets for further analysis, build phylogenetic trees, test primers and probes for coverage, and download aligned sequences. Additional FunGene tools are specialized to process coding gene amplicon data. For example, FrameBot produces frameshift-corrected protein and DNA sequences from raw reads while finding the most closely related protein reference sequence. These tools can help provide better insight into microbial communities by directly studying key genes involved in important ecological processes.

  19. An analysis of repository waste-handling operations

    International Nuclear Information System (INIS)

    Dennis, A.W.

    1990-09-01

    This report has been prepared to document the operational analysis of waste-handling facilities at a geologic repository for high-level nuclear waste. The site currently under investigation for the geologic repository is located at Yucca Mountain, Nye County, Nevada. The repository waste-handling operations have been identified and analyzed for the year 2011, a steady-state year during which the repository receives spent nuclear fuel containing the equivalent of 3000 metric tons of uranium (MTU) and defense high-level waste containing the equivalent of 400 MTU. As a result of this analysis, it has been determined that the waste-handling facilities are adequate to receive, prepare, store, and emplace the projected quantity of waste on an annual basis. In addition, several areas have been identified where additional work is required. The recommendations for future work have been divided into three categories: items that affect the total waste management system, operations within the repository boundary, and the methodology used to perform operational analyses for repository designs. 7 refs., 48 figs., 11 tabs

  20. Biosphere modelling for a HLW repository - scenario and parameter variations

    International Nuclear Information System (INIS)

    Grogan, H.

    1985-03-01

    In Switzerland high-level radioactive wastes have been considered for disposal in deep-lying crystalline formations. The individual doses to man resulting from radionuclides entering the biosphere via groundwater transport are calculated. The main recipient area modelled, which constitutes the base case, is a broad gravel terrace sited along the south bank of the river Rhine. An alternative recipient region, a small valley with a well, is also modelled. A number of parameter variations are performed in order to ascertain their impact on the doses. Finally two scenario changes are modelled somewhat simplistically, these consider different prevailing climates, namely tundra and a warmer climate than present. In the base case negligibly low doses to man in the long term, resulting from the existence of a HLW repository have been calculated. Cs-135 results in the largest dose (8.4E-7 mrem/y at 6.1E+6 y) while Np-237 gives the largest dose from the actinides (3.6E-8 mrem/y). The response of the model to parameter variations cannot be easily predicted due to non-linear coupling of many of the parameters. However, the calculated doses were negligibly low in all cases as were those resulting from the two scenario variations. (author)

  1. Phylogenetic analysis of methanogens from the bovine rumen

    Directory of Open Access Journals (Sweden)

    Forster Robert J

    2001-05-01

    Full Text Available Abstract Background Interest in methanogens from ruminants has resulted from the role of methane in global warming and from the fact that cattle typically lose 6 % of ingested energy as methane. Several species of methanogens have been isolated from ruminants. However they are difficult to culture, few have been consistently found in high numbers, and it is likely that major species of rumen methanogens are yet to be identified. Results Total DNA from clarified bovine rumen fluid was amplified using primers specific for Archaeal 16S rRNA gene sequences (rDNA. Phylogenetic analysis of 41 rDNA sequences identified three clusters of methanogens. The largest cluster contained two distinct subclusters with rDNA sequences similar to Methanobrevibacter ruminantium 16S rDNA. A second cluster contained sequences related to 16S rDNA from Methanosphaera stadtmanae, an organism not previously described in the rumen. The third cluster contained rDNA sequences that may form a novel group of rumen methanogens. Conclusions The current set of 16S rRNA hybridization probes targeting methanogenic Archaea does not cover the phylogenetic diversity present in the rumen and possibly other gastro-intestinal tract environments. New probes and quantitative PCR assays are needed to determine the distribution of the newly identified methanogen clusters in rumen microbial communities.

  2. Memory provisions for the Manche Surface Repository

    International Nuclear Information System (INIS)

    Dumont, Jean-Noel; Espiet-Subert, Florence

    2015-01-01

    The French La Manche repository site received its last radioactive waste package in 1994. In 2003, the official surveillance phase of the closed repository started under the supervision of Andra (the national industrial operator), the French Nuclear Safety Authority (ASN) and society (e.g. the local municipalities). Florence Espiet explained that information on the existence of the repository, its content, how it was operated and how it works needs to be preserved. It also is planned to review the information periodically for a minimum of 300 years. She described the creation of two documents on memory (a detailed and a summary one), both on permanent paper, and the preservation of the land registration. The latter constitutes 'passive' provisions for preserving memory. In addition, a number of 'active' provisions are and will be put in place: guided visits, exhibitions, partnerships with organisations dealing with memory preservation, and the creation of a think tank. The latter consists of local citizens and politicians, retired employees from Andra and artists that meet several times a year and reflect on memory preservation from the perspective of, for instance, local history, education, arts and rituals. Finally, two types of markers will be used to preserve the repository's memory: i) three herbaria cataloguing the plants growing on the site of the repository, including a very short description of the repository, will be stored at different sites in France; ii) a stele indicating the main characteristics of the repository, potentially linked to an art work, will be erected at the repository

  3. Evolution of oil-producing trichomes in Sisyrinchium (Iridaceae): insights from the first comprehensive phylogenetic analysis of the genus

    Science.gov (United States)

    Chauveau, Olivier; Eggers, Lilian; Raquin, Christian; Silvério, Adriano; Brown, Spencer; Couloux, Arnaud; Cruaud, Corine; Kaltchuk-Santos, Eliane; Yockteng, Roxana; Souza-Chies, Tatiana T.; Nadot, Sophie

    2011-01-01

    Background and Aims Sisyrinchium (Iridaceae: Iridoideae: Sisyrinchieae) is one of the largest, most widespread and most taxonomically complex genera in Iridaceae, with all species except one native to the American continent. Phylogenetic relationships within the genus were investigated and the evolution of oil-producing structures related to specialized oil-bee pollination examined. Methods Phylogenetic analyses based on eight molecular markers obtained from 101 Sisyrinchium accessions representing 85 species were conducted in the first extensive phylogenetic analysis of the genus. Total evidence analyses confirmed the monophyly of the genus and retrieved nine major clades weakly connected to the subdivisions previously recognized. The resulting phylogenetic hypothesis was used to reconstruct biogeographical patterns, and to trace the evolutionary origin of glandular trichomes present in the flowers of several species. Key Results and Conclusions Glandular trichomes evolved three times independently in the genus. In two cases, these glandular trichomes are oil-secreting, suggesting that the corresponding flowers might be pollinated by oil-bees. Biogeographical patterns indicate expansions from Central America and the northern Andes to the subandean ranges between Chile and Argentina and to the extended area of the Paraná river basin. The distribution of oil-flower species across the phylogenetic trees suggests that oil-producing trichomes may have played a key role in the diversification of the genus, a hypothesis that requires future testing. PMID:21527419

  4. Final repository for spent nuclear fuel. Underground design Forsmark, Layout D1

    International Nuclear Information System (INIS)

    Brantberger, Martin; Zetterqvist, Anders; Arnbjerg-Nielsen, Torben; Olsson, Tommy; Outters, Nils; Syrjaenen, Pauli

    2006-04-01

    This report comprises the design step D1 related to the underground design for a deep repository located at the Forsmark site. The design is based on the Site Descriptive Model Forsmark v1.2. All studies have been focussed at an area southeast of the Forsmark nuclear plant, which has been considered to be the most promising area for hosting the repository. SKB has developed guidelines for the design of the repository, which further describes the methodology applied for the studies. From these guidelines the following basic objectives for the design step D1 are summarized: to determine whether the final repository can be accommodated within the studied site; to identify site-specific facility critical issues; to test and evaluate the design methodology; to provide feedback to: the design organisation regarding additional studies that needs to be done; the site investigation and modelling organization regarding further investigations required; and the safety assessment team. The possible locations for a tentative deep repository are analysed in Chapter 3 of the report. The most promising area for the repository (denoted 'priority site') has been defined by SKB to be located southeast of the Forsmark nuclear plant and northwest of the gently dipping deformation zone ZFMNE00A2. Regarding the repository depth, present knowledge acquired from the site investigations indicates that it is possible to locate the repository at all stipulated depths according to SKB, that is between 400 m and 700 m depth. The preliminary assessment made in Chapter 3 clearly demonstrates that the repository can be accommodated within the 'priority site'. The potential to accommodate the repository is essentially the same for both 400 m and 500 m depths. The design of the deposition areas is reported in Chapter 4, which includes the design of layout features for all tunnels and deposition holes, orientation of tunnels, calculation of anticipated loss of deposition holes due to the applied

  5. Final repository for spent nuclear fuel. Underground design Forsmark, Layout D1

    Energy Technology Data Exchange (ETDEWEB)

    Brantberger, Martin; Zetterqvist, Anders [Ramboell Sweden AB, Stockholm (Sweden); Arnbjerg-Nielsen, Torben [Ramboell Denmark A/S, Virum (Denmark); Olsson, Tommy [IandT Olsson AB, Uppsala (Sweden); Outters, Nils [Golder Associates AB, Uppsala (Sweden); Syrjaenen, Pauli [Gridpoint Oy, Helsinki (Sweden)

    2006-04-15

    This report comprises the design step D1 related to the underground design for a deep repository located at the Forsmark site. The design is based on the Site Descriptive Model Forsmark v1.2. All studies have been focussed at an area southeast of the Forsmark nuclear plant, which has been considered to be the most promising area for hosting the repository. SKB has developed guidelines for the design of the repository, which further describes the methodology applied for the studies. From these guidelines the following basic objectives for the design step D1 are summarized: to determine whether the final repository can be accommodated within the studied site; to identify site-specific facility critical issues; to test and evaluate the design methodology; to provide feedback to: the design organisation regarding additional studies that needs to be done; the site investigation and modelling organization regarding further investigations required; and the safety assessment team. The possible locations for a tentative deep repository are analysed in Chapter 3 of the report. The most promising area for the repository (denoted 'priority site') has been defined by SKB to be located southeast of the Forsmark nuclear plant and northwest of the gently dipping deformation zone ZFMNE00A2. Regarding the repository depth, present knowledge acquired from the site investigations indicates that it is possible to locate the repository at all stipulated depths according to SKB, that is between 400 m and 700 m depth. The preliminary assessment made in Chapter 3 clearly demonstrates that the repository can be accommodated within the 'priority site'. The potential to accommodate the repository is essentially the same for both 400 m and 500 m depths. The design of the deposition areas is reported in Chapter 4, which includes the design of layout features for all tunnels and deposition holes, orientation of tunnels, calculation of anticipated loss of deposition holes due

  6. Near-surface hydrogeological model of Laxemar. Open repository - Laxemar 1.2

    Energy Technology Data Exchange (ETDEWEB)

    Bosson, Emma

    2006-07-15

    the repository walls, the influence area is calculated to 9.2 km{sup 2}. The effects are concentrated to the tunnel constructions. The inflows to the tunnel, above 150 m below sea level, are in the same range for all levels of grouting. The inflows vary between 4-6 l/s depending on the applied level of grouting. There is good agreement between MIKE SHE and the DarcyTools model of the open repository. The calculated inflows to the repository in DarcyTools are in the same range as the sum of water leaving the model via MOUSE and over the bottom boundary in MIKE SHE. The agreement is best for the cases where the highest level of grouting is applied to the tunnel walls. The runoff from the water courses in the area decreases because of the repository. The largest decrease is noticed in the catchment area underlain by the largest part of the repository, which also is the same catchment area as where the access tunnel is placed. The runoff from this area is reduced by 60% when the highest level of grouting is applied. No visible effects have been noticed concerning the lake water levels in the area. The only lake in the model area, lake Frisksjoen, is underlain by thick layers of clay. This clay layer seems to prevent a lowering of the water level in the lake. The results are very sensitive to the properties of the QD/bedrock interface. A low permeable layer in the interface between the bedrock and the Quaternary deposits has large consequences for the size of the influence area and the dimension of the lowering of the water table. A low permeable layer with a K-value = 1x10{sup -8} m/s reduces the influence area by almost 70%.

  7. Transforming phylogenetic networks: Moving beyond tree space

    OpenAIRE

    Huber, Katharina T.; Moulton, Vincent; Wu, Taoyang

    2016-01-01

    Phylogenetic networks are a generalization of phylogenetic trees that are used to represent reticulate evolution. Unrooted phylogenetic networks form a special class of such networks, which naturally generalize unrooted phylogenetic trees. In this paper we define two operations on unrooted phylogenetic networks, one of which is a generalization of the well-known nearest-neighbor interchange (NNI) operation on phylogenetic trees. We show that any unrooted phylogenetic network can be transforme...

  8. Safety analysis in subsurface repositories

    International Nuclear Information System (INIS)

    1985-06-01

    The development of mathematical models to represent the repository-geosphere-biosphere system, and the development of a structure for data acquisition, processing, and use to analyse the safety of subsurface repositories, are presented. To study the behavior of radionuclides in geosphere a laboratory to determine the hydrodynamic dispersion coefficient was constructed. (M.C.K.) [pt

  9. How many geologic repositories will be needed

    International Nuclear Information System (INIS)

    Evans, T.J.; Halstead, R.J.

    1987-01-01

    DOE's postponement of site-specific work on the second repository program had rekindled debate over the number of geologic repositories needed for disposal of high level radioactive waste. The multiple repository approach grew out of the March, 1979 IRG report, which recommended co-disposal of civilian and defense HLW in a system of regional repositories. The multiple repository approach was adopted by DOE, and incorporated in the Nuclear Waste Policy Act passed by Congress in December, 1982. Since the late 1970's, the slower than anticipated growth of the nuclear power industry has substantially reduced earlier estimates of the amount of civilian spent fuel which will require geologic disposal. Reactors currently in operation (78.5 GWe) and reactors in the construction pipeline (28 GWe) are expected to discharge about 103,200 MTU of spent fuel by the year 2036, assuming no increase in fuel burnup rate. By the year 2020, defense high level radioactive wastes equivalent to as much as 27,000 MTU could require geologic disposal. Small amounts of high level waste from other sources will also require geologic disposal. Total disposal requirements appear to be less than 140,000 MTU. The five sites nominated for the first repository, as well as hypothetical sites in granite, the host rock under primary consideration for the second repository, all appear capable of accommodating up to 140,000 MTU

  10. Digital Repositories An investigation of best practices for content recruitment to academic digital repositories and the conditions for their livelihood

    CERN Document Server

    Hagen, Reidun Anette

    2009-01-01

    A digital repository is a web accessible database, aimed at preserving the research material of an institution or scientific community. A digital repository serves as a tool for dissemination of research material and can increase the impact of the research by making it freely accessible. Digital repositories are often mentioned as a possible aid in relation to the Open Access debate; how research material should be freely accessible to anyone, anywhere at any time. However, for a digital repository to fully unleash its potential as a crucial component of Open Access, it is reliant on the ability to successfully collect and organize content. To a large extent this involves initiating self-archiving of research material by scientists throughout the academic world. This is not a trivial task, and many current repositories are inadequate in this respect, remaining empty, unvisited shelves. This thesis explores best practices for content recruitment to digital repositories, through the review of literature, and an...

  11. Building Scientific Data's list of recommended data repositories

    Science.gov (United States)

    Hufton, A. L.; Khodiyar, V.; Hrynaszkiewicz, I.

    2016-12-01

    When Scientific Data launched in 2014 we provided our authors with a list of recommended data repositories to help them identify data hosting options that were likely to meet the journal's requirements. This list has grown in size and scope, and is now a central resource for authors across the Nature-titled journals. It has also been used in the development of data deposition policies and recommended repository lists across Springer Nature and at other publishers. Each new addition to the list is assessed according to a series of criteria that emphasize the stability of the resource, its commitment to principles of open science and its implementation of relevant community standards and reporting guidelines. A preference is expressed for repositories that issue digital object identifiers (DOIs) through the DataCite system and that share data under the Creative Commons CC0 waiver. Scientific Data currently lists fourteen repositories that focus on specific areas within the Earth and environmental sciences, as well as the broad scope repositories, Dryad and figshare. Readers can browse and filter datasets published at the journal by the host repository using ISA-explorer, a demo tool built by the ISA-tools team at Oxford University1. We believe that well-maintained lists like this one help publishers build a network of trust with community data repositories and provide an important complement to more comprehensive data repository indices and more formal certification efforts. In parallel, Scientific Data has also improved its policies to better support submissions from authors using institutional and project-specific repositories, without requiring each to apply for listing individually. Online resources Journal homepage: http://www.nature.com/scientificdata Data repository criteria: http://www.nature.com/sdata/policies/data-policies#repo-criteria Recommended data repositories: http://www.nature.com/sdata/policies/repositories Archived copies of the list: https

  12. Radioactive Waste Repositories and Incentives to Local Communities

    International Nuclear Information System (INIS)

    Knapp, A.; Medakovic, S.

    2008-01-01

    Public acceptance of radioactive waste (RW) repository depends on various and often community-specific factors. Although radiological risk from a properly constructed low and intermediate level waste (LILW) repository is practically negligible, routine safety considerations will favor low populated areas and therefore probably underdeveloped communities. Repository acceptance in such communities is more likely to be facilitated by prospective benefits to local economy, such as infrastructure development and increased employment, as well as by dedicated financial incentives to the community. Direct financial compensation to the local community for acceptance of the repository has been considered in some documents in countries experienced in RW management, but it has not become a widely accepted practice. In Croatia, a possibility for such compensation is mentioned in the land use plan in conjunction with the prospective RW repository site. In Slovenia, the government has already specified the annual amount of 2.33 million euro as a compensation for 'limited land use' to be shared by local communities in the vicinity of the planned LILW repository during its operation. Applicability of the Slovenian compensations to the prospective joint Slovenian-Croatian repository is not yet clear, at least in the aspect of joint funding. The joint Slovenian-Croatian Decommissioning and LILW and SF management program for NPP Krsko from 2004 did conservatively include the compensations into the repository cost estimates, but that might not be retained in subsequent revisions of the Program. According to the agreement between governments of Slovenia and Croatia on the Nuclear power plant Krsko, Croatian side has no obligations to participate in 'public expenditures' introduced after the agreement, as would be the case of community compensations for LILW repository in Slovenia. Before further decisions on joint NPP Krsko waste management are made, including the issue of LILW

  13. The Global Registry of Biodiversity Repositories: A Call for Community Curation

    Science.gov (United States)

    Miller, Scott E.; Trizna, Michael G.; Graham, Eileen; Crane, Adele E.

    2016-01-01

    Abstract The Global Registry of Biodiversity Repositories is an online metadata resource for biodiversity collections, the institutions that contain them, and associated staff members. The registry provides contact and address information, characteristics of the institutions and collections using controlled vocabularies and free-text descripitons, links to related websites, unique identifiers for each institution and collection record, text fields for loan and use policies, and a variety of other descriptors. Each institution record includes an institutionCode that must be unique, and each collection record must have a collectionCode that is unique within that institution. The registry is populated with records imported from the largest similar registries and more can be harmonized and added. Doing so will require community input and curation and would produce a truly comprehensive and unifying information resource. PMID:27660523

  14. The Global Registry of Biodiversity Repositories: A Call for Community Curation.

    Science.gov (United States)

    Schindel, David E; Miller, Scott E; Trizna, Michael G; Graham, Eileen; Crane, Adele E

    2016-01-01

    The Global Registry of Biodiversity Repositories is an online metadata resource for biodiversity collections, the institutions that contain them, and associated staff members. The registry provides contact and address information, characteristics of the institutions and collections using controlled vocabularies and free-text descripitons, links to related websites, unique identifiers for each institution and collection record, text fields for loan and use policies, and a variety of other descriptors. Each institution record includes an institutionCode that must be unique, and each collection record must have a collectionCode that is unique within that institution. The registry is populated with records imported from the largest similar registries and more can be harmonized and added. Doing so will require community input and curation and would produce a truly comprehensive and unifying information resource.

  15. Management of radioactive waste at Novi Han Repository

    International Nuclear Information System (INIS)

    Stefanova, I.G.; Mateeva, M.D.; Milanov, M.V.

    2002-01-01

    The Novi Han Repository is the only existing repository in Bulgaria for the disposal of radioactive waste from nuclear applications in industry, medicine and research. The repository was constructed in the early sixties according to the existing requirements. It was operated by the Institute for Nuclear Research and Nuclear Energy for more than thirty years without any accident or release of radioactivity to the environment, but without any investment for upgrading. As a consequence, the Bulgarian Nuclear Safety Authority temporarily stopped the operation of the repository in 1994. The measures for upgrading the Novi Han Repository, supported by the IAEA under TC Project BUL/4/005 'Increasing Safety of Novi Han Repository', are presented in this paper. They comprise: assessment of radionuclide inventory and future waste arisings, characterisation of disposal vaults, characterisation of the site, safety assessment, upgrading of the monitoring system, option study for the selection of treatment and conditioning processes and the development of a conceptual design for low and intermediate level waste processing and storage facility, immediate measures for improvement of the existing disposal vaults and infrastructure, construction of above-ground temporary storage structures, and resuming the operation of the Novi Han Repository. The necessary activities for re-licensing of the Novi Han Repository, construction of a waste processing and storage facility and a disposal facility for spent sealed sources are discussed. (author)

  16. CAED Document Repository

    Data.gov (United States)

    U.S. Environmental Protection Agency — Compliance Assurance and Enforcement Division Document Repository (CAEDDOCRESP) provides internal and external access of Inspection Records, Enforcement Actions, and...

  17. Upgrading of radon's type near surface repository in Latvia

    International Nuclear Information System (INIS)

    Abramenkovs, A.

    2006-01-01

    In 1959, the Soviet government decided to construct the near surface radioactive wastes repository 'Radons' near the Baldone city. It was put in operation in 1962. The changes in the development of the repository were induced by the necessarily to upgrade it for disposal of radioactive wastes from the decommissioning of the Salaspils Research Reactor (SRR). The safety assessment of repository was performed during 2000-2001 under the PHARE project for necessary upgrades of repository. The outline design for new vaults and interim storage for long lived radioactive wastes was elaborated during 2003-2004 years. The Environmental Impact Assessment (EIA) for upgrade of Baldone repository was performed during 2004-2005 years. It was found, that additional efforts must be devoted for solution of social aspects o for successful operation and upgrade of repository. It was shown by EIA, that the local population has a negative opinion against the upgrade of repository in Latvia. The main recommendations for upgrades were connected with increasing the safety of repository, increasing of PR activities for education of society and developing of compensation mechanism for local municipality. (author)

  18. Selection of Corrosion Resistant Materials for Nuclear Waste Repositories

    International Nuclear Information System (INIS)

    R.B. Rebak

    2006-01-01

    Several countries are considering geological repositories to dispose of nuclear waste. The environment of most of the currently considered repositories will be reducing in nature, except for the repository in the US, which is going to be oxidizing. For the reducing repositories, alloys such as carbon steel, stainless steels and titanium are being evaluated. For the repository in the US, some of the most corrosion resistant commercially available alloys are being investigated. This paper presents a summary of the behavior of the different materials under consideration for the repositories and the current understanding of the degradation modes of the proposed alloys in ground water environments from the point of view of general corrosion, localized corrosion and environmentally assisted cracking

  19. Numerical modeling of magma-repository interactions

    NARCIS (Netherlands)

    Bokhove, Onno

    2001-01-01

    This report explains the numerical programs behind a comprehensive modeling effort of magma-repository interactions. Magma-repository interactions occur when a magma dike with high-volatile content magma ascends through surrounding rock and encounters a tunnel or drift filled with either a magmatic

  20. Multinational/regional repository - an illusion or solution

    International Nuclear Information System (INIS)

    Mele, I.

    2006-01-01

    The concept and current status of multinational and regional repositories are presented in the paper. Particular emphasis is given to the results and findings of the recent EU project SAPIERR, investigating the feasibility of regional repository concepts in Europe. Prospects for further development of multinational repositories are also brought forward and the impact and potential benefits of this approach to our national disposal programme are discussed as well. (author)

  1. Repository performance confirmation

    International Nuclear Information System (INIS)

    Hansen, Francis D.

    2011-01-01

    Repository performance confirmation links the technical bases of repository science and societal acceptance. This paper explores the myriad aspects of what has been labeled performance confirmation in U.S. programs, which involves monitoring as a collection of distinct activities combining technical and social significance in radioactive waste management. This paper is divided into four parts: (1) A distinction is drawn between performance confirmation monitoring and other testing and monitoring objectives; (2) A case study illustrates confirmation activities integrated within a long-term testing and monitoring strategy for Yucca Mountain; (3) A case study reviews compliance monitoring developed and implemented for the Waste Isolation Pilot Plant; and (4) An approach for developing, evaluating and implementing the next generation of performance confirmation monitoring is presented. International interest in repository monitoring is exhibited by the European Commission Seventh Framework Programme 'Monitoring Developments for Safe Repository Operation and Staged Closure' (MoDeRn) Project. The MoDeRn partners are considering the role of monitoring in a phased approach to the geological disposal of radioactive waste. As repository plans advance in different countries, the need to consider monitoring strategies within a controlled framework has become more apparent. The MoDeRn project pulls together technical and societal experts to assimilate a common understanding of a process that could be followed to develop a monitoring program. A fundamental consideration is the differentiation of confirmation monitoring from the many other testing and monitoring activities. Recently, the license application for Yucca Mountain provided a case study including a technical process for meeting regulatory requirements to confirm repository performance as well as considerations related to the preservation of retrievability. The performance confirmation plan developed as part of the

  2. On Nakhleh's metric for reduced phylogenetic networks

    OpenAIRE

    Cardona, Gabriel; Llabrés, Mercè; Rosselló, Francesc; Valiente Feruglio, Gabriel Alejandro

    2009-01-01

    We prove that Nakhleh’s metric for reduced phylogenetic networks is also a metric on the classes of tree-child phylogenetic networks, semibinary tree-sibling time consistent phylogenetic networks, and multilabeled phylogenetic trees. We also prove that it separates distinguishable phylogenetic networks. In this way, it becomes the strongest dissimilarity measure for phylogenetic networks available so far. Furthermore, we propose a generalization of that metric that separates arbitrary phyl...

  3. Phylogenetic Analysis Using Protein Mass Spectrometry.

    Science.gov (United States)

    Ma, Shiyong; Downard, Kevin M; Wong, Jason W H

    2017-01-01

    Through advances in molecular biology, comparative analysis of DNA sequences is currently the cornerstone in the study of molecular evolution and phylogenetics. Nevertheless, protein mass spectrometry offers some unique opportunities to enable phylogenetic analyses in organisms where DNA may be difficult or costly to obtain. To date, the methods of phylogenetic analysis using protein mass spectrometry can be classified into three categories: (1) de novo protein sequencing followed by classical phylogenetic reconstruction, (2) direct phylogenetic reconstruction using proteolytic peptide mass maps, and (3) mapping of mass spectral data onto classical phylogenetic trees. In this chapter, we provide a brief description of the three methods and the protocol for each method along with relevant tools and algorithms.

  4. The Lincoln Repository presentation: ten reasons why you should put a copy of your work in the Repository

    OpenAIRE

    Stainthorp, Paul

    2010-01-01

    Slideshow presentation created to promote the Lincoln Repository to staff at the University of Lincoln. Consists of ten reasons why academic authors should consider depositing copies of their work in the Repository.

  5. International perspective on repositories for low level waste

    International Nuclear Information System (INIS)

    Bergstroem, Ulla; Pers, Karin; Almen, Ylva

    2011-12-01

    Nuclear energy production gives rise to different types of radioactive waste. The use of nuclear isotopes within the research, industry and medical sectors also generates radioactive waste. To protect man and the environment from radiation the waste is isolated and contained by deposition in repositories. These repositories may have various designs regarding location, barriers etc depending on the potential danger of the waste. In Sweden, low- and intermediate level waste (LILW) is disposed of in the SFR repository in Forsmark. The repository is located 60 metres down into the bedrock under the bottom of the sea and covered by 6 metres of water. It is planned to extend SFR to accommodate decommissioning waste from the dismantling of the Swedish nuclear power facilities and also for the additional operation waste caused by the planned prolonged operation time. When planning the extension consultations will be carried out with the host municipality, authorities, organisations and general public. In planning the extension, SKB has performed a worldwide compilation of how other countries have, or plan to, handle the final disposal of similar wastes. The aim of this report is to give a brief description of LILW repositories worldwide; including general brief descriptions of many facilities, descriptions of the waste and the barriers as well as safety assessments for a few chosen repositories which represent different designs. The latter is performed, where possible, to compare certain features against the Swedish SFR. To provide a background and context to this study, international organisations and conventions are also presented along with internationally accepted principles regarding the management of radioactive waste. Similar to SFR, suitable locations for the repositories have, in many countries, been found at sites that already have, or used to have nuclear activities, such as reactor sites. Abandoned and disused mines, such as the salt mines in Germany, also

  6. International perspective on repositories for low level waste

    Energy Technology Data Exchange (ETDEWEB)

    Bergstroem, Ulla; Pers, Karin; Almen, Ylva (SKB International AB (Sweden))

    2011-12-15

    Nuclear energy production gives rise to different types of radioactive waste. The use of nuclear isotopes within the research, industry and medical sectors also generates radioactive waste. To protect man and the environment from radiation the waste is isolated and contained by deposition in repositories. These repositories may have various designs regarding location, barriers etc depending on the potential danger of the waste. In Sweden, low- and intermediate level waste (LILW) is disposed of in the SFR repository in Forsmark. The repository is located 60 metres down into the bedrock under the bottom of the sea and covered by 6 metres of water. It is planned to extend SFR to accommodate decommissioning waste from the dismantling of the Swedish nuclear power facilities and also for the additional operation waste caused by the planned prolonged operation time. When planning the extension consultations will be carried out with the host municipality, authorities, organisations and general public. In planning the extension, SKB has performed a worldwide compilation of how other countries have, or plan to, handle the final disposal of similar wastes. The aim of this report is to give a brief description of LILW repositories worldwide; including general brief descriptions of many facilities, descriptions of the waste and the barriers as well as safety assessments for a few chosen repositories which represent different designs. The latter is performed, where possible, to compare certain features against the Swedish SFR. To provide a background and context to this study, international organisations and conventions are also presented along with internationally accepted principles regarding the management of radioactive waste. Similar to SFR, suitable locations for the repositories have, in many countries, been found at sites that already have, or used to have nuclear activities, such as reactor sites. Abandoned and disused mines, such as the salt mines in Germany, also

  7. Data repositories for medical education research: issues and recommendations.

    Science.gov (United States)

    Schwartz, Alan; Pappas, Cleo; Sandlow, Leslie J

    2010-05-01

    The authors explore issues surrounding digital repositories with the twofold intention of clarifying their creation, structure, content, and use, and considering the implementation of a global digital repository for medical education research data sets-an online site where medical education researchers would be encouraged to deposit their data in order to facilitate the reuse and reanalysis of the data by other researchers. By motivating data sharing and reuse, investigators, medical schools, and other stakeholders might see substantial benefits to their own endeavors and to the progress of the field of medical education.The authors review digital repositories in medicine, social sciences, and education, describe the contents and scope of repositories, and present extant examples. The authors describe the potential benefits of a medical education data repository and report results of a survey of the Society for Directors of Research in Medicine Education, in which participants responded to questions about data sharing and a potential data repository. Respondents strongly endorsed data sharing, with the caveat that principal investigators should choose whether or not to share data they collect. A large majority believed that a repository would benefit their unit and the field of medical education. Few reported using existing repositories. Finally, the authors consider challenges to the establishment of such a repository, including taxonomic organization, intellectual property concerns, human subjects protection, technological infrastructure, and evaluation standards. The authors conclude with recommendations for how a medical education data repository could be successfully developed.

  8. Implementation of the Brazilian national repository

    International Nuclear Information System (INIS)

    Tello, Cledola Cassia Oliveira de

    2013-01-01

    Ionizing radiation in Brazil is used in electricity generation, medicine, industry, agriculture and for research and development purposes. All these activities can generate radioactive waste. At this point, in Brazil, the use of nuclear energy and radioisotopes justifies the construction of a national repository for radioactive wastes of low and intermediate-level. According to Federal Law No. 10308, Brazilian National Commission for Nuclear Energy (CNEN) is responsible for designing and constructing the intermediate and final storages for radioactive wastes. Additionally, a restriction on the construction of Angra 3 is that the repository is under construction until its operation start, attaining some requirements of the Brazilian Environmental Regulator (IBAMA). The RBMN Project (Repository for Low and Intermediate-Level Radioactive Wastes) aims at the implantation of a National Repository for disposal of low and intermediate-level of radiation wastes. This Project has some aspects that are unique in the Brazilian context, especially referring to the time between its construction and the end of its institutional period. This time is about 360 years, when the area will be released for unrestricted uses. It means that the Repository must be safe and secure for more than three hundred years, which is longer than half of the whole of Brazilian history. This aspect is very new for the Brazilian people, bringing a new dimension to public acceptance. Another point is this will be the first repository in South America, bringing a real challenge for the continent. The current status of the Project is summarized. (author)

  9. The development of safeguards for geological repositories

    International Nuclear Information System (INIS)

    Van der Meer, K.

    2009-01-01

    Traditionally, research and development on geological repositories for High Level Waste (HLW) focuses on the short- and long-term safety aspects of the repository. If the repository will also be used for the disposal of spent fuel, safeguards aspects have to be taken into account. Safety and safeguards requirements may be contradictory; the safety of a geological repository is based on the non-intrusion of the geological containment, while safeguards require regular inspections of position and amount of the spent fuel. Examples to reconcile these contradictory requirements are the use of information required for the safety assessment of the geological repository for safeguards purposes and the adaptation of the safeguards approach to use non-intrusive inspection techniques. The principles of an inspection approach for a geological repository are now generally accepted within the IAEA. The practical applicability of the envisaged inspection techniques is still subject to investigation. It is specifically important for the Belgian situation that an inspection technique can be used in clay, the geological medium in which Belgium intends to dispose its HLW and spent fuel. The work reported in this chapter is the result of an international cooperation in the framework of the IAEA, in which SCK-CEN participates

  10. Investigative study of standards for digital repositories and related services

    CERN Document Server

    Foulonneau, Muriel; Badolato, Anne-Marie

    2008-01-01

    This study is meant for institutional repository managers, service providers, repository software developers and generally, all players taking an active part in the creation of the digital repository infrastructure for e-research and e-learning. It reviews the current standards, protocols and applications in the domain of digital repositories. Special attention is being paid to the interoperability of repositories to enhance the exchange of data in repositories. It aims to stimulate discussion about these topics and supports initiatives for the integration of and, where needed, development of

  11. Refinancing of the search for a repository and of the repository for heat generating radioactive Waste. Pt. 2

    International Nuclear Information System (INIS)

    Moench, Christoph

    2013-01-01

    Part I of this article, which appeared in the preceding issue, described in general terms the background to the search for a disposal site and the result of the exploration to date of the repository, which would appear to be suitable from a mining standpoint according to the present knowledge. According to the rules in effect up to now, the exploration and construction would be financed by advance payments on the contributions of the waste producing companies, in particular the utility companies. The working draft of an 'Act on the search for and selection of a site for a repository for heat generating radioactive waste' (Gesetz zur Suche und Auswahl eines Standortes fuer ein Endlager fuer waermeentwickelnde radioaktive Abfaelle) from autumn 2012 provides for a new version of section 21b Atomic Energy Act, under which the costs for 'carrying out a repository selection procedure pursuant to the Repository Selection Act (Standort-auswahlgesetz)' would be allocated to the future users of the repository who are obliged to make contributions as a 'necessary expense'. Part II evaluates this provision of the working draft on the basis of the financial constitutional law. A comparison of sites is not a measure that could be allocated to the future users of the repository who are obliged to make contributions as a 'necessary expense'. Moreover, there is a lack of responsibility for the financing and of a legally relevant advantage that would be conferred by a cumulative alternative repository search for the later users of the repository who are obliged to provide the pre-financing. The costs can therefore not be allocated to the later users as either a contribution or a special charge, not even by way of an association with mandatory membership (Zwangsverband). They must be borne by the state. Consequently, the allocation stipulated by provision would constitute an impermissible charge under financial constitutional law. (orig.)

  12. Transforming phylogenetic networks: Moving beyond tree space.

    Science.gov (United States)

    Huber, Katharina T; Moulton, Vincent; Wu, Taoyang

    2016-09-07

    Phylogenetic networks are a generalization of phylogenetic trees that are used to represent reticulate evolution. Unrooted phylogenetic networks form a special class of such networks, which naturally generalize unrooted phylogenetic trees. In this paper we define two operations on unrooted phylogenetic networks, one of which is a generalization of the well-known nearest-neighbor interchange (NNI) operation on phylogenetic trees. We show that any unrooted phylogenetic network can be transformed into any other such network using only these operations. This generalizes the well-known fact that any phylogenetic tree can be transformed into any other such tree using only NNI operations. It also allows us to define a generalization of tree space and to define some new metrics on unrooted phylogenetic networks. To prove our main results, we employ some fascinating new connections between phylogenetic networks and cubic graphs that we have recently discovered. Our results should be useful in developing new strategies to search for optimal phylogenetic networks, a topic that has recently generated some interest in the literature, as well as for providing new ways to compare networks. Copyright © 2016 Elsevier Ltd. All rights reserved.

  13. Institutional Repositories as Infrastructures for Long-Term Preservation

    Science.gov (United States)

    Francke, Helena; Gamalielsson, Jonas; Lundell, Björn

    2017-01-01

    Introduction: The study describes the conditions for long-term preservation of the content of the institutional repositories of Swedish higher education institutions based on an investigation of how deposited files are managed with regards to file format and how representatives of the repositories describe the functions of the repositories.…

  14. Site selection for deep geologic repositories - Consequences for society, economy and environment; was kommt auf die regionen zu? Auswirkungen geologischer tiefenlager auf gesellschaft, wirtschaft und lebensraum

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2010-03-15

    In a few years, Switzerland will make the decision regarding site selection for geological underground repositories for the storage of radioactive wastes. Besides the safety issue, many citizens are interested in how such a repository will affect environment, economy and society in the selected site's region. This brochure summarizes the results of many studies on the socio-economic impacts of nuclear waste repositories. Radioactive wastes must be stored in such a way that mankind and environment are safely protected for a long period of time. How this goal may be achieved, is already known: geologic deep repositories warrant long-term safety. For the oncoming years in Switzerland the question is where the repository will be built. The search for an appropriate site for a repository in the proposed regions will launch discussions. Within the participative framework the regions may bring their requests. The demonstration of the safety of potential repository sites has the highest priority in the selection process. In the third procedural step additional rock investigations will be made. The socio-economic studies and the experience with existing plants show that radioactive waste management plants can be built and operated in good agreement with environmental requirements. The radioactive wastes in a deep underground repository are stored many hundred meters below the Earth's surface. There, they are isolated from our vital space. Technical barriers and the surrounding dense rock confinement prevent the release of radioactive materials into the environment. A deep repository has positive consequences for the regional economy. It increases trade and value creation and creates work places. The socio-economic impacts practically extend over one century, but strongly vary with time; they are the largest during the building period. High life quality and a positive population development in the selected site region are compatible with a deep repository. A fair

  15. Repository for spent nuclear fuel. Plant description layout D - Forsmark

    International Nuclear Information System (INIS)

    2010-07-01

    This document describes the final repository for spent nuclear fuel, SFK, which is located at Forsmark, in Oesthammar. The bedrock at the site is part of a so-called tectonic lens, in which the rock composition is relatively homogeneous and less deformed than outside the lens. The bedrock consists mainly of granite with high quartz content and good thermal conductivity. The central parts above ground are grouped in an operations area, located at the Soederviken on the south side of the intake duct for cooling water for nuclear power plant. Operating area is divided into an internal, secured portion, where the canisters of fuel are handled and there are links to the underground part, and a outer part, where the buffer, backfill and sealing used in the repository's barriers are produced. The above-ground part of the plant and also include storage of excavated rock, ventilation stations, and supplies of bentonite. The underground portion consists of a central area and a storage area. Caverns of the central area contain features for the underground operation. It communicates with the internal operating range above ground via a spiral ramp and several shafts. The ramp used to transport capsules of spent fuel and other heavy or bulky transport. The shafts are used to transport rock, buffer, backfill and staff, as well as for ventilation. The largest part of the space below ground is the repository where the canisters with the spent fuel are disposed. The capsules are deposited in vertical holes in the tunnels. When the deposit in a tunnel is complete, the tunnel is re-filled. The two main activities underground is rock work and disposal work, which are conducted separately from each other. Rock works covers all steps required to excavate tunnels and drill deposition holes, as well as to make temporary installations in the tunnels. To the landfill works count, besides the deposit of the capsule, the placement of the bentonite buffer in the deposition hole and backfilling

  16. Socioeconomic impacts of repositories

    International Nuclear Information System (INIS)

    Thomas, J.K.; Hamm, R.R.; Murdock, S.H.

    1983-01-01

    Federal and state decision makers, community leaders, and residents must know how communities will be changed by the impacts of a high-level nuclear waste repository. This chapter identifies the factors affecting an assessment of socioeconomic impacts and the types of impacts (economic, demographic, fiscal, community service, and social) likely to occur as a result of repository development. Each of these types can be divided into standard (those which typically results from any large-scale development) and special impact categories (those which result from the fact that radioactive materials will be handled). 3 tables

  17. Functional and phylogenetic ecology in R

    CERN Document Server

    Swenson, Nathan G

    2014-01-01

    Functional and Phylogenetic Ecology in R is designed to teach readers to use R for phylogenetic and functional trait analyses. Over the past decade, a dizzying array of tools and methods were generated to incorporate phylogenetic and functional information into traditional ecological analyses. Increasingly these tools are implemented in R, thus greatly expanding their impact. Researchers getting started in R can use this volume as a step-by-step entryway into phylogenetic and functional analyses for ecology in R. More advanced users will be able to use this volume as a quick reference to understand particular analyses. The volume begins with an introduction to the R environment and handling relevant data in R. Chapters then cover phylogenetic and functional metrics of biodiversity; null modeling and randomizations for phylogenetic and functional trait analyses; integrating phylogenetic and functional trait information; and interfacing the R environment with a popular C-based program. This book presents a uni...

  18. Electronic Repository of Russian Historical Statistics

    NARCIS (Netherlands)

    Tykhonov, Vyacheslav; Kessler, Gijs; Markevich, Andrei; de Vries, Jerry

    2014-01-01

    The Electronic Repository for Russian Historical Statistics brings together data extracted from various published and unpublished sources in one place. Its principal focus is Russian economic and social history of the last three centuries (18th-21st). The repository caters to the needs of the

  19. A format for phylogenetic placements.

    Directory of Open Access Journals (Sweden)

    Frederick A Matsen

    Full Text Available We have developed a unified format for phylogenetic placements, that is, mappings of environmental sequence data (e.g., short reads into a phylogenetic tree. We are motivated to do so by the growing number of tools for computing and post-processing phylogenetic placements, and the lack of an established standard for storing them. The format is lightweight, versatile, extensible, and is based on the JSON format, which can be parsed by most modern programming languages. Our format is already implemented in several tools for computing and post-processing parsimony- and likelihood-based phylogenetic placements and has worked well in practice. We believe that establishing a standard format for analyzing read placements at this early stage will lead to a more efficient development of powerful and portable post-analysis tools for the growing applications of phylogenetic placement.

  20. Whole genome sequence phylogenetic analysis of four Mexican rabies viruses isolated from cattle.

    Science.gov (United States)

    Bárcenas-Reyes, I; Loza-Rubio, E; Cantó-Alarcón, G J; Luna-Cozar, J; Enríquez-Vázquez, A; Barrón-Rodríguez, R J; Milián-Suazo, F

    2017-08-01

    Phylogenetic analysis of the rabies virus in molecular epidemiology has been traditionally performed on partial sequences of the genome, such as the N, G, and P genes; however, that approach raises concerns about the discriminatory power compared to whole genome sequencing. In this study we characterized four strains of the rabies virus isolated from cattle in Querétaro, Mexico by comparing the whole genome sequence to that of strains from the American, European and Asian continents. Four cattle brain samples positive to rabies and characterized as AgV11, genotype 1, were used in the study. A cDNA sequence was generated by reverse transcription PCR (RT-PCR) using oligo dT. cDNA samples were sequenced in an Illumina NextSeq 500 platform. The phylogenetic analysis was performed with MEGA 6.0. Minimum evolution phylogenetic trees were constructed with the Neighbor-Joining method and bootstrapped with 1000 replicates. Three large and seven small clusters were formed with the 26 sequences used. The largest cluster grouped strains from different species in South America: Brazil, and the French Guyana. The second cluster grouped five strains from Mexico. A Mexican strain reported in a different study was highly related to our four strains, suggesting common source of infection. The phylogenetic analysis shows that the type of host is different for the different regions in the American Continent; rabies is more related to bats. It was concluded that the rabies virus in central Mexico is genetically stable and that it is transmitted by the vampire bat Desmodus rotundus. Copyright © 2017 Elsevier Ltd. All rights reserved.

  1. Phylogenetic relationships and evolution of growth form in Cactaceae (Caryophyllales, Eudicotyledoneae).

    Science.gov (United States)

    Hernández-Hernández, Tania; Hernández, Héctor M; De-Nova, J Arturo; Puente, Raul; Eguiarte, Luis E; Magallón, Susana

    2011-01-01

    Cactaceae is one of the most charismatic plant families because of the extreme succulence and outstanding diversity of growth forms of its members. Although cacti are conspicuous elements of arid ecosystems in the New World and are model systems for ecological and anatomical studies, the high morphological convergence and scarcity of phenotypic synapomorphies make the evolutionary relationships and trends among lineages difficult to understand. We performed phylogenetic analyses implementing parsimony ratchet and likelihood methods, using a concatenated matrix with 6148 bp of plastid and nuclear markers (trnK/matK, matK, trnL-trnF, rpl16, and ppc). We included 224 species representing approximately 85% of the family's genera. Likelihood methods were used to perform an ancestral character reconstruction within Cactoideae, the richest subfamily in terms of morphological diversity and species number, to evaluate possible growth form evolutionary trends. Our phylogenetic results support previous studies showing the paraphyly of subfamily Pereskioideae and the monophyly of subfamilies Opuntioideae and Cactoideae. After the early divergence of Blossfeldia, Cactoideae splits into two clades: Cacteae, including North American globose and barrel-shaped members, and core Cactoideae, including the largest diversity of growth forms distributed throughout the American continent. Para- or polyphyly is persistent in different parts of the phylogeny. Main Cactoideae clades were found to have different ancestral growth forms, and convergence toward globose, arborescent, or columnar forms occurred in different lineages. Our study enabled us to provide a detailed hypothesis of relationships among cacti lineages and represents the most complete general phylogenetic framework available to understand evolutionary trends within Cactaceae.

  2. ARA-PEPs: a repository of putative sORF-encoded peptides in Arabidopsis thaliana.

    Science.gov (United States)

    Hazarika, Rashmi R; De Coninck, Barbara; Yamamoto, Lidia R; Martin, Laura R; Cammue, Bruno P A; van Noort, Vera

    2017-01-17

    Many eukaryotic RNAs have been considered non-coding as they only contain short open reading frames (sORFs). However, there is increasing evidence for the translation of these sORFs into bioactive peptides with potent signaling, antimicrobial, developmental, antioxidant roles etc. Yet only a few peptides encoded by sORFs are annotated in the model organism Arabidopsis thaliana. To aid the functional annotation of these peptides, we have developed ARA-PEPs (available at http://www.biw.kuleuven.be/CSB/ARA-PEPs ), a repository of putative peptides encoded by sORFs in the A. thaliana genome starting from in-house Tiling arrays, RNA-seq data and other publicly available datasets. ARA-PEPs currently lists 13,748 sORF-encoded peptides with transcriptional evidence. In addition to existing data, we have identified 100 novel transcriptionally active regions (TARs) that might encode 341 novel stress-induced peptides (SIPs). To aid in identification of bioactivity, we add functional annotation and sequence conservation to predicted peptides. To our knowledge, this is the largest repository of plant peptides encoded by sORFs with transcript evidence, publicly available and this resource will help scientists to effortlessly navigate the list of experimentally studied peptides, the experimental and computational evidence supporting the activity of these peptides and gain new perspectives for peptide discovery.

  3. Fons antic i repositoris universitaris a Espanya

    Directory of Open Access Journals (Sweden)

    Herrera Morillas, José Luis

    2015-12-01

    Full Text Available Es mostra la presència de col·leccions de fons antic en els repositoris de les biblioteques universitàries espanyoles després d'analitzar tots els repositoris. Per a aquesta anàlisi, com a part de la metodologia emprada, s'ha elaborat un model o llista que consta d'onze elements. Del conjunt de les universitats espanyoles, seixanta tenen repositoris, vint-i-vuit dels quals (16,8 % disposen de col·leccions de fons antic. Com que del concepte de repositori institucional no sembla desprendre's que tingui com a finalitat incloure aquest tipus de col·leccions, es reflexiona sobre la peculiaritat que una part dels repositoris universitaris espanyols inclogui col·leccions d'aquestes característiques.Se muestra la presencia de colecciones de fondo antiguo en los repositorios de las bibliotecas universitarias españolas después de analizar todos los repositorios. Para este análisis, como parte de la metodología empleada, se ha elaborado un modelo o lista que consta de once elementos. Del conjunto de las universidades españolas, sesenta cuentan con repositorios y, de estos, veintiocho (16,8 % disponen de colecciones de fondo antiguo. Debido a que del concepto de repositorio institucional no parece desprenderse que tenga como finalidad albergar este tipo de colecciones, se hace una reflexión sobre la peculiaridad de que parte de los repositorios universitarios españoles incluya colecciones de estas características.This paper uses an analysis of the repositories of Spanish universities to identify which institutions contain rare book and manuscript collections. The method used in this analysis involved examining each university on the basis of a list comprising eleven elements. A total of 60 universities were found to have repositories but only 28 (16.8 % of these contained rare book and manuscript collections. In the light of these figures, which suggest that Spanish university repositories do not generally consider the preservation of rare

  4. Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms.

    Science.gov (United States)

    Speiser, Daniel I; Pankey, M Sabrina; Zaharoff, Alexander K; Battelle, Barbara A; Bracken-Grissom, Heather D; Breinholt, Jesse W; Bybee, Seth M; Cronin, Thomas W; Garm, Anders; Lindgren, Annie R; Patel, Nipam H; Porter, Megan L; Protas, Meredith E; Rivera, Ajna S; Serb, Jeanne M; Zigler, Kirk S; Crandall, Keith A; Oakley, Todd H

    2014-11-19

    Tools for high throughput sequencing and de novo assembly make the analysis of transcriptomes (i.e. the suite of genes expressed in a tissue) feasible for almost any organism. Yet a challenge for biologists is that it can be difficult to assign identities to gene sequences, especially from non-model organisms. Phylogenetic analyses are one useful method for assigning identities to these sequences, but such methods tend to be time-consuming because of the need to re-calculate trees for every gene of interest and each time a new data set is analyzed. In response, we employed existing tools for phylogenetic analysis to produce a computationally efficient, tree-based approach for annotating transcriptomes or new genomes that we term Phylogenetically-Informed Annotation (PIA), which places uncharacterized genes into pre-calculated phylogenies of gene families. We generated maximum likelihood trees for 109 genes from a Light Interaction Toolkit (LIT), a collection of genes that underlie the function or development of light-interacting structures in metazoans. To do so, we searched protein sequences predicted from 29 fully-sequenced genomes and built trees using tools for phylogenetic analysis in the Osiris package of Galaxy (an open-source workflow management system). Next, to rapidly annotate transcriptomes from organisms that lack sequenced genomes, we repurposed a maximum likelihood-based Evolutionary Placement Algorithm (implemented in RAxML) to place sequences of potential LIT genes on to our pre-calculated gene trees. Finally, we implemented PIA in Galaxy and used it to search for LIT genes in 28 newly-sequenced transcriptomes from the light-interacting tissues of a range of cephalopod mollusks, arthropods, and cubozoan cnidarians. Our new trees for LIT genes are available on the Bitbucket public repository ( http://bitbucket.org/osiris_phylogenetics/pia/ ) and we demonstrate PIA on a publicly-accessible web server ( http://galaxy-dev.cnsi.ucsb.edu/pia/ ). Our new

  5. Decompression of magma into repository tunnels

    NARCIS (Netherlands)

    Bokhove, Onno; Woods, A.W.

    2002-01-01

    It is nontrivial to find and design safe repository sites for nuclear waste. It appears common sense to drill tunnels as repository sites in a mountain in remote and relatively dry regions. However, erosion of the waste canisters by naturally abundant chemicals in the mountains water cycle remains a

  6. Phylogenetic inertia and Darwin's higher law.

    Science.gov (United States)

    Shanahan, Timothy

    2011-03-01

    The concept of 'phylogenetic inertia' is routinely deployed in evolutionary biology as an alternative to natural selection for explaining the persistence of characteristics that appear sub-optimal from an adaptationist perspective. However, in many of these contexts the precise meaning of 'phylogenetic inertia' and its relationship to selection are far from clear. After tracing the history of the concept of 'inertia' in evolutionary biology, I argue that treating phylogenetic inertia and natural selection as alternative explanations is mistaken because phylogenetic inertia is, from a Darwinian point of view, simply an expected effect of selection. Although Darwin did not discuss 'phylogenetic inertia,' he did assert the explanatory priority of selection over descent. An analysis of 'phylogenetic inertia' provides a perspective from which to assess Darwin's view. Copyright © 2010 Elsevier Ltd. All rights reserved.

  7. Paper and digital repositories in the United States

    Directory of Open Access Journals (Sweden)

    David F. Kohl

    2003-09-01

    Full Text Available What you've asked me to talk about today is basically what can libraries do with all the stuff they have and continue to get. Where do we put it all; what do we do with it? As we know, libraries have three core functions: collecting, organizing and preserving the key documents of the human enterprise. And, with apologies to Saint Paul, the greatest of these is preservation. For without preservation neither of the first two ultimately matter. My assignment this morning is to bring you up to date on one specific aspect of the preservation function, library repositories, and indeed, library repository developments in the US. The plan for this morning's presentation is the following: after a brief background review to give us a context for American developments we will examine first the various kinds of print repositories and then the various initiatives for electronic repositories. Because other presentations at this conference deal with electronic repositories, the main focus today will be on U.S. print repositories.

  8. Institutional Repository Sebagai Sarana Komunikasi Ilmiah Yang Sustainable Dan Reliable

    Directory of Open Access Journals (Sweden)

    Faizuddin Harliansyah

    2016-07-01

    Full Text Available Abstract; Institutional repositories development has drawn the attention of many scholars throughout the world. Using the keywords ‘institutional repositories’, there are over 300 peer-reviewed articles related on the topic has been indexed in Library, Information Science, & Technology Abstracts (LISTA and SCOPUS. There are also hundreds of theses, dissertations, and websites dedicated on this blooming trends. These are proofs that the importance of IR in higher education has been acknowledged by many professionals in the field. This paper aims at clarifying the role of repositories in strengthening scholarly communication in higher education and research institution and explaining some basic repositories concepts (types of repositories and their characteristics, as well as exploring its relations with open access movement, the development ideas, and resources that could be kept in repositories and deposit policies. Abstrak; Pengembangan institutional repositories telah banyak menyita perhatian dari kalangan ilmiah di seluruh dunia. Melalui kata kunci ‘institutional repositories’, ada lebih dari 300 artikel terulas mitra bestari yang berhubungan dengan topik ini, yang telah terindeks di Library, Information Science, & Technology Abstracts (LISTA, dan SCOPUS. Terdapat juga ratusan tesis, disertasi, dan website yang mengulas trend ini. Inilah bukti bahwa pentingnya institutional repositories (IR telah dipahami oleh para profesional di bidangnya. Tulisan ini akan menjelaskan aturan-aturan repository dalam memperkuat komunikasi ilmiah di perguruan tinggi dan lembaga riset, menjelaskan konsep-konsep dasar repositories, termasuk tipe-tipe repository dan karakteristiknya. Tulisan ini juga akan memperdalam konsep repositories dalam hubungannya dengan gerakan open access, pengembangan ide-ide, sumber-sumber ilmiah yang dapat disimpan di repositories, serta kebijakan penyimpanan di dalamnya.

  9. Environmental issues of repository licensing: an evaluation of a hypothetical high-level radioactive waste repository

    International Nuclear Information System (INIS)

    Owen, J.L.; McGinnis, J.T.; Harper, C.M.; Battelle Columbus Labs., OH)

    1982-01-01

    This paper presents results of an environmental assessment conducted under the direction of the Office of Nuclear Waste Isolation as part of the National Waste Terminal Storage program. The study defined a range of potential environmental effects of constructing, operating, decommissioning, and long-term isolation of a nuclear waste repository. The analytical methodology used to determine potential environmental effects required definition of a hypothetical environmental setting and repository. Potentially applicable regulatory requirements were identified and were used as guidelines to evaluate permitting feasibility. The environmental effects of repository development were analyzed for the two major time periods of concern: short term (the period of construction, operation, and decommissioning) and long term (the isolation period after decommissioning). As a result of this analysis, major environmental uncertainties and issues were identified. 11 references, 5 figures

  10. Phylogenetic analysis of fungal ABC transporters.

    Science.gov (United States)

    Kovalchuk, Andriy; Driessen, Arnold J M

    2010-03-16

    The superfamily of ABC proteins is among the largest known in nature. Its members are mainly, but not exclusively, involved in the transport of a broad range of substrates across biological membranes. Many contribute to multidrug resistance in microbial pathogens and cancer cells. The diversity of ABC proteins in fungi is comparable with those in multicellular animals, but so far fungal ABC proteins have barely been studied. We performed a phylogenetic analysis of the ABC proteins extracted from the genomes of 27 fungal species from 18 orders representing 5 fungal phyla thereby covering the most important groups. Our analysis demonstrated that some of the subfamilies of ABC proteins remained highly conserved in fungi, while others have undergone a remarkable group-specific diversification. Members of the various fungal phyla also differed significantly in the number of ABC proteins found in their genomes, which is especially reduced in the yeast S. cerevisiae and S. pombe. Data obtained during our analysis should contribute to a better understanding of the diversity of the fungal ABC proteins and provide important clues about their possible biological functions.

  11. Analysis of computational vulnerabilities in digital repositories

    Directory of Open Access Journals (Sweden)

    Valdete Fernandes Belarmino

    2015-04-01

    Full Text Available Objective. Demonstrates the results of research that aimed to analyze the computational vulnerabilities of digital directories in public Universities. Argues the relevance of information in contemporary societies like an invaluable resource, emphasizing scientific information as an essential element to constitute scientific progress. Characterizes the emergence of Digital Repositories and highlights its use in academic environment to preserve, promote, disseminate and encourage the scientific production. Describes the main software for the construction of digital repositories. Method. The investigation identified and analyzed the vulnerabilities that are exposed the digital repositories using Penetration Testing running. Discriminating the levels of risk and the types of vulnerabilities. Results. From a sample of 30 repositories, we could examine 20, identified that: 5% of the repositories have critical vulnerabilities, 85% high, 25% medium and 100% lowers. Conclusions. Which demonstrates the necessity to adapt actions for these environments that promote informational security to minimizing the incidence of external and / or internal systems attacks.Abstract Grey Text – use bold for subheadings when needed.

  12. New Roles, New Responsibilities: Examining Training Needs of Repository Staff

    Directory of Open Access Journals (Sweden)

    Natasha Simons

    2012-05-01

    Full Text Available INTRODUCTION Institutional repositories play a critical role in the research lifecycle. Funding agencies are increasingly seeking an improved return on their investment in research. Repositories facilitate this process by providing storage of, and access to, institutional research outputs and, more recently, research data. While repositories are generally managed within the academic library, repository staff require different skills and knowledge compared with traditional library roles. This study reports on a survey of Australasian institutional repository staff to identify skills and knowledge sets. METHODS Institutional repository staff working at universities in Australia and New Zealand were invited to participate in an online survey which incorporated both open and closed-ended question types. RESULTS The survey found significant gaps in the current provision of formal training and coursework related to institutional repositories, which echoed findings in the United Kingdom, Italy, and the United States. DISCUSSION There is clearly a need for more and varied training opportunities for repository professionals. Repository work requires a specific set of skills that can be difficult to find and institutions will benefit from investing in training and ongoing development opportunities for repository staff. CONCLUSION The data from this study could be used to facilitate staff recruitment, development, training, and retention strategies.

  13. Evaluation of repository safety

    Energy Technology Data Exchange (ETDEWEB)

    Sagar, B.; Patrick, W.; Dasgupta, B.; Mohanty, S. [Center for Nuclear Waste Regulatory Analyses, San Antonio (United States)

    2002-07-01

    The United States high-level waste program requires evaluation of radiological safety during two distinct time intervals. The first interval, commonly referred to as the preclosure period, deals with receipt of waste at the site, transfer into disposal containers, if needed, emplacement in the underground openings, monitoring and maintenance activities, backfill and closure of the underground openings, and decontamination and decommissioning of the surface facilities of the geologic repository. The preclosure period may extend from a few tens of years to as long as a few hundred of years, depending on repository design and societal norms regarding a final decision to permanently seal the repository. During the preclosure or operational period, performance confirmation studies are conducted to provide a basis for updating and reevaluating estimates of postclosure performance and, finally, to provide a basis for a closure decision. The postclosure period during which expected repository performance must meet certain standards may range from ten thousands years, as it does in the United States, to millions of years, as it does in some European nations. Waste handling operations in the preclosure period are to be evaluated in relation to their potential effect on workers, members of general public, and the general environment. During this period, releases of radioactivity are to be monitored and appropriate actions taken whenever established limits are approached or exceeded. Preclosure safety is highly dependent on facility design, operational hardware and automated systems, operational sequences, and reliability of humans involved in operations. Preclosure safety analyses conducted before operations begin play a major role in the design process, selection of equipment, and development of operational procedures. Because of the complexity, duration, and spatial scales of the operations, analyses are conducted using mathematical models implemented in computer codes

  14. Evaluation of repository safety

    International Nuclear Information System (INIS)

    Sagar, B.; Patrick, W.; Dasgupta, B.; Mohanty, S.

    2002-01-01

    The United States high-level waste program requires evaluation of radiological safety during two distinct time intervals. The first interval, commonly referred to as the preclosure period, deals with receipt of waste at the site, transfer into disposal containers, if needed, emplacement in the underground openings, monitoring and maintenance activities, backfill and closure of the underground openings, and decontamination and decommissioning of the surface facilities of the geologic repository. The preclosure period may extend from a few tens of years to as long as a few hundred of years, depending on repository design and societal norms regarding a final decision to permanently seal the repository. During the preclosure or operational period, performance confirmation studies are conducted to provide a basis for updating and reevaluating estimates of postclosure performance and, finally, to provide a basis for a closure decision. The postclosure period during which expected repository performance must meet certain standards may range from ten thousands years, as it does in the United States, to millions of years, as it does in some European nations. Waste handling operations in the preclosure period are to be evaluated in relation to their potential effect on workers, members of general public, and the general environment. During this period, releases of radioactivity are to be monitored and appropriate actions taken whenever established limits are approached or exceeded. Preclosure safety is highly dependent on facility design, operational hardware and automated systems, operational sequences, and reliability of humans involved in operations. Preclosure safety analyses conducted before operations begin play a major role in the design process, selection of equipment, and development of operational procedures. Because of the complexity, duration, and spatial scales of the operations, analyses are conducted using mathematical models implemented in computer codes

  15. Semantic Linking of Learning Object Repositories to DBpedia

    Science.gov (United States)

    Lama, Manuel; Vidal, Juan C.; Otero-Garcia, Estefania; Bugarin, Alberto; Barro, Senen

    2012-01-01

    Large-sized repositories of learning objects (LOs) are difficult to create and also to maintain. In this paper we propose a way to reduce this drawback by improving the classification mechanisms of the LO repositories. Specifically, we present a solution to automate the LO classification of the Universia repository, a collection of more than 15…

  16. The transposition distance for phylogenetic trees

    OpenAIRE

    Rossello, Francesc; Valiente, Gabriel

    2006-01-01

    The search for similarity and dissimilarity measures on phylogenetic trees has been motivated by the computation of consensus trees, the search by similarity in phylogenetic databases, and the assessment of clustering results in bioinformatics. The transposition distance for fully resolved phylogenetic trees is a recent addition to the extensive collection of available metrics for comparing phylogenetic trees. In this paper, we generalize the transposition distance from fully resolved to arbi...

  17. The evolution of carbon-14 and tritium containing gases in a radioactive waste repository

    International Nuclear Information System (INIS)

    Jefferies, N.L.

    1990-04-01

    The principal processes which well lead to the formation of gases in a repository containing low- and intermediate-level radioactive waste have been identified as corrosion, microbiological activity and radiolysis. The largest contribution to gas production is from hydrogen, generated from anaerobic corrosion of metallic components of the waste. Substitution of the active isotopes carbon-14 and hydrogen-3 (tritium) into the bulk gases, H 2 CO 2 and CH 4 may result in a radiological hazard to man. The purpose of this paper is to assess the mechanisms by which C-14 and tritium in solid low- and intermediate-level wastes are partitioned into gases reduced by corrosion and microbial processes. (author)

  18. NIDDK Central Repository

    Data.gov (United States)

    U.S. Department of Health & Human Services — The NIDDK Central Repository stores biosamples, genetic and other data collected in designated NIDDK-funded clinical studies. The purpose of the NIDDK Central...

  19. Researching radioactive waste disposal. [Underground repository

    Energy Technology Data Exchange (ETDEWEB)

    Feates, F; Keen, N [UKAEA Research Group, Harwell. Atomic Energy Research Establishment

    1976-02-16

    At present it is planned to use the vitrification process to convert highly radioactive liquid wastes, arising from nuclear power programme, into glass which will be contained in steel cylinders for storage. The UKAEA in collaboration with other European countries is currently assessing the relative suitability of various natural geological structures as final repositories for the vitrified material. The Institute of Geological Sciences has been commissioned to specify the geological criteria that should be met by a rock structure if it is to be used for the construction of a repository though at this stage disposal sites are not being sought. The current research programme aims to obtain basic geological data about the structure of the rocks well below the surface and is expected to continue for at least three years. The results in all the European countries will then be considered so that the United Kingdom can choose a preferred method for isolating their wastes. It is only at that stage that a firm commitment may be made to select a site for a potential repository, when a far more detailed scientific research study will be instituted. Heat transfer problems and chemical effects which may occur within and around repositories are being investigated and a conceptual design study for an underground repository is being prepared.

  20. Cross Institutional Cooperation on a Shared Bit Repository

    DEFF Research Database (Denmark)

    Zierau, Eld; Kejser, Ulla Bøgvad

    2013-01-01

    This paper explores how independent institutions, such as archives and libraries, can cooperate on managing a shared bit repository with bit preservation, in order to use their resources for preservation in a more cost-effective way. It uses the OAIS Reference Model to provide a framework...... for systematically analysing institutions technical and organisational requirements for a remote bit repository. Instead of viewing a bit repository simply as Archival Storage for the institutions repositories, we argue for viewing it as consisting of a subset of functions from all entities defined by the OAIS...... Reference Model. The work is motivated by and used in a current Danish feasibility study for establishing a national bit repository. The study revealed that depending on their missions and the collections they hold, the institutions have varying requirements e.g. for bit safety, accessibility...

  1. Cross Institutional Cooperation on a Shared Bit Repository

    DEFF Research Database (Denmark)

    Zierau, Eld; Kejser, Ulla Bøgvad

    2010-01-01

    This paper explores how independent institutions, such as archives and libraries, can cooperate on managing a shared bit repository with bit preservation in order to use their resources for preservation n in a more cost-effective way. It uses the OAIS Reference Model to provide a framework...... for systematically analysing the technical and organizational requirements of institutions for a remote bit repository. Instead of viewing a bit repository simply as Archival Storage for the institutions’ repositories, we argue for viewing it as consisting of a subset of functions from all entities defined...... by the OAIS Reference Model. The work is motivated by and used in a current Danish feasibility study for establishing a national bit repository. The study revealed that depending on their missions and the collections they hold, the institutions have varying requirements, such as for bit safety, accessibility...

  2. Phylogenetic Trees From Sequences

    Science.gov (United States)

    Ryvkin, Paul; Wang, Li-San

    In this chapter, we review important concepts and approaches for phylogeny reconstruction from sequence data.We first cover some basic definitions and properties of phylogenetics, and briefly explain how scientists model sequence evolution and measure sequence divergence. We then discuss three major approaches for phylogenetic reconstruction: distance-based phylogenetic reconstruction, maximum parsimony, and maximum likelihood. In the third part of the chapter, we review how multiple phylogenies are compared by consensus methods and how to assess confidence using bootstrapping. At the end of the chapter are two sections that list popular software packages and additional reading.

  3. The phylogenetic likelihood library.

    Science.gov (United States)

    Flouri, T; Izquierdo-Carrasco, F; Darriba, D; Aberer, A J; Nguyen, L-T; Minh, B Q; Von Haeseler, A; Stamatakis, A

    2015-03-01

    We introduce the Phylogenetic Likelihood Library (PLL), a highly optimized application programming interface for developing likelihood-based phylogenetic inference and postanalysis software. The PLL implements appropriate data structures and functions that allow users to quickly implement common, error-prone, and labor-intensive tasks, such as likelihood calculations, model parameter as well as branch length optimization, and tree space exploration. The highly optimized and parallelized implementation of the phylogenetic likelihood function and a thorough documentation provide a framework for rapid development of scalable parallel phylogenetic software. By example of two likelihood-based phylogenetic codes we show that the PLL improves the sequential performance of current software by a factor of 2-10 while requiring only 1 month of programming time for integration. We show that, when numerical scaling for preventing floating point underflow is enabled, the double precision likelihood calculations in the PLL are up to 1.9 times faster than those in BEAGLE. On an empirical DNA dataset with 2000 taxa the AVX version of PLL is 4 times faster than BEAGLE (scaling enabled and required). The PLL is available at http://www.libpll.org under the GNU General Public License (GPL). © The Author(s) 2014. Published by Oxford University Press, on behalf of the Society of Systematic Biologists.

  4. Tools for Managing Repository Objects

    OpenAIRE

    Banker, Rajiv D.; Isakowitz, Tomas; Kauffman, Robert J.; Kumar, Rachna; Zweig, Dani

    1993-01-01

    working Paper Series: STERN IS-93-46 The past few years have seen the introduction of repository-based computer aided software engineering (CASE) tools which may finally enable us to develop software which is reliable and affordable. With the new tools come new challenges for management: Repository-based CASE changes software development to such an extent that traditional approaches to estimation, performance, and productivity assessment may no longer suffice - if they ever...

  5. Repository seal materials performance for a SALT Repository Project 5-year code/model development plan: Draft

    International Nuclear Information System (INIS)

    1987-06-01

    This document describes an integrated laboratory testing and model development effort for the seal system for a high-level nuclear waste repository in salt. The testing and modeling efforts are designed to determine seal material response in the repository environment, to provide models of seal system components for performance assessment, and to assist in the development of seal system designs. A code/model development and performance analysis program will be performed to predict the short- and long-term response of seal materials and seal components. The results from these analyses will be used to support the material testing activities on this contract and to support performance assessment activities that are conducted in other parts of the Salt Repository Project (SRP). 48 refs., 15 figs., 4 tabs

  6. Locating a tree in a phylogenetic network

    NARCIS (Netherlands)

    Iersel, van L.J.J.; Semple, C.; Steel, M.A.

    2010-01-01

    Phylogenetic trees and networks are leaf-labelled graphs that are used to describe evolutionary histories of species. The Tree Containment problem asks whether a given phylogenetic tree is embedded in a given phylogenetic network. Given a phylogenetic network and a cluster of species, the Cluster

  7. Building the repositories to serve

    International Nuclear Information System (INIS)

    Lersch, D.

    1994-01-01

    The project to design and build the Superconducting Super Collider (SSC) Laboratory also includes the exciting opportunity to implement client/server information systems. Lab technologists were eager to take advantage of the cost savings inherent in the open systems and a distributed, client server environment and, at the same time, conscious of the need to provide secure repositories for sensitive data as well as a schedule sensitive acquisition strategy for mission critical software. During the first year of project activity, micro-based project management and business support systems were acquired and implemented to support a small study project of less than 400 people allocating contracts of less than $1 million. The transition to modern business systems capable of supporting more than 10,000 participants (world wide) who would be researching and developing the new technologies that would support the world's largest scientific instrument, a 42 Tevatron, superconducting, super collider became a mission critical event. This paper will present the SSC Laboratory's strategy to balance its commitment to open systems, structured query language (SQL) standards and its success with acquiring commercial off the shelf software to support immediate goals. Included will be an outline of the vital roles played by other labs (Livermore, CERN, Brookhaven, Fermi and others) and a discussion of future collaboration potentials to leverage the information activities of all Department of Energy funded labs

  8. Building the repositories to serve

    International Nuclear Information System (INIS)

    Lersch, D.

    1993-04-01

    The project to design and build the Superconducting Super Collider (SSC) Laboratory also includes the exciting opportunity to implement client/server information systems. Lab technologists were eager to take advantage of the cost savings inherent in the open systems and a distributed, client server environment and, at the same time, conscious of the need to provide secure repositories for sensitive data as well as a schedule sensitive acquisition strategy for mission critical software. During the first year of project activity, micro-based project management and business support systems were acquired and implemented to support a small study project of less than 400 people allocating contracts of less than $1 million. The transition to modern business systems capable of supporting more than 10,000 participants (world wide) who would be researching and developing the new technologies that would support the world's largest scientific instrument, a 42 Tevatron, superconducting, super collider became a mission critical event. This paper will present the SSC Laboratory's strategy to balance our commitment to open systems, structured query language (SQL) standards and our success with acquiring commercial off the shelf software (COTS) to support our immediate goals. Included will be an outline of the vital roles played by other labs (Livermore, CERN, Brookhaven, Fermi and others) and a discussion of future collaboration potentials to leverage the information activities of all Department of Energy (DOE) funded labs

  9. Loy Yang A - Australia's largest privatisation

    International Nuclear Information System (INIS)

    Yenckin, C.

    1997-01-01

    The recent A$4,746 million privatisation of the 2000MW Loy Yang A power station and the Loy Yang coal mine by the Victorian Government is Australia's largest privatisation and one of 1997's largest project financing deals. (author)

  10. Gas generation and release from the VLJ repository

    International Nuclear Information System (INIS)

    Vieno, T.; Valkiainen, M.

    1992-01-01

    The VLJ repository is an underground disposal facility located at the Olkiluoto nuclear power plant site on the west coast of Finland. The repository will house low (LLW) and intermediate level radioactive wastes (MLW) from the TVO I and TVO II BWR's and the spent fuel interim store at Olkiluoto. The disposal rooms have been excavated at a depth of 60... 100 meters in the crystalline bedrock. They consist of two rock silos - one for the LLW and the other for MLW. Low level waste is usually packed in steel drums and steel boxes. Medium level wastes consists of bituminized resins in steel drums. Wastes packages are emplaced in concrete boxes before transportation into the repository. Low level wastes are emplaced in the shotcreted rock silo where no backfilling will used. For medium level wastes, a separate silo of reinforced concrete has been constructed inside the rock silo. No backfilling will be used inside the concrete silo and an opening will be made in the lid of the concrete silo for gas release. The microbial degradation of low level wastes is the principle gas generation process in the repository. The gas transport though the bedrock covering the repository is evaluated with the help of ground water flow study. It is recommended that the shotcrete lining on the ceiling of the repository cavern is partly removed before the final sealing of the repository. Provided that dissipation of gases from the disposal cavern into the rock can been assured, the overall effects of gas generation on the long-term safety of the repository are insignificant. 10 refs., 6 figs

  11. Molecular Phylogenetics: Concepts for a Newcomer.

    Science.gov (United States)

    Ajawatanawong, Pravech

    Molecular phylogenetics is the study of evolutionary relationships among organisms using molecular sequence data. The aim of this review is to introduce the important terminology and general concepts of tree reconstruction to biologists who lack a strong background in the field of molecular evolution. Some modern phylogenetic programs are easy to use because of their user-friendly interfaces, but understanding the phylogenetic algorithms and substitution models, which are based on advanced statistics, is still important for the analysis and interpretation without a guide. Briefly, there are five general steps in carrying out a phylogenetic analysis: (1) sequence data preparation, (2) sequence alignment, (3) choosing a phylogenetic reconstruction method, (4) identification of the best tree, and (5) evaluating the tree. Concepts in this review enable biologists to grasp the basic ideas behind phylogenetic analysis and also help provide a sound basis for discussions with expert phylogeneticists.

  12. Post-closure radiation dose assessment for Yucca Mountain repository

    International Nuclear Information System (INIS)

    Jia Mingyan; Zhang Xiabin; Yang Chuncai

    2006-01-01

    A brief introduction of post-closure long-term radiation safety assessment results was represented for the yucca mountain high-level waste geographic disposal repository. In 1 million years after repository closure, for the higher temperature repository operating mode, the peak annual dose would be 150 millirem (120 millirem under the lower-temperature operating mode) to a reasonably maximally exposed individual approximately 18 kilometers (11 miles) from the repository. The analysis of a drilling intrusion event occurring at 30,000 years indicated a peak of the mean annual dose to the reasonably maximally exposed individual approximately 18 kilometers (11 miles) downstream of the repository would be 0.002 millirem. The analysis of an igneous activity scenario, including a volcanic eruption event and igneous intrusion event indicated a peak of the mean annual dose to the reasonably maximally exposed individual approximately 18 kilometers downstream of the repository would be 0.1 millirem. (authors)

  13. Design of repository sealing systems - 1981

    International Nuclear Information System (INIS)

    Ellison, R.D.; Shukla, D.K.; Kelsall, P.C.; D'Appolonia Consulting Engineers, Albuquerque, NM)

    1982-01-01

    Isolating nuclear waste in geologic repositories will require the sealing of penetrations such as access shafts and tunnels, disposal rooms, and exploration boreholes. This paper discusses seal designs developed for a repository in bedded salt referenced to the stratigraphy of southeastern New Mexico. Designs are based on a multiple component concept whereby individual components are designed for a specific function and location. For a repository in salt the major function of the seals is to exclude groundwater inflow. Two main types of component are included for this purpose: (1) bulk-heads are dense concrete structures keyed into the walls of the penetration and are intended to reduce flow at the interface between the seal and the salt; (2) backfills are granular materials compacted in place in the penetration. In the repository the major backfill material is crushed salt, which is expected to consolidate and recrystallize as the rooms close in response to salt creep. Densely compacted clays will be used as backfill in the shafts closer to potential sources of water inflow. 22 references, 10 figures, 1 table

  14. Creation of Data Repositories to Advance Nursing Science.

    Science.gov (United States)

    Perazzo, Joseph; Rodriguez, Margaret; Currie, Jackson; Salata, Robert; Webel, Allison R

    2017-12-01

    Data repositories are a strategy in line with precision medicine and big data initiatives, and are an efficient way to maximize data utility and form collaborative research relationships. Nurse researchers are uniquely positioned to make a valuable contribution using this strategy. The purpose of this article is to present a review of the benefits and challenges associated with developing data repositories, and to describe the process we used to develop and maintain a data repository in HIV research. Systematic planning, data collection, synthesis, and data sharing have enabled us to conduct robust cross-sectional and longitudinal analyses with more than 200 people living with HIV. Our repository building has also led to collaboration and training, both in and out of our organization. We present a pragmatic and affordable way that nurse scientists can build and maintain a data repository, helping us continue to make to our understanding of health phenomena.

  15. Reducing Psychological Resistance to Digital Repositories

    Directory of Open Access Journals (Sweden)

    Brian Quinn

    2010-06-01

    Full Text Available The potential value of digital repositories is dependent on the cooperation of scholars to deposit their work. Although many researchers have been resistant to submitting their work, the literature on digital repositories contains very little research on the psychology of resistance. This article looks at the psychological literature on resistance and explores what its implications might be for reducing the resistance of scholars to submitting their work to digital repositories. Psychologists have devised many potentially useful strategies for reducing resistance that might be used to address the problem; this article examines these strategies and how they might be applied.

  16. Augmenting interoperability across repositories architectural ideas

    CERN Multimedia

    CERN. Geneva

    2005-01-01

    The aDORe digital repository architecture designed and implemented by the Los Alamos Research Library is fully standards-based and highly modular, with the various components of the architecture interacting in a protocol-driven manner. Although aDORe was designed for use in the context of the Los Alamos Library, its modular and standards-based design has led to interesting insights regarding possible new levels of interoperability in a federation of heterogeneous repositories. The presentation will discuss these insights, and will illustrate that attractive federations of repositories can be built by introducing rather basic interoperability requirements. The presentation will also show that, once these requirements are met, a powerful service framework that overlays the federation can emerge.

  17. Executive-style briefings on selected repository design issues

    International Nuclear Information System (INIS)

    1978-01-01

    This document is a collection of executive-style briefings on selected repository design issues. Most of the briefings discuss differences between the US repository design bases presented in US Working Draft on Repository Physical Descriptions in a Salt Formation, prepared in support of INFCE discussions of May 1978 and the FRG-Netherlands design bases, presented in Design Study of a Radioactive Waste Repository to be Mined in a Medium-Size Salt Dome by Hamstra and Velzeboer, Netherlands Energy Research Foundation, January 1978. Advantages and disadvantages of the two sets of design bases are discussed, and the impacts of adopting either of these bases on the other's programs and positions are identified

  18. Repository-analog experiments of nuclear waste leaching and migration

    International Nuclear Information System (INIS)

    Seitz, M.G.

    1982-01-01

    The potential for radionuclide migration from a breached nuclear-waste repository depends on the leaching and subsequent interaction of the leached radionuclides with materials in the groundwater flow path. An attempt is made to consider all interactions using experiments that integrate repository materials. Results of a repository-analog experiment using borosilicate glass, fissured granite, and flowing water suggest: (1) plutonium was immobile possibly because of its low solubility; (2) caesium migrated down slowly because of sorption; and (3) neptunium remained oxidized even in water of low oxidation potential. By summing the effects of all interactions, not just sorption, the repository-analog experiment produced radionuclide migration that could be expected from a breached repository. (author)

  19. Publishers and repositories

    CERN Multimedia

    CERN. Geneva

    2007-01-01

    The impact of self-archiving on journals and publishers is an important topic for all those involved in scholarly communication. There is some evidence that the physics arXiv has had no impact on physics journals, while 'economic common sense' suggests that some impact is inevitable. I shall review recent studies of librarian attitudes towards repositories and journals, and place this in the context of IOP Publishing's experiences with arXiv. I shall offer some possible reasons for the mis-match between these perspectives and then discuss how IOP has linked with arXiv and experimented with OA publishing. As well as launching OA journals we have co-operated with Cornell and the arXiv on Eprintweb.org, a platform that offers new features to repository users. View Andrew Wray's biography

  20. Business models for digital repositories

    CERN Document Server

    CERN. Geneva; Bjørnshauge, Lars

    2007-01-01

    Those setting up, or planning to set up, a digital repository may be interested to know more about what has gone before them. What is involved, what is the cost, how many people are needed, how have others made the case to their institution, and how do you get anything into it once it is built? I have recently undertaken a study of European repository business models for the DRIVER project and will present an overview of the findings.

  1. Waste package/repository impact study: Final report

    Energy Technology Data Exchange (ETDEWEB)

    1985-09-01

    The Waste Package/Repository Impact Study was conducted to evaluate the feasibility of using the current reference salt waste package in the salt repository conceptual design. All elements of the repository that may impact waste package parameters, i.e., (size, weight, heat load) were evaluated. The repository elements considered included waste hoist feasibility, transporter and emplacement machine feasibility, subsurface entry dimensions, feasibility of emplacement configuration, and temperature limits. The evaluations are discussed in detail with supplemental technical data included in Appendices to this report, as appropriate. Results and conclusions of the evaluations are discussed in light of the acceptability of the current reference waste package as the basis for salt conceptual design. Finally, recommendations are made relative to the salt project position on the application of the reference waste package as a basis for future design activities. 31 refs., 11 figs., 11 tabs.

  2. Waste package/repository impact study: Final report

    International Nuclear Information System (INIS)

    1985-09-01

    The Waste Package/Repository Impact Study was conducted to evaluate the feasibility of using the current reference salt waste package in the salt repository conceptual design. All elements of the repository that may impact waste package parameters, i.e., (size, weight, heat load) were evaluated. The repository elements considered included waste hoist feasibility, transporter and emplacement machine feasibility, subsurface entry dimensions, feasibility of emplacement configuration, and temperature limits. The evaluations are discussed in detail with supplemental technical data included in Appendices to this report, as appropriate. Results and conclusions of the evaluations are discussed in light of the acceptability of the current reference waste package as the basis for salt conceptual design. Finally, recommendations are made relative to the salt project position on the application of the reference waste package as a basis for future design activities. 31 refs., 11 figs., 11 tabs

  3. Repository exploration

    International Nuclear Information System (INIS)

    Pentz, D.L.

    1984-01-01

    This paper discusses exploration objectives and requirements for a nuclear repository in the U.S.A. The importance of designing the exploration program to meet the system performance objectives is emphasized and some examples of the extent of exploration required before the License Application for Construction Authorization is granted are also discussed

  4. Locating a tree in a phylogenetic network

    OpenAIRE

    van Iersel, Leo; Semple, Charles; Steel, Mike

    2010-01-01

    Phylogenetic trees and networks are leaf-labelled graphs that are used to describe evolutionary histories of species. The Tree Containment problem asks whether a given phylogenetic tree is embedded in a given phylogenetic network. Given a phylogenetic network and a cluster of species, the Cluster Containment problem asks whether the given cluster is a cluster of some phylogenetic tree embedded in the network. Both problems are known to be NP-complete in general. In this article, we consider t...

  5. Nonbinary tree-based phylogenetic networks

    OpenAIRE

    Jetten, Laura; van Iersel, Leo

    2016-01-01

    Rooted phylogenetic networks are used to describe evolutionary histories that contain non-treelike evolutionary events such as hybridization and horizontal gene transfer. In some cases, such histories can be described by a phylogenetic base-tree with additional linking arcs, which can for example represent gene transfer events. Such phylogenetic networks are called tree-based. Here, we consider two possible generalizations of this concept to nonbinary networks, which we call tree-based and st...

  6. Encoding phylogenetic trees in terms of weighted quartets.

    Science.gov (United States)

    Grünewald, Stefan; Huber, Katharina T; Moulton, Vincent; Semple, Charles

    2008-04-01

    One of the main problems in phylogenetics is to develop systematic methods for constructing evolutionary or phylogenetic trees. For a set of species X, an edge-weighted phylogenetic X-tree or phylogenetic tree is a (graph theoretical) tree with leaf set X and no degree 2 vertices, together with a map assigning a non-negative length to each edge of the tree. Within phylogenetics, several methods have been proposed for constructing such trees that work by trying to piece together quartet trees on X, i.e. phylogenetic trees each having four leaves in X. Hence, it is of interest to characterise when a collection of quartet trees corresponds to a (unique) phylogenetic tree. Recently, Dress and Erdös provided such a characterisation for binary phylogenetic trees, that is, phylogenetic trees all of whose internal vertices have degree 3. Here we provide a new characterisation for arbitrary phylogenetic trees.

  7. Learning frameworks as an alternative to repositories

    DEFF Research Database (Denmark)

    Dalsgaard, Christian

    2005-01-01

    This paper presents the concept of ‘learning frameworks’. The purpose of the paper is to discuss and question collections of digital learning objects in large repositories and to argue for large learning frameworks which organise a number of thematically related digital learning materials. Whereas...... a learning object repository contains all kinds of materials, a learning framework consists of an organisation of materials related to a common theme. Further, a repository consists of single, self-contained objects, whereas a learning framework is an open-ended environment which presents a number...

  8. Status of Proposed Repository for Latin-American Spent Fuel

    Energy Technology Data Exchange (ETDEWEB)

    Ferrada, J.J.

    2004-10-04

    This report compiles preliminary information that supports the premise that a repository is needed in Latin America and analyzes the nuclear situation (mainly in Argentina and Brazil) in terms of nuclear capabilities, inventories, and regional spent-fuel repositories. The report is based on several sources and summarizes (1) the nuclear capabilities in Latin America and establishes the framework for the need of a permanent repository, (2) the International Atomic Energy Agency (IAEA) approach for a regional spent-fuel repository and describes the support that international institutions are lending to this issue, (3) the current situation in Argentina in order to analyze the Argentinean willingness to find a location for a deep geological repository, and (4) the issues involved in selecting a location for the repository and identifies a potential location. This report then draws conclusions based on an analysis of this information. The focus of this report is mainly on spent fuel and does not elaborate on other radiological waste sources.

  9. A scalable method for identifying frequent subtrees in sets of large phylogenetic trees.

    Science.gov (United States)

    Ramu, Avinash; Kahveci, Tamer; Burleigh, J Gordon

    2012-10-03

    We consider the problem of finding the maximum frequent agreement subtrees (MFASTs) in a collection of phylogenetic trees. Existing methods for this problem often do not scale beyond datasets with around 100 taxa. Our goal is to address this problem for datasets with over a thousand taxa and hundreds of trees. We develop a heuristic solution that aims to find MFASTs in sets of many, large phylogenetic trees. Our method works in multiple phases. In the first phase, it identifies small candidate subtrees from the set of input trees which serve as the seeds of larger subtrees. In the second phase, it combines these small seeds to build larger candidate MFASTs. In the final phase, it performs a post-processing step that ensures that we find a frequent agreement subtree that is not contained in a larger frequent agreement subtree. We demonstrate that this heuristic can easily handle data sets with 1000 taxa, greatly extending the estimation of MFASTs beyond current methods. Although this heuristic does not guarantee to find all MFASTs or the largest MFAST, it found the MFAST in all of our synthetic datasets where we could verify the correctness of the result. It also performed well on large empirical data sets. Its performance is robust to the number and size of the input trees. Overall, this method provides a simple and fast way to identify strongly supported subtrees within large phylogenetic hypotheses.

  10. Gabbro as a host rock for a nuclear waste repository

    International Nuclear Information System (INIS)

    Ahlbom, K.; Leijon, B.; Smellie, J.; Liedholm, M.

    1992-09-01

    As an alternative to granitic rocks, gabbro and other basic rock types have been investigated with respect to their suitability to host a nuclear waste repository. The present report summarizes and examines existing geoscientific knowledge of relevance in assessing the potential merits of gabbro as a repository host rock. Implications in terms of site selection, repository construction and post-closure repository performance are also discussed. The objective of the study is to provide a basis for decisions as regards future consideration of the gabbro alternative. It is found that there are rather few gabbro bodies in Sweden, that are potentially of sufficient size to host a repository. Thus, gabbro offers little latitude as regards site selection. In comparison to siting a repository in granitic rocks, this is a major disadvantage, and it may in fact remove gabbro from further consideration. The potential advantages of gabbro refer to repository performance, and include low hydraulic conductivity and a chemical environment promoting efficient radionuclide retardation. However, results from field investigations show that groundwater flow in gabbro bodies is largely controlled by intersecting heterogeneities, in particular granitic dykes, that are significantly more conductive to water than the gabbro. In the far-field scale significant to repository performance, this may reduce or eliminate the potential effects of favourable hydraulic and chemical characteristics of the gabbro itself. In conclusion, there are apparent difficulties associated with siting a repository in gabbro, due to lack of sufficiently large gabbro bodies. On the basis of the present state of knowledge, no decisive differences can be demonstrated when comparing gabbro with granitic rocks, neither with respects to repository construction, nor as regards repository performance. (au)

  11. Design and production of the KBS-3 repository

    International Nuclear Information System (INIS)

    Moren, Lena

    2010-12-01

    The report contains the common basis for a set of Production reports, presenting how the KBS-3 repository is designed, produced and inspected. The set of reports is included in the safety report for the KBS-3 repository and repository facility. The report presents the role of the Production reports within the safety report and their common purposes and objectives. An important part of the report is to present the background and sources to the principles to be applied in the design, the functions of the KBS-3 repository and the barrier functions the engineered barriers and rock. Further, the methodology to substantiate detailed design premises for the engineered barriers, underground openings and other parts of the KBS-3 repository is presented. The report also gives an overview of the KBS-3 system and its facilities and the production lines for the spent fuel, the engineered barriers and underground openings. Finally, an introduction to quality management, safety classification and their application is given

  12. Design and production of the KBS-3 repository

    Energy Technology Data Exchange (ETDEWEB)

    Moren, Lena

    2010-12-15

    The report contains the common basis for a set of Production reports, presenting how the KBS-3 repository is designed, produced and inspected. The set of reports is included in the safety report for the KBS-3 repository and repository facility. The report presents the role of the Production reports within the safety report and their common purposes and objectives. An important part of the report is to present the background and sources to the principles to be applied in the design, the functions of the KBS-3 repository and the barrier functions the engineered barriers and rock. Further, the methodology to substantiate detailed design premises for the engineered barriers, underground openings and other parts of the KBS-3 repository is presented. The report also gives an overview of the KBS-3 system and its facilities and the production lines for the spent fuel, the engineered barriers and underground openings. Finally, an introduction to quality management, safety classification and their application is given

  13. 10 CFR 51.67 - Environmental information concerning geologic repositories.

    Science.gov (United States)

    2010-01-01

    ... 10 Energy 2 2010-01-01 2010-01-01 false Environmental information concerning geologic repositories... information concerning geologic repositories. (a) In lieu of an environmental report, the Department of Energy... connection with any geologic repository developed under Subtitle A of Title I, or under Title IV, of the...

  14. Conceptual design of repository facilities

    International Nuclear Information System (INIS)

    Beale, H.; Engelmann, H.J.; Souquet, G.; Mayence, M.; Hamstra, J.

    1980-01-01

    As part of the European Economic Communities programme of research into underground disposal of radioactive wastes repository design studies have been carried out for application in salt deposits, argillaceous formations and crystalline rocks. In this paper the design aspects of repositories are reviewed and conceptual designs are presented in relation to the geological formations under consideration. Emphasis has been placed on the disposal of vitrified high level radioactive wastes although consideration has been given to other categories of radioactive waste

  15. GreyGuide Forum and Repository

    OpenAIRE

    Biagioni, Stefania; Farace, Dominic

    2014-01-01

    We present the GreyGuide: an online forum and repository of good practice in the field of grey literature. The launch of the GreyGuide Repository took place in December 2013 at the Fifteenth International Conference on Grey Literature. Since then, the acquisition of both proposed and published good practices are underway. The GreyGuide as an online forum is currently in a developmental stage and is influenced by the changes that have taken place in GreyNet's new infrastructure commencing in J...

  16. Tree-Based Unrooted Phylogenetic Networks.

    Science.gov (United States)

    Francis, A; Huber, K T; Moulton, V

    2018-02-01

    Phylogenetic networks are a generalization of phylogenetic trees that are used to represent non-tree-like evolutionary histories that arise in organisms such as plants and bacteria, or uncertainty in evolutionary histories. An unrooted phylogenetic network on a non-empty, finite set X of taxa, or network, is a connected, simple graph in which every vertex has degree 1 or 3 and whose leaf set is X. It is called a phylogenetic tree if the underlying graph is a tree. In this paper we consider properties of tree-based networks, that is, networks that can be constructed by adding edges into a phylogenetic tree. We show that although they have some properties in common with their rooted analogues which have recently drawn much attention in the literature, they have some striking differences in terms of both their structural and computational properties. We expect that our results could eventually have applications to, for example, detecting horizontal gene transfer or hybridization which are important factors in the evolution of many organisms.

  17. Ventilation System Strategy for a Prospective Korean Radioactive Waste Repository

    International Nuclear Information System (INIS)

    Kim, Jin; Kwon, Sang Ki

    2005-01-01

    In the stage of conceptual design for the construction and operation of the geologic repository for radioactive wastes, it is important to consider a repository ventilation system which serves the repository working environment, hygiene and safety of the public at large, and will allow safe maintenance like moisture content elimination in repository for the duration of the repositories life, construction/operation/closure, also allowing safe waste transportation and emplacement. This paper describes the possible ventilation system design criteria and requirements for the prospective Korean radioactive waste repositories with emphasis on the underground rock cavity disposal method in the both cases of low and medium-level and high-level wastes. It was found that the most important concept is separate ventilation systems for the construction (development) and waste emplacement (storage) activities. In addition, ventilation network system modeling, natural ventilation, ventilation monitoring systems and real time ventilation simulation, and fire simulation and emergency system in the repository are briefly discussed.

  18. Types of safety assessments of near surface repository for radioactive waste

    International Nuclear Information System (INIS)

    Mateeva, M.

    2004-01-01

    The purpose of this article is to presents the classification of different types safety assessments of near surface repository for low and intermediate level radioactive waste substantiated with results of safety assessments generated in Bulgaria. The different approach of safety assessments applied for old existing repository as well as for site selection for construction new repository is outlined. The regulatory requirements in Bulgaria define three main types of assessments: Safety assessment; Technical substation of repository safety; Assessment of repository influence on environment that is in form of report prepared from the Ministry of environment and waters on the base of results obtained in two first types of assessments. Additionally first type is subdivided in three categories - preliminary safety assessment, safety assessment and post closure safety assessment, which are generated using deterministic approach. The technical substation of repository safety is generated using probabilistic approach. Safety assessment results that are presented here are based on evaluation of existing old repository type 'Radon' in Novi Han and real site selection procedure for new near surface repository for low and intermediate level radioactive waste from nuclear power station in Kozloduy. The important role of safety assessment for improvement the repository safety as well as for repository licensing, correct site selection and right choice of engineer barriers and repository design is discussed using generated results. (author)

  19. Data Stewardship: Environmental Data Curation and a Web-of-Repositories

    Directory of Open Access Journals (Sweden)

    Karen S. Baker

    2009-10-01

    Full Text Available Scientific researchers today frequently package measurements and associated metadata as digital datasets in anticipation of storage in data repositories. Through the lens of environmental data stewardship, we consider the data repository as an organizational element central to data curation. One aspect of non-commercial repositories, their distance-from-origin of the data, is explored in terms of near and remote categories. Three idealized repository types are distinguished – local, center, and archive - paralleling research, resource, and reference collection categories respectively. Repository type characteristics such as scope, structure, and goals are discussed. Repository similarities in terms of roles, activities and responsibilities are also examined. Data stewardship is related to care of research data and responsible scientific communication supported by an infrastructure that coordinates curation activities; data curation is defined as a set of repeated and repeatable activities focusing on tending data and creating data products within a particular arena. The concept of “sphere-of-context” is introduced as an aid to distinguishing repository types. Conceptualizing a “web-of-repositories” accommodates a variety of repository types and represents an ecologically inclusive approach to data curation.

  20. Harvesting NASA's Common Metadata Repository

    Science.gov (United States)

    Shum, D.; Mitchell, A. E.; Durbin, C.; Norton, J.

    2017-12-01

    As part of NASA's Earth Observing System Data and Information System (EOSDIS), the Common Metadata Repository (CMR) stores metadata for over 30,000 datasets from both NASA and international providers along with over 300M granules. This metadata enables sub-second discovery and facilitates data access. While the CMR offers a robust temporal, spatial and keyword search functionality to the general public and international community, it is sometimes more desirable for international partners to harvest the CMR metadata and merge the CMR metadata into a partner's existing metadata repository. This poster will focus on best practices to follow when harvesting CMR metadata to ensure that any changes made to the CMR can also be updated in a partner's own repository. Additionally, since each partner has distinct metadata formats they are able to consume, the best practices will also include guidance on retrieving the metadata in the desired metadata format using CMR's Unified Metadata Model translation software.

  1. Core Certification of Data Repositories: Trustworthiness and Long-Term Stewardship

    Science.gov (United States)

    de Sherbinin, A. M.; Mokrane, M.; Hugo, W.; Sorvari, S.; Harrison, S.

    2017-12-01

    Scientific integrity and norms dictate that data created and used by scientists should be managed, curated, and archived in trustworthy data repositories thus ensuring that science is verifiable and reproducible while preserving the initial investment in collecting data. Research stakeholders including researchers, science funders, librarians, and publishers must also be able to establish the trustworthiness of data repositories they use to confirm that the data they submit and use remain useful and meaningful in the long term. Data repositories are increasingly recognized as a key element of the global research infrastructure and the importance of establishing their trustworthiness is recognised as a prerequisite for efficient scientific research and data sharing. The Core Trustworthy Data Repository Requirements are a set of universal requirements for certification of data repositories at the core level (see: https://goo.gl/PYsygW). They were developed by the ICSU World Data System (WDS: www.icsu-wds.org) and the Data Seal of Approval (DSA: www.datasealofapproval.org)—the two authoritative organizations responsible for the development and implementation of this standard to be further developed under the CoreTrustSeal branding . CoreTrustSeal certification of data repositories involves a minimally intensive process whereby repositories supply evidence that they are sustainable and trustworthy. Repositories conduct a self-assessment which is then reviewed by community peers. Based on this review CoreTrustSeal certification is granted by the CoreTrustSeal Standards and Certification Board. Certification helps data communities—producers, repositories, and consumers—to improve the quality and transparency of their processes, and to increase awareness of and compliance with established standards. This presentation will introduce the CoreTrustSeal certification requirements for repositories and offer an opportunity to discuss ways to improve the contribution of

  2. United States Crystalline Repository Project - key research areas

    International Nuclear Information System (INIS)

    Patera, E.S.

    1986-01-01

    The Crystalline Repository Project is responsible for siting the second high-level nuclear waste repository in crystalline rock for the US Department of Energy. A methodology is being developed to define data and information needs and a way to evaluate that information. The areas of research the Crystalline Repository Project is involved in include fluid flow in a fractured network, coupled thermal, chemical and flow processes and cooperation in other nations and OECD research programs

  3. Towards Content Development For Institutional Digital Repository ...

    African Journals Online (AJOL)

    The growth in Information and Communication Technology has lead to the emergence of Institutional Digital Repository, a digital archive for the preservation and dissemination of institutional research outputs. Institutional Digital Repositories make possible global dissemination of research outputs through the use of the ...

  4. Groundwater flow modelling of an abandoned partially open repository

    Energy Technology Data Exchange (ETDEWEB)

    Bockgaard, Niclas (Golder Associates AB (Sweden))

    2010-12-15

    As a part of the license application, according to the nuclear activities act, for a final repository for spent nuclear fuel at Forsmark, the Swedish Nuclear Fuel and Waste Management Company (SKB) has undertaken a series of groundwater flow modelling studies. These represent time periods with different hydraulic conditions and the simulations carried out contribute to the overall evaluation of the repository design and long-term radiological safety. The modelling study presented here serves as an input for analyses of so-called future human actions that may affect the repository. The objective of the work was to investigate the hydraulic influence of an abandoned partially open repository. The intention was to illustrate a pessimistic scenario of the effect of open tunnels in comparison to the reference closure of the repository. The effects of open tunnels were studied for two situations with different boundary conditions: A 'temperate' case with present-day boundary conditions and a generic future 'glacial' case with an ice sheet covering the repository. The results were summarized in the form of analyses of flow in and out from open tunnels, the effect on hydraulic head and flow in the surrounding rock volume, and transport performance measures of flow paths from the repository to surface

  5. Groundwater flow modelling of an abandoned partially open repository

    International Nuclear Information System (INIS)

    Bockgaard, Niclas

    2010-12-01

    As a part of the license application, according to the nuclear activities act, for a final repository for spent nuclear fuel at Forsmark, the Swedish Nuclear Fuel and Waste Management Company (SKB) has undertaken a series of groundwater flow modelling studies. These represent time periods with different hydraulic conditions and the simulations carried out contribute to the overall evaluation of the repository design and long-term radiological safety. The modelling study presented here serves as an input for analyses of so-called future human actions that may affect the repository. The objective of the work was to investigate the hydraulic influence of an abandoned partially open repository. The intention was to illustrate a pessimistic scenario of the effect of open tunnels in comparison to the reference closure of the repository. The effects of open tunnels were studied for two situations with different boundary conditions: A 'temperate' case with present-day boundary conditions and a generic future 'glacial' case with an ice sheet covering the repository. The results were summarized in the form of analyses of flow in and out from open tunnels, the effect on hydraulic head and flow in the surrounding rock volume, and transport performance measures of flow paths from the repository to surface

  6. Current Status of Deep Geological Repository Development

    International Nuclear Information System (INIS)

    Budnitz, R J

    2005-01-01

    This talk provided an overview of the current status of deep-geological-repository development worldwide. Its principal observation is that a broad consensus exists internationally that deep-geological disposal is the only long-term solution for disposition of highly radioactive nuclear waste. Also, it is now clear that the institutional and political aspects are as important as the technical aspects in achieving overall progress. Different nations have taken different approaches to overall management of their highly radioactive wastes. Some have begun active programs to develop a deep repository for permanent disposal: the most active such programs are in the United States, Sweden, and Finland. Other countries (including France and Russia) are still deciding on whether to proceed quickly to develop such a repository, while still others (including the UK, China, Japan) have affirmatively decided to delay repository development for a long time, typically for a generation of two. In recent years, a major conclusion has been reached around the world that there is very high confidence that deep repositories can be built, operated, and closed safely and can meet whatever safety requirements are imposed by the regulatory agencies. This confidence, which has emerged in the last few years, is based on extensive work around the world in understanding how repositories behave, including both the engineering aspects and the natural-setting aspects, and how they interact together. The construction of repositories is now understood to be technically feasible, and no major barriers have been identified that would stand in the way of a successful project. Another major conclusion around the world is that the overall cost of a deep repository is not as high as some had predicted or feared. While the actual cost will not be known in detail until the costs are incurred, the general consensus is that the total life-cycle cost will not exceed a few percent of the value of the

  7. Earthquakes - a danger to deep-lying repositories?

    International Nuclear Information System (INIS)

    2012-03-01

    This booklet issued by the Swiss National Cooperative for the Disposal of Radioactive Waste NAGRA takes a look at geological factors concerning earthquakes and the safety of deep-lying repositories for nuclear waste. The geological processes involved in the occurrence of earthquakes are briefly looked at and the definitions for magnitude and intensity of earthquakes are discussed. Examples of damage caused by earthquakes are given. The earthquake situation in Switzerland is looked at and the effects of earthquakes on sub-surface structures and deep-lying repositories are discussed. Finally, the ideas proposed for deep-lying geological repositories for nuclear wastes are discussed

  8. Stream-simulation experiments for waste-repository investigations

    International Nuclear Information System (INIS)

    Seitz, M.G.

    1980-01-01

    The potential for radionuclide migration by groundwater flow from a breached-water repository depends on the leaching process and on chemical changes that might occur as the radionuclide moves away from the repository. Therefore, migration involves the interactions of leached species with (1) the waste and canister, (2) the engineered barrier, and (3) the geologic materials surrounding the repository. Rather than attempt to synthesize each species and study it individually, another approach is to integrate all species and interactions using stream-simulation experiments. Interactions identified in these studies can then be investigated in detail in simpler experiments

  9. Federated repositories of X-ray diffraction images.

    Science.gov (United States)

    Androulakis, Steve; Schmidberger, Jason; Bate, Mark A; DeGori, Ross; Beitz, Anthony; Keong, Cyrus; Cameron, Bob; McGowan, Sheena; Porter, Corrine J; Harrison, Andrew; Hunter, Jane; Martin, Jennifer L; Kobe, Bostjan; Dobson, Renwick C J; Parker, Michael W; Whisstock, James C; Gray, Joan; Treloar, Andrew; Groenewegen, David; Dickson, Neil; Buckle, Ashley M

    2008-07-01

    There is a pressing need for the archiving and curation of raw X-ray diffraction data. This information is critical for validation, methods development and improvement of archived structures. However, the relatively large size of these data sets has presented challenges for storage in a single worldwide repository such as the Protein Data Bank archive. This problem can be avoided by using a federated approach, where each institution utilizes its institutional repository for storage, with a discovery service overlaid. Institutional repositories are relatively stable and adequately funded, ensuring persistence. Here, a simple repository solution is described, utilizing Fedora open-source database software and data-annotation and deposition tools that can be deployed at any site cheaply and easily. Data sets and associated metadata from federated repositories are given a unique and persistent handle, providing a simple mechanism for search and retrieval via web interfaces. In addition to ensuring that valuable data is not lost, the provision of raw data has several uses for the crystallographic community. Most importantly, structure determination can only be truly repeated or verified when the raw data are available. Moreover, the availability of raw data is extremely useful for the development of improved methods of image analysis and data processing.

  10. The function of packing materials in a high-level nuclear waste repository and some candidate materials: Salt Repository Project

    International Nuclear Information System (INIS)

    Bunnell, L.R.; Shade, J.W.

    1987-03-01

    Packing materials should be included in waste package design for a high-level nuclear waste repository in salt. A packing material barrier would increase confidence in the waste package by alleviating possible shortcomings in the present design and prolonging confinement capabilities. Packing materials have been studied for uses in other geologic repositories; appropriately chosen, they would enhance the confinement capabilities of salt repository waste packages in several ways. Benefits of packing materials include retarding or chemically modifying brines to reduce corrosion of the waste package, providing good thermal conductivity between the waste package and host rock, retarding or absorbing radionuclides, and reducing the massiveness of the waste package. These benefits are available at low percentage of total repository cost, if the packing material is properly chosen and used. Several candidate materials are being considered, including oxides, hydroxides, silicates, cement-based mixtures, and clay mixtures. 18 refs

  11. Nodal distances for rooted phylogenetic trees.

    Science.gov (United States)

    Cardona, Gabriel; Llabrés, Mercè; Rosselló, Francesc; Valiente, Gabriel

    2010-08-01

    Dissimilarity measures for (possibly weighted) phylogenetic trees based on the comparison of their vectors of path lengths between pairs of taxa, have been present in the systematics literature since the early seventies. For rooted phylogenetic trees, however, these vectors can only separate non-weighted binary trees, and therefore these dissimilarity measures are metrics only on this class of rooted phylogenetic trees. In this paper we overcome this problem, by splitting in a suitable way each path length between two taxa into two lengths. We prove that the resulting splitted path lengths matrices single out arbitrary rooted phylogenetic trees with nested taxa and arcs weighted in the set of positive real numbers. This allows the definition of metrics on this general class of rooted phylogenetic trees by comparing these matrices through metrics in spaces M(n)(R) of real-valued n x n matrices. We conclude this paper by establishing some basic facts about the metrics for non-weighted phylogenetic trees defined in this way using L(p) metrics on M(n)(R), with p [epsilon] R(>0).

  12. Representation of an open repository in groundwater flow models

    International Nuclear Information System (INIS)

    Painter, Scott; Sun, Alexander

    2005-08-01

    The effect of repository tunnels on groundwater flow has been identified as a potential issue for the nuclear waste repository being considered by SKB for a fractured granite formation in Sweden. In particular, the following pre-closure and post-closure processes have been identified as being important: inflows into open tunnels as functions of estimated grouting efficiencies, drawdown of the water table in the vicinity of the repository, upcoming of saline water, 'turnover' of surface water in the upper bedrock, and resaturation of backfilled tunnels following repository closure. The representation of repository tunnels within groundwater models is addressed in this report. The primary focus is on far-field flow that is modeled with a continuum porous medium approximation. Of particular interest are the consequences of the tunnel representation on the transient response of the groundwater system to repository operations and repository closure, as well as modeling issues such as how the water-table free surface and the coupling to near-surface hydrogeology should be handled. The overall objectives are to understand the consequences of current representations and to identify appropriate approximations for representing open tunnels in future groundwater modeling studies. The following conclusions can be drawn from the results of the simulations: 1. Two-phase flow may be induced in the vicinity of repository tunnels during repository pre-closure operations, but the formation of a two-phase flow region will not significantly affect far-field flow or inflows into tunnels. 2. The water table will be drawn down to the repository horizon and tunnel inflows will reach a steady-state value within about 5 years. 3. Steady-state inflows at the repository edge are estimated to be about 250 m 3 /year per meter of tunnel. Inflows will be greater during the transient de-watering period and less for tunnel locations closer to the repository center. 4. Significant amounts of water

  13. Representation of an open repository in groundwater flow models

    Energy Technology Data Exchange (ETDEWEB)

    Painter, Scott; Sun, Alexander [Southwest Research Inst., San Antonio, TX (United States). Center for Nuclear Waste Regulatory Analyses

    2005-08-01

    The effect of repository tunnels on groundwater flow has been identified as a potential issue for the nuclear waste repository being considered by SKB for a fractured granite formation in Sweden. In particular, the following pre-closure and post-closure processes have been identified as being important: inflows into open tunnels as functions of estimated grouting efficiencies, drawdown of the water table in the vicinity of the repository, upcoming of saline water, 'turnover' of surface water in the upper bedrock, and resaturation of backfilled tunnels following repository closure. The representation of repository tunnels within groundwater models is addressed in this report. The primary focus is on far-field flow that is modeled with a continuum porous medium approximation. Of particular interest are the consequences of the tunnel representation on the transient response of the groundwater system to repository operations and repository closure, as well as modeling issues such as how the water-table free surface and the coupling to near-surface hydrogeology should be handled. The overall objectives are to understand the consequences of current representations and to identify appropriate approximations for representing open tunnels in future groundwater modeling studies. The following conclusions can be drawn from the results of the simulations: 1. Two-phase flow may be induced in the vicinity of repository tunnels during repository pre-closure operations, but the formation of a two-phase flow region will not significantly affect far-field flow or inflows into tunnels. 2. The water table will be drawn down to the repository horizon and tunnel inflows will reach a steady-state value within about 5 years. 3. Steady-state inflows at the repository edge are estimated to be about 250 m{sup 3}/year per meter of tunnel. Inflows will be greater during the transient de-watering period and less for tunnel locations closer to the repository center. 4. Significant

  14. The industrial organization of the repository. Pitfall or logical?

    International Nuclear Information System (INIS)

    Frostenson, Magnus

    2010-11-01

    From a systems perspective the organization of the Swedish final repository project for nuclear waste is studied. Different aspects of organization are identified in the report, covering dimensions of geographical, operative, structural, responsibility and contextual organization. Following SKB's site selection for the applications for the final repository for spent nuclear system and the closing of the surplus value agreement, issues concerning operative, structural and contextual organization tend to become particularly pressing, which is reflected in three research questions: - How will the final repository project be organized operatively and structurally over time? - Why is the final repository project organized in this way by SKB? - What kind of contextual organization takes place in the final repository project and what are the consequences of these activities? How the different industrial units of the final repository project should be run and within which structure, for example concerning ownership and integration of units, is established in the report. SKB's reasons for choosing this kind of organization are also highlighted. Apart from legal and safety-related demands that must be met together with the demands of the owners, SKB's strategic preference for insourcing conditions organizational choices. The traditional task centred operative and structural organization of SKB is also reflected in the organizational choices for the present and future units of the final depository system. Contextual organization implies deepened actor relationships between SKB's owners and SKB on the one side and the municipalities Oesthammar and Oskarshamn on the other. Through active organizing, the final repository arena 'narrows down' and the final repository issue turns into an in many respects local issue. There is a clear tendency that the roles of SKB are multiplied in order to handle the demands that central stakeholders - in particular the municipalities - place on

  15. Ant-Based Phylogenetic Reconstruction (ABPR: A new distance algorithm for phylogenetic estimation based on ant colony optimization

    Directory of Open Access Journals (Sweden)

    Karla Vittori

    2008-12-01

    Full Text Available We propose a new distance algorithm for phylogenetic estimation based on Ant Colony Optimization (ACO, named Ant-Based Phylogenetic Reconstruction (ABPR. ABPR joins two taxa iteratively based on evolutionary distance among sequences, while also accounting for the quality of the phylogenetic tree built according to the total length of the tree. Similar to optimization algorithms for phylogenetic estimation, the algorithm allows exploration of a larger set of nearly optimal solutions. We applied the algorithm to four empirical data sets of mitochondrial DNA ranging from 12 to 186 sequences, and from 898 to 16,608 base pairs, and covering taxonomic levels from populations to orders. We show that ABPR performs better than the commonly used Neighbor-Joining algorithm, except when sequences are too closely related (e.g., population-level sequences. The phylogenetic relationships recovered at and above species level by ABPR agree with conventional views. However, like other algorithms of phylogenetic estimation, the proposed algorithm failed to recover expected relationships when distances are too similar or when rates of evolution are very variable, leading to the problem of long-branch attraction. ABPR, as well as other ACO-based algorithms, is emerging as a fast and accurate alternative method of phylogenetic estimation for large data sets.

  16. Transfer systems in an underground repository

    International Nuclear Information System (INIS)

    Berg, H.P.; Ehrlich, D.

    1991-01-01

    In addition to logistic problem definitions taking into account the waste types of the wastes to be disposed of and the mining conditions, transport and handling of radioactive wastes in a repository, particularly require the keeping of safety technological marginal conditions mainly resulting from the accident analyses carried out. The realization of these safety technological aspects is described taking the planned Konrad repository as an example. (author)

  17. Asset Reuse of Images from a Repository

    Science.gov (United States)

    Herman, Deirdre

    2014-01-01

    According to Markus's theory of reuse, when digital repositories are deployed to collect and distribute organizational assets, they supposedly help ensure accountability, extend information exchange, and improve productivity. Such repositories require a large investment due to the continuing costs of hardware, software, user licenses, training,…

  18. Classifying decommissioning wastes for allocation to appropriate final repositories

    International Nuclear Information System (INIS)

    Alder, J.C.; Tunaboylu, K.

    1982-01-01

    For the safe disposal of radioactive wastes in different repositories, it is of advantage to classify them in well-defined conditioned categories, appropriate for final disposal. These categories, the so-called waste sorts are characterized by similar radionuclide distribution, similar nuclide-specific activity concentrations and similar waste matrix. A methodology is presented for classifying decommissioning wastes and is applied to the decommissioning wastes arising from a Swiss program of 6 GWe. The amounts and nuclide-specific activity inventories of the decommissioning waste sorts have been estimated. A first allocation into two different repository types has been performed. Such a classification enables one to define the source parameters for repository safety analysis and allows one to allocate the different waste categories into appropriate final repositories. This work presents a first iteration to determine which waste sorts belong to which repository type. The characteristics of waste sorts have to be better defined and the protective strength of the repository barriers has to be optimized. 7 references, 2 figures, 4 tables

  19. Shaft placement in a bedded salt repository

    International Nuclear Information System (INIS)

    Klasi, M.L.

    1982-10-01

    Preferred shaft pillar sizes and shaft locations were determined with respect to the induced thermal stresses in a generic bedded salt repository at a depth of 610 m with a gross thermal loading of 14.8 W/m 2 . The model assumes isotropic material properties, plane strain and linear elastic behavior. Various shaft locations were analyzed over a 25 year period. The thermal results show that for this time span, the stratigraphy is unimportant except for the region immediately adjacent to the repository. The thermomechanical results show that for the given repository depth of 610 m, a minimum central shaft pillar radius of 244 m is required to equal the material strength in the barrier pillar. An assumed constant stress and constant temperature distribution creep model of the central shaft region adjacent to the repository conservatively overestimates a creep closure of 310 mm in a 6.1 m diameter centrally-located shaft

  20. Safety analysis of the VLJ repository

    International Nuclear Information System (INIS)

    Vieno, T.; Nordman, H.

    1991-05-01

    The VLJ repository is an underground disposal facility for the low and medium level waste generated at the Olkiluoto nuclear power plant. The repository is located within 1 km from TVO I and TVO II (2 x 710 MWe) BWR's on the Olkiluoto island at the west coast of Finland. It contains two rock silos excavated at the depth of 60...100 meters in the bedrock. Low level waste will be disposed of in a shotcreted rock silo. For bituminized medium level waste, a separate silo of reinforced concrete has been built inside the shotcreted rock silo. The post-closure safety analysis has been done for the Final Safety Analysis Report (FSAR) of the VLJ repository. In addition to the normal evolution scenario, several disturbed evolution and accident scenarios have been analysed. In the reference scenario, radio-nuclides are assumed to be released from the bituminized waste within 500 years, the concrete silo is assumed to gradually disintegrate and finally to collapse at 5 000 years, all concrete in the silo is assumed to be also chemically depleted within 6 000 years, and all the seals of the repository are assumed to deteriorate within 12 000 years. The ability of alone natural barriers to restrict the release of radionuclides into the biosphere has been evaluated by means of scenarios where the degradation of engineered barriers has been assumed to take place at a still faster rate. In one of the disturbed evolution scenarios it has been assumed that the concrete silo for medium level waste is severely impaired immediately after sealing of the repository. Effects of gas generation and consequences of human intrusion have been evaluated, too. The results of the safety analysis show that radiation doses of any significance are caused only if a well is bored in the vicinity of the repository or if the groundwater discharge spot is inhabited and used for cultivation. In the reference scenario the maximum expectation value of the individual dose rate is 0.3 mSv/a

  1. Diversion path analysis for the Swedish geological repository

    International Nuclear Information System (INIS)

    Fritzell, Anni; Meer, Klaas Van Der

    2008-02-01

    The Swedish strategy to handle the spent fuel from the nuclear power plants is direct disposal in a geological repository. The safeguards regime covering all nuclear material in the state will be expanded to cover the new repository, which will require a novel safeguards approach due mainly to the inaccessibility of the fuel after disposal. The safeguards approach must be able to provide a high level of assurance that the fuel in the repository not diverted, but must also be resource efficient. An attractive approach with regards to use of resources is to monitor only the access points to the repository, i.e. the openings. The implementation of such an approach can only be allowed if it is shown to be sufficiently secure. With the purpose of determining the applicability of this 'black box' approach, a diversion path analysis for the Swedish geological repository has been carried out. The result from the analysis shows that all credible diversion paths could be covered by the black-box safeguards approach provided that the identified boundary conditions can be met

  2. Diversion path analysis for the Swedish geological repository

    Energy Technology Data Exchange (ETDEWEB)

    Fritzell, Anni (Dept. of Physics and Astronomy, Uppsala Univ., Uppsala (Sweden)); Meer, Klaas Van Der (Belgian Nuclear Research Center SCK.CEN (BG))

    2008-02-15

    The Swedish strategy to handle the spent fuel from the nuclear power plants is direct disposal in a geological repository. The safeguards regime covering all nuclear material in the state will be expanded to cover the new repository, which will require a novel safeguards approach due mainly to the inaccessibility of the fuel after disposal. The safeguards approach must be able to provide a high level of assurance that the fuel in the repository not diverted, but must also be resource efficient. An attractive approach with regards to use of resources is to monitor only the access points to the repository, i.e. the openings. The implementation of such an approach can only be allowed if it is shown to be sufficiently secure. With the purpose of determining the applicability of this 'black box' approach, a diversion path analysis for the Swedish geological repository has been carried out. The result from the analysis shows that all credible diversion paths could be covered by the black-box safeguards approach provided that the identified boundary conditions can be met

  3. Salt Repository Project shaft design guide: Revision 0

    International Nuclear Information System (INIS)

    1987-12-01

    The Salt Repository Project (SRP) Shaft Design Guide (SDG) and the accompanying SRP Input to Seismic Design define the basic approach for developing appropriate shaft designs for a high-level nuclear waste repository in salt at a proposed site in Deaf Smith County, Texas. The SDG is based on current mining industry standards and practices enhanced to meet the special needs of an underground nuclear waste repository. It provides a common approach for design of both the exploratory and repository shafts. The SDG defines shaft lining and material concepts and presents methods for calculating the loads and displacements that will be imposed on lining structures. It also presents the methodology and formulae for sizing lining components. The SDG directs the shaft designer to sources of geoscience and seismic design data for the Deaf Smith County, Texas repository site. In addition, the SDG describes methods for confirming shaft lining design by means of computer analysis, and it discusses performance monitoring needs that must be considered in the design. 113 refs., 18 figs., 14 tabs

  4. Shared Medical Imaging Repositories.

    Science.gov (United States)

    Lebre, Rui; Bastião, Luís; Costa, Carlos

    2018-01-01

    This article describes the implementation of a solution for the integration of ownership concept and access control over medical imaging resources, making possible the centralization of multiple instances of repositories. The proposed architecture allows the association of permissions to repository resources and delegation of rights to third entities. It includes a programmatic interface for management of proposed services, made available through web services, with the ability to create, read, update and remove all components resulting from the architecture. The resulting work is a role-based access control mechanism that was integrated with Dicoogle Open-Source Project. The solution has several application scenarios like, for instance, collaborative platforms for research and tele-radiology services deployed at Cloud.

  5. Molecular and phylogenetic analysis of HIV-1 variants circulating among injecting drug users in Mashhad-Iran

    Directory of Open Access Journals (Sweden)

    Buonaguro FM

    2006-09-01

    Full Text Available Abstract Genetic and phylogenetic information on the HIV-1 epidemic in Middle-East Countries, and in particular in Iran, are extremely limited. By March 2004, the Iranian Ministry of Health officially reported a cumulative number of 6'532 HIV positive individuals and 214 AIDS cases in the Iranian HIV-1 epidemic. The intra-venous drug users (IDUs represent the group at highest risk for HIV-1 infection in Iran, accounting for almost 63% of all HIV-infected population. In this regards, a molecular phylogenetic study has been performed on a sentinel cohort of HIV-1 seropositive IDUs enrolled at the end of 2005 at the University of Mashhad, the largest city North East of Tehran. The study has been performed on both gag and env subgenomic regions amplified by Polymerase Chain Reaction (PCR from peripheral blood mononuclear cells (PBMCs and characterized by direct DNA sequence analysis. The results reported here show that the HIV-1 subtype A is circulating in this IDUs sentinel cohort. Moreover, the single phylogenetic cluster as well as the intra-group low nucleotide divergence is indicative of a recent outbreak. Unexpectedly, the Iranian samples appear to be phylogenetically derived from African Sub-Saharan subtype A viruses, raising stirring speculations on HIV-1 introduction into the IDUs epidemic in Mashhad. This sentinel study could represent the starting point for a wider molecular survey of the HIV-1 epidemics in Iran to evaluate in detail the distribution of genetic subtypes and possible natural drug-resistant variants, which are extremely helpful information to design diagnostic and therapeutic strategies.

  6. Design aspects of the alpha repository. II. Conceptual layouts of underground storage facilities

    International Nuclear Information System (INIS)

    Grams, W.H.

    1975-01-01

    Five conceptual repository layouts are presented: linear repository, 1 panel; bow tie repository, 2 panels; maltese cross repository, 4 panels; snowflake repository; 5 panels, and sash window repository, 8 panels. The layouts are compared with respect to excavation requirements, haulage distances, ventilation flow path designs, and safety features

  7. Digital Repositories and the Question of Data Usefulness

    Science.gov (United States)

    Hughes, J. S.; Downs, R. R.

    2017-12-01

    The advent of ISO standards for trustworthy long-term digital repositories provides both a set of principles to develop long-term data repositories and the instruments to assess them for trustworthiness. Such mandatory high-level requirements are broad enough to be achievable, to some extent, by many scientific data centers, archives, and other repositories. But the requirement that the data be useful in the future, the requirement that is usually considered to be most relevant to the value of the repository for its user communities, largely remains subject to various interpretations and misunderstanding. However, current and future users will be relying on repositories to preserve and disseminate the data and information needed to discover, understand, and utilize these resources to support their research, learning, and decision-making objectives. Therefore, further study is needed to determine the approaches that can be adopted by repositories to make data useful to future communities of users. This presentation will describe approaches for enabling scientific data and related information, such as software, to be useful for current and potential future user communities and will present the methodology chosen to make one science discipline's data useful for both current and future users. The method uses an ontology-based information model to define and capture the information necessary to make the data useful for contemporary and future users.

  8. Nuclear waste in a repository: amount as a factor in risk duration

    International Nuclear Information System (INIS)

    Zen, E.

    1980-01-01

    The relationship between the amount of nuclear waste in a nuclear repository and the safety of the repository is examined. It is shown that the amount of a given hazardous nuclide that is potentially leachable depends on the initial amount of waste in the repository and the time that has elapsed since the repository was put into operation. Nuclear repository safety can be enhanced if repositories are designed as modular units with leach-resistant watertight compartments

  9. On Tree-Based Phylogenetic Networks.

    Science.gov (United States)

    Zhang, Louxin

    2016-07-01

    A large class of phylogenetic networks can be obtained from trees by the addition of horizontal edges between the tree edges. These networks are called tree-based networks. We present a simple necessary and sufficient condition for tree-based networks and prove that a universal tree-based network exists for any number of taxa that contains as its base every phylogenetic tree on the same set of taxa. This answers two problems posted by Francis and Steel recently. A byproduct is a computer program for generating random binary phylogenetic networks under the uniform distribution model.

  10. Retrievability as proposed in the US repository concept

    International Nuclear Information System (INIS)

    Harrington, P.G.

    2000-01-01

    The Nuclear Waste Policy Act states that any repository shall be designed and constructed to permit retrieval. Reasons for retrieval include public health and safety, environmental concerns, and recovery of economically valuable contents of spent nuclear fuel. The Nuclear Regulatory Commission requires that waste must be retrievable at any time up to 50 years after start of emplacement. The US Department of Energy intends to maintain a retrieval capability throughout the preclosure period. Possible preclosure periods range from a minimum of 50 years to as much as 300 years. Repository closure includes sealing all accessible portions of the repository, including ventilation shafts, access ramps and boreholes. Drip shields will be installed over the waste packages. Access to the repository after closure is not intended. The proposed repository includes horizontal emplacement drifts located in the unsaturated zone. The emplacement drift centerline spacing is 81 meters to provide a subboiling region between drifts for water drainage. A drip shield covers the waste packages. All emplacement drifts remain open until closure of the repository, providing performance benefits such as removing heat and moisture during the preclosure period and lowering postclosure temperatures. This does not impede retrieval, permitting a reversal of the emplacement process to accomplish retrieval under normal conditions. The preclosure period is therefore not to enhance retrievability, but does improve performance, and the resultant extension of the retrievability capability is a secondary effect. Information must be provided from the performance confirmation program to support a regulatory decision to close. Closure would isolate the repository from the accessible environment, preclude preferential flowpaths for water into the mountain, and minimize the possibility of inadvertent intrusion. (author)

  11. Staged Repository Development Programmes

    International Nuclear Information System (INIS)

    Isaacs, T

    2003-01-01

    Programs to manage and ultimately dispose of high-level radioactive wastes are unique from scientific and technological as well as socio-political aspects. From a scientific and technological perspective, high-level radioactive wastes remain potentially hazardous for geological time periods-many millennia-and scientific and technological programs must be put in place that result in a system that provides high confidence that the wastes will be isolated from the accessible environment for these many thousands of years. Of course, ''proof'' in the classical sense is not possible at the outset, since the performance of the system can only be known with assurance, if ever, after the waste has been emplaced for those geological time periods. Adding to this challenge, many uncertainties exist in both the natural and engineered systems that are intended to isolate the wastes, and some of the uncertainties will remain regardless of the time and expense in attempting to characterize the system and assess its performance. What was perhaps underappreciated in the early days of waste management and repository program development were the unique and intense reactions that the institutional, political, and public bodies would have to repository program development, particularly in programs attempting to identify and then select sites for characterization, design, licensing, and ultimate development. Reactions in most nations were strong, focused, unrelenting, and often successful in hindering, derailing, and even stopping national repository programs. The reasons for such reactions and the measures to successfully respond to them are still evolving and continue to be the focus of many national program and political leaders. Adaptive Staging suggests an approach to repository program development that reflects the unique challenges associated with the disposal of high-level radioactive waste. The step-wise, incremental, learn-as-you-go approach is intended to maximize the

  12. Industrial complementarities between interim storage and reversible geological repository - 59237

    International Nuclear Information System (INIS)

    Hoorelbeke, Jean-Michel

    2012-01-01

    The French Act voted in 2006 made the choice of deep geological disposal as the reference option for the long term management of high level (HLW) and intermediate level long-lived waste. The CIGEO repository project aims at avoiding or limiting burden to future generations, which could not be achieved by the extension in time of interim storage. The reversibility as provided by the Act will maintain a liberty of choice for waste management on a duration which is comparable to new storage facility. Interim storage is required to accommodate waste as long as the repository is not available. The commissioning of the repository in 2025 will not suppress needs for interim storage. The paper describes the complementarities between existing and future interim storage facilities and the repository project: repository operational issues and planning, HLW thermal decay, support for the reversibility, etc. It shows opportunities to prepare a global optimization of waste management including the utilization at best of storage capacities and the planning of waste emplacement in the repository in such a way to facilitate operational conditions and to limit cost. Preliminary simulations of storage-disposal scenarios are presented. Thanks to an optimal use of the waste management system, provision can be made for a progressive increase of waste emplacement flow during the first operation phase of the repository. It is then possible to stabilize the industrial activity level of the repository site. An optimal utilization of interim storage can also limit the diversity of waste packages emplaced simultaneously, which facilitates the operation of the repository. 60 years minimum interim storage duration is generally required with respect to HLW thermal output. Extending this interim storage period may reduce the underground footprint of the repository. Regarding reversibility, the capability to manage waste packages potentially retrieved from the repository should be analyzed. The

  13. LIFE Materials: Fuel Cycle and Repository Volume 11

    Energy Technology Data Exchange (ETDEWEB)

    Shaw, H; Blink, J A

    2008-12-12

    The fusion-fission LIFE engine concept provides a path to a sustainable energy future based on safe, carbon-free nuclear power with minimal nuclear waste. The LIFE design ultimately offers many advantages over current and proposed nuclear energy technologies, and could well lead to a true worldwide nuclear energy renaissance. When compared with existing and other proposed future nuclear reactor designs, the LIFE engine exceeds alternatives in the most important measures of proliferation resistance and waste minimization. The engine needs no refueling during its lifetime. It requires no removal of fuel or fissile material generated in the LIFE engine. It leaves no weapons-attractive material at the end of life. Although there is certainly a need for additional work, all indications are that the 'back end' of the fuel cycle does not to raise any 'showstopper' issues for LIFE. Indeed, the LIFE concept has numerous benefits: (1) Per unit of electricity generated, LIFE engines would generate 20-30 times less waste (in terms of mass of heavy metal) requiring disposal in a HLW repository than does the current once-through fuel cycle. (2) Although there may be advanced fuel cycles that can compete with LIFE's low mass flow of heavy metal, all such systems require reprocessing, with attendant proliferation concerns; LIFE engines can do this without enrichment or reprocessing. Moreover, none of the advanced fuel cycles can match the low transuranic content of LIFE waste. (3) The specific thermal power of LIFE waste is initially higher than that of spent LWR fuel. Nevertheless, this higher thermal load can be managed using appropriate engineering features during an interim storage period, and could be accommodated in a Yucca-Mountain-like repository by appropriate 'staging' of the emplacement of waste packages during the operational period of the repository. The planned ventilation rates for Yucca Mountain would be sufficient for LIFE waste

  14. LIFE Materials: Fuel Cycle and Repository Volume 11

    International Nuclear Information System (INIS)

    Shaw, H.; Blink, J.A.

    2008-01-01

    The fusion-fission LIFE engine concept provides a path to a sustainable energy future based on safe, carbon-free nuclear power with minimal nuclear waste. The LIFE design ultimately offers many advantages over current and proposed nuclear energy technologies, and could well lead to a true worldwide nuclear energy renaissance. When compared with existing and other proposed future nuclear reactor designs, the LIFE engine exceeds alternatives in the most important measures of proliferation resistance and waste minimization. The engine needs no refueling during its lifetime. It requires no removal of fuel or fissile material generated in the LIFE engine. It leaves no weapons-attractive material at the end of life. Although there is certainly a need for additional work, all indications are that the 'back end' of the fuel cycle does not to raise any 'showstopper' issues for LIFE. Indeed, the LIFE concept has numerous benefits: (1) Per unit of electricity generated, LIFE engines would generate 20-30 times less waste (in terms of mass of heavy metal) requiring disposal in a HLW repository than does the current once-through fuel cycle. (2) Although there may be advanced fuel cycles that can compete with LIFE's low mass flow of heavy metal, all such systems require reprocessing, with attendant proliferation concerns; LIFE engines can do this without enrichment or reprocessing. Moreover, none of the advanced fuel cycles can match the low transuranic content of LIFE waste. (3) The specific thermal power of LIFE waste is initially higher than that of spent LWR fuel. Nevertheless, this higher thermal load can be managed using appropriate engineering features during an interim storage period, and could be accommodated in a Yucca-Mountain-like repository by appropriate 'staging' of the emplacement of waste packages during the operational period of the repository. The planned ventilation rates for Yucca Mountain would be sufficient for LIFE waste to meet the thermal constraints of

  15. Administrative Data Repository (ADR)

    Data.gov (United States)

    Department of Veterans Affairs — The Administrative Data Repository (ADR) was established to provide support for the administrative data elements relative to multiple categories of a person entity...

  16. Functional & phylogenetic diversity of copepod communities

    Science.gov (United States)

    Benedetti, F.; Ayata, S. D.; Blanco-Bercial, L.; Cornils, A.; Guilhaumon, F.

    2016-02-01

    The diversity of natural communities is classically estimated through species identification (taxonomic diversity) but can also be estimated from the ecological functions performed by the species (functional diversity), or from the phylogenetic relationships among them (phylogenetic diversity). Estimating functional diversity requires the definition of specific functional traits, i.e., phenotypic characteristics that impact fitness and are relevant to ecosystem functioning. Estimating phylogenetic diversity requires the description of phylogenetic relationships, for instance by using molecular tools. In the present study, we focused on the functional and phylogenetic diversity of copepod surface communities in the Mediterranean Sea. First, we implemented a specific trait database for the most commonly-sampled and abundant copepod species of the Mediterranean Sea. Our database includes 191 species, described by seven traits encompassing diverse ecological functions: minimal and maximal body length, trophic group, feeding type, spawning strategy, diel vertical migration and vertical habitat. Clustering analysis in the functional trait space revealed that Mediterranean copepods can be gathered into groups that have different ecological roles. Second, we reconstructed a phylogenetic tree using the available sequences of 18S rRNA. Our tree included 154 of the analyzed Mediterranean copepod species. We used these two datasets to describe the functional and phylogenetic diversity of copepod surface communities in the Mediterranean Sea. The replacement component (turn-over) and the species richness difference component (nestedness) of the beta diversity indices were identified. Finally, by comparing various and complementary aspects of plankton diversity (taxonomic, functional, and phylogenetic diversity) we were able to gain a better understanding of the relationships among the zooplankton community, biodiversity, ecosystem function, and environmental forcing.

  17. treespace: Statistical exploration of landscapes of phylogenetic trees.

    Science.gov (United States)

    Jombart, Thibaut; Kendall, Michelle; Almagro-Garcia, Jacob; Colijn, Caroline

    2017-11-01

    The increasing availability of large genomic data sets as well as the advent of Bayesian phylogenetics facilitates the investigation of phylogenetic incongruence, which can result in the impossibility of representing phylogenetic relationships using a single tree. While sometimes considered as a nuisance, phylogenetic incongruence can also reflect meaningful biological processes as well as relevant statistical uncertainty, both of which can yield valuable insights in evolutionary studies. We introduce a new tool for investigating phylogenetic incongruence through the exploration of phylogenetic tree landscapes. Our approach, implemented in the R package treespace, combines tree metrics and multivariate analysis to provide low-dimensional representations of the topological variability in a set of trees, which can be used for identifying clusters of similar trees and group-specific consensus phylogenies. treespace also provides a user-friendly web interface for interactive data analysis and is integrated alongside existing standards for phylogenetics. It fills a gap in the current phylogenetics toolbox in R and will facilitate the investigation of phylogenetic results. © 2017 The Authors. Molecular Ecology Resources Published by John Wiley & Sons Ltd.

  18. Phylogenetic diversity and relationships among species of genus ...

    African Journals Online (AJOL)

    Fifty six Nicotiana species were used to construct phylogenetic trees and to asses the genetic relationships between them. Genetic distances estimated from RAPD analysis was used to construct phylogenetic trees using Phylogenetic Inference Package (PHYLIP). Since phylogenetic relationships estimated for closely ...

  19. Investigative study of standards for Digital Repositories and related services

    NARCIS (Netherlands)

    Foulonneau, Muriel; André, Francis

    2007-01-01

    This study is meant for institutional repository managers, service providers, repository software developers and generally, all players taking an active part in the creation of the digital repository infrastructure for e-research and e-learning. It reviews the current standards, protocols and

  20. Reference Design Description for a Geologic Repository

    International Nuclear Information System (INIS)

    2000-01-01

    One of the current major national environmental problems is the safe disposal of large quantities of spent nuclear fuel and high-level radioactive waste materials, which are rapidly accumulating throughout the country. These radioactive byproducts are generated as the result of national defense activities and from the generation of electricity by commercial nuclear power plants. At present, spent nuclear fuel is accumulating at over 70 power plant sites distributed throughout 33 states. The safe disposal of these high-level radioactive materials at a central disposal facility is a high national priority. This Reference Design Description explains the current design for a potential geologic repository that may be located at Yucca Mountain in Nevada for the disposal of spent nuclear fuel and high-level radioactive waste materials. This document describes a possible design for the three fundamental parts of a repository: a surface facility, subsurface repository, and waste packaging. It also presents the current conceptual design of the key engineering systems for the final four phases of repository processes: operations, monitoring, closure, and postclosure. In accordance with current law, this design does not include an interim storage option. In addition, this Reference Design Description reviews the expected long-term performance of the potential repository. It describes the natural barrier system which, together with the engineered systems, achieves the repository objectives. This design will protect the public and the environment by allowing the safe disposal of radioactive waste received from government-owned custodial spent fuel sites, high-level radioactive waste sites, and commercial power reactor sites. All design elements meet or exceed applicable regulations governing the disposal of high-level radioactive waste. The design will provide safe disposal of waste materials for at least a 10,000 year period. During this time interval, natural radioactive decay

  1. Optimizing Resources for Trustworthiness and Scientific Impact of Domain Repositories

    Science.gov (United States)

    Lehnert, K.

    2017-12-01

    Domain repositories, i.e. data archives tied to specific scientific communities, are widely recognized and trusted by their user communities for ensuring a high level of data quality, enhancing data value, access, and reuse through a unique combination of disciplinary and digital curation expertise. Their data services are guided by the practices and values of the specific community they serve and designed to support the advancement of their science. Domain repositories need to meet user expectations for scientific utility in order to be successful, but they also need to fulfill the requirements for trustworthy repository services to be acknowledged by scientists, funders, and publishers as a reliable facility that curates and preserves data following international standards. Domain repositories therefore need to carefully plan and balance investments to optimize the scientific impact of their data services and user satisfaction on the one hand, while maintaining a reliable and robust operation of the repository infrastructure on the other hand. Staying abreast of evolving repository standards to certify as a trustworthy repository and conducting a regular self-assessment and certification alone requires resources that compete with the demands for improving data holdings or usability of systems. The Interdisciplinary Earth Data Alliance (IEDA), a data facility funded by the US National Science Foundation, operates repositories for geochemical, marine Geoscience, and Antarctic research data, while also maintaining data products (global syntheses) and data visualization and analysis tools that are of high value for the science community and have demonstrated considerable scientific impact. Balancing the investments in the growth and utility of the syntheses with resources required for certifcation of IEDA's repository services has been challenging, and a major self-assessment effort has been difficult to accommodate. IEDA is exploring a partnership model to share

  2. Long-term environmental impacts of geologic repositories

    International Nuclear Information System (INIS)

    Pigford, T.H.

    1983-05-01

    This paper summarizes a study of the long-term environmental impacts of geologic repositories for radioactive wastes. Conceptual repositories in basalt, granite, salt, and tuff were considered. Site-specific hydrological and geochemical parameters were used wherever possible, supplemented with generic parameters when necessary. Radiation doses to future maximally exposed individuals who use the contaminated groundwater and surface water were calculated and compared with a performance criterion of 10 -4 Sv/yr for radiation exposures from probable events. The major contributors to geologic isolation are the absence of groundwater if the repository is in natural salt, the slow dissolution of key radioelements as limited by solubility and by diffusion and convection in groundwater, long water travel times from the waste to the environment, and sorption retardation in the media surrounding the repository. In addition, dilution by surface water can considerably reduce the radiation exposures that result from the small fraction of the waste radioactivity that may ultimately reach the environment. Estimates of environmental impacts are made both for unreprocessed spent fuel and for reprocessing wastes. Accelerated dissolution of waste exposed to groundwater during the period of repository heating is also considered. This study of environmental impacts is a portion of a more comprehensive study of geologic waste disposal carried out by the Waste Isolation System Panel of the US National Research Council

  3. Final repository search together with the citizens. Information, consultation, dialogue, participation

    International Nuclear Information System (INIS)

    Mueller, Monika C.M.

    2013-01-01

    The documentation on the Loccum meeting 2013 includes contributions on the following topics: Public participation for the final repository search; Lessons learned from the past; Public participation: what is expected? Experiences of repository operators on public participation; The TRIPLEX concept; From Gorleben to the law on final repository search: a long and a short story; Public participation concerning radioactive waste storage; The public has to be informed on the radioactive waste problem and the possible solutions; After consensus is before consensus - German final repository conflict between legislation and simulated public participation; Political concept of public participation; A fast final repository law will not bring about social peace; Good public participation on final repository search - requirements, challenges, questions and approaches.

  4. Computational Materials Repository

    DEFF Research Database (Denmark)

    Landis, David

    , different abstraction levels and enables users to analyze their own results, and allows to share data with collaborators. The approach of the Computational Materials Repository (CMR) is to convert data to an internal format that maintains the original variable names without insisting on any semantics...

  5. Nonbinary Tree-Based Phylogenetic Networks

    NARCIS (Netherlands)

    Jetten, L.; van Iersel, L.J.J.

    2018-01-01

    Rooted phylogenetic networks are used to describe evolutionary histories that contain non-treelike evolutionary events such as hybridization and horizontal gene transfer. In some cases, such histories can be described by a phylogenetic base-tree with additional linking arcs, which can for example

  6. Geotechnical instrumentation for repository shafts

    International Nuclear Information System (INIS)

    Lentell, R.L.; Byrne, J.

    1993-01-01

    The US Congress passed the Nuclear Waste Policy Act in 1980, which required that three distinctly different geologic media be investigated as potential candidate sites for the permanent disposal of high-level nuclear waste. The three media that were selected for study were basalt (WA), salt (TX, LA, MS, UT), and tuff (NV). Preliminary Exploratory Shaft Facilities (ESF) designs were prepared for seven candidate salt sites, including bedded and domal salt environments. A bedded-salt site was selected in Deaf Smith County, TX for detailed site characterization studies and ESF Final Design. Although Congress terminated the Salt Repository Program in 1988, Final Design for the Deaf Smith ESF was completed, and much of the design rationale can be applied to subsequent deep repository shafts. This paper presents the rationale for the geotechnical instrumentation that was designed for construction and operational performance monitoring of the deep shafts of the in-situ test facility. The instrumentation design described herein can be used as a general framework in designing subsequent instrumentation programs for future high-level nuclear waste repository shafts

  7. The Belgian repository of fundamental atomic data and stellar spectra (BRASS). I. Cross-matching atomic databases of astrophysical interest

    Science.gov (United States)

    Laverick, M.; Lobel, A.; Merle, T.; Royer, P.; Martayan, C.; David, M.; Hensberge, H.; Thienpont, E.

    2018-04-01

    Context. Fundamental atomic parameters, such as oscillator strengths, play a key role in modelling and understanding the chemical composition of stars in the Universe. Despite the significant work underway to produce these parameters for many astrophysically important ions, uncertainties in these parameters remain large and can propagate throughout the entire field of astronomy. Aims: The Belgian repository of fundamental atomic data and stellar spectra (BRASS) aims to provide the largest systematic and homogeneous quality assessment of atomic data to date in terms of wavelength, atomic and stellar parameter coverage. To prepare for it, we first compiled multiple literature occurrences of many individual atomic transitions, from several atomic databases of astrophysical interest, and assessed their agreement. In a second step synthetic spectra will be compared against extremely high-quality observed spectra, for a large number of BAFGK spectral type stars, in order to critically evaluate the atomic data of a large number of important stellar lines. Methods: Several atomic repositories were searched and their data retrieved and formatted in a consistent manner. Data entries from all repositories were cross-matched against our initial BRASS atomic line list to find multiple occurrences of the same transition. Where possible we used a new non-parametric cross-match depending only on electronic configurations and total angular momentum values. We also checked for duplicate entries of the same physical transition, within each retrieved repository, using the non-parametric cross-match. Results: We report on the number of cross-matched transitions for each repository and compare their fundamental atomic parameters. We find differences in log(gf) values of up to 2 dex or more. We also find and report that 2% of our line list and Vienna atomic line database retrievals are composed of duplicate transitions. Finally we provide a number of examples of atomic spectral lines

  8. Safety case for Slovenian LILW near-surface repository

    International Nuclear Information System (INIS)

    Viršek, Sandi; Špiler, Janja; Žagar, Tomaž

    2016-01-01

    Conclusions: • Repository provides the fulfillment of international and national legal requirements regarding treatment and disposal of LILW; • Repository improves the conditions for life extension for NPP Krško and offers synergetic effects for the second unit of NPP Krško; • Repository provides a basis for safe, economic and reliable use of radioactive sources in science, medicine and industry in Slovenia; • All economic calculations and comparisons show a clear advantage in case of a joint Slovenian and Croatian solution

  9. New content in digital repositories the changing research landscape

    CERN Document Server

    Simons, Natasha

    2013-01-01

    Research institutions are under pressure to make their outputs more accessible in order to meet funding requirements and policy guidelines. Libraries have traditionally played an important role by exposing research output through a predominantly institution-based digital repository, with an emphasis on storing published works. New publishing paradigms are emerging that include research data, huge volumes of which are being generated globally. Repositories are the natural home for managing, storing and describing institutional research content. New Content in Digital Repositories explores the diversity of content types being stored in digital repositories with a focus on research data, creative works, and the interesting challenges they pose.

  10. Impact of retrievability of repository design

    International Nuclear Information System (INIS)

    Heijdra, J.J.; Gaag, J. v.d.; Prij, J.

    1995-01-01

    In this paper the impact of the retrievability on the design of the repository will be handled. Retrievability of radioactive waste from a repository in geological formations has received increasing attention during recent years. It is obvious that this retrievability will have consequences in terms of mining engineering, safety and cost. The purpose of the present study is to evaluate cost consequences by comparing two extreme options for retrievable storage. (author). 6 refs., 3 figs

  11. Chemical risks from nuclear waste repositories

    International Nuclear Information System (INIS)

    Persson, L.

    1988-01-01

    Studies concerning the chemical risks of nuclear waste are reviewed. The radiological toxicity of the material is of primary concern but the potential nonradiological toxicity should not be overlooked as the chemotoxic substances may reach the biosphere from a nuclear waste repository. In the report is concluded that the possible chemotoxic effects of a repository for nuclear waste should be studied as a part of the formal risk assessment of the disposal concept. (author)

  12. NIA Aging Cell Repository

    Data.gov (United States)

    Federal Laboratory Consortium — To facilitate aging research on cells in culture, the NIA provides support for the NIA Aging Cell Repository, located at the Coriell Institute for Medical Research...

  13. Ultrafast Approximation for Phylogenetic Bootstrap

    NARCIS (Netherlands)

    Bui Quang Minh, [No Value; Nguyen, Thi; von Haeseler, Arndt

    Nonparametric bootstrap has been a widely used tool in phylogenetic analysis to assess the clade support of phylogenetic trees. However, with the rapidly growing amount of data, this task remains a computational bottleneck. Recently, approximation methods such as the RAxML rapid bootstrap (RBS) and

  14. Repository waste-handling operations, 1998

    International Nuclear Information System (INIS)

    Cottam, A.E.; Connell, L.

    1986-04-01

    The Civilian Radioactive Waste Management Program Mission Plan and the Generic Requirements for a Mined Geologic Disposal System state that beginning in 1998, commercial spent fuel not exceeding 70,000 metric tons of heavy metal, or a quantity of solidified high-level radioactive waste resulting from the reprocessing of such a quantity of spent fuel, will be shipped to a deep geologic repository for permanent storage. The development of a waste-handling system that can process 3000 metric tons of heavy metal annually will require the adoption of a fully automated approach. The safety and minimum exposure of personnel will be the prime goals of the repository waste handling system. A man-out-of-the-loop approach will be used in all operations including the receipt of spent fuel in shipping casks, the inspection and unloading of the spent fuel into automated hot-cell facilities, the disassembly of spent fuel assemblies, the consolidation of fuel rods, and the packaging of fuel rods into heavy-walled site-specific containers. These containers are designed to contain the radionuclides for up to 1000 years. The ability of a repository to handle more than 6000 pressurized water reactor spent-fuel rods per day on a production basis for approximately a 23-year period will require that a systems approach be adopted that combines space-age technology, robotics, and sophisticated automated computerized equipment. New advanced inspection techniques, maintenance by robots, and safety will be key factors in the design, construction, and licensing of a repository waste-handling facility for 1998

  15. Distributed Web Service Repository

    Directory of Open Access Journals (Sweden)

    Piotr Nawrocki

    2015-01-01

    Full Text Available The increasing availability and popularity of computer systems has resulted in a demand for new, language- and platform-independent ways of data exchange. That demand has in turn led to a significant growth in the importance of systems based on Web services. Alongside the growing number of systems accessible via Web services came the need for specialized data repositories that could offer effective means of searching of available services. The development of mobile systems and wireless data transmission technologies has allowed the use of distributed devices and computer systems on a greater scale. The accelerating growth of distributed systems might be a good reason to consider the development of distributed Web service repositories with built-in mechanisms for data migration and synchronization.

  16. Different relationships between temporal phylogenetic turnover and phylogenetic similarity and in two forests were detected by a new null model.

    Science.gov (United States)

    Huang, Jian-Xiong; Zhang, Jian; Shen, Yong; Lian, Ju-yu; Cao, Hong-lin; Ye, Wan-hui; Wu, Lin-fang; Bin, Yue

    2014-01-01

    Ecologists have been monitoring community dynamics with the purpose of understanding the rates and causes of community change. However, there is a lack of monitoring of community dynamics from the perspective of phylogeny. We attempted to understand temporal phylogenetic turnover in a 50 ha tropical forest (Barro Colorado Island, BCI) and a 20 ha subtropical forest (Dinghushan in southern China, DHS). To obtain temporal phylogenetic turnover under random conditions, two null models were used. The first shuffled names of species that are widely used in community phylogenetic analyses. The second simulated demographic processes with careful consideration on the variation in dispersal ability among species and the variations in mortality both among species and among size classes. With the two models, we tested the relationships between temporal phylogenetic turnover and phylogenetic similarity at different spatial scales in the two forests. Results were more consistent with previous findings using the second null model suggesting that the second null model is more appropriate for our purposes. With the second null model, a significantly positive relationship was detected between phylogenetic turnover and phylogenetic similarity in BCI at a 10 m×10 m scale, potentially indicating phylogenetic density dependence. This relationship in DHS was significantly negative at three of five spatial scales. This could indicate abiotic filtering processes for community assembly. Using variation partitioning, we found phylogenetic similarity contributed to variation in temporal phylogenetic turnover in the DHS plot but not in BCI plot. The mechanisms for community assembly in BCI and DHS vary from phylogenetic perspective. Only the second null model detected this difference indicating the importance of choosing a proper null model.

  17. Ventilation planning for a prospective nuclear waste repository

    International Nuclear Information System (INIS)

    Wallace, K.G. Jr.

    1987-01-01

    In 1982, the US Congress passed the Nuclear Waste Policy Act to provide for the development of underground repositories for spent nuclear fuel. This development will be managed by the United States Department of Energy. In 1986, the President selected three areas for site characterization to determine their suitability for the development of an underground repository; those sites were: (1) A site in volcanic tuff located at Yucca Mountain in Nevada, (2) a site in bedded salt located in Deaf Smith County in Texas, and (3) a site in basalt located in Hanford, Washington. At present conceptual repository designs are being developed for each site. A key element of a repository design is the underground ventilation system required to support construction, nuclear waste emplacement, and potential waste retrieval. This paper describes the preliminary ventilation systems designed for the repository in tuff. The concept provides separate ventilation systems for the construction and waste emplacement activities. The paper further describes the means by which acceptable environmental conditions will be re-established to allow re-entry into previously closed rooms for the purpose of inspection, maintenance or retrieval

  18. Status of the implementation of Brazilian National Repository

    International Nuclear Information System (INIS)

    Tello, Cledola Cassia Oliveira de

    2015-01-01

    In Brazil, the use of nuclear energy and radioisotopes is increasing and it already justifies the construction of a national repository for radioactive wastes of low and intermediate-level. The Brazilian National Commission for Nuclear Energy (CNEN) is legally responsible for designing and constructing intermediate and final storages for radioactive wastes generated in all Country, in accordance to Federal Law No. 10308. Additionally, the Brazilian Environmental Regulator (IBAMA) lately is imposing to the implementation of new nuclear installations (e.g. Angra 3 NPP and Brazilian Multipurpose Reactor) that the National Repository should be in construction, before the start-up of those ones. In November 2009, the RBMN Project Charter was signed. The RBMN Project aims at the implantation of a National Repository to dispose the radioactive wastes of low- and intermediate-level. Some aspects about the Repository construction are very challenging, mainly due to the licensing process, which will be made for two different regulatory bodies, nuclear and environmental. The main achievements obtained till now are the establishment of the current Brazilian radioactive waste inventory, the conceptual design and the selection of candidate sites for the repository. The current status of the Project is summarized. (author)

  19. Undergraduate Students’ Difficulties in Reading and Constructing Phylogenetic Tree

    Science.gov (United States)

    Sa'adah, S.; Tapilouw, F. S.; Hidayat, T.

    2017-02-01

    Representation is a very important communication tool to communicate scientific concepts. Biologists produce phylogenetic representation to express their understanding of evolutionary relationships. The phylogenetic tree is visual representation depict a hypothesis about the evolutionary relationship and widely used in the biological sciences. Phylogenetic tree currently growing for many disciplines in biology. Consequently, learning about phylogenetic tree become an important part of biological education and an interesting area for biology education research. However, research showed many students often struggle with interpreting the information that phylogenetic trees depict. The purpose of this study was to investigate undergraduate students’ difficulties in reading and constructing a phylogenetic tree. The method of this study is a descriptive method. In this study, we used questionnaires, interviews, multiple choice and open-ended questions, reflective journals and observations. The findings showed students experiencing difficulties, especially in constructing a phylogenetic tree. The students’ responds indicated that main reasons for difficulties in constructing a phylogenetic tree are difficult to placing taxa in a phylogenetic tree based on the data provided so that the phylogenetic tree constructed does not describe the actual evolutionary relationship (incorrect relatedness). Students also have difficulties in determining the sister group, character synapomorphy, autapomorphy from data provided (character table) and comparing among phylogenetic tree. According to them building the phylogenetic tree is more difficult than reading the phylogenetic tree. Finding this studies provide information to undergraduate instructor and students to overcome learning difficulties of reading and constructing phylogenetic tree.

  20. A Repository of Semantic Open EHR Archetypes

    Directory of Open Access Journals (Sweden)

    Fernando Sánchez

    2015-03-01

    Full Text Available This paper describes a repository of openEHR archetypes that have been translated to OWL. In the work presented here, five different CKMs (Clinical Knowledge Managers have been downloaded and the archetypes have been translated to OWL. This translation is based on an existing translator that has been improved to solve programming problems with certain structures. As part of the repository a tool has been developed to keep it always up-to-date. So, any change in one of the CKMs (addition, elimination or even change of an archetype will involve translating the changed archetypes once more. The repository is accessible through a Web interface (http://www.openehr.es/.

  1. Phylogenetic structure in tropical hummingbird communities

    DEFF Research Database (Denmark)

    Graham, Catherine H; Parra, Juan L; Rahbek, Carsten

    2009-01-01

    How biotic interactions, current and historical environment, and biogeographic barriers determine community structure is a fundamental question in ecology and evolution, especially in diverse tropical regions. To evaluate patterns of local and regional diversity, we quantified the phylogenetic...... composition of 189 hummingbird communities in Ecuador. We assessed how species and phylogenetic composition changed along environmental gradients and across biogeographic barriers. We show that humid, low-elevation communities are phylogenetically overdispersed (coexistence of distant relatives), a pattern...... that is consistent with the idea that competition influences the local composition of hummingbirds. At higher elevations communities are phylogenetically clustered (coexistence of close relatives), consistent with the expectation of environmental filtering, which may result from the challenge of sustaining...

  2. Constructing phylogenetic trees using interacting pathways.

    Science.gov (United States)

    Wan, Peng; Che, Dongsheng

    2013-01-01

    Phylogenetic trees are used to represent evolutionary relationships among biological species or organisms. The construction of phylogenetic trees is based on the similarities or differences of their physical or genetic features. Traditional approaches of constructing phylogenetic trees mainly focus on physical features. The recent advancement of high-throughput technologies has led to accumulation of huge amounts of biological data, which in turn changed the way of biological studies in various aspects. In this paper, we report our approach of building phylogenetic trees using the information of interacting pathways. We have applied hierarchical clustering on two domains of organisms-eukaryotes and prokaryotes. Our preliminary results have shown the effectiveness of using the interacting pathways in revealing evolutionary relationships.

  3. Low- and intermediate-level waste repository-induced effects

    Energy Technology Data Exchange (ETDEWEB)

    Leupin, O.X.; Marschall, P.; Johnson, L.; Cloet, V.; Schneider, J. [National Cooperative for the Disposal of Radioactive Waste (NAGRA), Wettingen (Switzerland); Smith, P. [Safety Assessment Management Ltd, Henley-On-Thames, Oxfordshire (United Kingdom); Savage, D. [Savage Earth Associates Ltd, Bournemouth, Dorset (United Kingdom); Senger, R. [Intera Inc., Ennetbaden (Switzerland)

    2016-10-15

    This status report aims at describing and assessing the interactions of the radioactive waste emplaced in a low- and intermediate level waste (L/ILW) repository with the engineered materials and the Opalinus Clay host rock. The Opalinus Clay has a thickness of about 100 m in the proposed siting regions. Among other things the results are used to steer the RD and D programme of NAGRA. The repository-induced effects considered in this report are of the following broad types: - Thermal effects: i.e. effects arising principally from the heat generated by the waste and the setting of cement. - Rock-mechanical effects: i.e. effects arising from the mechanical disturbance to the rock caused by the excavation of the emplacement caverns and other underground structures. - Hydraulic and gas-related effects: i.e. the effects of repository resaturation and of gas generation, e.g. due to the corrosion of metals within the repository, on the host rock and engineered barriers. - Chemical effects: i.e. chemical interactions between the waste, the engineered materials and the host rock. Deep geological repositories are designed to avoid or mitigate the impact of potentially detrimental repository-induced effects on long-term safety. For the repository under consideration in the present report, an assessment of those repository-induced effects that remain shows that detrimental chemical and mechanical impacts are largely confined to the rock adjacent to the excavations, thermal impacts are minimal and gas effects can be mitigated by appropriate design measures to reduce gas production and provide pathways for gas transport that limit gas pressure build-up (engineered gas transport system, or EGTS). Specific measures that are part of the current reference design are discussed in relation to their significance with respect to repository-induced effects. The disposal system described in this report provides a system of passive barriers with multiple safety functions. The disposal

  4. Low- and intermediate-level waste repository-induced effects

    International Nuclear Information System (INIS)

    Leupin, O.X.; Marschall, P.; Johnson, L.; Cloet, V.; Schneider, J.; Smith, P.; Savage, D.; Senger, R.

    2016-10-01

    This status report aims at describing and assessing the interactions of the radioactive waste emplaced in a low- and intermediate level waste (L/ILW) repository with the engineered materials and the Opalinus Clay host rock. The Opalinus Clay has a thickness of about 100 m in the proposed siting regions. Among other things the results are used to steer the RD and D programme of NAGRA. The repository-induced effects considered in this report are of the following broad types: - Thermal effects: i.e. effects arising principally from the heat generated by the waste and the setting of cement. - Rock-mechanical effects: i.e. effects arising from the mechanical disturbance to the rock caused by the excavation of the emplacement caverns and other underground structures. - Hydraulic and gas-related effects: i.e. the effects of repository resaturation and of gas generation, e.g. due to the corrosion of metals within the repository, on the host rock and engineered barriers. - Chemical effects: i.e. chemical interactions between the waste, the engineered materials and the host rock. Deep geological repositories are designed to avoid or mitigate the impact of potentially detrimental repository-induced effects on long-term safety. For the repository under consideration in the present report, an assessment of those repository-induced effects that remain shows that detrimental chemical and mechanical impacts are largely confined to the rock adjacent to the excavations, thermal impacts are minimal and gas effects can be mitigated by appropriate design measures to reduce gas production and provide pathways for gas transport that limit gas pressure build-up (engineered gas transport system, or EGTS). Specific measures that are part of the current reference design are discussed in relation to their significance with respect to repository-induced effects. The disposal system described in this report provides a system of passive barriers with multiple safety functions. The disposal

  5. Making research data repositories visible: the re3data.org Registry.

    Directory of Open Access Journals (Sweden)

    Heinz Pampel

    Full Text Available Researchers require infrastructures that ensure a maximum of accessibility, stability and reliability to facilitate working with and sharing of research data. Such infrastructures are being increasingly summarized under the term Research Data Repositories (RDR. The project re3data.org-Registry of Research Data Repositories-has begun to index research data repositories in 2012 and offers researchers, funding organizations, libraries and publishers an overview of the heterogeneous research data repository landscape. In July 2013 re3data.org lists 400 research data repositories and counting. 288 of these are described in detail using the re3data.org vocabulary. Information icons help researchers to easily identify an adequate repository for the storage and reuse of their data. This article describes the heterogeneous RDR landscape and presents a typology of institutional, disciplinary, multidisciplinary and project-specific RDR. Further the article outlines the features of re3data.org, and shows how this registry helps to identify appropriate repositories for storage and search of research data.

  6. Making research data repositories visible: the re3data.org Registry.

    Science.gov (United States)

    Pampel, Heinz; Vierkant, Paul; Scholze, Frank; Bertelmann, Roland; Kindling, Maxi; Klump, Jens; Goebelbecker, Hans-Jürgen; Gundlach, Jens; Schirmbacher, Peter; Dierolf, Uwe

    2013-01-01

    Researchers require infrastructures that ensure a maximum of accessibility, stability and reliability to facilitate working with and sharing of research data. Such infrastructures are being increasingly summarized under the term Research Data Repositories (RDR). The project re3data.org-Registry of Research Data Repositories-has begun to index research data repositories in 2012 and offers researchers, funding organizations, libraries and publishers an overview of the heterogeneous research data repository landscape. In July 2013 re3data.org lists 400 research data repositories and counting. 288 of these are described in detail using the re3data.org vocabulary. Information icons help researchers to easily identify an adequate repository for the storage and reuse of their data. This article describes the heterogeneous RDR landscape and presents a typology of institutional, disciplinary, multidisciplinary and project-specific RDR. Further the article outlines the features of re3data.org, and shows how this registry helps to identify appropriate repositories for storage and search of research data.

  7. Exploring Characterizations of Learning Object Repositories Using Data Mining Techniques

    Science.gov (United States)

    Segura, Alejandra; Vidal, Christian; Menendez, Victor; Zapata, Alfredo; Prieto, Manuel

    Learning object repositories provide a platform for the sharing of Web-based educational resources. As these repositories evolve independently, it is difficult for users to have a clear picture of the kind of contents they give access to. Metadata can be used to automatically extract a characterization of these resources by using machine learning techniques. This paper presents an exploratory study carried out in the contents of four public repositories that uses clustering and association rule mining algorithms to extract characterizations of repository contents. The results of the analysis include potential relationships between different attributes of learning objects that may be useful to gain an understanding of the kind of resources available and eventually develop search mechanisms that consider repository descriptions as a criteria in federated search.

  8. Studies on an advanced repository system with enhanced engineered barriers (a framework)

    International Nuclear Information System (INIS)

    Fujiwara, A.; Tashiro, S.; Ikari, S.; Suzuki, A.

    1993-01-01

    In order to propose advanced designs of repositories with enhanced engineered barriers of relatively high radioactive wastes such as burnable poisons, channel boxes, control rods and highly irradiated metals, studies started in 1987 and completed the first phase in 1992. This paper presents the framework and brief results of the first phase. The studies set preliminary design concepts of the repositories with various combinations with engineered barriers and natural barriers for different models and locations such as a silo type in shallow land or a tunnel type in intermediate depth. Through the designs, four component technics were picked up and studied for (1) construction of the components in repository; (2) performance evaluation to realize repository design; (3) improvement of circumstances inside or around repository; and (4) surveillance of repository performance to realize the repository designs. Finally, some repository systems were provided using obtained results, and then the applicability and the economy were evaluated. The studies will continue to the second phase focusing on the long-term performance of the repositories

  9. Inferring Phylogenetic Networks Using PhyloNet.

    Science.gov (United States)

    Wen, Dingqiao; Yu, Yun; Zhu, Jiafan; Nakhleh, Luay

    2018-07-01

    PhyloNet was released in 2008 as a software package for representing and analyzing phylogenetic networks. At the time of its release, the main functionalities in PhyloNet consisted of measures for comparing network topologies and a single heuristic for reconciling gene trees with a species tree. Since then, PhyloNet has grown significantly. The software package now includes a wide array of methods for inferring phylogenetic networks from data sets of unlinked loci while accounting for both reticulation (e.g., hybridization) and incomplete lineage sorting. In particular, PhyloNet now allows for maximum parsimony, maximum likelihood, and Bayesian inference of phylogenetic networks from gene tree estimates. Furthermore, Bayesian inference directly from sequence data (sequence alignments or biallelic markers) is implemented. Maximum parsimony is based on an extension of the "minimizing deep coalescences" criterion to phylogenetic networks, whereas maximum likelihood and Bayesian inference are based on the multispecies network coalescent. All methods allow for multiple individuals per species. As computing the likelihood of a phylogenetic network is computationally hard, PhyloNet allows for evaluation and inference of networks using a pseudolikelihood measure. PhyloNet summarizes the results of the various analyzes and generates phylogenetic networks in the extended Newick format that is readily viewable by existing visualization software.

  10. Visual querying and analysis of large software repositories

    NARCIS (Netherlands)

    Voinea, Lucian; Telea, Alexandru

    We present a software framework for mining software repositories. Our extensible framework enables the integration of data extraction from repositories with data analysis and interactive visualization. We demonstrate the applicability of the framework by presenting several case studies performed on

  11. Phylogenetic classification of bony fishes.

    Science.gov (United States)

    Betancur-R, Ricardo; Wiley, Edward O; Arratia, Gloria; Acero, Arturo; Bailly, Nicolas; Miya, Masaki; Lecointre, Guillaume; Ortí, Guillermo

    2017-07-06

    Fish classifications, as those of most other taxonomic groups, are being transformed drastically as new molecular phylogenies provide support for natural groups that were unanticipated by previous studies. A brief review of the main criteria used by ichthyologists to define their classifications during the last 50 years, however, reveals slow progress towards using an explicit phylogenetic framework. Instead, the trend has been to rely, in varying degrees, on deep-rooted anatomical concepts and authority, often mixing taxa with explicit phylogenetic support with arbitrary groupings. Two leading sources in ichthyology frequently used for fish classifications (JS Nelson's volumes of Fishes of the World and W. Eschmeyer's Catalog of Fishes) fail to adopt a global phylogenetic framework despite much recent progress made towards the resolution of the fish Tree of Life. The first explicit phylogenetic classification of bony fishes was published in 2013, based on a comprehensive molecular phylogeny ( www.deepfin.org ). We here update the first version of that classification by incorporating the most recent phylogenetic results. The updated classification presented here is based on phylogenies inferred using molecular and genomic data for nearly 2000 fishes. A total of 72 orders (and 79 suborders) are recognized in this version, compared with 66 orders in version 1. The phylogeny resolves placement of 410 families, or ~80% of the total of 514 families of bony fishes currently recognized. The ordinal status of 30 percomorph families included in this study, however, remains uncertain (incertae sedis in the series Carangaria, Ovalentaria, or Eupercaria). Comments to support taxonomic decisions and comparisons with conflicting taxonomic groups proposed by others are presented. We also highlight cases were morphological support exist for the groups being classified. This version of the phylogenetic classification of bony fishes is substantially improved, providing resolution

  12. Institutional Repositories in Indian Universities and Research Institutes: A Study

    Science.gov (United States)

    Krishnamurthy, M.; Kemparaju, T. D.

    2011-01-01

    Purpose: The purpose of this paper is to report on a study of the institutional repositories (IRs) in use in Indian universities and research institutes. Design/methodology/approach: Repositories in various institutions in India were accessed and described in a standardised way. Findings: The 20 repositories studied covered collections of diverse…

  13. The Use of Digital Repositories for Enhancing Teacher Pedagogical Performance

    Science.gov (United States)

    Cohen, Anat; Kalimi, Sharon; Nachmias, Rafi

    2013-01-01

    This research examines the usage of local learning material repositories at school, as well as related teachers' attitudes and training. The study investigates the use of these repositories for enhancing teacher performance and assesses whether the assimilation of the local repositories increases their usage of and contribution to by teachers. One…

  14. Oceanographic Data Repositories: An Analysis of the International Situation

    Directory of Open Access Journals (Sweden)

    Fabiano Couto Corrêa da Silva

    2017-04-01

    Full Text Available The preservation and organization of oceanographic research data enables the scientific community to consult and reuse information of different kinds, and this is made possible by the repositories, meaning the services that facilitate data storage and dissemination. This paper reviews the current situation of oceanographic data repositories across different countries and evaluates them according to a series of indicators. The writers propose that although interest in storing and reusing oceanographic data has increased in recent years, the repositories are still in the process of developing their systems for processing, disseminating and reusing data. The repositories also differ in terms of architecture and the organizational level of the content they offer.

  15. The space of ultrametric phylogenetic trees.

    Science.gov (United States)

    Gavryushkin, Alex; Drummond, Alexei J

    2016-08-21

    The reliability of a phylogenetic inference method from genomic sequence data is ensured by its statistical consistency. Bayesian inference methods produce a sample of phylogenetic trees from the posterior distribution given sequence data. Hence the question of statistical consistency of such methods is equivalent to the consistency of the summary of the sample. More generally, statistical consistency is ensured by the tree space used to analyse the sample. In this paper, we consider two standard parameterisations of phylogenetic time-trees used in evolutionary models: inter-coalescent interval lengths and absolute times of divergence events. For each of these parameterisations we introduce a natural metric space on ultrametric phylogenetic trees. We compare the introduced spaces with existing models of tree space and formulate several formal requirements that a metric space on phylogenetic trees must possess in order to be a satisfactory space for statistical analysis, and justify them. We show that only a few known constructions of the space of phylogenetic trees satisfy these requirements. However, our results suggest that these basic requirements are not enough to distinguish between the two metric spaces we introduce and that the choice between metric spaces requires additional properties to be considered. Particularly, that the summary tree minimising the square distance to the trees from the sample might be different for different parameterisations. This suggests that further fundamental insight is needed into the problem of statistical consistency of phylogenetic inference methods. Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

  16. Microbial Influence on the Performance of Subsurface, Salt-Based Radioactive Waste Repositories. An Evaluation Based on Microbial Ecology, Bioenergetics and Projected Repository Conditions

    International Nuclear Information System (INIS)

    Swanson, J.S.; Reed, D.T.; Cherkouk, A.; Arnold, T.; Meleshyn, A.; Patterson, Russ

    2018-01-01

    For the past several decades, the Nuclear Energy Agency Salt Club has been supporting and overseeing the characterisation of rock salt as a potential host rock for deep geological repositories. This extensive evaluation of deep geological settings is aimed at determining - through a multidisciplinary approach - whether specific sites are suitable for radioactive waste disposal. Studying the microbiology of granite, basalt, tuff, and clay formations in both Europe and the United States has been an important part of this investigation, and much has been learnt about the potential influence of microorganisms on repository performance, as well as about deep subsurface microbiology in general. Some uncertainty remains, however, around the effects of microorganisms on salt-based repository performance. Using available information on the microbial ecology of hyper-saline environments, the bioenergetics of survival under high ionic strength conditions and studies related to repository microbiology, this report summarises the potential role of microorganisms in salt-based radioactive waste repositories

  17. Effects of repository conditions on environmental impact reduction by recycling

    International Nuclear Information System (INIS)

    Ahn, Joonhong

    2010-01-01

    The environmental impacts (EI) of high-level wastes (HLW) disposed of in a water-saturated repository (WSR) and in the Yucca Mountain Repository (YMR) for various fuel cycle cases have been evaluated and compared to observe the difference in the recycling effects for differing repository conditions. With the impacts of direct spent fuel disposal in each repository as the reference level, separation of actinides by Urex+ and borosilicate vitrification clearly reduces the environmental impacts of YMR, while separation by Purex and borosilicate vitrification would not necessarily reduce the environmental impact of WSR. (authors)

  18. NPP Krsko: LILW Repository or Long Term Storage

    International Nuclear Information System (INIS)

    Lokner, V.; Subasic, D.; Levanat, I.

    2008-01-01

    Construction of the facilities for LILW and SF management, as planned in Decommissioning and LILW and SF management program for NPP Krsko, would be a rather expensive and challenging project for such a small nuclear program. In order to accommodate waste arising from a single nuclear power plant, one LILW repository should be constructed before the end of the NPP operation, then one SF dry storage, and finally one geological repository. This requires relatively urgent identification within Slovenian/Croatian territory of three locations that meet the criteria for establishment of such facilities and are acceptable to the local communities. There are very few such potential locations. The siting process for the first of the three facilities is well under way in Slovenia, because the country wants to have its LILW repository in operation by the year 2013. In order to facilitate public acceptance, Slovenian government has introduced financial incentives to local communities for the repository construction and operation. These 'compensations for limited land use' may significantly increase the overall costs of disposal if the repository is in operation for a long period. In the recent years, however, a possibility of long term storage (LTS) is gaining an increased attention in the waste management community, and has already been introduced e.g. in the Netherlands. It is a particularly viable option for limited waste quantities. Disposal remains the final solution, but present technologies have made possible a relatively inexpensive storage up to about hundred years, which can accommodate LILW, HLW and SF from nuclear programs as well as research reactor waste and NORM. Such storage would be a safe and simple temporary solution, encompassing all immediate and near future waste management needs. In addition, it would increase flexibility and reduce financing requirements for the final waste disposal: providing additional time for reduction of radiation emission and heat

  19. Czech Republic. Dukovany repository

    International Nuclear Information System (INIS)

    2001-01-01

    Full text: The repository at the Dukovany site is a structure located above the land surface. It consists of two double-rows of reinforced concrete vaults. Each double-row has dimensions 38x160x6 meters and contains 2x28 vaults. The internal dimensions of each vault are 18x6x5.4 meters. The repository serves for reactor wastes from the Dukovany and Temelin nuclear power plants (NPPs). Its capacity is 55,000 m 3 or 130,000 drums. The repository is a fully engineered facility with multiple barriers. The first engineered barrier is the waste form (in the case of waste from the Dukovany NPP, the waste form is mainly bitumen, but concrete and glass are also considered as suitable solidification products). The second barrier is the container (a 200 litre steel drum or a HIC container), whereas the third consists of cut-off reinforced concrete walls with asphalt-based hydro-insulation. The fourth barrier is a cap which should protect the vaults against infiltration of rainwater and should serve also as an intrusion and erosion barrier. The fifth barrier is a drainage system around the repository which is composed of layers of gravel and sand. The void space in drums around the waste is filled with specially composed grout. Such waste packages are emplaced into the disposal vault, which is covered by pre-fabricated panels. Thereafter, joints between the panels are sealed and a provisional coverage added; the final cover, however, will be constructed only over the whole row of 28 vaults, until all vaults are filled with waste. The final cover will encompass the following components: reinforced concrete pre-fabricated panels (500 mm); cement overcoat (30 mm); insulation foil; concrete layer for cap levelling (5-150 mm); layer of asphalto-propylene concrete (150 mm); soil (450 mm); geotextile foil with topsoil (top surface vegetation). (author)

  20. phangorn: phylogenetic analysis in R.

    Science.gov (United States)

    Schliep, Klaus Peter

    2011-02-15

    phangorn is a package for phylogenetic reconstruction and analysis in the R language. Previously it was only possible to estimate phylogenetic trees with distance methods in R. phangorn, now offers the possibility of reconstructing phylogenies with distance based methods, maximum parsimony or maximum likelihood (ML) and performing Hadamard conjugation. Extending the general ML framework, this package provides the possibility of estimating mixture and partition models. Furthermore, phangorn offers several functions for comparing trees, phylogenetic models or splits, simulating character data and performing congruence analyses. phangorn can be obtained through the CRAN homepage http://cran.r-project.org/web/packages/phangorn/index.html. phangorn is licensed under GPL 2.

  1. Monitored retrievable storage (MRS) facility and salt repository integration: Engineering study report

    International Nuclear Information System (INIS)

    1987-07-01

    This MRS Facility and Salt Repository Integration Study evaluates the impacts of an integrated MRS/Salt Repository Waste Management System on the Salt Repository Surface facilities' design, operations, cost, and schedule. Eight separate cases were studied ranging from a two phase repository design with no MRS facility to a design in which the repository only received package waste from the MRS facility for emplacement. The addition of the MRS facility to the Waste Management System significantly reduced the capital cost of the salt repository. All but one of the cases studied were capable of meeting the waste acceptance data. The reduction in the size and complexity of the Salt Repository waste handling building with the integration of the MRS facility reduces the design and operating staff requirements. 7 refs., 35 figs., 43 tabs

  2. Nuclear and cpDNA sequences combined provide strong inference of higher phylogenetic relationships in the phlox family (Polemoniaceae).

    Science.gov (United States)

    Johnson, Leigh A; Chan, Lauren M; Weese, Terri L; Busby, Lisa D; McMurry, Samuel

    2008-09-01

    Members of the phlox family (Polemoniaceae) serve as useful models for studying various evolutionary and biological processes. Despite its biological importance, no family-wide phylogenetic estimate based on multiple DNA regions with complete generic sampling is available. Here, we analyze one nuclear and five chloroplast DNA sequence regions (nuclear ITS, chloroplast matK, trnL intron plus trnL-trnF intergeneric spacer, and the trnS-trnG, trnD-trnT, and psbM-trnD intergenic spacers) using parsimony and Bayesian methods, as well as assessments of congruence and long branch attraction, to explore phylogenetic relationships among 84 ingroup species representing all currently recognized Polemoniaceae genera. Relationships inferred from the ITS and concatenated chloroplast regions are similar overall. A combined analysis provides strong support for the monophyly of Polemoniaceae and subfamilies Acanthogilioideae, Cobaeoideae, and Polemonioideae. Relationships among subfamilies, and thus for the precise root of Polemoniaceae, remain poorly supported. Within the largest subfamily, Polemonioideae, four clades corresponding to tribes Polemonieae, Phlocideae, Gilieae, and Loeselieae receive strong support. The monogeneric Polemonieae appears sister to Phlocideae. Relationships within Polemonieae, Phlocideae, and Gilieae are mostly consistent between analyses and data permutations. Many relationships within Loeselieae remain uncertain. Overall, inferred phylogenetic relationships support a higher-level classification for Polemoniaceae proposed in 2000.

  3. Undergraduate Students’ Initial Ability in Understanding Phylogenetic Tree

    Science.gov (United States)

    Sa'adah, S.; Hidayat, T.; Sudargo, Fransisca

    2017-04-01

    The Phylogenetic tree is a visual representation depicts a hypothesis about the evolutionary relationship among taxa. Evolutionary experts use this representation to evaluate the evidence for evolution. The phylogenetic tree is currently growing for many disciplines in biology. Consequently, learning about the phylogenetic tree has become an important part of biological education and an interesting area of biology education research. Skill to understanding and reasoning of the phylogenetic tree, (called tree thinking) is an important skill for biology students. However, research showed many students have difficulty in interpreting, constructing, and comparing among the phylogenetic tree, as well as experiencing a misconception in the understanding of the phylogenetic tree. Students are often not taught how to reason about evolutionary relationship depicted in the diagram. Students are also not provided with information about the underlying theory and process of phylogenetic. This study aims to investigate the initial ability of undergraduate students in understanding and reasoning of the phylogenetic tree. The research method is the descriptive method. Students are given multiple choice questions and an essay that representative by tree thinking elements. Each correct answer made percentages. Each student is also given questionnaires. The results showed that the undergraduate students’ initial ability in understanding and reasoning phylogenetic tree is low. Many students are not able to answer questions about the phylogenetic tree. Only 19 % undergraduate student who answered correctly on indicator evaluate the evolutionary relationship among taxa, 25% undergraduate student who answered correctly on indicator applying concepts of the clade, 17% undergraduate student who answered correctly on indicator determines the character evolution, and only a few undergraduate student who can construct the phylogenetic tree.

  4. Improved Maximum Parsimony Models for Phylogenetic Networks.

    Science.gov (United States)

    Van Iersel, Leo; Jones, Mark; Scornavacca, Celine

    2018-05-01

    Phylogenetic networks are well suited to represent evolutionary histories comprising reticulate evolution. Several methods aiming at reconstructing explicit phylogenetic networks have been developed in the last two decades. In this article, we propose a new definition of maximum parsimony for phylogenetic networks that permits to model biological scenarios that cannot be modeled by the definitions currently present in the literature (namely, the "hardwired" and "softwired" parsimony). Building on this new definition, we provide several algorithmic results that lay the foundations for new parsimony-based methods for phylogenetic network reconstruction.

  5. Comparative analyses of plastid genomes from fourteen Cornales species: inferences for phylogenetic relationships and genome evolution.

    Science.gov (United States)

    Fu, Chao-Nan; Li, Hong-Tao; Milne, Richard; Zhang, Ting; Ma, Peng-Fei; Yang, Jing; Li, De-Zhu; Gao, Lian-Ming

    2017-12-08

    The Cornales is the basal lineage of the asterids, the largest angiosperm clade. Phylogenetic relationships within the order were previously not fully resolved. Fifteen plastid genomes representing 14 species, ten genera and seven families of Cornales were newly sequenced for comparative analyses of genome features, evolution, and phylogenomics based on different partitioning schemes and filtering strategies. All plastomes of the 14 Cornales species had the typical quadripartite structure with a genome size ranging from 156,567 bp to 158,715 bp, which included two inverted repeats (25,859-26,451 bp) separated by a large single-copy region (86,089-87,835 bp) and a small single-copy region (18,250-18,856 bp) region. These plastomes encoded the same set of 114 unique genes including 31 transfer RNA, 4 ribosomal RNA and 79 coding genes, with an identical gene order across all examined Cornales species. Two genes (rpl22 and ycf15) contained premature stop codons in seven and five species respectively. The phylogenetic relationships among all sampled species were fully resolved with maximum support. Different filtering strategies (none, light and strict) of sequence alignment did not have an effect on these relationships. The topology recovered from coding and noncoding data sets was the same as for the whole plastome, regardless of filtering strategy. Moreover, mutational hotspots and highly informative regions were identified. Phylogenetic relationships among families and intergeneric relationships within family of Cornales were well resolved. Different filtering strategies and partitioning schemes do not influence the relationships. Plastid genomes have great potential to resolve deep phylogenetic relationships of plants.

  6. Monte Carlo simulations for generic granite repository studies

    Energy Technology Data Exchange (ETDEWEB)

    Chu, Shaoping [Los Alamos National Laboratory; Lee, Joon H [SNL; Wang, Yifeng [SNL

    2010-12-08

    In a collaborative study between Los Alamos National Laboratory (LANL) and Sandia National Laboratories (SNL) for the DOE-NE Office of Fuel Cycle Technologies Used Fuel Disposition (UFD) Campaign project, we have conducted preliminary system-level analyses to support the development of a long-term strategy for geologic disposal of high-level radioactive waste. A general modeling framework consisting of a near- and a far-field submodel for a granite GDSE was developed. A representative far-field transport model for a generic granite repository was merged with an integrated systems (GoldSim) near-field model. Integrated Monte Carlo model runs with the combined near- and farfield transport models were performed, and the parameter sensitivities were evaluated for the combined system. In addition, a sub-set of radionuclides that are potentially important to repository performance were identified and evaluated for a series of model runs. The analyses were conducted with different waste inventory scenarios. Analyses were also conducted for different repository radionuelide release scenarios. While the results to date are for a generic granite repository, the work establishes the method to be used in the future to provide guidance on the development of strategy for long-term disposal of high-level radioactive waste in a granite repository.

  7. Implementing digital preservation in repositories: Knowledge and practices

    Directory of Open Access Journals (Sweden)

    Caterina Groposo Pavão

    2016-09-01

    Full Text Available Digital preservation has to be undertaken by institutional repositories, which are responsible for the preservation of the scientific output from academic institutions. However, due to the constant evolution of the field, to gain domain knowledge and recognise best practices is a complex task for people responsible for digital preservation in those institutions. Digital preservation research, practices and solutions address specific problems, such as formats, curation, reference models, authenticity, policies and preservation plans, tools, etc., while stakeholders need an integrated, contextualized and applicable overview. This paper focuses on the implementation of digital preservation in repositories, from the perspective of the team responsible for the project, regarding the necessary knowledge and best practices. Initially, it defines and contextualizes digital preservation repositories. The following section presents a conceptual model of digital preservation, synthesized from conceptual models developed in influential projects in the field, which allows us to identify the domain knowledge in digital preservation. Finally, aspects represented in the model are discussed in the light of the performance of teams implementing digital preservation repositories. It provides recommendations, guides and examples that may be useful for the implementation of digital preservation. It points to the need to strengthen the relationship between domain knowledge in digital preservation repositories with practices developed in numerous projects developed worldwide.

  8. Monitoring of geological repositories for high level radioactive waste

    International Nuclear Information System (INIS)

    2001-04-01

    Geological repositories for disposal of high level radioactive waste are designed to provide isolation of the waste from human environment for many thousands of years. This report discusses the possible purposes for monitoring geological repositories at the different stages of a repository programme, the use that may be made of the information obtained and the techniques that might be applied. This report focuses on the different objectives that monitoring might have at various stages of a programme, from the initiation of work on a candidate site, to the period after repository closure. Each objective may require somewhat different types of information, or may use the same information in different ways. Having evaluated monitoring requirements, the report concludes with a brief evaluation of available monitoring techniques

  9. Integrating repositories with fuel cycles: The airport authority model

    Energy Technology Data Exchange (ETDEWEB)

    Forsberg, C. [Massachusetts Inst. of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139-4307 (United States)

    2012-07-01

    The organization of the fuel cycle is a legacy of World War II and the cold war. Fuel cycle facilities were developed and deployed without consideration of the waste management implications. This led to the fuel cycle model of a geological repository site with a single owner, a single function (disposal), and no other facilities on site. Recent studies indicate large economic, safety, repository performance, nonproliferation, and institutional incentives to collocate and integrate all back-end facilities. Site functions could include geological disposal of spent nuclear fuel (SNF) with the option for future retrievability, disposal of other wastes, reprocessing with fuel fabrication, radioisotope production, other facilities that generate significant radioactive wastes, SNF inspection (navy and commercial), and related services such as SNF safeguards equipment testing and training. This implies a site with multiple facilities with different owners sharing some facilities and using common facilities - the repository and SNF receiving. This requires a different repository site institutional structure. We propose development of repository site authorities modeled after airport authorities. Airport authorities manage airports with government-owned runways, collocated or shared public and private airline terminals, commercial and federal military facilities, aircraft maintenance bases, and related operations - all enabled and benefiting the high-value runway asset and access to it via taxi ways. With a repository site authority the high value asset is the repository. The SNF and HLW receiving and storage facilities (equivalent to the airport terminal) serve the repository, any future reprocessing plants, and others with needs for access to SNF and other wastes. Non-public special-built roadways and on-site rail lines (equivalent to taxi ways) connect facilities. Airport authorities are typically chartered by state governments and managed by commissions with members

  10. Integrating repositories with fuel cycles: The airport authority model

    International Nuclear Information System (INIS)

    Forsberg, C.

    2012-01-01

    The organization of the fuel cycle is a legacy of World War II and the cold war. Fuel cycle facilities were developed and deployed without consideration of the waste management implications. This led to the fuel cycle model of a geological repository site with a single owner, a single function (disposal), and no other facilities on site. Recent studies indicate large economic, safety, repository performance, nonproliferation, and institutional incentives to collocate and integrate all back-end facilities. Site functions could include geological disposal of spent nuclear fuel (SNF) with the option for future retrievability, disposal of other wastes, reprocessing with fuel fabrication, radioisotope production, other facilities that generate significant radioactive wastes, SNF inspection (navy and commercial), and related services such as SNF safeguards equipment testing and training. This implies a site with multiple facilities with different owners sharing some facilities and using common facilities - the repository and SNF receiving. This requires a different repository site institutional structure. We propose development of repository site authorities modeled after airport authorities. Airport authorities manage airports with government-owned runways, collocated or shared public and private airline terminals, commercial and federal military facilities, aircraft maintenance bases, and related operations - all enabled and benefiting the high-value runway asset and access to it via taxi ways. With a repository site authority the high value asset is the repository. The SNF and HLW receiving and storage facilities (equivalent to the airport terminal) serve the repository, any future reprocessing plants, and others with needs for access to SNF and other wastes. Non-public special-built roadways and on-site rail lines (equivalent to taxi ways) connect facilities. Airport authorities are typically chartered by state governments and managed by commissions with members

  11. Overly Honest Data Repository Development

    Directory of Open Access Journals (Sweden)

    Colleen Fallaw

    2016-10-01

    Full Text Available After a year of development, the library at the University of Illinois at Urbana-Champaign has launched a repository, called the Illinois Data Bank (https://databank.illinois.edu/, to provide Illinois researchers with a free, self-serve publishing platform that centralizes, preserves, and provides persistent and reliable access to Illinois research data. This article presents a holistic view of development by discussing our overarching technical, policy, and interface strategies. By openly presenting our design decisions, the rationales behind those decisions, and associated challenges this paper aims to contribute to the library community's work to develop repository services that meet growing data preservation and sharing needs.

  12. Initial design process of the repository

    International Nuclear Information System (INIS)

    Osmanlioglu, A.E.

    2001-01-01

    The concept of the final disposal of high level wastes is to isolate the waste from the biosphere for extremely long periods of time by emplacement of wastes into deep stable geological formations. Several geological formations have been considered as candidate host environments for high level waste disposal and several techniques have been developed for repository design. In this study, interrelationships of main parameters of a general repository design have been defined and effective parameters are shown at each step. Initial design process is based on the long term stability of underground openings as disposal galleries. For this reason, this design process includes two main analyses: mechanical analysis and thermal analysis. Each of the analysis systems is directly related to each other by technical precautions. As a result of this design process, general information about the acceptable depth of the repository, layout and emplacement pattern can be taken. Final design study can be established on the result of initial design process. (author)

  13. The deep geologic repository technology programme: toward a geoscience basis for understanding repository safety

    International Nuclear Information System (INIS)

    Jensen, M.R.

    2007-01-01

    Within the Deep Geologic Repository Technology Programme (DGRTP) several Geoscience activities are focused on advancing the understanding of groundwater flow system evolution and geochemical stability in a Canadian Shield setting as affected by long-term climate change. A key aspect is developing confidence in predictions of groundwater flow patterns and residence times as they relate to the safety of a deep geologic repository for used nuclear fuel waste. This is being achieved through a coordinated multi-disciplinary approach intent on: i) demonstrating coincidence between independent geo-scientific data; ii) improving the traceability of geo-scientific data and its interpretation within a conceptual descriptive model(s); iii) improving upon methods to assess and demonstrate robustness in flow domain prediction(s) given inherent flow domain uncertainties (i.e. spatial chemical/physical property distributions, boundary conditions) in time and space; and iv) improving awareness amongst geo-scientists as to the utility of various geo-scientific data in supporting a safety case for a deep geologic repository. This multi-disciplinary DGRTP approach is yielding an improved understanding of groundwater flow system evolution and stability in Canadian Shield settings that is further contributing to the geo-scientific basis for understanding and communicating aspects of DGR safety. (author)

  14. Digital Preservation in the Context of Institutional Repositories

    Science.gov (United States)

    Hockx-Yu, Helen

    2006-01-01

    Purpose: To discuss the issues and challenges of digital preservation facing institutional repositories and to illustrate the Joint Information Systems Committee's (JISC) view on institutional repositories and its key initiatives in helping UK institutions address these issues. Design/methodology/approach: A combination of published work and JISC…

  15. General construction requirements for the deep repository in the KBS-3 system

    International Nuclear Information System (INIS)

    2002-10-01

    The KBS-3 systems includes equipment and plants for transport of spent nuclear fuels and encapsulated spent fuels, central intermediate storage, encapsulation and deep geologic disposal. The requirements in this document concern the repository and have been put together in view of the tasks of designing, constructing and building the repository. The report presents: A general review of existing design plans; Laws and regulations relevant for the design of the repository; How the regulations have been broken down to functional demands and dimensioning requirements for the repository; How the site conditions influence the design, and how the layout of the different parts of the repository interact; Relations between the functions of the repository, the safety and the design; A foundation for developing construction plans for the repository. The requirements will be collected in a database that will develop as new knowledge is collected

  16. Global thermo-mechanical effects from a KBS-3 type repository

    International Nuclear Information System (INIS)

    Hakami, E.; Olofsson, Stig-Olof

    1998-01-01

    The objective of this study has been to identify the global thermo-mechanical effects in the bedrock hosting a nuclear waste repository. Numerical thermo-mechanical modeling using distinct element models was performed. The number of fracture zones, the heat intensity of the waste, the material properties of the rock mass and the boundary conditions of the models were varied. Different models for multi-level repositories were also analyzed and compared to the main single-level case. Further, the global influence from the excavation of repository tunnels and deposition holes was examined by introducing weaker rock mass material properties in the repository region of one model. The maximum compression stress obtained for the main model is 44 MPa and occurs at the repository level after about 100 years of deposition. Due to thermal expansion, the rock mass displaces upward, and the maximum heave at the ground surface after 1000 years is calculated to be 16 cm. In the area close to the ground surface the horizontal stresses reduce, causing the rock to yield in tension down to a depth of about 80 meters. The fracture zones show opening displacements at shallow depths and closing and shearing at the repository level. The maximum displacements are 0.3-2.5 cm for closing, 0.0-0.8 cm for opening and 0.2-2.2 cm for shearing. The resultant stresses and displacements depend in large part on the assumptions made concerning the heat intensity of the waste. In the main model, an initial heat intensity of 10 W/m 2 is assumed, which gives larger effects than the case with 6 W/m 2 . Another important input parameter for the analysis is the Young's modulus of the rock mass. In the main model, a value of 30 GPa is assumed. Higher values of Young's modulus give larger thermo-mechanical effects. All multi-level repository layouts give rise to higher temperatures than the single-level layout, causing the compressive stresses to increase more at the repository level. The multi

  17. A program for verification of phylogenetic network models.

    Science.gov (United States)

    Gunawan, Andreas D M; Lu, Bingxin; Zhang, Louxin

    2016-09-01

    Genetic material is transferred in a non-reproductive manner across species more frequently than commonly thought, particularly in the bacteria kingdom. On one hand, extant genomes are thus more properly considered as a fusion product of both reproductive and non-reproductive genetic transfers. This has motivated researchers to adopt phylogenetic networks to study genome evolution. On the other hand, a gene's evolution is usually tree-like and has been studied for over half a century. Accordingly, the relationships between phylogenetic trees and networks are the basis for the reconstruction and verification of phylogenetic networks. One important problem in verifying a network model is determining whether or not certain existing phylogenetic trees are displayed in a phylogenetic network. This problem is formally called the tree containment problem. It is NP-complete even for binary phylogenetic networks. We design an exponential time but efficient method for determining whether or not a phylogenetic tree is displayed in an arbitrary phylogenetic network. It is developed on the basis of the so-called reticulation-visible property of phylogenetic networks. A C-program is available for download on http://www.math.nus.edu.sg/∼matzlx/tcp_package matzlx@nus.edu.sg Supplementary data are available at Bioinformatics online. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

  18. Underground excavation methods for a high-level waste repository

    International Nuclear Information System (INIS)

    Peshel, J.; Gupta, D.; Nataraja, M.

    1990-01-01

    This paper reports on rock excavation methods for a High-Level Waste repository that should be selected to limit the potential for creating preferential pathways for groundwater to travel to the waste packages or for radionuclides to migrate to the accessible environment. The use of water and other foreign substances should be controlled so that the repository performance is not compromised. The excavated openings should remain stable so that operations can be carried out safely and the retrievability option maintained. As per the current conceptual designs presented by the Department of Energy, the exploratory shaft facility becomes a part of the repository if the Yucca Mountain site is found suitable for repository development. Therefore, the methods of constructing the underground openings should be compatible with the performance requirements for the repository. Also, the degree of damage to the rock surrounding the openings and the extent of the damage zone should not preclude adequate site characterization. The ESf construction and operation should be compatible with the site data gathering activities, such as geological, thermomechanical, hydrological and geochemical testing

  19. Reference design description for a geologic repository. Revision 02

    International Nuclear Information System (INIS)

    1999-01-01

    This Reference Design Description explains the current design for a potential geologic repository that may be located at Yucca Mountain in Nevada. It describes the proposed design for a surface facility, subsurface repository, and waste packaging; it also presents the current design of the key engineering systems for the final four phases: operations, monitoring, closure, and postclosure. In addition, this Reference Design Description reviews the expected long-term performance of the potential repository. In accordance with current law, this design does not include an interim storage option. This document has six major sections. Section 1 describes the physical layout of the proposed repository. The second section describes the 4-phase evolution of the development of the proposed repository. Section 3 describes the reception of waste from offsite locations. The fourth section details the various systems that will package the waste and move it below ground as well as safety monitoring and closure. Section 5 describes the systems (both physical and analytical) that ensure continued safety after closure. The final section offers design options that may be adopted to increase the margin of safety

  20. Environmental effects on corrosion in the Tuff repository

    International Nuclear Information System (INIS)

    Beavers, J.A.; Thompson, N.G.

    1990-02-01

    Cortest Columbus is investigating the long-term performance of container materials used for high-level waste packages as part of the information needed by the Nuclear Regulatory Commission to assess the Department of Energy's application to construct a geologic repository for high-level radioactive waste. The scope of work consists of employing short-term techniques, to examine a wide range of possible failure modes. Long-term tests are being used to verify and further examine specific failure modes identified as important by the short-term studies. The original focus of the program was on the salt repository but the emphasis was shifted to the Tuff repository. This report summarizes the results of a literature survey performed under Task 1 of the program. The survey focuses on the influence of environmental variables on the corrosion behavior of candidate container materials for the Tuff repository. Environmental variables considered include: radiation, thermal and microbial effects. 80 refs., 44 figs., 44 tabs

  1. Future extension of the Swedish repository for low and intermediate level waste (SFR)

    International Nuclear Information System (INIS)

    Carlsson, Jan

    2006-01-01

    The existing Swedish repository for low and intermediate level waste (SFR) is licensed for disposal of short-lived waste originated from operation and maintenance of Swedish nuclear power plants. The repository is foreseen to be extended to accommodate short-lived waste from the future decommissioning of the Nuclear Power Plants. Long-lived waste from operation, maintenance and eventually decommissioning will be stored some years before disposal in a geological repository. This repository can be build either as a further extension of the SFR facility or as a separate repository. This paper discusses the strategy of a step-wise extended repository where the extensions are performed during operation of the existing parts of the repository. It describes the process for licensing new parts of the repository (and re-license of the existing parts). (author)

  2. Study of nuclear waste storage capacity at Yucca mountain repository

    International Nuclear Information System (INIS)

    Zhou Wei; Apted, M.; Kessler, J.H.

    2008-01-01

    The Yucca Mountain repository is applying license for storing 70000 MTHM nuclear waste including commercial spent nuclear fuel (CSNF) and defense high-level radioactive waste (HLW). The 70000 MTHM is a legal not the technical limit. To study the technical limit, the Electric Power Research Institute (EPRI) carried out a systematic study to explore the potential impact if the repository will accept more waste. This paper describes the model and results for evaluating the spent-fuel disposal capacity for a repository at Yucca Mountain from the thermal and hydrological point of view. Two proposed alternative repository designs are analyzed, both of which would fit into the currently well-characterized site and, therefore, not necessitating any additional site characterization at Yucca Mountain. The two- and three-dimensional models for coupled thermo-hydrological analysis extends from the surface to the water table, covering all the major and subgroup rock layers of the planned repository, as well as formations above and below the repository horizon. A dual-porosity and dual-permeability approach is used to model coupled heat and mass transfer through fracture formations. The waste package heating and ventilation are all assumed to follow those of the current design. The results show that the repository is able to accommodate three times the amount of spent fuel compared to the current design, without extra spatial expansion or exceeding current thermal and hydrological constraints. (authors)

  3. Interoperability Across the Stewardship Spectrum in the DataONE Repository Federation

    Science.gov (United States)

    Jones, M. B.; Vieglais, D.; Wilson, B. E.

    2016-12-01

    Thousands of earth and environmental science repositories serve many researchers and communities, each with their own community and legal mandates, sustainability models, and historical infrastructure. These repositories span the stewardship spectrum from highly curated collections that employ large numbers of staff members to review and improve data, to small, minimal budget repositories that accept data caveat emptor and where all responsibility for quality lies with the submitter. Each repository fills a niche, providing services that meet the stewardship tradeoffs of one or more communities. We have reviewed these stewardship tradeoffs for several DataONE member repositories ranging from minimally (KNB) to highly curated (Arctic Data Center), as well as general purpose (Dryad) to highly discipline or project specific (NEON). The rationale behind different levels of stewardship reflect resolution of these tradeoffs. Some repositories aim to encourage extensive uptake by keeping processes simple and minimizing the amount of information collected, but this limits the long-term utility of the data and the search, discovery, and integration systems that are possible. Other repositories require extensive metadata input, review, and assessment, allowing for excellent preservation, discovery, and integration but at the cost of significant time for submitters and expense for curatorial staff. DataONE recognizes these different levels of curation, and attempts to embrace them to create a federation that is useful across the stewardship spectrum. DataONE provides a tiered model for repositories with growing utility of DataONE services at higher tiers of curation. The lowest tier supports read-only access to data and requires little more than title and contact metadata. Repositories can gradually phase in support for higher levels of metadata and services as needed. These tiered capabilities are possible through flexible support for multiple metadata standards and services

  4. Repository emplacement costs for Al-clad high enriched uranium spent fuel

    International Nuclear Information System (INIS)

    McDonell, W.R.; Parks, P.B.

    1994-01-01

    A range of strategies for treatment and packaging of Al-clad high-enriched uranium (HEU) spent fuels to prevent or delay the onset of criticality in a geologic repository was evaluated in terms of the number of canisters produced and associated repository costs incurred. The results indicated that strategies in which neutron poisons were added to consolidated forms of the U-Al alloy fuel generally produced the lowest number of canisters and associated repository costs. Chemical processing whereby the HEU was removed from the waste form was also a low cost option. The repository costs generally increased for isotopic dilution strategies, because of the substantial depleted uranium added. Chemical dissolution strategies without HEU removal were also penalized because of the inert constituents in the final waste glass form. Avoiding repository criticality by limiting the fissile mass content of each canister incurred the highest repository costs

  5. Molecular phylogenetics and character evolution of morphologically diverse groups, Dendrobium section Dendrobium and allies

    Science.gov (United States)

    Takamiya, Tomoko; Wongsawad, Pheravut; Sathapattayanon, Apirada; Tajima, Natsuko; Suzuki, Shunichiro; Kitamura, Saki; Shioda, Nao; Handa, Takashi; Kitanaka, Susumu; Iijima, Hiroshi; Yukawa, Tomohisa

    2014-01-01

    It is always difficult to construct coherent classification systems for plant lineages having diverse morphological characters. The genus Dendrobium, one of the largest genera in the Orchidaceae, includes ∼1100 species, and enormous morphological diversification has hindered the establishment of consistent classification systems covering all major groups of this genus. Given the particular importance of species in Dendrobium section Dendrobium and allied groups as floriculture and crude drug genetic resources, there is an urgent need to establish a stable classification system. To clarify phylogenetic relationships in Dendrobium section Dendrobium and allied groups, we analysed the macromolecular characters of the group. Phylogenetic analyses of 210 taxa of Dendrobium were conducted on DNA sequences of internal transcribed spacer (ITS) regions of 18S–26S nuclear ribosomal DNA and the maturase-coding gene (matK) located in an intron of the plastid gene trnK using maximum parsimony and Bayesian methods. The parsimony and Bayesian analyses revealed 13 distinct clades in the group comprising section Dendrobium and its allied groups. Results also showed paraphyly or polyphyly of sections Amblyanthus, Aporum, Breviflores, Calcarifera, Crumenata, Dendrobium, Densiflora, Distichophyllae, Dolichocentrum, Holochrysa, Oxyglossum and Pedilonum. On the other hand, the monophyly of section Stachyobium was well supported. It was found that many of the morphological characters that have been believed to reflect phylogenetic relationships are, in fact, the result of convergence. As such, many of the sections that have been recognized up to this point were found to not be monophyletic, so recircumscription of sections is required. PMID:25107672

  6. Prestudy Oskarshamn. Tourism in Oskarshamn with or without a repository

    International Nuclear Information System (INIS)

    Nordblom, C.J.; Foghagen, C.

    1998-11-01

    Consequences for the tourism at Oskarshamn from siting a spent fuel repository in the community are studied. Four questionnaire/interview enquires were performed, and the analysis of the results show that no noticeable effects are expected. Still, an uncertainty about the impact of a repository is felt by the public, and more thorough information about the repository and its components is needed

  7. Establishing managerial requirements for low-and intermediate-level waste repository

    International Nuclear Information System (INIS)

    Chung, C. W.; Lee, Y. K.; Kim, H. T.; Park, W. J.; Suk, T. W.; Park, S. H.

    2004-01-01

    This paper reviews basic considerations for establishing managerial requirements on the domestic low-and intermediate-level radioactive waste repository and presents the corresponding draft requirements. The draft emphasizes their close linking with the related regulations, standards and safety assessment for the repository. It also proposes a desirable direction towards harmonizing together with the existing waste acceptance requirements for the repository

  8. Radionuclide getters in the near-field chemistry of repositories

    International Nuclear Information System (INIS)

    Holland, T.R.; Lee, D.J.

    1993-01-01

    The ultimate release of radionuclides from a radioactive waste repository will depend upon the natural and man-made barriers surrounding the site. An opportunity exists to enhance natural radionuclide retention through improved sorption, by the use of suitable additives applied to the repository backfill material. This programme of work was designed to identify problem isotopes, to search for suitable materials to enhance their retention and ultimately to provide, through experimental studies, an understanding of their effectiveness under repository conditions. (Author)

  9. Achieving public acceptance. Lessons from national repository programs

    International Nuclear Information System (INIS)

    Isaacs, Tom

    2008-01-01

    Essentially all countries pursuing nuclear waste repository programs have had long and dynamic histories. There have had changes in policies, programs, and national laws, many successes and more failures. Most continue to pursue the siting and development of geologic repositories for the ultimate disposal of the spent nuclear fuel (or reprocessed wastes) arising from the operation of nuclear power plants. And while many have had very strong repository science and technology programs, they have continued to find significant challenges associated with the societal acceptance issues required for such programs to be successful. Over recent years repository programs have developed and implemented rather different approaches to managing the non-technical (e.g. societal, political, and institutional) aspects of repository program development. This is not unexpected as programs have had different histories, operate under different laws, reside in countries with different cultures and values, and are managed under different formulations. For example, the U.S. program is implemented by a branch of the Department of Energy while in several other countries the program is managed by a separate corporation on behalf of the nuclear waste owners or dedicated quasi-governmental organizations. These similar, but different programs, and their rich histories and current work, provide an excellent opportunity to investigate features that have and have not proven successful in helping to achieve public acceptance. This paper will review some of the compelling aspects and provide some guidelines for applications in other national circumstances. Recent experiences will be evaluated to discern emerging trends for achieving public acceptance in nuclear repository development and in the broader dimensions associated with the potential renaissance of nuclear power. (author)

  10. Impact of transporting defense high-level waste to a geologic repository

    International Nuclear Information System (INIS)

    Joy, D.S.; Shappert, L.B.; Boyle, J.W.

    1984-12-01

    The Nuclear Waste Policy Act of 1982 (Public Law 97-425) provides for the development of repositories for the disposal of high-level radioactive waste and spent nuclear fuel and requires the Secretary of Energy to evaluate five potential repository sites. One factor that is to be examined is transportation of radioactive materials to such a repository and whether transportation might be affected by shipments to a defense-only repository, or to one that accepts both defense and commercial waste. In response to this requirement, The Department of Energy has undertaken an evaluation of the cost and risk associated with the potential shipments. Two waste-flow scenarios are considered which are related to the total quantity of defense high-level waste which will be placed in a repository. The low-flow case is based on a total of 6700 canisters being transported from one site, while the high-flow case assumes that a total of 20,000 canisters will be transported from three sites. For the scenarios considered, the estimated shipping costs range from $105 million to $257 million depending upon the mode of transport and the repository location. The total risks associated with shipping defense high-level waste to a repository are estimated to be significantly smaller than predicted for other transportation activities. In addition, the cost of shipping defense high-level waste to a repository does not depend on whether the site is a defense-only or a commercial repository. Therefore, the transportation considerations are not a basis for the selection of one of the two disposal options

  11. Space Telecommunications Radio System (STRS) Application Repository Design and Analysis

    Science.gov (United States)

    Handler, Louis M.

    2013-01-01

    The Space Telecommunications Radio System (STRS) Application Repository Design and Analysis document describes the STRS application repository for software-defined radio (SDR) applications intended to be compliant to the STRS Architecture Standard. The document provides information about the submission of artifacts to the STRS application repository, to provide information to the potential users of that information, and for the systems engineer to understand the requirements, concepts, and approach to the STRS application repository. The STRS application repository is intended to capture knowledge, documents, and other artifacts for each waveform application or other application outside of its project so that when the project ends, the knowledge is retained. The document describes the transmission of technology from mission to mission capturing lessons learned that are used for continuous improvement across projects and supporting NASA Procedural Requirements (NPRs) for performing software engineering projects and NASAs release process.

  12. [The subject repositories of strategy of the Open Access initiative].

    Science.gov (United States)

    Soares Guimarães, M C; da Silva, C H; Horsth Noronha, I

    2012-11-01

    The subject repositories are defined as a set of digital objects resulting from the research related to a specific disciplinary field and occupy a still restricted space in the discussion agenda of the Free Access Movement when compared to amplitude reached in the discussion of Institutional Repositories. Although the Subject Repository comes to prominence in the field, especially for the success of initiatives such as the arXiv, PubMed and E-prints, the literature on the subject is recognized as very limited. Despite its roots in the Library and Information Science, and focus on the management of disciplinary collections (subject area literature), there is little information available about the development and management of subject repositories. The following text seeks to make a brief summary on the topic as a way to present the potential to develop subject repositories in order to strengthen the initiative of open access.

  13. Rearrangement moves on rooted phylogenetic networks.

    Science.gov (United States)

    Gambette, Philippe; van Iersel, Leo; Jones, Mark; Lafond, Manuel; Pardi, Fabio; Scornavacca, Celine

    2017-08-01

    Phylogenetic tree reconstruction is usually done by local search heuristics that explore the space of the possible tree topologies via simple rearrangements of their structure. Tree rearrangement heuristics have been used in combination with practically all optimization criteria in use, from maximum likelihood and parsimony to distance-based principles, and in a Bayesian context. Their basic components are rearrangement moves that specify all possible ways of generating alternative phylogenies from a given one, and whose fundamental property is to be able to transform, by repeated application, any phylogeny into any other phylogeny. Despite their long tradition in tree-based phylogenetics, very little research has gone into studying similar rearrangement operations for phylogenetic network-that is, phylogenies explicitly representing scenarios that include reticulate events such as hybridization, horizontal gene transfer, population admixture, and recombination. To fill this gap, we propose "horizontal" moves that ensure that every network of a certain complexity can be reached from any other network of the same complexity, and "vertical" moves that ensure reachability between networks of different complexities. When applied to phylogenetic trees, our horizontal moves-named rNNI and rSPR-reduce to the best-known moves on rooted phylogenetic trees, nearest-neighbor interchange and rooted subtree pruning and regrafting. Besides a number of reachability results-separating the contributions of horizontal and vertical moves-we prove that rNNI moves are local versions of rSPR moves, and provide bounds on the sizes of the rNNI neighborhoods. The paper focuses on the most biologically meaningful versions of phylogenetic networks, where edges are oriented and reticulation events clearly identified. Moreover, our rearrangement moves are robust to the fact that networks with higher complexity usually allow a better fit with the data. Our goal is to provide a solid basis for

  14. Rearrangement moves on rooted phylogenetic networks.

    Directory of Open Access Journals (Sweden)

    Philippe Gambette

    2017-08-01

    Full Text Available Phylogenetic tree reconstruction is usually done by local search heuristics that explore the space of the possible tree topologies via simple rearrangements of their structure. Tree rearrangement heuristics have been used in combination with practically all optimization criteria in use, from maximum likelihood and parsimony to distance-based principles, and in a Bayesian context. Their basic components are rearrangement moves that specify all possible ways of generating alternative phylogenies from a given one, and whose fundamental property is to be able to transform, by repeated application, any phylogeny into any other phylogeny. Despite their long tradition in tree-based phylogenetics, very little research has gone into studying similar rearrangement operations for phylogenetic network-that is, phylogenies explicitly representing scenarios that include reticulate events such as hybridization, horizontal gene transfer, population admixture, and recombination. To fill this gap, we propose "horizontal" moves that ensure that every network of a certain complexity can be reached from any other network of the same complexity, and "vertical" moves that ensure reachability between networks of different complexities. When applied to phylogenetic trees, our horizontal moves-named rNNI and rSPR-reduce to the best-known moves on rooted phylogenetic trees, nearest-neighbor interchange and rooted subtree pruning and regrafting. Besides a number of reachability results-separating the contributions of horizontal and vertical moves-we prove that rNNI moves are local versions of rSPR moves, and provide bounds on the sizes of the rNNI neighborhoods. The paper focuses on the most biologically meaningful versions of phylogenetic networks, where edges are oriented and reticulation events clearly identified. Moreover, our rearrangement moves are robust to the fact that networks with higher complexity usually allow a better fit with the data. Our goal is to provide

  15. Phylogenetic tests of distribution patterns in South Asia: towards

    Indian Academy of Sciences (India)

    The last four decades have seen an increasing integration of phylogenetics and biogeography. However, a dearth of phylogenetic studies has precluded such biogeographic analyses in South Asia until recently. Noting the increase in phylogenetic research and interest in phylogenetic biogeography in the region, we ...

  16. Fourier transform inequalities for phylogenetic trees.

    Science.gov (United States)

    Matsen, Frederick A

    2009-01-01

    Phylogenetic invariants are not the only constraints on site-pattern frequency vectors for phylogenetic trees. A mutation matrix, by its definition, is the exponential of a matrix with non-negative off-diagonal entries; this positivity requirement implies non-trivial constraints on the site-pattern frequency vectors. We call these additional constraints "edge-parameter inequalities". In this paper, we first motivate the edge-parameter inequalities by considering a pathological site-pattern frequency vector corresponding to a quartet tree with a negative internal edge. This site-pattern frequency vector nevertheless satisfies all of the constraints described up to now in the literature. We next describe two complete sets of edge-parameter inequalities for the group-based models; these constraints are square-free monomial inequalities in the Fourier transformed coordinates. These inequalities, along with the phylogenetic invariants, form a complete description of the set of site-pattern frequency vectors corresponding to bona fide trees. Said in mathematical language, this paper explicitly presents two finite lists of inequalities in Fourier coordinates of the form "monomial < or = 1", each list characterizing the phylogenetically relevant semialgebraic subsets of the phylogenetic varieties.

  17. A conceptual frame for the development of models for the prediction of the local effects of a high level waste repository

    International Nuclear Information System (INIS)

    Palacios, Elias; Ferreri, J.C.

    1985-01-01

    Safety analyses assocciated with the elimination of radioactive wastes in rock masses assume, in all cases, the existance of wastes which will corrode the waste canisters producing the liberation of radionuclides in the rocky and their ultimate migration towards the biosphere. A conceptual discussion is presented which allows the specification to be met by the models for the prediction of the effects of the emplacement of a high level waste repository located at a depth of 500 m in a granitic rock. Furthermore, the radionuclides giving the largest contribution to the radiological impact are identified. (Author) [es

  18. Identifying Tensions in the Use of Open Licenses in OER Repositories

    Science.gov (United States)

    Amiel, Tel; Soares, Tiago Chagas

    2016-01-01

    We present an analysis of 50 repositories for educational content conducted through an "audit system" that helped us classify these repositories, their software systems, promoters, and how they communicated their licensing practices. We randomly accessed five resources from each repository to investigate the alignment of licensing…

  19. Phylogenetic search through partial tree mixing

    Science.gov (United States)

    2012-01-01

    Background Recent advances in sequencing technology have created large data sets upon which phylogenetic inference can be performed. Current research is limited by the prohibitive time necessary to perform tree search on a reasonable number of individuals. This research develops new phylogenetic algorithms that can operate on tens of thousands of species in a reasonable amount of time through several innovative search techniques. Results When compared to popular phylogenetic search algorithms, better trees are found much more quickly for large data sets. These algorithms are incorporated in the PSODA application available at http://dna.cs.byu.edu/psoda Conclusions The use of Partial Tree Mixing in a partition based tree space allows the algorithm to quickly converge on near optimal tree regions. These regions can then be searched in a methodical way to determine the overall optimal phylogenetic solution. PMID:23320449

  20. Development of an object-oriented simulation code for repository performance assessment

    International Nuclear Information System (INIS)

    Tsujimoto, Keiichi; Ahn, J.

    1999-01-01

    As understanding for mechanisms of radioactivity confinement by a deep geologic repository improves at the individual process level, it has become imperative to evaluate consequences of individual processes to the performance of the whole repository system. For this goal, the authors have developed a model for radionuclide transport in, and release from, the repository region by incorporating multiple-member decay chains and multiple waste canisters. A computer code has been developed with C++, an object-oriented language. By utilizing the feature that a geologic repository consists of thousands of objects of the same kind, such as the waste canister, the repository region is divided into multiple compartments and objects for simulation of radionuclide transport. Massive computational tasks are distributed over, and executed by, multiple networked workstations, with the help of parallel virtual machine (PVM) technology. Temporal change of the mass distribution of 28 radionuclides in the repository region for the time period of 100 million yr has been successfully obtained by the code

  1. Phylogenetic Signal in AFLP Data Sets

    NARCIS (Netherlands)

    Koopman, W.J.M.

    2005-01-01

    AFLP markers provide a potential source of phylogenetic information for molecular systematic studies. However, there are properties of restriction fragment data that limit phylogenetic interpretation of AFLPs. These are (a) possible nonindependence of fragments, (b) problems of homology assignment

  2. How does cognition evolve? Phylogenetic comparative psychology

    Science.gov (United States)

    Matthews, Luke J.; Hare, Brian A.; Nunn, Charles L.; Anderson, Rindy C.; Aureli, Filippo; Brannon, Elizabeth M.; Call, Josep; Drea, Christine M.; Emery, Nathan J.; Haun, Daniel B. M.; Herrmann, Esther; Jacobs, Lucia F.; Platt, Michael L.; Rosati, Alexandra G.; Sandel, Aaron A.; Schroepfer, Kara K.; Seed, Amanda M.; Tan, Jingzhi; van Schaik, Carel P.; Wobber, Victoria

    2014-01-01

    Now more than ever animal studies have the potential to test hypotheses regarding how cognition evolves. Comparative psychologists have developed new techniques to probe the cognitive mechanisms underlying animal behavior, and they have become increasingly skillful at adapting methodologies to test multiple species. Meanwhile, evolutionary biologists have generated quantitative approaches to investigate the phylogenetic distribution and function of phenotypic traits, including cognition. In particular, phylogenetic methods can quantitatively (1) test whether specific cognitive abilities are correlated with life history (e.g., lifespan), morphology (e.g., brain size), or socio-ecological variables (e.g., social system), (2) measure how strongly phylogenetic relatedness predicts the distribution of cognitive skills across species, and (3) estimate the ancestral state of a given cognitive trait using measures of cognitive performance from extant species. Phylogenetic methods can also be used to guide the selection of species comparisons that offer the strongest tests of a priori predictions of cognitive evolutionary hypotheses (i.e., phylogenetic targeting). Here, we explain how an integration of comparative psychology and evolutionary biology will answer a host of questions regarding the phylogenetic distribution and history of cognitive traits, as well as the evolutionary processes that drove their evolution. PMID:21927850

  3. How does cognition evolve? Phylogenetic comparative psychology.

    Science.gov (United States)

    MacLean, Evan L; Matthews, Luke J; Hare, Brian A; Nunn, Charles L; Anderson, Rindy C; Aureli, Filippo; Brannon, Elizabeth M; Call, Josep; Drea, Christine M; Emery, Nathan J; Haun, Daniel B M; Herrmann, Esther; Jacobs, Lucia F; Platt, Michael L; Rosati, Alexandra G; Sandel, Aaron A; Schroepfer, Kara K; Seed, Amanda M; Tan, Jingzhi; van Schaik, Carel P; Wobber, Victoria

    2012-03-01

    Now more than ever animal studies have the potential to test hypotheses regarding how cognition evolves. Comparative psychologists have developed new techniques to probe the cognitive mechanisms underlying animal behavior, and they have become increasingly skillful at adapting methodologies to test multiple species. Meanwhile, evolutionary biologists have generated quantitative approaches to investigate the phylogenetic distribution and function of phenotypic traits, including cognition. In particular, phylogenetic methods can quantitatively (1) test whether specific cognitive abilities are correlated with life history (e.g., lifespan), morphology (e.g., brain size), or socio-ecological variables (e.g., social system), (2) measure how strongly phylogenetic relatedness predicts the distribution of cognitive skills across species, and (3) estimate the ancestral state of a given cognitive trait using measures of cognitive performance from extant species. Phylogenetic methods can also be used to guide the selection of species comparisons that offer the strongest tests of a priori predictions of cognitive evolutionary hypotheses (i.e., phylogenetic targeting). Here, we explain how an integration of comparative psychology and evolutionary biology will answer a host of questions regarding the phylogenetic distribution and history of cognitive traits, as well as the evolutionary processes that drove their evolution.

  4. The Computational Materials Repository

    DEFF Research Database (Denmark)

    Landis, David D.; Hummelshøj, Jens S.; Nestorov, Svetlozar

    2012-01-01

    The possibilities for designing new materials based on quantum physics calculations are rapidly growing, but these design efforts lead to a significant increase in the amount of computational data created. The Computational Materials Repository (CMR) addresses this data challenge and provides...

  5. University digital repositories and authors.

    Directory of Open Access Journals (Sweden)

    Alice Keefer

    2008-02-01

    Full Text Available The Open Access movement offers two strategies for making scientific information available without economic, technical or legal obstacles: the publication of articles in OA journals and the deposit by authors of their Works in stable institutional or discipline-based repositories. This article explores the implementation of the second “route” on the part of authors, because it is the strategy that offers the greatest possibility of attaining OA in the short term. However, it does require repositories to exert great effort in informing the authors of the advantages of self-archiving and of the procedures for depositing their work and, even helping them to do so – through services and promotional activities.

  6. Construction of quality-assured infant feeding process of care data repositories: Construction of the perinatal repository (Part 2).

    Science.gov (United States)

    García-de-León-Chocano, Ricardo; Muñoz-Soler, Verónica; Sáez, Carlos; García-de-León-González, Ricardo; García-Gómez, Juan M

    2016-04-01

    This is the second in a series of two papers regarding the construction of data quality (DQ) assured repositories, based on population data from Electronic Health Records (EHR), for the reuse of information on infant feeding from birth until the age of two. This second paper describes the application of the computational process of constructing the first quality-assured repository for the reuse of information on infant feeding in the perinatal period, with the aim of studying relevant questions from the Baby Friendly Hospital Initiative (BFHI) and monitoring its deployment in our hospital. The construction of the repository was carried out using 13 semi-automated procedures to assess, recover or discard clinical data. The initial information consisted of perinatal forms from EHR related to 2048 births (Facts of Study, FoS) between 2009 and 2011, with a total of 433,308 observations of 223 variables. DQ was measured before and after the procedures using metrics related to eight quality dimensions: predictive value, correctness, duplication, consistency, completeness, contextualization, temporal-stability, and spatial-stability. Once the predictive variables were selected and DQ was assured, the final repository consisted of 1925 births, 107,529 observations and 73 quality-assured variables. The amount of discarded observations mainly corresponds to observations of non-predictive variables (52.90%) and the impact of the de-duplication process (20.58%) with respect to the total input data. Seven out of thirteen procedures achieved 100% of valid births, observations and variables. Moreover, 89% of births and ~98% of observations were consistent according to the experts׳ criteria. A multidisciplinary approach along with the quantification of DQ has allowed us to construct the first repository about infant feeding in the perinatal period based on EHR population data. Copyright © 2016 Elsevier Ltd. All rights reserved.

  7. Phylogenetic reconstruction methods: an overview.

    Science.gov (United States)

    De Bruyn, Alexandre; Martin, Darren P; Lefeuvre, Pierre

    2014-01-01

    Initially designed to infer evolutionary relationships based on morphological and physiological characters, phylogenetic reconstruction methods have greatly benefited from recent developments in molecular biology and sequencing technologies with a number of powerful methods having been developed specifically to infer phylogenies from macromolecular data. This chapter, while presenting an overview of basic concepts and methods used in phylogenetic reconstruction, is primarily intended as a simplified step-by-step guide to the construction of phylogenetic trees from nucleotide sequences using fairly up-to-date maximum likelihood methods implemented in freely available computer programs. While the analysis of chloroplast sequences from various Vanilla species is used as an illustrative example, the techniques covered here are relevant to the comparative analysis of homologous sequences datasets sampled from any group of organisms.

  8. Siting regions for deep geological repositories. Why just here?

    International Nuclear Information System (INIS)

    Rieser, A.

    2009-09-01

    This report helps to the popularization of the Nagra works accomplished for the management and disposal of the radioactive wastes in Switzerland. The programme for management and disposal of the radioactive wastes are extensively determined by regulations. Protection of mankind and environment is the primary objective. The basic storage process is considered as having been solved. The question addressed in the report is where the facility has to be built; the site selection procedure includes five steps: 1) according to their type the wastes have to be allocated to two different repositories: for low- and intermediate-level wastes (L/ILW), and for high-level and alpha-toxic wastes (HLW); 2) the safety concept for both repositories and the requirements on the geology have to be determined; 3) large suitable geological-tectonic zones must be found where repositories could be built; 4) in these geological zones a suitable host rock has to be identified; 5) the most important spatial geological conditions of the host rock (minimum depth with respect to surface erosion, maximum depth in terms of engineering requirements, lateral extent) have to be identified. Based on these criteria, three suitable siting regions for a HLW repository were found in the North of Switzerland. The preferred host rock is Opalinus clay because of its very low permeability; it is therefore an excellent barrier against nuclide transport. In the three proposed siting regions, Opalinus clay is present in sufficient volumes at a suitable depth. For a L/ILW repository six different possible siting regions were identified, five in Northern Switzerland and one in Central Switzerland. In the three siting regions found for a possible HLW repository, it would also be possible to built a combined repository for both HLW and L/ILW wastes

  9. Ground water movements around a repository. Rock mechanics analyses

    International Nuclear Information System (INIS)

    Ratigan, J.L.

    1977-09-01

    The determination and rational assessment of groundwater flow around a repository depends upon the accurate analysis of several interdependent and coupled phenomenological events occuring within the rock mass. In particular, the groundwater flow pathways (joints) are affected by the excavation and thermomechanical stresses developed within the rock mass, and the properties, of the groundwater are altered by the temperature perturbations in the rock mass. The objective of this report is to present the results of the rock mechanics analysis for the repository excavation and the thermally-induced loadings. Qualitative analysis of the significance of the rock mechanics results upon the groundwater flow is provided in this report whenever such an analysis can be performed. Non-linear rock mechanics calculations have been completed for the repository storage tunnels and the global repository domain. The rock mass has been assumed to possess orthoganol joint sets or planes of weakness with finite strength characteristics. In the local analyses of the repository storage tunnels the effects of jointorientation and repository ventilation have been examined. The local analyses indicated that storage room support requirements and regions of strength failure are highly dependent upon joint orientation. The addition of storage tunnel ventilation was noted to reduce regions of strength failure, particularly during the 30 year operational phase of the repository. Examination of the local stresses around the storage tunnels indicated the potential for perturbed hydraulic permeabilities. The permeabilities can be expected to be altered to a greater degree by the stresses resulting from excavation than from stresses which are thermally induced. The thermal loading provided by the instantaneous waste emplacement resulted in stress states and displacements quite similar to those provided by the linear waste emplacement sequence

  10. Reference design description for a geologic repository: Revision 01

    International Nuclear Information System (INIS)

    1997-09-01

    This document describes the current design expectations for a potential geologic repository that could be located at Yucca Mountain in Nevada. This Reference Design Description (RDD) looks at the surface and subsurface repository and disposal container design. Additionally, it reviews the expected long-term performance of the potential repository. In accordance with current legislation, the reference design for the potential repository does not include an interim storage option. The reference design presented allows the disposal of highly radioactive material received from government-owned spent fuel custodian sites; produces high-level waste sites, and commercial spent fuel sites. All design elements meet current federal, state, and local regulations governing the disposal of high-level radioactive waste and protection of the public and the environment. Due to the complex nature of developing a repository, the design will be created in three phases to support Viability Assessment, License Application, and construction. This document presents the current reference design. It will be updated periodically as the design progresses. Some of the details presented here may change significantly as more cost-effective solutions, technical advancements, or changes to requirements are identified

  11. The Hidden Risk Decisions in Waste Repository Regulation

    International Nuclear Information System (INIS)

    Frishman, Steve

    2001-01-01

    The move toward risk-informed, performance-based regulation of activities involving radioactive materials is becoming wide spread and broadly applied. While this approach may have some merit in specific applications in which there is a considerable body of experience, its strict application in regulation of geologic repositories for highly radioactive wastes may not be appropriate for this unproven and socially controversial technology. The U.S. Nuclear Regulatory Commission describes risk-informed, performance-based regulation as 'an approach in which risk insights, engineering analysis and judgement (eg. defense in depth), and performance history are used to (1) focus attention on the most important activities, (2) establish objective criteria based upon risk insights for evaluating performance, (3) develop measurable or calculable parameters for monitoring system and licensee performance, and (4) focus on the results as the primary basis for regulatory decision-making.' Both the risk-informed and performance-based elements of the approach are problematic when considering regulation of geologic repositories for highly radioactive wastes - an activity yet to be accomplished by any nation. In investigating potential sites for geologic repositories there will always be residual uncertainty in understanding the natural system and the events and processes that affect it. The more complex the natural system, the greater will be the uncertainty in both the data and the models used to describe the characteristics of the site's natural barriers, and the events and processes that could affect repository waste isolation. The engineered barriers also are subject to uncertainties that are important to the repository system. These uncertainties translate themselves into a range of probabilities that certain events or processes, detrimental to waste isolation, will occur. The uncertainties also translate to a range of consequences and magnitudes of consequences, should the

  12. Instrument reliability for high-level nuclear-waste-repository applications

    International Nuclear Information System (INIS)

    Rogue, F.; Binnall, E.P.; Armantrout, G.A.

    1983-01-01

    Reliable instrumentation will be needed to evaluate the characteristics of proposed high-level nuclear-wasted-repository sites and to monitor the performance of selected sites during the operational period and into repository closure. A study has been done to assess the reliability of instruments used in Department of Energy (DOE) waste repository related experiments and in other similar geological applications. The study included experiences with geotechnical, hydrological, geochemical, environmental, and radiological instrumentation and associated data acquisition equipment. Though this paper includes some findings on the reliability of instruments in each of these categories, the emphasis is on experiences with geotechnical instrumentation in hostile repository-type environments. We review the failure modes, rates, and mechanisms, along with manufacturers modifications and design changes to enhance and improve instrument performance; and include recommendations on areas where further improvements are needed

  13. Environmental assessment overview, Reference repository location, Hanford site, Washington

    International Nuclear Information System (INIS)

    1986-05-01

    In February 1983, the US Department of Energy (DOE) identified a reference repository location at the Hanford Site in Washington as one of the nine potentially acceptable sites for a mined geologic repository for spent nuclear fuel and high-level radioactive waste. The site is in the Columbia Plateau, which is one of five distinct geohydrologic settings considered for the first repository. To determine their suitability, the Hanford site and the eight other potentially acceptable sites have been evaluated in accordance with the DOE's General Guidelines for the Recommendation of Sites for the Nuclear Waste Repositories. On the basis of the evaluations reported in this EA, the DOE has found that the Hanford site is not disqualified under the guidelines. On the basis of these findings, the DOE is nominating the Hanford site as one of five sites suitable for characterization. 3 figs

  14. An open repositories network development for medical teaching resources.

    Science.gov (United States)

    Soula, Gérard; Darmoni, Stefan; Le Beux, Pierre; Renard, Jean-Marie; Dahamna, Badisse; Fieschi, Marius

    2010-01-01

    The lack of interoperability between repositories of heterogeneous and geographically widespread data is an obstacle to the diffusion, sharing and reutilization of those data. We present the development of an open repositories network taking into account both the syntactic and semantic interoperability of the different repositories and based on international standards in this field. The network is used by the medical community in France for the diffusion and sharing of digital teaching resources. The syntactic interoperability of the repositories is managed using the OAI-PMH protocol for the exchange of metadata describing the resources. Semantic interoperability is based, on one hand, on the LOM standard for the description of resources and on MESH for the indexing of the latter and, on the other hand, on semantic interoperability management designed to optimize compliance with standards and the quality of the metadata.

  15. Planning the rad waste repository - Croatian case

    International Nuclear Information System (INIS)

    Kucar Dragicevic, S.; Subasic, D.; Lokner, V.

    1996-01-01

    Radioactive waste is generated in Croatia from various nuclear applications as well as from the Krsko NPP (Slovenian and Croatian joint venture facility). The national programme on radioactive waste management is aimed at straightening existing infrastructure, establishing new (more transparent) system of responsibilities and development of new legislation. The siting of LL/ILW repository is important segments of the whole radioactive waste management cycle. The status and efficiency of the rad waste management infrastructure in the country have the significant influence on all the activities related to the project of repository construction - from the very first phases of preliminary planning and background preparations to advanced phases of the project development. The present status of the Croatian national radioactive waste infrastructure and its influence on the repository project are presented. The role of national legislation and institutional framework are specially discussed. (author)

  16. Modelling gas generation in radioactive waste repositories

    International Nuclear Information System (INIS)

    Agg, P.J.

    1993-02-01

    In a repository containing low- and intermediate-level waste, gas generation will occur principally by the coupled processes of metal corrosion and microbial degradation of cellulosic waste. This Paper describes a mathematical model design to address gas generation by these mechanisms. The metal corrosion model incorporates a three-stage process encompassing both aerobic and anaerobic corrosion regimes; the microbial degradation model simulates the activities of eight different microbial populations, which are maintained as functions both of pH and of the concentrations of particular chemical species. Gas concentrations have been measured over a period of three years in large-scale drum experiments designed to simulate repository conditions. Model predictions are confirmed against the experimental measurements, and a prediction is then made of gas concentrations and generation rates over an assessment period of one million years in a radioactive waste repository. (author)

  17. Modelling gas generation in radioactive waste repositories

    International Nuclear Information System (INIS)

    Agg, P.J.

    1992-07-01

    In a repository containing low- and intermediate-level waste, gas generation will occur principally by the coupled processes of metal corrosion and microbial degradation of cellulosic waste. This paper describes a mathematical model designed to address gas generation by these mechanisms. The metal corrosion model incorporates a three-stage process encompassing both aerobic and anaerobic corrosion regimes; the microbial degradation model simulates the activities of eight different microbial populations, which are maintained as functions both of pH and of the concentrations of particular chemical species. Gas concentrations have been measured over a period of three years in large-scale drum experiments designed to simulate repository conditions. Model predictions are confirmed against the experimental measurements, and a prediction is then made of gas concentrations and generation rates over an assessment period of one million years in a radioactive waste repository. (Author)

  18. Analysis of the seismic hazard to an underground waste repository

    International Nuclear Information System (INIS)

    Wight, L.H.

    1979-01-01

    Conclusions are: The consequence associated with intense vibratory shaking of a well-designed repository is essentially negligible. The specification of an appropriate seismic vibratory design criteria could best be accomplished with a Bayesian seismic hazard assessment, using geologic slip rates as input. The consequence associated with fault displacement is very site specific and dependent on the host geologic media and its permeability changes in response to fault displacement. The probability of faulting through a repository in its million year design life is rather high, principally because of a high probability of primary or secondary faulting on undetected faults. The faulting probability can be minimized by deploying sophisticated site certification programs. High resolution microseismic surveillance seems to be most appropriate. The author's judgement is that the repository simulation program can neglect consequences associated with shaking of the repository, but that the probability of significant fault displacement through the repository during its design life should be conservatively taken as one

  19. Developing of Radioactive Wastes Management Safety at Baldone Repository Radons

    International Nuclear Information System (INIS)

    Abramenkovs, A.; Abramenkova, G.; Klavins, M.

    2008-01-01

    The near surface radioactive wastes repository Radons near the Baldone city was put in operation in 1962. The safety assessment of repository was performed during 2000-2001 under the PHARE project to evaluate the recommended upgrades of repository. The outline design for new vaults and interim storage for long lived radioactive wastes was elaborated during 2003-2004 years. The Environmental Impact Assessment (EIA) for upgrade of Baldone repository was performed during 2004-2005 years. Additional evaluations of radioactive wastes management safety were performed during 2006 year by the experts of ENRESA, Spain. It was shown, that the additional efforts were spent for improving of radioactive wastes cementation in concrete containers. The results of tritium and Cs 137 leaching studies are presented and discussed. It was shown, that additives can significantly reduce the migration of radionuclides in ground water. The leaching coefficients for tritium and Cs 137 were determined to supply with the necessary data the risk assessment calculations for operation of Baldone repository R adons

  20. Understanding large scale groundwater flow to aid in repository siting

    International Nuclear Information System (INIS)

    Davison, C.C.; Brown, A.; Gascoyne, M.; Stevenson, D.R.; Ophori, D.U.

    1996-01-01

    Atomic Energy of Canada Limited (AECL) with support from Ontario Hydro has developed a concept for the safe disposal of Canada's nuclear fuel waste in a deep (500 to 1000 m) mined repository in plutonic rocks of the Canadian Shield. The disposal concept involves the use of multiple engineered and natural barriers to ensure long-term safety. The geosphere, comprised of the enclosing rock mass and the groundwater which occurs in cracks and pores in the rock, is expected to serve as an important natural barrier to the release and migration of wastes from the engineered repository. Although knowledge of the physical and chemical characteristics of the groundwater in the rock at potential repository sites is needed to help design the engineered barriers of the repository it can also be used to aid in repository siting, to take greater advantage of natural conditions in the geosphere to enhance its role as a barrier in the overall disposal system

  1. Nuclear waste repository in basalt: preconceptual design guidelines

    International Nuclear Information System (INIS)

    1979-06-01

    The development of the basalt waste isolation program parallels the growing need for permanent, environmentally safe, and secure means to store nuclear wastes. The repository will be located within the Columbia Plateau basalt formations where these ends can be met and radiological waste can be stored. These wastes will be stored such that the wastes may be retrieved from storage for a period after placement. After the retrieval period, the storage locations will be prepared for terminal storage. The terminal storage requirements will include decommissioning provisions. The facility boundaries will encompass no more than several square miles of land which will be above a subsurface area where the geologic makeup is primarily deep basaltic rock. The repository will receive, from an encapsulation site(s), nuclear waste in the form of canisters (not more than 18.5 feet x 16 inches in diameter) and containers (55-gallon drums). Canisters will contain spent fuel (after an interim 5-year storage period), solidified high-level wastes (HLW), or intermediate-level wastes (ILW). The containers (drums) will package the low-level transuranic wastes (LL-TRU). The storage capacity of the repository will be expanded in a time-phased program which will require that subsurface development (repository expansion) be conducted concurrently with waste storage operations. The repository will be designed to store the nuclear waste generated within the predictable future and to allow for reasonable expansion. The development and assurance of safe waste isolation is of paramount importance. All activities will be dedicated to the protection of public health and the environment. The repository will be licensed by the US Nuclear Regulatory Commission (NRC). Extensive efforts will be made to assure selection of a suitable site which will provide adequate isolation

  2. Public concerns and choices regarding nuclear-waste repositories

    International Nuclear Information System (INIS)

    Rankin, W.L.; Nealey, S.M.

    1981-06-01

    Survey research on nuclear power issues conducted in the late 1970's has determined that nuclear waste management is now considered to be one of the most important nuclear power issues both by the US public and by key leadership groups. The purpose of this research was to determine the importance placed on specific issues associated with high-level waste disposal. In addition, policy option choices were asked regarding the siting of both low-level and high-level nuclear waste repositories. A purposive sampling strategy was used to select six groups of respondents. Averaged across the six respondent groups, the leakage of liquid wastes from storage tanks was seen as the most important high-level waste issue. There was also general agreement that the issue regarding water entering the final repository and carrying radioactive wastes away was second in importance. Overall, the third most important issue was the corrosion of the metal containers used in the high-level waste repository. There was general agreement among groups that the fourth most important issue was reducing safety to cut costs. The fifth most important issue was radioactive waste transportation accidents. Overall, the issues ranked sixth and seventh were, respectively, workers' safety and earthquakes damaging the repository and releasing radioactivity. The eighth most important issue, overall, was regarding explosions in the repository from too much radioactivity, which is something that is not possible. There was general agreement across all six respondent groups that the two least important issues involved people accidentally digging into the site and the issue that the repository might cost too much and would therefore raise electricity bills. These data indicate that the concerns of nuclear waste technologists and other public groups do not always overlap

  3. Nuclear waste repository in basalt: preconceptual design guidelines

    Energy Technology Data Exchange (ETDEWEB)

    1979-06-01

    The development of the basalt waste isolation program parallels the growing need for permanent, environmentally safe, and secure means to store nuclear wastes. The repository will be located within the Columbia Plateau basalt formations where these ends can be met and radiological waste can be stored. These wastes will be stored such that the wastes may be retrieved from storage for a period after placement. After the retrieval period, the storage locations will be prepared for terminal storage. The terminal storage requirements will include decommissioning provisions. The facility boundaries will encompass no more than several square miles of land which will be above a subsurface area where the geologic makeup is primarily deep basaltic rock. The repository will receive, from an encapsulation site(s), nuclear waste in the form of canisters (not more than 18.5 feet x 16 inches in diameter) and containers (55-gallon drums). Canisters will contain spent fuel (after an interim 5-year storage period), solidified high-level wastes (HLW), or intermediate-level wastes (ILW). The containers (drums) will package the low-level transuranic wastes (LL-TRU). The storage capacity of the repository will be expanded in a time-phased program which will require that subsurface development (repository expansion) be conducted concurrently with waste storage operations. The repository will be designed to store the nuclear waste generated within the predictable future and to allow for reasonable expansion. The development and assurance of safe waste isolation is of paramount importance. All activities will be dedicated to the protection of public health and the environment. The repository will be licensed by the US Nuclear Regulatory Commission (NRC). Extensive efforts will be made to assure selection of a suitable site which will provide adequate isolation.

  4. Neural network-based retrieval from software reuse repositories

    Science.gov (United States)

    Eichmann, David A.; Srinivas, Kankanahalli

    1992-01-01

    A significant hurdle confronts the software reuser attempting to select candidate components from a software repository - discriminating between those components without resorting to inspection of the implementation(s). We outline an approach to this problem based upon neural networks which avoids requiring the repository administrators to define a conceptual closeness graph for the classification vocabulary.

  5. Report of the Task Force on the MRS/repository interface

    International Nuclear Information System (INIS)

    1986-02-01

    In April 1985, the DOE established an MRS/repository interface task force to analyze the cost and schedule impacts of implementing an integrated waste-management system on the repository and the MRS facility. The intended end products of the study were preliminary conceptual designs of repository and MRS facilities, cost and schedule estimates, and other analyses that would advance the definition of the role and function of the MRS facility, support the preparation of the MRS proposal to Congress, and serve as a source of baseline data for further studies of the integrated waste-management system. From the general overall objectives, specific equations were developed to guide the task-force effort, e.g., What would the surface facilities at the repository look like and cost with an MRS facility in the system. In order to address these questions, five scenarios were defined and analyzed. (A number of other scenarios and associated issues were also explored to a lesser extent.) These five scenarios are as follows. Scenario 1: reference case (no MRS facility). Scenario 2: MRS facility with overpacking of both spent fuel and defense high-level waste. Scenario 3: MRS facility with overpacking of spent fuel only (defense-waste overpacking at the repository). Scenario 4: MRS facility with all overpacking at the repository. Scenario 5: MRS facility with all overpacking at the repository and western fuel shipped directly to the repository. It is apparent that, with such a limited set of scenarios, determination of the optimum system was not an objective of this study. Furthermore, time constraints limited the level of detail to which facility designs could be developed; this level can best be characterized as ''preconceptual.'' These limitations are, however, compatible with the intent of the study, which was to make general comparisons between the several systems on an internally consistent basis

  6. Chemical conditions in the repository for low- and intermediate-level reactor waste

    International Nuclear Information System (INIS)

    Snellman, M.; Uotila, H.

    1984-01-01

    The chemical conditions in the proposed repositories for low- and intermediate-level reactor waste at Haestholmen (IVO) and Olkiluoto (TVO) have been discussed with respect to materials introduced into the repository, their possible long-term changes and interaction with groundwater flowing into the repository. The main possible groundwater-rock interactions have been discussed, as well as the role of micro-organisms, organic acids and colloids in the estimation of the barrier integrity. Experimental and theoretical studies have been performed on the basis of the natural groundwater compositions expected at the repository sites. Main emphasis is put on the chemical parameters which might influence the integrity of the different barriers in the repository as well as on the parameters which might effect the release and transport of radionuclides from the repository

  7. An approach to improve Romanian geological repository planning

    International Nuclear Information System (INIS)

    Andrei, Veronica; Prisecaru, Ilie

    2016-01-01

    International standards recommend typical phases to be included within any national program for the development of a geological repository dedicated to disposal of the high level radioactive wastes generated in countries using nuclear power. However, these are not universally applicable and the content of each of these phases may need to be adapted for each national situation and regulatory and institutional framework. Several national geological repository programs have faced failures in schedules and have revised their programs to consider an adapted phased management approach. The authors have observed that in the case of those countries in the early phases of a geological repository program where boundary conditions have not been fully defined, international recommendations for handling delays/failures in the national program might not immediately help. This paper considers a case study of the influences of the national context risks on the current planning schedule of the Romanian national geological repository. It proposes an optimum solution for an integrated response to any significant adverse impact arising from these risks, enabling sustainable program planning

  8. Radioactive waste disposal: Recommendations for a repository site selection

    International Nuclear Information System (INIS)

    Cadelli, N.; Orlowski, S.

    1992-01-01

    This report is a guidebook on recommendations for site selection of radioactive waste repository, based on a consensus in european community. This report describes particularly selection criteria and recommendations for radioactive waste disposal in underground or ground repositories. 14 refs

  9. Data vaults: a database welcome to scientific file repositories

    NARCIS (Netherlands)

    Ivanova, M.; Kargın, Y.; Kersten, M.; Manegold, S.; Zhang, Y.; Datcu, M.; Espinoza Molina, D.

    2013-01-01

    Efficient management and exploration of high-volume scientific file repositories have become pivotal for advancement in science. We propose to demonstrate the Data Vault, an extension of the database system architecture that transparently opens scientific file repositories for efficient in-database

  10. Thermal Analysis of a Nuclear Waste Repository in Argillite Host Rock

    Science.gov (United States)

    Hadgu, T.; Gomez, S. P.; Matteo, E. N.

    2017-12-01

    Disposal of high-level nuclear waste in a geological repository requires analysis of heat distribution as a result of decay heat. Such an analysis supports design of repository layout to define repository footprint as well as provide information of importance to overall design. The analysis is also used in the study of potential migration of radionuclides to the accessible environment. In this study, thermal analysis for high-level waste and spent nuclear fuel in a generic repository in argillite host rock is presented. The thermal analysis utilized both semi-analytical and numerical modeling in the near field of a repository. The semi-analytical method looks at heat transport by conduction in the repository and surroundings. The results of the simulation method are temperature histories at selected radial distances from the waste package. A 3-D thermal-hydrologic numerical model was also conducted to study fluid and heat distribution in the near field. The thermal analysis assumed a generic geological repository at 500 m depth. For the semi-analytical method, a backfilled closed repository was assumed with basic design and material properties. For the thermal-hydrologic numerical method, a repository layout with disposal in horizontal boreholes was assumed. The 3-D modeling domain covers a limited portion of the repository footprint to enable a detailed thermal analysis. A highly refined unstructured mesh was used with increased discretization near heat sources and at intersections of different materials. All simulations considered different parameter values for properties of components of the engineered barrier system (i.e. buffer, disturbed rock zone and the host rock), and different surface storage times. Results of the different modeling cases are presented and include temperature and fluid flow profiles in the near field at different simulation times. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology and

  11. From the repository to the deep geological repository - and back to the Terrain surface?

    International Nuclear Information System (INIS)

    Lahodynsky, R.

    2011-01-01

    How deep is 'safe'? How long is long-term? How and for how long will something be isolated? Which rock, which formation and which location are suitable? A repository constructed for the safekeeping of radioactive or highly toxic wastes can be erected either on the surface, near the surface or underground. Radioactive waste is currently often stored at near-surface locations. The storage usually takes place nearby of a nuclear power plant in pits or concrete tombs (vaults). However, repositories can also be found in restricted areas, e.g. near nuclear weapon production or reprocessing plants (WAA) or nuclear weapons test sites (including Tomsk, Russia, Hanford and Nevada desert, USA), or in extremely low rainfall regions (South Africa). In addition there are disused mines which are now used as underground repositories. Low-level and medium-active (SMA) but also high-level waste (HAA) are stored at these types of sites (NPP, WAA, test areas, former mines). In Russia (Tomsk, Siberia) liquid radioactive waste has been injected into deep geological formations for some time (Minatom, 2001). However, all these locations are not the result of a systematic, scientific search or a holistic process for finding a location, but the result of political decisions, sometimes ignoring scientific findings. Why underground storage is given preference over high-security landfill sites (HSD) often has economic reasons. While a low safety standard can significantly reduce the cost of an above-ground high-security landfill as a waste disposal depot, spending remains high, especially due to the need for capital formation to cover operating expenses after filling the HSD. In the case of underground storage, on the other hand, no additional expenses are required for the period after backfilling. The assumption of lower costs for a deep repository runs through the past decades and coincides with the assumption that the desired ideal underground conditions actually exist and will

  12. Region-to-area screening methodology for the crystalline repository project

    International Nuclear Information System (INIS)

    1984-08-01

    The ''Nuclear Waste Policy Act of 1982'' (NWPA), enacted January 7, 1983 as Public Law 97-425, confirmed the responsibility of the US Department of Energy (DOE) for management of high-level radioactive waste. The NWPA directed the DOE to provide safe facilities for isolation of high-level radioactive waste from the environment in federally owned and federally licensed repositories. To achieve the goals of providing licensed repositories for high-level radioactive waste, a technical program has been developed by the DOE to meet all relevant radiological protection criteria and other requirements. By March 1987, the NWPA requires the DOE to recommend to the President a single site, chosen from five nominated sites for construction of the first repository. Rock types being considered as potential hosts for the first repository include salt, basalt, and tuff. The NWPA also requires the DOE to select three candidate sites, chosen from five nominated sites to be recommended to the President by July 1989, as possible locations for the second repository. Potential host rock types for the second federal repository will include crystalline rock. This document outlines the methodology for region-to-area screening of exposed crystalline rock bodies for suitability as sites for further study. 17 refs., 14 figs., 2 tabs

  13. Acceptability of a low and intermediate level radioactive waste repository

    International Nuclear Information System (INIS)

    Zeleznik, N.; Polic, M.

    2000-01-01

    Siting of a radioactive waste repository, even for the waste of low and intermediate level (LILW) radioactivity, presents a great problem in almost every country that produces such waste. The main problem is not a technical one, but socio-psychological, namely the acceptability of this kind of repository. In general, people are opposed to any such kind of facility in their vicinity (NIMBY). In this study we try to establish the factors that influence people's behavior regarding the construction of a radioactive waste repository in their local community, with the use of Ajzen's model of planned behavior. Two different scenarios about the construction of a radioactive waste repository in their community, together with a set of questions were presented to participants from different schools. Data from the survey were analysed by multivariate methods, and a model of relevant behaviour was proposed. From the results it can be seen that different approaches to local community participation in site selection process slightly influence people's attitudes towards the LILW repository, while significant differences in answers were found in the responses which depend on participants' knowledge. Therefore the RAO Agency will further intensify preparation of the relevant communication plan and start with its implementation to support LILW repository site selection process, which will also include educational programme. (author)

  14. Training Librarians for 21st Century Repository Services: Emerging Trends

    Directory of Open Access Journals (Sweden)

    Helen Emasealu

    2016-05-01

    Full Text Available The paper reviewed the emerging roles of the 21st century librarians, charged with the responsibility to manage repository services across libraries in present-day information technology environment. Librarians need to be trained and empowered with requisite skills and knowledge needed for successful management of the ICT driven repository initiatives that the 21st century demands. Literature was reviewed on the roles and responsibilities of librarians, training needs and opportunities, career path and recruitment of librarians, and community support necessary for effective and efficient implementation and management of repository initiatives. This entails the ability to comprehend trends and change patterns which are essential for providing research focused and user-friendly models in open repository services that are based on thorough analytical understanding of the challenges of emerging trends. To achieve this requires the training and retraining of librarians to reposition them as information specialists in their career path. The role of the library as an integral part of its social environment is to educate the community about the existence of an open repository by building partnership with community-oriented research centres through seminars, workshops, symposium, training, and awareness programmes. The study recommends that librarians should strategize and collaborate with researchers to make open repository an essential research tool.

  15. Nucleotide diversity and phylogenetic relationships among ...

    Indian Academy of Sciences (India)

    NIRAJ SINGH

    for phylogenetic analysis of Gladiolus and related taxa using combined datasets from chloroplast genome. The psbA–trnH ... phylogenetic relationships among cultivars could be useful for hybridization programmes for further improvement of the crop. [Singh N. ... breeding in nature, and exhibited diverse pollination mech-.

  16. Numerical modelling of fracture displacements due to thermal load from a KBS-3 repository

    Energy Technology Data Exchange (ETDEWEB)

    Hakami, Eva; Olofsson, Stig-Olof [Itasca Geomekanik AB, Stockholm (Sweden)

    2002-01-01

    The objective of the project has been to estimate the largest shear displacements that could be expected on a pre-existing fracture located in the repository area, due to the heat release from the deposited waste. Two-dimensional numerical analyses using the 'Universal Distinct Element Code' (UDEC) have been performed. The UDEC models represent a vertical cross section of a KBS-3 type repository with a large planar fracture intersecting a deposition hole at the repository centre. The extension, dip and mechanical properties of the fracture were changed in different models to evaluate the influence of these parameters on fracture shear displacements. The fracture was modelled using a Coulomb slip criterion with no cohesion and no dilation. The rock mass surrounding the fracture was modelled as a homogeneous, isotropic and elastic material, with a Young's modulus of 40 GPa. The initial heat release per unit repository area was assumed to be 8W/m{sup 2} (total power/total repository area). The shear displacements occur due to the thermal expansion of the rock surrounding the heat generating canisters. The rock mass is almost free to expand vertically, but is constrained horizontally, which gives a temperature-induced addition of shear stresses in the plane of the fracture. The shear movement of the fracture therefore follows the temperature development in the surrounding rock and the maximum shear displacement develops about 200 years after the waste deposition. Altogether, twenty cases are analysed. The maximum shear displacement, which occurs at the fracture centre, amounts to 0.2-13.8 cm depending on the fracture parameters. Among the analysed cases, the largest shear values, about 13 cm, was calculated for the cases with about 700 m long fractures with a shear stiffness of 0.005 GPa/m. Also, for large fractures with a higher shear stiffness of 5 GPa/m, but with a low friction angle (15 deg), the shear displacement reaches similar magnitudes, about

  17. VerSi. A method for the quantitative comparison of repository systems

    Energy Technology Data Exchange (ETDEWEB)

    Kaempfer, T.U.; Ruebel, A.; Resele, G. [AF-Consult Switzerland Ltd, Baden (Switzerland); Moenig, J. [GRS Braunschweig (Germany)

    2015-07-01

    Decision making and design processes for radioactive waste repositories are guided by safety goals that need to be achieved. In this context, the comparison of different disposal concepts can provide relevant support to better understand the performance of the repository systems. Such a task requires a method for a traceable comparison that is as objective as possible. We present a versatile method that allows for the comparison of different disposal concepts in potentially different host rocks. The condition for the method to work is that the repository systems are defined to a comparable level including designed repository structures, disposal concepts, and engineered and geological barriers which are all based on site-specific safety requirements. The method is primarily based on quantitative analyses and probabilistic model calculations regarding the long-term safety of the repository systems under consideration. The crucial evaluation criteria for the comparison are statistical key figures of indicators that characterize the radiotoxicity flux out of the so called containment-providing rock zone (einschlusswirksamer Gebirgsbereich). The key figures account for existing uncertainties with respect to the actual site properties, the safety relevant processes, and the potential future impact of external processes on the repository system, i.e., they include scenario-, process-, and parameter-uncertainties. The method (1) leads to an evaluation of the retention and containment capacity of the repository systems and its robustness with respect to existing uncertainties as well as to potential external influences; (2) specifies the procedures for the system analyses and the calculation of the statistical key figures as well as for the comparative interpretation of the key figures; and (3) also gives recommendations and sets benchmarks for the comparative assessment of the repository systems under consideration based on the key figures and additional qualitative

  18. Estimation of rates-across-sites distributions in phylogenetic substitution models.

    Science.gov (United States)

    Susko, Edward; Field, Chris; Blouin, Christian; Roger, Andrew J

    2003-10-01

    Previous work has shown that it is often essential to account for the variation in rates at different sites in phylogenetic models in order to avoid phylogenetic artifacts such as long branch attraction. In most current models, the gamma distribution is used for the rates-across-sites distributions and is implemented as an equal-probability discrete gamma. In this article, we introduce discrete distribution estimates with large numbers of equally spaced rate categories allowing us to investigate the appropriateness of the gamma model. With large numbers of rate categories, these discrete estimates are flexible enough to approximate the shape of almost any distribution. Likelihood ratio statistical tests and a nonparametric bootstrap confidence-bound estimation procedure based on the discrete estimates are presented that can be used to test the fit of a parametric family. We applied the methodology to several different protein data sets, and found that although the gamma model often provides a good parametric model for this type of data, rate estimates from an equal-probability discrete gamma model with a small number of categories will tend to underestimate the largest rates. In cases when the gamma model assumption is in doubt, rate estimates coming from the discrete rate distribution estimate with a large number of rate categories provide a robust alternative to gamma estimates. An alternative implementation of the gamma distribution is proposed that, for equal numbers of rate categories, is computationally more efficient during optimization than the standard gamma implementation and can provide more accurate estimates of site rates.

  19. Nuclide release calculation in the near-field of a reference HLW repository

    International Nuclear Information System (INIS)

    Lee, Youn Myoung; Hwang, Yong Soo; Kang, Chul Hyung

    2004-01-01

    The HLW-relevant R and D program for disposal of high-level radioactive waste has been carried out at Korea Atomic Energy Research Institute (KAERI) since early 1997 in order to develop a conceptual Korea Reference Repository System for direct disposal of nuclear spent fuel by the end of 2007. A preliminary reference geologic repository concept considering such established criteria and requirements as waste and generic site characteristics in Korea was roughly envisaged in 2003 focusing on the near-field components of the repository system. According to above basic repository concept, which is similar to that of Swedish KBS-3 repository, the spent fuel is first encapsulated in corrosion resistant canisters, even though the material has not yet been determined, and then emplaced into the deposition holes surrounded by high density bentonite clay in tunnels constructed at a depth of about 500 m in a stable plutonic rock body. Not only to demonstrate how much a reference repository is safe in the generic point of view with several possible scenarios and cases associated with a preliminary repository concept by conducting calculations for nuclide release and transport in the near-field components of the repository, even though enough information has not been available that much yet, but also to show a methodology by which a generic safety assessment could be performed for further development of Korea reference repository concept, nuclide release calculation study strongly seems to be necessary

  20. Continuing Science and Technology at the Proposed Yucca Mountain Repository

    International Nuclear Information System (INIS)

    Finch, R.J.

    2005-01-01

    Yucca Mountain, Nevada, was designated in 2002 to be the site for the nation's first permanent geological repository for spent nuclear fuel and high-level radioactive waste. The process of selecting a site for the repository began nearly 25 years ago with passage of the Nuclear Waste Policy Act in 1982. The Department of Energy (DOE) is responsible for submitting a license application to the Nuclear Regulatory Commission for constructing and operating the repository, and DOE's Office of Civilian Radioactive Waste Management (OCRWM) is charged with carrying out this action. The use of multiple natural and engineered barriers in the current repository design are considered by OCRWM to be sufficiently robust to warrant license approval; however, potential design enhancements and increased understanding of both natural and engineered barriers, especially over the long time frames during which the waste is to remain isolated from human contact continue to be examined. The Office of Science and Technology and International (OST andI) was created within OCRWM to help explore novel technologies that might lower overall costs and to develop a greater understanding of processes relevant to the long-term performance of the repository. A brief overview of Yucca Mountain, and the role that OST andI has in identifying technological or scientific advances that could make repository operations more efficient or performance more robust, will be presented. It is important to note, however, that adopting any of OST andI's technological or scientific developments will be at the discretion of OCRWM's Office of Repository Development (ORD)

  1. Largest College Endowments, 2011

    Science.gov (United States)

    Chronicle of Higher Education, 2012

    2012-01-01

    Of all endowments valued at more than $250-million, the UCLA Foundation had the highest rate of growth over the previous year, at 49 percent. This article presents a table of the largest college endowments in 2011. The table covers the "rank," "institution," "market value as of June 30, 2011," and "1-year change" of institutions participating in…

  2. Thermal analyses of spent nuclear fuel repository

    International Nuclear Information System (INIS)

    Ikonen, K.

    2003-06-01

    This report contains the temperature dimensioning of the KBS-3V type 1- or 2-panel repository based on the rock properties measured from the Olkiluoto investigations. The report describes first the development of a calculation methodology for the thermal analysis of a repository for nuclear fuel. The disposed canisters produce residual heat due to decay (or disintegration) of radioactive products. The decay heat is conducted to surrounding rock mass. The methods were applied to determine the effect of different parameters on the highest canister temperature and to support the planning, dimensioning and operation of the repository. The thermal diffusivity of the rock is low and the heat released from the canisters is spread into the surrounding rock volume quite slowly causing thermal gradient in the rock close to canisters and the canister temperature is increased remarkably. The maximum temperature on the canister surface is limited to the design temperature of +100 deg C. However, due to uncertainties in thermal analysis parameters (like scattering in rock conductivity) the allowable calculated maximum canister temperature is set to 90 deg C causing a safety margin of 10 deg C. The allowable temperature is controlled by the spacing between adjacent canisters, adjacent tunnels and the distance between separate panels of the repository and the pre-cooling time affecting power of the canisters. Because of the fact that the disposal operation takes several decades, the moment of disposal of an individual canister in addition to the location has an influence on the maximum temperature in the canister. Also, a second disposal panel in the repository has a thermal interaction with the other panel. This interaction is expressed after a few decades at the strongest. It became apparent that the temperature of canister surfaces can be determined by analytic line heat source model much more efficiently than by numerical analysis, if the analytic model is first verified and

  3. Low level waste repositories

    International Nuclear Information System (INIS)

    Hill, P.R.H.; Wilson, M.A.

    1983-11-01

    Factors in selecting a site for low-level radioactive waste disposal are discussed. South Australia has used a former tailings dam in a remote, arid location as a llw repository. There are also low-level waste disposal procedures at the Olympic Dam copper/uranium project

  4. Privacy Impact Assessment (PIA) Repository

    Data.gov (United States)

    Department of Veterans Affairs — This repository contains Privacy Impact Assessments (PIA) that have been vetted/approved. Section 208 of the Electronic Government Act of 2002 (E-Gov Act) requires...

  5. DRIVER: Building a Sustainable Infrastructure of European Scientific Repositories

    CERN Multimedia

    CERN. Geneva

    2007-01-01

    The acronym DRIVER stands for “Digital Repository Infrastructure Vision for European Research”. Ten partners from eight countries have entered into an international partnership, to connect and network as a first step more than 50 physically distributed institutional repositories to one, large-scale, virtual Knowledge Base of European research. Universities and research organisations around the world currently build repositories, whose overall number is estimated to exceed 600 by far. As the academic information landscape is already highly fragmented, DRIVER is the trans-national catalyst to overcome local, isolated efforts and to stop fragmentation by offering one harmonised, virtual knowledge resource. DRIVER currently builds a production quality test-bed to assist the development of a knowledge infrastructure across Europe. DRIVER as a project, funded by the “Research Infrastructure” unit of the European Commission, is also preparing for the future expansion and upgrade of the Digital Repository in...

  6. DRIVER Building a Sustainable Infrastructure of European Scientific Repositories

    CERN Document Server

    CERN. Geneva; Hagemann, Melissa

    2007-01-01

    The acronym DRIVER stands for “Digital Repository Infrastructure Vision for European Research”. Ten partners from eight countries have entered into an international partnership, to connect and network as a first step more than 50 physically distributed institutional repositories to one, large-scale, virtual Knowledge Base of European research. Universities and research organisations around the world currently build repositories, whose overall number is estimated to exceed 600 by far. As the academic information landscape is already highly fragmented, DRIVER is the trans-national catalyst to overcome local, isolated efforts and to stop fragmentation by offering one harmonised, virtual knowledge resource. DRIVER currently builds a production quality test-bed to assist the development of a knowledge infrastructure across Europe. DRIVER as a project, funded by the “Research Infrastructure” unit of the European Commission, is also preparing for the future expansion and upgrade of the Digital Repository inf...

  7. An OAI repository centric peer-review model

    CERN Multimedia

    CERN. Geneva

    2005-01-01

    Pre-print repositories have seen a significant increase in use over the past fifteen years across multiple research domains. Researchers are beginning to develop applications capable of using these repositories to assist the scientific community above and beyond the pure dissemination of information. The contributions set forth by this paper emphasize a deconstructed publication model where in which the peer-review certification phase of a pre-print is mediated by an OAI-compliant peer-review service. This peer-review service uses a social-network algorithm for determining potential reviewers for a submitted manuscript and for weighting the influence of each participating reviewer’s evaluations. The paper also provides a set of peer-review specific metadata tags that can accompany a pre-prints existing metadata record. The combinations of these contributions provide a unique repository-centric peer-review model within the framework of the current OAI standards existing today.

  8. Developing criteria to establish Trusted Digital Repositories

    Science.gov (United States)

    Faundeen, John L.

    2017-01-01

    This paper details the drivers, methods, and outcomes of the U.S. Geological Survey’s quest to establish criteria by which to judge its own digital preservation resources as Trusted Digital Repositories. Drivers included recent U.S. legislation focused on data and asset management conducted by federal agencies spending $100M USD or more annually on research activities. The methods entailed seeking existing evaluation criteria from national and international organizations such as International Standards Organization (ISO), U.S. Library of Congress, and Data Seal of Approval upon which to model USGS repository evaluations. Certification, complexity, cost, and usability of existing evaluation models were key considerations. The selected evaluation method was derived to allow the repository evaluation process to be transparent, understandable, and defensible; factors that are critical for judging competing, internal units. Implementing the chosen evaluation criteria involved establishing a cross-agency, multi-disciplinary team that interfaced across the organization. 

  9. Licensing information needs for a high-level waste repository

    International Nuclear Information System (INIS)

    Wright, R.J.; Greeves, J.T.; Logsdon, M.J.

    1985-01-01

    The information needs for licensing findings during the development of a repository for high-level waste (HLW) are described. In particular, attention is given to the information and needs to demonstrate, for construction authorization purposes: repository constructibility, waste retrievability, waste containment, and waste isolation

  10. Collaboration Nation: The Building of the Welsh Repository Network

    Science.gov (United States)

    Knowles, Jacqueline

    2010-01-01

    Purpose: The purpose of this paper is to disseminate information about the Welsh Repository Network (WRN), innovative work being undertaken to build an integrated network of institutional digital repositories. A collaborative approach, in particular through the provision of centralised technical and organisational support, has demonstrated…

  11. Microsoft Repository Version 2 and the Open Information Model.

    Science.gov (United States)

    Bernstein, Philip A.; Bergstraesser, Thomas; Carlson, Jason; Pal, Shankar; Sanders, Paul; Shutt, David

    1999-01-01

    Describes the programming interface and implementation of the repository engine and the Open Information Model for Microsoft Repository, an object-oriented meta-data management facility that ships in Microsoft Visual Studio and Microsoft SQL Server. Discusses Microsoft's component object model, object manipulation, queries, and information…

  12. Reduction of HLW repository environmental impact by Na-Cooled FBR

    International Nuclear Information System (INIS)

    Ahn, Joonhong; Ikegami, Tetsuo

    2005-01-01

    The present study proposes the total toxicity index of radionuclides that have accumulated in the region exterior to the repository as the environmental impact measure. The measure is quantitatively evaluated by a radionuclide transport models that incorporate the effects of canister-array configuration and the initial mass loading in the waste canister. With the measure, it is demonstrated that the environmental impact of the repository can be effectively reduced by reduction of the initial mass loading resulting from FBR deployment and change in the canister-array configuration in the repository. The rate of increase in the environmental impact with the increase in the repository size can be reduced by reducing the initial mass loading of Np and its precursors. (author)

  13. The main demands and criteria for building site choice for radioactive waste repositories

    International Nuclear Information System (INIS)

    Angelova, R.; Sandul, G.A.; Sen'ko, T.Ya.

    2002-01-01

    There are considered the main demands of building site choice for RAW repositories. At this the accent is placed on geological repositories (underground repositories of geological type) and near surface repositories assigned to disposal of low- and intermediate-level short- and mediate-lived radionuclides. These demands are conditionally separated into two blocks: account of social development of the adjoining territories; account of natural factors characterizing building site. Further there are discussed the questions of anthropogenous influence on a safety functioning of RAW repositories and of urgency of stable development of the adjoining territories. In context of the Ukrainian and other states nuclear laws there is also considered the lawful aspect defining the building site choice for RAW repositories

  14. Post-closure resaturation of a deep radioactive waste repository

    International Nuclear Information System (INIS)

    Cox, I.C.S.; Rodwell, W.R.

    1989-03-01

    The post-closure resaturation of a deep radioactive waste repository has been modelled for a number of generic disposal concepts. A combination of numerical ground water flow simulations and analytical calculations has been used to investigate the variation of repository fluid pressure and degree of water saturation with time, and to determine the factors influencing resaturation times. The host rock permeability was found to be the most important determining factor. For geological environments regarded as likely for a waste repository, resaturation is predicted to be a short term process compared with gas generation and contaminant migration timescales. (author)

  15. Accelerator assisted repositories, technical issue identification and economic assessment

    Energy Technology Data Exchange (ETDEWEB)

    Myers, T.; Favale, A.; Berwald, D. [Northrop Grumman Corp., Bethpage, NY (United States)

    1995-12-31

    An investigation (technical and economic) is presented to quantify the impact of accelerator assisted repository (AAR) system on the US national nuclear repository strategy. An overview of US spent fuel policy is presented which provides a means to comparatively assess competing spent fuel disposition technologies under investigation. The advantages of an AAR system are highlighted and discussed. A companion economic analysis is presented. The results indicate that although a US geologic waste repository will continue to be required, waste partitioning and accelerator transmutation of selected actinides, and long-lived fission products, can result in substantial benefits. (author) 18 refs.

  16. Statistical methods for mechanistic model validation: Salt Repository Project

    International Nuclear Information System (INIS)

    Eggett, D.L.

    1988-07-01

    As part of the Department of Energy's Salt Repository Program, Pacific Northwest Laboratory (PNL) is studying the emplacement of nuclear waste containers in a salt repository. One objective of the SRP program is to develop an overall waste package component model which adequately describes such phenomena as container corrosion, waste form leaching, spent fuel degradation, etc., which are possible in the salt repository environment. The form of this model will be proposed, based on scientific principles and relevant salt repository conditions with supporting data. The model will be used to predict the future characteristics of the near field environment. This involves several different submodels such as the amount of time it takes a brine solution to contact a canister in the repository, how long it takes a canister to corrode and expose its contents to the brine, the leach rate of the contents of the canister, etc. These submodels are often tested in a laboratory and should be statistically validated (in this context, validate means to demonstrate that the model adequately describes the data) before they can be incorporated into the waste package component model. This report describes statistical methods for validating these models. 13 refs., 1 fig., 3 tabs

  17. SKB's safety case for a final repository license application

    International Nuclear Information System (INIS)

    Hedin, Allan; Andersson, Johan

    2014-01-01

    The safety assessment SR-Site is a main component in SKB's license application, submitted in March 2011, to construct and operate a final repository for spent nuclear fuel at Forsmark in the municipality of Oesthammar, Sweden. Its role in the application is to demonstrate long-term safety for a repository at Forsmark. The assessment relates to the KBS-3 disposal concept in which copper canisters with a cast iron insert containing spent nuclear fuel are surrounded by bentonite clay and deposited at approximately 500 m depth in saturated, granitic rock. The principal regulatory acceptance criterion, issued by the Swedish Radiation Safety Authority (SSM), requires that the annual risk of harmful effects after closure not exceed 10 -6 for a representative individual in the group exposed to the greatest risk. SSM's regulations also imply that the assessment time for a repository of this type is one million years after closure. The licence applied for is one in a stepwise series of permits, each requiring a safety report. The next step concerns a permit to start excavation of the repository and requires a preliminary safety assessment report (PSAR) covering both operational and post-closure safety. Later steps include permission to commence trial operation, to commence regular operation and to close the final repository. (authors)

  18. Phylogenetic Position of Barbus lacerta Heckel, 1843

    Directory of Open Access Journals (Sweden)

    Mustafa Korkmaz

    2015-11-01

    As a result, five clades come out from phylogenetic reconstruction and in phylogenetic tree Barbus lacerta determined to be sister group of Barbus macedonicus, Barbus oligolepis and Barbus plebejus complex.

  19. 500 year concrete for a radioactive waste repository

    International Nuclear Information System (INIS)

    Philipose, K.E.

    1988-03-01

    The IRUS (Intrusion resistant underground structure) repository planned at Chalk River for the belowground disposal of low level radioactive waste relies on the durability of concrete for the required 500 year service life. A research program for the IRUS repository to design a durable concrete and also to predict its longevity under the repository environment is in progress. The methodology involves the identification of major degradation agents, and the assessment of the rate of diffusion of corrosive ions and/or the rate of advancement of the reaction front into the concrete. Accelerated test methods are being used on laboratory specimens in conjunction with extrapolation procedures to predict long-term durability from short-term data. The inherent limitations are also examined

  20. Radioactive waste repository study

    International Nuclear Information System (INIS)

    1978-11-01

    This is the third part of a report of a preliminary study for AECL. It summarizes the topics considered in reports AECL-6188-1 and AECL-6188-2 as requirements for an undergpound repository for disposal of wastes produced by the Canadian Nuclear Fuel Program. (author)

  1. The phylogenetics of succession can guide restoration

    DEFF Research Database (Denmark)

    Shooner, Stephanie; Chisholm, Chelsea Lee; Davies, T. Jonathan

    2015-01-01

    Phylogenetic tools have increasingly been used in community ecology to describe the evolutionary relationships among co-occurring species. In studies of succession, such tools may allow us to identify the evolutionary lineages most suited for particular stages of succession and habitat...... rehabilitation. However, to date, these two applications have been largely separate. Here, we suggest that information on phylogenetic community structure might help to inform community restoration strategies following major disturbance. Our study examined phylogenetic patterns of succession based...... for species sorting along abiotic gradients (slope and aspect) on the mine sites that had been abandoned for the longest. Synthesis and applications. Understanding the trajectory of succession is critical for restoration efforts. Our results suggest that early colonizers represent a phylogenetically random...

  2. Effects of Phylogenetic Tree Style on Student Comprehension

    Science.gov (United States)

    Dees, Jonathan Andrew

    Phylogenetic trees are powerful tools of evolutionary biology that have become prominent across the life sciences. Consequently, learning to interpret and reason from phylogenetic trees is now an essential component of biology education. However, students often struggle to understand these diagrams, even after explicit instruction. One factor that has been observed to affect student understanding of phylogenetic trees is style (i.e., diagonal or bracket). The goal of this dissertation research was to systematically explore effects of style on student interpretations and construction of phylogenetic trees in the context of an introductory biology course. Before instruction, students were significantly more accurate with bracket phylogenetic trees for a variety of interpretation and construction tasks. Explicit instruction that balanced the use of diagonal and bracket phylogenetic trees mitigated some, but not all, style effects. After instruction, students were significantly more accurate for interpretation tasks involving taxa relatedness and construction exercises when using the bracket style. Based on this dissertation research and prior studies on style effects, I advocate for introductory biology instructors to use only the bracket style. Future research should examine causes of style effects and variables other than style to inform the development of research-based instruction that best supports student understanding of phylogenetic trees.

  3. Revision history aware repositories of computational models of biological systems.

    Science.gov (United States)

    Miller, Andrew K; Yu, Tommy; Britten, Randall; Cooling, Mike T; Lawson, James; Cowan, Dougal; Garny, Alan; Halstead, Matt D B; Hunter, Peter J; Nickerson, David P; Nunns, Geo; Wimalaratne, Sarala M; Nielsen, Poul M F

    2011-01-14

    Building repositories of computational models of biological systems ensures that published models are available for both education and further research, and can provide a source of smaller, previously verified models to integrate into a larger model. One problem with earlier repositories has been the limitations in facilities to record the revision history of models. Often, these facilities are limited to a linear series of versions which were deposited in the repository. This is problematic for several reasons. Firstly, there are many instances in the history of biological systems modelling where an 'ancestral' model is modified by different groups to create many different models. With a linear series of versions, if the changes made to one model are merged into another model, the merge appears as a single item in the history. This hides useful revision history information, and also makes further merges much more difficult, as there is no record of which changes have or have not already been merged. In addition, a long series of individual changes made outside of the repository are also all merged into a single revision when they are put back into the repository, making it difficult to separate out individual changes. Furthermore, many earlier repositories only retain the revision history of individual files, rather than of a group of files. This is an important limitation to overcome, because some types of models, such as CellML 1.1 models, can be developed as a collection of modules, each in a separate file. The need for revision history is widely recognised for computer software, and a lot of work has gone into developing version control systems and distributed version control systems (DVCSs) for tracking the revision history. However, to date, there has been no published research on how DVCSs can be applied to repositories of computational models of biological systems. We have extended the Physiome Model Repository software to be fully revision history aware

  4. Revision history aware repositories of computational models of biological systems

    Directory of Open Access Journals (Sweden)

    Nickerson David P

    2011-01-01

    Full Text Available Abstract Background Building repositories of computational models of biological systems ensures that published models are available for both education and further research, and can provide a source of smaller, previously verified models to integrate into a larger model. One problem with earlier repositories has been the limitations in facilities to record the revision history of models. Often, these facilities are limited to a linear series of versions which were deposited in the repository. This is problematic for several reasons. Firstly, there are many instances in the history of biological systems modelling where an 'ancestral' model is modified by different groups to create many different models. With a linear series of versions, if the changes made to one model are merged into another model, the merge appears as a single item in the history. This hides useful revision history information, and also makes further merges much more difficult, as there is no record of which changes have or have not already been merged. In addition, a long series of individual changes made outside of the repository are also all merged into a single revision when they are put back into the repository, making it difficult to separate out individual changes. Furthermore, many earlier repositories only retain the revision history of individual files, rather than of a group of files. This is an important limitation to overcome, because some types of models, such as CellML 1.1 models, can be developed as a collection of modules, each in a separate file. The need for revision history is widely recognised for computer software, and a lot of work has gone into developing version control systems and distributed version control systems (DVCSs for tracking the revision history. However, to date, there has been no published research on how DVCSs can be applied to repositories of computational models of biological systems. Results We have extended the Physiome Model

  5. VHA Data Sharing Agreement Repository

    Data.gov (United States)

    Department of Veterans Affairs — The VHA Data Sharing Agreement Repository serves as a centralized location to collect and report on agreements that share VHA data with entities outside of VA. It...

  6. Bayesian models for comparative analysis integrating phylogenetic uncertainty

    Directory of Open Access Journals (Sweden)

    Villemereuil Pierre de

    2012-06-01

    Full Text Available Abstract Background Uncertainty in comparative analyses can come from at least two sources: a phylogenetic uncertainty in the tree topology or branch lengths, and b uncertainty due to intraspecific variation in trait values, either due to measurement error or natural individual variation. Most phylogenetic comparative methods do not account for such uncertainties. Not accounting for these sources of uncertainty leads to false perceptions of precision (confidence intervals will be too narrow and inflated significance in hypothesis testing (e.g. p-values will be too small. Although there is some application-specific software for fitting Bayesian models accounting for phylogenetic error, more general and flexible software is desirable. Methods We developed models to directly incorporate phylogenetic uncertainty into a range of analyses that biologists commonly perform, using a Bayesian framework and Markov Chain Monte Carlo analyses. Results We demonstrate applications in linear regression, quantification of phylogenetic signal, and measurement error models. Phylogenetic uncertainty was incorporated by applying a prior distribution for the phylogeny, where this distribution consisted of the posterior tree sets from Bayesian phylogenetic tree estimation programs. The models were analysed using simulated data sets, and applied to a real data set on plant traits, from rainforest plant species in Northern Australia. Analyses were performed using the free and open source software OpenBUGS and JAGS. Conclusions Incorporating phylogenetic uncertainty through an empirical prior distribution of trees leads to more precise estimation of regression model parameters than using a single consensus tree and enables a more realistic estimation of confidence intervals. In addition, models incorporating measurement errors and/or individual variation, in one or both variables, are easily formulated in the Bayesian framework. We show that BUGS is a useful, flexible

  7. Bayesian models for comparative analysis integrating phylogenetic uncertainty

    Science.gov (United States)

    2012-01-01

    Background Uncertainty in comparative analyses can come from at least two sources: a) phylogenetic uncertainty in the tree topology or branch lengths, and b) uncertainty due to intraspecific variation in trait values, either due to measurement error or natural individual variation. Most phylogenetic comparative methods do not account for such uncertainties. Not accounting for these sources of uncertainty leads to false perceptions of precision (confidence intervals will be too narrow) and inflated significance in hypothesis testing (e.g. p-values will be too small). Although there is some application-specific software for fitting Bayesian models accounting for phylogenetic error, more general and flexible software is desirable. Methods We developed models to directly incorporate phylogenetic uncertainty into a range of analyses that biologists commonly perform, using a Bayesian framework and Markov Chain Monte Carlo analyses. Results We demonstrate applications in linear regression, quantification of phylogenetic signal, and measurement error models. Phylogenetic uncertainty was incorporated by applying a prior distribution for the phylogeny, where this distribution consisted of the posterior tree sets from Bayesian phylogenetic tree estimation programs. The models were analysed using simulated data sets, and applied to a real data set on plant traits, from rainforest plant species in Northern Australia. Analyses were performed using the free and open source software OpenBUGS and JAGS. Conclusions Incorporating phylogenetic uncertainty through an empirical prior distribution of trees leads to more precise estimation of regression model parameters than using a single consensus tree and enables a more realistic estimation of confidence intervals. In addition, models incorporating measurement errors and/or individual variation, in one or both variables, are easily formulated in the Bayesian framework. We show that BUGS is a useful, flexible general purpose tool for

  8. The Complete Mitochondrial Genome of Corizus tetraspilus (Hemiptera: Rhopalidae) and Phylogenetic Analysis of Pentatomomorpha

    Science.gov (United States)

    Guo, Zhong-Long; Wang, Juan; Shen, Yu-Ying

    2015-01-01

    Insect mitochondrial genome (mitogenome) are the most extensively used genetic information for molecular evolution, phylogenetics and population genetics. Pentatomomorpha (>14,000 species) is the second largest infraorder of Heteroptera and of great economic importance. To better understand the diversity and phylogeny within Pentatomomorpha, we sequenced and annotated the complete mitogenome of Corizus tetraspilus (Hemiptera: Rhopalidae), an important pest of alfalfa in China. We analyzed the main features of the C. tetraspilus mitogenome, and provided a comparative analysis with four other Coreoidea species. Our results reveal that gene content, gene arrangement, nucleotide composition, codon usage, rRNA structures and sequences of mitochondrial transcription termination factor are conserved in Coreoidea. Comparative analysis shows that different protein-coding genes have been subject to different evolutionary rates correlated with the G+C content. All the transfer RNA genes found in Coreoidea have the typical clover leaf secondary structure, except for trnS1 (AGN) which lacks the dihydrouridine (DHU) arm and possesses a unusual anticodon stem (9 bp vs. the normal 5 bp). The control regions (CRs) among Coreoidea are highly variable in size, of which the CR of C. tetraspilus is the smallest (440 bp), making the C. tetraspilus mitogenome the smallest (14,989 bp) within all completely sequenced Coreoidea mitogenomes. No conserved motifs are found in the CRs of Coreoidea. In addition, the A+T content (60.68%) of the CR of C. tetraspilus is much lower than that of the entire mitogenome (74.88%), and is lowest among Coreoidea. Phylogenetic analyses based on mitogenomic data support the monophyly of each superfamily within Pentatomomorpha, and recognize a phylogenetic relationship of (Aradoidea + (Pentatomoidea + (Lygaeoidea + (Pyrrhocoroidea + Coreoidea)))). PMID:26042898

  9. Deep geological isolation of nuclear waste: numerical modeling of repository scale hydrology

    International Nuclear Information System (INIS)

    Dettinger, M.D.

    1980-04-01

    The Scope of Work undertaken covers three main tasks, described as follows: (Task 1) CDM provided consulting services to the University on modeling aspects of the study having to do with transport processes involving the local groundwater system near the repository and the flow of fluids and vapors through the various porous media making up the repository system. (Task 2) CDM reviewed literature related to repository design, concentrating on effects of the repository geometry, location and other design factors on the flow of fluids within the repository boundaries, drainage from the repository structure, and the eventual transport of radionucldies away from the repository site. (Task 3) CDM, in a joint effort with LLL personnel, identified generic boundary and initial conditions, identified processes to be modeled, and recommended a modeling approach with suggestions for appropriate simplifications and approximations to the problem and identifiying important parameters necessary to model the processes. This report consists of two chapters and an appendix. The first chapter (Chapter III of the LLL report) presents a detailed description and discussion of the modeling approach developed in this project, its merits and weaknesses, and a brief review of the difficulties anticipated in implementing the approach. The second chapter (Chapter IV of the LLL report) presents a summary of a survey of researchers in the field of repository performance analysis and a discussion of that survey in light of the proposed modeling approach. The appendix is a review of the important physical processes involved in the potential hydrologic transport of radionuclides through, around and away from deep geologic nuclear waste repositories

  10. Repository development status in Spain

    Energy Technology Data Exchange (ETDEWEB)

    Rodriguez Beceiro, Alvaro; Zuloaga, Pablo [ENRESA (Spain)

    2009-06-15

    The paper describes the status of repository development for the different waste categories. Low and Intermediate Waste Disposal facility of El Cabril was commissioned in 1992 and is in normal operation. The major modifications and activities during the last years are the adaptation to waste streams not initially foreseen such as some decommissioning waste or waste from steel industry, and the improvement of its performance assessment, supported by a R and D and refined models. As part of this facility, a new disposal facility specifically intended for very low activity waste has been constructed and commissioned in July 2008. Its design is based on the European Directive for hazardous waste disposal. National policy for Nuclear Spent Fuel and High-Level waste is focused on the development of a centralized storage facility of the vault type, whose site location would be selected through a volunteering process. Meanwhile, with the aim of solving specific problems, three individual storage facilities are in different status at reactor sites. Research on final solution, including some repository aspects as well as separation and transmutation are being carried out in accordance to ENRESA's R and D program. ENRESA has developed conceptual designs for non site specific repositories, both in granite and clay, and has carried out their corresponding performance assessment exercises. (authors)

  11. Nucleotide diversity and phylogenetic relationships among ...

    Indian Academy of Sciences (India)

    Navya

    2 attached at the base of tree as the diverging Iridaceae relative's lineage. Present study revealed that psbA-trnH region are useful in addressing questions of phylogenetic relationships among the Gladiolus cultivars, as these intergenic spacers are more variable and have more phylogenetically informative sites than the ...

  12. 77 FR 65177 - Swap Data Repositories: Interpretative Statement Regarding the Confidentiality and...

    Science.gov (United States)

    2012-10-25

    ... COMMODITY FUTURES TRADING COMMISSION Swap Data Repositories: Interpretative Statement Regarding...\\ which requires all swaps-- whether cleared or uncleared--to be reported to swap data repositories... of the CEA to add a definition of the term ``swap data repository.'' Pursuant to CEA section 1a(48...

  13. Schematic designs for penetration seals for a repository in the Paradox Basin

    International Nuclear Information System (INIS)

    Kelsall, P.C.; Meyer, D.; Case, J.B.; Coons, W.E.

    1985-12-01

    The isolation of radioactive wastes in geologic repositories requires that human-made penetrations such as shafts, tunnels, or boreholes are adequately sealed. This report describes schematic seal designs for a repository in bedded salt referenced to the stratigraphy of the Paradox Basin. The designs are presented for extensive peer review and will be updated as conceptual designs if the Paraodx Basin is selected as a candidate repository site. The principal components used in the shaft seal system are concrete bulkheads interspersed with highly compacted bentonite-rich earth fill. In the repository-level tunnels and rooms, the principal material used in the seal system is crushed salt obtained from excavating the repository. It is anticipated that crushed salt will consolidate in response to closure of the repository rooms, to the degree that mechanical and hydrologic properties will eventually match those of undisturbed, intact salt. For Paradox Basin Cycle 6 salt, analyses indictate that this process will require approximately 300 years for a seal located at the base of one of the repository shafts (where there is little increase in temperature due to waste emplacement) and approximately 140 years for a seal located in a main passageway within the repository. These analyses are based on uncertain laboratory data regarding intact salt creep rates and crushed salt consolidation characteristics, and must be regarded as preliminary

  14. National Aeronautics and Space Administration Biological Specimen Repository

    Science.gov (United States)

    McMonigal, Kathleen A.; Pietrzyk, Robert a.; Johnson, Mary Anne

    2008-01-01

    The National Aeronautics and Space Administration Biological Specimen Repository (Repository) is a storage bank that is used to maintain biological specimens over extended periods of time and under well-controlled conditions. Samples from the International Space Station (ISS), including blood and urine, will be collected, processed and archived during the preflight, inflight and postflight phases of ISS missions. This investigation has been developed to archive biosamples for use as a resource for future space flight related research. The International Space Station (ISS) provides a platform to investigate the effects of microgravity on human physiology prior to lunar and exploration class missions. The storage of crewmember samples from many different ISS flights in a single repository will be a valuable resource with which researchers can study space flight related changes and investigate physiological markers. The development of the National Aeronautics and Space Administration Biological Specimen Repository will allow for the collection, processing, storage, maintenance, and ethical distribution of biosamples to meet goals of scientific and programmatic relevance to the space program. Archiving of the biosamples will provide future research opportunities including investigating patterns of physiological changes, analysis of components unknown at this time or analyses performed by new methodologies.

  15. NIH Common Data Elements Repository

    Data.gov (United States)

    U.S. Department of Health & Human Services — The NIH Common Data Elements (CDE) Repository has been designed to provide access to structured human and machine-readable definitions of data elements that have...

  16. Oxidation-reduction reactions. Overview and implications for repository studies

    International Nuclear Information System (INIS)

    Apted, Michael J.; Arthur, Randolph C.; Sasamoto, Hiroshi; Yui, Mikazu; Iwatsuki, Teruki

    2001-02-01

    The purpose of this report is to provide a survey and review on oxidation-reduction ('redox') reactions, with particular emphasis on implications for disposal of high-level waste (HLW) in deep geological formations. As an overview, the focus is on basic principles, problems, and proposed research related specifically to the assessment of redox for a HLW repository in Japan. For a more comprehensive treatment of redox and the myriad associated issues, the reader is directed to the cited textbooks used as primary references in this report. Low redox conditions in deep geological formations is a key assumption in the 'Second Progress Report on Research and Development for the Geological Disposal of HLW in Japan' (hereafter called H12'). The release behavior of multi-valent radioelements (e.g., Tc, Se, U, Pu, Np), as well as daughter radioelements of these radioelements, from a deep geological repository are sensitively related to redox conditions. Furthermore, the performance of certain barrier materials, such as overpack and buffer, may be impacted by redox conditions. Given this importance, this report summarizes some key topics for future technical studies supporting site characterization and repository performance as follows: To fully test the conceptual models for system Eh, it will be necessary to measure and evaluate trace element and isotopic information of both coexisting groundwater and reactive minerals of candidate rocks. Because of importance of volatile species (e.g., O 2 , H 2 etc.) in redox reactions, and given the high total pressure of a repository located 500 to 1000 meter deep, laboratory investigations of redox will necessarily require use of pressurized test devices that can fully simulate repository conditions. The stability (redox capacity) of the repository system with respect to potential changes in redox boundary condition induced by oxidizing waters intrusion should be established experimentally. An overall conceptual model that unifies

  17. Multi criteria decision analysis on a waste repository in Mol

    International Nuclear Information System (INIS)

    Carle, B.

    2005-01-01

    In Belgium, the management of radioactive waste is taken care of by ONDRAF/NIRAS, the Belgian Agency for Radioactive Waste and Enriched Fissile Materials. Local partnerships with stakeholders from municipalities in existing nuclear zones were setup to facilitate the dialogue between the repository designers and the local community. Since the establishment of the partnership in Mol, MONA in February 2000, all aspects of a possible near-surface or a deep geological repository are discussed in 4 working groups by around 50 volunteer members. The outcome of the discussions in the partnership can be a shared project, supported by both local stakeholders and ONDRAF/NIRAS, in which the specifications and the conditions needed for establishing a repository in Mol are elaborated. MONA asked the Decision Strategy Research Department of SCK-CEN to organise a Multi Criteria Analysis (MCA) in the context of the deciding between a surface and a deep repository for low level radioactive waste. The objective of the multi criteria analysis is to support a number of representatives of the various working groups within MONA in their selection between two acceptable options for a repository of low level radioactive waste on the territory of Mol. The options are the surface repository developed by the working groups of MONA, and a deep repository in the clay layers underneath the nuclear site of Mol. This study should facilitate the selection between both options, or in case this appears to be difficult, at least to get a well-structured overview of all factors (criteria) of importance to the judgement, and to get insight into the degree in which the various criteria contribute to the selection

  18. Point estimates in phylogenetic reconstructions

    OpenAIRE

    Benner, Philipp; Bacak, Miroslav; Bourguignon, Pierre-Yves

    2013-01-01

    Motivation: The construction of statistics for summarizing posterior samples returned by a Bayesian phylogenetic study has so far been hindered by the poor geometric insights available into the space of phylogenetic trees, and ad hoc methods such as the derivation of a consensus tree makeup for the ill-definition of the usual concepts of posterior mean, while bootstrap methods mitigate the absence of a sound concept of variance. Yielding satisfactory results with sufficiently concentrated pos...

  19. High-level waste repository-induced effects

    Energy Technology Data Exchange (ETDEWEB)

    Leupin, O.X.; Marschall, P.; Johnson, L.; Cloet, V.; Schneider, J. [National Cooperative for the Disposal of Radioactive Waste (NAGRA), Wettingen (Switzerland); Smith, P. [Safety Assessment Management Ltd, Henley-On-Thames, Oxfordshire (United Kingdom); Savage, D. [Savage Earth Associates Ltd, Bournemouth, Dorset (United Kingdom); Senger, R. [Intera Inc., Ennetbaden (Switzerland)

    2016-10-15

    This status report aims at describing and assessing the interactions of the radioactive waste emplaced in a high-level waste (HLW) repository with the engineered materials and the Opalinus Clay host rock. The Opalinus Clay has a thickness of about 100 m in the proposed siting regions. Among other things the results are used to steer the RD and D programme of NAGRA. The repository-induced effects considered in this report are of the following broad types: - Thermal effects: i.e. effects on the host rock and engineered barriers arising principally from the heat generated by the waste. - Rock-mechanical effects: i.e. effects arising from the mechanical disturbance to the rock caused by the excavation of the emplacement rooms and other underground structures. - Hydraulic and gas-related effects: i.e. the effects of repository resaturation and of gas generation, e.g. due to the corrosion of metals within the repository, on the host rock and engineered barriers. - Chemical effects: i.e. chemical interactions between the waste, the engineered materials and the host rock, with a focus on chemical effects of the waste and engineered materials on the host rock. The assessment of the repository-induced effects shows that detrimental chemical and mechanical impacts are largely confined to the rock immediately adjacent to the excavations, thermal impacts are controllable by limiting the heat load and gas effects are limited by ensuring acceptably low gas production rates and by the natural tendency of the gas to escape along the excavations and the excavation damaged zone (EDZ) rather than through the undisturbed rock. Specific measures that are part of the current reference design are discussed in relation to their significance with respect to repository-induced effects. The SF/HLW emplacement rooms (emplacement drifts) are designed, constructed, operated and finally backfilled in such a way that formation of excavation damaged zones is limited. Specifically this is achieved

  20. High-level waste repository-induced effects

    International Nuclear Information System (INIS)

    Leupin, O.X.; Marschall, P.; Johnson, L.; Cloet, V.; Schneider, J.; Smith, P.; Savage, D.; Senger, R.

    2016-10-01

    This status report aims at describing and assessing the interactions of the radioactive waste emplaced in a high-level waste (HLW) repository with the engineered materials and the Opalinus Clay host rock. The Opalinus Clay has a thickness of about 100 m in the proposed siting regions. Among other things the results are used to steer the RD and D programme of NAGRA. The repository-induced effects considered in this report are of the following broad types: - Thermal effects: i.e. effects on the host rock and engineered barriers arising principally from the heat generated by the waste. - Rock-mechanical effects: i.e. effects arising from the mechanical disturbance to the rock caused by the excavation of the emplacement rooms and other underground structures. - Hydraulic and gas-related effects: i.e. the effects of repository resaturation and of gas generation, e.g. due to the corrosion of metals within the repository, on the host rock and engineered barriers. - Chemical effects: i.e. chemical interactions between the waste, the engineered materials and the host rock, with a focus on chemical effects of the waste and engineered materials on the host rock. The assessment of the repository-induced effects shows that detrimental chemical and mechanical impacts are largely confined to the rock immediately adjacent to the excavations, thermal impacts are controllable by limiting the heat load and gas effects are limited by ensuring acceptably low gas production rates and by the natural tendency of the gas to escape along the excavations and the excavation damaged zone (EDZ) rather than through the undisturbed rock. Specific measures that are part of the current reference design are discussed in relation to their significance with respect to repository-induced effects. The SF/HLW emplacement rooms (emplacement drifts) are designed, constructed, operated and finally backfilled in such a way that formation of excavation damaged zones is limited. Specifically this is achieved

  1. Schematic designs for penetration seals for a reference repository in bedded salt

    International Nuclear Information System (INIS)

    Kelsall, P.C.; Case, J.B.; Meyer, D.; Coons, W.E.

    1982-11-01

    The isolation of radioactive wastes in geologic repositories requires that man-made penetrations such as shafts, tunnels, or boreholes are adequately sealed. This report describes schematic seal designs for a repository in bedded salt referenced to the straitigraphy of southeastern New Mexico. The designs are presented for extensive peer review and will be updated as site-specific conceptual designs when a site for a repository in salt has been selected. The principal material used in the seal system is crushed salt obtained from excavating the repository. It is anticipated that crushed salt will consolidate as the repository rooms creep close to the degree that mechanical and hydrologic properties will eventually match those of undisturbed, intact salt. For southeastern New Mexico salt, analyses indicate that this process will require approximately 1000 years for a seal located at the base of one of the repository shafts (where there is little increase in temperature due to waste emplacement) and approximately 400 years for a seal located in an access tunnel within the repository. Bulkheads composed of contrete or salt bricks are also included in the seal system as components which will have low permeability during the period required for salt consolidation

  2. An evaluation of repository-induced disturbances for a KBS-3 type repository

    Energy Technology Data Exchange (ETDEWEB)

    Savage, D.; McLeod, R.; McEwen, T. [QuantiSci, Melton Mowbray (United Kingdom)

    1998-03-01

    This report considers the potential physical and chemical perturbations caused by the excavation, operation and backfilling and sealing of a KBS-3 type repository for spent fuel in Sweden. Parts of the underground excavations are likely to remain open to the atmosphere for up to several decades. Time-dependent changes to the chemical environment and the properties of the geological formation will be occurring as well as the initial disturbance of construction and subsequent changes after backfilling. In addition, this report also discusses issues that arise from the co-disposal of spent fuel and intermediate level waste. The processes which are likely to act during each stage of a repository from construction through to backfilling and sealing have been reviewed and the degree to which these processes are understood and represented within the performance assessment is discussed. The areas of particular interest are: The coupling of thermal, hydrogeological and mechanical processes with particular reference to the development of the near-field; Understanding the transient process of re-saturation with particular reference to the buffer material surrounding the waste canisters, including chemical changes to the material; The impact of accidental events during the construction and operational phases of work and their possible consequence on the long term performance of the repository; Chemical issues relating to the co-disposal of spent fuel and intermediate level wastes within a single facility. When consideration of transient processes and coupling is discussed, it is apparent that numerical tools and a complete understanding to provide quantitative information is lacking. The importance of the engineered barrier system within the performance assessment for spent fuel disposal is recognised and the emphasis is placed on the understanding of the coupled processes in the evolution in the near-field of the geosphere 45 refs, 4 fig, 2 tabs

  3. An evaluation of repository-induced disturbances for a KBS-3 type repository

    International Nuclear Information System (INIS)

    Savage, D.; McLeod, R.; McEwen, T.

    1998-03-01

    This report considers the potential physical and chemical perturbations caused by the excavation, operation and backfilling and sealing of a KBS-3 type repository for spent fuel in Sweden. Parts of the underground excavations are likely to remain open to the atmosphere for up to several decades. Time-dependent changes to the chemical environment and the properties of the geological formation will be occurring as well as the initial disturbance of construction and subsequent changes after backfilling. In addition, this report also discusses issues that arise from the co-disposal of spent fuel and intermediate level waste. The processes which are likely to act during each stage of a repository from construction through to backfilling and sealing have been reviewed and the degree to which these processes are understood and represented within the performance assessment is discussed. The areas of particular interest are: The coupling of thermal, hydrogeological and mechanical processes with particular reference to the development of the near-field; Understanding the transient process of re-saturation with particular reference to the buffer material surrounding the waste canisters, including chemical changes to the material; The impact of accidental events during the construction and operational phases of work and their possible consequence on the long term performance of the repository; Chemical issues relating to the co-disposal of spent fuel and intermediate level wastes within a single facility. When consideration of transient processes and coupling is discussed, it is apparent that numerical tools and a complete understanding to provide quantitative information is lacking. The importance of the engineered barrier system within the performance assessment for spent fuel disposal is recognised and the emphasis is placed on the understanding of the coupled processes in the evolution in the near-field of the geosphere

  4. SUBSURFACE REPOSITORY INTEGRATED CONTROL SYSTEM DESIGN

    International Nuclear Information System (INIS)

    C.J. Fernado

    1998-01-01

    The purpose of this document is to develop preliminary high-level functional and physical control system architectures for the proposed subsurface repository at Yucca Mountain. This document outlines overall control system concepts that encompass and integrate the many diverse systems being considered for use within the subsurface repository. This document presents integrated design concepts for monitoring and controlling the diverse set of subsurface operations. The subsurface repository design will be composed of a series of diverse systems that will be integrated to accomplish a set of overall functions and objectives. The subsurface repository contains several Instrumentation and Control (I andC) related systems including: waste emplacement systems, ventilation systems, communication systems, radiation monitoring systems, rail transportation systems, ground control monitoring systems, utility monitoring systems (electrical, lighting, water, compressed air, etc.), fire detection and protection systems, retrieval systems, and performance confirmation systems. Each of these systems involve some level of I andC and will typically be integrated over a data communication network. The subsurface I andC systems will also integrate with multiple surface-based site-wide systems such as emergency response, health physics, security and safeguards, communications, utilities and others. The scope and primary objectives of this analysis are to: (1) Identify preliminary system level functions and interface needs (Presented in the functional diagrams in Section 7.2). (2) Examine the overall system complexity and determine how and on what levels these control systems will be controlled and integrated (Presented in Section 7.2). (3) Develop a preliminary subsurface facility-wide design for an overall control system architecture, and depict this design by a series of control system functional block diagrams (Presented in Section 7.2). (4) Develop a series of physical architectures

  5. SUBSURFACE REPOSITORY INTEGRATED CONTROL SYSTEM DESIGN

    Energy Technology Data Exchange (ETDEWEB)

    C.J. Fernado

    1998-09-17

    The purpose of this document is to develop preliminary high-level functional and physical control system architectures for the proposed subsurface repository at Yucca Mountain. This document outlines overall control system concepts that encompass and integrate the many diverse systems being considered for use within the subsurface repository. This document presents integrated design concepts for monitoring and controlling the diverse set of subsurface operations. The subsurface repository design will be composed of a series of diverse systems that will be integrated to accomplish a set of overall functions and objectives. The subsurface repository contains several Instrumentation and Control (I&C) related systems including: waste emplacement systems, ventilation systems, communication systems, radiation monitoring systems, rail transportation systems, ground control monitoring systems, utility monitoring systems (electrical, lighting, water, compressed air, etc.), fire detection and protection systems, retrieval systems, and performance confirmation systems. Each of these systems involve some level of I&C and will typically be integrated over a data communication network. The subsurface I&C systems will also integrate with multiple surface-based site-wide systems such as emergency response, health physics, security and safeguards, communications, utilities and others. The scope and primary objectives of this analysis are to: (1) Identify preliminary system level functions and interface needs (Presented in the functional diagrams in Section 7.2). (2) Examine the overall system complexity and determine how and on what levels these control systems will be controlled and integrated (Presented in Section 7.2). (3) Develop a preliminary subsurface facility-wide design for an overall control system architecture, and depict this design by a series of control system functional block diagrams (Presented in Section 7.2). (4) Develop a series of physical architectures that

  6. The Vital Role of Free Access in Supporting Digital Repositories

    African Journals Online (AJOL)

    pc

    2018-03-05

    Mar 5, 2018 ... the scientific research forward, stressing that the free access to the scientific .... links in the digital repositories for the scientific journals publishers not to mention .... psychology, physics and encryption. Moreover, repositories.

  7. Relationship of engineering geology to conceptual repository design in the Gibson Dome area, Utah

    International Nuclear Information System (INIS)

    Helgerson, R.; Henderson, N.

    1984-01-01

    The Paradox Basin in Southeastern Utah is being investigated as a potential site for development of a high-level nuclear waste repository. Geologic considerations are key areas of concern and influence repository design from a number of aspects: depth to the host rock, thickness of the host rock, and hydrologic conditions surrounding the proposed repository are of primary concern. Surface and subsurface investigations have provided data on these key geologic factors for input to the repository design. A repository design concept, based on the surface and subsurface geologic investigations conducted at Gibson Dome, was synthesized to provide needed information on technical feasibility and cost for repository siting decision purposes. Significant features of the surface and subsurface repository facilities are presented. 5 references, 4 figures

  8. Siting Process for HLW Repository in Japan

    International Nuclear Information System (INIS)

    Masuda, S.; Kitayama, K.; Umeki, H.; Naito, M.

    2002-01-01

    In the year 2000, the geological disposal program for high-level radioactive waste in Japan moved from the phase of generic research and development (R and D) into the phase of implementation. Following legislation entitled the ''Specified Radioactive Waste Final Disposal Act'', the Nuclear Waste Management Organization of Japan (NUMO) was established as the implementing organization. The assigned activities of NUMO include selection of the repository site, demonstration of disposal technology at the site, developing relevant licensing applications and construction, operation and closure of the repository. As the first milestone of siting process, NUMO announced to the public an overall procedure for selection of preliminary investigation areas for potential candidate sites on October 29, 2001. The procedure specifies that NUMO will solicit volunteer municipalities for preliminary investigation areas with publishing four documents as an information package. These documents are tentatively entitled ''Instructions for Application'', ''Siting Factors for the Preliminary Investigation Areas'', a ''Repository Concepts'' as well as an ''Site Investigation Community Outreach Scheme''

  9. Structure, Features, and Faculty Content in ARL Member Repositories

    Science.gov (United States)

    Mercer, Holly; Koenig, Jay; McGeachin, Robert B.; Tucker, Sandra L.

    2011-01-01

    Questions about the optimal way to present repository content to authors, submitters, and end-users, prompted this study. The authors examined, through an observation and a survey, the institutional repositories of peer institutions in the ARL for good practices related to the presentation and organization of faculty-authored institutional…

  10. The role of weapons production and military waste in the repository selection process

    International Nuclear Information System (INIS)

    Nelson, D.; Hope, J.; Power, W.; Hunter, T.

    1987-01-01

    The decision to commingle defense waste with commercial waste in the nuclear waste repository program has many impacts on that program. There will be more waste to place in the two repositories authorized under the Nuclear Waste Policy Act, more transport miles to get the waste to a repository, and more costs associated with environmental and socio-economic impact mitigation. This paper explores the links between weapons production and military waste, and the repository selection process. The paper first describes the importance of state, tribe and public participation to the acceptance of a repository site selection. The paper then examines the various estimates of amounts of existing and future military nuclear wastes, and how these estimates affect repository siting decisions. The final section addresses the public policy questions which surround this issue. Repository siting may be jeopardized unless there is open public discussion about existing radioactive contamination at military production sites and about future nuclear weapons production. Cost-sharing is considered within this context

  11. Development and application of a quality assurance system for waste repositories

    International Nuclear Information System (INIS)

    Beckmerhagen, I.; Berg, H.P.

    1996-01-01

    A large set of requirements are developed for the structures, systems and components of a waste repository. These requirements cover different regulations concerning planning, design, construction, operation and decommissioning of a waste repository as well as nuclear-specific requirements on the design of the plant. The implementation of a quality assurance (QA) system is an essential task in order to ensure that the requirements are fulfilled by systematic means. The QA system for the German repositories for radioactive waste is built up as a hierarchic system and described in more detail in particular covering aspects like maintenance of QA relevant systems, structures and components as well as the procedure in case of changes. For the operational phase of a repository a separate site-specific manual had to be developed. Such a manual has been elaborated for the operation of the Morsleben repository; main topics of this manual are presented

  12. Thermal analysis of a heat generating waste repository on the seabed

    International Nuclear Information System (INIS)

    Maynard, M.J.; Butler, T.P.; Firmin, G.H.

    1987-02-01

    The time dependent thermal behaviour of a repository containing heat generating waste has been investigated during loading, transport, and subsequent emplacement on the seabed. Variations of less than 1 0 C in the sealed repository water temperature were calculated to be sufficient to create adequate water circulation. Conservative 1-D analyses were used to estimate a maximum repository water temperature of 256 0 C, occuring about 3 years after emplacement. The temperature distributions within the heat generating waste canisters and grouted titanium tubes have been calculated using 2-D axisymmetric finite element models. Peak temperatures at the waste centre-line were found to be approx. 40 0 C above the repository water temperature. The sensitivity of the results to assumed thermal parameters and to the effect of sediment accumulation have been considered. The possibility and consequences of steam formation within a vented repository have been discussed. (author)

  13. Preclosure radiological safety analysis for accident conditions of the potential Yucca Mountain Repository: Underground facilities

    International Nuclear Information System (INIS)

    Ma, C.W.; Sit, R.C.; Zavoshy, S.J.; Jardine, L.J.; Laub, T.W.

    1992-06-01

    This preliminary preclosure radiological safety analysis assesses the scenarios, probabilities, and potential radiological consequences associated with postulated accidents in the underground facility of the potential Yucca Mountain repository. The analysis follows a probabilistic-risk-assessment approach. Twenty-one event trees resulting in 129 accident scenarios are developed. Most of the scenarios have estimated annual probabilities ranging from 10 -11 /yr to 10 -5 /yr. The study identifies 33 scenarios that could result in offsite doses over 50 mrem and that have annual probabilities greater than 10 -9 /yr. The largest offsite dose is calculated to be 220 mrem, which is less than the 500 mrem value used to define items important to safety in 10 CFR 60. The study does not address an estimate of uncertainties, therefore conclusions or decisions made as a result of this report should be made with caution

  14. Phylogenetic analysis of fungal heterotrimeric G protein-encoding genes and their expression during dimorphism in Mucor circinelloides.

    Science.gov (United States)

    Valle-Maldonado, Marco Iván; Jácome-Galarza, Irvin Eduardo; Díaz-Pérez, Alma Laura; Martínez-Cadena, Guadalupe; Campos-García, Jesús; Ramírez-Díaz, Martha Isela; Reyes-De la Cruz, Homero; Riveros-Rosas, Héctor; Díaz-Pérez, César; Meza-Carmen, Víctor

    2015-12-01

    In fungi, heterotrimeric G proteins are key regulators of biological processes such as mating, virulence, morphology, among others. Mucor circinelloides is a model organism for many biological processes, and its genome contains the largest known repertoire of genes that encode putative heterotrimeric G protein subunits in the fungal kingdom: twelve Gα (McGpa1-12), three Gβ (McGpb1-3), and three Gγ (McGpg1-3). Phylogenetic analysis of fungal Gα showed that they are divided into four distinct groups as reported previously. Fungal Gβ and Gγ are also divided into four phylogenetic groups, and to our understanding this is the first report of a phylogenetic classification for fungal Gβ and Gγ subunits. Almost all genes that encode putative heterotrimeric G subunits in M. circinelloides are differentially expressed during dimorphic growth, except for McGpg1 (Gγ) that showed very low mRNA levels at all developmental stages. Moreover, several of the subunits are expressed in a similar pattern and at the same level, suggesting that they constitute discrete complexes. For example, McGpb3 (Gβ), and McGpg2 (Gγ), are co-expressed during mycelium growth, and McGpa1, McGpb2, and McGpg2, are co-expressed during yeast development. These findings provide the conceptual framework to study the biological role of these genes during M. circinelloides morphogenesis. Copyright © 2015 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.

  15. NWTS conceptual reference repository description (CRRD). Volume 1. Summary

    International Nuclear Information System (INIS)

    1981-05-01

    This report is a Conceptual Reference Repository Description (CRRD) for the terminal storage of spent, unreprocessed fuel assemblies and low-level transuranic waste. It is based on the following three previously prepared conceptual design reports: National Waste Terminal Storage in a Bedded Salt Formation for Spent Unreprocessed Fuel (NWTS-R2), prepared by Kaiser Engineers; National Waste Terminal Storage Repository Number 1 (NWTS-R1), prepared by Stearns-Roger; Spent Fuel Receiving and Packaging Facility Conceptual Design, prepared by Rockwell Hanford Operations and Kaiser Engineers. The CRRD is not itself a conceptual design report, but combines the key features of the above three reports into a description of a reference repository. This description is to be used as a basis for the preparation of a preliminary information report for the repositories. The CRRD discusses from a conceptual engineering standpoint the structures, systems, equipment, and operations necessary to (1) receive unreprocessed spent fuel assemblies via standard shipping casks, (2) offload these assemblies, (3) place the assemblies in canisters, (4) transport the canisters to underground storage locations in the salt dome, and (5) place these canisters in terminal storage. The CRRD also elaborates on the concepts for the retrieval and recovery of the spent fuel after burial; describes the development of the shafts and the underground areas,as well as the supporting operational utility and administrative features of the repository; and discusses the impacts on the reference repository of (1) changes in the waste package concept, (2) dry receiving and dry temporary storage of waste, (3) terminal storage of reprocessing waste, and (4) alternative underground development schemes

  16. Analysis on one underground nuclear waste repository rock mass in USA

    International Nuclear Information System (INIS)

    Ha Qiuling; Zhang Tiantian

    2012-01-01

    When analyzing the rock mass of a underground nuclear waste repository, the current studies are all based on the loading mechanical condition, and the unloading damage of rock mass is unconsidered. According to the different mechanical condition of actual engineering rock mass of loading and unloading, this paper implements a comprehensive analysis on the rock mass deformation of underground nuclear waste repository through the combination of present loading and unloading rock mass mechanics. It is found that the results of comprehensive analysis and actual measured data on the rock mass deformation of underground nuclear waste repository are basically the same, which provide supporting data for the underground nuclear waste repository. (authors)

  17. People's perception of LILW repository

    International Nuclear Information System (INIS)

    Zeleznik, Nadja; Polic, Marko

    2002-01-01

    Full text: Social acceptability of the radioactive waste repository presents a great problem in every country with such a waste. Even if people agree with the need for its construction, the chosen location should be far from their homes (NIMBY). The reasons for such attitudes were attributed to different causes: uneducated public, differences in understanding of radioactivity and risk by experts and lay public, risk communication problems, lack of credibility and social trust, etc. While in earlier days public was blamed for its irrationality, and need for education and information was emphasized, today it is realized that public trust is extremely important if effective risk communication is to be achieved. It is also recognized that it is not so much the content of the risk message itself, as the lack of trust to those responsible for provision of information that is behind this opposition. Perhaps we could apply here Petty and Caciopo's elaboration likelihood model of persuasion, with credibility as a factor in peripheral route of persuasion. Nevertheless also general lowering of social trust should explain social non-agreement. This lack of trust in experts and political institutions is perhaps caused by outwitting public in earlier years, its bad experiences with responsible officials, dangerous accidents (e.g. TMI, Chernobyl), increased influence that professions have over people's welfare, a greater value placed on equality and better educated public, etc. In 1996 the ARAO re-initiated the search for a LILW repository location with a new, so-called combined approach to the site selection, where the technical, geologically led process is combined with participation of local community. In order to get information on people's perception of the LILW repository construction, their willingness to accept it and factors that influence the acceptability, several surveys have been conducted. Groups of experts and lay persons answered the questionnaires. The results of

  18. Largest particle detector nearing completion

    CERN Multimedia

    2006-01-01

    "Construction of another part of the Large Hadron Collider (LHC), the worl's largest particle accelerator at CERN in Switzerland, is nearing completion. The Compact Muon Solenoid (CMS) is oner of the LHC project's four large particle detectors. (1/2 page)

  19. Open Reading Frame Phylogenetic Analysis on the Cloud

    Directory of Open Access Journals (Sweden)

    Che-Lun Hung

    2013-01-01

    Full Text Available Phylogenetic analysis has become essential in researching the evolutionary relationships between viruses. These relationships are depicted on phylogenetic trees, in which viruses are grouped based on sequence similarity. Viral evolutionary relationships are identified from open reading frames rather than from complete sequences. Recently, cloud computing has become popular for developing internet-based bioinformatics tools. Biocloud is an efficient, scalable, and robust bioinformatics computing service. In this paper, we propose a cloud-based open reading frame phylogenetic analysis service. The proposed service integrates the Hadoop framework, virtualization technology, and phylogenetic analysis methods to provide a high-availability, large-scale bioservice. In a case study, we analyze the phylogenetic relationships among Norovirus. Evolutionary relationships are elucidated by aligning different open reading frame sequences. The proposed platform correctly identifies the evolutionary relationships between members of Norovirus.

  20. Availability and Accessibility in an Open Access Institutional Repository: A Case Study

    Science.gov (United States)

    Lee, Jongwook; Burnett, Gary; Vandegrift, Micah; Baeg, Jung Hoon; Morris, Richard

    2015-01-01

    Introduction: This study explores the extent to which an institutional repository makes papers available and accessible on the open Web by using 170 journal articles housed in DigiNole Commons, the institutional repository at Florida State University. Method: To analyse the repository's impact on availability and accessibility, we conducted…

  1. Digital repositories certification: the Data Seal of Approval

    Directory of Open Access Journals (Sweden)

    Stefano Allegrezza

    2015-09-01

    Full Text Available In recent years, it has become increasingly common to entrust records to digital repositories; this assumes an implicit confidence in the repositories reliability, and therefore is urgent to identify the criteria on which to evaluate them. The Data Seal of Approval is a set of sixteen criteria that can be used to ensure that archived data can still be found, understood and used in the future. It is a basic level of certification but it is very useful to highlight the strengths and weaknesses of the deposit; in any case, it constitutes a solid basis for further certification of compliance to ISO 16363 or DIN 31644. The aim of this article is to provide an overview of Data Seal of Approval in the wider context of digital repositories' certification.

  2. Digital Libraries and Repositories in India: An Evaluative Study

    Science.gov (United States)

    Mittal, Rekha; Mahesh, G.

    2008-01-01

    Purpose: The purpose of this research is to identify and evaluate the collections within digital libraries and repositories in India available in the public domain. Design/methodology/approach: The digital libraries and repositories were identified through a study of the literature, as well as internet searching and browsing. The resulting digital…

  3. Characterization of Escherichia coli Phylogenetic Groups ...

    African Journals Online (AJOL)

    Background: Escherichia coli strains mainly fall into four phylogenetic groups (A, B1, B2, and D) and that virulent extra‑intestinal strains mainly belong to groups B2 and D. Aim: The aim was to determine the association between phylogenetic groups of E. coli causing extraintestinal infections (ExPEC) regarding the site of ...

  4. Performance assessment development for a LILW repository in Slovenia

    International Nuclear Information System (INIS)

    Zeleznik, N.; Mele, I.

    2001-01-01

    Simultaneously with the site selection process for a low and intermediate level radioactive waste (LILW) repository, the preliminary assessment of the influence of the specific disposal concept on the environment and on the population was developed. The performance assessment team, organized in 1997 by ARAO, prepared several basic studies in order to clarify the objectives of the performance and safety assessment (PA/SA) procedure. In 1999 also the first performance assessment of two safety cases (surface and underground) for generic site for a LILW repository was realized. In the year 2000 activities on PA/SA analyses continued. A systematic, generic list was prepared of all possible features, events and processes (FEP list) predictable for surface or underground LILW disposal in Slovenia. Recommended and selected were the most reliable scenarios with conceptual models for LILW disposal in normal and altered evolution conditions. New verification of the obtained results was done with more powerful and accurate models for the surface repository over an aquifer of lower water permeability and an underground repository in a plastic rock. The results for both generic cases under normal evolution scenarios showed that there is a negligible dose influence on members of the critical population due to the migration of radionuclides from the foreseen LILW repository. The results of the already performed work as well as plans for the future activities are presented in the paper.(author)

  5. Visualizing phylogenetic tree landscapes.

    Science.gov (United States)

    Wilgenbusch, James C; Huang, Wen; Gallivan, Kyle A

    2017-02-02

    Genomic-scale sequence alignments are increasingly used to infer phylogenies in order to better understand the processes and patterns of evolution. Different partitions within these new alignments (e.g., genes, codon positions, and structural features) often favor hundreds if not thousands of competing phylogenies. Summarizing and comparing phylogenies obtained from multi-source data sets using current consensus tree methods discards valuable information and can disguise potential methodological problems. Discovery of efficient and accurate dimensionality reduction methods used to display at once in 2- or 3- dimensions the relationship among these competing phylogenies will help practitioners diagnose the limits of current evolutionary models and potential problems with phylogenetic reconstruction methods when analyzing large multi-source data sets. We introduce several dimensionality reduction methods to visualize in 2- and 3-dimensions the relationship among competing phylogenies obtained from gene partitions found in three mid- to large-size mitochondrial genome alignments. We test the performance of these dimensionality reduction methods by applying several goodness-of-fit measures. The intrinsic dimensionality of each data set is also estimated to determine whether projections in 2- and 3-dimensions can be expected to reveal meaningful relationships among trees from different data partitions. Several new approaches to aid in the comparison of different phylogenetic landscapes are presented. Curvilinear Components Analysis (CCA) and a stochastic gradient decent (SGD) optimization method give the best representation of the original tree-to-tree distance matrix for each of the three- mitochondrial genome alignments and greatly outperformed the method currently used to visualize tree landscapes. The CCA + SGD method converged at least as fast as previously applied methods for visualizing tree landscapes. We demonstrate for all three mtDNA alignments that 3D

  6. 77 FR 26709 - Swap Data Repositories: Interpretative Statement Regarding the Confidentiality and...

    Science.gov (United States)

    2012-05-07

    ... COMMODITY FUTURES TRADING COMMISSION 17 CFR Part 49 RIN 3038-AD83 Swap Data Repositories... data repositories (``SDRs'').SDRs are new registered entities created by section 728 of the Dodd-Frank... Act amends section 1a of the CEA to add a definition of the term ``swap data repository.'' Pursuant to...

  7. Nuclear waste repository transparency technology test bed demonstrations at WIPP

    International Nuclear Information System (INIS)

    Betsill J, David; Elkins, Ned Z.; Wu, Chuan-Fu; Mewhinney, James D.; Aamodt, Paul

    2000-01-01

    Secretary of Energy, Bill Richardson, has stated that one of the nuclear waste legacy issues is ''The challenge of managing the fuel cycle's back end and assuring the safe use of nuclear power.'' Waste management (i.e., the back end) is a domestic and international issue that must be addressed. A key tool in gaining acceptance of nuclear waste repository technologies is transparency. Transparency provides information to outside parties for independent assessment of safety, security, and legitimate use of materials. Transparency is a combination of technologies and processes that apply to all elements of the development, operation, and closure of a repository system. A test bed for nuclear repository transparency technologies has been proposed to develop a broad-based set of concepts and strategies for transparency monitoring of nuclear materials at the back end of the fuel/weapons cycle. WIPP is the world's first complete geologic repository system for nuclear materials at the back end of the cycle. While it is understood that WIPP does not currently require this type of transparency, this repository has been proposed as realistic demonstration site to generate and test ideas, methods, and technologies about what transparency may entail at the back end of the nuclear materials cycle, and which could be applicable to other international repository developments. An integrated set of transparency demonstrations was developed and deployed during the summer, and fall of 1999 as a proof-of-concept of the repository transparency technology concept. These demonstrations also provided valuable experience and insight into the implementation of future transparency technology development and application. These demonstrations included: Container Monitoring Rocky Flats to WIPP; Underground Container Monitoring; Real-Time Radiation and Environmental Monitoring; Integrated level of confidence in the system and information provided. As the world's only operating deep geologic

  8. Hydrothermal modeling for the efficient design of thermal loading in a nuclear waste repository

    International Nuclear Information System (INIS)

    Cho, Won-Jin; Kim, Jin-Seop; Choi, Heui-Joo

    2014-01-01

    Highlights: • Three-dimensional hydrothermal modeling for HLW repository is performed. • The model reduces the peak temperature in the repository by about 10 °C. • Decreasing the tunnel distance is more efficient to improve the disposal density. • The EDZ surrounding the deposition hole increases the peak temperature. • The peak temperature for the double-layer repository remains below the limit. - Abstract: The thermal analysis of a geological repository for nuclear waste using the three-dimensional hydrothermal model is performed. The hydrothermal model reduces the maximum peak temperature in the repository by about 10 °C compared to the heat conduction model with constant thermal conductivities. Decreasing the tunnel distance is more efficient than decreasing the deposition hole spacing to improve the disposal density for a given thermal load. The annular excavation damaged zone surrounding the deposition hole has a considerable effect on the peak temperature. The possibility of double-layer repository is analyzed from the viewpoint of the thermal constraints of the repository. The maximum peak temperature for the double-layer repository is slightly higher than that for the single-layer repository, but remains below the temperature limit

  9. Reactive transport predictions for an Olkiluoto. Final repository tunnel unit

    International Nuclear Information System (INIS)

    Luukkonen, A.; Nordman, H.

    2007-09-01

    The presented hydrogeochemical reactive transport calculations concentrate to a defined unit piece (unit cell) of the planned Olkiluoto repository that is under design for spent nuclear fuel. The material properties assigned to the tunnel unit are based on literature as far as possible. Calculations make up geochemical future scenarios on the repository evolution. Most recent predictions on the potential future climate at Olkiluoto are utilised together with estimates how future hydraulic conditions affect the repository. Two climate scenarios are considered in detail. The Weichselian-R scenario is based on the repetition of the last glacial cycle, while the Emissions-M scenario attempts to predict the future groundwater conditions at Olkiluoto in the situation where the atmospheric greenhouse gasses delay the next glacial cycle at least for 100,000 years. The groundwater compositions, considered active at the repository depth in future, are judged in this study. Several geochemical processes are considered active at the repository depth. Calculations concentrate on the changes occurring with time within the tunnel unit. All simulations are done in geochemically reducing conditions. It turns out that sulphur cycling in these conditions is in central role considering the safety assessment studies of Olkiluoto repository. Furthermore, groundwater salinity and cation occupancy within the exchange sites of montmorillonite contributes to sealing properties of the engineered barrier system. Calculations attempt to estimate effects of possible future scenarios for the Olkiluoto repository. The results indicate that the buffer capacities assigned to the tunnel unit are large enough, at least to next 100,000 years, to maintain dissolved sulphide contents low in the groundwater infiltrating through the tunnel engineered barrier system. Geochemical reactions raise the bicarbonate levels within the groundwater. This is a useful buffer if low pH conditions emerge in the

  10. A Practical Algorithm for Reconstructing Level-1 Phylogenetic Networks

    NARCIS (Netherlands)

    K.T. Huber; L.J.J. van Iersel (Leo); S.M. Kelk (Steven); R. Suchecki

    2010-01-01

    htmlabstractRecently much attention has been devoted to the construction of phylogenetic networks which generalize phylogenetic trees in order to accommodate complex evolutionary processes. Here we present an efficient, practical algorithm for reconstructing level-1 phylogenetic networks - a type of

  11. A practical algorithm for reconstructing level-1 phylogenetic networks

    NARCIS (Netherlands)

    Huber, K.T.; Iersel, van L.J.J.; Kelk, S.M.; Suchecki, R.

    2011-01-01

    Recently, much attention has been devoted to the construction of phylogenetic networks which generalize phylogenetic trees in order to accommodate complex evolutionary processes. Here, we present an efficient, practical algorithm for reconstructing level-1 phylogenetic networks-a type of network

  12. Postclosure risks of alternative SRP nuclear waste forms in geologic repositories

    International Nuclear Information System (INIS)

    Cheung, H.; Edwards, L.; Harvey, T.; Revelli, M.

    1982-05-01

    The postclosure risk of REFERENCE and ALTERNATIVE waste forms for the defense high-level waste at the Savannah River Plant (SRP) were compared by analyses with a computer code, MISER, written to study the effects of repository features in a probabilistic framework. MISER traces radionuclide flows through a network of stream tubes from the repository to risk-sensitive points. Uncertainties in waste form, package properties, and geotechnical data are accounted for with Monte Carlo techniques. Our results show: (1) for generic layered-salt and basalt repositories, the difference in performance between the two waste forms is insignificant; (2) where the doses are sensitive to uncertainties in leaching rates, the doses are orders of magnitude below background; (3) disruptive events contribute only slightly to the risk of a layered-salt repository; (4) simple design alterations have strong effects on near field doses; (5) great care should be exercised in selecting the location at which repository risks are to be measured, calculated, or regulated

  13. Multibarrier system preventing migration of radionuclides from radioactive waste repository

    Directory of Open Access Journals (Sweden)

    Olszewska Wioleta

    2015-09-01

    Full Text Available Safety of radioactive waste repositories operation is associated with a multibarrier system designed and constructed to isolate and contain the waste from the biosphere. Each of radioactive waste repositories is equipped with system of barriers, which reduces the possibility of release of radionuclides from the storage site. Safety systems may differ from each other depending on the type of repository. They consist of the natural geological barrier provided by host rocks of the repository and its surroundings, and an engineered barrier system (EBS. The EBS may itself comprise a variety of sub-systems or components, such as waste forms, canisters, buffers, backfills, seals and plugs. The EBS plays a major role in providing the required disposal system performance. It is assumed that the metal canisters and system of barriers adequately isolate waste from the biosphere. The evaluation of the multibarrier system is carried out after detailed tests to determine its parameters, and after analysis including mathematical modeling of migration of contaminants. To provide an assurance of safety of radioactive waste repository multibarrier system, detailed long term safety assessments are developed. Usually they comprise modeling of EBS stability, corrosion rate and radionuclide migration in near field in geosphere and biosphere. The principal goal of radionuclide migration modeling is assessment of the radionuclides release paths and rate from the repository, radionuclides concentration in geosphere in time and human exposure to ionizing radiation

  14. Thermo-mechanical analysis for multi-level HLW repository concept

    International Nuclear Information System (INIS)

    Kwon, Sang Ki; Choi, Jong Won

    2004-01-01

    This work aims to investigate the influence of design parameters for the underground high-level nuclear waste repository with multi-level concept. B. Necessity o In order to construct an HLW repository in deep underground, it is required to select a site, which is far from major discontinuities. To dispose the whole spent fuels generated from the Korean nuclear power plants in a repository, the underground area of about 4km 2 is required. This would be a constraints for selecting an adequate repository site. It is recommended to dispose the two different spent fuels, PWR and CANDU, in different areas at the operation efficiency point of view. It is necessary to investigate the influence of parameters, which can affect the stability of multi-level repository. It is also needed to consider the influence of heat generated from the HLW and the high in situ stress in deep location. Therefore, thermo-mechanical coupling analysis should be carried out and the results should be compared with the results from single-level repository concept. Three-dimensional analysis is required to model the disposal tunnel and deposition hole. It is recommended to use the Korean geological condition and actually measured rock properties in Korea in order to achieve reliable modeling results. A FISH routine developed for effective modeling of Thermal-Mechanical coupling was implemented in the modeling using FLAC3D, which is a commercial three-dimensional FDM code. The thermal and mechanical properties of rock and rock mass achieved from Yusung drilling site, were used for the computer modeling. Different parameters such as level distance, waste type disposed on different levels, and time interval between the operation on different levels, were considered in the three-dimensional analysis. From the analysis, it was possible to derive adequate multi-level repository concept. Results and recommendations for application From the thermal-mechanical analysis for the multi-level repository

  15. Geohydrological simulation of a deep coastal repository

    International Nuclear Information System (INIS)

    Follin, S.

    1995-12-01

    This conceptual-numerical study treats the dewatering and resaturation phases associated with the construction, use and closure of a coastal nuclear waste repository located at depth in sparsely fractured Baltic Shield rocks. The main objective is to simulate the extent and duration of saline intrusion for a reasonable set of geohydrological assumptions. Long-term changes in the chemical environment associated with saline intrusion may affect the properties of the buffer zone material (bentonite). The first part of the study deals with history matching of a simple model geometry and the second part treats the dewatering and resaturation phases of the simulated repository. The history matching supports the standpoint that the occurrence of saline ground water reflects an ongoing but incomplete Holocene flushing of the Baltic Shield. The drawdown after fifty years of dewatering is highly dependent on the permeability of the excavated damaged zone. If the permeability close the repository is unaltered the entire region between the top side of the model and the repository is more or less partially saturated at the end of the simulation period. The simulations of a fifty year long recovery period suggest that the distribution between fresh and saline ground waters may be quite close to the conditions prior to the dewatering phase already after fifty years of closure despite an incomplete pressure recovery, which is an interesting result considering the objective of the study. 12 refs

  16. Trustworthy Digital Repositories: Building Trust the Old Fashion Way, EARNING IT.

    Science.gov (United States)

    Kinkade, D.; Chandler, C. L.; Shepherd, A.; Rauch, S.; Groman, R. C.; Wiebe, P. H.; Glover, D. M.; Allison, M. D.; Copley, N. J.; Ake, H.; York, A.

    2016-12-01

    There are several drivers increasing the importance of high quality data management and curation in today's research process (e.g., OSTP PARR memo, journal publishers, funders, academic and private institutions), and proper management is necessary throughout the data lifecycle to enable reuse and reproducibility of results. Many digital data repositories are capable of satisfying the basic management needs of an investigator looking to share their data (i.e., publish data in the public domain), but repository services vary greatly and not all provide mature services that facilitate discovery, access, and reuse of research data. Domain-specific repositories play a vital role in the data curation process by working closely with investigators to create robust metadata, perform first order QC, and assemble and publish research data. In addition, they may employ technologies and services that enable increased discovery, access, and long-term archive. However, smaller domain facilities operate in varying states of capacity and curation ability. Within this repository environment, individual investigators (driven by publishers, funders, or institutions) need to find trustworthy repositories for their data; and funders need to direct investigators to quality repositories to ensure return on their investment. So, how can one determine the best home for valuable research data? Metrics can be applied to varying aspects of data curation, and many credentialing organizations offer services that assess and certify the trustworthiness of a given data management facility. Unfortunately, many of these certifications can be inaccessible to a small repository in cost, time, or scope. Are there alternatives? This presentation will discuss methods and approaches used by the Biological and Chemical Oceanography Data Management Office (BCO-DMO; a domain-specific, intermediate digital data repository) to demonstrate trustworthiness in the face of a daunting accreditation landscape.

  17. Repository Planning, Design, and Engineering: Part II-Equipment and Costing.

    Science.gov (United States)

    Baird, Phillip M; Gunter, Elaine W

    2016-08-01

    Part II of this article discusses and provides guidance on the equipment and systems necessary to operate a repository. The various types of storage equipment and monitoring and support systems are presented in detail. While the material focuses on the large repository, the requirements for a small-scale startup are also presented. Cost estimates and a cost model for establishing a repository are presented. The cost model presents an expected range of acquisition costs for the large capital items in developing a repository. A range of 5,000-7,000 ft(2) constructed has been assumed, with 50 frozen storage units, to reflect a successful operation with growth potential. No design or engineering costs, permit or regulatory costs, or smaller items such as the computers, software, furniture, phones, and barcode readers required for operations have been included.

  18. Preliminary postclosure risk assessment: Yucca Mountain, Nevada, candidate repository site

    International Nuclear Information System (INIS)

    Eslinger, P.W.; Elwood, D.M.; Freshley, M.D.; Reimus, P.W.; Tanner, J.E.; Doctor, P.G.; Engel, D.W.; Liebetrau, A.M.; Strenge, D.L.; Van Luik, A.E.

    1989-10-01

    A study was conducted by the Pacific Northwest Laboratory for the US Department of Energy, Office of Civilian Radioactive Waste Management, to estimate the postclosure risk, in terms of population health effects, of a proposed high-level nuclear waste repository at Yucca Mountain, Nevada. The risk estimates cover a time span of 1 million years following repository closure. Representative disruptive and intrusive events were selected and evaluated in addition to expected conditions. The estimates were generated assuming spent fuel as the waste form and included all important nuclides from inventory, half-life and dose perspectives. The base case results yield an estimate of 36 health effects over the first million years of repository operation. The doses attributed to the repository corresponds to about 0.1 percent of the doses received from natural background radiation. 16 refs., 1 fig

  19. Folding and unfolding phylogenetic trees and networks.

    Science.gov (United States)

    Huber, Katharina T; Moulton, Vincent; Steel, Mike; Wu, Taoyang

    2016-12-01

    Phylogenetic networks are rooted, labelled directed acyclic graphswhich are commonly used to represent reticulate evolution. There is a close relationship between phylogenetic networks and multi-labelled trees (MUL-trees). Indeed, any phylogenetic network N can be "unfolded" to obtain a MUL-tree U(N) and, conversely, a MUL-tree T can in certain circumstances be "folded" to obtain aphylogenetic network F(T) that exhibits T. In this paper, we study properties of the operations U and F in more detail. In particular, we introduce the class of stable networks, phylogenetic networks N for which F(U(N)) is isomorphic to N, characterise such networks, and show that they are related to the well-known class of tree-sibling networks. We also explore how the concept of displaying a tree in a network N can be related to displaying the tree in the MUL-tree U(N). To do this, we develop aphylogenetic analogue of graph fibrations. This allows us to view U(N) as the analogue of the universal cover of a digraph, and to establish a close connection between displaying trees in U(N) and reconciling phylogenetic trees with networks.

  20. Expert and non-expert groups perception of LILW repository site selection procedure

    International Nuclear Information System (INIS)

    Zeleznik, N.; Polic, M.

    2001-01-01

    Slovenia is now in the process of the site selection for a low and intermediate level radioactive waste (LILW) repository. Earlier searches for the LILW repository site confronted the Agency for radwaste management (ARAO) with a number of problems, mainly concerning the contacts with the local communities and their willingness to accept the repository. Therefore the Agency started with a new, so-called mixed mode approach to the site selection, where the special role of a mediator is introduced. The mediator represents the link between the investor and the local community, and facilitates the communication and negotiations between both. In this study we try to find out how people perceive the mediating process and conditions under which the LILW repository would be accepted in the local community. Therefore a special survey was conducted. The results showed some of the conditions under which participants would possibly accept the LILW repository. Differences in the perception between non-expert and expert groups were demonstrated and analysed, especially in the assessment of the consequences of LILW repository construction on the environment. Also the socio-psychological influences of the LILW repository were noted and examined. Consequences and recommendations for future work on the site selection procedure were prepared on the basis of the research results.(author)

  1. Salt Repository Project transportation system interface requirements: Transportation system/repository receiving facility interface requirements

    International Nuclear Information System (INIS)

    Smith, L.A.; Insalaco, J.W.; Trainer, T.A.

    1988-01-01

    This report is a preliminary review of the interface between the transportation system and the repository receiving facility for a nuclear waste mined geologic disposal system in salt. Criteria for generic cask and facility designs are developed. These criteria are derived by examining the interfaces that occur as a result of the operations needed to receive nuclear waste at a repository. These criteria provide the basis for design of a safe, operable, practical nuclear waste receiving facility. The processing functions required to move the shipping unit from the gate into the unloading area and back to the gate for dispatch are described. Criteria for a generic receiving facility are discussed but no specific facility design is presented or evaluated. The criteria are stated in general terms to allow application to a wide variety of cask and facility designs. 9 refs., 6 figs., 4 tabs

  2. Center for Leadership Development (CLD) Repository

    Data.gov (United States)

    Office of Personnel Management — The Center for Leadership Development Repository stores various data including policies, procedures, governance, guidance, security, and financial documents of the...

  3. Topological variation in single-gene phylogenetic trees

    OpenAIRE

    Castresana, Jose

    2007-01-01

    A recent large-scale phylogenomic study has shown the great degree of topological variation that can be found among eukaryotic phylogenetic trees constructed from single genes, highlighting the problems that can be associated with gene sampling in phylogenetic studies.

  4. The Morsleben radwaste repository. Preparing for decommissioning

    International Nuclear Information System (INIS)

    Mehnert, M.; Schmitt, R.

    2001-06-01

    The publication is intended to illustrate with a brief chronology the history and the present situation of the Morsleben radwaste repository, including specific aspects such as the geology of the site and construction and engineering activities, the particulars of waste form emplacement and log-term storage conditions, topical issues relating to radiological safety during operation and after decommissioning. The brochure is designed for the general audience interested in background information on all aspects of the uses, operation and decommissioning of a radwaste repository in Germany. (orig./CB) [de

  5. Toward a Novel Multilocus Phylogenetic Taxonomy for the Dermatophytes.

    Science.gov (United States)

    de Hoog, G Sybren; Dukik, Karolina; Monod, Michel; Packeu, Ann; Stubbe, Dirk; Hendrickx, Marijke; Kupsch, Christiane; Stielow, J Benjamin; Freeke, Joanna; Göker, Markus; Rezaei-Matehkolaei, Ali; Mirhendi, Hossein; Gräser, Yvonne

    2017-02-01

    Type and reference strains of members of the onygenalean family Arthrodermataceae have been sequenced for rDNA ITS and partial LSU, the ribosomal 60S protein, and fragments of β-tubulin and translation elongation factor 3. The resulting phylogenetic trees showed a large degree of correspondence, and topologies matched those of earlier published phylogenies demonstrating that the phylogenetic representation of dermatophytes and dermatophyte-like fungi has reached an acceptable level of stability. All trees showed Trichophyton to be polyphyletic. In the present paper, Trichophyton is restricted to mainly the derived clade, resulting in classification of nearly all anthropophilic dermatophytes in Trichophyton and Epidermophyton, along with some zoophilic species that regularly infect humans. Microsporum is restricted to some species around M. canis, while the geophilic species and zoophilic species that are more remote from the human sphere are divided over Arthroderma, Lophophyton and Nannizzia. A new genus Guarromyces is proposed for Keratinomyces ceretanicus. Thirteen new combinations are proposed; in an overview of all described species it is noted that the largest number of novelties was introduced during the decades 1920-1940, when morphological characters were used in addition to clinical features. Species are neo- or epi-typified where necessary, which was the case in Arthroderma curreyi, Epidermophyton floccosum, Lophophyton gallinae, Trichophyton equinum, T. mentagrophytes, T. quinckeanum, T. schoenleinii, T. soudanense, and T. verrucosum. In the newly proposed taxonomy, Trichophyton contains 16 species, Epidermophyton one species, Nannizzia 9 species, Microsporum 3 species, Lophophyton 1 species, Arthroderma 21 species and Ctenomyces 1 species, but more detailed studies remain needed to establish species borderlines. Each species now has a single valid name. Two new genera are introduced: Guarromyces and Paraphyton. The number of genera has increased, but

  6. Foreign materials in the repository. Update of estimated quantities

    International Nuclear Information System (INIS)

    Karvonen, T.

    2011-06-01

    A variety of materials are used during the construction process and the operation of the repository for spent nuclear fuel at Olkiluoto in Eurajoki, Finland. In addition to materials necessary for the construction and operation, some materials may be transported into the repository with the ventilation air, as emissions from vehicles etc. Both of these two types of materials are considered here and both introduced quantities and the quantities that remain after the closure in the repository are estimated here based on the most recent information. This work is intended to update the previous estimations, and it takes advantage of the experience collected during the construction of the underground rock characterisation facility called ONKALO at Olkiluoto. The implemented quantities as well as designs and preliminary designs have been used in calculating the quantities of the foreign materials. The estimations made in this report are specific to a KBS-3V type repository. In some cases more generic information has been used, particularly when the relevant quantities have not been monitored in ONKALO. The estimations are based on the new repository layout produced in 2010 and consider the latest plans for grouting and rock support. As all of these plans are not final some quantities may change in the future. As the repository layout may still go through some changes this report also provides the foreign materials for a hundred meters of different deposition tunnels designed for the OL and LO type canisters1. The results have also been calculated for a space demanded by a deposition tunnel end plug and the tunnel lengths before and after one. The most significant foreign materials are certain accessory minerals of the clay materials followed by organic materials (including the organic carbon from the clay materials), cement, steel and silica. (orig.)

  7. Layout Optimization for the Repository within a discontinuous and saturated granitic rock mass

    International Nuclear Information System (INIS)

    Kim, Jhin Wung; Choi, Jong Won; Bae, Dae Seok

    2005-12-01

    The objective of the present study is a layout optimization of a single and double layer repositories within a repository site with special joint set arrangements. Single and double layer repository models, subjected to the variation of repository depth, cavern spacing, pitch, and layer spacing, are analyzed for the thermal, hydraulic, and mechanical interaction behavior during the period of 2000 years from waste emplacement. Material properties used for the granitic rock mass, rock joints, PWR spent fuel, disposal canister, compacted bentonite, backfill material, and groundwater are the data collected domestically, and foreign data are used for some of the data not available domestically. The repository model includes a saturated granitic rock mass with joints, PWR spent fuel in a disposal canister surrounded by compacted bentonite inside a deposition hole, and backfill material in the rest of the space within a repository cavern

  8. The RAGE Game Software Components Repository for Supporting Applied Game Development

    Directory of Open Access Journals (Sweden)

    Krassen Stefanov

    2017-09-01

    Full Text Available This paper presents the architecture of the RAGE repository, which is a unique and dedicated infrastructure that provides access to a wide variety of advanced technology components for applied game development. The RAGE project, which is the principal Horizon2020 research and innovation project on applied gaming, develops up to three dozens of software components (RAGE software assets that are reusable across a wide diversity of game engines, game platforms and programming languages. The RAGE repository provides storage space for assets and their artefacts and is designed as an asset life-cycle management system for defining, publishing, updating, searching and packaging for distribution of these assets. It will be embedded in a social platform for asset developers and other users. A dedicated Asset Repository Manager provides the main functionality of the repository and its integration with other systems. Tools supporting the Asset Manager are presented and discussed. When the RAGE repository is in full operation, applied game developers will be able to easily enhance the quality of their games by including selected advanced game software assets. Making available the RAGE repository system and its variety of software assets aims to enhance the coherence and decisiveness of the applied game industry.

  9. Creating Complex Repository Collections, Such as Journals, with Manakin

    Science.gov (United States)

    Koenig, Jack; Mikeal, Adam

    2010-01-01

    Purpose: The purpose of this paper is to report on a devised method of collection organisation within a DSpace repository using a Manakin theme and descriptive metadata. Design/methodology/approach: Using a Manakin theme, a user interface for a repository collection containing the contents of a serial was created to divide the collection into…

  10. 2012 best practices for repositories collection, storage, retrieval, and distribution of biological materials for research international society for biological and environmental repositories.

    Science.gov (United States)

    2012-04-01

    Third Edition [Formula: see text] [Box: see text] Printed with permission from the International Society for Biological and Environmental Repositories (ISBER) © 2011 ISBER All Rights Reserved Editor-in-Chief Lori D. Campbell, PhD Associate Editors Fay Betsou, PhD Debra Leiolani Garcia, MPA Judith G. Giri, PhD Karen E. Pitt, PhD Rebecca S. Pugh, MS Katherine C. Sexton, MBA Amy P.N. Skubitz, PhD Stella B. Somiari, PhD Individual Contributors to the Third Edition Jonas Astrin, Susan Baker, Thomas J. Barr, Erica Benson, Mark Cada, Lori Campbell, Antonio Hugo Jose Froes Marques Campos, David Carpentieri, Omoshile Clement, Domenico Coppola, Yvonne De Souza, Paul Fearn, Kelly Feil, Debra Garcia, Judith Giri, William E. Grizzle, Kathleen Groover, Keith Harding, Edward Kaercher, Joseph Kessler, Sarah Loud, Hannah Maynor, Kevin McCluskey, Kevin Meagher, Cheryl Michels, Lisa Miranda, Judy Muller-Cohn, Rolf Muller, James O'Sullivan, Karen Pitt, Rebecca Pugh, Rivka Ravid, Katherine Sexton, Ricardo Luis A. Silva, Frank Simione, Amy Skubitz, Stella Somiari, Frans van der Horst, Gavin Welch, Andy Zaayenga 2012 Best Practices for Repositories: Collection, Storage, Retrieval and Distribution of Biological Materials for Research INTERNATIONAL SOCIETY FOR BIOLOGICAL AND ENVIRONMENTAL REPOSITORIES (ISBER) INTRODUCTION T he availability of high quality biological and environmental specimens for research purposes requires the development of standardized methods for collection, long-term storage, retrieval and distribution of specimens that will enable their future use. Sharing successful strategies for accomplishing this goal is one of the driving forces for the International Society for Biological and Environmental Repositories (ISBER). For more information about ISBER see www.isber.org . ISBER's Best Practices for Repositories (Best Practices) reflect the collective experience of its members and has received broad input from other repository professionals. Throughout this document

  11. Data Vaults: a Database Welcome to Scientific File Repositories

    NARCIS (Netherlands)

    M.G. Ivanova (Milena); Y. Kargin (Yagiz); M.L. Kersten (Martin); S. Manegold (Stefan); Y. Zhang (Ying); M. Datcu (Mihai); D. Espinoza Molina

    2013-01-01

    textabstractEfficient management and exploration of high-volume scientific file repositories have become pivotal for advancement in science. We propose to demonstrate the Data Vault, an extension of the database system architecture that transparently opens scientific file repositories for efficient

  12. Modeling transient heat transfer in nuclear waste repositories.

    Science.gov (United States)

    Yang, Shaw-Yang; Yeh, Hund-Der

    2009-09-30

    The heat of high-level nuclear waste may be generated and released from a canister at final disposal sites. The waste heat may affect the engineering properties of waste canisters, buffers, and backfill material in the emplacement tunnel and the host rock. This study addresses the problem of the heat generated from the waste canister and analyzes the heat distribution between the buffer and the host rock, which is considered as a radial two-layer heat flux problem. A conceptual model is first constructed for the heat conduction in a nuclear waste repository and then mathematical equations are formulated for modeling heat flow distribution at repository sites. The Laplace transforms are employed to develop a solution for the temperature distributions in the buffer and the host rock in the Laplace domain, which is numerically inverted to the time-domain solution using the modified Crump method. The transient temperature distributions for both the single- and multi-borehole cases are simulated in the hypothetical geological repositories of nuclear waste. The results show that the temperature distributions in the thermal field are significantly affected by the decay heat of the waste canister, the thermal properties of the buffer and the host rock, the disposal spacing, and the thickness of the host rock at a nuclear waste repository.

  13. Environmental assessment: Reference repository location, Hanford site, Washington

    Energy Technology Data Exchange (ETDEWEB)

    none,

    1986-05-01

    In February 1983, the US Department of Energy (DOE) identified a reference repository location at the Hanford Site in Washington as one of the nine potentially acceptable sites for a mined geologic repository for spent nuclear fuel and high-level radioactive waste. The site is in the Columbia Plateau, which is one of five distinct geohydrologic settings considered for the first repository. To determine their suitability, the Hanford Site and the eight other potentially acceptable sites have been evaluated in accordance with the DOE's General Guidelines for the Recommendation of Sites for the Nuclear Waste Repositories. These evaluations were reported in draft environmental assessments (EAs), which were issued for public review and comment. After considering the comments received on the draft EAs, the DOE prepared the final EAs. On the basis of the evaluations reported in this EA, the DOE has found that the Hanford site is not disqualified under the guidelines. The DOE has also found that it is suitable for site characterization because the evidence does not support a conclusion that the site will not be able to meet each of the qualifying conditions specified in the guidelines. On the basis of these findings, the DOE is nominating the Hanford site as one of five sites suitable for characterization.

  14. Environmental assessment: Reference repository location, Hanford site, Washington

    Energy Technology Data Exchange (ETDEWEB)

    none,

    1986-05-01

    In February 1983, the US Department of Energy (DOE) identified a reference repository location at the Hanford Site in Washington as one of the nine potentially acceptable sites for a mined geologic repository for spent nuclear fuel and high-level radioactive waste. The site is in the Columbia Plateau, which is one of five distinct geohydrologic settings considered for the first repository. To determine their suitability, the Hanford site and the eight other potentially acceptable sites have been evaluated in accordance with the DOE's General Guidelines for the Recommendation of Sites for the Nuclear Waste Repositories. These evaluations were reported in draft environmental assessments (EAs), which were issued for public review and comment. After considering the comments received on the draft EAs, the DOE prepared the final EAs. On the basis of the evaluations reported in this EA, the DOE has found that the Hanford site is not disqualified under the guidelines. The DOE has also found that is is suitable for site characterization because the evidence does not support a conclusion that the site will not be able to meet each of the qualifying conditions specified in the guidelines. On the basis of these findings, the DOE is nominating the Hanford site as one of five sites available for characterization.

  15. Overview of adaptive phased management repository design development

    International Nuclear Information System (INIS)

    Russell, S.

    2011-01-01

    The Nuclear Waste Management Organization is implementing Adaptive Phased Management, Canada's plan for long-term management of used nuclear fuel. The organization is proceeding with the process for selecting a site in partnership with an informed and willing host community to safely and securely container and isolate used nuclear fuel in a deep geological repository in a suitable rock formation. Adaptive Phased Management is the culmination of more than 30 years of research, development and demonstration of repository concepts in Canada. Adaptive Phased Management uses a phased and adaptive step-wise approach to the multi-barrier system which is consistent with the long-term waste management approaches being developed in many other countries with nuclear power programs such as Sweden, Finland, Switzerland, the United Kingdom and France. The Nuclear Waste Management Organization is examining and developing conceptual designs for a deep geological repository and associated facilities for the placement of used nuclear fuel in long-lived containers. This paper will examine two of these generic conceptual designs which have recently been refined and updated. These conceptual designs will be used to support a pre-project review of repository design and safety by the Canadian Nuclear Safety Commission. (author)

  16. Environmental assessment: Reference repository location, Hanford site, Washington

    International Nuclear Information System (INIS)

    1986-05-01

    In February 1983, the US Department of Energy (DOE) identified a reference repository location at the Hanford Site in Washington as one of the nine potentially acceptable sites for a mined geologic repository for spent nuclear fuel and high-level radioactive waste. The site is in the Columbia Plateau, which is one of five distinct geohydrologic settings considered for the first repository. To determine their suitability, the Hanford Site and the eight other potentially acceptable sites have been evaluated in accordance with the DOE's General Guidelines for the Recommendation of Sites for the Nuclear Waste Repositories. These evaluations were reported in draft environmental assessments (EAs), which were issued for public review and comment. After considering the comments received on the draft EAs, the DOE prepared the final EAs. On the basis of the evaluations reported in this EA, the DOE has found that the Hanford site is not disqualified under the guidelines. The DOE has also found that it is suitable for site characterization because the evidence does not support a conclusion that the site will not be able to meet each of the qualifying conditions specified in the guidelines. On the basis of these findings, the DOE is nominating the Hanford site as one of five sites suitable for characterization

  17. Environmental assessment: Reference repository location, Hanford site, Washington

    International Nuclear Information System (INIS)

    1986-05-01

    In February 1983, the US Department of Energy (DOE) identified a reference repository location at the Hanford Site in Washington as one of the nine potentially acceptable sites for a mined geologic repository for spent nuclear fuel and high-level radioactive waste. The site is in the Columbia Plateau, which is one of five distinct geohydrologic settings considered for the first repository. To determine their suitability, the Hanford site and the eight other potentially acceptable sites have been evaluated in accordance with the DOE's General Guidelines for the Recommendation of Sites for the Nuclear Waste Repositories. These evaluations were reported in draft environmental assessments (EAs), which were issued for public review and comment. After considering the comments received on the draft EAs, the DOE prepared the final EAs. On the basis of the evaluations reported in this EA, the DOE has found that the Hanford site is not disqualified under the guidelines. The DOE has also found that is is suitable for site characterization because the evidence does not support a conclusion that the site will not be able to meet each of the qualifying conditions specified in the guidelines. On the basis of these findings, the DOE is nominating the Hanford site as one of five sites available for characterization

  18. Barriers to migration of radionuclides from radioactive waste repositories

    International Nuclear Information System (INIS)

    Stefanova, I.

    1999-01-01

    Natural inorganic sorbents are known as effective barriers that reduce the migration of radionuclides from radioactive waste repositories and contaminated sites. They could be used as buffer, backfill and sealing materials in the repository and their presence in the host rock and the surrounding geological formations increases the retention properties of the strata. Natural occurring minerals from local origin are used in the study - zeolites (clinoptilolite and mordenite), celadonite and loess. Sorption of wide range of radionuclides is studies. Batch capacity is determined. Sorption of radionuclides from simulated natural solution is studied. Distribution coefficients are calculated from sorption isotherms. Desorption in presence of different natural solutions is studied. Sorption properties are compared. It is shown that clinoptilolite acts as effective barrier against migration of radionuclides from repositories. The presence of celadonite in the clinoptilolite rock increases the retention of polyvalent ions. The retention of radionuclides on loess samples fulfils the requirements for host media for repository for low and intermediate level waste. A method for construction of additional barrier to the existing in the country disposal vault for spent sealed sources is proposed

  19. Twenty years' experience with shallow ground repositories in India

    International Nuclear Information System (INIS)

    Balu, K.; Mohan, A.L.; Narayan, P.K.; Godse, V.B.; Sunder Rajan, N.S.

    1984-01-01

    With the setting up of the Bhabha Atomic Research Centre at Trombay, the first nuclear research centre in India, more than two decades ago, the need arose for disposal of the country's low-level radioactive solid wastes. Since then, nuclear power stations and other nuclear installations have been set up in different locations and the major mode of disposal for low-level solid wastes has been in engineered facilities in shallow land. The paper presents an overview of the Indian experience, with shallow land repositories for low-active solid wastes, from the point of view of design, operation and surveillance, at a number of sites. The influence of site characteristics on the design of the repository and the underground disposal modules is discussed. Details of the pre-operational investigations performed at different sites and the scheme for monitoring and surveillance of operating repositories are also included. The paper also presents briefly the type of safety analysis being carried out to evaluate possible environmental impact due to the operation of the shallow land repositories. (author)

  20. DataONE: Gateway to Earth and Environmental Data Repositories

    Science.gov (United States)

    Koskela, R.; Michener, W. K.; Vieglais, D.; Budden, A. E.

    2017-12-01

    DataONE (Data Observation Network for Earth) is a National Science Foundation DataNet project that enables universal access to data and also facilitates researchers in fulfilling their need for data management and in providing secure and permanent access to their data. DataONE offers the scientific community a suite of tools and training materials that cover all aspects of the data life cycle from data collection, to management, analysis and publication. Data repositories affiliated with DataONE are referred to as Member Nodes and represent large regional, national and international research networks, agencies, and other institutions. As part of the DataONE Federation, the repositories gain access to a range of value-added services to support their users. These services include usage tracking and reporting, content replication, and the ability to register the services created by the repository. In addition, DataONE and the California Digital Library manage ONEShare, a repository that accepts content submitted through Dash, a platform allowing researchers to easily describe, deposit and share their research data.

  1. Audit and Certification Process for Science Data Digital Repositories

    Science.gov (United States)

    Hughes, J. S.; Giaretta, D.; Ambacher, B.; Ashley, K.; Conrad, M.; Downs, R. R.; Garrett, J.; Guercio, M.; Lambert, S.; Longstreth, T.; Sawyer, D. M.; Sierman, B.; Tibbo, H.; Waltz, M.

    2011-12-01

    Science data digital repositories are entrusted to ensure that a science community's data are available and useful to users both today and in the future. Part of the challenge in meeting this responsibility is identifying the standards, policies and procedures required to accomplish effective data preservation. Subsequently a repository should be evaluated on whether or not they are effective in their data preservation efforts. This poster will outline the process by which digital repositories are being formally evaluated in terms of their ability to preserve the digitally encoded information with which they have been entrusted. The ISO standards on which this is based will be identified and the relationship of these standards to the Open Archive Information System (OAIS) reference model will be shown. Six test audits have been conducted with three repositories in Europe and three in the USA. Some of the major lessons learned from these test audits will be briefly described. An assessment of the possible impact of this type of audit and certification on the practice of preserving digital information will also be provided.

  2. Geoelectric monitoring of bentonite barrier resaturation in the Aespoeprototype repository. Final report

    Energy Technology Data Exchange (ETDEWEB)

    Wieczorek, Klaus; Komischke, Michael; Miehe, Ruediger; Moog, Helge

    2014-10-15

    In 1994, SKB started constructing the ''Prototype Repository'', a full-scale replica of a part of a future KBS-3 repository in crystalline rock, at the AespoeHard Rock Laboratory. Six emplacement boreholes were planned and constructed in two tunnel sections until end of 1999. The international EC co-funded Prototype Repository project was started in 2000 (contract FIKW-CT-2000-00055). The project partners were SKB (Sweden), POSIVA (Finland), ENRESA (Spain), GRS (Germany), BGR (Germany), UWC (UK), and JNC (Japan). Between 2000 and 2003 the complete Prototype Repository was equipped and instrumented, and monitoring was started. In February 2004 the EC funding expired. The Prototype Repository project was continued with national funding of the project partners. In 2011, dismantling of Section II was started in a three-year project. Backfill, buffer and canisters as well as part of the instrumentation were retrieved, and numerous laboratory investigations on buffer and backfill samples were performed. GRS' part in the Prototype Repository was the monitoring of backfill and buffer resaturation using geoelectric tomography. The measurements were completed in 2013.

  3. Sequence comparison and phylogenetic analysis of core gene of ...

    African Journals Online (AJOL)

    Phylogenetic analysis suggests that our sequences are clustered with sequences reported from Japan. This is the first phylogenetic analysis of HCV core gene from Pakistani population. Our sequences and sequences from Japan are grouped into same cluster in the phylogenetic tree. Sequence comparison and ...

  4. PhyDesign: an online application for profiling phylogenetic informativeness

    Directory of Open Access Journals (Sweden)

    Townsend Jeffrey P

    2011-05-01

    Full Text Available Abstract Background The rapid increase in number of sequenced genomes for species across of the tree of life is revealing a diverse suite of orthologous genes that could potentially be employed to inform molecular phylogenetic studies that encompass broader taxonomic sampling. Optimal usage of this diversity of loci requires user-friendly tools to facilitate widespread cost-effective locus prioritization for phylogenetic sampling. The Townsend (2007 phylogenetic informativeness provides a unique empirical metric for guiding marker selection. However, no software or automated methodology to evaluate sequence alignments and estimate the phylogenetic informativeness metric has been available. Results Here, we present PhyDesign, a platform-independent online application that implements the Townsend (2007 phylogenetic informativeness analysis, providing a quantitative prediction of the utility of loci to solve specific phylogenetic questions. An easy-to-use interface facilitates uploading of alignments and ultrametric trees to calculate and depict profiles of informativeness over specified time ranges, and provides rankings of locus prioritization for epochs of interest. Conclusions By providing these profiles, PhyDesign facilitates locus prioritization increasing the efficiency of sequencing for phylogenetic purposes compared to traditional studies with more laborious and low capacity screening methods, as well as increasing the accuracy of phylogenetic studies. Together with a manual and sample files, the application is freely accessible at http://phydesign.townsend.yale.edu.

  5. Towards a Swedish repository for spent fuel

    International Nuclear Information System (INIS)

    Ahlstroem, P.-E.

    1997-01-01

    Nuclear power is producing electricity for the benefit of society but is also leaving radioactive residues behind. It is our responsibility to handle these residues in a safe and proper manner. The development of a system for handling spent fuel from nuclear power plants has proceeded in steps. The same is true for the actual construction of facilities and will continue to be the case for the final repository for spent fuel and other types of long-lived wastes. The primary objective in constructing the repository will be to isolate and contain the radioactive waste. In case the isolation fails for some reason the multibarrier system should retain and retard the radionuclides that might come into contact with the groundwater. A repository is now planned to be built in two steps where the first step will include deposition of about 400 canisters with spent fuel. This first step should be finished in about 20 years from now and be followed by an extensive evaluation of the results from not only this particular step but also from the development of alternative routes before deciding on how to proceed. A special facility to encapsulate the spent fuel is also required. Such an encapsulation plant is proposed to be constructed as an extension of the existing interim storage CLAB. Finding a site for the repository is a critical issue in the implementation of any repository. The siting process started a few years ago and made some progress but is by no means yet completed. It will go on at least into the early part of the next decade. When the present nuclear power plants begin to be due for retirement there should also be some facilities in place to take permanent care of the long-lived radioactive residues. Progress in siting will be a prerequisite for success in our responsibility to make progress towards a safe permanent solution of the waste issue. (orig.)

  6. Distributed Repositories for Educational Content - Part 2: Technology

    Directory of Open Access Journals (Sweden)

    Christian Lukaschik

    2011-07-01

    Full Text Available In Part 1 of this article we discussed the need for information quality and the systematic management of learning materials and learning arrangements. Digital repositories, often called Learning Object Repositories (LOR, were introduced as a promising answer to this challenge. We also derived technological and pedagogical requirements for LORs from a concretization of information quality criteria for e-learning technology. This second part presents technical solutions that particularly address the demands of open education movements, which aspire to a global reuse and sharing culture. From this viewpoint, we develop core requirements for scalable network architectures for educational content management. We then present edu-sharing, an advanced example of a network of homogeneous repositories for learning resources, and discuss related technology. We conclude with an outlook in terms of emerging developments towards open and networked system architectures in e-learning.

  7. Coupled processes in repository sealing

    International Nuclear Information System (INIS)

    Case, J.B.; Kelsall, P.C.

    1985-01-01

    The significance of coupled processes in repository sealing is evaluated. In most repository designs, shaft seals will be located in areas of relatively low temperature perturbation, in which case the coupling of temperature with stress and permeability may be less significant than the coupling between stress and permeability that occurs during excavation. Constitutive relationships between stress and permeability are reviewed for crystalline rock and rocksalt. These provide a basis for predicting the development of disturbed zones near excavations. Field case histories of the degree of disturbance are presented for two contrasting rock types - Stripa granite and Southeastern New Mexico rocksalt. The results of field investigations in both rock types confirm that hydraulic conductivity or permeability is stress dependent, and that shaft seal performance may be related to the degree that stresses are perturbed and restored near the seal

  8. The Pangea concept for an international radioactive waste repository

    International Nuclear Information System (INIS)

    Kurzeme, M.

    1999-01-01

    Pangea Resources Australia Pty. Ltd. is engaged in a study to investigate the feasibility of constructing and operating an international radioactive waste repository in Australia. Western Australia in particular has a unique combination of geology, topography and climate which makes it eminently suitable for a deep geological repository for the safe and permanent disposal of radioactive waste. Australia also has the political, social, legal and financial systems, together with the technical capability to make it acceptable as a host nation for an international repository. This paper reviews the origins of the Pangea concept, describes the high isolation approach to site selection, the Pangea integrated waste management system, together with its potential economic impact on Australia

  9. Largest known Mesozoic multituberculate from Eurasia and implications for multituberculate evolution and biology.

    Science.gov (United States)

    Xu, Li; Zhang, Xingliao; Pu, Hanyong; Jia, Songhai; Zhang, Jiming; Lü, Junchang; Meng, Jin

    2015-10-22

    A new multituberculate, Yubaartar zhongyuanensis gen. and sp. nov., is reported from the Upper Cretaceous of Luanchuan County, Henan Province, China. The holotype of the new taxon is a partial skeleton with nearly complete cranium and associated lower jaws with in situ dentitions. The new species is the southern-most record of a Late Cretaceous multituberculate from outside of the Mongolian Plateau in Asia and represents the largest known Mesozoic multituberculate from Eurasia. The new specimen displays some intriguing features previously unknown in multituberculates, such as the first evidence of replacement of the ultimate upper premolar and a unique paleopathological case in Mesozoic mammals in which the animal with a severely broken right tibia could heal and survive in natural condition. The phylogenetic analysis based on craniodental characters places Yubaartar as the immediate outgroup of Taeniolabidoidea, a group consisting of a North American clade and an Asian clade. This relationship indicates at least a faunal interchange of multituberculates before the K-Pg transition. The new evidence further supports the hypothesis that disparity in dental complexity, which relates to animal diets, increased with generic richness and disparity in body size, and that an adaptive shift towards increased herbivory across the K-Pg transitional interval.

  10. Towards Establishing an Open Access Repository of Indian Publications in Astronomy -- a Case Study of Indian Institute of Astrophysics Repository

    Science.gov (United States)

    Birdie, C.; Vagiswari, A.

    2007-10-01

    The continued escalation of journal prices, and inadequate access to scholarly journals along with a consistent reduction in library resources and the advent of new technologies have all contributed to a change in the present scholarly communication. The initiative towards establishing Open Access communication has been advocated among scholars and researchers. An Institutional Archive for holding pre- and post-prints of articles written by academic and research staff increases the accessibility, visibility and impact of research output. The Indian Institute of Astrophysics (IIA) is one of the astronomical research institutes in India pioneering the Open Access movement. The institute has set up a pilot project to store the institute's publications in an institutional repository (IR). The library at IIA plays an important role in setting up this archive. While the authors and publishers are the key players in this endeavor, the role of librarians needs to be redefined in the present paradigm shift of publishing. When the Institutes decide to develop their own repositories, the skills and expertise of librarians are needed to design, develop, manage and maintain a successful repository. These and the knowledge of copyright issues relevant to the digital content of IRs are highlighted in this paper. This paper also discusses the various opportunities and tools available for librarians to learn the procedures and involve themselves in establishing their institutional repositories.

  11. NASA Biological Specimen Repository

    Science.gov (United States)

    McMonigal, K. A.; Pietrzyk, R. A.; Sams, C. F.; Johnson, M. A.

    2010-01-01

    The NASA Biological Specimen Repository (NBSR) was established in 2006 to collect, process, preserve and distribute spaceflight-related biological specimens from long duration ISS astronauts. This repository provides unique opportunities to study longitudinal changes in human physiology spanning may missions. The NBSR collects blood and urine samples from all participating ISS crewmembers who have provided informed consent. These biological samples are collected once before flight, during flight scheduled on flight days 15, 30, 60, 120 and within 2 weeks of landing. Postflight sessions are conducted 3 and 30 days after landing. The number of in-flight sessions is dependent on the duration of the mission. Specimens are maintained under optimal storage conditions in a manner that will maximize their integrity and viability for future research The repository operates under the authority of the NASA/JSC Committee for the Protection of Human Subjects to support scientific discovery that contributes to our fundamental knowledge in the area of human physiological changes and adaptation to a microgravity environment. The NBSR will institute guidelines for the solicitation, review and sample distribution process through establishment of the NBSR Advisory Board. The Advisory Board will be composed of representatives of all participating space agencies to evaluate each request from investigators for use of the samples. This process will be consistent with ethical principles, protection of crewmember confidentiality, prevailing laws and regulations, intellectual property policies, and consent form language. Operations supporting the NBSR are scheduled to continue until the end of U.S. presence on the ISS. Sample distribution is proposed to begin with selections on investigations beginning in 2017. The availability of the NBSR will contribute to the body of knowledge about the diverse factors of spaceflight on human physiology.

  12. Geological study of radioactive waste repositories

    International Nuclear Information System (INIS)

    Oyama, Takahiro; Kitano, Koichi

    1987-01-01

    The investigation of the stability and the barrier efficiency of the deep underground radioactive waste repositories become a subject of great concern. The purpose of this paper is to gather informations on the geology, engineering geology and hydrogeology in deep galleries in Japan. Conclusion can be summarised as follows: (1) The geological structure of deep underground is complicated. (2) Stress in deep underground is greatly affected by crustal movement. (3) Rock-burst phenomena occur in the deep underground excavations. (4) In spite of deep underground, water occasionally gush out from the fractured zone of rock mass. These conclusion will be useful for feasibility study of underground waste disposal and repositories in Japan. (author)

  13. Thermal Management and Analysis for a Potential Yucca Mountain Repository

    International Nuclear Information System (INIS)

    Dr. A. Van Luik

    2004-01-01

    In the current Yucca Mountain repository design concept, heat from the emplaced waste (mostly from spent nuclear fuel) would keep the temperature of the rock around the waste packages higher than the boiling point of water for hundreds to thousands of years after the repository is closed. The design concept allows below-boiling portions of the pillars between drifts to serve as pathways for the drainage of thermally mobilized water and percolating groundwater by limiting the distance that boiling temperatures extend into the surrounding rock. This design concept takes advantage of host rock dry out, which would create a dry environment within the emplacement drifts and reduce the amount of water that might otherwise be available to enter the drifts and contact the waste packages during this thermal pulse. Table 1 provides an overview of design constraints related to thermal management after repository closure. The Yucca Mountain repository design concept also provides flexibility to allow for operation over a range of lower thermal operating conditions. The thermal conditions within the emplacement drifts can be varied, along with the relative humidity, by modifying operational parameters such as the thermal output of the waste packages, the spacing of the waste packages in the emplacement drifts, and the duration and rate of active and passive ventilation. A lower range has been examined to quantify lower-temperature thermal conditions (temperatures and associated humidity conditions) in the emplacement drifts and to quantify impacts to the required emplacement area and excavated drift length. This information has been used to evaluate the potential long-term performance of a lower-temperature repository and to estimate the increase in costs associated with operating a lower-temperature repository. This presentation provides an overview of the thermal management evaluations that have been conducted to investigate a range of repository thermal conditions and

  14. Predicting rates of interspecific interaction from phylogenetic trees.

    Science.gov (United States)

    Nuismer, Scott L; Harmon, Luke J

    2015-01-01

    Integrating phylogenetic information can potentially improve our ability to explain species' traits, patterns of community assembly, the network structure of communities, and ecosystem function. In this study, we use mathematical models to explore the ecological and evolutionary factors that modulate the explanatory power of phylogenetic information for communities of species that interact within a single trophic level. We find that phylogenetic relationships among species can influence trait evolution and rates of interaction among species, but only under particular models of species interaction. For example, when interactions within communities are mediated by a mechanism of phenotype matching, phylogenetic trees make specific predictions about trait evolution and rates of interaction. In contrast, if interactions within a community depend on a mechanism of phenotype differences, phylogenetic information has little, if any, predictive power for trait evolution and interaction rate. Together, these results make clear and testable predictions for when and how evolutionary history is expected to influence contemporary rates of species interaction. © 2014 John Wiley & Sons Ltd/CNRS.

  15. Phylogenetic Structure of Foliar Spectral Traits in Tropical Forest Canopies

    Directory of Open Access Journals (Sweden)

    Kelly M. McManus

    2016-02-01

    Full Text Available The Spectranomics approach to tropical forest remote sensing has established a link between foliar reflectance spectra and the phylogenetic composition of tropical canopy tree communities vis-à-vis the taxonomic organization of biochemical trait variation. However, a direct relationship between phylogenetic affiliation and foliar reflectance spectra of species has not been established. We sought to develop this relationship by quantifying the extent to which underlying patterns of phylogenetic structure drive interspecific variation among foliar reflectance spectra within three Neotropical canopy tree communities with varying levels of soil fertility. We interpreted the resulting spectral patterns of phylogenetic signal in the context of foliar biochemical traits that may contribute to the spectral-phylogenetic link. We utilized a multi-model ensemble to elucidate trait-spectral relationships, and quantified phylogenetic signal for spectral wavelengths and traits using Pagel’s lambda statistic. Foliar reflectance spectra showed evidence of phylogenetic influence primarily within the visible and shortwave infrared spectral regions. These regions were also selected by the multi-model ensemble as those most important to the quantitative prediction of several foliar biochemical traits. Patterns of phylogenetic organization of spectra and traits varied across sites and with soil fertility, indicative of the complex interactions between the environmental and phylogenetic controls underlying patterns of biodiversity.

  16. Object linking in repositories

    Science.gov (United States)

    Eichmann, David (Editor); Beck, Jon; Atkins, John; Bailey, Bill

    1992-01-01

    This topic is covered in three sections. The first section explores some of the architectural ramifications of extending the Eichmann/Atkins lattice-based classification scheme to encompass the assets of the full life cycle of software development. A model is considered that provides explicit links between objects in addition to the edges connecting classification vertices in the standard lattice. The second section gives a description of the efforts to implement the repository architecture using a commercially available object-oriented database management system. Some of the features of this implementation are described, and some of the next steps to be taken to produce a working prototype of the repository are pointed out. In the final section, it is argued that design and instantiation of reusable components have competing criteria (design-for-reuse strives for generality, design-with-reuse strives for specificity) and that providing mechanisms for each can be complementary rather than antagonistic. In particular, it is demonstrated how program slicing techniques can be applied to customization of reusable components.

  17. Corrosion phase formation on container alloys in basalt repository environments

    International Nuclear Information System (INIS)

    Johnston, R.G.; Anantatmula, R.P.; Lutton, J.M.; Rivera, C.L.

    1986-01-01

    The Basalt Waste Isolation Project is evaluating the suitability of basalt in southeastern Washington State as a possible location for a nuclear waste repository. The performance of the waste package, which includes the waste form, container, and surrounding packing material, will be affected by the stability of container alloys in the repository environment. Primary corrosion phases and altered packing material containing metals leached from the container may also influence subsequent reactions between the waste form and repository environment. Copper- and iron-based alloys were tested at 50 0 to 300 0 C in an air/steam environment and in pressure vessels in ground-water-saturated basalt-bentonite packing material. Reaction phases formed on the alloys were identified and corrosion rates were measured. Changes in adhering packing material were also evaluated. The observed reactions and their possible effects on container alloy durability in the repository are discussed

  18. Spent nuclear fuel for disposal in the KBS-3 repository

    Energy Technology Data Exchange (ETDEWEB)

    Grahn, Per; Moren, Lena; Wiborgh, Maria

    2010-12-15

    The report is included in a set of Production reports, presenting how the KBS-3 repository is designed, produced and inspected. The set of reports is included in the safety report for the KBS-3 repository and repository facility. The report provides input to the assessment of the long-term safety, SR-Site as well as to the operational safety report, SR-Operation. The report presents the spent fuel to be deposited, and the requirements on the handling and selection of fuel assemblies for encapsulation that follows from that it shall be deposited in the KBS-3 repository. An overview of the handling and a simulation of the encapsulation and the resulting canisters to be deposited are presented. Finally, the initial state of the encapsulated spent nuclear fuel is given. The initial state comprises the radionuclide inventory and other data required for the assessment of the long-term safety

  19. Spent nuclear fuel for disposal in the KBS-3 repository

    International Nuclear Information System (INIS)

    Grahn, Per; Moren, Lena; Wiborgh, Maria

    2010-12-01

    The report is included in a set of Production reports, presenting how the KBS-3 repository is designed, produced and inspected. The set of reports is included in the safety report for the KBS-3 repository and repository facility. The report provides input to the assessment of the long-term safety, SR-Site as well as to the operational safety report, SR-Operation. The report presents the spent fuel to be deposited, and the requirements on the handling and selection of fuel assemblies for encapsulation that follows from that it shall be deposited in the KBS-3 repository. An overview of the handling and a simulation of the encapsulation and the resulting canisters to be deposited are presented. Finally, the initial state of the encapsulated spent nuclear fuel is given. The initial state comprises the radionuclide inventory and other data required for the assessment of the long-term safety

  20. The use of uranium fluxes as safety indicators of radioactive waste repositories

    International Nuclear Information System (INIS)

    Miller, W.M.; Hooker, P.J.

    2002-01-01

    Natural analogues based on uranium deposits are commonly used to represent the long-term behaviour of radioactive waste repositories or the processes that influence their radioactive contents. The geochemical dispersion of naturally occurring uranium can also be used to model natural radioactivity fluxes in the vicinity of a planned repository. These fluxes can be estimated for erosional and groundwater discharge processes and compared with calculated future fluxes of radioactivity that would be released from a repository. The methodology is outlined and the benefits of the approach for supporting the derivation of a safety case for a repository are indicated. (author)