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Sample records for kotljarov artur jgi

  1. Fraternitas ja vendlus / Artur Taska

    Index Scriptorium Estoniae

    Taska, Artur, 1912-1994

    1981-01-01

    Sõnade "frater" ja "fraternitas" ajaloost ning nendega seotud mõistetest Tartu Ülikooli juures tegutsenud üliõpilasorganisatsioonides. Ilmunud ka: Taska, Artur. Mõtteid maisel matkal. Lund, 1990, lk. 58-66

  2. JGI Fungal Genomics Program

    Energy Technology Data Exchange (ETDEWEB)

    Grigoriev, Igor V.

    2011-03-14

    Genomes of energy and environment fungi are in focus of the Fungal Genomic Program at the US Department of Energy Joint Genome Institute (JGI). Its key project, the Genomics Encyclopedia of Fungi, targets fungi related to plant health (symbionts, pathogens, and biocontrol agents) and biorefinery processes (cellulose degradation, sugar fermentation, industrial hosts), and explores fungal diversity by means of genome sequencing and analysis. Over 50 fungal genomes have been sequenced by JGI to date and released through MycoCosm (www.jgi.doe.gov/fungi), a fungal web-portal, which integrates sequence and functional data with genome analysis tools for user community. Sequence analysis supported by functional genomics leads to developing parts list for complex systems ranging from ecosystems of biofuel crops to biorefineries. Recent examples of such 'parts' suggested by comparative genomics and functional analysis in these areas are presented here

  3. Genome Improvement at JGI-HAGSC

    Energy Technology Data Exchange (ETDEWEB)

    Grimwood, Jane; Schmutz, Jeremy J.; Myers, Richard M.

    2012-03-03

    Since the completion of the sequencing of the human genome, the Joint Genome Institute (JGI) has rapidly expanded its scientific goals in several DOE mission-relevant areas. At the JGI-HAGSC, we have kept pace with this rapid expansion of projects with our focus on assessing, assembling, improving and finishing eukaryotic whole genome shotgun (WGS) projects for which the shotgun sequence is generated at the Production Genomic Facility (JGI-PGF). We follow this by combining the draft WGS with genomic resources generated at JGI-HAGSC or in collaborator laboratories (including BAC end sequences, genetic maps and FLcDNA sequences) to produce an improved draft sequence. For eukaryotic genomes important to the DOE mission, we then add further information from directed experiments to produce reference genomic sequences that are publicly available for any scientific researcher. Also, we have continued our program for producing BAC-based finished sequence, both for adding information to JGI genome projects and for small BAC-based sequencing projects proposed through any of the JGI sequencing programs. We have now built our computational expertise in WGS assembly and analysis and have moved eukaryotic genome assembly from the JGI-PGF to JGI-HAGSC. We have concentrated our assembly development work on large plant genomes and complex fungal and algal genomes.

  4. Fyzik, filozof a kněz Artur Pavelka

    Czech Academy of Sciences Publication Activity Database

    Těšínská, Emilie; Fischer, Jan; Dvořák, Jiří

    2013-01-01

    Roč. 63, č. 2 (2013), s. 128-136 ISSN 0009-0700 Institutional support: RVO:68378114 ; RVO:68378271 Keywords : history of physics * Artur Pavelka (1903-1997) * physics and religion Subject RIV: AB - History

  5. JGI Plant Genomics Gene Annotation Pipeline

    Energy Technology Data Exchange (ETDEWEB)

    Shu, Shengqiang; Rokhsar, Dan; Goodstein, David; Hayes, David; Mitros, Therese

    2014-07-14

    Plant genomes vary in size and are highly complex with a high amount of repeats, genome duplication and tandem duplication. Gene encodes a wealth of information useful in studying organism and it is critical to have high quality and stable gene annotation. Thanks to advancement of sequencing technology, many plant species genomes have been sequenced and transcriptomes are also sequenced. To use these vastly large amounts of sequence data to make gene annotation or re-annotation in a timely fashion, an automatic pipeline is needed. JGI plant genomics gene annotation pipeline, called integrated gene call (IGC), is our effort toward this aim with aid of a RNA-seq transcriptome assembly pipeline. It utilizes several gene predictors based on homolog peptides and transcript ORFs. See Methods for detail. Here we present genome annotation of JGI flagship green plants produced by this pipeline plus Arabidopsis and rice except for chlamy which is done by a third party. The genome annotations of these species and others are used in our gene family build pipeline and accessible via JGI Phytozome portal whose URL and front page snapshot are shown below.

  6. Introduction to Metagenomics at DOE JGI (Opening Remarks for the Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)

    Energy Technology Data Exchange (ETDEWEB)

    Kyrpides, Nikos [DOE JGI

    2011-10-12

    After a quick introduction by DOE JGI Director Eddy Rubin, DOE JGI's Nikos Kyrpides delivers the opening remarks at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011

  7. Artur Lemba - tunglakandja : Ühe suurmehe metaelulugu / Ene Metsjärv ; intervjueerinud Marju Riisikamp

    Index Scriptorium Estoniae

    Metsjärv, Ene, 1943-

    2014-01-01

    Pianist, helilooja ja pedagoog Artur Lemba elust ja loometööst. A. Lemba õpilaste Veera Lensini, Salme Lohuaru (kuni 1950 Andre), Valentine Riivese, Tiiu Targamaa, Villem Reimanni ja Elsa Avessoni ülestähendusi oma õpetajast

  8. Lemba, Artur: Concerto for piano no. 1 in G / Guy S. Rickards

    Index Scriptorium Estoniae

    Rickards, Guy S.

    1998-01-01

    Uuest heliplaadist "Lemba, Artur: Concerto for piano no. 1 in G; Tubin, Eduard: Concertino forpiano and orchestra; Sumera, Lepo: Concerto for piano and orchestra. Lauri Väinmaa, piano, Estonian National Symphony Orchestra, Arvo Volmer". Finlandia 3984-20684-2

  9. Tartu Ülikooli Õigusteaduskonna kogu viimase koosseisu saatusest / Artur Taska

    Index Scriptorium Estoniae

    Taska, Artur, 1912-1994

    1989-01-01

    Sisaldab andmeid Ants Piibu, D. Grimmi, I. Tjutrjumovi, Artur-Tõeleid Kliimanni, Ernst Eini, Nikolai Maimi, Mart Nurga, Jüri Uluotsa, Elmar Ilusa, H. Kadari, L. Leesmenti, Juhan Vaabeli, Richard, Räägo, Otto Liivi, Hans Ronimoisi, T. Grünthali, Veera Poska-Grünthali, Artur Mägi, F. Malmi, G. Rooksi, Valmar Adamsi, Paul Vihalema, Rein Eliaseri, A. Rammuli, H. Randalu, Edgar Talviku, A. Perandi ja Väino Langi kohta

  10. Metagenome Assembly at the DOE JGI (Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)

    Energy Technology Data Exchange (ETDEWEB)

    Chain, Patrick

    2011-10-13

    Patrick Chain of DOE JGI at LANL, Co-Chair of the Metagenome-specific Assembly session, on Metagenome Assembly at the DOE JGIat the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

  11. A Collection of Algal Genomes from the JGI

    Energy Technology Data Exchange (ETDEWEB)

    Kuo, Alan; Grigoriev, Igor

    2012-03-19

    Algae, defined as photosynthetic eukaryotes other than plants, constitute a major component of fundamental eukaryotic diversity. Acquisition of the ability to conduct oxygenic photosynthesis through endosymbiotic events has been a principal driver of eukaryotic evolution, and today algae continue to underpin aquatic food chains as primary producers. Algae play profound roles in the carbon cycle, can impose health and economic costs through toxic blooms, and are candidate sources for bio-fuels; all of these research areas are part of the mission of DOE?s Joint Genome Institute (JGI). A collection of algal projects ongoing at JGI contributes to each of these areas and illustrates analyses employed in their genome exploration.

  12. Eestlane kamandab Venemaal 400 alluvaga tanklaketti / Artur Praun ; interv. Raigo Neudorf

    Index Scriptorium Estoniae

    Praun, Artur, 1973-

    2005-01-01

    LLC Neste St. Petersburgi jaemüügi direktor selgitab, miks ta nõustus ettevõtte poolt tehtud pakkumisega asuda tööle Venemaale, annab ülevaate oma tööülesannetest ja ettevõtte plaanidest Peterburi turul ning iseloomustab vene kultuuri- ja äriruumi. Lisa: Artur Prauni karjäär Nestes

  13. Pozovi menja tihho po imeni / Artur Pärnoja ; interv. Jevgeni Kapov

    Index Scriptorium Estoniae

    Pärnoja, Artur

    2004-01-01

    Narvas filmis vene telekanali ORT võttegrupp seriaali "Tappev jõud" ("Uboinaja sila") järjekordse osa "Relvavendlus" ("Bratstvo po oruzhiju") Eestiga seotud episoode. Filmist ja selle aluseks olnud tõeliselt asetleinud sündmustest jutustab filmi konsultant Artur Pärnoja. Vene Teatri näitleja Kirill Käro räägib oma tööst selles filmis

  14. Peipsiäärne Šotimaa / Artur Ümar

    Index Scriptorium Estoniae

    Ümar, Artur

    2007-01-01

    Restauraator Artur Ümar mõisate taaselustamisest Alatskivi lossi (1885) näitel. Restaureerimistööd toimusid 2005. a. veebruarist septembrini. Projekteerija: ARC Projekt, restaureerimistööd viis läbi AS Eviko. Pikemalt salong-kaminasaalist, söögisaalist ja ballisaalist. Alatskivi vallavolikogu kiitis heaks lossi rendikonkursil ainsana osalenud Rein Kilgi firma OÜ Elikante pakkumise. 2 välis- ja 13 sisevaadet

  15. Frakiga dirigendist värske road-movie peategelaseks / Artur Talvik, Priit Valkna ; interv. Mihkel Niglas

    Index Scriptorium Estoniae

    Talvik, Artur, 1964-

    2007-01-01

    Dokumentaalfilm "Vastutuulesaal" Tõnu Kaljuste poolt Naissaarele Nargen Opera saali ehitamisest. Produtsent ja idee autor Artur Talvik, režissöör Priit Valkna räägivad filmi saamisloost. Lisaks "Teised Tõnu Kaljustest" : Arvo Aun ja Allan Vurma

  16. DOE JGI Quality Metrics; Approaches to Scaling and Improving Metagenome Assembly (Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)

    Energy Technology Data Exchange (ETDEWEB)

    Copeland, Alex; Brown, C. Titus

    2011-10-13

    DOE JGI's Alex Copeland on "DOE JGI Quality Metrics" and Michigan State University's C. Titus Brown on "Approaches to Scaling and Improving Metagenome Assembly" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

  17. A discussion of Filozofia Leśmiana by Artur Sandauer

    Directory of Open Access Journals (Sweden)

    Małgorzata Gorczyńska

    2016-03-01

    Full Text Available The article is dedicated to the literary criticism of Filozofia Leśmiana Eksperyment krytyczny (1946, a literary sketch by Artur Sandauer. The discussion continued throughout the second half of the 1940s, the late 1950s and the early 1960s in “Kuźnica”, “Odrodzenie”, “Dziś i Jutro”, “Twórczość” and “Życie Literackie” and involved Poland’s major literary critics and literary researchers. The author of the article presents the personal and environmental contexts of the polemics, shows the diverse subjects, analyses the employed rhetorical strategies and ponders the impact of the discussion on the literature of the first two post-war decades.

  18. Genomics on the Half Shell: So, What do Oysters Have to do with Energy? (2010 JGI User Meeting)

    Energy Technology Data Exchange (ETDEWEB)

    Hedgecock, Dennis

    2010-03-24

    Dennis Hedgecock from the University of Southern California answers the question, "Genomics on the Half Shell: So, What Do Oysters Have to Do with Energy?" on March 24, 2010 at the 5th Annual DOE JGI User Meeting.

  19. 10-Year Strategic Vision: Forging the Future of the DOE JGI

    Energy Technology Data Exchange (ETDEWEB)

    None

    2012-09-01

    Dramatic technological advances in genomics continue to transform modern biology. The DOE Joint Genome Institute (DOE JGI) has been at the leading edge of large-scale sequence-based science from its inception. Presently our ability to generate genomic data greatly outpaces our capacity to convert these data into biological insights. Bridging the gap between a sequenced genome and understanding of organism-scale functions is a significant unsolved problem in modern biology. Consequently, as the DOE JGI plans for its future, a major objective is to couple the generation of sequence data with the development of new large-scale experimental and computational capabilities to functionally annotate DNA sequences, thereby narrowing the gap between generation and interpretation of sequence data.

  20. The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).

    Science.gov (United States)

    Huntemann, Marcel; Ivanova, Natalia N; Mavromatis, Konstantinos; Tripp, H James; Paez-Espino, David; Palaniappan, Krishnaveni; Szeto, Ernest; Pillay, Manoj; Chen, I-Min A; Pati, Amrita; Nielsen, Torben; Markowitz, Victor M; Kyrpides, Nikos C

    2015-01-01

    The DOE-JGI Microbial Genome Annotation Pipeline performs structural and functional annotation of microbial genomes that are further included into the Integrated Microbial Genome comparative analysis system. MGAP is applied to assembled nucleotide sequence datasets that are provided via the IMG submission site. Dataset submission for annotation first requires project and associated metadata description in GOLD. The MGAP sequence data processing consists of feature prediction including identification of protein-coding genes, non-coding RNAs and regulatory RNA features, as well as CRISPR elements. Structural annotation is followed by assignment of protein product names and functions.

  1. Introduction to Metagenomics at DOE JGI: Program Overview and Program Informatics (Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)

    Energy Technology Data Exchange (ETDEWEB)

    Tringe, Susannah

    2011-10-12

    Susannah Tringe of the DOE Joint Genome Institute talks about the Program Overview and Program Informatics at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

  2. Muusika : Hortus Musicus Moskvas. Eesti Rahvusmeeskoor Toulouse'is. Joaquín Rodrigo 100. Georg Ots kuuel plaadil. "Kiriku laulu- ja palveraamat" ئ 10. "Vikerraadio" heategevuskontsert. Artur Kapi ühingu esimees on Andres Uibo / Vello Mäeots

    Index Scriptorium Estoniae

    Mäeots, Vello, 1940-2015

    2001-01-01

    20. XI esines Hortus Musicus Moskvas Eesti saatkonnas. Eesti Rahvusmeeskoor kandis 15.XI Toulouse'is koos Toulouse'i Rahvusliku Linnaorkestriga ette Jean Sibeliuse "Kullervo". 22.XI tähistatakse hispaania helilooja Joaquín Rodrigo 100. sünniaastapäeva. Estonia teatri Valges saalis esitleti kogumik-CD-d "Georg Ots ئ Anthology". "Kiriku laulu- ja palveraamat" sai 30.XI 10. aastaseks. 3.XII toimub Tallinnas Kaarli kirikus "Vikerraadio" heategevuskontsert "Aita alustada elu". 26.X asutati Suure-Jaanis Rahvusvaheline Artur Kapi Ühing, mille esimeheks valiti organist Andres Uibo

  3. [Artur Wołyński--A forgotten Polish historian in Italy in the second half of the 19th century].

    Science.gov (United States)

    Piskurewicz, Jan

    2011-01-01

    Artur Wołyński (1844-1893) was, undoubtedly, one of the most interesting personages of Polish émigrés after January Uprising. He belonged to these circles of Polish émigrés, who were able to reconcile their patriotic aspirations with realities and interest of the countries that entertained them. As far as Wołyński is concerned, it found its expression in the efforts that were made in order to assimilate two nations--Polish and Italian people--appealing to the common history and familiar cultural traditions. An important element of integrating all the above-discussed actions was his scientific activity. The mentioned activity included, first of all, his studies on Nicolaus Copernicus and Galileo Galilei. In the article were analyzed more comprehensive scientific descriptions dedicated to Copernicus and Galileo prepared by Wołyński, and their significance and opinions on them of the learned, whose works treated on Copernicus and Galileo as well. Secondly, in the field of scientific activity of Wołyńiski, one can also observe his researches and the process of elaborating sources for Polish and Italian his tory, particularly concerning the 17th century. However, most of his attention Wołyński paid to collecting and working out the materials concerning January Uprising. Speaking a modern language, one can say that Wołyński in a way polled the insurgents of January Uprising sending to them an appropriate list of questions, additionally allowing for their biographies. In the paper was also included a detailed description of this broad initiative together with its results. Up till now, not much attention has been paid to this significant scientific activity and its contexts. So, the present article is to remind of meritorious personage of Wołyński, and particularly of his output within the realm of history of science, history of Polish and Italian relationships, and of the role he played in bequeathing memory of January Uprising.

  4. Mine p****e, Artur Talvik! / Artur Talvik

    Index Scriptorium Estoniae

    Talvik, Artur, 1964-

    2010-01-01

    Ühtse Eesti suurkogu ei mõjuta midagi ja jääbki vaid teatriks, kui me ise ei hakka ümbritsevat muutma. Autor avaldab imestust, miks Eestis välistatakse demokraatia olulised väljendusvormid - streigid ja meeleavaldused - ning kutsub õpetajaid enda eest seisma

  5. Estonija sdajot pozitsii / Artur Kurvits

    Index Scriptorium Estoniae

    Kurvits, Artur

    2006-01-01

    Rahvusvahelise kinnisvaraagentuuri Knight Frank ülemaailmse kinnisvara hindade reitingu Global House Price Index tulemustest. Eestis on kinnisvara hinnad viimase aasta jooksul tõusnud 10,5 protsenti. Lisa: Global House Price Index

  6. Biogaz raspolzajetsja po stranje / Artur Tooman

    Index Scriptorium Estoniae

    Tooman, Artur, 1971-

    2004-01-01

    Biogaasi tootmisest prügilates. Firma Terts AS-i projektist Pääsküla suletud prügilast tekkiva biogaasi kasutusele võtmiseks. Diagrammid: Tert AS majandusnäitajad; Elektri- ja soojusenergia müük

  7. "Iz holoda" s ljubovju / Artur Veeber

    Index Scriptorium Estoniae

    Veeber, Artur

    1999-01-01

    Osaliselt Eestis filmitud mängufilm "Virtuoos" ("Out of the Cold") : režissöör Sasha Buravsky : Ameerika Ühendriigid - Venemaa - Eesti 1999. Lähemalt peaosalistest : Keith Carradine ja Mia Kirshner

  8. Nash buksirovshtshik stanet krupneishim / Artur Tooman

    Index Scriptorium Estoniae

    Tooman, Artur, 1971-

    2008-01-01

    Puksiirettevõtete SIA PKL ja SIA Ostas Flote ühinemisel tekib Läänemere põhjaosa suurim kompanii, millest pool kuulub Eesti firmale PKL Holding AS ja teine pool tuntud Läti ärimehele Oleg Stepanovile

  9. Za rubezhom nashi bezrabotnõje - k mestu / Artur Tooman

    Index Scriptorium Estoniae

    Tooman, Artur, 1971-

    2003-01-01

    Tööpuudust aitaks osaliselt leevendada töötamine välisriikides. Sotsiaalministeeriumis valmistatakse ette spetsialiste, kes hakkavad edastama infot ja vajadusel vormistama dokumente Euroopa Liidu riikidesse tööleminejatele

  10. Estonian-bound Russian timber detours through Latvia / Artur Tooman

    Index Scriptorium Estoniae

    Tooman, Artur, 1971-

    2002-01-01

    Ilmunud ka: Baltiiskii Kurss 2002/Zima/Vesna nr. 20 lk. 29. Venemaa tollikomitee otsus, mis ei lubanud ühegi Eesti piiripunkti kaudu Vene metsa Eestisse eksportida, seab paljud metsaga kaubitsejad ning metsatöötlejad keerulisse olukorda. Diagramm

  11. Svoboda bez granits. I bez otvetstvennosti? / Artur Kurvits

    Index Scriptorium Estoniae

    Kurvits, Artur

    2006-01-01

    Rahvusvaheline organisatsioon Piirideta Reporterid avaldas iga-aastase aruande ajakirjandusvabaduse tasemest maailmas, kus Eesti asub sel aastal kuuendal kohal. Hinnangud tegelikule olukorrale viimastele presidendivalimistele tagasi vaadates

  12. Festival : "Tjomnõje notshi" Tallinna / Artur Veeber

    Index Scriptorium Estoniae

    Veeber, Artur

    1998-01-01

    II Pimedate Ööde Filmifestival 2.-6.dets. : Ülevaade festivalil toimunust ning lühiintervjuud festivalil osalenud režissööride Vadim Abdrašitovi, Zaza Urušadze ja stsenaristi Amiran Tshitshinadzega

  13. Polumilliardnõi spor budut reshat v Londone / Artur Tooman

    Index Scriptorium Estoniae

    Tooman, Artur, 1971-

    2006-01-01

    Soome peatöövõtja Foster Wheeler Energia OY nõuab rahvusvahelise arbitraazhi kaudu Eesti Energialt 38 miljonit eurot, tegemist on Narva Elektrijaamade energiablokkide renoveerimise lepingu ja selle täitmisel tekkinud vaidlusega

  14. Autoportree : [luuletused] / Artur Alliksaar ; [Impressioonid] : Viiu Härm

    Index Scriptorium Estoniae

    Alliksaar, Artur, 1923-1966

    2004-01-01

    Sisu: Autoportree ; Antidolorosum ; Asüül ; Sententse kahesusest (Nefas) ; Üksinduse randadel ; Ootus ; Uskumus ; Pilgud punuvad püüniseid ; Selgimus ; Talveidüll ; Tantsijad ; Sõnade sügis ; Optimistlik eleegia ; Jällenägemine (Quasi una fantasia) ; Kolm unesoolot kuuldamatu kooriga ; Padrikus ; Tundmatu eel ; Õnnelähistel ; Nauding ; Hilissuve päev ; Neis mälestustes pole kahetsust ; Mu hinges mälestused on tõusnud troonile ; Laskumine ; Ahtumine ; Üks sügishommik on äkki vilu... ; Hea oleks teada... ; Salapärane rongkäik ; Janud ; Seitse etüüdi ; Nõiaringis ; Kahe ääretuse vahel...; Õhtu rannas ; Keegi ei tea... (Primitiive) ; Eelärkamine ; Kirjaneitsi mälestuseks ; Friedebert Tuglasele ; Rein Sepale ; Mõttejoomar ; Kolm kunstnikku: Altamira Nimetu ; Vabadus ; Navigaatorid ; Ei hävi mõte, varjav elu seemneid ; Olematus võiks ju ka olemata olla ; Alternatiive ; Ärev on ärkamine äikesesse ; Nokturn, veidi ärev ja veidi kurb ; Ootesaalis ; Päikestepillajad ; Eleegiline ditüramb dialektilise analüüsi elementidega ; Sain siledaks vileda vile, mille kõikainsa aine ja helilained pühendan Ain Kaalepile ; "Santa Maria" ; Ulmfantaasiaid ; Tule, kuula, kuidas kumisevad uned ; Kamalutäis kaaluvihte ; On see õitsvate kaktuste sosin? (Picasso - Magnelli - Mir̤) ; Mis kuulub kõigile, ei kuulu kellelegi ; Tuulefuuga tumma suuga mõtisklusse vajund puuga... ; Välkvisioon ; Kohtumisi ; Lahkühtimine ; Avastusretk ; Lootust peab pälvima ; Kahekesi ; Liturgiline litsents ; Käidi ja külvati varjude seemneid, sest valgus hakkas võrsuma ; Tule, tule tulega! ; Kuigi on nii palju lilli... ; Pöördehetk ; Küsin sinult... ; Armastuse teed on voolavad kui veed ; Sidruniballaad ; Katkeid ; On asju, milles eksida ei saa ; Diletandi mõtteid vabavärsist ; Teeme hüppe laanerüppe kevadmaikudes, iga viga, haigus vaibub vaiguvaikuses (valimik mikrovalme) ; Lüüriline intermetso ; Jagamatu on jagatud ; Välgud peeglis ; Nostalgia ; Tikutõmbeid kottpimedas galeriis ; Ärklituba ; Hommik ei oota õhtut ; Improvisatsioone harfil ; Morbiidseid maastikke ; Sõnad sinule, surm, suurele vaikusele ja iseendale ; Õhtute kollane tolm ; Kõik on kõige peegeldus ; Kas süvenev sügis viib sinugi ?... ; Kolm kosmogoonilist etüüdi ; Interregnum ; Neli etüüdi ; Üks vari laulis apelsinisalus. Ta vaevalt lõpetas, kui unus, kes ja kus ; Ürgmetsas ; Tuleb ingel ja puudutab vett ; Lahkusid, kui loojus kuu ; Rändur on teel... ; Mis saab sellest loomusevalust? ; Läbi selle metsa olen näinud ; Kuskil ajajõe taga ; Aeg

  15. Dano tseu speshno sozdat TsU / Artur Tooman

    Index Scriptorium Estoniae

    Tooman, Artur, 1971-

    2007-01-01

    Narvas luuakse veel üks tööstuspark - Narva Tööstusala Arendus SA, mida finantseeritakse linna eelarvest ja Euroopa fondidest. Sihtasutus hakkab 100protsendiliselt kuuluma linnale. Vt. samas: Ida-Virumaa tööstuspargid investeerivad kümneid miljoneid

  16. Zivilrechtliche Durchsetzung der Fluggastrechte – eine Belastung für Fluggesellschaften und Verbraucher / Artur Geier

    Index Scriptorium Estoniae

    Geier, Artur

    2016-01-01

    Reisijatele lennureisist mahajätmise korral ning lendude tühistamise või pikaajalise hilinemise eest antava hüvitise ja abi kohta käiva direktiivi rakendamise probleemidest, eriti õigusest hüvitisele, õigusest tagasimaksmisele või teekonna muutmisele ja õigusest hoolitsusele (art. 7, 8, 9)

  17. "Dostali!" - s segodnjashnego dnja / Peeter Simm, Artur Talvik ; interv. Boris Tuch

    Index Scriptorium Estoniae

    Simm, Peeter, 1953-

    2006-01-01

    Tallinnas ning Tartu ja Pärnu kinodes esilinastub Eesti-Saksa koostööfilm "Kõrini" : režissöör Peeter Simm : osades Maarja Jakobson, Rasmus Kaljujärv, Heio von Stetten, Thomas Schmauser : Ruut Pictures (Eesti) - Saxonia Film (Saksa) 2005

  18. Karastusjoogihiid võib Eestile selja pöörata / Virge Lahe, Artur Tooman

    Index Scriptorium Estoniae

    Lahe, Virge

    2008-01-01

    Coca-Cola kolib kulude optimeerimiseks oma tootmise Tallinnast Lätti. Vt. samas: Õlletehas jätkab Sakus; Farmaatsiatehas võib kolida Riiga; Coca-Cola Hellenic. Diagramm: Coca-Cola majandusnäitajad

  19. Artur Rinne, härra Punttila ja Charley tädi Gert Kiiler

    Index Scriptorium Estoniae

    Kiiler, Gert, 1974-

    2009-01-01

    Ugala teatri hooaja tulevasi etendusi tutvustavad nende lavastajad: Andrus Kivirähk "Vanamehed seitsmendalt" - lavastaja Peeter Tammearu. Mati Põldre, Margus Vaher "Arturi laulud ja aastad" - lavastaja Margus Vaher. Sandor Marai "Küünlad põlevad lõpuni..."- lavastaja Indrek Sammul. Berthold Brecht "Härra Punttila ja tema sulane Matti" - lavastaja Kalju Komissarov. Brandon Thomas "Charley tädi" - lavastaja Taago Tubin

  20. Neudatshnõi opõt - poleznõi opõt / Artur Tooman

    Index Scriptorium Estoniae

    Tooman, Artur, 1971-

    2007-01-01

    OÜ Eesti Tubakas investeeris OÜ Innovative Pack Systeme abil 3 miljonit dollarit sigaretitehase seadmetesse, et suurendada tootmist, kuid turunduspartner Greenfield Tobacco loobus täitmast oma kohustusi ja taganes oma lubadustest realiseerida toodang Aafrika turul. Diagramm: Innovative Pack Systeme OÜ majandusnäitajad

  1. Punk film kodanikuühiskonnast / Artur Talvik, Peeter Vihma, Jaan Tootsen ; intervjueerinud Andrei Liimets

    Index Scriptorium Estoniae

    Talvik, Artur, 1964-

    2013-01-01

    Tallinna Uue Maailma kogukonnast rääkivast režissöör Jaan Tootseni ja produtsent Jaak Kilmi dokumentaalfilmist "Uus Maailm". Arutlus teemal, milline on kohaliku kogukonna ja milline riiklike ning kohalike institutsioonide roll paikkonna elu suunamisel ja koordineerimisel, nende omavaheline mõju

  2. Sulandumine: brändimaastik = Blending in: brandscape / Artur Staškevitš

    Index Scriptorium Estoniae

    Staškevitš, Artur

    2013-01-01

    EKA arhitektuuri ja linnaplaneerimise osakonna III kursuse 2009-2012 aastail erialase projekteerimise raames loodud lahendus koosneb kolmest selgest arhitektuursest ja ehituslikust mahust, mis sujuvalt linnakeskkonda sulanduvad

  3. Tikutõmbeid kottpimedas galeriis = Striking matches in a pitch-dark gallery : [luuletused] / Artur Alliksaar

    Index Scriptorium Estoniae

    Alliksaar, Artur, 1923-1966

    2001-01-01

    Tekst eesti ja inglise k. A. Alliksaare lühibiograafia eesti ja inglise k. lk. 55. Sisu: Tikutõmbeid kottpimedas galeriis = Striking matches in a pitch-dark gallery ; "Olen määratusuur mets..." = "I am infinitely vast forest..." ; "Olen koredate külgedega kalju..." = "I am rough-sided cliff..." ; "Olen meri, millel puudub äär..." = "I am sea that knows no bounds..." ; "Liikumine on niivõrd liitunud mu loomusega..." = "Movement is so much part of me..." ; "Ma ei söandaks öelda, et olen rikas..." = "I would not claim that I am rich..." ; Pöördehetk = Turning point ; Kuigi on nii palju lilli... = Though there are so many flowers ; Antidolorosum

  4. Eesti ajaloolaste ülemaailmne auhind : dr. Artur Puksovi auhind 2003 / Helmut Piirimäe

    Index Scriptorium Estoniae

    Piirimäe, Helmut, 1930-

    2003-01-01

    Laureaadid: Enn Küng (monograafia "Rootsi majanduspoliitika Narva kaubanduse küsimuses 17. sajandi teisel poolel"); Anti Selart (monograafia "Liivimaa ja Vene 13. sajandil. Uurimus poliitilisest ajaloost"); Tiina Kala (raamat "Euroopa kirjakultuur hiliskeskaegsetes õppetekstides. Tallinna dominiiklase David Sliperi taskuraamat"); Juhan Kreem (monograafia "The Town and Its Lord: Reval and the Teutonic Order"); Andres Tvauri (monograafia "Muinas- Tartu Uurimus Tartu muinaslinnuse ja asula asustusajaloost")

  5. Rõbolovõ hotjat zanimatsja proizvodstvom file i konservov / Artur Tooman

    Index Scriptorium Estoniae

    Tooman, Artur, 1971-

    2003-01-01

    Kohalikel kaluritel ei ole majanduslikult tulus kala püüda, seetõttu plaanivad paljud ise ka kalatöötlemisega tegeleda. Tabel: Kala ümbertöötlevate ettevõtete arv, kala eksport/import, kalapüügi maht. Statistika

  6. Artista - corpo - cidade - política - arte: relatos sobre Artur Barrio e sua obra

    OpenAIRE

    Julia Maia Reboucas

    2011-01-01

    Durante as décadas de 1960 e 1970, momento em que diversos países latino-americanos viviam sob regimes ditatoriais, importantes e contundentes manifestações artísticas se desenvolveram. Diferenciando-se da produção em curso na América do Norte e na Europa, os artistas que atuavam no Brasil e na América Latina reagiam a um panorama de coerções, perseguições ideológicas e humilhações. A atuação como artista neste contexto acabou por configurar um novo jeito de se relacionar com a arte, com o ou...

  7. Biznes i obshtshestvo : Sillamäe võhodit iz desjatiletnei spjatshki / Artur Tooman

    Index Scriptorium Estoniae

    Tooman, Artur, 1971-

    2006-01-01

    Sillamäe linna eluolu, sadama mõju linna arengule. Arvamust avaldavad linnavolikogu liige Sergei Rjabkov, linnapea Ain Kiviorg ja kohalikud ettevõtjad. Lisa: diagrammid linna eelarve ja ettevõtluse kasvu kohta

  8. Me ei kerja - me töötame! / Artur Taevere

    Index Scriptorium Estoniae

    Taevere, Artur

    2005-01-01

    Heateo Sihtasutus korraldab konkursi tunnustamaks sotsiaalseid ettevõtjaid - ettevõtjaid, kes aitavad lahendada puuduses kannatavate inimeste probleeme. Näitena toodud Shotimaal käivitatud ajakirja Big Issue müük, millega tegelevad vaid kodutud

  9. Ruumieksperiment nimega Arhitektuurikatel = A spatial experiment called Arhitektuurikatel (Architecture Hub) / Artur Ümar, Tõnu Laigu

    Index Scriptorium Estoniae

    Ümar, Artur

    2014-01-01

    Arhitektuurikatel Tallinnas Põhja puiesteel. Arhitektuur: Tõnu Laigu, Koit Ojaliiv (QP Arhitektid), võistlusel osalesid ka Helen Rebane ja Triinu Silla. Sisearhitektuur: Andres Labi, Janno Roos (Ruumilabor). Valmimisaasta: 2013

  10. Kunstiakadeemia arhitektuuritudengid Pariisis / Artur Staškevitš, Laura Linsi, Roland Reemaa ... [jt.] ; üles kirjutanud Margit Mutso

    Index Scriptorium Estoniae

    2011-01-01

    Eesti Kunstialadeemia arhitektuuri eriala tudengite muljeid Pariisist ja osalemisest Pariisi Belleville'i arhitektuurikõrgkoolis (Ecole Nationale Supérieure d'Architecture Paris-Belleville) toimunud töötoas. Tuli kavandada üliõpilaselamu elitaarsesse Marais' piirkonda, leida üliõpilaselamise mudel

  11. Corpus Juris ja Eesti : [bakalaureusetöö] / Artur Kink ; Tartu Ülikool, õigusteaduskond ; juhendaja: Eerik Kergandberg

    Index Scriptorium Estoniae

    Kink, Artur

    1999-01-01

    Corpus Jurise taust ja areng - finantshuvide kaitse areng, Corpus Jurise ajalugu; Corpus Jurise õiguslik baas (Amsterdami leping), ülesehitus ja struktuur (üleeuroopalise territoriaalsuse printsiip, kohtuliku kontrolli printsiip, "vastuväitelise" protsessi printsiip, kohaliku õiguse subsidiaarsuse printsiip)

  12. Port Artur 3 arhitektuurikonkursi võidutöö sündis Itaalias / Eno-Gerrit Link

    Index Scriptorium Estoniae

    Link, Eno-Gerrit

    2006-01-01

    Pärnu kesklinna jõeäärse ala rahvusvahelise arhitektuurikonkursi tulemustest. Võitis itaalia arhitektide projekt "Flood". Teise koha võitis projekt "Istu ja vaata" (Jan Skolimovski ja Peeter Loo), kolmanda koha "Nicesaar" (Ott Kadarik, Villem Tomiste, Mihkel Tüür)

  13. Keskerakond võitles töörahva õiguste eest kella kaheni öösel / Andrus Karnau, Artur Sadovski

    Index Scriptorium Estoniae

    Karnau, Andrus

    2008-01-01

    Töölepinguseaduse eelnõu teisest lugemisest riigikogus. Lisatud: töölepinguseaduse uuendused ; Kaire Uuseni intervjuu Kalev Chocolate Factory personalijuhi Kärt Kirsoga: Ettevõtjad aimavad töövaidluste arvu kasvu

  14. Alliksaar: rohkem kui legend / Paul-Eerik Rummo

    Index Scriptorium Estoniae

    Rummo, Paul-Eerik, 1942-

    2010-01-01

    Artur Alliksaare avaldusest, mis pärineb tema toimikust (NSVL Justiitsministeeriumi parandusliku töö laagrite režiimi- ja operatiivosakonna toimik nr. 5348). Avalduses annab Artur Alliksaar end üles kui Saksa sõjaväe vabatahtliku. Vt ka Paul-Eerik Rummo artiklit "Artur Alliksaare dokumenteeritud legend" ajakirjas Keel ja Kirjandus, 2003, nr. 4.

  15. Biodiversity Monitoring Using NGS Approaches on Unusual Substrates (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    Energy Technology Data Exchange (ETDEWEB)

    Gilbert, Tom

    2013-03-01

    Tom Gilbert of the Natural History Museum of Denmark on "Biodiversity monitoring using NGS approaches on unusual substrates" at the 8th Annual Genomics of Energy & Environment Meeting in Walnut Creek, Calif.

  16. New Approaches and Technologies to Sequence de novo Plant reference Genomes (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    Energy Technology Data Exchange (ETDEWEB)

    Schmutz, Jeremy

    2013-03-01

    Jeremy Schmutz of the HudsonAlpha Institute for Biotechnology on New approaches and technologies to sequence de novo plant reference genomes at the 8th Annual Genomics of Energy Environment Meeting on March 27, 2013 in Walnut Creek, CA.

  17. Scalability of Comparative Analysis, Novel Algorithms and Tools (MICW - Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)

    Energy Technology Data Exchange (ETDEWEB)

    Mavrommatis, Kostas

    2011-10-12

    DOE JGI's Kostas Mavrommatis, chair of the Scalability of Comparative Analysis, Novel Algorithms and Tools panel, at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

  18. Poolakad näitavad etlemiskunsti / Gert Hatsukov ; interv. Johannes Saar

    Index Scriptorium Estoniae

    Hatsukov, Gert

    2004-01-01

    Ürituse korraldaja Gert Hatsukoviga poola etlemiskunstnikest Pawel Kwasniewskist, Wladislav Kazmierczakist, Ewa Rybskast, Artur Grabowskist ja Dariusz Fodczukist. Poola etlemiskunsti õhtupoolik "Transmission" toimub Vaal-galeriis

  19. "Juba õhtu on käes..." : [luuletused] / Sergei Jessenin ; tlk. Helvi Jürisson, Artur Alliksaar, Muia Veetamm, Linda Ruud, Jaan Kross, Ellen Niit, Debora Vaarandi, Venda Sõelsepp

    Index Scriptorium Estoniae

    Jessenin, Sergei, 1895-1925

    2006-01-01

    Sisu: "Juba õhtu on käes..." ; "Seal, kus koit valab kapsaste vahel..." ; "Tulvavesi suitsev..." ; "Tegin oja kaldal vene..." ; "Laia taevaliua sinal..." ; "Kallis kodu! Näen kui unes..." ; "Olen karjus; minu valdus..." ; Venemaa ; Joobumus ; Hobused ; Laul koerast ; "Milleks punakuldseis põõsais nuuksed..." ; "Teispool jõge lõkkeread..." ; "Mind väsitand on kodunurk..." ; "See on mu kodu, mõtlik-hell..." ; Sinendus ; "Õhtul, kui kõik jooned nõrgemad..." ; "Homme varakult üles mind aja..." ; "Isamaja, kuhu jäid..." ; "Paljad põllud, metsaveered..." ; "Su juus on roheline..." ; "Laulud, laulud, kuhu te viite..." ; "Õnn, sina rumal! Mu aknad..." ; "Valged teed kinni tuiskab..." ; "Taas kiindumust ma vajan uut..." ; "Tiigipinnale kuldlehti liibub..." ; "Tuuled, tuuled, oo lund tooge, tuuled..." ; "Olen viimane külapoeet ma..." ; "Pole tarvis palvet, kurtmist, nuttu..." ; "Jah! Nüüd kindel on küll, et ei iial..." ; "Samasugune lihtne kui muud..." ; "Mingi troika on värava taga..." ; Kiri emale ; "Kõik me vähehaaval kaome sinna..." ; "Shagane, minu hea Shagane..." ; "Elurõõmus maailm, sinine ja lai..." ; "Koju ma ei leia teed..." ; "Sinav mai. Eha punerdav joom..." ; "Magab stepp. Koirohu tinast värskust..." ; "Meretäis sädinat õues..." ; "Elu pettus on, mis kestab päevast päeva..." ; "Mängi, lõõtspill, julgelt, mängi, lõõtspill, valju..." ; "Pole näinud ma kaunimat sinust..." ; "Laula nüüd mõnda laulukest, mida..." ; "Selle maailma kiiresti läbin..." ; "Sinistkirja pluus ja sinisilmadki..." ; "Tukub heledas kuuvalges..." ; "Küll on tuisk, tont võtaks, taevas ära kaob..." ; "Kes ma olen? Ainult unistaja..." ; "Sõber, hüvasti, mul ees on minek...". Eluloolisi andmeid autori kohta lk. 821

  20. The genome portal of the Department of Energy Joint Genome Institute: 2014 updates

    Energy Technology Data Exchange (ETDEWEB)

    Nordberg, Henrik [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Cantor, Michael [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Dusheyko, Serge [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Hua, Susan [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Poliakov, Alexander [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Shabalov, Igor [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Smirnova, Tatyana [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Grigoriev, Igor V. [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Dubchak, Inna [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)

    2013-11-12

    The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a national user facility, serves the diverse scientific community by providing integrated high-throughput sequencing and computational analysis to enable system-based scientific approaches in support of DOE missions related to clean energy generation and environmental characterization. The JGI Genome Portal (http://genome.jgi.doe.gov) provides unified access to all JGI genomic databases and analytical tools. The JGI maintains extensive data management systems and specialized analytical capabilities to manage and interpret complex genomic data. A user can search, download and explore multiple data sets available for all DOE JGI sequencing projects including their status, assemblies and annotations of sequenced genomes. In this paper, we describe major updates of the Genome Portal in the past 2 years with a specific emphasis on efficient handling of the rapidly growing amount of diverse genomic data accumulated in JGI.

  1. Jüri 22 ärihoone-elamu - Võru esimene pilvelõhkuja / Ivi Laatsit

    Index Scriptorium Estoniae

    Laatsit, Ivi

    2004-01-01

    1923. a. arhitekt Artur Perna (1881-1940) projekti järgi valminud Tarvitajate Ühisuse Põllumees uuest hoonest ja selle ajaloost. Lühidalt 2001. a. Ilmar Jalase projekteeritud Wõro Kommertsi ärihoonest ja Artur Perna biograafilised andmed

  2. Jejunogastric intussusception presented with hematemesis: a case presentation and review of the literature

    Directory of Open Access Journals (Sweden)

    Papastratis George

    2001-01-01

    Full Text Available Abstract Background Jejunogastric intussusception (JGI is a rare but potentially very serious complication of gastrectomy or gastrojejunostomy. To avoid mortality early diagnosis and prompt surgical intervention is mandatory. Case presentation A young man presented with epigastric pain and bilous vomiting followed by hematemesis,10 years after vagotomy and gastrojejunostomy for a bleeding duodenal ulcer. Emergency endoscopy showed JGI and the CT scan of the abdomen was compatible with this diagnosis. At laparotomy a retrograde type II, JGI was confirmed and managed by reduction of JGI without intestinal resection. Postoperative recovery was uneventful. Conclusions JGI is a rare condition and less than 200 cases have been published since its first description in 1914. The clinical picture is almost diagnostic. Endoscopy performed by someone familiar with this rare entity is certainly diagnostic and CT-Scan of the abdomen could also help. There is no medical treatment for acute JGI and the correct treatment is surgical intervention as soon as possible.

  3. A knowledge federation architecture for rare disease patient registries and biobanks - See more at: http://www.lectitopublishing.nl/Article/Detail/9P2U85EL#sthash.YeeJGY0t.dpuf

    Directory of Open Access Journals (Sweden)

    Pedro Sernadela

    2016-03-01

    Full Text Available Patient registries are a source of standardized electronic patient information. These records are vital to identify and coordinate a proper cohort, especially for the rare disease domain. Likeness, biobanks are currently an essential instrument for biomedical research, since they provide the very first piece of the biomedical research cycle, i.e. the biological samples. However, connection between rare diseases, patient registries and biobanks has been very limited, due to the lack of common data models and procedures. As they were built with security and privacy in mind, available tools lack comprehensive data access mechanisms, thus making data sharing a complex process. To tackle these challenges, we introduce a semantic web-based architecture to connect distributed and heterogeneous registries and samples. The outcome is a unique knowledge layer, connecting miscellaneous datasets and enabling state-of-the-art semantic data sharing mechanisms.

  4. Genomics Encyclopedia of Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB): a resource for microsymbiont genomes (2013 DOE JGI Genomics of Energy and Environment 8th Annual User Meeting)

    Energy Technology Data Exchange (ETDEWEB)

    Reeve, Wayne [Murdoch University

    2013-03-01

    Wayne Reeve of Murdoch University on "Genomics Encyclopedia of Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB): a resource for microsymbiont genomes" at the 8th Annual Genomics of Energy & Environment Meeting on March 27, 2013 in Walnut Creek, Calif.

  5. Eesti juurtega ameeriklane teeb filmi laulvast revolutsioonist / Sigrid Laev

    Index Scriptorium Estoniae

    Laev, Sigrid

    2005-01-01

    James Tusty ja tema abikaasa Maureen Castle teevad oma firmaga Mountain View Productions dokumentaalfilmi Eesti taasiseseisvumisest. Ameeriklaste kõrval on Eestist kaasprodutsendiks Artur Talvik. Filmi eelarve on üle 4 miljoni krooni

  6. Raamatud / Juhan Habicht

    Index Scriptorium Estoniae

    Habicht, Juhan, 1954-

    1991-01-01

    Raamatutvustused: Beier, Priidu. Mustil päevil. Tallinn : Eesti Raamat, [1991]. Ristikivi, Karl. Inimese teekond : luuletusi. Tallinn : Eesti Raamat, 1991. Erich, Artur. Äike. Tallinn : Eesti Raamat, [1991

  7. Resignatsioonis ja lootuses / Paul-Eerik Rummo

    Index Scriptorium Estoniae

    Rummo, Paul-Eerik, 1942-

    2010-01-01

    Ettekanne kodu- ja väliseesti kirjanike kohtumisel Helsingi Ülikoolis 15.-16. mail 1989. Poliitikast ja kirjandusest, Nõukogude Eesti kirjandusest. Artur Alliksaare, Uku Masingu ja Kersi Merilaasi loomingust

  8. Romantitsheskaja utopia, ili Progulka s fotokameroi / Galina Balashova

    Index Scriptorium Estoniae

    Balashova, Galina

    2007-01-01

    Fotonäitus "The Belarusian Identity cArt" Tallinna Kunstihoone galeriis. Eksponeeritud on Artur Klinovi (Klinau) fotoseeria "Minsk - unenägude päikeselinn", Igor Savtshenko fotoseeria "Kommenteeritav maastik" ja Andrei Liankevitshi fotod

  9. Kaks turgi eepost eesti keeles / Ott Kurs

    Index Scriptorium Estoniae

    Kurs, Ott, 1939-

    2013-01-01

    Arvustus: Manas : pärimus kangelasest : kirgiisi rahva eepos / [ümberjutustus ja runod: Peeter Ilus ; toimetaja ja järelsõna: Artur Laast ; illustraator Kristina Viin ; kujundaja Mart Anderson]. Ikla : Penikoorem, 2012

  10. ABC Kinga kauplused = ABC King shoe stores

    Index Scriptorium Estoniae

    2011-01-01

    Tallinnas Kristiine keskuses, Tartu Kaubamajas ja Pärnus Port Artur 2 asuvate ABC Kinga kaupluste sisekujundusest. Sisearhitekid Andres Labi ja Janno Roos (Ruumilabor OÜ), loetletud nende ühiselt tehtud töid

  11. Groups – Additive Notation

    Directory of Open Access Journals (Sweden)

    Coghetto Roland

    2015-06-01

    Full Text Available We translate the articles covering group theory already available in the Mizar Mathematical Library from multiplicative into additive notation. We adapt the works of Wojciech A. Trybulec [41, 42, 43] and Artur Korniłowicz [25].

  12. Groups – Additive Notation

    OpenAIRE

    Coghetto Roland

    2015-01-01

    We translate the articles covering group theory already available in the Mizar Mathematical Library from multiplicative into additive notation. We adapt the works of Wojciech A. Trybulec [41, 42, 43] and Artur Korniłowicz [25].

  13. Homme kell 14 algab Vaala galeriis järjekordse "INPORTi" raames...

    Index Scriptorium Estoniae

    2004-01-01

    Poola kunstnike Dariusz Fodczuki (sünd. 1966), Wladislaw Kazmierczaki (sünd. 1951), Ewa Rybska (sünd. 1958), Artur Grabowski ja Pawel Kwasniewski (sünd. 1963) performance'ite esitlus. Korraldaja Gert Hatsukov

  14. Halb raamat ja veel parem raamat / Veiko Märka

    Index Scriptorium Estoniae

    Märka, Veiko, 1964-

    1998-01-01

    Arvustus: Remsu, Olev. Tšingis-khaan on Ungern-Sternberg : näidend. Tallinn : Perioodika, 1997. (Loomingu Raamatukogu; 1997, 35); Remsu, Olev. Artur Magnussoni suur sõjasuvi : lühiromaan. Tallinn : Eesti Raamat, 1997

  15. Vastse juubilari ajalood / Peeter Künstler

    Index Scriptorium Estoniae

    Künstler, Peeter, 1958-2009

    1997-01-01

    Arvustus: Remsu, Olev. Artur Magnussoni suur sõjasuvi : [lühiromaan]. Tallinn : Eesti Raamat, 1997; Remsu, Olev. Tšingis-khaan on Ungern-Sternberg : [näidend]. Tallinn : Perioodika, 1997. (Loomingu rmtk.; 35)

  16. Action-film jutustab Eesti ajaloost / Silja Joon

    Index Scriptorium Estoniae

    Joon, Silja, 1966-

    2008-01-01

    Töös olevast 1924. aasta 1. detsembri kommunistlikust riigipöördekatsest jutustavast mängufilmist "Detsembrikuumus" : režissöör Asko Kase : produtsent Artur Talvik : osades Liisi Koikson, Sergo Vares jt

  17. Kriitilisi märkmeid 1931. aasta luule puhul / Ants Oras

    Index Scriptorium Estoniae

    Oras, Ants, 1900-1982

    2009-01-01

    Pikemalt käsitletakse järgnevaid autoreid ja nende teoseid: Erni Hiir "Kodutee", Henrik Visnapuu "Tuulesõel", Artur Adson "Pärlijõgi", Hendrik Adamson "Tõus ja mõõn", Betti Alver "Lugu valgest varesest"

  18. Filmi- ja videofestival kolis Port Arturisse / Silja Joon

    Index Scriptorium Estoniae

    Joon, Silja, 1966-

    2009-01-01

    Pärnu filmi- ja videofestival 2009 Port Artur 2 kaubanduskeskuses. Näeb videoinstallatsioonide kava ja noorteprogrammi. Korraldab Non Grata. Videoprogrammi koostab Al Paldrok, virtuaalmeedia osa Raivo Kelomees, filmiprogrammi Andres Maimik ja installatsioonide erikava Taje Tross. Festivali kava

  19. Pärnu fideofest kui maailma köök / Marian Kivila

    Index Scriptorium Estoniae

    Kivila, Marian, 1985-

    2011-01-01

    9.-13. augustini toimunud Pärnu filmi- ja videofestivalist Pärnu Kunstnike Majas, kaubanduskeskuses Port Artur 2 ja "Like-Kuldrula" rulafestivalil. Rahvusvahelise video- ja filmiprogrammi pani kokku Ville-Karel Viirelaid

  20. Printsess leiab paazhi / Oskar Kruus

    Index Scriptorium Estoniae

    Kruus, Oskar, 1929-2007

    2003-01-01

    Marie Underi ja Artur Adsoni abielust, ka Carl Hackerist. Ilmunud ka kogumikus: Kruus, Oskar. Kakskümmend üks pulma ja üksteist surma : kirjanduslooliste vestete kogumik. Tallinn : Faatum, 2003, lk. 79-86

  1. Raamatututvustus / Oskar Tanner

    Index Scriptorium Estoniae

    Tanner, Oskar, pseud., 1939-

    1996-01-01

    Eliade, Mircea. Jaaniöö; Kippel, Enn. Kui Raudpea tuli; Beecher Stowe, Harriet. Onu Tomi onnike; Wallace, Edgar. Valge mask; Buchan, John. Kolm pantvangi; Rendell, Ruth. Hunditapp; Jurin, Artur. Näpsu

  2. Ülevaade akordionimängu ja -õpetuse arengust Eestis = The history of accordion performance and pedagogy in Estonia / Tiina Välja

    Index Scriptorium Estoniae

    Välja, Tiina, 1962-

    2014-01-01

    Lähemalt akordionistidest Robert Salong, Johann Lõhmus, Leopold Vigla, Artur Aola, Woldemar Koch, Vello Karu, Venda Tammann, Heinrich Annion. Ka akordionialase kõrghariduse omandamisest väljaspool Eestit

  3. Kes on tõusmas relvile? / Jürgen Rooste

    Index Scriptorium Estoniae

    Rooste, Jürgen, 1979-

    2004-01-01

    Arvustus: Oja, Martin., keelatud raamat : tekste 1996-2000. Tallinn : 9 Koma, 2003 ; Klaus, Eduard. Pommikutsikas. Tartu : Ilmamaa, 2003 ; Mölter, Artur. Leitud hing... ja purunenud süda. Põltsamaa : A. Mölter, 2003 ; Kera, Mihkel. Tähelepanekuid noorusaastatest. I. k. : Kirja Kerrallaan, 2003 ; Valme, Villem. Artur Tõhu unenägu. Tallinn : Paala Järv, 2003 ; Valdmann, Astrid, Kagovere, Ott. Haiged lapsed. Sutlema (Raplamaa) : A. Valdmann, 2004 ; Olematu, Olev. Ederlezi. [Tallinn] : Huma, 2003

  4. Single Cell and Metagenomic Assemblies: Biology Drives Technical Choices and Goals (Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)

    Energy Technology Data Exchange (ETDEWEB)

    Stepanauskas, Ramunas

    2011-10-13

    DOE JGI's Tanja Woyke, chair of the Single Cells and Metagenomes session, delivers an introduction, followed by Bigelow Laboratory's Ramunas Stepanauskas on "Single Cell and Metagenomic Assemblies: Biology Drives Technical Choices and Goals" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

  5. Evaluation of the Cow Rumen Metagenome: Assembly by Single Copy Gene Analysis and Single Cell Genome Assemblies (Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)

    Energy Technology Data Exchange (ETDEWEB)

    Sczyrba, Alex

    2011-10-13

    DOE JGI's Alex Sczyrba on "Evaluation of the Cow Rumen Metagenome" and "Assembly by Single Copy Gene Analysis and Single Cell Genome Assemblies" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

  6. Exploiting HPC Platforms for Metagenomics: Challenges and Opportunities (MICW - Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)

    Energy Technology Data Exchange (ETDEWEB)

    Canon, Shane

    2011-10-12

    DOE JGI's Zhong Wang, chair of the High-performance Computing session, gives a brief introduction before Berkeley Lab's Shane Canon talks about "Exploiting HPC Platforms for Metagenomics: Challenges and Opportunities" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

  7. Evolution of the defensin-like gene family in grass genomes

    Indian Academy of Sciences (India)

    that the DEFL gene family is subjected to purifying selection. However, sliding window analysis .... sorghum from DOE-JGI Community Sequencing Program ..... This work was supported by the National Key Technologies Re- search and ...

  8. Genome Assembly Forensics: Metrics for Assessing Assembly Correctness (Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)

    Energy Technology Data Exchange (ETDEWEB)

    Pop, Mihai

    2011-10-13

    University of Maryland's Mihai Pop on Genome Assembly Forensics: Metrics for Assessing Assembly Correctness at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

  9. Memory Efficient Sequence Analysis Using Compressed Data Structures (Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)

    Energy Technology Data Exchange (ETDEWEB)

    Simpson, Jared

    2011-10-13

    Wellcome Trust Sanger Institute's Jared Simpson on Memory efficient sequence analysis using compressed data structures at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

  10. Comparison of Normalized and Unnormalized Single Cell and Population Assemblies (MICW - Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)

    Energy Technology Data Exchange (ETDEWEB)

    Hugenholtz, Phil

    2011-10-12

    University of Queensland's Phil Hugenholtz on "Comparison of Normalized and Unnormalized Single Cell and Population Assemblies" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

  11. Effective Analysis of NGS Metagenomic Data with Ultra-Fast Clustering Algorithms (MICW - Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)

    Energy Technology Data Exchange (ETDEWEB)

    Li, Weizhong

    2011-10-12

    San Diego Supercomputer Center's Weizhong Li on "Effective Analysis of NGS Metagenomic Data with Ultra-fast Clustering Algorithms" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

  12. Sequencing Single Cell Microbial Genomes with Microfluidic Amplifications Tools (MICW - Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)

    Energy Technology Data Exchange (ETDEWEB)

    Quake, Steve

    2011-10-12

    Stanford University's Steve Quake on "Sequencing Single Cell Microbial Genomes with Microfluidic Amplification Tools" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

  13. Joint Genome Institute's Automation Approach and History

    Energy Technology Data Exchange (ETDEWEB)

    Roberts, Simon

    2006-07-05

    Department of Energy/Joint Genome Institute (DOE/JGI) collaborates with DOE national laboratories and community users, to advance genome science in support of the DOE missions of clean bio-energy, carbon cycling, and bioremediation.

  14. Talendid, kes tulid tagasi koju / Laura Mallene

    Index Scriptorium Estoniae

    Mallene, Laura

    2010-01-01

    IsePankuri asutajast Pärtel Tombergist, start-up firmaga Cutefund tegelevast Enn Metsarist, riigikantselei EL-i sekretariaadi konsultandist Katrin Juhandist, Küberkaitse Kompetentsikeskuse töötajast Anna-Maria Talihärmist, LHV Turunduse töötajast Ellen Murulast, Elioni finantsanalüütikust Artur Elmest

  15. Millise mängufilmi tellis Sõõrumaa Falcki peoks / Andris Feldmanis

    Index Scriptorium Estoniae

    Feldmanis, Andris, 1982-

    2006-01-01

    Mängufilm või pseudodokumentaalfilm "Hundi agoonia", mis valminud ärimees Urmas Sõõrumaa tellimustööna turvafirma Falck 15-ks sünnipäevaks : režissöör Asko Kase, produtsent Artur Talvik, stsenarist Peep Pedmanson : RUUT Pictures 2006

  16. Urmas Sõõrumaa rentis peoks terve linnahalli / Kirsti Vainküla

    Index Scriptorium Estoniae

    Vainküla, Kirsti, 1972-

    2006-01-01

    Peol esilinastub mängufilm "Hundi agoonia", mis valminud tellimustööna : režissöör Asko Kase, produtsent Artur Talvik, stsenarist Peep Pedmanson : RUUT Pictures 2006. Lisaks sõnum "Miljonäri äriimpeerium"

  17. "Siis sõi Sõõrumaa Punamütsikese ka ära..." / Jüri Muttika

    Index Scriptorium Estoniae

    Muttika, Jüri

    2006-01-01

    Mängufilm või pseudodokumentaalfilm "Hundi agoonia", mis valminud ärimees Urmas Sõõrumaa tellimustööna turvafirma Falck 15-ks sünnipäevaks : režissöör Asko Kase, produtsent Artur Talvik, stsenarist Peep Pedmanson : RUUT Pictures 2006. Lisaks tutvustus "Hundi agoonia"

  18. "Kõrini" filmist ei saa poolteise tunni jooksul kõrini / Piret Linnamägi

    Index Scriptorium Estoniae

    Linnamägi, Piret

    2006-01-01

    Esilinastus Eesti-Saksa koostööfilm "Kõrini" : režissöör Peeter Simm : osades Maarja Jakobson, Rasmus Kaljujärv, Heio von Stetten, Thomas Schmauser : Ruut Pictures (Eesti) - Saxonia Film (Saksa) 2005. Filmist rääkisid režissöör, produtsent Artur Talvik. Filmi sisust

  19. Reis Rosenbergi ajudesse / Vaapo Vaher

    Index Scriptorium Estoniae

    Vaher, Vaapo, 1945-

    2007-01-01

    Lugemismuljeid raamatutest: Piper, Ernst. Alfred Rosenberg : Hitleri peaideoloog. Tallinn : Tänapäev, 2007 ; Judt, Tony. Pärast sõda. Euroopa ajalugu 1945. aastast. Tallinn : Varrak, 2007 ; Döblin, Alfred. Berliin, Alexanderplatz / tlk. Mati Sirkel. Tallinn : Tänapäev, 2007 ; Adson, Artur. Siuru-raamat. Tallinn : Tänapäev, 2007

  20. Manhattanilt Tartu tahahoovi / Vaapo Vaher

    Index Scriptorium Estoniae

    Vaher, Vaapo, 1945-

    2008-01-01

    Tutvustus: Dos Passos, John. Manhattan Transfer / tlk. Olavi Teppan. Tallinn : Tänapäev, 2007 ; Betti Alver : usutlused. Kirjad. Päevikukatked. Mälestused / koostanud ja toimetanud Kristi Metste, Enn Lillemets. Tallinn : Tänapäev, 2007 ; Artur Alliksaar mälestustes / koostanud Henn-Kaarel Hellat. Tartu : Ilmamaa, 2007. Ka kirjastusest Ilmamaa

  1. Prezentatsija fotovõstavki v klube Astoria Palace

    Index Scriptorium Estoniae

    2007-01-01

    Fotograafide Artur Sadovski ja Indrek Galetini fotonäituse "Eludraama" esitlus koostöös moekunstnik Marin Sillaga Tallinna ööklubis Astoria Palace. Alates 13. augustist eksponeeritakse Sadovski ja Galetini fotosid Rahvusraamatukogus. Lisatud 8 värvifotot

  2. Dynamics on the Riemann Sphere

    DEFF Research Database (Denmark)

    Petersen, Carsten Lunde

    Collection of research papers on holomorphic dynamical systems with an introduction to Bodil Branners works on the field. Contributions: John Milnor: On Lattès Maps. Carsten Lunde Petersen and Tan Lei: Branner-Hubbard motions and attracting dynamics. Artur Avila and Mikhail Lyubich: Examples...

  3. Valued Estonian Music CDs

    Index Scriptorium Estoniae

    2004-01-01

    2002. aastal välja antud eesti muusika heliplaatidest Artur Kapp "Symphonische Werke", Eduard Tubin "Symphonies No.9, No.10 and No.11", "Estonian Preludes", "Eesti heliloojad. Hortus Musicus", "Eesti Muusika Päevad", "Tallinn Saxophone Quartet. Estonian Contemporary Music", "Triskele. Kolga-Jaani vaimulikud rahvalaulud", "Helmekaala. Linnupuu Anne", "Modern Fox mängib Raimond Valgret",

  4. Meremehestiilis suvituskorter / Jana Rand

    Index Scriptorium Estoniae

    Rand, Jana, 1963-

    2005-01-01

    Sisearhitektide Irina Sisaski ja Artur Jõe (Sisask Design Studio) kujundatud perekond Bernovski ühetoaline suvituskorter (40 mø) korterelamus Pärnus. Korteri välisseinad on peaaegu tervenesti klaasist. Mööblikomplektid on valmistatud Eestis eritellimuse järgi. Kahetasapinnalist lage kaunistab 17. sajandist pärit merekaart. 9 värv. ill

  5. Olev Remsul kolm raamatut korraga : [vestlus] / Olev Remsu ; üles kirjut. Tarmo Teder

    Index Scriptorium Estoniae

    Remsu, Olev, 1947-

    1997-01-01

    Olev Remsu esitleb 4. dets. 1997 Rahvusraamatukogus oma kolme uut raamatut korraga : näidendit 'Tšingis-khaan on Ungern-Sternberg', sõjaväeteemalist pilaromaani 'Artur Magnussoni suur sõjasuvi' ja publitsistika kogumikku 'Kuidas rikkuda piiri'

  6. Olev Remsu uus raamatukolmik : kirjanikust sõja- ja rännumees / Anneli Aasmäe

    Index Scriptorium Estoniae

    Aasmäe, Anneli, 1973-

    1997-01-01

    Olev Remsu esitles 4. dets. 1997 Rahvusraamatukogus oma kolme uut raamatut korraga : näidendit 'Tšingis-khaan on Ungern-Sternberg', sõjaväeteemalist pilaromaani 'Artur Magnussoni suur sõjasuvi' ja publitsistika kogumikku 'Kuidas rikkuda piiri'

  7. Kumus näeb maailmamuutjaid / Helen Teesalu

    Index Scriptorium Estoniae

    Teesalu, Helen

    2008-01-01

    Maailmamuutjate filmifestival näitab neljal järjestikusel kolmapäeval dokfilme eriliste inimeste erilistest ettevõtmistest. Täna on Kumus Chema Rodrigueze "Raudtee tähed", mida kommenteerivad Eda Mölder ja Artur Taevere

  8. Sotsid said prostitutsiooni ürituse pärast noomida / Eno-Gerrit Link

    Index Scriptorium Estoniae

    Link, Eno-Gerrit

    2006-01-01

    Ilmunud ka: Pärnu Postimees 16. märts lk. 3. Pärnu linnavalitsuse kultuuriosakonna peaspetsialist Tair Anton tegi kaubanduskeskuses Port Artur 2 prostitutsiooni vastu vastu allkirju kogunud sotsiaaldemokraatidele loata avaliku ürituse korraldamise eest suulise märkuse

  9. Kohustuslik lektüür anno 1996 : Kümme raamatut, mis väärivad ostmist ja lugemist / Ülo Tonts

    Index Scriptorium Estoniae

    Tonts, Ülo, 1931-2016

    1996-01-01

    Sisu: Kross, Jaan. Mesmeri ring; Raud, Rein. Kägude öö; Veisserik, Artur. Ma armastasin Eestit; Trummal, Mart. Korduskatse; Toomet, Tiia. Kaltsutitt ja puuhobune; Tuglas, Elo. Tartu päevik; Linda Rummo elust ja lavaelust/ Koost. Lilian Vellerand; Meri, Lennart. Presidendikõned; Priimägi, Linnar. Mälestusi Euroopast; Unt, Mati. Vastne argimütoloogia

  10. Tallinna Lennujaama vana terminali renoveerimine = Renovation of Tallinn Airport's old terminal / Epp Lankots

    Index Scriptorium Estoniae

    Lankots, Epp, 1976-

    2005-01-01

    Arhitektid: Andres Põime, Reet Põime, Tiiu Truus. Tallinna Lennujaama reisijateterminali projekteerisid 1939. a. arhitektid Roman Koolmar ja Artur Jürvetson, hoone valmis Paula Koido rekonstrueerimisprojekti järgi. Ill.: 2 värv. sisevaadet, välisvaade

  11. Koolid saavad tagasi algusaegade väärikuse / Mari Rebane

    Index Scriptorium Estoniae

    Rebane, Mari

    2003-01-01

    Artur Perna projekteeritud Tallinna 21. keskkooli hoone renoveerimisprojekti autor on Raul Järg, sisekujundaja Toomas Korb, lühtrite disainer Tõnis Vellama. Edgar Johan Kuusiku projekteeritud Lenderi tütarlastegümnaasiumi (Tallinna kesklinna vene gümnaasium) renoveerimisprojekti autor on Andres Põime, sisekujundaja Tiiu Truus

  12. Kus tondid Tallinnas pidu peavad?

    Index Scriptorium Estoniae

    2008-01-01

    Lagunevatest hoonetest Tallinnas - end. Kalinini nimeline tehas, Eesti Meremuuseumi alal asuv hoone, Volta tehase hooned Tööstuse tänaval, Keraamikatehase hooned Maleva 2, Patarei vangla, Tina tänava juugendvilla (projekteerijad Karl Burman ja Artur Perna), puitelamu Kadriorus Poska 6

  13. Archtecture According to Children : Tree House World / Pille Runnel

    Index Scriptorium Estoniae

    Runnel, Pille, 1974-

    2015-01-01

    Linnalaste ja -noorte teemalisest näitusest "Niisama linnas" ("Chilling Around the Town") Eesti Rahva Muuseumis 16. mai 2014-11.01 2015. Teostuse on leidnud ka onnikavandite võistlusele auto-onni idee saatnud 10-aastase poisi Artur Soo unistus - "Onn ratastel OÜ" - vanasse veoautosse ehitatud onn

  14. Mitu ooperifantoomi Eesti muusikalilavadele veel mahub? / Andri Maimets

    Index Scriptorium Estoniae

    Maimets, Andri, 1979-

    2008-01-01

    Gaston Leroux' romaani "Ooperifantoom" põhjal tehtud muusikalidest. Tuntuimast muusikalist mis loodud Lloyd Webberi muusikale. 2007. aastal Tallinna linnahallis etendunud Artur Koptiti ja Maury Yestoni muusikalist. 4.-7. detsembrini Rocca al Mare suurhallis etenduvast Ivan Jacobsi muusikalist "Ooperifantoom". Paavo Nõgene kavadest tuua Eestisse Lloyd Webberi "Ooperifantoom"

  15. Parkimismaja tekitab Pärnus paksu verd / Liis Kängsepp

    Index Scriptorium Estoniae

    Kängsepp, Liis, 1981-

    2008-01-01

    Pärnus Lai tn 7 oleva kinnistu detailplaneeringu muudatus võimaldab sinna lisaks parkimismajale rajada ka äripinnad. Kinnistu enampakkumise võitnud WIN Marketsi osanik Rein Kõgel kinnitab, et kaubanduspindade rajamine oli 2006. aasta konkursitingimustesse sisse kirjutatud, konkursil osalenud Port Artur Grupp peab aga detailplaneeringu muutmist konkursi tingimuste rikkumiseks. Kommenteerib Pärnu linnapea Mart Viisitamm

  16. Pärnusse tuleb 17-korruseline hoone

    Index Scriptorium Estoniae

    2007-01-01

    Pärnu linnavalitsus lubas Port Artur Grupil püstitada südalinna Lai t. 10 territooriumile 17-korruselise vabaaja- ja kaubanduskeskuse, mida nägi ette 2006. a. endise REV-i territooriumi hoonestamiseks korraldatud rahvusvahelise arhitektuurikonkursi võidutöö "Flood". Kommenteerib Mart Viisitamm

  17. Igornõi biznes nastupajet / Aleksei Gorpintshenko

    Index Scriptorium Estoniae

    Gorpintshenko, Aleksei

    2006-01-01

    Narva linnavalituse loal on juunis-juulis Narvas avatud mitmeid uusi kasiinosid. Linna arenduse ja ökonoomika ameti direktor Georgi Ignatov vastab küsimustele, mis puudutavad kasiinode avamist. Kommenteerib Narva Linnavolikogu noorsoo- ja lastekaitsekomisjoni esimees Artur Pärnoja

  18. Vtorostepennõje ljudi na ekrane "Tjomnõh notshei" / Boris Tuch

    Index Scriptorium Estoniae

    Tuch, Boris, 1946-

    2001-01-01

    Pimedate Ööde Filmifestivali filme n.ö. "väikestest inimestest" : Kira Muratova "Väikesed inimesed" (Ukraina 2001), Artur Aristakisjani "Koht maa peal" (Venemaa 2001) ja Jan Hrebejk'i "Lahus olles me kaotame" (Tšehhi Vabariik 2000)

  19. President Ilves Aserbaidžaanis

    Index Scriptorium Estoniae

    2009-01-01

    Vabariigi President töövisiidil Aserbaidžaanis 12.-15.01.2009. Eesti president kohtus Aserbaidžaani riigipea Ilham Alijevi ja peaministri Artur Rasizadega. Eesti ja Aserbaidžaani riigipead osalesid ka 13. jaanuaril 2009 Bakuus infotehnoloogia kallakuga ärifoorumi avamisel

  20. Ilvese päästeoperatsioon / Koit Brinkmann

    Index Scriptorium Estoniae

    Brinkmann, Koit

    2009-01-01

    President Toomas Hendrik Ilvese visiidist Aserbaidžaani 2009. a. jaanuaris. Presidenti saatis 20-liikmeline äridelegatsioon. Kohtumisel Aserbaidžaani presidendi Ilham Alijevi ja peaminister Artur Rasizadega tõstatati ühe teemana probleemid Eesti äriliidrite kinnisvaraarendusega

  1. Спасательная операция президента Ильвеса / Койт Бринкманн

    Index Scriptorium Estoniae

    Бринкманн, Койт

    2009-01-01

    President Toomas Hendrik Ilvese visiidist Aserbaidžaani 2009. a. jaanuaris. Presidenti saatis 20-liikmeline äridelegatsioon. Kohtumisel Aserbaidžaani presidendi Ilham Alijevi ja peaminister Artur Rasizadega tõstatati ühe teemana probleemid Eesti äriliidrite kinnisvaraarendusega. Vabariigi President töövisiidil Aserbaidžaanis 12.-15.01.2009

  2. Charms - Kudu - Heinsaar kui sibul - kala - munaroog / Jüri Ehlvest

    Index Scriptorium Estoniae

    Ehlvest, Jüri, 1967-2006

    2005-01-01

    K. Kudust ja tema kolmest lavastusest Tartu Üliõpilasteatri esituses : M. Heinsaar-D. Charms-L. Carroll "Artur ja Paul ehk veidi enne maailma loomist", M. Heinsaar-D. Charms "Joogem äädikat, härrased!" ja D. Charmsi "Jelizaveta Bam"

  3. Meie näitekirjandus aastal 1931 / Ants Oras

    Index Scriptorium Estoniae

    Oras, Ants, 1900-1982

    2009-01-01

    Ülevaade 1931. aasta eesti näitekirjandusest. Pikemalt käsitletakse: Mait Metsanurk "Mässuvaim, ehk, Agulirahvas läheb ajalukku", Hugo Raudsepp "Põrunud aru õnnistus", Agnes Taar "Emake maamuld", Aleksander Antson "Töölise tütar", Artur Adson "Neli kuningat"

  4. PÖFF-i filmiturul Baltic Event sünnivad tuleviku kinomagnetid / Kristiina Davidjants

    Index Scriptorium Estoniae

    Davidjants, Kristiina, 1974-

    2008-01-01

    12. PÖFFiga kaasnes ka Tallinnas 30. novembrist 3. detsembrini toimunud filmiturg Baltic Event, millel stsenaariumi staadiumis olevad filmiprojektid otsivad maailma filmitööstuse esindajatest koostööpartnereid. Eestist osales Jaak Kilmi ja Artur Talviku projekt "Rahad ette"

  5. Arhitektuurivõistlus 21. sajandi kodu Lahemaal

    Index Scriptorium Estoniae

    2012-01-01

    Hinnang peapreemia pälvinud töödele "Ranna-Niidu" (Mikk Mutso), "Sirmik" (Maarja Elm, Sten Ader), "Akupunktuur" (Lidia Zarudnaja, Martin Noorväli, Urmas Paul) ja "Adaptsioon" (Kristjan Tõlk, Olavi Kukk, Heleriin Vaher) ning eripreemia pälvinud töödele "Greg" (Eve Komp, Artur Staškevitš) ja "Potjomkin" (Johan Tali)

  6. 80 aastat tagasi : Mai 1928 / Mati Märtin

    Index Scriptorium Estoniae

    Märtin, Mati

    2008-01-01

    Muusikasündmustest 80 aastat tagasi: Tallinna konservatooriumi IV lennu kontsert-aktusest Estonia kontserdisaalis (esinesid prof. Artur Kapi õpilased), lüürilisest tenorist Rudolf Jõksist, Tallinna Jaani koguduse laulukoori tegemistest, IX üldlaulpeo ettevalmistamisest, August Topman tegi 10. mail luterliku kiriku liturgilise komisjoni koosolekul ettepaneku asutada nelja-aastase kursusega kirikumuusikakool

  7. 80 aastat tagasi : Veebruar 1928 / Mati Märtin

    Index Scriptorium Estoniae

    Märtin, Mati

    2008-01-01

    Muusikasündmustest 80 aastat tagasi: 50aastaseks saanud heliloojast Artur Kapist, Eesti Vabariigi 10. aastapäeva tähistamisest kontserdiga 23. veebr. Tallinna Kaarli kirikus, vaimuliku muusika õhtust 24. veebr. Tallinna Jaani kirikus, Tallinna Meestelaulu Seltsi kontserdist 29. veebr. Kaarli kirikus

  8. Naturen i den estniska poesin : från animism och panteism till zenbuddhism / Andres Ehin

    Index Scriptorium Estoniae

    Ehin, Andres, 1940-2011

    2001-01-01

    Orig.: Loodus eesti luules: animismist ja panteismist kuni zen-buddhismini. Tekstis on rootsikeelseid luulenäiteid järgmiste eesti luuletajate loomingust: Kristjan Jaak Peterson, Karl Eduard Sööt, Ernst Enno, Gustav Suits, Henrik Visnapuu, Villem Ridala, Betti Alver, Uku Masing, Bernard Kangro, Kalju Lepik, Ilmar Laaban, Artur Alliksaar ja Hando Runnel.

  9. DOE Joint Genome Institute 2008 Progress Report

    International Nuclear Information System (INIS)

    Gilbert, David

    2009-01-01

    While initially a virtual institute, the driving force behind the creation of the DOE Joint Genome Institute in Walnut Creek, California in the Fall of 1999 was the Department of Energy's commitment to sequencing the human genome. With the publication in 2004 of a trio of manuscripts describing the finished 'DOE Human Chromosomes', the Institute successfully completed its human genome mission. In the time between the creation of the Department of Energy Joint Genome Institute (DOE JGI) and completion of the Human Genome Project, sequencing and its role in biology spread to fields extending far beyond what could be imagined when the Human Genome Project first began. Accordingly, the targets of the DOE JGI's sequencing activities changed, moving from a single human genome to the genomes of large numbers of microbes, plants, and other organisms, and the community of users of DOE JGI data similarly expanded and diversified. Transitioning into operating as a user facility, the DOE JGI modeled itself after other DOE user facilities, such as synchrotron light sources and supercomputer facilities, empowering the science of large numbers of investigators working in areas of relevance to energy and the environment. The JGI's approach to being a user facility is based on the concept that by focusing state-of-the-art sequencing and analysis capabilities on the best peer-reviewed ideas drawn from a broad community of scientists, the DOE JGI will effectively encourage creative approaches to DOE mission areas and produce important science. This clearly has occurred, only partially reflected in the fact that the DOE JGI has played a major role in more than 45 papers published in just the past three years alone in Nature and Science. The involvement of a large and engaged community of users working on important problems has helped maximize the impact of JGI science. A seismic technological change is presently underway at the JGI. The Sanger capillary-based sequencing process that

  10. DOE Joint Genome Institute 2008 Progress Report

    Energy Technology Data Exchange (ETDEWEB)

    Gilbert, David

    2009-03-12

    While initially a virtual institute, the driving force behind the creation of the DOE Joint Genome Institute in Walnut Creek, California in the Fall of 1999 was the Department of Energy's commitment to sequencing the human genome. With the publication in 2004 of a trio of manuscripts describing the finished 'DOE Human Chromosomes', the Institute successfully completed its human genome mission. In the time between the creation of the Department of Energy Joint Genome Institute (DOE JGI) and completion of the Human Genome Project, sequencing and its role in biology spread to fields extending far beyond what could be imagined when the Human Genome Project first began. Accordingly, the targets of the DOE JGI's sequencing activities changed, moving from a single human genome to the genomes of large numbers of microbes, plants, and other organisms, and the community of users of DOE JGI data similarly expanded and diversified. Transitioning into operating as a user facility, the DOE JGI modeled itself after other DOE user facilities, such as synchrotron light sources and supercomputer facilities, empowering the science of large numbers of investigators working in areas of relevance to energy and the environment. The JGI's approach to being a user facility is based on the concept that by focusing state-of-the-art sequencing and analysis capabilities on the best peer-reviewed ideas drawn from a broad community of scientists, the DOE JGI will effectively encourage creative approaches to DOE mission areas and produce important science. This clearly has occurred, only partially reflected in the fact that the DOE JGI has played a major role in more than 45 papers published in just the past three years alone in Nature and Science. The involvement of a large and engaged community of users working on important problems has helped maximize the impact of JGI science. A seismic technological change is presently underway at the JGI. The Sanger capillary

  11. Fungal Genomics for Energy and Environment

    Energy Technology Data Exchange (ETDEWEB)

    Grigoriev, Igor V.

    2013-03-11

    Genomes of fungi relevant to energy and environment are in focus of the Fungal Genomic Program at the US Department of Energy Joint Genome Institute (JGI). One of its projects, the Genomics Encyclopedia of Fungi, targets fungi related to plant health (symbionts, pathogens, and biocontrol agents) and biorefinery processes (cellulose degradation, sugar fermentation, industrial hosts) by means of genome sequencing and analysis. New chapters of the Encyclopedia can be opened with user proposals to the JGI Community Sequencing Program (CSP). Another JGI project, the 1000 fungal genomes, explores fungal diversity on genome level at scale and is open for users to nominate new species for sequencing. Over 200 fungal genomes have been sequenced by JGI to date and released through MycoCosm (www.jgi.doe.gov/fungi), a fungal web-portal, which integrates sequence and functional data with genome analysis tools for user community. Sequence analysis supported by functional genomics leads to developing parts list for complex systems ranging from ecosystems of biofuel crops to biorefineries. Recent examples of such parts suggested by comparative genomics and functional analysis in these areas are presented here.

  12. Fueling the Future with Fungal Genomes

    Energy Technology Data Exchange (ETDEWEB)

    Grigoriev, Igor V.

    2014-10-27

    Genomes of fungi relevant to energy and environment are in focus of the JGI Fungal Genomic Program. One of its projects, the Genomics Encyclopedia of Fungi, targets fungi related to plant health (symbionts and pathogens) and biorefinery processes (cellulose degradation and sugar fermentation) by means of genome sequencing and analysis. New chapters of the Encyclopedia can be opened with user proposals to the JGI Community Science Program (CSP). Another JGI project, the 1000 fungal genomes, explores fungal diversity on genome level at scale and is open for users to nominate new species for sequencing. Over 400 fungal genomes have been sequenced by JGI to date and released through MycoCosm (www.jgi.doe.gov/fungi), a fungal web-portal, which integrates sequence and functional data with genome analysis tools for user community. Sequence analysis supported by functional genomics will lead to developing parts list for complex systems ranging from ecosystems of biofuel crops to biorefineries. Recent examples of such ‘parts’ suggested by comparative genomics and functional analysis in these areas are presented here.

  13. IMG 4 version of the integrated microbial genomes comparative analysis system

    Science.gov (United States)

    Markowitz, Victor M.; Chen, I-Min A.; Palaniappan, Krishna; Chu, Ken; Szeto, Ernest; Pillay, Manoj; Ratner, Anna; Huang, Jinghua; Woyke, Tanja; Huntemann, Marcel; Anderson, Iain; Billis, Konstantinos; Varghese, Neha; Mavromatis, Konstantinos; Pati, Amrita; Ivanova, Natalia N.; Kyrpides, Nikos C.

    2014-01-01

    The Integrated Microbial Genomes (IMG) data warehouse integrates genomes from all three domains of life, as well as plasmids, viruses and genome fragments. IMG provides tools for analyzing and reviewing the structural and functional annotations of genomes in a comparative context. IMG’s data content and analytical capabilities have increased continuously since its first version released in 2005. Since the last report published in the 2012 NAR Database Issue, IMG’s annotation and data integration pipelines have evolved while new tools have been added for recording and analyzing single cell genomes, RNA Seq and biosynthetic cluster data. Different IMG datamarts provide support for the analysis of publicly available genomes (IMG/W: http://img.jgi.doe.gov/w), expert review of genome annotations (IMG/ER: http://img.jgi.doe.gov/er) and teaching and training in the area of microbial genome analysis (IMG/EDU: http://img.jgi.doe.gov/edu). PMID:24165883

  14. IMG: the integrated microbial genomes database and comparative analysis system

    Science.gov (United States)

    Markowitz, Victor M.; Chen, I-Min A.; Palaniappan, Krishna; Chu, Ken; Szeto, Ernest; Grechkin, Yuri; Ratner, Anna; Jacob, Biju; Huang, Jinghua; Williams, Peter; Huntemann, Marcel; Anderson, Iain; Mavromatis, Konstantinos; Ivanova, Natalia N.; Kyrpides, Nikos C.

    2012-01-01

    The Integrated Microbial Genomes (IMG) system serves as a community resource for comparative analysis of publicly available genomes in a comprehensive integrated context. IMG integrates publicly available draft and complete genomes from all three domains of life with a large number of plasmids and viruses. IMG provides tools and viewers for analyzing and reviewing the annotations of genes and genomes in a comparative context. IMG's data content and analytical capabilities have been continuously extended through regular updates since its first release in March 2005. IMG is available at http://img.jgi.doe.gov. Companion IMG systems provide support for expert review of genome annotations (IMG/ER: http://img.jgi.doe.gov/er), teaching courses and training in microbial genome analysis (IMG/EDU: http://img.jgi.doe.gov/edu) and analysis of genomes related to the Human Microbiome Project (IMG/HMP: http://www.hmpdacc-resources.org/img_hmp). PMID:22194640

  15. Genomic Encyclopedia of Fungi

    Energy Technology Data Exchange (ETDEWEB)

    Grigoriev, Igor

    2012-08-10

    Genomes of fungi relevant to energy and environment are in focus of the Fungal Genomic Program at the US Department of Energy Joint Genome Institute (JGI). Its key project, the Genomics Encyclopedia of Fungi, targets fungi related to plant health (symbionts, pathogens, and biocontrol agents) and biorefinery processes (cellulose degradation, sugar fermentation, industrial hosts), and explores fungal diversity by means of genome sequencing and analysis. Over 150 fungal genomes have been sequenced by JGI to date and released through MycoCosm (www.jgi.doe.gov/fungi), a fungal web-portal, which integrates sequence and functional data with genome analysis tools for user community. Sequence analysis supported by functional genomics leads to developing parts list for complex systems ranging from ecosystems of biofuel crops to biorefineries. Recent examples of such parts suggested by comparative genomics and functional analysis in these areas are presented here.

  16. A Taste of Algal Genomes from the Joint Genome Institute

    Energy Technology Data Exchange (ETDEWEB)

    Kuo, Alan; Grigoriev, Igor

    2012-06-17

    Algae play profound roles in aquatic food chains and the carbon cycle, can impose health and economic costs through toxic blooms, provide models for the study of symbiosis, photosynthesis, and eukaryotic evolution, and are candidate sources for bio-fuels; all of these research areas are part of the mission of DOE's Joint Genome Institute (JGI). To date JGI has sequenced, assembled, annotated, and released to the public the genomes of 18 species and strains of algae, sampling almost all of the major clades of photosynthetic eukaryotes. With more algal genomes currently undergoing analysis, JGI continues its commitment to driving forward basic and applied algal science. Among these ongoing projects are the pan-genome of the dominant coccolithophore Emiliania huxleyi, the interrelationships between the 4 genomes in the nucleomorph-containing Bigelowiella natans and Guillardia theta, and the search for symbiosis genes of lichens.

  17. IMG 4 version of the integrated microbial genomes comparative analysis system

    Energy Technology Data Exchange (ETDEWEB)

    Markowitz, Victor M. [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Biological Data Management and Technology Center. Computational Research Division; Chen, I-Min A. [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Biological Data Management and Technology Center. Computational Research Division; Palaniappan, Krishna [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Biological Data Management and Technology Center. Computational Research Division; Chu, Ken [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Biological Data Management and Technology Center. Computational Research Division; Szeto, Ernest [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Biological Data Management and Technology Center. Computational Research Division; Pillay, Manoj [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Biological Data Management and Technology Center. Computational Research Division; Ratner, Anna [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Biological Data Management and Technology Center. Computational Research Division; Huang, Jinghua [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Biological Data Management and Technology Center. Computational Research Division; Woyke, Tanja [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States). Microbial Genome and Metagenome Program; Huntemann, Marcel [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States). Microbial Genome and Metagenome Program; Anderson, Iain [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States). Microbial Genome and Metagenome Program; Billis, Konstantinos [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States). Microbial Genome and Metagenome Program; Varghese, Neha [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States). Microbial Genome and Metagenome Program; Mavromatis, Konstantinos [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States). Microbial Genome and Metagenome Program; Pati, Amrita [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States). Microbial Genome and Metagenome Program; Ivanova, Natalia N. [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States). Microbial Genome and Metagenome Program; Kyrpides, Nikos C. [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States). Microbial Genome and Metagenome Program

    2013-10-27

    The Integrated Microbial Genomes (IMG) data warehouse integrates genomes from all three domains of life, as well as plasmids, viruses and genome fragments. IMG provides tools for analyzing and reviewing the structural and functional annotations of genomes in a comparative context. IMG’s data content and analytical capabilities have increased continuously since its first version released in 2005. Since the last report published in the 2012 NAR Database Issue, IMG’s annotation and data integration pipelines have evolved while new tools have been added for recording and analyzing single cell genomes, RNA Seq and biosynthetic cluster data. Finally, different IMG datamarts provide support for the analysis of publicly available genomes (IMG/W: http://img.jgi.doe.gov/w), expert review of genome annotations (IMG/ER: http://img.jgi.doe.gov/er) and teaching and training in the area of microbial genome analysis (IMG/EDU: http://img.jgi.doe.gov/edu).

  18. Phytozome Comparative Plant Genomics Portal

    Energy Technology Data Exchange (ETDEWEB)

    Goodstein, David; Batra, Sajeev; Carlson, Joseph; Hayes, Richard; Phillips, Jeremy; Shu, Shengqiang; Schmutz, Jeremy; Rokhsar, Daniel

    2014-09-09

    The Dept. of Energy Joint Genome Institute is a genomics user facility supporting DOE mission science in the areas of Bioenergy, Carbon Cycling, and Biogeochemistry. The Plant Program at the JGI applies genomic, analytical, computational and informatics platforms and methods to: 1. Understand and accelerate the improvement (domestication) of bioenergy crops 2. Characterize and moderate plant response to climate change 3. Use comparative genomics to identify constrained elements and infer gene function 4. Build high quality genomic resource platforms of JGI Plant Flagship genomes for functional and experimental work 5. Expand functional genomic resources for Plant Flagship genomes

  19. 2013 Progress Report -- DOE Joint Genome Institute

    Energy Technology Data Exchange (ETDEWEB)

    None

    2013-11-01

    In October 2012, we introduced a 10-Year Strategic Vision [http://bit.ly/JGI-Vision] for the Institute. A central focus of this Strategic Vision is to bridge the gap between sequenced genomes and an understanding of biological functions at the organism and ecosystem level. This involves the continued massive-scale generation of sequence data, complemented by orthogonal new capabilities to functionally annotate these large sequence data sets. Our Strategic Vision lays out a path to guide our decisions and ensure that the evolving set of experimental and computational capabilities available to DOE JGI users will continue to enable groundbreaking science.

  20. 2012 U.S. Department of Energy: Joint Genome Institute: Progress Report

    Energy Technology Data Exchange (ETDEWEB)

    Gilbert, David [DOE JGI Public Affairs Manager

    2013-01-01

    The mission of the U.S. Department of Energy Joint Genome Institute (DOE JGI) is to serve the diverse scientific community as a user facility, enabling the application of large-scale genomics and analysis of plants, microbes, and communities of microbes to address the DOE mission goals in bioenergy and the environment. The DOE JGI's sequencing efforts fall under the Eukaryote Super Program, which includes the Plant and Fungal Genomics Programs; and the Prokaryote Super Program, which includes the Microbial Genomics and Metagenomics Programs. In 2012, several projects made news for their contributions to energy and environment research.

  1. Short outlines of books by Estonian authors / Rutt Hinrikus, Janika Kronberg

    Index Scriptorium Estoniae

    Hinrikus, Rutt, 1946-

    1997-01-01

    Traat, Mats. Peremees võtab naise; Raudam, Toomas. Muusika kuum sai; Baturin, Nikolai. Ringi vangid; Õunapuu, Ervin. Olivia. Meistriklass; Mattheus, Ülo. Läheb ega peatu; Nõu, Enn. Kojutulek; Valton, Arvo. Väike ilus vangimaja; Unt, Mati. Brecht ilmub öösel; Alliksaar, Artur. Päikesepillaja; Kareva, Doris. Hingring; Kaplinski, Jaan. See ja teine; Hellerma, Kärt. Alkeemia

  2. Searching for a legitimate television journalism: quality criteria in the critic work of Arthur da Távola in the 1970s

    Directory of Open Access Journals (Sweden)

    Fernanda Mauricio da Silva

    2014-07-01

    Full Text Available In the 1970s, the TV reviews published by Artur da Távola rose a new discursive place for TV journalism: instead of the approach with an impoverishing entertainment, a legitimate discourse through technology. This article discusses how Távola legitimated television journalism through a discourse of quality compared to other media, showing power struggles around the representation of reality, emotional speech and compared with everyday life.

  3. Ülehomme mälestatakse muusikaõppejõude / Silja Joon

    Index Scriptorium Estoniae

    Joon, Silja, 1966-

    2009-01-01

    EMTA mälestusküünalde projekti käigus mälestab Pärnu Muusikakooli pere 27. septembril Alevi kalmistul Eesti Muusika- ja Teatriakadeemia õppejõude: tšello eriala professorit Raimond Bööcket (1871-1940), laulu eriala professorit Nikolai Sternberg-Gorskit (1856-1944) ja muusikateoreetiliste ainete õppejõudu Artur Uritamme (1901-1982)

  4. [Määramised

    Index Scriptorium Estoniae

    2006-01-01

    Ametisse määramised: Kaitseliidu ülem major Raivo Lumiste; Maaväe staabi ülem kolonelleitnant Indrek Sirel; Kaitsejõudude peastaabi personaliosakonna ülem kolonelleitnant Vahur Väljamäe; 1. jalaväebrigaadi ülem kolonelleitnant Artur Tiganik; Scoutspataljoni ülem major Aivar Kokka; Kaitseväe peakaplan major Taavi Laanepere. Haridus, sõjaline kvalifikatsioon, teenistuskäik, auastmed, autasud

  5. Gauge Integral

    Directory of Open Access Journals (Sweden)

    Coghetto Roland

    2017-10-01

    Full Text Available Some authors have formalized the integral in the Mizar Mathematical Library (MML. The first article in a series on the Darboux/Riemann integral was written by Noboru Endou and Artur Korniłowicz: [6]. The Lebesgue integral was formalized a little later [13] and recently the integral of Riemann-Stieltjes was introduced in the MML by Keiko Narita, Kazuhisa Nakasho and Yasunari Shidama [12].

  6. Kaleidoskoop vanalinna korteritest

    Index Scriptorium Estoniae

    1999-01-01

    Tallinna vanalinna renoveeritud majadest, kus müüakse elanikele kortereid. Toom-Kooli 2, Viru 1/ Vene 4 (ehitati 1881, arhitekt Rudolf Otto Knüpffer), Vene 19, Pikk 30, Pikk 40 (1922 ehitati ümber arhitekt Artur Perna projekti järgi, ajaloomälestis), Rataskaevu 9 asuvate renoveeritud hoonete ajaloost, pakutavate korterite suurus, hinnad. Kommenteerivad: J. Laugus, T. Tarum kinnisvarabüroost Uus Maa, H. Leppsalu kinnisvarafirmast Ober Haus

  7. Vaba mõtte filmid / Raimo Jõerand

    Index Scriptorium Estoniae

    Jõerand, Raimo, 1970-

    2009-01-01

    Lähima poole aasta jooksul esilinastuvatest Eesti dokumentaalfilmidest : Peeter Brambati "Kosmos'68", Jaan Tootseni-Jaak Kilmi "Uus maailm", Juri Hatšavatski-Marianna Kaati "Ajuoperatsioon", Ilmar Raagi-Kiur Aarma "September", Marianne Kõrveri "7 motiivi", Kristiina Davidjantsi "Palusalu", Liina Triškina-Indrek Treufeldti "1939", Mihkel Kärmase-Rasmus Kagge "Riigireetur", Artur Talviku "Baruto - tõlkes kaduma läinud"

  8. Dictionnaire biographique des musiciens / Baker, Theodore, Slonimsky, Nicolas

    Index Scriptorium Estoniae

    Baker, Theodore

    1995-01-01

    Eesti muusikutest: Aarne, Els (lk. 1). Aav, Evald (1). Aavik, Juhan (2). Eller, Heino (1149). Ernesaks, Gustav (1180). Järvi, Neeme (1951). Kapp. Artur (2036). Kapp, Eugen (2036). Kapp, Villem (2037). Kasemets, Udo (2050-2051). Mägi [Myagi], Ester (2923). Pärt, Arvo (3114-3115). Rääts, Jaan (3321). Saar, Mart (3558). Sumera, Lepo (4099). Tamberg, Eino (4151). Tobias, Rudolf (4240). Tubin, Eduard (4288)

  9. Ilves rõhutas Aserbaidžaani tähtsust

    Index Scriptorium Estoniae

    2009-01-01

    Kohtumisel Aserbaidžaani peaministri Artur Rasizadega tunnustas president Toomas Hendrik Ilves Aserbaidžaani tähtsust Euroopa Liidu energiapartnerina ja rõhutas Eesti ettevõtjate huvi investeerida Aserbaidžaani info- ja kommunikatsioonivaldkonda ning kinnisvara ja infrastruktuuri arendusprojektidesse. Juuresoleval fotol president T. H. Ilves koos Aserbaidžaani presidendi Ilham Alijeviga. Vabariigi President töövisiidil Aserbaidžaanis 12.-15.01.2009

  10. Videokunst pärast videokunsti : Pärnu filmi- ja videofestival detsembris 2009 / Raivo Kelomees

    Index Scriptorium Estoniae

    Kelomees, Raivo, 1960-

    2010-01-01

    15. Pärnu filmi- ja videofestival 2009 Port Artur 2 kaubanduskeskuses. Esitatud tööde autorid loetletud. 5. 12. 2009 toimunud rahvusvahelisest konverentsist "Videokunst pärast videokunsti", kus arutleti video nüüdisaegse olukorra üle. Al Paldroki, Raivo Kelomehe, Teijo Pellineni (Soome), Chris Halesi (Inglismaa), Indrek Grigori, Silja Saarepuu ja Hans-Gunter Locki mõtteavaldustest

  11. Let's Refuse to Be What We Are (Supposed to Be)! / Airi Triisberg

    Index Scriptorium Estoniae

    Triisberg, Airi, 1982-

    2010-01-01

    Rahvusvaheline kaasaegse kunsti näitus "Räägime rahvuslusest! Ideoloogia ja identiteedi vahel" ("Let's Talk About Nationalism! Between Ideology and Identity") Kumu Kunstimuuseumis 5.02.-25.04.2010. Kuraator Rael Artel. Katarina Zdjelari (Rotterdam), Tanja Muravskaja (Eesti), Jens Haaningu (Kopenhaagen), Artur Żmijewski (Varssavi), Joanna Rajkowska (Varssavi) ja John Phillip Mäkineni (Helsingi) töödest näitusel

  12. Madagascar Conservation & Development: Journal Sponsorship

    African Journals Online (AJOL)

    Madagascar Wildlife Conservation/JGI Switzerland. ISSN: 1662-2510. AJOL African Journals Online. HOW TO USE AJOL... for Researchers · for Librarians · for Authors · FAQ's · More about AJOL · AJOL's Partners · Terms and Conditions of Use · Contact AJOL · News. OTHER RESOURCES... for Researchers · for Journals ...

  13. The Role of Drosophila Merlin in the Control of Mitosis Exit and Development

    Science.gov (United States)

    2008-07-01

    chrysosporium --- http://genome.jgi-p Aspergillus flavus --- http://www.tigr.or Arabidopsis thaliana --- http://www.tigr.or Oryza sativa --- http...distinguish colon and ovarian adenocarcinomas: identi- fication, genomic, proteomic , and tissue array profiling. Cancer Res 2003;63:5243–50. 108

  14. Metagenomics, metaMicrobesOnline and Kbase Data Integration (MICW - Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)

    Energy Technology Data Exchange (ETDEWEB)

    Dehal, Paramvir

    2011-10-12

    Berkeley Lab's Paramvir Dehal on "Managing and Storing large Datasets in MicrobesOnline, metaMicrobesOnline and the DOE Knowledgebase" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

  15. Assembly, Annotation, and Analysis of Multiple Mycorrhizal Fungal Genomes

    Energy Technology Data Exchange (ETDEWEB)

    Initiative Consortium, Mycorrhizal Genomics; Kuo, Alan; Grigoriev, Igor; Kohler, Annegret; Martin, Francis

    2013-03-08

    Mycorrhizal fungi play critical roles in host plant health, soil community structure and chemistry, and carbon and nutrient cycling, all areas of intense interest to the US Dept. of Energy (DOE) Joint Genome Institute (JGI). To this end we are building on our earlier sequencing of the Laccaria bicolor genome by partnering with INRA-Nancy and the mycorrhizal research community in the MGI to sequence and analyze dozens of mycorrhizal genomes of all Basidiomycota and Ascomycota orders and multiple ecological types (ericoid, orchid, and ectomycorrhizal). JGI has developed and deployed high-throughput sequencing techniques, and Assembly, RNASeq, and Annotation Pipelines. In 2012 alone we sequenced, assembled, and annotated 12 draft or improved genomes of mycorrhizae, and predicted ~;;232831 genes and ~;;15011 multigene families, All of this data is publicly available on JGI MycoCosm (http://jgi.doe.gov/fungi/), which provides access to both the genome data and tools with which to analyze the data. Preliminary comparisons of the current total of 14 public mycorrhizal genomes suggest that 1) short secreted proteins potentially involved in symbiosis are more enriched in some orders than in others amongst the mycorrhizal Agaricomycetes, 2) there are wide ranges of numbers of genes involved in certain functional categories, such as signal transduction and post-translational modification, and 3) novel gene families are specific to some ecological types.

  16. MetaVelvet: An Extension of Velvet Assembler to de novo Metagenome Assembly from Short Sequence Reads (Metagenomics Informatics Challenges Workshop: 10K Genomes at a Time)

    Energy Technology Data Exchange (ETDEWEB)

    Sakakibara, Yasumbumi

    2011-10-13

    Keio University's Yasumbumi Sakakibara on "MetaVelvet: An Extension of Velvet Assembler to de novo Metagenome Assembly from Short Sequence Reads" at the Metagenomics Informatics Challenges Workshop held at the DOE JGI on October 12-13, 2011.

  17. MycoCosm, an Integrated Fungal Genomics Resource

    Energy Technology Data Exchange (ETDEWEB)

    Shabalov, Igor; Grigoriev, Igor

    2012-03-16

    MycoCosm is a web-based interactive fungal genomics resource, which was first released in March 2010, in response to an urgent call from the fungal community for integration of all fungal genomes and analytical tools in one place (Pan-fungal data resources meeting, Feb 21-22, 2010, Alexandria, VA). MycoCosm integrates genomics data and analysis tools to navigate through over 100 fungal genomes sequenced at JGI and elsewhere. This resource allows users to explore fungal genomes in the context of both genome-centric analysis and comparative genomics, and promotes user community participation in data submission, annotation and analysis. MycoCosm has over 4500 unique visitors/month or 35000+ visitors/year as well as hundreds of registered users contributing their data and expertise to this resource. Its scalable architecture allows significant expansion of the data expected from JGI Fungal Genomics Program, its users, and integration with external resources used by fungal community.

  18. Plataforma logística de Leixões

    OpenAIRE

    Pereira, Judite Filomena Soares

    2014-01-01

    Dissertação apresentada ao Instituto Politécnico do Porto para obtenção do Grau de Mestre em Logística Orientador: Prof. Doutor José António Baptista da Costa Coorientador: Engenheiro Artur Machado de Campos Rangel Nota: 16 valores O fenómeno da globalização nas economias contribui para as grandes alterações que se verificam nas redes e nas soluções de transporte e de abastecimento tornando-se assim cada vez mais importante o transporte integrado num conceito de Logística. ...

  19. Kollektiivne töö ja eksperimentaalreaalsus / Rael Artel

    Index Scriptorium Estoniae

    Artel, Rael, 1980-

    2007-01-01

    16. VI-23. IX 2007 avatud Kasseli XII "Documenta" töödest: Artur Zmijewski (sünd. 1966) videost "Them", Johanna Billingi (sünd. 1973) videost "This is How We Walk on the Moon", Yael Bartana (sünd. 1970) videost "Summer Camp". Münsteri skulptuuriprojekti Guy Ben-Neri (sünd. 1969) videoinstallatsioonist "I'd give it to your if I could but I borrowed it", mis viitab tagasipööratud ready-made'ile

  20. Värvikas Riigikogu / Lylian Meister

    Index Scriptorium Estoniae

    Meister, Lylian, 1966-

    2007-01-01

    1920-1922 Herbert Johansoni ja Eugen Habermanni projekti järgi ehitatud Riigikogu hoonest. Saaliavade ja aknapõskede kujundamisel oli abiks Jaan Koort. 1935. a. rajati Alar Kotli projekti järgi lossi lõunatiib.Valge saal rekonstrueeriti 1936. a. Artur Perna ja Johann Ostrati kavandite järgi. Eesti taasiseseisvumise järel on hoonet Mart Kalmu, Leila Pärtelpoja, Mari ja Kaarel Kurismaa ning Ülar Saare juhendamisel renoveeritud. Riigikogu esimehe kabineti vaiba (1938) kavandas Adamson-Eric, kontorimööbli kujundasid 1997. a. EKA sisearhitektuuri üliõpilased L. Pärtelpoja juhendamisel. 23 ill

  1. 80 aastat tagasi : Märts 1928 / Mati Märtin

    Index Scriptorium Estoniae

    Märtin, Mati

    2008-01-01

    Muusikasündmustest 80 aastat tagasi: 50aastaseks saanud heliloojast Artur Kapist ja juubelikontserdist 11. märtsil Estonia kontserdisaalis, Tallinna Jaani koguduse laulukoori kontserdist Enn Võrgu ja Rudolf Tobiase loominguga 16. märtsil Estonia teatri proovisaalis, R. Tobiase kantaadi"Johannes Damaskusest" ettekandest 19. märtsil Tallinnas Jaani kirikus, Ilo lauluseltsi koori kontserdist 25. märtsil Tallinnas Jaani kirikus (ettekandel Enrico Bossi teos "Canticum canticorum", dirigent Dionyssi Orgussaar), peakoosolekust 25. märtsil Tartu Ülikooli koguduse lauluseltsis Cantate Dominum

  2. Genome analysis methods: Physcomitrella patens [PGDBj Registered plant list, Marker list, QTL list, Plant DB link and Genome analysis methods[Archive

    Lifescience Database Archive (English)

    Full Text Available Physcomitrella patens Finished n=27 511 Mb 2008 Sanger (WGS) ... 480 Mb 8.6x release ...2.9.3 of Jazz 1,985 (v1.6) ... BLAST, Genewise, Fgenesh+ 32,272 (v1.6) JGI; http://www.phytozome.net/physcomitrella v1.1 v1.6 10.1126/science.1150646 18079367 10.1186/1471-2164-14-498 ...

  3. Genome analysis methods: Arabidopsis lyrata [PGDBj Registered plant list, Marker list, QTL list, Plant DB link and Genome analysis methods[Archive

    Lifescience Database Archive (English)

    Full Text Available (http://genome.imim.es/software/geneid/) applying dicot and A. thaliana specific matrices 32,670 (v1.0) JGI; http://www.phytozome.net/alyrata v1.0 v1.0 10.1038/ng.807 21478890 ... ...8.3x Arachne 1,309 ... Fgenesh package of ab initio and homology-based gene predictors, EuGene12, and GeneID13

  4. Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger

    OpenAIRE

    Wright, James C.; Sugden, Deana; Francis-McIntyre, Sue; Riba Garcia, Isabel; Gaskell, Simon J.; Grigoriev, Igor V.; Baker, Scott E.; Beynon, Robert J.; Hubbard, Simon J.

    2009-01-01

    Abstract Background Proteomic data is a potentially rich, but arguably unexploited, data source for genome annotation. Peptide identifications from tandem mass spectrometry provide prima facie evidence for gene predictions and can discriminate over a set of candidate gene models. Here we apply this to the recently sequenced Aspergillus niger fungal genome from the Joint Genome Institutes (JGI) and another predicted protein set from another A.niger sequence. Tandem mass spectra (MS/MS) were ac...

  5. Genome analysis methods: Sorghum bicolor [PGDBj Registered plant list, Marker list, QTL list, Plant DB link and Genome analysis methods[Archive

    Lifescience Database Archive (English)

    Full Text Available Sorghum bicolor Finished 2n=20 760 Mb 2009 Sanger (Clone-based) 10,717,203 reads 7...30 Mb 8.5x Arachne2 v.20060705 3,304 12,873 BLAST, GenomeScan 34,496 (Sbi1.4) JGI; http://www.phytozome.net/sorghum Sbi1 Sbi1.4 10.1038/nature07723 19189423 ...

  6. Exploration of Metagenome Assemblies with an Interactive Visualization Tool

    Energy Technology Data Exchange (ETDEWEB)

    Cantor, Michael; Nordberg, Henrik; Smirnova, Tatyana; Andersen, Evan; Tringe, Susannah; Hess, Matthias; Dubchak, Inna

    2014-07-09

    Metagenomics, one of the fastest growing areas of modern genomic science, is the genetic profiling of the entire community of microbial organisms present in an environmental sample. Elviz is a web-based tool for the interactive exploration of metagenome assemblies. Elviz can be used with publicly available data sets from the Joint Genome Institute or with custom user-loaded assemblies. Elviz is available at genome.jgi.doe.gov/viz

  7. Phylogeonomics and Ecogenomics of the Mycorrhizal Symbiosis

    Energy Technology Data Exchange (ETDEWEB)

    Kuo, Alan; Grigoriev, Igor V.; Kohler, Annegret; Martin, Francis

    2013-05-23

    Mycorrhizal fungi play critical roles in host plant health, soil community structure and chemistry, and carbon and nutrient cycling, all areas of intense interest to the US Dept. of Energy (DOE) Joint Genome Institute (JGI). To this end we are building on our earlier sequencing of the Laccaria bicolor genome by partnering with INRA-Nancy and the mycorrhizal research community in the MGI to sequence and analyze 2 dozen mycorrhizal genomes of numerous known mycorrhizal orders and several ecological types (ectomycorrhizal [ECM], ericoid, orchid, and arbuscular). JGI has developed and deployed high-throughput pipelines for genomic, transcriptomic, and re-sequencing, and platforms for assembly, annotation, and analysis. In the last 2 years we have sequenced 21 genomes of mycorrhizal fungi, and resequenced 6 additional strains of L. bicolor. Most of this data is publicly available on JGI MycoCosm?s Mycorrhizal Fungi Portal (http://jgi.doe.gov/Mycorrhizal_fungi/), which provides access to both the genome data and tools with which to analyze the data. These data allow us to address long-standing issues in mycorrhizal evolution and ecology. For example, a major observation of mycorrhizal evolution is that each of the major ecological types appears to have evolved independently in multiple fungal clades. Using an ecogenomic approach we provide preliminary evidence that 2 clades (Cantharellales and Sebacinales) of a single symbiotic ecotype (orchid) utilize some common regulatory (protein tyrosine kinase) and metabolic (lipase) paths, the latter of which may be the product of HGT. Using a phylogenomic approach we provide preliminary evidence that a particular ecotype (ericoid) may have evolved more than once within a major clade (Leotiomycetes).

  8. Assembled genomic and tissue-specific transcriptomic data resources for two genetically distinct lines of Cowpea ( Vigna unguiculata (L.) Walp).

    Science.gov (United States)

    Spriggs, Andrew; Henderson, Steven T; Hand, Melanie L; Johnson, Susan D; Taylor, Jennifer M; Koltunow, Anna

    2018-02-09

    Cowpea ( Vigna unguiculata (L.) Walp) is an important legume crop for food security in areas of low-input and smallholder farming throughout Africa and Asia. Genetic improvements are required to increase yield and resilience to biotic and abiotic stress and to enhance cowpea crop performance. An integrated cowpea genomic and gene expression data resource has the potential to greatly accelerate breeding and the delivery of novel genetic traits for cowpea. Extensive genomic resources for cowpea have been absent from the public domain; however, a recent early release reference genome for IT97K-499-35 ( Vigna unguiculata  v1.0, NSF, UCR, USAID, DOE-JGI, http://phytozome.jgi.doe.gov/) has now been established in a collaboration between the Joint Genome Institute (JGI) and University California (UC) Riverside. Here we release supporting genomic and transcriptomic data for IT97K-499-35 and a second transformable cowpea variety, IT86D-1010. The transcriptome resource includes six tissue-specific datasets for each variety, with particular emphasis on reproductive tissues that extend and support the V. unguiculata v1.0 reference. Annotations have been included in our resource to allow direct mapping to the v1.0 cowpea reference. Access to this resource provided here is supported by raw and assembled data downloads.

  9. Preliminary High-Throughput Metagenome Assembly

    Energy Technology Data Exchange (ETDEWEB)

    Dusheyko, Serge; Furman, Craig; Pangilinan, Jasmyn; Shapiro, Harris; Tu, Hank

    2007-03-26

    Metagenome data sets present a qualitatively different assembly problem than traditional single-organism whole-genome shotgun (WGS) assembly. The unique aspects of such projects include the presence of a potentially large number of distinct organisms and their representation in the data set at widely different fractions. In addition, multiple closely related strains could be present, which would be difficult to assemble separately. Failure to take these issues into account can result in poor assemblies that either jumble together different strains or which fail to yield useful results. The DOE Joint Genome Institute has sequenced a number of metagenomic projects and plans to considerably increase this number in the coming year. As a result, the JGI has a need for high-throughput tools and techniques for handling metagenome projects. We present the techniques developed to handle metagenome assemblies in a high-throughput environment. This includes a streamlined assembly wrapper, based on the JGI?s in-house WGS assembler, Jazz. It also includes the selection of sensible defaults targeted for metagenome data sets, as well as quality control automation for cleaning up the raw results. While analysis is ongoing, we will discuss preliminary assessments of the quality of the assembly results (http://fames.jgi-psf.org).

  10. Fungal Genomics Program

    Energy Technology Data Exchange (ETDEWEB)

    Grigoriev, Igor

    2012-03-12

    The JGI Fungal Genomics Program aims to scale up sequencing and analysis of fungal genomes to explore the diversity of fungi important for energy and the environment, and to promote functional studies on a system level. Combining new sequencing technologies and comparative genomics tools, JGI is now leading the world in fungal genome sequencing and analysis. Over 120 sequenced fungal genomes with analytical tools are available via MycoCosm (www.jgi.doe.gov/fungi), a web-portal for fungal biologists. Our model of interacting with user communities, unique among other sequencing centers, helps organize these communities, improves genome annotation and analysis work, and facilitates new larger-scale genomic projects. This resulted in 20 high-profile papers published in 2011 alone and contributing to the Genomics Encyclopedia of Fungi, which targets fungi related to plant health (symbionts, pathogens, and biocontrol agents) and biorefinery processes (cellulose degradation, sugar fermentation, industrial hosts). Our next grand challenges include larger scale exploration of fungal diversity (1000 fungal genomes), developing molecular tools for DOE-relevant model organisms, and analysis of complex systems and metagenomes.

  11. Diplomacia e fiasco. Repensando a participação brasileira na Liga das Nações: elementos para uma nova interpretação

    Directory of Open Access Journals (Sweden)

    Norma Breda dos Santos

    2003-12-01

    Full Text Available O principal objetivo do presente estudo é o de demonstrar que a historiografia brasileira tem magnificado a responsabilidade brasileira nos acontecimentos de março de 1926 na Liga das Nações e que se concentra demasiadamente nas motivações do governo de Artur Bernardes, sem considerar aspectos decisivos concernentes à política internacional, notadamente a européia, e questões de ordem institucional próprias da Liga. Portanto, parece mais do que importante inserir internacionalmente a diplomacia de Bernardes, ou seja, pensá-la no contexto do fiasco da própria diplomacia internacional, dos "vinte anos de crise".The main objective of the present study is to demonstrate that the Brazilian historiography has magnified the Brazilian responsibility in the events of March 1926, in the League of Nations. It overconcentrates on the motivations of the government of Artur Bernardes, without considering decisive aspects related to the international politics, specially the European international politics, and institutional issues of the League itself. Thus, it seems more important to look the Brazilian diplomacy from an international perspective, that is, to think about it in the context of the "fiasco" of international diplomacy itself, in the time of "the twenty years crisis".

  12. The integrated microbial genome resource of analysis.

    Science.gov (United States)

    Checcucci, Alice; Mengoni, Alessio

    2015-01-01

    Integrated Microbial Genomes and Metagenomes (IMG) is a biocomputational system that allows to provide information and support for annotation and comparative analysis of microbial genomes and metagenomes. IMG has been developed by the US Department of Energy (DOE)-Joint Genome Institute (JGI). IMG platform contains both draft and complete genomes, sequenced by Joint Genome Institute and other public and available genomes. Genomes of strains belonging to Archaea, Bacteria, and Eukarya domains are present as well as those of viruses and plasmids. Here, we provide some essential features of IMG system and case study for pangenome analysis.

  13. Complete genome sequence of Serratia plymuthica strain AS12

    Energy Technology Data Exchange (ETDEWEB)

    Neupane, Saraswoti [Uppsala University, Uppsala, Sweden; Finlay, Roger D. [Uppsala University, Uppsala, Sweden; Alstrom, Sadhna [Uppsala University, Uppsala, Sweden; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Peters, Lin [U.S. Department of Energy, Joint Genome Institute; Ovchinnikova, Galina [U.S. Department of Energy, Joint Genome Institute; Chertkov, Olga [Los Alamos National Laboratory (LANL); Han, James [U.S. Department of Energy, Joint Genome Institute; Han, Cliff [Los Alamos National Laboratory (LANL); Tapia, Roxanne [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Pagani, Ioanna [U.S. Department of Energy, Joint Genome Institute; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Hogberg, Nils [Uppsala University, Uppsala, Sweden

    2012-01-01

    A plant associated member of the family Enterobacteriaceae, Serratia plymuthica strain AS12 was isolated from rapeseed roots. It is of scientific interest due to its plant growth promoting and plant pathogen inhibiting ability. The genome of S. plymuthica AS12 comprises a 5,443,009 bp long circular chromosome, which consists of 4,952 protein-coding genes, 87 tRNA genes and 7 rRNA operons. This genome was sequenced within the 2010 DOE-JGI Community Sequencing Program (CSP2010) as part of the project entitled 'Genomics of four rapeseed plant growth promoting bacteria with antagonistic effect on plant pathogens'.

  14. Complete genome sequence of the plant-associated Serratia plymuthica strain AS13

    Energy Technology Data Exchange (ETDEWEB)

    Neupane, Saraswoti [Uppsala University, Uppsala, Sweden; Finlay, Roger D. [Uppsala University, Uppsala, Sweden; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Alstrom, Sadhna [Uppsala University, Uppsala, Sweden; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Land, Miriam L [ORNL; Han, James [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Peters, Lin [U.S. Department of Energy, Joint Genome Institute; Ovchinnikova, Galina [U.S. Department of Energy, Joint Genome Institute; Held, Brittany [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Detter, J C [U.S. Department of Energy, Joint Genome Institute; Tapia, Roxanne [Los Alamos National Laboratory (LANL); Hauser, Loren John [ORNL; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Pagani, Ioanna [U.S. Department of Energy, Joint Genome Institute; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Hogberg, Nils [Uppsala University, Uppsala, Sweden

    2012-01-01

    Serratia plymuthica AS13 is a plant-associated Gammaproteobacteria, isolated from rapeseed roots. It is of special interest because of its ability to inhibit fungal pathogens of rapeseed and to promote plant growth. The complete genome of S. plymuthica AS13 consists of a 5,442,549 bp circular chromosome. The chromosome contains 4,951 protein-coding genes, 87 tRNA genes and 7 rRNA operons. This genome was sequenced as part of the project enti- tled Genomics of four rapeseed plant growth promoting bacteria with antagonistic effect on plant pathogens within the 2010 DOE-JGI Community Sequencing Program (CSP2010).

  15. Communication Received from the Permanent Mission of Brazil regarding Certain Member States' Guidelines for the Export of Nuclear Material, Equipment and Technology

    International Nuclear Information System (INIS)

    2008-01-01

    The Agency has received a Note Verbale from the Permanent Mission of Brazil, dated 22 March 2007, in which it requests that the Agency circulate to all Member States a letter of 12 December 2006 from the Chairman of the Nuclear Suppliers Group, Ambassador Jose Artur Denot Medeiros, to the Director General, on behalf of the Governments of Argentina, Australia, Austria, Belarus, Belgium, Brazil, Bulgaria, Canada, China, Croatia, Cyprus, Czech Republic, Denmark, Estonia, Finland, France, Germany, Greece, Hungary, Ireland, Italy, Japan, Kazakhstan, Republic of Korea, Latvia, Lithuania, Luxemburg, Malta, Netherlands, New Zealand, Norway, Poland, Portugal, Romania, Russian Federation, Slovakia, Slovenia, South Africa, Spain, Sweden, Switzerland, Turkey, Ukraine, the United Kingdom of Great Britain and Northern Ireland and the United States of America, providing further information on those Governments' Guidelines for Nuclear Transfers [es

  16. Communication Received from the Permanent Mission of Brazil regarding Certain Member States' Guidelines for the Export of Nuclear Material, Equipment and Technology

    International Nuclear Information System (INIS)

    2007-01-01

    The Agency has received a Note Verbale from the Permanent Mission of Brazil, dated 22 March 2007, in which it requests that the Agency circulate to all Member States a letter of 12 December 2006 from the Chairman of the Nuclear Suppliers Group, Ambassador Jose Artur Denot Medeiros, to the Director General, on behalf of the Governments of Argentina, Australia, Austria, Belarus, Belgium, Brazil, Bulgaria, Canada, China, Croatia, Cyprus, Czech Republic, Denmark, Estonia, Finland, France, Germany, Greece, Hungary, Ireland, Italy, Japan, Kazakhstan, Republic of Korea, Latvia, Lithuania, Luxemburg, Malta, Netherlands, New Zealand, Norway, Poland, Portugal, Romania, Russian Federation, Slovakia, Slovenia, South Africa, Spain, Sweden, Switzerland, Turkey, Ukraine, the United Kingdom of Great Britain and Northern Ireland and the United States of America, providing further information on those Governments' Guidelines for Nuclear Transfers

  17. Les différentes échelles de l’espace de la villégiature balnéaire : l’exemple de la côte d’Emeraude

    Directory of Open Access Journals (Sweden)

    Isabelle Barbedor

    2012-04-01

    Full Text Available Figure 1Extrait de : France. Inventaire général des monuments et des richesses artistiques de la France. Service régional de Bretagne. La côte d’Emeraude. La villégiature balnéaire autour de Dinard et Saint-Malo. Réd. I. Barbedor, G. Delignon, V. Orain, J.-J. Rioult. Editions du patrimoine, 2001. (coll. Cahiers du Patrimoine, n° 60. Page de couverture. Dinard, villa Greystones, le porte-à-faux du grand salon. Michel Roux-Spitz architecte. 1938-1950Cliché Inventaire général, Guy Artur et Norb...

  18. Isto não é uma obra: Arte e ditadura

    Directory of Open Access Journals (Sweden)

    Julia Buenaventura Valencia de Cayses

    2014-04-01

    Full Text Available O presente texto faz um percurso pela arte durante o período da ditadura militar no Brasil, analisando especificamente as propostas de obra como ação ou desmaterialização da obra de arte. Partindo da arte abstrata dos anos 1950 e 1960, da teoria do não objeto de Ferreira Gullar e das propostas do crítico Mário Pedrosa, o ensaio aborda obras de Willys de Castro, Ligya Clark, Artur Barrio, Cildo Meireles, Antônio Manuel e o grupo 3Nós3, assim como faz uma incursão pelo chamado boicote à Bienal de São Paulo de 1969.

  19. Caracterização geoecológica como subsídio para estudos ambientais em RPPNs: estudos de casos no Paraná

    Directory of Open Access Journals (Sweden)

    Maristela Moresco Mezzomo

    2014-10-01

    Full Text Available A caracterização do meio físico de unidades de conservação apresenta-se como importante aspecto para o planejamento de ações de gestão ambiental, devendo, inclusive, constar no plano de manejo. Porém, muitas unidades de conservação não contam com esse plano. Nessa perspectiva, este artigo apresenta a técnica de caracterização geoecológica, por meio da construção de perfis geoecológicos, como método para o levantamento e reconhecimento do meio físico de unidade de conservação, em especial para Reservas Particulares do Patrimônio Natural (RPPNs. Este estudo foi aplicado nas RPPNs Artur Cesar Vigilato/Fazenda Santa Terezinha e Artur Cesar Vigilato/Fazenda Mangueira, localizadas, respectivamente, nos Municípios de Luiziana e Campo Mourão, Estado do Paraná. Os resultados possibilitaram reconhecer como é a organização vertical e horizontal dos elementos da paisagem das áreas, os quais foram representados visualmente nos perfis geoecológicos. Além disso, foi possível compreender a dinâmica das RPPNs, no que tange aos riscos ambientais, possibilitando a organização de informações e dados que poderão subsidiar outros estudos ambientais.

  20. Anníbal marques da costa e a "matemática em versos e prosas": histórias da matemática na são joão del-rei do início do século XX Anníbal Marques da Costa and the "Matemática em versos e prosas": histories of mathematics in Sao João del-Rei in the early twentieth century

    Directory of Open Access Journals (Sweden)

    Romélia Mara Alves Souto

    2011-01-01

    Full Text Available Neste artigo, apresentamos os resultados de um estudo analítico-descritivo que realizamos da obra "Matemática em versos e prosas", de Anníbal Marques da Costa, encontrada no acervo do Clube Teatral Artur Azevedo, na Universidade Federal de São João del-Rei (UFSJ, em Minas Gerais. A obra é um manuscrito, em dois volumes, produzida entre 1942 e 1954, que, com explícita intenção de divulgação da matemática, embora nunca tenha sido impressa, trata de conceitos e propriedades da matemática elementar. A investigação possibilitou-nos elaborar uma descrição seguida de uma análise histórica e crítica do texto, que foi enriquecida pelo acréscimo de algumas informações sobre o autor e a época em que ele viveu.This paper presents the results of an analytical-descriptive study of the book "Matemática em versos e prosas" by Anníbal Marques da Costa, found in Clube Teatral Artur Azevedo, archives from the Universidade Federal de São João del-Rei (UFSJ, in Minas Gerais. The book has never been published and is a manuscript in two volumes produced between 1942 and 1954 aiming to promote Mathematics. It deals with the concepts and properties of elementary mathematics. The research enabled the development of a description and a historical and critical analysis of the text, enriched by some information about the author and the time he lived.

  1. Communication Received from the Permanent Mission of Brazil regarding Certain Member States' Guidelines for the Export of Nuclear Material, Equipment and Technology; Comunicacion recibida de la Mision Permanente del Brasil relativa a las directrices de ciertos Estados Miembros para la exportacion de materiales, equipos y tecnologia nucleares

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2008-07-16

    The Agency has received a Note Verbale from the Permanent Mission of Brazil, dated 22 March 2007, in which it requests that the Agency circulate to all Member States a letter of 12 December 2006 from the Chairman of the Nuclear Suppliers Group, Ambassador Jose Artur Denot Medeiros, to the Director General, on behalf of the Governments of Argentina, Australia, Austria, Belarus, Belgium, Brazil, Bulgaria, Canada, China, Croatia, Cyprus, Czech Republic, Denmark, Estonia, Finland, France, Germany, Greece, Hungary, Ireland, Italy, Japan, Kazakhstan, Republic of Korea, Latvia, Lithuania, Luxemburg, Malta, Netherlands, New Zealand, Norway, Poland, Portugal, Romania, Russian Federation, Slovakia, Slovenia, South Africa, Spain, Sweden, Switzerland, Turkey, Ukraine, the United Kingdom of Great Britain and Northern Ireland and the United States of America, providing further information on those Governments' Guidelines for Nuclear Transfers [Spanish] El Organismo ha recibido una nota verbal de la Mision Permanente del Brasil, de fecha 22 de marzo de 2007, en la que le solicita que distribuya a todos los Estados Miembros una carta de 12 de diciembre de 2006 enviada al Director General por el Presidente del Grupo de Suministradores Nucleares, el Embajador Jose Artur Denot Medeiros, en nombre de los Gobiernos de Alemania, Argentina, Australia, Austria, Belarus, Belgica, Brasil, Bulgaria, Canada, Croacia, China, Chipre, Dinamarca, Eslovaquia, Eslovenia, Espana, Estados Unidos de America, Estonia, Federacion de Rusia, Finlandia, Francia, Grecia, Hungria, Irlanda, Italia, Japon, Kazajstan, Letonia, Lituania, Luxemburgo, Malta, Noruega, Nueva Zelandia, Paises Bajos, Polonia, Portugal, Reino Unido de Gran Bretana e Irlanda del Norte, Republica Checa, Republica de Corea, Rumania, Sudafrica, Suecia, Suiza, Turquia y Ucrania, por la que se proporciona mas informacion sobre las Directrices de esos Gobiernos para las transferencias nucleares.

  2. Communication Received from the Permanent Mission of Brazil regarding Certain Member States' Guidelines for the Export of Nuclear Material, Equipment and Technology; Communication recue de la mission permanente du Bresil concernant les Directives de certains Etats Membres applicables a l'exportation de matieres, d'equipements et de technologie nucleaires

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2007-12-03

    The Agency has received a Note Verbale from the Permanent Mission of Brazil, dated 22 March 2007, in which it requests that the Agency circulate to all Member States a letter of 12 December 2006 from the Chairman of the Nuclear Suppliers Group, Ambassador Jose Artur Denot Medeiros, to the Director General, on behalf of the Governments of Argentina, Australia, Austria, Belarus, Belgium, Brazil, Bulgaria, Canada, China, Croatia, Cyprus, Czech Republic, Denmark, Estonia, Finland, France, Germany, Greece, Hungary, Ireland, Italy, Japan, Kazakhstan, Republic of Korea, Latvia, Lithuania, Luxemburg, Malta, Netherlands, New Zealand, Norway, Poland, Portugal, Romania, Russian Federation, Slovakia, Slovenia, South Africa, Spain, Sweden, Switzerland, Turkey, Ukraine, the United Kingdom of Great Britain and Northern Ireland and the United States of America, providing further information on those Governments' Guidelines for Nuclear Transfers [French] L'Agence a recu une note verbale de la mission permanente du Bresil, en date du 22 mars 2007, lui demandant de diffuser a tous les Etats Membres une lettre du 12 decembre 2006 du president du Groupe des fournisseurs nucleaires, l'ambassadeur Artur Denot Medeiros, adressee au Directeur general au nom des gouvernements des Etats suivants : Afrique du Sud, Allemagne, Argentine, Australie, Autriche, Belarus, Belgique, Bresil, Bulgarie, Canada, Chine, Chypre, Croatie, Danemark, Espagne, Estonie, Etats-Unis d'Amerique, Federation de Russie, Finlande, France, Grece, Hongrie, Irlande, Italie, Japon, Kazakhstan, Lettonie, Lituanie, Luxembourg, Malte, Norvege, Nouvelle-Zelande, Pays-Bas, Pologne, Portugal, Republique de Coree, Republique tcheque, Roumanie, Royaume-Uni de Grande-Bretagne et d'Irlande du Nord, Slovaquie, Slovenie, Suede, Suisse, Turquie et Ukraine. Cette lettre apporte des informations supplementaires sur les Directives de ces gouvernements applicables aux transferts nucleaires.

  3. Current Developments in Prokaryotic Single Cell Whole Genome Amplification

    Energy Technology Data Exchange (ETDEWEB)

    Goudeau, Danielle; Nath, Nandita; Ciobanu, Doina; Cheng, Jan-Fang; Malmstrom, Rex

    2014-03-14

    Our approach to prokaryotic single-cell Whole Genome Amplification at the JGI continues to evolve. To increase both the quality and number of single-cell genomes produced, we explore all aspects of the process from cell sorting to sequencing. For example, we now utilize specialized reagents, acoustic liquid handling, and reduced reaction volumes eliminate non-target DNA contamination in WGA reactions. More specifically, we use a cleaner commercial WGA kit from Qiagen that employs a UV decontamination procedure initially developed at the JGI, and we use the Labcyte Echo for tip-less liquid transfer to set up 2uL reactions. Acoustic liquid handling also dramatically reduces reagent costs. In addition, we are exploring new cell lysis methods including treatment with Proteinase K, lysozyme, and other detergents, in order to complement standard alkaline lysis and allow for more efficient disruption of a wider range of cells. Incomplete lysis represents a major hurdle for WGA on some environmental samples, especially rhizosphere, peatland, and other soils. Finding effective lysis strategies that are also compatible with WGA is challenging, and we are currently assessing the impact of various strategies on genome recovery.

  4. Medical and Biohazardous Waste Generator's Guide (Revision 2)

    International Nuclear Information System (INIS)

    Waste Management Group

    2006-01-01

    These guidelines describe procedures to comply with all Federal and State laws and regulations and Lawrence Berkeley National Laboratory (LBNL) policy applicable to State-regulated medical and unregulated, but biohazardous, waste (medical/biohazardous waste). These guidelines apply to all LBNL personnel who: (1) generate and/or store medical/biohazardous waste, (2) supervise personnel who generate medical/biohazardous waste, or (3) manage a medical/biohazardous waste pickup location. Personnel generating biohazardous waste at the Joint Genome Institute/Production Genomics Facility (JGI/PGF) are referred to the guidelines contained in Section 9. Section 9 is the only part of these guidelines that apply to JGI/PGF. Medical/biohazardous waste referred to in this Web site includes biohazardous, sharps, pathological and liquid waste. Procedures for proper storage and disposal are summarized in the Solid Medical/Biohazardous Waste Disposal Procedures Chart. Contact the Waste Management Group at 486-7663 if you have any questions regarding medical/biohazardous waste management

  5. Medical and Biohazardous Waste Generator's Guide (Revision2)

    Energy Technology Data Exchange (ETDEWEB)

    Waste Management Group

    2006-11-29

    These guidelines describe procedures to comply with all Federal and State laws and regulations and Lawrence Berkeley National Laboratory (LBNL) policy applicable to State-regulated medical and unregulated, but biohazardous, waste (medical/biohazardous waste). These guidelines apply to all LBNL personnel who: (1) generate and/or store medical/biohazardous waste, (2) supervise personnel who generate medical/biohazardous waste, or (3) manage a medical/biohazardous waste pickup location. Personnel generating biohazardous waste at the Joint Genome Institute/Production Genomics Facility (JGI/PGF) are referred to the guidelines contained in Section 9. Section 9 is the only part of these guidelines that apply to JGI/PGF. Medical/biohazardous waste referred to in this Web site includes biohazardous, sharps, pathological and liquid waste. Procedures for proper storage and disposal are summarized in the Solid Medical/Biohazardous Waste Disposal Procedures Chart. Contact the Waste Management Group at 486-7663 if you have any questions regarding medical/biohazardous waste management.

  6. MEETING: Chlamydomonas Annotation Jamboree - October 2003

    Energy Technology Data Exchange (ETDEWEB)

    Grossman, Arthur R

    2007-04-13

    Shotgun sequencing of the nuclear genome of Chlamydomonas reinhardtii (Chlamydomonas throughout) was performed at an approximate 10X coverage by JGI. Roughly half of the genome is now contained on 26 scaffolds, all of which are at least 1.6 Mb, and the coverage of the genome is ~95%. There are now over 200,000 cDNA sequence reads that we have generated as part of the Chlamydomonas genome project (Grossman, 2003; Shrager et al., 2003; Grossman et al. 2007; Merchant et al., 2007); other sequences have also been generated by the Kasuza sequence group (Asamizu et al., 1999; Asamizu et al., 2000) or individual laboratories that have focused on specific genes. Shrager et al. (2003) placed the reads into distinct contigs (an assemblage of reads with overlapping nucleotide sequences), and contigs that group together as part of the same genes have been designated ACEs (assembly of contigs generated from EST information). All of the reads have also been mapped to the Chlamydomonas nuclear genome and the cDNAs and their corresponding genomic sequences have been reassembled, and the resulting assemblage is called an ACEG (an Assembly of contiguous EST sequences supported by genomic sequence) (Jain et al., 2007). Most of the unique genes or ACEGs are also represented by gene models that have been generated by the Joint Genome Institute (JGI, Walnut Creek, CA). These gene models have been placed onto the DNA scaffolds and are presented as a track on the Chlamydomonas genome browser associated with the genome portal (http://genome.jgi-psf.org/Chlre3/Chlre3.home.html). Ultimately, the meeting grant awarded by DOE has helped enormously in the development of an annotation pipeline (a set of guidelines used in the annotation of genes) and resulted in high quality annotation of over 4,000 genes; the annotators were from both Europe and the USA. Some of the people who led the annotation initiative were Arthur Grossman, Olivier Vallon, and Sabeeha Merchant (with many individual

  7. Improving Microbial Genome Annotations in an Integrated Database Context

    Science.gov (United States)

    Chen, I-Min A.; Markowitz, Victor M.; Chu, Ken; Anderson, Iain; Mavromatis, Konstantinos; Kyrpides, Nikos C.; Ivanova, Natalia N.

    2013-01-01

    Effective comparative analysis of microbial genomes requires a consistent and complete view of biological data. Consistency regards the biological coherence of annotations, while completeness regards the extent and coverage of functional characterization for genomes. We have developed tools that allow scientists to assess and improve the consistency and completeness of microbial genome annotations in the context of the Integrated Microbial Genomes (IMG) family of systems. All publicly available microbial genomes are characterized in IMG using different functional annotation and pathway resources, thus providing a comprehensive framework for identifying and resolving annotation discrepancies. A rule based system for predicting phenotypes in IMG provides a powerful mechanism for validating functional annotations, whereby the phenotypic traits of an organism are inferred based on the presence of certain metabolic reactions and pathways and compared to experimentally observed phenotypes. The IMG family of systems are available at http://img.jgi.doe.gov/. PMID:23424620

  8. The Chlamydomonas genome project: a decade on

    Science.gov (United States)

    Blaby, Ian K.; Blaby-Haas, Crysten; Tourasse, Nicolas; Hom, Erik F. Y.; Lopez, David; Aksoy, Munevver; Grossman, Arthur; Umen, James; Dutcher, Susan; Porter, Mary; King, Stephen; Witman, George; Stanke, Mario; Harris, Elizabeth H.; Goodstein, David; Grimwood, Jane; Schmutz, Jeremy; Vallon, Olivier; Merchant, Sabeeha S.; Prochnik, Simon

    2014-01-01

    The green alga Chlamydomonas reinhardtii is a popular unicellular organism for studying photosynthesis, cilia biogenesis and micronutrient homeostasis. Ten years since its genome project was initiated, an iterative process of improvements to the genome and gene predictions has propelled this organism to the forefront of the “omics” era. Housed at Phytozome, the Joint Genome Institute’s (JGI) plant genomics portal, the most up-to-date genomic data include a genome arranged on chromosomes and high-quality gene models with alternative splice forms supported by an abundance of RNA-Seq data. Here, we present the past, present and future of Chlamydomonas genomics. Specifically, we detail progress on genome assembly and gene model refinement, discuss resources for gene annotations, functional predictions and locus ID mapping between versions and, importantly, outline a standardized framework for naming genes. PMID:24950814

  9. IMG-ABC: An Atlas of Biosynthetic Gene Clusters to Fuel the Discovery of Novel Secondary Metabolites

    Energy Technology Data Exchange (ETDEWEB)

    Chen, I-Min; Chu, Ken; Ratner, Anna; Palaniappan, Krishna; Huang, Jinghua; Reddy, T. B.K.; Cimermancic, Peter; Fischbach, Michael; Ivanova, Natalia; Markowitz, Victor; Kyrpides, Nikos; Pati, Amrita

    2014-10-28

    In the discovery of secondary metabolites (SMs), large-scale analysis of sequence data is a promising exploration path that remains largely underutilized due to the lack of relevant computational resources. We present IMG-ABC (https://img.jgi.doe.gov/abc/) -- An Atlas of Biosynthetic gene Clusters within the Integrated Microbial Genomes (IMG) system1. IMG-ABC is a rich repository of both validated and predicted biosynthetic clusters (BCs) in cultured isolates, single-cells and metagenomes linked with the SM chemicals they produce and enhanced with focused analysis tools within IMG. The underlying scalable framework enables traversal of phylogenetic dark matter and chemical structure space -- serving as a doorway to a new era in the discovery of novel molecules.

  10. The Integrated Microbial Genomes (IMG) System: An Expanding Comparative Analysis Resource

    Energy Technology Data Exchange (ETDEWEB)

    Markowitz, Victor M.; Chen, I-Min A.; Palaniappan, Krishna; Chu, Ken; Szeto, Ernest; Grechkin, Yuri; Ratner, Anna; Anderson, Iain; Lykidis, Athanasios; Mavromatis, Konstantinos; Ivanova, Natalia N.; Kyrpides, Nikos C.

    2009-09-13

    The integrated microbial genomes (IMG) system serves as a community resource for comparative analysis of publicly available genomes in a comprehensive integrated context. IMG contains both draft and complete microbial genomes integrated with other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. IMG provides tools and viewers for analyzing and reviewing the annotations of genes and genomes in a comparative context. Since its first release in 2005, IMG's data content and analytical capabilities have been constantly expanded through regular releases. Several companion IMG systems have been set up in order to serve domain specific needs, such as expert review of genome annotations. IMG is available at jgi.doe.gov>.

  11. Improving microbial genome annotations in an integrated database context.

    Directory of Open Access Journals (Sweden)

    I-Min A Chen

    Full Text Available Effective comparative analysis of microbial genomes requires a consistent and complete view of biological data. Consistency regards the biological coherence of annotations, while completeness regards the extent and coverage of functional characterization for genomes. We have developed tools that allow scientists to assess and improve the consistency and completeness of microbial genome annotations in the context of the Integrated Microbial Genomes (IMG family of systems. All publicly available microbial genomes are characterized in IMG using different functional annotation and pathway resources, thus providing a comprehensive framework for identifying and resolving annotation discrepancies. A rule based system for predicting phenotypes in IMG provides a powerful mechanism for validating functional annotations, whereby the phenotypic traits of an organism are inferred based on the presence of certain metabolic reactions and pathways and compared to experimentally observed phenotypes. The IMG family of systems are available at http://img.jgi.doe.gov/.

  12. GAViT: Genome Assembly Visualization Tool for Short Read Data

    Energy Technology Data Exchange (ETDEWEB)

    Syed, Aijazuddin; Shapiro, Harris; Tu, Hank; Pangilinan, Jasmyn; Trong, Stephan

    2008-03-14

    It is a challenging job for genome analysts to accurately debug, troubleshoot, and validate genome assembly results. Genome analysts rely on visualization tools to help validate and troubleshoot assembly results, including such problems as mis-assemblies, low-quality regions, and repeats. Short read data adds further complexity and makes it extremely challenging for the visualization tools to scale and to view all needed assembly information. As a result, there is a need for a visualization tool that can scale to display assembly data from the new sequencing technologies. We present Genome Assembly Visualization Tool (GAViT), a highly scalable and interactive assembly visualization tool developed at the DOE Joint Genome Institute (JGI).

  13. Complete genome sequence of the rapeseed plant-growth promoting Serratia plymuthica strain AS9

    Energy Technology Data Exchange (ETDEWEB)

    Neupane, Saraswoti [Uppsala University, Uppsala, Sweden; Hogberg, Nils [Uppsala University, Uppsala, Sweden; Alstrom, Sadhna [Uppsala University, Uppsala, Sweden; Lucas, Susan [U.S. Department of Energy, Joint Genome Institute; Han, James [U.S. Department of Energy, Joint Genome Institute; Lapidus, Alla L. [U.S. Department of Energy, Joint Genome Institute; Cheng, Jan-Fang [U.S. Department of Energy, Joint Genome Institute; Bruce, David [Los Alamos National Laboratory (LANL); Goodwin, Lynne A. [Los Alamos National Laboratory (LANL); Pitluck, Sam [U.S. Department of Energy, Joint Genome Institute; Peters, Lin [U.S. Department of Energy, Joint Genome Institute; Ovchinnikova, Galina [U.S. Department of Energy, Joint Genome Institute; Lu, Megan [Los Alamos National Laboratory (LANL); Han, Cliff [Los Alamos National Laboratory (LANL); Detter, J. Chris [U.S. Department of Energy, Joint Genome Institute; Tapia, Roxanne [Los Alamos National Laboratory (LANL); Fiebig, Anne [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Land, Miriam L [ORNL; Hauser, Loren John [ORNL; Kyrpides, Nikos C [U.S. Department of Energy, Joint Genome Institute; Ivanova, N [U.S. Department of Energy, Joint Genome Institute; Pagani, Ioanna [U.S. Department of Energy, Joint Genome Institute; Klenk, Hans-Peter [DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany; Woyke, Tanja [U.S. Department of Energy, Joint Genome Institute; Finlay, Roger D. [Uppsala University, Uppsala, Sweden

    2012-01-01

    Serratia plymuthica are plant-associated, plant beneficial species belonging to the family Enterobacteriaceae. The members of the genus Serratia are ubiquitous in nature and their life style varies from endophytic to free-living. S. plymuthica AS9 is of special interest for its ability to inhibit fungal pathogens of rapeseed and to promote plant growth. The genome of S. plymuthica AS9 comprises a 5,442,880 bp long circular chromosome that consists of 4,952 protein-coding genes, 87 tRNA genes and 7 rRNA operons. This genome is part of the project entitled Genomics of four rapeseed plant growth promoting bacteria with antagonistic effect on plant pathogens awarded through the 2010 DOE-JGI Community Sequencing Program (CSP2010).

  14. The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and annotation.

    Science.gov (United States)

    Mavromatis, Konstantinos; Land, Miriam L; Brettin, Thomas S; Quest, Daniel J; Copeland, Alex; Clum, Alicia; Goodwin, Lynne; Woyke, Tanja; Lapidus, Alla; Klenk, Hans Peter; Cottingham, Robert W; Kyrpides, Nikos C

    2012-01-01

    The emergence of next generation sequencing (NGS) has provided the means for rapid and high throughput sequencing and data generation at low cost, while concomitantly creating a new set of challenges. The number of available assembled microbial genomes continues to grow rapidly and their quality reflects the quality of the sequencing technology used, but also of the analysis software employed for assembly and annotation. In this work, we have explored the quality of the microbial draft genomes across various sequencing technologies. We have compared the draft and finished assemblies of 133 microbial genomes sequenced at the Department of Energy-Joint Genome Institute and finished at the Los Alamos National Laboratory using a variety of combinations of sequencing technologies, reflecting the transition of the institute from Sanger-based sequencing platforms to NGS platforms. The quality of the public assemblies and of the associated gene annotations was evaluated using various metrics. Results obtained with the different sequencing technologies, as well as their effects on downstream processes, were analyzed. Our results demonstrate that the Illumina HiSeq 2000 sequencing system, the primary sequencing technology currently used for de novo genome sequencing and assembly at JGI, has various advantages in terms of total sequence throughput and cost, but it also introduces challenges for the downstream analyses. In all cases assembly results although on average are of high quality, need to be viewed critically and consider sources of errors in them prior to analysis. These data follow the evolution of microbial sequencing and downstream processing at the JGI from draft genome sequences with large gaps corresponding to missing genes of significant biological role to assemblies with multiple small gaps (Illumina) and finally to assemblies that generate almost complete genomes (Illumina+PacBio).

  15. Australian participation in international intercomparisons of environmental dosemeters

    International Nuclear Information System (INIS)

    Boas, J.F.; David, R.C.; Jones, J.

    2002-01-01

    The Environmental Measurements Laboratory of the U.S. Department of Energy has conducted international intercomparisons of environmental dosemeters at regular intervals since 1974. This paper reports the results obtained in the 10th and 11th intercomparisons by JFB and JGY at the Australian Radiation Laboratory (in 1992 and 1996 respectively) and in the 12th intercomparison by JFB and DRCT at the Australian Radiation Protection and Nuclear Safety Agency and by JGY and JJ at Australian Radiation Serviceces during 2000 and 2001. The ARL/ARPANSA measurements used a simple dosemeter holder containing two CaSO 4 :Dy impregnated Teflon discs, one unshielded and the other shielded by approximately 2.4 mm of Cu. The ARS measurements used a commercially available TLD badge case containing a CaSO 4 :Dy impregnated Teflon card. The commercial badge case was not symmetrical in design. The filtration in the front and rear sections of the commercial badge case varied from an open area to an area shielded by copper, tin and cadmium. The results obtained were generally within ±15% of the reference values measured by EML using high-pressure ionisation chambers for dosemeters exposed hi the field to environmental radiation and for dosemeters given a single exposure to 137 Cs or 241 Am at EML or an associated laboratory. Similar agreement was obtained for dosemeters exposed in the field and also given a single exposure to 137 Cs radiation. In order to obtain this measure of agreement, the dosemeters were individually calibrated and the readouts corrected for fading. Copyright (2002) Australasian Radiation Protection Society Inc

  16. Challenges in Whole-Genome Annotation of Pyrosequenced Eukaryotic Genomes

    Energy Technology Data Exchange (ETDEWEB)

    Kuo, Alan; Grigoriev, Igor

    2009-04-17

    Pyrosequencing technologies such as 454/Roche and Solexa/Illumina vastly lower the cost of nucleotide sequencing compared to the traditional Sanger method, and thus promise to greatly expand the number of sequenced eukaryotic genomes. However, the new technologies also bring new challenges such as shorter reads and new kinds and higher rates of sequencing errors, which complicate genome assembly and gene prediction. At JGI we are deploying 454 technology for the sequencing and assembly of ever-larger eukaryotic genomes. Here we describe our first whole-genome annotation of a purely 454-sequenced fungal genome that is larger than a yeast (>30 Mbp). The pezizomycotine (filamentous ascomycote) Aspergillus carbonarius belongs to the Aspergillus section Nigri species complex, members of which are significant as platforms for bioenergy and bioindustrial technology, as members of soil microbial communities and players in the global carbon cycle, and as agricultural toxigens. Application of a modified version of the standard JGI Annotation Pipeline has so far predicted ~;;10k genes. ~;;12percent of these preliminary annotations suffer a potential frameshift error, which is somewhat higher than the ~;;9percent rate in the Sanger-sequenced and conventionally assembled and annotated genome of fellow Aspergillus section Nigri member A. niger. Also,>90percent of A. niger genes have potential homologs in the A. carbonarius preliminary annotation. Weconclude, and with further annotation and comparative analysis expect to confirm, that 454 sequencing strategies provide a promising substrate for annotation of modestly sized eukaryotic genomes. We will also present results of annotation of a number of other pyrosequenced fungal genomes of bioenergy interest.

  17. Phylogenetic relatedness determined between antibiotic resistance and 16S rRNA genes in actinobacteria.

    Science.gov (United States)

    Sagova-Mareckova, Marketa; Ulanova, Dana; Sanderova, Petra; Omelka, Marek; Kamenik, Zdenek; Olsovska, Jana; Kopecky, Jan

    2015-04-01

    Distribution and evolutionary history of resistance genes in environmental actinobacteria provide information on intensity of antibiosis and evolution of specific secondary metabolic pathways at a given site. To this day, actinobacteria producing biologically active compounds were isolated mostly from soil but only a limited range of soil environments were commonly sampled. Consequently, soil remains an unexplored environment in search for novel producers and related evolutionary questions. Ninety actinobacteria strains isolated at contrasting soil sites were characterized phylogenetically by 16S rRNA gene, for presence of erm and ABC transporter resistance genes and antibiotic production. An analogous analysis was performed in silico with 246 and 31 strains from Integrated Microbial Genomes (JGI_IMG) database selected by the presence of ABC transporter genes and erm genes, respectively. In the isolates, distances of erm gene sequences were significantly correlated to phylogenetic distances based on 16S rRNA genes, while ABC transporter gene distances were not. The phylogenetic distance of isolates was significantly correlated to soil pH and organic matter content of isolation sites. In the analysis of JGI_IMG datasets the correlation between phylogeny of resistance genes and the strain phylogeny based on 16S rRNA genes or five housekeeping genes was observed for both the erm genes and ABC transporter genes in both actinobacteria and streptomycetes. However, in the analysis of sequences from genomes where both resistance genes occurred together the correlation was observed for both ABC transporter and erm genes in actinobacteria but in streptomycetes only in the erm gene. The type of erm resistance gene sequences was influenced by linkage to 16S rRNA gene sequences and site characteristics. The phylogeny of ABC transporter gene was correlated to 16S rRNA genes mainly above the genus level. The results support the concept of new specific secondary metabolite

  18. Genome Sequencing and Comparative Analysis of the Biocontrol Agent Trichoderma harzianum sensu stricto TR274

    Energy Technology Data Exchange (ETDEWEB)

    Steindorff, Andrei S.; Noronha, Elilane F.; Ulhoa, Cirano J.; Kuo, Alan; Salamov, Asaf A.; Haridas, Sajeet; Riley, Robert W.; Druzhinina, Irina S.; Kubicek, Christian P.; Grigoriev, Igor V.

    2015-03-17

    Biological control is a complex process which requires many mechanisms and a high diversity of biochemical pathways. The species of Trichoderma harzianum are well known for their biocontrol activity against many plant pathogens. To gain new insights into the biocontrol mechanism used by T. harzianum, we sequenced the isolate TR274 genome using Illumina. The assembly was performed using AllPaths-LG with a maximum coverage of 100x. The assembly resulted in 2282 contigs with a N50 of 37033bp. The genome size generated was 40.8 Mb and the GC content was 47.7%, similar to other Trichoderma genomes. Using the JGI Annotation Pipeline we predicted 13,932 genes with a high transcriptome support. CEGMA tests suggested 100% genome completeness and 97.9% of RNA-SEQ reads were mapped to the genome. The phylogenetic comparison using orthologous proteins with all Trichoderma genomes sequenced at JGI, corroborates the Trichoderma (T. asperellum and T. atroviride), Longibrachiatum (T. reesei and T. longibrachiatum) and Pachibasium (T. harzianum and T. virens) section division described previously. The comparison between two Trichoderma harzianum species suggests a high genome similarity but some strain-specific expansions. Analyses of the secondary metabolites, CAZymes, transporters, proteases, transcription factors were performed. The Pachybasium section expanded virtually all categories analyzed compared with the other sections, specially Longibrachiatum section, that shows a clear contraction. These results suggests that these proteins families have an important role in their respective phenotypes. Future analysis will improve the understanding of this complex genus and give some insights about its lifestyle and the interactions with the environment.

  19. Re-reading Riegl

    Directory of Open Access Journals (Sweden)

    Matthew Rampley

    2011-12-01

    Full Text Available Review of: Peter Noever, Artur Rosenauer and Georg Vasold, eds, Alois Riegl Revisited. Beiträge zu Werk und Rezeption. Contributions to the Opus and its Reception. Vienna: Österreichische Akademie der Wissenschaften, 2010. Michael S. Falser, Wilfried Lipp, Andrzek Tomaszewski, eds, Conservation and Preservation. Interactions between Theory and Practice. In Memoriam Alois Riegl (1858-1905. Proceedings of the International Conference of the ICOMOS International Scientific Committee for the Theory and the Philosophy of Conservation and Restoration, 23-27 April 2008, Vienna. Florence: Polistampa, 2010. This review examines two recent publications concerned with the legacy of Alois Riegl. It considers these books as examples of the changing landscape of Riegl scholarship, in which the traditional concern with issues of methodology (notably the meaning and function of Riegl’s concept of the Kunstwollen has given way to an engagement with his place in the wider cultural and academic politics of the Habsburg Empire. The review examines Riegl’s engagement with disciplines such as national economy, ethnology, Islamic studies and archaeology.

  20. Learning Information Systems: Designing Education Programs Using Letrinhas

    Directory of Open Access Journals (Sweden)

    Célio Gonçalo Marques

    2017-01-01

    Full Text Available The Letrinhas information system contributes to the improvement of students' reading literacy combining the potential of mobile devices and the specific needs of students and teachers. This information system has emerged within the framework of a partnership established between the Instituto Politécnico de Tomar (IPT and the Artur Gonçalves Cluster of Schools, in Torres Novas, Portugal. After three years of the creation of the tool and its use in a real learning environment, the evaluation already carried out suggests a high degree of satisfaction on the part of teachers and students, as well as a very positive impact on improving the reading skills of the students involved in the project. The latest version of Letrinhas has new features which lead to the specific challenges and needs of the teachers in the above-mentioned cluster of schools. Being so, in addition to the evaluation and improvement of reading skills, the new version provides features that enable the creation of educational scenarios promoting learning environments that enhance, not only the autonomy of students, but also their motivation.

  1. Lastekirjandus vallutab uusi tippe : eesti lastekirjandus 2009 / Jaanus Vaiksoo

    Index Scriptorium Estoniae

    Vaiksoo, Jaanus, 1967-

    2010-01-01

    Ülevaade 2009. aasta eesti lastekirjandusest. Pikemalt käsitletakse järgmisi autoreid ja nende teoseid: Kadi Hinrikus "Kui emad olid väikesed", Kristiina Kass "Peeter ja mina", Mika Keränen "Varastatud oranž jalgratas", Andrus Kivirähk "Kaka ja kevad", Aino Pervik "Ühes väikses veidras linnas", Maarja Undusk "Päkapikk Ingo", Ilmar Tomusk "Vend Johannes", Indrek Koff "Enne kooli", Piret Raud "Härra Linnu lugu", Wimberg "Suur pidusöök", Artur Jurin "Puru kuningriigi lood II", Joonas Sildre "Maailma naba", kogumik "Uued eesti muinasjutud", Aino Pervik "Tirilinna lood", Aimeé Beekman "Päästekoer Walter", Eve Ernis "Karupoeg Nummi seiklused", Priit Aimla "Torisev vanatoi", Juhani Püttsepp "Väikese hundi lood" ja "Lauajupi Madonna", Epp Petrone "Siis, kui seened veel rääkisid", Heiki Vilep "Habemega nali", "Nõiutud linn", Leelo Tungal "Naljatilgad lähevad laulupeole", "Kama üks ja kama kaks", koos Peep Pedmansoniga Miriami lood"(esimene 3D-piltidega lasteraamat), Aidi Vallik "Pints ja Tutsik" 2. osa, Mare Müürsepp "Viis vaba kutsikat", Tiia Selli "Kass Kriibik", Aleksei Turovski "Kassipoeg Võilill", Kaider Vardja "Vana maja lugu", Merca "Mullivesi", Ülle Kütsen "Väike puu ja rändur kuu", Lehte Hainsalu "Mängiks midagi", Peep Veedla "Pöialpoiss"

  2. Subjective-personal readiness of correctional teachers to education of ASD children

    Directory of Open Access Journals (Sweden)

    Kateryna Ostrovska

    2017-07-01

    Full Text Available ASD teachers require skills that go beyond the realm of most educators including professional competences and high moral qualities. In the work theoretical approaches and experimental research on the problem of subjective personality readiness of correctional teachers in the education of ASD children are carried out. The psychological investigation has been conducted including measurement of psychological indices of 40 teachers of ASD children from the boarding school "Trust" and 40 teachers from mainstream schools of Lviv city aged from 28 to 59 years. The following methods are used: "Questionnaire for the measurement of tolerance" (Magun, Zhamkochyan, Magura, 2000; "Shein’s Career Anchors" method aimed at studying the career orientations of the teachers (Shein, 2010; “Diagnostics of empathy level” (Viktor Boiko, 2001; method of study “Motivation professional activities” by Catelin Zamfir in a modification of Artur Rean (Bordovskaya, & Rean, 2001. Based on the provided studies a program for development of subject-personality readiness of the correctional teacher to work with ASD children is proposed. The program consists of the following components: motivational component (professional competence, self-development, self-determination, self-control; cognitive component (intellectual personality autonomy, self-identification, stability, challenge, integration of lifestyles; emotionally-volitional component (empathy, positive attitude toward a child, intellectual analysis of emotions, self-regulation.

  3. Drought in the sertão as a natural or social phenomenon: establishing the Inspetoria Federal de Obras Contra as Secas, 1909-1923

    Directory of Open Access Journals (Sweden)

    Eve Elizabeth Buckley

    2010-01-01

    Full Text Available This paper examines interpretations of the drought problem in Brazil's northeast sertão during the First Republic. It compares analysis of drought as primarily a natural or climatic phenomenon – embraced by civil engineers working for the Inspetoria [Federal] de Obras Contra as Secas (IFOCS – with analyses emphasizing social and political conditions that made drought a crisis for the sertanejo poor. The latter are evident in the report of doctors Belisário Penna and Artur Neiva describing their expedition through the sertão sponsored by IFOCS in 1912. This comparison allows for consideration of the intersection between natural (geographic, climatic and social (political, cultural factors that produced the region's periodic crisis. The analysis is informed by the work of social scientists who highlight the multi-dimensional causes underlying natural disasters in politically marginal communities. Technocrats' faith in the context-independent utility of their expertise lay at the heart of IFOCS's ultimate failure to rescue sertanejos from famine, migration and poverty. Because the drought agency's technical personnel never had the political will or muscle to confront the social organization underlying the sertão's recurrent calamity, their ability to alleviate the human suffering that droughts precipitated was severely limited.

  4. 80 aastat tagasi : Juuli-august 1927 / Mati Märtin

    Index Scriptorium Estoniae

    Märtin, Mati

    2007-01-01

    Muusikasündmustest 80 aastat tagasi: 3. juulil toimus laulupidu Rakveres, Koidu selts korraldas 2. ja 3. juulil Viljandis laulupeo ning Pauluse kirikus esitas Koidu segakoor ja orkester Haydni oratooriumi "Loomine", 10. juulil peeti laulupäev Võrus Kandle aias ja Laiuse laulupäev, laulupäevad toimusid juulis-augustis Jõhvis, Allikul, Pärnus, Jüris, Toilas, Uue-Saaluses, Tapal, Suure-Jaanis, Äksis ja Harglas, 11. juulil Tallinna Rootsi kirikus andis vaimuliku kontserdi laulja Georg Viinamägi (orelil Paul Pressnikoff), Pärnu Issandamuutmise kiriku pidustustest 10. juulil, Tallinna Konservatooriumi viiuli- ja oreli eriala õpilased esinesid Keila kirikus, 17. juulil laulis Helme kiriku koor Karl Tuvikese juhatusel Rõuges, 28. aug. laulsid Jõhvi Mihkli kirikus bariton Jaan Thomson (orelil Paul Pressnikoff), 3. aug. avati Tallinna Kaarli koguduse vanal kalmistul (Siselinna kalmistu) Peeter Süda mälestusbüst (autor kunstnik Ferdi Sannamees), kus laulis rahvaülikooli segakoor Tuudur Vettiku juhatusel, 19. aug. lõppesid 25. juulil alanud kooliõpetajate ja koorijuhtide laulu ja muusika suvekursused Tallinnas (kursuste juhendaja Viktor Krull), 18.-19. aug. oli Rakveres köster-organistide ühingu koosolek, Tallinna Jaani koguduse laulukoor Enn Võrgu juhatusel alustas Händeli oratooriumi "Messias"õppimist, Tallinna Kaarli lauluselts valmistus vaimulikuks kontserdiks Johannes Jürgensoni koorilauludest, Artur Kapp töötas oma oratooriumiga "Hiiob"

  5. Wyniki ekonomiczne klubów sportowych o statusie pożytku publicznego w Polsce = Economic performance of sports clubs charitable status in Poland

    Directory of Open Access Journals (Sweden)

    Artur Wyszyński

    2015-11-01

    Abstract The main aim of this article is to assess the financial condition and results of Polish football clubs who have the status of public benefit organizations (OPP. The analysis was conducted for clubs that were played matches in the 2013/2014 season in the men's football tournament at all levels except the highest such competitions. Ekstraklasa (no clubs having the status OPP for levels I, II, III, IV league and class district, A , B and C. All the clubs analyzed as a function of the association. The analysis shows that clubs are in a bad financial situation. Most clubs, regardless of the grade level in which the matches were played were characterized by a low value of wealth. Average debt was close to 100%. As a result, nearly one-third of the clubs showed a negative equity value. About half of the clubs observed a negative value total return on assets and return on sales. In the structure of revenues are the primary source of public funds. Other sources of income included clubs, private funds, other and income from the 1% tax on individuals.   Key words: club sports, financial analysis, income football clubs [1] e-mail artur.wyszynski@uwm.edu.pl

  6. The WRKY transcription factor family in Brachypodium distachyon.

    Science.gov (United States)

    Tripathi, Prateek; Rabara, Roel C; Langum, Tanner J; Boken, Ashley K; Rushton, Deena L; Boomsma, Darius D; Rinerson, Charles I; Rabara, Jennifer; Reese, R Neil; Chen, Xianfeng; Rohila, Jai S; Rushton, Paul J

    2012-06-22

    A complete assembled genome sequence of wheat is not yet available. Therefore, model plant systems for wheat are very valuable. Brachypodium distachyon (Brachypodium) is such a system. The WRKY family of transcription factors is one of the most important families of plant transcriptional regulators with members regulating important agronomic traits. Studies of WRKY transcription factors in Brachypodium and wheat therefore promise to lead to new strategies for wheat improvement. We have identified and manually curated the WRKY transcription factor family from Brachypodium using a pipeline designed to identify all potential WRKY genes. 86 WRKY transcription factors were found, a total higher than all other current databases. We therefore propose that our numbering system (BdWRKY1-BdWRKY86) becomes the standard nomenclature. In the JGI v1.0 assembly of Brachypodium with the MIPS/JGI v1.0 annotation, nine of the transcription factors have no gene model and eleven gene models are probably incorrectly predicted. In total, twenty WRKY transcription factors (23.3%) do not appear to have accurate gene models. To facilitate use of our data, we have produced The Database of Brachypodium distachyon WRKY Transcription Factors. Each WRKY transcription factor has a gene page that includes predicted protein domains from MEME analyses. These conserved protein domains reflect possible input and output domains in signaling. The database also contains a BLAST search function where a large dataset of WRKY transcription factors, published genes, and an extensive set of wheat ESTs can be searched. We also produced a phylogram containing the WRKY transcription factor families from Brachypodium, rice, Arabidopsis, soybean, and Physcomitrella patens, together with published WRKY transcription factors from wheat. This phylogenetic tree provides evidence for orthologues, co-orthologues, and paralogues of Brachypodium WRKY transcription factors. The description of the WRKY transcription factor

  7. Final technical report for: Insertional Mutagenesis of Brachypodium distachyon DE-AI02-07ER64452

    Energy Technology Data Exchange (ETDEWEB)

    John, Vogel P. [DOE Joint Genome Institute, Walnut Creek, CA (United States)

    2015-10-29

    Several bioenergy grasses are poised to become a major source of energy in the United States. Despite their increasing importance, we know little about the basic biology underlying the traits that control the utility of grasses as energy crops. Better knowledge of grass biology (e.g. identification of the genes that control cell wall composition, plant architecture, cell size, cell division, reproduction, nutrient uptake, carbon flux, etc.) could be used to design rational strategies for crop improvement and shorten the time required to domesticate these species. The use of an appropriate model system is an efficient way to gain this knowledge. Brachypodium distachyon is a small annual grass with all the attributes needed to be a modern model organism including simple growth requirements, fast generation time, small stature, small genome size and self-fertility. These attributes led to the recommendation in the DOE’s “Breaking the Biological Barriers to Cellulosic Ethanol: A Joint Research Agenda” report to propose developing and using B. distachyon as a model for energy crops to accelerate their domestication. Strategic investments (e.g. genome sequencing) in B. distachyon by the DOE are now bearing fruit and B. distachyon is being used as a model grass by hundreds of laboratories worldwide. Sequence indexed insertional mutants are an extremely powerful tool for both forward and reverse genetics. They allow researchers to order mutants in any gene tagged in the collection by simply emailing a request. The goal of this project was to create a collection of sequence indexed insertional mutants (T-DNA lines) for the model grass Brachypodium distachyon in order to facilitate research by the scientific community. During the course of this grant we created a collection of 23,649 B. distachyon T-DNA lines and identified 26,112 unique insertion sites. The collection can be queried through the project website (http://jgi.doe.gov/our-science

  8. Curation and Computational Design of Bioenergy-Related Metabolic Pathways

    Energy Technology Data Exchange (ETDEWEB)

    Karp, Peter D. [SRI International, Menlo Park, CA (United States)

    2014-09-12

    Pathway Tools is a systems-biology software package written by SRI International (SRI) that produces Pathway/Genome Databases (PGDBs) for organisms with a sequenced genome. Pathway Tools also provides a wide range of capabilities for analyzing predicted metabolic networks and user-generated omics data. More than 5,000 academic, industrial, and government groups have licensed Pathway Tools. This user community includes researchers at all three DOE bioenergy centers, as well as academic and industrial metabolic engineering (ME) groups. An integral part of the Pathway Tools software is MetaCyc, a large, multiorganism database of metabolic pathways and enzymes that SRI and its academic collaborators manually curate. This project included two main goals: I. Enhance the MetaCyc content of bioenergy-related enzymes and pathways. II. Develop computational tools for engineering metabolic pathways that satisfy specified design goals, in particular for bioenergy-related pathways. In part I, SRI proposed to significantly expand the coverage of bioenergy-related metabolic information in MetaCyc, followed by the generation of organism-specific PGDBs for all energy-relevant organisms sequenced at the DOE Joint Genome Institute (JGI). Part I objectives included: 1: Expand the content of MetaCyc to include bioenergy-related enzymes and pathways. 2: Enhance the Pathway Tools software to enable display of complex polymer degradation processes. 3: Create new PGDBs for the energy-related organisms sequenced by JGI, update existing PGDBs with new MetaCyc content, and make these data available to JBEI via the BioCyc website. In part II, SRI proposed to develop an efficient computational tool for the engineering of metabolic pathways. Part II objectives included: 4: Develop computational tools for generating metabolic pathways that satisfy specified design goals, enabling users to specify parameters such as starting and ending compounds, and preferred or disallowed intermediate compounds

  9. Memoria y retorno del exilio republicano catalán (Memory and Return of the Catalan Republican Exile

    Directory of Open Access Journals (Sweden)

    Roser Pujadas Comas d'Argemir

    2004-01-01

    Full Text Available The end of the Spanish Civil War in 1939 meant that many republicans went into exile fleeing Francoism. In the case of intellectuals and writers from Catalunia, exile constituted the only means of ensuring the continuity of their culture, given the cultural and linguistic repression by the dictatorship. Much later than they had expected, some were able to return but, after so many years, return meant yet another rupture; it meant returning to a country no longer the one so often remembered and yearned for. Such events, as is often the case in turbulent historical periods, generated a need to bear witness to the individual and collective experiences, which in literary terms translated into a considerable volume of testimonial works – which continue to be published – by those who suffered this war and exile. As we shall see, memory becomes a kind of con-suelo – comfort - countering the ruptures with a sense of coherence and continuity. For one who has had to leave their country, the land of their birth becomes part of the past, so that in such cases to make present what is far, to remember, involves not only temporal but also spatial issues. When the exile (if such a thing is possible returns, time inexorably has passed. But what happens with the space re-encountered? In the case of two testimonial texts written by two republicans on their return from exile in Mexico – Al cap de 26 anys (1972 by Avel-lí Artís-Gener and Viatge a l’esperanca (1973, by Artur Bladé Desumvila – we propose to analyse the pattern woven between memory, homeland and return by the experience of exile. We shall see how the return, intended to contrast the idealised country with that in which the exile finds him/herself again, gives rise to a series of reflections about homeland and memory as the foundations of the exile’s identity.

  10. I have called you by your number. 172364, 119198, 132434 and others

    Directory of Open Access Journals (Sweden)

    Joanna Roszak

    2012-01-01

    Full Text Available The title “I have called you by your number” is paraphrased from the book of Isaiah. In Torah the change of name of the main character suggests the turning point of his/her fate. In the article I concentrate on the gesture of assuming pseudonym-anagrams by a few poets – it is viable to read it as an attempt at self-determination, and as a painful dividing line, and as a form of a mask, and an analogue of a perturbed fate. My reflection concentrates on texts by Sachs, Domin, Celan, Amichai, Améry with a motif of numbers (the turned over analogues of the names – I find a context in the poem by Wisława Szymborska Still; and in the performance by Raimund Hoghe, staged only once, just in Poland, entitled site specific; the project 80064 by Artur Żmijewski or works by Roman Opałka. The promise written in the Book of Isaiah of liberating Israel, which was supposed to be a work of God’s omnipotence, God talking to Jacob – who is an allegory of Israel: “Don’t be afraid, for I have redeemed you; I have called you by your name, you are mine. When you pass through the waters, I will be with you; and through the rivers, they shall not overflow you: when you walk through the fire, you shall not be burned, neither shall the flame kindle on you. For I am Yahweh your God”, in Auschwitz turned into the antithesis, and hence a threat that has a completely different sender than a good father: Be afraid, or else nobody will redeem you. I am calling you by the number, you are no one’s. You will go to the fire and a flame will consume you. You are alone.

  11. Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger.

    Science.gov (United States)

    Wright, James C; Sugden, Deana; Francis-McIntyre, Sue; Riba-Garcia, Isabel; Gaskell, Simon J; Grigoriev, Igor V; Baker, Scott E; Beynon, Robert J; Hubbard, Simon J

    2009-02-04

    Proteomic data is a potentially rich, but arguably unexploited, data source for genome annotation. Peptide identifications from tandem mass spectrometry provide prima facie evidence for gene predictions and can discriminate over a set of candidate gene models. Here we apply this to the recently sequenced Aspergillus niger fungal genome from the Joint Genome Institutes (JGI) and another predicted protein set from another A.niger sequence. Tandem mass spectra (MS/MS) were acquired from 1d gel electrophoresis bands and searched against all available gene models using Average Peptide Scoring (APS) and reverse database searching to produce confident identifications at an acceptable false discovery rate (FDR). 405 identified peptide sequences were mapped to 214 different A.niger genomic loci to which 4093 predicted gene models clustered, 2872 of which contained the mapped peptides. Interestingly, 13 (6%) of these loci either had no preferred predicted gene model or the genome annotators' chosen "best" model for that genomic locus was not found to be the most parsimonious match to the identified peptides. The peptides identified also boosted confidence in predicted gene structures spanning 54 introns from different gene models. This work highlights the potential of integrating experimental proteomics data into genomic annotation pipelines much as expressed sequence tag (EST) data has been. A comparison of the published genome from another strain of A.niger sequenced by DSM showed that a number of the gene models or proteins with proteomics evidence did not occur in both genomes, further highlighting the utility of the method.

  12. IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses.

    Science.gov (United States)

    Paez-Espino, David; Chen, I-Min A; Palaniappan, Krishna; Ratner, Anna; Chu, Ken; Szeto, Ernest; Pillay, Manoj; Huang, Jinghua; Markowitz, Victor M; Nielsen, Torben; Huntemann, Marcel; K Reddy, T B; Pavlopoulos, Georgios A; Sullivan, Matthew B; Campbell, Barbara J; Chen, Feng; McMahon, Katherine; Hallam, Steve J; Denef, Vincent; Cavicchioli, Ricardo; Caffrey, Sean M; Streit, Wolfgang R; Webster, John; Handley, Kim M; Salekdeh, Ghasem H; Tsesmetzis, Nicolas; Setubal, Joao C; Pope, Phillip B; Liu, Wen-Tso; Rivers, Adam R; Ivanova, Natalia N; Kyrpides, Nikos C

    2017-01-04

    Viruses represent the most abundant life forms on the planet. Recent experimental and computational improvements have led to a dramatic increase in the number of viral genome sequences identified primarily from metagenomic samples. As a result of the expanding catalog of metagenomic viral sequences, there exists a need for a comprehensive computational platform integrating all these sequences with associated metadata and analytical tools. Here we present IMG/VR (https://img.jgi.doe.gov/vr/), the largest publicly available database of 3908 isolate reference DNA viruses with 264 413 computationally identified viral contigs from >6000 ecologically diverse metagenomic samples. Approximately half of the viral contigs are grouped into genetically distinct quasi-species clusters. Microbial hosts are predicted for 20 000 viral sequences, revealing nine microbial phyla previously unreported to be infected by viruses. Viral sequences can be queried using a variety of associated metadata, including habitat type and geographic location of the samples, or taxonomic classification according to hallmark viral genes. IMG/VR has a user-friendly interface that allows users to interrogate all integrated data and interact by comparing with external sequences, thus serving as an essential resource in the viral genomics community. © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

  13. Complete mitochondrial genome sequence of the polychaete annelidPlatynereis dumerilii

    Energy Technology Data Exchange (ETDEWEB)

    Boore, Jeffrey L.

    2004-08-15

    Complete mitochondrial genome sequences are now available for 126 metazoans (see Boore 1999; Mitochondrial Genomics link at http://www.jgi.doe.gov), but the taxonomic representation is highly biased. For example, 80 are from a single phylum, Chordata, and show little variation for many molecular features. Arthropoda is represented by 16 taxa, Mollusca by eight, and Echinodermata by five, with only 17 others from the remaining {approx}30 metazoan phyla. With few exceptions (see Wolstenholme 1992 and Boore 1999) these are circular DNA molecules, about 16 kb in size, and encode the same set of 37 genes. A variety of non-standard names are sometimes used for animal mitochondrial genes; see Boore (1999) for gene nomenclature and a table of synonyms. Mitochondrial genome comparisons serve as a model of genome evolution. In this system, much smaller and simpler than that of the nucleus, are all of the same factors of genome evolution, where one may find tractable the changes in tRNA structure, base composition, genetic code, gene arrangement, etc. Further, patterns of mitochondrial gene rearrangements are an exceptionally reliable indicator of phylogenetic relationships (Smith et al.1993; Boore et al. 1995; Boore, Lavrov, and Brown 1998; Boore and Brown 1998, 2000; Dowton 1999; Stechmann and Schlegel 1999; Kurabayashi and Ueshima 2000). To these ends, we are sampling further the variation among major animal groups in features of their mitochondrial genomes.

  14. Uranium Biomineralization by Natural Microbial Phosphatase Activities in the Subsurface

    Energy Technology Data Exchange (ETDEWEB)

    Sobecky, Patricia A. [Univ. of Alabama, Tuscaloosa, AL (United States)

    2015-04-06

    In this project, inter-disciplinary research activities were conducted in collaboration among investigators at The University of Alabama (UA), Georgia Institute of Technology (GT), Lawrence Berkeley National Laboratory (LBNL), Brookhaven National Laboratory (BNL), the DOE Joint Genome Institute (JGI), and the Stanford Synchrotron Radiation Light source (SSRL) to: (i) confirm that phosphatase activities of subsurface bacteria in Area 2 and 3 from the Oak Ridge Field Research Center result in solid U-phosphate precipitation in aerobic and anaerobic conditions; (ii) investigate the eventual competition between uranium biomineralization via U-phosphate precipitation and uranium bioreduction; (iii) determine subsurface microbial community structure changes of Area 2 soils following organophosphate amendments; (iv) obtain the complete genome sequences of the Rahnella sp. Y9-602 and the type-strain Rahnella aquatilis ATCC 33071 isolated from these soils; (v) determine if polyphosphate accumulation and phytate hydrolysis can be used to promote U(VI) biomineralization in subsurface sediments; (vi) characterize the effect of uranium on phytate hydrolysis by a new microorganism isolated from uranium-contaminated sediments; (vii) utilize positron-emission tomography to label and track metabolically-active bacteria in soil columns, and (viii) study the stability of the uranium phosphate mineral product. Microarray analyses and mineral precipitation characterizations were conducted in collaboration with DOE SBR-funded investigators at LBNL. Thus, microbial phosphorus metabolism has been shown to have a contributing role to uranium immobilization in the subsurface.

  15. Comparative Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens

    Energy Technology Data Exchange (ETDEWEB)

    Condon, Bradford J.; Leng, Yueqiang; Wu, Dongliang; Bushley, Kathryn E.; Ohm, Robin A.; Otillar, Robert; Martin, Joel; Schackwitz, Wendy; Grimwood, Jane; MohdZainudin, NurAinlzzati; Xue, Chunsheng; Wang, Rui; Manning, Viola A.; Dhillon, Braham; Tu, Zheng Jin; Steffenson, Brian J.; Salamov, Asaf; Sun, Hui; Lowry, Steve; LaButti, Kurt; Han, James; Copeland, Alex; Lindquist, Erika; Barry, Kerrie; Schmutz, Jeremy; Baker, Scott E.; Ciuffetti, Lynda M.; Grigoriev, Igor V.; Zhong, Shaobin; Turgeon, B. Gillian

    2013-01-24

    The genomes of five Cochliobolus heterostrophus strains, two Cochliobolus sativus strains, three additional Cochliobolus species (Cochliobolus victoriae, Cochliobolus carbonum, Cochliobolus miyabeanus), and closely related Setosphaeria turcica were sequenced at the Joint Genome Institute (JGI). The datasets were used to identify SNPs between strains and species, unique genomic regions, core secondary metabolism genes, and small secreted protein (SSP) candidate effector encoding genes with a view towards pinpointing structural elements and gene content associated with specificity of these closely related fungi to different cereal hosts. Whole-genome alignment shows that three to five of each genome differs between strains of the same species, while a quarter of each genome differs between species. On average, SNP counts among field isolates of the same C. heterostrophus species are more than 25 higher than those between inbred lines and 50 lower than SNPs between Cochliobolus species. The suites of nonribosomal peptide synthetase (NRPS), polyketide synthase (PKS), and SSP encoding genes are astoundingly diverse among species but remarkably conserved among isolates of the same species, whether inbred or field strains, except for defining examples that map to unique genomic regions. Functional analysis of several strain-unique PKSs and NRPSs reveal a strong correlation with a role in virulence.

  16. IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes.

    Science.gov (United States)

    Hadjithomas, Michalis; Chen, I-Min A; Chu, Ken; Huang, Jinghua; Ratner, Anna; Palaniappan, Krishna; Andersen, Evan; Markowitz, Victor; Kyrpides, Nikos C; Ivanova, Natalia N

    2017-01-04

    Secondary metabolites produced by microbes have diverse biological functions, which makes them a great potential source of biotechnologically relevant compounds with antimicrobial, anti-cancer and other activities. The proteins needed to synthesize these natural products are often encoded by clusters of co-located genes called biosynthetic gene clusters (BCs). In order to advance the exploration of microbial secondary metabolism, we developed the largest publically available database of experimentally verified and predicted BCs, the Integrated Microbial Genomes Atlas of Biosynthetic gene Clusters (IMG-ABC) (https://img.jgi.doe.gov/abc/). Here, we describe an update of IMG-ABC, which includes ClusterScout, a tool for targeted identification of custom biosynthetic gene clusters across 40 000 isolate microbial genomes, and a new search capability to query more than 700 000 BCs from isolate genomes for clusters with similar Pfam composition. Additional features enable fast exploration and analysis of BCs through two new interactive visualization features, a BC function heatmap and a BC similarity network graph. These new tools and features add to the value of IMG-ABC's vast body of BC data, facilitating their in-depth analysis and accelerating secondary metabolite discovery. © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

  17. Sorbitol dehydrogenase of Aspergillus niger, SdhA, is part of the oxido-reductive D-galactose pathway and essential for D-sorbitol catabolism.

    Science.gov (United States)

    Koivistoinen, Outi M; Richard, Peter; Penttilä, Merja; Ruohonen, Laura; Mojzita, Dominik

    2012-02-17

    In filamentous fungi D-galactose can be catabolised through the oxido-reductive and/or the Leloir pathway. In the oxido-reductive pathway D-galactose is converted to d-fructose in a series of steps where the last step is the oxidation of d-sorbitol by an NAD-dependent dehydrogenase. We identified a sorbitol dehydrogenase gene, sdhA (JGI53356), in Aspergillus niger encoding a medium chain dehydrogenase which is involved in D-galactose and D-sorbitol catabolism. The gene is upregulated in the presence of D-galactose, galactitol and D-sorbitol. An sdhA deletion strain showed reduced growth on galactitol and growth on D-sorbitol was completely abolished. The purified enzyme converted D-sorbitol to D-fructose with K(m) of 50±5 mM and v(max) of 80±10 U/mg. Copyright © 2012 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.

  18. ChlamyCyc: an integrative systems biology database and web-portal for Chlamydomonas reinhardtii

    Directory of Open Access Journals (Sweden)

    Kempa Stefan

    2009-05-01

    Full Text Available Abstract Background The unicellular green alga Chlamydomonas reinhardtii is an important eukaryotic model organism for the study of photosynthesis and plant growth. In the era of modern high-throughput technologies there is an imperative need to integrate large-scale data sets from high-throughput experimental techniques using computational methods and database resources to provide comprehensive information about the molecular and cellular organization of a single organism. Results In the framework of the German Systems Biology initiative GoFORSYS, a pathway database and web-portal for Chlamydomonas (ChlamyCyc was established, which currently features about 250 metabolic pathways with associated genes, enzymes, and compound information. ChlamyCyc was assembled using an integrative approach combining the recently published genome sequence, bioinformatics methods, and experimental data from metabolomics and proteomics experiments. We analyzed and integrated a combination of primary and secondary database resources, such as existing genome annotations from JGI, EST collections, orthology information, and MapMan classification. Conclusion ChlamyCyc provides a curated and integrated systems biology repository that will enable and assist in systematic studies of fundamental cellular processes in Chlamydomonas. The ChlamyCyc database and web-portal is freely available under http://chlamycyc.mpimp-golm.mpg.de.

  19. ChlamyCyc: an integrative systems biology database and web-portal for Chlamydomonas reinhardtii.

    Science.gov (United States)

    May, Patrick; Christian, Jan-Ole; Kempa, Stefan; Walther, Dirk

    2009-05-04

    The unicellular green alga Chlamydomonas reinhardtii is an important eukaryotic model organism for the study of photosynthesis and plant growth. In the era of modern high-throughput technologies there is an imperative need to integrate large-scale data sets from high-throughput experimental techniques using computational methods and database resources to provide comprehensive information about the molecular and cellular organization of a single organism. In the framework of the German Systems Biology initiative GoFORSYS, a pathway database and web-portal for Chlamydomonas (ChlamyCyc) was established, which currently features about 250 metabolic pathways with associated genes, enzymes, and compound information. ChlamyCyc was assembled using an integrative approach combining the recently published genome sequence, bioinformatics methods, and experimental data from metabolomics and proteomics experiments. We analyzed and integrated a combination of primary and secondary database resources, such as existing genome annotations from JGI, EST collections, orthology information, and MapMan classification. ChlamyCyc provides a curated and integrated systems biology repository that will enable and assist in systematic studies of fundamental cellular processes in Chlamydomonas. The ChlamyCyc database and web-portal is freely available under http://chlamycyc.mpimp-golm.mpg.de.

  20. FungiDB: An Integrated Bioinformatic Resource for Fungi and Oomycetes

    Directory of Open Access Journals (Sweden)

    Evelina Y. Basenko

    2018-03-01

    Full Text Available FungiDB (fungidb.org is a free online resource for data mining and functional genomics analysis for fungal and oomycete species. FungiDB is part of the Eukaryotic Pathogen Genomics Database Resource (EuPathDB, eupathdb.org platform that integrates genomic, transcriptomic, proteomic, and phenotypic datasets, and other types of data for pathogenic and nonpathogenic, free-living and parasitic organisms. FungiDB is one of the largest EuPathDB databases containing nearly 100 genomes obtained from GenBank, Aspergillus Genome Database (AspGD, The Broad Institute, Joint Genome Institute (JGI, Ensembl, and other sources. FungiDB offers a user-friendly web interface with embedded bioinformatics tools that support custom in silico experiments that leverage FungiDB-integrated data. In addition, a Galaxy-based workspace enables users to generate custom pipelines for large-scale data analysis (e.g., RNA-Seq, variant calling, etc.. This review provides an introduction to the FungiDB resources and focuses on available features, tools, and queries and how they can be used to mine data across a diverse range of integrated FungiDB datasets and records.

  1. Streamlining the Design-to-Build Transition with Build-Optimization Software Tools.

    Science.gov (United States)

    Oberortner, Ernst; Cheng, Jan-Fang; Hillson, Nathan J; Deutsch, Samuel

    2017-03-17

    Scaling-up capabilities for the design, build, and test of synthetic biology constructs holds great promise for the development of new applications in fuels, chemical production, or cellular-behavior engineering. Construct design is an essential component in this process; however, not every designed DNA sequence can be readily manufactured, even using state-of-the-art DNA synthesis methods. Current biological computer-aided design and manufacture tools (bioCAD/CAM) do not adequately consider the limitations of DNA synthesis technologies when generating their outputs. Designed sequences that violate DNA synthesis constraints may require substantial sequence redesign or lead to price-premiums and temporal delays, which adversely impact the efficiency of the DNA manufacturing process. We have developed a suite of build-optimization software tools (BOOST) to streamline the design-build transition in synthetic biology engineering workflows. BOOST incorporates knowledge of DNA synthesis success determinants into the design process to output ready-to-build sequences, preempting the need for sequence redesign. The BOOST web application is available at https://boost.jgi.doe.gov and its Application Program Interfaces (API) enable integration into automated, customized DNA design processes. The herein presented results highlight the effectiveness of BOOST in reducing DNA synthesis costs and timelines.

  2. Comparative biochemistry and physiology of iron-respiring bacteria from acidic and neutral-pH environments: Final Technical Report

    Energy Technology Data Exchange (ETDEWEB)

    Magnuson, T S

    2009-04-07

    Acidophilic dissimilatory iron-reducing bacteria (DIRB) are now being detected in a variety of ‘extreme’ low-pH, radionuclide- and heavy-metal contaminated habitats where Fe(III) reduction is taking place, and may represent a significant proportion of metal-transforming organisms in these environments. Acidiphilium cryptum is our model organism, a facultative iron-respiring Alphaproteobacterium. Major findings of this project have been 1) Discovery of novel outer-membrane and periplasmic cytochromes c in acidophiles that are reactive with Fe and Cr, 2) Discovery of Cr(VI) reduction mechanisms in acidophiles, mediated by c-type cytochromes and other reductase activity, 3) Development of enzyme detection methods specific for Cr-reducing enzymes, 4) Characterization of biofilm formation in A. cryptum, and 5) Annotation of the Acidiphilium cryptum genome (Magnuson, Kusel, and Cummings, DOE-JGI 2005-2006). Two manuscripts and one book chapter have been published, and several more mauscripts are prepared for submission.

  3. A Universal Genome Array and Transcriptome Atlas for Brachypodium Distachyon

    Energy Technology Data Exchange (ETDEWEB)

    Mockler, Todd [Oregon State Univ., Corvallis, OR (United States)

    2017-04-17

    Brachypodium distachyon is the premier experimental model grass platform and is related to candidate feedstock crops for bioethanol production. Based on the DOE-JGI Brachypodium Bd21 genome sequence and annotation we designed a whole genome DNA microarray platform. The quality of this array platform is unprecedented due to the exceptional quality of the Brachypodium genome assembly and annotation and the stringent probe selection criteria employed in the design. We worked with members of the international community and the bioinformatics/design team at Affymetrix at all stages in the development of the array. We used the Brachypodium arrays to interrogate the transcriptomes of plants grown in a variety of environmental conditions including diurnal and circadian light/temperature conditions and under a variety of environmental conditions. We examined the transciptional responses of Brachypodium seedlings subjected to various abiotic stresses including heat, cold, salt, and high intensity light. We generated a gene expression atlas representing various organs and developmental stages. The results of these efforts including all microarray datasets are published and available at online public databases.

  4. Uranium Biomineralization by Natural Microbial Phosphatase Activities in the Subsurface

    International Nuclear Information System (INIS)

    Sobecky, Patricia A.

    2015-01-01

    In this project, inter-disciplinary research activities were conducted in collaboration among investigators at The University of Alabama (UA), Georgia Institute of Technology (GT), Lawrence Berkeley National Laboratory (LBNL), Brookhaven National Laboratory (BNL), the DOE Joint Genome Institute (JGI), and the Stanford Synchrotron Radiation Light source (SSRL) to: (i) confirm that phosphatase activities of subsurface bacteria in Area 2 and 3 from the Oak Ridge Field Research Center result in solid U-phosphate precipitation in aerobic and anaerobic conditions; (ii) investigate the eventual competition between uranium biomineralization via U-phosphate precipitation and uranium bioreduction; (iii) determine subsurface microbial community structure changes of Area 2 soils following organophosphate amendments; (iv) obtain the complete genome sequences of the Rahnella sp. Y9-602 and the type-strain Rahnella aquatilis ATCC 33071 isolated from these soils; (v) determine if polyphosphate accumulation and phytate hydrolysis can be used to promote U(VI) biomineralization in subsurface sediments; (vi) characterize the effect of uranium on phytate hydrolysis by a new microorganism isolated from uranium-contaminated sediments; (vii) utilize positron-emission tomography to label and track metabolically-active bacteria in soil columns, and (viii) study the stability of the uranium phosphate mineral product. Microarray analyses and mineral precipitation characterizations were conducted in collaboration with DOE SBR-funded investigators at LBNL. Thus, microbial phosphorus metabolism has been shown to have a contributing role to uranium immobilization in the subsurface.

  5. Acidovorax citrulli: generating basic and applied knowledge to tackle a global threat to the cucurbit industry.

    Science.gov (United States)

    Burdman, Saul; Walcott, Ron

    2012-10-01

    , irregular, water-soaked lesions which later extend through the rind, turn brown and crack. On melon fruits, symptoms are characterized by small, often sunken rind lesions and internal fruit decay. Symptoms on the leaves of mature plants are difficult to diagnose because they are often inconspicuous or similar to those caused by other biotic or abiotic stresses. When they occur, leaf lesions can spread along the midrib and main veins. Lesions appear dark-brown to black on watermelon and light to reddish-brown on melon. Bacterial fruit blotch of cucurbits at APSnet, http://www.apsnet.org/edcenter/intropp/lessons/prokaryotes/Pages/BacterialBlotch.aspx; bacterial fruit blotch guide from ASTA, http://www.amseed.com/pdfs/DiseaseGuide-BFB-English.pdf; Acidovorax citrulli AAC00-1 genome at JGI, http://genome.jgi-psf.org/aciav/aciav.info.html. © 2012 THE AUTHORS. MOLECULAR PLANT PATHOLOGY © 2012 BSPP AND BLACKWELL PUBLISHING LTD.

  6. BER Science Network Requirements Workshop -- July 26-27,2007

    Energy Technology Data Exchange (ETDEWEB)

    Tierney, Brian L.; Dart, Eli

    2008-02-01

    The Energy Sciences Network (ESnet) is the primary provider of network connectivity for the US Department of Energy Office of Science, the single largest supporter of basic research in the physical sciences in the United States of America. In support of the Office of Science programs, ESnet regularly updates and refreshes its understanding of the networking requirements of the instruments, facilities, scientists, and science programs that it serves. This focus has helped ESnet to be a highly successful enabler of scientific discovery for over 20 years. In July 2007, ESnet and the Biological and Environmental Research (BER) Program Office of the DOE Office of Science organized a workshop to characterize the networking requirements of the science programs funded by the BER Program Office. These included several large programs and facilities, including Atmospheric Radiation Measurement (ARM) Program and the ARM Climate Research Facility (ACRF), Bioinformatics and Life Sciences Programs, Climate Sciences Programs, the Environmental Molecular Sciences Laboratory at PNNL, the Joint Genome Institute (JGI). National Center for Atmospheric Research (NCAR) also participated in the workshop and contributed a section to this report due to the fact that a large distributed data repository for climate data will be established at NERSC, ORNL and NCAR, and this will have an effect on ESnet. Workshop participants were asked to codify their requirements in a 'case study' format, which summarizes the instruments and facilities necessary for the science and the process by which the science is done, with emphasis on the network services needed and the way in which the network is used. Participants were asked to consider three time scales in their case studies--the near term (immediately and up to 12 months in the future), the medium term (3-5 years in the future), and the long term (greater than 5 years in the future). In addition to achieving its goal of collecting and

  7. Analgesic efficacy and safety of epidural oxycodone in patients undergoing total hip arthroplasty: a pilot study

    Directory of Open Access Journals (Sweden)

    Olczak B

    2017-09-01

    Full Text Available Bogumił Olczak,1 Grzegorz Kowalski,1,2 Wojciech Leppert,2 Agnieszka Bienert,3 Artur Teżyk,4 Michał Adamski,1 Stanisław Rzymski,1 Katarzyna Wieczorowska-Tobis2 1Department of Anaesthesiology, Józef Struś Multiprofile Municipal Hospital, Poznań, 2Department of Palliative Medicine, 3Department of Clinical Pharmacy and Biopharmacy, 4Department of Forensic Medicine, Poznan University of Medical Sciences, Poznań, Poland Background and objectives: Oxycodone is poorly studied as an adjuvant to central blockades. The aim of this pilot study was to assess the efficacy and safety of oxycodone hydrochloride in epidural blockade among patients undergoing total hip arthroplasty (THA.Patients and methods: In 11 patients (American Society of Anesthesiologists physical status classification system II/III, age range: 59–82 years, THA was conducted with an epidural blockade using 15 mL 0.25% bupivacaine (37.5 mg with 5 mg oxycodone hydrochloride and sedation with propofol infusion at a dose of 3–5 mg/kg/h. After the surgery, patients received ketoprofen at a dose of 100 mg twice daily. In the first 24 hours postoperative period, pain was assessed by numerical rating scale at rest and on movement; adverse effects (AEs were recorded; and plasma concentrations of oxycodone, noroxycodone, and bupivacaine were measured.Results: The administration of epidural oxycodone at a dose of 5 mg in patients undergoing THA provided analgesia for a mean time of 10.3±4.89 h. In one patient, mild pruritus was observed. Oxycodone did not evoke other AEs. Plasma concentrations of oxycodone while preserving analgesia were >2.9 ng/mL. Noroxycodone concentrations in plasma did not guarantee analgesic effect.Conclusion: The administration of epidural oxycodone at a dose of 5 mg prolongs the analgesia period to ~10 hours in patients after THA. Oxycodone may evoke pruritus. A 5 mg dose of oxycodone hydrochloride used in an epidural blockade seems to be a safe drug in patients

  8. Public health policy and the building up of a Brazilian medical identity.

    Science.gov (United States)

    de Castro-Santos, L A

    2005-12-01

    Since George Herbert Mead studied "the social self" and the interactionists went further in distinguishing "images of self", a lecture on the building up of a Brazilian medical identity should try to focus on the patterns of self-images, presented images, and aspired-to images among the Brazilian medical elites during the First Republic (1889-1930). In no other period of Brazilian history were those "images" of professional identity so close--in contrast, later periods of Brazilian history witnessed an almost permanent "collision" or the clashing of such images among public health specialists. Oswaldo Cruz, Carlos Chagas, Artur Neiva and Belisário Pena are perhaps the best examples of successful careers as "sanitarians" (to recall John Duffy's historical work on luminaries before and after the "New Public Health" in the United States), and as important political actors during Brazil's First Republic. In light of the prominent political, policy-oriented, and scientific roles public health professionals played in Brazil, it is interesting to suggest that in large part such prominence resulted from the symbolic impact of the ideologies of sanitary reform on the political agenda of that period of Brazilian history. Where many studies look for personal rivalries and disputes around Chagas and Neiva as public figures, we may also see the importance of finding identity-building processes among public health specialists as an integrated group (e.g., trying to appear as "significant others" for the new generations of medical graduates in the country), regardless of existing rivalries. Cruz and Chagas, especially, were names with great impact in the Brazilian press (pro and con), a circumstance made possible largely by their easy and direct access to the Brazilian presidents Rodrigues Alves and Epitácio Pessoa, and, most clearly, by public health being one of Brazil's political priorities to find a place among the "civilized nations" of the world. A task that further

  9. International Round Table “Tatar Materials in Polish Archives” (Warsaw, 31st March – 1st April, 2016

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    M.M. Gibatdinov

    2016-12-01

    Full Text Available This article present a short report on the International round table “Tatar materials in Polish archives” organized in Warsaw on March 31 – April 1, 2016. Round table was a result of international scientific cooperation between Marjani Institute of History, Polish Academy of Sciences, University of Warsaw, Institute for Caucasian-, Tatar- and Turkestan Studies (ICATAT. It was a part of the long-term research project “Tatar Materials in Foreign Archives” carried out by the Marjani Institute of History in the framework of State Program of the Republic of Tatarstan “Preserving of Tatar Ethnical Identity (for years 2014–2016.” The following papers was presented on the round table: “On results of recent researches of Tatar materials in Polish archives” by Prof., Dr. Dariusz Kołodziejczyk, Director of the Institute of History, University of Warsaw; “The New Records of Old Heritage – Documents about Tatars from Regional and Private Archives in Polish-German Context”, by Dr. Mieste Hottop-Riecke, Director of ICATAT and Dr. Stephan Theilig, Director of Brandenburg-Preußen Museum Wustrau; “Maniere de Faire la Guerre des Tartares’ as Hybrid War in the Military Art of Crimean and Dobruja Tatars in the Early modern Time”, by Dr. Andrzej Gliwa, University of Warsaw, Department of History, Faculty Member; “Tatar Documents in Archives and Museums in Bialystok” by Dr. Artur Konopacki, Assistant Professor in Faculty of Pedagogy and Psychology, University of Bialystok; ”The first results of international research project ”Yazma Miras – Written Heritage” by Marat Gibatdinov. Participants of round table discussed a possible prospects for future cooperation in the field of researching and digitalizing of Tatar materials from Polish archives. During the conference the meetings with the representatives of Tatar community in Poland and Lithuania was organized, as well as the study visits to the Tatar Mosque and Tatar

  10. Influence of cigarette smoking on hormone and lipid metabolism in women in late reproductive stage

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    Szkup M

    2018-01-01

    Full Text Available Małgorzata Szkup,1 Anna Jurczak,2 Beata Karakiewicz,3 Artur Kotwas,3 Jacek Kopeć,4 Elżbieta Grochans1 1Department of Nursing, 2Department of Clinical Nursing, 3Department of Public Health, Pomeranian Medical University in Szczecin, Szczecin, Poland; 4School of Population and Public Health, Faculty of Medicine, The University of British Columbia, Vancouver, BC, Canada Background: The aim of the study was to analyze lipid and hormone metabolism, body mass index (BMI, and age parameters in late reproductive stage women in relation to cigarette smoking.Methods: The study enrolled 345 healthy late reproductive stage women living in Poland; 13.33% were smokers. The first part of the study assessed lipid metabolism (total cholesterol, high-density lipoprotein [HDL], low-density lipoprotein [LDL], and triglycerides and hormone metabolism (estradiol [E2], follicle-stimulating hormone [FSH], and anti-Müllerian hormone [AMH] levels in women in the early phase of the follicular menstrual cycle. The second part of study was carried out using the diagnostic survey method, with a standardized questionnaire (Primary Care Evaluation of Mental Disorders [PRIME-MD] and the authors’ own research tools.Results: The women were aged 42.3±4.5 years (mean ± SD. The BMI (24.8±4.04 kg/m2 did not differ significantly between the groups. The women who smoked cigarettes had a statistically significantly (p<0.05 lower level of HDL as well as higher LDL and triglyceride levels (p<0.05. Differences were also shown in hormone levels: non-smoking participants had statistically significantly higher levels of E2 and FSH (p<0.05. In the group of non-smoking women, age was a predictor exerting a significant positive impact on the levels of total cholesterol, LDL, triglycerides, and AMH (p<0.05. BMI contributed to a decline in HDL and triglyceride levels. In the group of smoking women, age significantly positively influenced the level of E2, and negatively influenced AMH

  11. Incidence and mortality rates in breast, corpus uteri, and ovarian cancers in Poland (1980–2013: an analysis of population-based data in relation to socio-economic changes

    Directory of Open Access Journals (Sweden)

    Banas T

    2016-09-01

    Full Text Available Tomasz Banas,1 Grzegorz Juszczyk,2 Kazimierz Pitynski,1 Dorota Nieweglowska,1 Artur Ludwin,1 Aleksandra Czerw2 1Department of Gynecology and Oncology, Jagiellonian University Medical College, Krakow, 2Faculty of Health Science, Medical University of Warsaw, Warsaw, Poland Objectives: This study aimed to analyze incidence and mortality trends in breast cancer (BC, corpus uteri cancer (CUC, and ovarian cancer (OC in Poland in the context of sociodemographic changes.Materials and methods: Incidence and mortality data (1980–2013 were retrieved from the Polish National Cancer Registry, while socioeconomic data (1960–2013 were obtained from the World Bank. Age-standardized incidence and mortality rates were calculated by direct standardization, and join-point regression was performed to describe trends using the average annual percentage change (AAPC.Results: A significant decrease in birth and fertility rates and a large increase in gross domestic product were observed together with a decrease in the total mortality rate among women, as well as an increase in life expectancy for women. A large, significant increase in BC incidence was observed (AAPC1980–1990 2.14, AAPC1990–1996 4.71, AAPC1996–2013 2.21, with a small but significant decrease in mortality after a slight increase (AAPC1980–1994 0.52, AAPC1994–2013 −0.66. During the period 1980–2013, a significant increase in CUC incidence (AAPC1980–1994 3.7, AAPC1994–2013 1.93 was observed, with an initial mortality-rate reduction followed by a significant increase (AAPC1980–2006 −1.12, AAPC2006–2013 3.74. After the initial increase of both OC incidence and mortality from 1994, the incidence rate decreased significantly (AAPC1980–1994 2.98, AAPC1994–2013 −0.49, as did the mortality rate (AAPC1980–1994 0.52, AAPC1994–2013 −0.66.Conclusion: After 1994, a decrease in OC incidence was found, while the incidence of BC and CUC continued to increase. A reduction in

  12. PREFACE: Quantum Dot 2010

    Science.gov (United States)

    Taylor, Robert A.

    2010-09-01

    These conference proceedings contain the written papers of the contributions presented at Quantum Dot 2010 (QD2010). The conference was held in Nottingham, UK, on 26-30 April 2010. The conference addressed topics in research on: 1. Epitaxial quantum dots (including self-assembled and interface structures, dots defined by electrostatic gates etc): optical properties and electron transport quantum coherence effects spin phenomena optics of dots in cavities interaction with surface plasmons in metal/semiconductor structures opto-electronics applications 2. Novel QD structures: fabrication and physics of graphene dots, dots in nano-wires etc 3. Colloidal quantum dots: growth (shape control and hybrid nanocrystals such as metal/semiconductor, magnetic/semiconductor) assembly and surface functionalisation optical properties and spin dynamics electrical and magnetic properties applications (light emitting devices and solar cells, biological and medical applications, data storage, assemblers) The Editors Acknowledgements Conference Organising Committee: Maurice Skolnick (Chair) Alexander Tartakovskii (Programme Chair) Pavlos Lagoudakis (Programme Chair) Max Migliorato (Conference Secretary) Paola Borri (Publicity) Robert Taylor (Proceedings) Manus Hayne (Treasurer) Ray Murray (Sponsorship) Mohamed Henini (Local Organiser) International Advisory Committee: Yasuhiko Arakawa (Tokyo University, Japan) Manfred Bayer (Dortmund University, Germany) Sergey Gaponenko (Stepanov Institute of Physics, Minsk, Belarus) Pawel Hawrylak (NRC, Ottawa, Canada) Fritz Henneberger (Institute for Physics, Berlin, Germany) Atac Imamoglu (ETH, Zurich, Switzerland) Paul Koenraad (TU Eindhoven, Nethehrlands) Guglielmo Lanzani (Politecnico di Milano, Italy) Jungil Lee (Korea Institute of Science and Technology, Korea) Henri Mariette (CNRS-CEA, Grenoble, France) Lu Jeu Sham (San Diego, USA) Andrew Shields (Toshiba Research Europe, Cambridge, UK) Yoshihisa Yamamoto (Stanford University, USA) Artur

  13. Unicentric study of cell therapy in chronic obstructive pulmonary disease/pulmonary emphysema

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    João Tadeu Ribeiro-Paes

    2011-01-01

    Full Text Available João Tadeu Ribeiro-Paes1, Aldemir Bilaqui2, Oswaldo T Greco2, Milton Artur Ruiz2, Monica Y Marcelino3, Talita Stessuk1, Carolina A de Faria3, Mario R Lago21Universidade Estadual Paulista (UNESP, Campus de Assis, Assis, SP, Brazil; 2Cardiovascular Diseases Institute (IMC, São José do Rio Preto, SP, Brazil; 3Inter-units Biotechnology Post Graduation Program, USP-IPT-I, Butantan, São Paulo, SP, BrazilAbstract: Within the chronic obstructive pulmonary disease (COPD spectrum, lung emphysema presents, as a primarily histopathologic feature, the destruction of pulmonary parenchyma and, accordingly, an increase in the airflow obstruction distal to the terminal bronchiole. Notwithstanding the significant advances in prevention and treatment of symptoms, no effective or curative therapy has been accomplished. In this context, cellular therapy with stem cells (SCs arises as a new therapeutic approach, with a wide application potential. The purpose of this study is to evaluate the safety of SCs infusion procedure in patients with advanced COPD (stage IV dyspnea. After selection, patients underwent clinical examination and received granulocyte colony-stimulating factor, immediately prior to the bone marrow harvest. The bone marrow mononuclear cells (BMMC were isolated and infused into a peripheral vein. The 12-month follow-up showed a significant improvement in the quality of life, as well as a clinical stable condition, which suggest a change in the natural process of the disease. Therefore, the proposed methodology in this study for BMMC cell therapy in sufferers of advanced COPD was demonstrated to be free of significant adverse effects. Although a larger sample and a greater follow-up period are needed, it is possible to infer that BMMC cell therapy introduces an unprecedented change in the course or in the natural history of emphysema, inhibiting or slowing the progression of disease. This clinical trial was registered with ClinicalTrials.gov (NCT

  14. Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger

    Directory of Open Access Journals (Sweden)

    Grigoriev Igor V

    2009-02-01

    Full Text Available Abstract Background Proteomic data is a potentially rich, but arguably unexploited, data source for genome annotation. Peptide identifications from tandem mass spectrometry provide prima facie evidence for gene predictions and can discriminate over a set of candidate gene models. Here we apply this to the recently sequenced Aspergillus niger fungal genome from the Joint Genome Institutes (JGI and another predicted protein set from another A.niger sequence. Tandem mass spectra (MS/MS were acquired from 1d gel electrophoresis bands and searched against all available gene models using Average Peptide Scoring (APS and reverse database searching to produce confident identifications at an acceptable false discovery rate (FDR. Results 405 identified peptide sequences were mapped to 214 different A.niger genomic loci to which 4093 predicted gene models clustered, 2872 of which contained the mapped peptides. Interestingly, 13 (6% of these loci either had no preferred predicted gene model or the genome annotators' chosen "best" model for that genomic locus was not found to be the most parsimonious match to the identified peptides. The peptides identified also boosted confidence in predicted gene structures spanning 54 introns from different gene models. Conclusion This work highlights the potential of integrating experimental proteomics data into genomic annotation pipelines much as expressed sequence tag (EST data has been. A comparison of the published genome from another strain of A.niger sequenced by DSM showed that a number of the gene models or proteins with proteomics evidence did not occur in both genomes, further highlighting the utility of the method.

  15. SoyDB: a knowledge database of soybean transcription factors

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    Valliyodan Babu

    2010-01-01

    Full Text Available Abstract Background Transcription factors play the crucial rule of regulating gene expression and influence almost all biological processes. Systematically identifying and annotating transcription factors can greatly aid further understanding their functions and mechanisms. In this article, we present SoyDB, a user friendly database containing comprehensive knowledge of soybean transcription factors. Description The soybean genome was recently sequenced by the Department of Energy-Joint Genome Institute (DOE-JGI and is publicly available. Mining of this sequence identified 5,671 soybean genes as putative transcription factors. These genes were comprehensively annotated as an aid to the soybean research community. We developed SoyDB - a knowledge database for all the transcription factors in the soybean genome. The database contains protein sequences, predicted tertiary structures, putative DNA binding sites, domains, homologous templates in the Protein Data Bank (PDB, protein family classifications, multiple sequence alignments, consensus protein sequence motifs, web logo of each family, and web links to the soybean transcription factor database PlantTFDB, known EST sequences, and other general protein databases including Swiss-Prot, Gene Ontology, KEGG, EMBL, TAIR, InterPro, SMART, PROSITE, NCBI, and Pfam. The database can be accessed via an interactive and convenient web server, which supports full-text search, PSI-BLAST sequence search, database browsing by protein family, and automatic classification of a new protein sequence into one of 64 annotated transcription factor families by hidden Markov models. Conclusions A comprehensive soybean transcription factor database was constructed and made publicly accessible at http://casp.rnet.missouri.edu/soydb/.

  16. Extracellular oxidative metabolism of wood decay fungi

    Energy Technology Data Exchange (ETDEWEB)

    Daniel Cullen

    2010-04-21

    Substantial progress has been made toward understanding the fundamental physiology and genetics of wood decay fungi, microbes that are capable of degrading all major components of plant cell walls. Efficient utilization of lignocellulosic biomass has been hampered in part by limitations in our understanding of enzymatic mechanisms of plant cell wall degradation. This is particularly true of woody substrates where accessibility and high lignin content substantially complicate enzymatic 'deconstruction'. The interdisciplinary research has illuminated enzymatic mechanisms essential for the conversion of lignocellulosics to simple carbohydrates and other small molecular weight products. Progress was in large part dependent on substantial collaborations with the Department of Energy's Joint Genome Institute (JGI) in Walnut Creek and Los Alamos, as well as the Catholic University, Santiago, Chile, the Royal Institute of Technology, Stockholm, the University of Minnesota, St. Paul, and colleagues at the University of Wisconsin and the Forest Products Laboratory. Early accomplishments focused on the development of experimental tools (2, 7, 22, 24-26, 32) and characterization of individual genes and enzymes (1, 3-5, 8, 9, 11, 14, 15, 17, 18, 23, 27, 33). In 2004, the genome of the most intensively studied lignin-degrading fungus, Phanerochaete chrysosporium, was published (21). This milestone lead to additional progress on this important model system (6, 10, 12, 13, 16, 28-31) and was further complemented by genome analysis of other important cellulose-degrading fungi (19, 20). These accomplishments have been highly cited and have paved the way for whole new research areas.

  17. Comparative fecal metagenomics unveils unique functional capacity of the swine gut

    Directory of Open Access Journals (Sweden)

    Martinson John

    2011-05-01

    Full Text Available Abstract Background Uncovering the taxonomic composition and functional capacity within the swine gut microbial consortia is of great importance to animal physiology and health as well as to food and water safety due to the presence of human pathogens in pig feces. Nonetheless, limited information on the functional diversity of the swine gut microbiome is available. Results Analysis of 637, 722 pyrosequencing reads (130 megabases generated from Yorkshire pig fecal DNA extracts was performed to help better understand the microbial diversity and largely unknown functional capacity of the swine gut microbiome. Swine fecal metagenomic sequences were annotated using both MG-RAST and JGI IMG/M-ER pipelines. Taxonomic analysis of metagenomic reads indicated that swine fecal microbiomes were dominated by Firmicutes and Bacteroidetes phyla. At a finer phylogenetic resolution, Prevotella spp. dominated the swine fecal metagenome, while some genes associated with Treponema and Anareovibrio species were found to be exclusively within the pig fecal metagenomic sequences analyzed. Functional analysis revealed that carbohydrate metabolism was the most abundant SEED subsystem, representing 13% of the swine metagenome. Genes associated with stress, virulence, cell wall and cell capsule were also abundant. Virulence factors associated with antibiotic resistance genes with highest sequence homology to genes in Bacteroidetes, Clostridia, and Methanosarcina were numerous within the gene families unique to the swine fecal metagenomes. Other abundant proteins unique to the distal swine gut shared high sequence homology to putative carbohydrate membrane transporters. Conclusions The results from this metagenomic survey demonstrated the presence of genes associated with resistance to antibiotics and carbohydrate metabolism suggesting that the swine gut microbiome may be shaped by husbandry practices.

  18. The evolution of microbial species - a view through the genomic lens

    Energy Technology Data Exchange (ETDEWEB)

    Varghese, Neha; Mukherjee, Supratim; ivanova, Natalia; Mavromatis, Konstantinos; Konstantinidis, Konstantinos; Kyrpides, Nikos; Pati, Amrita

    2014-03-17

    For a long time prokaryotic species definition has been under debate and a constant source of turmoil in microbiology. This has recently prompted the ASM to call for a scalable and reproducible technique, which uses meaningful commonalities to cluster microorganisms into groups corresponding to prokaryotic species. Whole-genome Average Nucleotide Identity (gANI) was previously suggested as a measure of genetic distance that generally agrees with prokaryotic species assignments based on the accepted best practices (DNA-DNA hybridization and 16S rDNA similarity). In this work, we prove that gANI is indeed the meaningful commonality based on which microorganisms can be grouped into the aforementioned clusters. By analyzing 1.76 million pairs of genomes we find that identification of the closest relatives of an organism via gANI is precise, scalable, reproducible, and reflects the evolutionary dynamics of microbes. We model the previously unexplored statistical properties of gANI using 6,000 microbial genomes and apply species-specific gANI cutoffs to reveal anomalies in the current taxonomic species definitions for almost 50percent of the species with multiple genome sequences. We also provide evidence of speciation events and genetic continuums in 17.8percent of those species. We consider disagreements between gANI-based groupings and named species and demonstrate that the former have all the desired features to serve as the much-needed natural groups for moving forward with taxonomy. Further, the groupings identified are presented in detail at http://ani.jgi-psf.org to facilitate comprehensive downstream analysis for researchers across different disciplines

  19. SCHOOL FEEDING PROGRAM USING RICE-PEA BEVERAGE IN SOME PRIMARY SCHOOLS: DOES IT HAVE BENEFIT?

    Directory of Open Access Journals (Sweden)

    Satoto Satoto

    2012-04-01

    studied. Permalink : http://ejournal.undip.ac.id/index.php/jgi/article/view/3239

  20. Efficient breakdown of lignocellulose using mixed-microbe populations for bioethanol production.

    Energy Technology Data Exchange (ETDEWEB)

    Murton, Jaclyn K.; Ricken, James Bryce; Powell, Amy Jo

    2009-11-01

    (DoE) Joint Genome Institute (JGI) to perform metatranscriptomic functional profiling of eukaryotic microbial communities of blue grama grass (Bouteloua gracilis) rhizosphere (RHZ) soils and (2) isolated and provided initial genotypic and phenotypic characterization data for thermophilic fungi. Our preliminary results show that many strains in our collection of thermophilic fungi frequently outperform industry standards in key assays; we also demonstrated that this collection is taxonomically diverse and phenotypically compelling. The studies summarized here are being performed in collaboration with University of New Mexico and are based at the Sevilleta LTER research site.

  1. Identification of a Novel L-rhamnose Uptake Transporter in the Filamentous Fungus Aspergillus niger

    Science.gov (United States)

    Sloothaak, Jasper; Odoni, Dorett I.; Martins dos Santos, Vitor A. P.; Schaap, Peter J.

    2016-01-01

    The study of plant biomass utilization by fungi is a research field of great interest due to its many implications in ecology, agriculture and biotechnology. Most of the efforts done to increase the understanding of the use of plant cell walls by fungi have been focused on the degradation of cellulose and hemicellulose, and transport and metabolism of their constituent monosaccharides. Pectin is another important constituent of plant cell walls, but has received less attention. In relation to the uptake of pectic building blocks, fungal transporters for the uptake of galacturonic acid recently have been reported in Aspergillus niger and Neurospora crassa. However, not a single L-rhamnose (6-deoxy-L-mannose) transporter has been identified yet in fungi or in other eukaryotic organisms. L-rhamnose is a deoxy-sugar present in plant cell wall pectic polysaccharides (mainly rhamnogalacturonan I and rhamnogalacturonan II), but is also found in diverse plant secondary metabolites (e.g. anthocyanins, flavonoids and triterpenoids), in the green seaweed sulfated polysaccharide ulvan, and in glycan structures from viruses and bacteria. Here, a comparative plasmalemma proteomic analysis was used to identify candidate L-rhamnose transporters in A. niger. Further analysis was focused on protein ID 1119135 (RhtA) (JGI A. niger ATCC 1015 genome database). RhtA was classified as a Family 7 Fucose: H+ Symporter (FHS) within the Major Facilitator Superfamily. Family 7 currently includes exclusively bacterial transporters able to use different sugars. Strong indications for its role in L-rhamnose transport were obtained by functional complementation of the Saccharomyces cerevisiae EBY.VW.4000 strain in growth studies with a range of potential substrates. Biochemical analysis using L-[3H(G)]-rhamnose confirmed that RhtA is a L-rhamnose transporter. The RhtA gene is located in tandem with a hypothetical alpha-L-rhamnosidase gene (rhaB). Transcriptional analysis of rhtA and rha

  2. Proposal to support the 4th international conference on nitrification and related processes (ICoN4)

    International Nuclear Information System (INIS)

    Klotz, Martin Gunter

    2016-01-01

    The 4th International Conference on Nitrification and Related Processes (ICoN4) commencing between June 27 and July 1, 2015, at the University of Alberta in Edmonton, Alberta, Canada brings together an international collection of academic, government, and private sector researchers of the global biogeochemical nitrogen cycle to share their scientific discoveries, innovations and pertinent societal impacts. The classical understanding of “nitrification” describes the two-step transformation of ammonium to nitrite and nitrite to nitrate; however, we now know from the analysis genome sequences, the application of ‘omics technologies, microbial ecology, biogeochemistry, and microbial physiology that the transformation of ammonium is not performed by a few particular groups of microorganisms nor is it confined to oxic environments. Past ICoN meetings have explored the interconnections between ammonium- and nitrite-consuming processes in all ecosystems, the emission of greenhouse gases by these processes and their control, and the intersection between intermediates of the nitrification process and other elemental cycles; this has generated tremendous progress in our understanding of the global nitrogen cycle and it has generated excitement in the next generation of N cycle researchers. Nitrification research has a long-standing connection to the Community Science Program of the DOE. Between 1999 and 2001, the JGI generated the first genome sequence of an ammonia-oxidizing bacterium, Nitrosomonas europaea ATCC 19718, and it has subsequently sequenced, or is in the process of sequencing over 50 additional genomes from ammonia-oxidizing bacteria, nitrite-oxidizing bacteria, and ammonia-oxidizing archaea. Autotrophic ammonia- and nitrite-transforming microorganisms play also a critical role in carbon cycling and sequestration in nearly all ecosystems. Not only do they control the concentration and speciation of biologically available N to plants and other

  3. Mycosphaerella fijiensis, the black leaf streak pathogen of banana: progress towards understanding pathogen biology and detection, disease development, and the challenges of control.

    Science.gov (United States)

    Churchill, Alice C L

    2011-05-01

    primary hosts of M. fijiensis, the ornamental plant Heliconia psittacorum has been reported as an alternative host. Several valuable tools and resources have been developed to overcome some of the challenges of studying this host-pathogen system. These include a DNA-mediated fungal transformation system and the ability to conduct targeted gene disruptions, reliable quantitative plant bioassays, diagnostic probes to detect and differentiate M. fijiensis from related pathogens and to distinguish strains of different mating types, and a genome sequence that has revealed a wealth of gene sequences and molecular markers to be utilized in functional and population biology studies. http://bananas.bioversityinternational.org/, http://genome.jgi-psf.org/Mycfi2/Mycfi2.home.html, http://www.isppweb.org/names_banana_pathogen.asp#fun, http://www.promusa.org/. © 2010 THE AUTHOR. MOLECULAR PLANT PATHOLOGY © 2010 BSPP AND BLACKWELL PUBLISHING LTD.

  4. Deciphering Natural Allelic Variation in Switchgrass for Biomass Yield and Quality Using a Nested Association Mapping Population

    Energy Technology Data Exchange (ETDEWEB)

    Saha, Malay C. [The Samuel Roberts Noble Foundation, Inc., Ardmore, OK (United States). Forage Improvement Division (FID); Brummer, E. Charles [The Samuel Roberts Noble Foundation, Inc., Ardmore, OK (United States); Kaeppler, Shawn [Univ. of Wisconsin, Madison, WI (United States); Bhandari, Hem S. [Univ. of Tennessee, Knoxville, TN (United States)

    2016-10-28

    Switchgrass (Panicum virgatum L.) is a C4 grass with high biomass yield potential and a model species for bioenergy feedstock development. Understanding the genetic basis of quantitative traits is essential to facilitate genome-enabled breeding programs. The nested association mapping (NAM) analysis combines the best features of both bi-parental and association analyses and can provide high power and high resolution in QTL detection and will ensure significant improvements in biomass yield and quality. To develop a NAM population of switchgrass, 15 highly diverse genotypes with specific characteristics were selected from a diversity panel and crossed to a recurrent parent, AP13, a genotype selected for whole genome sequencing and parent of a mapping population. Ten genotypes from each of the 15 F1 families were then chain crossed. Progenies form each family were randomly selected to develop the NAM population. The switchgrass NAM population consists of a total of 2000 genotypes from 15 families. All the progenies, founder parents, F1 parents (n=2350) were evaluated in replicated field trials at Ardmore, OK and Knoxville, TN. Phenotypic data on plant height, tillering ability, regrowth, flowering time, and biomass yield were collected. Dried biomass samples were also analyzed using prediction equations of NIRS at the Noble Foundation and for lignin content, S/G ratio, and sugar release characteristics at the NREL. Genomic shotgun sequencing of 15 switchgrass NAM founder parental genomes at JGI produced 28-66 Gb high-quality sequence data. Alignment of these sequences with the reference genome, AP13 (v3.0), revealed that up to 99% of the genomic sequences mapped to the reference genome. A total of 2,149 individuals from NAM populations were sequenced by exome capture and two sets of 15 SNP matrices (one for each family) were generated. QTL associated with important traits have been identified and verified in breeding populations. The QTL detected and their associated

  5. Identification of a Novel L-rhamnose Uptake Transporter in the Filamentous Fungus Aspergillus niger.

    Science.gov (United States)

    Sloothaak, Jasper; Odoni, Dorett I; Martins Dos Santos, Vitor A P; Schaap, Peter J; Tamayo-Ramos, Juan Antonio

    2016-12-01

    The study of plant biomass utilization by fungi is a research field of great interest due to its many implications in ecology, agriculture and biotechnology. Most of the efforts done to increase the understanding of the use of plant cell walls by fungi have been focused on the degradation of cellulose and hemicellulose, and transport and metabolism of their constituent monosaccharides. Pectin is another important constituent of plant cell walls, but has received less attention. In relation to the uptake of pectic building blocks, fungal transporters for the uptake of galacturonic acid recently have been reported in Aspergillus niger and Neurospora crassa. However, not a single L-rhamnose (6-deoxy-L-mannose) transporter has been identified yet in fungi or in other eukaryotic organisms. L-rhamnose is a deoxy-sugar present in plant cell wall pectic polysaccharides (mainly rhamnogalacturonan I and rhamnogalacturonan II), but is also found in diverse plant secondary metabolites (e.g. anthocyanins, flavonoids and triterpenoids), in the green seaweed sulfated polysaccharide ulvan, and in glycan structures from viruses and bacteria. Here, a comparative plasmalemma proteomic analysis was used to identify candidate L-rhamnose transporters in A. niger. Further analysis was focused on protein ID 1119135 (RhtA) (JGI A. niger ATCC 1015 genome database). RhtA was classified as a Family 7 Fucose: H+ Symporter (FHS) within the Major Facilitator Superfamily. Family 7 currently includes exclusively bacterial transporters able to use different sugars. Strong indications for its role in L-rhamnose transport were obtained by functional complementation of the Saccharomyces cerevisiae EBY.VW.4000 strain in growth studies with a range of potential substrates. Biochemical analysis using L-[3H(G)]-rhamnose confirmed that RhtA is a L-rhamnose transporter. The RhtA gene is located in tandem with a hypothetical alpha-L-rhamnosidase gene (rhaB). Transcriptional analysis of rhtA and rha

  6. Proposal to support the 4th international conference on nitrification and related processes (ICoN4)

    Energy Technology Data Exchange (ETDEWEB)

    Klotz, Martin Gunter [Univ. of North Carolina, Charlotte, NC (United States)

    2016-11-04

    The 4th International Conference on Nitrification and Related Processes (ICoN4) commencing between June 27 and July 1, 2015, at the University of Alberta in Edmonton, Alberta, Canada brings together an international collection of academic, government, and private sector researchers of the global biogeochemical nitrogen cycle to share their scientific discoveries, innovations and pertinent societal impacts. The classical understanding of “nitrification” describes the two-step transformation of ammonium to nitrite and nitrite to nitrate; however, we now know from the analysis genome sequences, the application of ‘omics technologies, microbial ecology, biogeochemistry, and microbial physiology that the transformation of ammonium is not performed by a few particular groups of microorganisms nor is it confined to oxic environments. Past ICoN meetings have explored the interconnections between ammonium- and nitrite-consuming processes in all ecosystems, the emission of greenhouse gases by these processes and their control, and the intersection between intermediates of the nitrification process and other elemental cycles; this has generated tremendous progress in our understanding of the global nitrogen cycle and it has generated excitement in the next generation of N cycle researchers. Nitrification research has a long-standing connection to the Community Science Program of the DOE. Between 1999 and 2001, the JGI generated the first genome sequence of an ammonia-oxidizing bacterium, Nitrosomonas europaea ATCC 19718, and it has subsequently sequenced, or is in the process of sequencing over 50 additional genomes from ammonia-oxidizing bacteria, nitrite-oxidizing bacteria, and ammonia-oxidizing archaea. Autotrophic ammonia- and nitrite-transforming microorganisms play also a critical role in carbon cycling and sequestration in nearly all ecosystems. Not only do they control the concentration and speciation of biologically available N to plants and other

  7. Identification of a Novel L-rhamnose Uptake Transporter in the Filamentous Fungus Aspergillus niger.

    Directory of Open Access Journals (Sweden)

    Jasper Sloothaak

    2016-12-01

    Full Text Available The study of plant biomass utilization by fungi is a research field of great interest due to its many implications in ecology, agriculture and biotechnology. Most of the efforts done to increase the understanding of the use of plant cell walls by fungi have been focused on the degradation of cellulose and hemicellulose, and transport and metabolism of their constituent monosaccharides. Pectin is another important constituent of plant cell walls, but has received less attention. In relation to the uptake of pectic building blocks, fungal transporters for the uptake of galacturonic acid recently have been reported in Aspergillus niger and Neurospora crassa. However, not a single L-rhamnose (6-deoxy-L-mannose transporter has been identified yet in fungi or in other eukaryotic organisms. L-rhamnose is a deoxy-sugar present in plant cell wall pectic polysaccharides (mainly rhamnogalacturonan I and rhamnogalacturonan II, but is also found in diverse plant secondary metabolites (e.g. anthocyanins, flavonoids and triterpenoids, in the green seaweed sulfated polysaccharide ulvan, and in glycan structures from viruses and bacteria. Here, a comparative plasmalemma proteomic analysis was used to identify candidate L-rhamnose transporters in A. niger. Further analysis was focused on protein ID 1119135 (RhtA (JGI A. niger ATCC 1015 genome database. RhtA was classified as a Family 7 Fucose: H+ Symporter (FHS within the Major Facilitator Superfamily. Family 7 currently includes exclusively bacterial transporters able to use different sugars. Strong indications for its role in L-rhamnose transport were obtained by functional complementation of the Saccharomyces cerevisiae EBY.VW.4000 strain in growth studies with a range of potential substrates. Biochemical analysis using L-[3H(G]-rhamnose confirmed that RhtA is a L-rhamnose transporter. The RhtA gene is located in tandem with a hypothetical alpha-L-rhamnosidase gene (rhaB. Transcriptional analysis of rhtA and

  8. Sequence Ready Characterization of the Pericentromeric Region of 19p12

    Energy Technology Data Exchange (ETDEWEB)

    Evan E. Eichler

    2006-08-31

    Current mapping and sequencing strategies have been inadequate within the proximal portion of 19p12 due, in part, to the presence of a recently expanded ZNF (zinc-finger) gene family and the presence of large (25-50 kb) inverted beta-satellite repeat structures which bracket this tandemly duplicated gene family. The virtual of absence of classically defined “unique” sequence within the region has hampered efforts to identify and characterize a suitable minimal tiling path of clones which can be used as templates required for finished sequencing of the region. The goal of this proposal is to develop and implement a novel sequence-anchor strategy to generate a contiguous BAC map of the most proximal portion of chromosome 19p12 for the purpose of complete sequence characterization. The target region will be an estimated 4.5 Mb of DNA extending from STS marker D19S450 (the beginning of the ZNF gene cluster) to the centromeric (alpha-satellite) junction of 19p11. The approach will entail 1) pre-selection of 19p12 BAC and cosmid clones (NIH approved library) utilizing both 19p12 -unique and 19p12-SPECIFIC repeat probes (Eichler et al., 1998); 2) the generation of a BAC/cosmid end-sequence map across the region with a density of one marker every 8kb; 3) the development of a second-generation of STS (sequence tagged sites) which will be used to identify and verify clonal overlap at the level of the sequence; 4) incorporation of these sequence-anchored overlapping clones into existing cosmid/BAC restriction maps developed at Livermore National Laboratory; and 5) validation of the organization of this region utilizing high-resolution FISH techniques (extended chromatin analysis) on monochromosomal 19 somatic cell hybrids and parental cell lines of source material. The data generated will be used in the selection of the most parsimonious tiling path of BAC clones to be sequenced as part of the JGI effort on chromosome 19 and should serve as a model for the sequence

  9. Correction: Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi

    Science.gov (United States)

    2014-01-01

    Abstract The version of this article published in BMC Genomics 2013, 14: 274, contains 9 unpublished genomes (Botryobasidium botryosum, Gymnopus luxurians, Hypholoma sublateritium, Jaapia argillacea, Hebeloma cylindrosporum, Conidiobolus coronatus, Laccaria amethystina, Paxillus involutus, and P. rubicundulus) downloaded from JGI website. In this correction, we removed these genomes after discussion with editors and data producers whom we should have contacted before downloading these genomes. Removing these data did not alter the principle results and conclusions of our original work. The relevant Figures 1, 2, 3, 4 and 6; and Table 1 have been revised. Additional files 1, 3, 4, and 5 were also revised. We would like to apologize for any confusion or inconvenience this may have caused. Background Fungi produce a variety of carbohydrate activity enzymes (CAZymes) for the degradation of plant polysaccharide materials to facilitate infection and/or gain nutrition. Identifying and comparing CAZymes from fungi with different nutritional modes or infection mechanisms may provide information for better understanding of their life styles and infection models. To date, over hundreds of fungal genomes are publicly available. However, a systematic comparative analysis of fungal CAZymes across the entire fungal kingdom has not been reported. Results In this study, we systemically identified glycoside hydrolases (GHs), polysaccharide lyases (PLs), carbohydrate esterases (CEs), and glycosyltransferases (GTs) as well as carbohydrate-binding modules (CBMs) in the predicted proteomes of 94 representative fungi from Ascomycota, Basidiomycota, Chytridiomycota, and Zygomycota. Comparative analysis of these CAZymes that play major roles in plant polysaccharide degradation revealed that fungi exhibit tremendous diversity in the number and variety of CAZymes. Among them, some families of GHs and CEs are the most prevalent CAZymes that are distributed in all of the fungi analyzed

  10. Phytophthora cinnamomi.

    Science.gov (United States)

    Hardham, Adrienne R; Blackman, Leila M

    2018-02-01

    and fibrous roots, but which can also cause stem cankers. Root damage may inhibit water movement from roots to shoots, leading to dieback of young shoots. USEFUL WEBSITES: http://fungidb.org/fungidb/; http://genome.jgi.doe.gov/Phyci1/Phyci1.home.html; http://www.ncbi.nlm.nih.gov/assembly/GCA_001314365.1; http://www.ncbi.nlm.nih.gov/assembly/GCA_001314505.1. © 2017 BSPP AND JOHN WILEY & SONS LTD.

  11. Development of Vertical Cable Seismic System

    Science.gov (United States)

    Asakawa, E.; Murakami, F.; Sekino, Y.; Okamoto, T.; Ishikawa, K.; Tsukahara, H.; Shimura, T.

    2011-12-01

    In 2009, Ministry of Education, Culture, Sports, Science and Technology(MEXT) started the survey system development for Hydrothermal deposit. We proposed the Vertical Cable Seismic (VCS), the reflection seismic survey with vertical cable above seabottom. VCS has the following advantages for hydrothermal deposit survey. (1) VCS is an efficient high-resolution 3D seismic survey in limited area. (2) It achieves high-resolution image because the sensors are closely located to the target. (3) It avoids the coupling problems between sensor and seabottom that cause serious damage of seismic data quality. (4) Because of autonomous recording system on sea floor, various types of marine source are applicable with VCS such as sea-surface source (GI gun etc.) , deep-towed or ocean bottom source. Our first experiment of 2D/3D VCS surveys has been carried out in Lake Biwa, JAPAN, in November 2009. The 2D VCS data processing follows the walk-away VSP, including wave field separation and depth migration. Seismic Interferometry technique is also applied. The results give much clearer image than the conventional surface seismic. Prestack depth migration is applied to 3D data to obtain good quality 3D depth volume. Seismic Interferometry technique is applied to obtain the high resolution image in the very shallow zone. Based on the feasibility study, we have developed the autonomous recording VCS system and carried out the trial experiment in actual ocean at the water depth of about 400m to establish the procedures of deployment/recovery and to examine the VC position or fluctuation at seabottom. The result shows that the VC position is estimated with sufficient accuracy and very little fluctuation is observed. Institute of Industrial Science, the University of Tokyo took the research cruise NT11-02 on JAMSTEC R/V Natsushima in February, 2011. In the cruise NT11-02, JGI carried out the second VCS survey using the autonomous VCS recording system with the deep towed source provided by

  12. IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites.

    Science.gov (United States)

    Hadjithomas, Michalis; Chen, I-Min Amy; Chu, Ken; Ratner, Anna; Palaniappan, Krishna; Szeto, Ernest; Huang, Jinghua; Reddy, T B K; Cimermančič, Peter; Fischbach, Michael A; Ivanova, Natalia N; Markowitz, Victor M; Kyrpides, Nikos C; Pati, Amrita

    2015-07-14

    In the discovery of secondary metabolites, analysis of sequence data is a promising exploration path that remains largely underutilized due to the lack of computational platforms that enable such a systematic approach on a large scale. In this work, we present IMG-ABC (https://img.jgi.doe.gov/abc), an atlas of biosynthetic gene clusters within the Integrated Microbial Genomes (IMG) system, which is aimed at harnessing the power of "big" genomic data for discovering small molecules. IMG-ABC relies on IMG's comprehensive integrated structural and functional genomic data for the analysis of biosynthetic gene clusters (BCs) and associated secondary metabolites (SMs). SMs and BCs serve as the two main classes of objects in IMG-ABC, each with a rich collection of attributes. A unique feature of IMG-ABC is the incorporation of both experimentally validated and computationally predicted BCs in genomes as well as metagenomes, thus identifying BCs in uncultured populations and rare taxa. We demonstrate the strength of IMG-ABC's focused integrated analysis tools in enabling the exploration of microbial secondary metabolism on a global scale, through the discovery of phenazine-producing clusters for the first time in Alphaproteobacteria. IMG-ABC strives to fill the long-existent void of resources for computational exploration of the secondary metabolism universe; its underlying scalable framework enables traversal of uncovered phylogenetic and chemical structure space, serving as a doorway to a new era in the discovery of novel molecules. IMG-ABC is the largest publicly available database of predicted and experimental biosynthetic gene clusters and the secondary metabolites they produce. The system also includes powerful search and analysis tools that are integrated with IMG's extensive genomic/metagenomic data and analysis tool kits. As new research on biosynthetic gene clusters and secondary metabolites is published and more genomes are sequenced, IMG-ABC will continue to

  13. Itaalia konstrueerimine nõukogude reisikirjas. The Construction of Italy in Soviet Travelogues

    Directory of Open Access Journals (Sweden)

    Anneli Kõvamees

    2012-04-01

    Full Text Available The focus of the article is Aimée Beekman’s travelogue Plastmassist südamega madonna (Madonna With a Plastic Heart, 1963. It also covers Juhan Kahk’s travelogue Alpide taga on moonpunane Itaalia (Behind the Alps Lies Poppy-Red Italy, 1967, Artur Vader’s Itaalia päikese all (Under Italy’s Sun, 1973, the chapters on Italy in Voldemar Panso’s travel novel Laevaga Leningradist Odessasse ehk Miks otse minna, kui ringi saab (From Leningrad to Odessa by Boat or: Why Go Straight When You Can Go Around, 1957, Max Laosson’s Nato-blokk turisti bloknoodis (Notebook of a Tourist in the Nato Bloc, 1962 and Debora Vaarandi’s Välja õuest ja väravast (From the Yard and the Gate, 1970. My aim is to analyse Soviet Estonian authors’ image of Italy in order to see what characterises the Soviet travelogue. The theoretical background of the article is the research field of imagology within literary studies. Imagology and image studies deal with the depiction of countries and peoples. With the basic concepts of imagology as a starting point, the typical topic developments of the Soviet travelogue are covered, such as the thematic features of the worker, Western society and its mechanics and idiosyncracies, faith and the church, the question of the so-called ’real Italy’ and the characteristic perspicacity of writers of Soviet travelogues. When it comes to Estonian travelogues, one can talk about a Tuglasesque travelogue tradition; Friedebert Tuglas is considered one of the pioneers behind the Estonian travelogue with his works Teekond Hispaania (A Journey to Spain, 1918 and Teekond Põhja-Aafrika (A Journey to North Africa, I–III, 1928–1930. In the Tuglasesque travelogue, books of history and art, fiction and personal impressions are intertwined. The travelogue is educational and makes for good reading. The Soviet travelogue spans certain topics from a Soviet point of view and uses Soviet rhetorics and logics. The authors usually don

  14. Information transfer through quantum channels

    International Nuclear Information System (INIS)

    Kretschmann, D.

    2007-01-01

    This PhD thesis represents work done between Aug. 2003 and Dec. 2006 in Reinhard F. Werner's quantum information theory group at Technische Universitaet Braunschweig, and Artur Ekert's Centre for Quantum Computation at the University of Cambridge. My thesis falls into the field of abstract quantum information theory. This work investigates both fundamental properties of quantum channels and their asymptotic capacities for classical as well as quantum information transfer. Stinespring's theorem is the basic structure theorem for quantum channels. It implies that every quantum channel can be represented as a unitary evolution on an enlarged system. In Ch. 3 we present a continuity theorem for Stinespring's representation: two quantum channels are similar if and only if it is possible to find unitary implementations that are likewise similar, with dimension-independent norm bounds. The continuity theorem allows to derive a formulation of the information-disturbance tradeoff in terms of quantum channels, and a continuity estimate for the no-broadcasting principle. In Ch. 4 we then apply the continuity theorem to give a strengthened no-go proof for quantum bit commitment, an important cryptographic primitive. This result also provides a natural characterization of those protocols that fall outside the standard setting of unconditional security, and thus may allow secure bit commitment. We present a new such protocol whose security relies on decoherence in the receiver's lab. Ch. 5 reviews the capacities of quantum channels for the transfer of both classical and quantum information, and investigates several variations in the notion of channel capacity. Memory effects are then investigated in detail in Ch. 6. We advertise a model which is sufficiently general to encompass all causal automata: every quantum process in which the outputs up to any given time t do not depend on the inputs at times t'>t can be represented as a concatenated memory channel. We then explain how

  15. Surtos populacionais de Bemisia tabaci no estado de São Paulo Outbreaks of Bemisia tabaci in the São Paulo State, Brazil

    Directory of Open Access Journals (Sweden)

    André Luiz Lourenção

    1994-01-01

    Full Text Available A partir de 1991, tem sido observada a presença da mosca-branca Bemisia tabaci (Genn. (Homoptera: Aleyrodidae em altas populações em hortaliças e orna-mentais nos municípios paulistas de Paulínia, Holambra, Jaguariúna e Artur Nogueira. Foram constatadas infestações severas em tomateiro, brócolos, berinjela e aboboreira; nesta última, o sintoma observado em plantas infestadas pela mosca-branca é o prateamento da face superior das folhas, em conjunto com queda drástica da produção. Uma lavoura de tomate severamente infestada por B. tabaci apresentava o sintoma referido colo amadurecimento irregular dos frutos do tomateiro; plantas invasoras presentes nessa área também foram intensamente colonizadas, principalmente Sida rhombifolia L., Sonchus oleraceus L., Solanum viarum Dun. e Ipomoea acuminata Roem. & Schult. Em Holambra, verificaram-se ataques intensos em plantas ornamentais, principalmente crisântemo (Chrysantemum morifolium Ramat. e bico-de-papagaio (Euphorbia pulcherrima Willd.; roseiras foral pouco colonizadas. Nessas hortaliças e nas ornamentais, a aplicação quase diária de inseticidas não reduziu a infestação do inseto. Além dessas plantas, campos de algodão, em Holambra, e de feijão, em Paulínia, também foram infestados por B. tabaci. Nos E.U.A., a capacidade de certas populações de B. tabaci de induzir o prateamento da folha em aboboreira e de colonizar intensamente E. pulcherrima, entre outros fatores, têm levado à distinção do biótipo "B" ou "poinsétia", nome vulgar dessa euforbiácea; todavia, estudos recentes na Califórnia (E.U.A. mostram a possibilidade de se tratar de duas espécies distintas. Dada a similaridade entre as infestações associadas a B. tabaci que vêm ocorrendo naquele país e, mais recentemente, no Brasil, é provável que o biótipo B ou essa nova espécie tenha sido aqui introduzido.Since 1991, an increase in the populations of the whitefly Bemisia tabaci (Genn. (Homoptera

  16. Information transfer through quantum channels

    Energy Technology Data Exchange (ETDEWEB)

    Kretschmann, D.

    2007-03-12

    This PhD thesis represents work done between Aug. 2003 and Dec. 2006 in Reinhard F. Werner's quantum information theory group at Technische Universitaet Braunschweig, and Artur Ekert's Centre for Quantum Computation at the University of Cambridge. My thesis falls into the field of abstract quantum information theory. This work investigates both fundamental properties of quantum channels and their asymptotic capacities for classical as well as quantum information transfer. Stinespring's theorem is the basic structure theorem for quantum channels. It implies that every quantum channel can be represented as a unitary evolution on an enlarged system. In Ch. 3 we present a continuity theorem for Stinespring's representation: two quantum channels are similar if and only if it is possible to find unitary implementations that are likewise similar, with dimension-independent norm bounds. The continuity theorem allows to derive a formulation of the information-disturbance tradeoff in terms of quantum channels, and a continuity estimate for the no-broadcasting principle. In Ch. 4 we then apply the continuity theorem to give a strengthened no-go proof for quantum bit commitment, an important cryptographic primitive. This result also provides a natural characterization of those protocols that fall outside the standard setting of unconditional security, and thus may allow secure bit commitment. We present a new such protocol whose security relies on decoherence in the receiver's lab. Ch. 5 reviews the capacities of quantum channels for the transfer of both classical and quantum information, and investigates several variations in the notion of channel capacity. Memory effects are then investigated in detail in Ch. 6. We advertise a model which is sufficiently general to encompass all causal automata: every quantum process in which the outputs up to any given time t do not depend on the inputs at times t'>t can be represented as a concatenated memory

  17. The oomycete broad-host-range pathogen Phytophthora capsici.

    Science.gov (United States)

    Lamour, Kurt H; Stam, Remco; Jupe, Julietta; Huitema, Edgar

    2012-05-01

    . For many cucurbit fruit, the expanding lesions produce fresh sporangia over days (or even weeks depending on the size of the fruit) and the fruit often look as if they have been dipped in white powdered confectioner's sugar (Fig. 1). Generally, hyphae do not emerge from infected plants or fruit (common with Pythium infections) and all that is visible on the surface of an infected plant is sporangia. Phytophthora capsici presents an oomycete worst-case scenario to growers as it has a broad host range, often produces long-lived dormant sexual spores, has extensive genotypic diversity and has an explosive asexual disease cycle. It is becoming increasingly apparent that novel control strategies are needed to safeguard food production from P. capsici and other oomycetes. Considering that P. capsici is easy to grow, mate and manipulate in the laboratory and infects many plant species, this pathogen is a robust model for investigations, particularly those related to sexual reproduction, host range and virulence. Phytophthora capsici genome database: http://genome.jgi-psf.org/Phyca11/Phyca11.home.html. Molecular tools to identify Phytophthora isolates: http://phytophthora-id.org. © 2011 THE AUTHORS. MOLECULAR PLANT PATHOLOGY © 2011 BSPP AND BLACKWELL PUBLISHING LTD.

  18. Unveiling Microbial Carbon Cycling Processes in Key U.S. Soils using ''Omics''

    Energy Technology Data Exchange (ETDEWEB)

    Myrold, David D. [Oregon State Univ., Corvallis, OR (United States); Bottomely, Peter J. [Oregon State Univ., Corvallis, OR (United States); Jumpponen, Ari [Kansas State Univ., Manhattan, KS (United States); Rice, Charles W. [Kansas State Univ., Manhattan, KS (United States); Zeglin, Lydia H. [Kansas State Univ., Manhattan, KS (United States); David, Maude M. [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Jansson, Janet K. [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Prestat, Emmanuel [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Hettich, Robert L. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)

    2014-09-17

    Soils process and store large amounts of C; however, considerable uncertainty still exists about the details of that influence microbial partitioning of C into soil C pools, and what are the main influential forces that control the fraction of the C input that is stabilized. The soil microbial community is genotypically and phenotypically diverse. Despite our ability to predict the kinds of regional environmental changes that will accompany global climate change, it is not clear how the microbial community will respond to climate-induced modification of precipitation and inter-precipitation intervals, and if this response will affect the fate of C deposited into soil by the local plant community. Part of this uncertainty lies with our ignorance of how the microbial community adapts genotypically and physiologically to changes in soil moisture brought about by shifts in precipitation. Our overarching goal is to harness the power of multiple meta-omics tools to gain greater understanding of the functioning of whole-soil microbial communities and their role in C cycling. We will do this by meeting the following three objectives: 1. Further develop and optimize a combination of meta-omics approaches to study how environmental factors affect microbially-mediated C cycling processes. 2. Determine the impacts of long-term changes in precipitation timing on microbial C cycling using an existing long-term field manipulation of a tallgrass prairie soil. 3. Conduct laboratory experiments that vary moisture and C inputs to confirm field observations of the linkages between microbial communities and C cycling processes. We took advantage of our state-of-the-art expertise in community “omics” to better understand the functioning soil C cycling within the Great Prairie ecosystem, including our ongoing Konza Prairie soil metagenome flagship project at JGI and the unique rainfall manipulation plots (RaMPs) established at this site more than a decade ago. We employed a systems

  19. Moleculo Long-Read Sequencing Facilitates Assembly and Genomic Binning from Complex Soil Metagenomes

    Energy Technology Data Exchange (ETDEWEB)

    White, Richard Allen; Bottos, Eric M.; Roy Chowdhury, Taniya; Zucker, Jeremy D.; Brislawn, Colin J.; Nicora, Carrie D.; Fansler, Sarah J.; Glaesemann, Kurt R.; Glass, Kevin; Jansson, Janet K.; Langille, Morgan

    2016-06-28

    ABSTRACT

    Soil metagenomics has been touted as the “grand challenge” for metagenomics, as the high microbial diversity and spatial heterogeneity of soils make them unamenable to current assembly platforms. Here, we aimed to improve soil metagenomic sequence assembly by applying the Moleculo synthetic long-read sequencing technology. In total, we obtained 267 Gbp of raw sequence data from a native prairie soil; these data included 109.7 Gbp of short-read data (~100 bp) from the Joint Genome Institute (JGI), an additional 87.7 Gbp of rapid-mode read data (~250 bp), plus 69.6 Gbp (>1.5 kbp) from Moleculo sequencing. The Moleculo data alone yielded over 5,600 reads of >10 kbp in length, and over 95% of the unassembled reads mapped to contigs of >1.5 kbp. Hybrid assembly of all data resulted in more than 10,000 contigs over 10 kbp in length. We mapped three replicate metatranscriptomes derived from the same parent soil to the Moleculo subassembly and found that 95% of the predicted genes, based on their assignments to Enzyme Commission (EC) numbers, were expressed. The Moleculo subassembly also enabled binning of >100 microbial genome bins. We obtained via direct binning the first complete genome, that of “CandidatusPseudomonas sp. strain JKJ-1” from a native soil metagenome. By mapping metatranscriptome sequence reads back to the bins, we found that several bins corresponding to low-relative-abundanceAcidobacteriawere highly transcriptionally active, whereas bins corresponding to high-relative-abundanceVerrucomicrobiawere not. These results demonstrate that Moleculo sequencing provides a significant advance for resolving complex soil microbial communities.

    IMPORTANCESoil microorganisms carry out key processes for life on our planet, including cycling of carbon and other nutrients and supporting growth of plants. However, there is poor molecular-level understanding of their

  20. HUBUNGAN KECUKUPAN ASAM EIKOSAPENTANOAT (EPA, ASAM DOKOSAHEKSANOAT (DHA IKAN DAN STATUS GIZI DENGAN PRESTASI BELAJAR SISWA

    Directory of Open Access Journals (Sweden)

    Siti Zulaihah

    2012-04-01

    belajar siswa baik. Kata kunci: Omega 3, EPA, DHA, status gizi, prestasi belajar, siswa. Permalink: http://ejournal.undip.ac.id/index.php/jgi/article/view/3241

  1. Incorporating Genomics and Bioinformatics across the Life Sciences Curriculum

    Energy Technology Data Exchange (ETDEWEB)

    Ditty, Jayna L.; Kvaal, Christopher A.; Goodner, Brad; Freyermuth, Sharyn K.; Bailey, Cheryl; Britton, Robert A.; Gordon, Stuart G.; Heinhorst, Sabine; Reed, Kelynne; Xu, Zhaohui; Sanders-Lorenz, Erin R.; Axen, Seth; Kim, Edwin; Johns, Mitrick; Scott, Kathleen; Kerfeld, Cheryl A.

    2011-08-01

    into courses or independent research projects requires infrastructure for organizing and assessing student work. Here, we present a new platform for faculty to keep current with the rapidly changing field of bioinformatics, the Integrated Microbial Genomes Annotation Collaboration Toolkit (IMG-ACT). It was developed by instructors from both research-intensive and predominately undergraduate institutions in collaboration with the Department of Energy-Joint Genome Institute (DOE-JGI) as a means to innovate and update undergraduate education and faculty development. The IMG-ACT program provides a cadre of tools, including access to a clearinghouse of genome sequences, bioinformatics databases, data storage, instructor course management, and student notebooks for organizing the results of their bioinformatic investigations. In the process, IMG-ACT makes it feasible to provide undergraduate research opportunities to a greater number and diversity of students, in contrast to the traditional mentor-to-student apprenticeship model for undergraduate research, which can be too expensive and time-consuming to provide for every undergraduate. The IMG-ACT serves as the hub for the network of faculty and students that use the system for microbial genome analysis. Open access of the IMG-ACT infrastructure to participating schools ensures that all types of higher education institutions can utilize it. With the infrastructure in place, faculty can focus their efforts on the pedagogy of bioinformatics, involvement of students in research, and use of this tool for their own research agenda. What the original faculty members of the IMG-ACT development team present here is an overview of how the IMG-ACT program has affected our development in terms of teaching and research with the hopes that it will inspire more faculty to get involved.

  2. Laboratory investigation of the distribution of travel distance and rest period of sediment particles from PTV data

    Science.gov (United States)

    Ferreira, Rui M. L.; Antico, Federica

    2016-04-01

    Foundation for Science and Technology (FCT) project RECI/ECM-HID/0371/2012 and by Project SediTrans funded by the European Commission under the 7th Framework Programme. References Ferreira, R.M.L; Hassan, M.A. and Ferrer-Boix, C. (2015) Principles of bedload transport of non-cohesive sediment in open-channels. In Pawel Rowinsky and Artur Radecki-Pawlick (Eds) "Rivers-physical, fluvial and environmental processes", Chapter 13, pp: 323-372, Springer. ISBN: 978-3-319-17718-2. Doi: 10.1007/978-3-319-17719-9_13 Hassan, M.A., Voepel, H., Schumer, R., Parker, G., and Fraccarollo, L. (2013). Displacement characteristics of coarse fluvial bed sediment, Journal of Geophysical Research - Earth Surface, 118, 155-165. Lamarre, H., and Roy, A.G. (2008). The role of morphology on the displacement of particles in a step-pool river system. Geomorphology, 99, 270-279. McNamara, J. P. and Borden, C. (2004). Observations on the movement of coarse gravel using implanted motion-sensing radio transmitters. Hydrological Processes 18(10), 1871-1884.

  3. Presentation

    Directory of Open Access Journals (Sweden)

    Eduardo Vicente

    2013-06-01

    effectivities more than a number of fixed essential characteristics. Luiz Artur Ferrareto (UFRGS, undertaking a theoretical proposal for categorizing radio content in four different levels of planning (segment, form, programming and content itself tries to “compare and contrast the practices of Brazilian commercial broadcasting companies to those used on the radio in the United States, a reference market for our national entrepreneurs”. Madalena Oliveira (University of Minho focuses on the current stage of communication researches in Portugal reflecting on the challenges for studying a culture based on listening in times of looking. Marko Ala-Fossi, (University of Tampere beginning with the statement that “radio evolution greatly depends not only on the cultural context of a country but also on the whole social, political, economic development of societies” gives us a projection on radio development around the world for the next decades. Closing the dossier, Rafael Duarte Oliveira Venancio (UFU assuming radio as language by definition and not as a device understands it as a section and an operating model in such language as it intersects the world. Another six articles, not enrolled in the dossier, round the edition off. Fernando de Tacca debates the category of “photocine” recurring to three recent Spanish productions. Gustavo Souza investigates the possibility of identifying a point of view in documentary movies while establishing a debate that joins the materialities of image and sound with the subjectivity resulting from interpretation. Vinicius Bandeira develops on the special duplicity present in the movies between what is and what is not subsumed by the camera. Neide Jallageas proposes the study of visual communication design from the first modelings, attempting especially to the radical propositions from the early XXth century avant-garde movement. Gilson Schwartz debates on the impact from the distribution of videogames as hegemonic cultural practice in

  4. Editorial: Focus on Atom Optics and its Applications

    Science.gov (United States)

    Schmidt-Kaler, F.; Pfau, T.; Schmelcher, P.; Schleich, W.

    2010-06-01

    Couvert, B Georgeot and D Guéry-Odelin Analysis of the entanglement between two individual atoms using global Raman rotations A Gaëtan, C Evellin, J Wolters, P Grangier, T Wilk and A Browaeys Spin polarization transfer in ground and metastable helium atom collisions D Vrinceanu and H R Sadeghpour A fiber Fabry-Perot cavity with high finesse D Hunger, T Steinmetz, Y Colombe, C Deutsch, T W Hänsch and J Reichel Atomic wave packets in amplitude-modulated vertical optical lattices A Alberti, G Ferrari, V V Ivanov, M L Chiofalo and G M Tino Atom interferometry with trapped Bose-Einstein condensates: impact of atom-atom interactions Julian Grond, Ulrich Hohenester, Igor Mazets and Jörg Schmiedmayer Storage of protonated water clusters in a biplanar multipole rf trap C Greve, M Kröner, S Trippel, P Woias, R Wester and M Weidemüller Single-atom detection on a chip: from realization to application A Stibor, H Bender, S Kühnhold, J Fortágh, C Zimmermann and A Günther Ultracold atoms as a target: absolute scattering cross-section measurements P Würtz, T Gericke, A Vogler and H Ott Entanglement-assisted atomic clock beyond the projection noise limit Anne Louchet-Chauvet, Jürgen Appel, Jelmer J Renema, Daniel Oblak, Niels Kjaergaard and Eugene S Polzik Towards the realization of atom trap trace analysis for 39Ar J Welte, F Ritterbusch, I Steinke, M Henrich, W Aeschbach-Hertig and M K Oberthaler Resonant superfluidity in an optical lattice I Titvinidze, M Snoek and W Hofstetter Interference of interacting matter waves Mattias Gustavsson, Elmar Haller, Manfred J Mark, Johann G Danzl, Russell Hart, Andrew J Daley and Hanns-Christoph Nägerl Magnetic trapping of NH molecules with 20 s lifetimes E Tsikata, W C Campbell, M T Hummon, H-I Lu and J M Doyle Imprinting patterns of neutral atoms in an optical lattice using magnetic resonance techniques Michal Karski, Leonid Förster, Jai-Min Choi, Andreas Steffen, Noomen Belmechri, Wolfgang Alt, Dieter Meschede and Artur Widera

  5. PREFACE: XVth International Conference on Calorimetry in High Energy Physics (CALOR2012)

    Science.gov (United States)

    Akchurin, Nural

    2012-12-01

    Livan, Pavia Univ. & INFN Pasquale Lubrano, INFN Perugia Steve Magill, ANL Amelia Maio, LIPP Lisbon Horst Oberlack, MPI Munich Adam Para, FNAL Klaus Pretzl, Univ. of Bern Yifang Wang, IHEP Beijing Richard Wigmans, TTU Ren-Yuan Zhu, Caltech Local Organizing Committee: Nural Akchurin, TTU Debra Boyce, TTU (Secretary) Xiadong Jiang, LANL Jon Kapustinsky, LANL Sung-Won Lee, TTU Sally Seidel, UNM Igor Volobouev, TTU Session Conveners: LHC I-III: David Barney (CERN) Ana Henriques (CERN) Sally Seidel (UNM) Calorimetry Techniques I-II: Francesca Tedaldi (ETH-Zurich) Tao Hu (IHEP-Beijing) Calorimetry Techniques III-IV: Craig Woody (BNL) Tohru Takeshita (Shinshu) Astrophysics and Neutrinos: Don Groom (LBNL) Steve Magill (ANL) Operating Calorimeters: Jordan Damgov (TTU) Gabriella Gaudio (INFN-Pavia) Frank Chlebana (FNAL) Algorithms and Simulations: Artur Apresyan (Caltech) Igor Volobouev (TTU) Front-end and Trigger: Chris Tully (Princeton) Kejun Zhu (IHEP-Beijing) Future Calorimetry: Michele Livan (Pavia Univ.) Frank Simon (MPI) Vishnu Zutshi (NICADD) List of Participants: ABOUZEID, Hass University of Toronto AKCHURIN, Nural Texas Tech University ANDEEN, Timothy Columbia University ANDERSON, Jake Fermilab APRESYAN, Artur California Institute of Technology AUFFRAY, Etiennette CERN BARILLARI, Teresa Max-Planck-Inst. fuer Physik BARNEY, David CERN BESSON, Dave University of Kansas BOYCE, Debra Texas Tech University BRUEL, Philippe LLR, Ecole Polytechnique, CNRS/IN2P3 BUCHANAN, Norm Colorado State University CARLOGANU, Cristina LPC Clermont Ferrand / IN2P3 / CNRS CHEFDEVILLE, Maximilien CNRS/IN2P3/LAPP CHLEBANA, Frank Fermilab CLARK, Jonathan Texas Tech University CONDE MUINO, Patricia LIP-Lisboa COWDEN, Christopher Texas Tech University DA SILVA, Cesar Luiz Los Alamos National Lab DAMGOV, Jordan Texas Tech University DAVYGORA, Yuriy University of Heidelberg DEMERS, Sarah Yale University EIGEN, Gerald University of Bergen EUSEBI, Ricardo Texas A&M University FERRI, Federico CEA

  6. EDITORIAL: Colloidal dispersions in external fields Colloidal dispersions in external fields

    Science.gov (United States)

    Löwen, Hartmut

    2012-11-01

    ller, Bastian Sieber, Holger Schweinfurth, Holger Reiber and Gerhard Nägele Electrokinetics on superhydrophobic surfacesPeriklis Papadopoulos, Xu Deng, Doris Vollmer and Hans-Jürgen Butt Numerical electrokineticsR Schmitz and B Dünweg Dielectric response of nanoscopic spherical colloids in alternating electric fields: a dissipative particle dynamics simulationJiajia Zhou and Friederike Schmid Self-assembly of colloidal particles into strings in a homogeneous external electric or magnetic fieldFrank Smallenburg, Hanumantha Rao Vutukuri, Arnout Imhof, Alfons van Blaaderen and Marjolein Dijkstra The nature of the laning transition in two dimensionsT Glanz and H Löwen Microscopic theory for anisotropic pair correlations in driven binary mixturesMatthias Kohl, Alexei V Ivlev, Philip Brandt, Gregor E Morfill and Hartmut Löwen Dynamics of individual colloidal particles in one-dimensional random potentials: a simulation studyRichard D L Hanes and Stefan U Egelhaaf An interacting dipole model to explore broadband transverse optical bindingMichael Mazilu, Andrew Rudhall, Ewan M Wright and Kishan Dholakia Comparison of 2D melting criteria in a colloidal systemPatrick Dillmann, Georg Maret and Peter Keim Effects of confinement and external fields on structure and transport in colloidal dispersions in reduced dimensionalityD Wilms, S Deutschländer, U Siems, K Franzrahe, P Henseler, P Keim, N Schwierz, P Virnau, K Binder, G Maret and P Nielaba Stochastic transport of particles across single barriersChristian Kreuter, Ullrich Siems, Peter Henseler, Peter Nielaba, Paul Leiderer and Artur Erbe A perspective on the interfacial properties of nanoscopic liquid dropsAlexandr Malijevský and George Jackson Controlling the wetting properties of the Asakura-Oosawa model and applications to spherical confinementA Statt, A Winkler, P Virnau and K Binder Crystalline multilayers of charged colloids in soft confinement: experiment versus theoryE C Oğuz, A Reinmüller, H J Schöpe, T Palberg, R