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Sample records for jurassic sand erg

  1. Study physico-chemical of the sand of the western ERG (Western South Algeria)

    Energy Technology Data Exchange (ETDEWEB)

    Allam, M.; Tafraoui, A. [Faculty of sciences and technology, University of Bechar (Algeria)], email: allammessaouda@yahoo.fr

    2011-07-01

    Silica is gaining increasing importance as it is the base for the production of pure silicon, for which several applications are under development in the electronic and solar energy sectors. The aim of this study is to characterize the sand taken from the Western Erg of Algeria to determine the percentage of silicon it contains. Characterization was done through physical analysis to determine the granulometry of the sand. A chemical analysis was next performed, using diffraction of X-rays and a scanning electron microscope to determine the chemical composition of the sand. Results showed that the sand is mainly made of quartz in the form of rounded and subbarrondis grains and that silicon is prevalent, accounting for 98% of the composition. This study demonstrated that sand from the Western Erg of Algeria is rich in silicon and could be used for silicon production.

  2. Contrasting styles of large-scale displacement of unconsolidated sand: examples from the early Jurassic Navajo Sandstone on the Colorado Plateau, USA

    Science.gov (United States)

    Bryant, Gerald

    2015-04-01

    Large-scale soft-sediment deformation features in the Navajo Sandstone have been a topic of interest for nearly 40 years, ever since they were first explored as a criterion for discriminating between marine and continental processes in the depositional environment. For much of this time, evidence for large-scale sediment displacements was commonly attributed to processes of mass wasting. That is, gravity-driven movements of surficial sand. These slope failures were attributed to the inherent susceptibility of dune sand responding to environmental triggers such as earthquakes, floods, impacts, and the differential loading associated with dune topography. During the last decade, a new wave of research is focusing on the event significance of deformation features in more detail, revealing a broad diversity of large-scale deformation morphologies. This research has led to a better appreciation of subsurface dynamics in the early Jurassic deformation events recorded in the Navajo Sandstone, including the important role of intrastratal sediment flow. This report documents two illustrative examples of large-scale sediment displacements represented in extensive outcrops of the Navajo Sandstone along the Utah/Arizona border. Architectural relationships in these outcrops provide definitive constraints that enable the recognition of a large-scale sediment outflow, at one location, and an equally large-scale subsurface flow at the other. At both sites, evidence for associated processes of liquefaction appear at depths of at least 40 m below the original depositional surface, which is nearly an order of magnitude greater than has commonly been reported from modern settings. The surficial, mass flow feature displays attributes that are consistent with much smaller-scale sediment eruptions (sand volcanoes) that are often documented from modern earthquake zones, including the development of hydraulic pressure from localized, subsurface liquefaction and the subsequent escape of

  3. Middle Jurassic Topawa group, Baboquivari Mountains, south-central Arizona: Volcanic and sedimentary record of deep basins within the Jurassic magmatic arc

    Science.gov (United States)

    Haxel, G.B.; Wright, J.E.; Riggs, N.R.; Tosdal, R.M.; May, D.J.

    2005-01-01

    Among supracrustal sequences of the Jurassic magmatic arc of the southwestern Cordillera, the Middle Jurassic Topawa Group, Baboquivari Mountains, south-central Arizona, is remarkable for its lithologic diversity and substantial stratigraphic thickness, ???8 km. The Topawa Group comprises four units (in order of decreasing age): (1) Ali Molina Formation-largely pyroclastic rhyolite with interlayered eolian and fluvial arenite, and overlying conglomerate and sandstone; (2) Pitoikam Formation-conglomerate, sedimentary breccia, and sandstone overlain by interbedded silt- stone and sandstone; (3) Mulberry Wash Formation-rhyolite lava flows, flow breccias, and mass-flow breccias, with intercalated intraformational conglomerate, sedimentary breccia, and sandstone, plus sparse within-plate alkali basalt and comendite in the upper part; and (4) Tinaja Spring Porphyry-intrusive rhyolite. The Mulberry Wash alkali basalt and comendite are genetically unrelated to the dominant calcalkaline rhyolite. U-Pb isotopic analyses of zircon from volcanic and intrusive rocks indicate the Topawa Group, despite its considerable thickness, represents only several million years of Middle Jurassic time, between approximately 170 and 165 Ma. Sedimentary rocks of the Topawa Group record mixing of detritus from a minimum of three sources: a dominant local source of porphyritic silicic volcanic and subvolcanic rocks, identical or similar to those of the Topawa Group itself; Meso- proterozoic or Cambrian conglomerates in central or southeast Arizona, which contributed well-rounded, highly durable, polycyclic quartzite pebbles; and eolian sand fields, related to Middle Jurassic ergs that lay to the north of the magmatic arc and are now preserved on the Colorado Plateau. As the Topawa Group evidently represents only a relatively short interval of time, it does not record long-term evolution of the Jurassic magmatic arc, but rather represents a Middle Jurassic "stratigraphic snapshot" of the arc

  4. Aeolian sedimentation in the middle buntsandstein in the eifel north-south depression zone: Summary of the variability of sedimentary processes in a buntsandstein erg as a base for evaluation of the mutual relationships between aeolian sand seas and fluvial river systems in the mid-european buntsandstein

    Science.gov (United States)

    Mader, Detlef

    representing residual sand not having been incorporated into larger dunes of the surrounding sand sea. Damp interdune deposits originate by trapping of loose sand that is blown across a moist playa surface as adhesion ripples and warts. The adhesion structures form both in aeolian sheet sand environments with increasing moisture of the substrate and on fluvial channel bars and stream bottoms with declining dampness during subaerial exposure. Wet interdune deposits originate by settling of suspension fines in periodic shallow lakes between the dunes following heavy ephemeral rainfall or forming by rising ground water table, and by aquatic redeposition of aeolian sand due to washout after atmospheric precipitation and alluvial invasion. Deflationary interdune deposits form by winnowing of the sandy matrix from fluvial sheet or bar conglomerates thereby leaving the dispersed gravel as more or less tightly-packed residual veneer on the degradation surface providing bed armour against further aeolian or aquatic erosion. Aeolian deposition is at the top of the Middle Buntsandstein rather rapidly terminated by fluvial inundation of the erg, erosion and partial resedimentation of dune sands and burial of the more or less degraded aeolian bedforms under a carpet of alluvial deposits. At the beginning of the Upper Buntsandstein, a change to semi-arid climate results in stabilization of emerging overbank plains and channels by palaeosol formation and plant growth thus completely inhibiting further accumulation of aeolian sands. The range of modes of origin of dune sands and interdune deposits, the spatial and temporal variability of their accumulation and preservation and the distribution of water-laid intercalations provide a base for independent evaluation of the dynamics of the aeolian system and its controls as well as for comparative assessment of the behaviour of the aeolian environment and the fluvial milieu in a system of intertonguing sand sea and river belt and of the

  5. Jurassic Amber in Lebanon

    Institute of Scientific and Technical Information of China (English)

    Dany AZAR; Raymond G(E)ZE; Antoine EL-SAMRANI; Jacqueline MAALOULY; André NEL

    2010-01-01

    Reports of amber predating the Lower Cretaceous are unusual and scarce; they mostly refer to amber pieces of millimetric dimension.In the present study,we report the discovery of 10 new outcrops of Jurassic amber in Lebanon.Some of these had large centimetric-sized pieces of amber.The new localities are described,amber is characterized,and its infrared spectra given.Although the new Jurassic amber yielded to date no more than fungal inclusions,this material is significant and promising.The discovery of several Jurassic outcrops provides crucial information on the prevailing paleoenvironment of that time.

  6. Analysis list: ERG [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available ERG Blood,Breast,Prostate + hg19 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/target/ERG.1.tsv http:...//dbarchive.biosciencedbc.jp/kyushu-u/hg19/target/ERG.5.tsv http://dbarchive.bioscienced...bc.jp/kyushu-u/hg19/target/ERG.10.tsv http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/colo/ERG.Blood.tsv,http:...//dbarchive.biosciencedbc.jp/kyushu-u/hg19/colo/ERG.Breast.tsv,http://dbarchive....biosciencedbc.jp/kyushu-u/hg19/colo/ERG.Prostate.tsv http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/colo/Blood.gml,http:

  7. ERG protein expression over time

    DEFF Research Database (Denmark)

    Berg, Kasper Drimer; Brasso, Klaus; Thomsen, Frederik Birkebæk;

    2015-01-01

    by immunohistochemistry (IHC) in 625 biopsy sets and 86 radical prostatectomy specimens from 265 patients with prostate cancer managed on active surveillance. For IHC, a rabbit monoclonal primary antibody was used (clone: EPR3864). TMPRSS2-ERG fluorescence in situ hybridisation (FISH) analyses were performed in 74...

  8. Jurassic fishes of Gondwana

    Directory of Open Access Journals (Sweden)

    Adriana López-Arbarello

    2008-12-01

    Full Text Available The Jurassic is an important period for understanding the origin of modern fish faunas, since it saw the first radiation - and in some cases the origin - of most modern groups. In chondrichthyans, neoselachian sharks and rays diversified during this time. In actinopterygians, the neopterygians, and among them the teleosts, experienced an important radiation, which led to the appearance of several of the modern teleosts groups. In the sarcopterygians, dipnoans and actinistians approached their current forms. However, the Jurassic fossil record of fishes is strongly biased towards the Northern Hemisphere. The only notable Early Jurassic fish fauna from Gondwana is that of the Kota Formation of India. For the Middle Jurassic, the most important Gondwanan fish faunas are those of the Aalenian-Bathonian Stanleyville Beds of the Democratic Republic of Congo, in which a distinct freshwater and a marine fauna are found. In the Late Jurassic, the Gondwanan record is slightly better, with important marine faunas being known from the Oxfordian Quebrada del Profeta in Chile and the Tithonian Vaca Muerta Formation of Argentina. Freshwater faunas have been described from the Tithonian Talbragar Beds of eastern Australia and the Tithonian Cañadón Calcáreo Formation of Argentina. The taxonomic composition of the known marine actinopterygian faunas of Gondwana is in general agreement with faunas of the Northern Hemisphere. However, the Jurassic fish record from Gondwana is highly incomplete both stratigraphically and geographically, and most faunas are in need of revision, further hampering an interpretation of Jurassic fish evolution in the Southern Hemisphere.

  9. Analysis list: Erg [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Erg Blood,Prostate + mm9 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/target/Erg.1.tsv http:...//dbarchive.biosciencedbc.jp/kyushu-u/mm9/target/Erg.5.tsv http://dbarchive.biosciencedbc.jp/kyus...hu-u/mm9/target/Erg.10.tsv http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/colo/Erg.Blood.tsv,http://dbarchiv...e.biosciencedbc.jp/kyushu-u/mm9/colo/Erg.Prostate.tsv http://dbarchive.bioscience...dbc.jp/kyushu-u/mm9/colo/Blood.gml,http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/colo/Prostate.gml ...

  10. Exploring Jurassic Park.

    Science.gov (United States)

    Simmons, Patricia E.; Wiley, Clyde

    1993-01-01

    Describes several student-tested activities built around "Jurassic Park." The activities feature students engaged in role-playing scenarios, investigative research projects, journal writing and communications skills activities, cooperative learning groups, and learning experiences that make use of reading skills and mathematical knowledge. (PR)

  11. Exploring Jurassic Park.

    Science.gov (United States)

    Simmons, Patricia E.; Wiley, Clyde

    1993-01-01

    Describes several student-tested activities built around "Jurassic Park." The activities feature students engaged in role-playing scenarios, investigative research projects, journal writing and communications skills activities, cooperative learning groups, and learning experiences that make use of reading skills and mathematical knowledge. (PR)

  12. Heterogeneity of ERG expression in prostate cancer

    DEFF Research Database (Denmark)

    Tsourlakis, Maria-Christina; Stender, Annegret; Quaas, Alexander

    2016-01-01

    BACKGROUND: TMPRSS2:ERG fusions are frequent in prostate cancer, and occur predominantly in young patients. Several studies had proposed intratumoral heterogeneity of these fusions. This study was designed to determine frequency and extent of ERG fusion heterogeneity in early-onset prostate cancer...... (EO-PCA, prostates from 63 EO-PCA and 62 elderly prostate cancer patients were thoroughly reviewed for presence of cancer foci. All 1592 tumor-containing sections were analyzed by immunohistochemistry for ERG expression. RESULTS: The prostates included...... that about 20-30 % of prostate cancer foci have early ERG fusions. ERG fusions further occur in about 50 % of initially ERG negative cancer foci during cancer progression. The vast majority of cancers are heterogeneous for TMPRSS2:ERG fusions on a patient level, challenging the concept of classifying...

  13. Expression of ERG Protein and TMRPSS2-ERG Fusion in Prostatic Carcinoma in Egyptian Patients

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    Ahmed Abdel-Hady

    2017-03-01

    CONCLUSION: Our findings emphasise that only malignant and pre-malignant cells and not benign cells from the prostate stain positive. ERG expression may offer a simpler, accurate and less costly alternative for evaluation of ERG fusion status in PCa.

  14. Targeting TMPRSS2-ERG in Prostate Cancer

    Science.gov (United States)

    2015-09-01

    ERG function. 2) Specific objectives • Screen bioactive library by high throughput gene expression profiling to find compounds that modulate ERG...assembled library of approximately 1800 bioactive drugs consisting of commercially available compounds , FDA approved drugs, and drugs in clinical trials, to...identified from genome wide kinase suppression screen (months 1-18) 2a. Identify and collect compounds that inhibit candidate kinases identified from

  15. ABNORMALITIES OF ERG IN CONGENITAL ANIRIDIA

    Institute of Scientific and Technical Information of China (English)

    1991-01-01

    Congenital aniridia is generally associated with nystagmus, corneal pannus, cataract, ectopia lentis, glaucoma, macular hypoplasia, optic nerve hypoplasia and compromised visual function. Many theories have been proposed, including a failure in the development of the neural ectoderm and/or an aberrant development of mesoderm. We observed the ERG from 19 patients with congenital aniridia. Fourteen patients had abnormal ERG, including the reduced a wave trough under dark adapted red stimuli with dark adap...

  16. Jurassic Park: Adventure in Learning.

    Science.gov (United States)

    Shams, Marcia; Boteler, Trina

    1993-01-01

    Describes using the movie "Jurassic Park" as a foundation for a middle school interdisciplinary unit involving science, math, language arts, history, and geography. Suggested books and activities are presented. (PR)

  17. Jurassic Park: Adventure in Learning.

    Science.gov (United States)

    Shams, Marcia; Boteler, Trina

    1993-01-01

    Describes using the movie "Jurassic Park" as a foundation for a middle school interdisciplinary unit involving science, math, language arts, history, and geography. Suggested books and activities are presented. (PR)

  18. Architecture of an Upper Jurassic barrier island sandstone reservoir, Danish Central Graben:

    DEFF Research Database (Denmark)

    Johannessen, Peter N.; Nielsen, Lars H.; Nielsen, Lars

    2010-01-01

    An unusually thick (c. 88 m), transgressive barrier island and shoreface sandstone succession characterizes the Upper Jurassic Heno Formation reservoir of the Freja oil field situated on the boundary of Denmark and Norway. The development and preservation of such thick transgressive barrier islan...... such that the island aggraded and even prograded seawards and became wider and longer due to the large surplus of sand....

  19. hERG Blockade by Iboga Alkaloids.

    Science.gov (United States)

    Alper, Kenneth; Bai, Rong; Liu, Nian; Fowler, Steven J; Huang, Xi-Ping; Priori, Silvia G; Ruan, Yanfei

    2016-01-01

    The iboga alkaloids are a class of naturally occurring and synthetic compounds, some of which modify drug self-administration and withdrawal in humans and preclinical models. Ibogaine, the prototypic iboga alkaloid that is utilized clinically to treat addictions, has been associated with QT prolongation, torsades de pointes and fatalities. hERG blockade as IKr was measured using the whole-cell patch clamp technique in HEK 293 cells. This yielded the following IC50 values: ibogaine manufactured by semisynthesis via voacangine (4.09 ± 0.69 µM) or by extraction from T. iboga (3.53 ± 0.16 µM); ibogaine's principal metabolite noribogaine (2.86 ± 0.68 µM); and voacangine (2.25 ± 0.34 µM). In contrast, the IC50 of 18-methoxycoronaridine, a product of rational synthesis and current focus of drug development was >50 µM. hERG blockade was voltage dependent for all of the compounds, consistent with low-affinity blockade. hERG channel binding affinities (K i) for the entire set of compounds, including 18-MC, ranged from 0.71 to 3.89 µM, suggesting that 18-MC binds to the hERG channel with affinity similar to the other compounds, but the interaction produces substantially less hERG blockade. In view of the extended half-life of noribogaine, these results may relate to observations of persistent QT prolongation and cardiac arrhythmia at delayed intervals of days following ibogaine ingestion. The apparent structure-activity relationships regarding positions of substitutions on the ibogamine skeleton suggest that the iboga alkaloids might provide an informative paradigm for investigation of the structural biology of the hERG channel.

  20. Fontainebleau Sand

    DEFF Research Database (Denmark)

    Leth, Caspar Thrane

    2006-01-01

    The report is a summary of results from laboratory tests in the geotechncial research group on Fontainebleau sand.......The report is a summary of results from laboratory tests in the geotechncial research group on Fontainebleau sand....

  1. Targeting TMPRSS2-ERG in Prostate Cancer

    Science.gov (United States)

    2014-09-01

    in prostate cancer cells. We will complete validation candidate kinases that modulate the ERG signature using shRNA and new CRISPR technology as an...will plan to validate hits using CRISPR -Cas9 technology as an orthogonal system. The CRISPR -Cas9 system was not available at the time of the

  2. Thermal behavior and ice-table depth within the north polar erg of Mars

    Science.gov (United States)

    Putzig, Nathaniel E.; Mellon, Michael T.; Herkenhoff, Kenneth E.; Phillips, Roger J.; Davis, Brian J.; Ewer, Kenneth J.; Bowers, Lauren M.

    2014-01-01

    We fully resolve a long-standing thermal discrepancy concerning the north polar erg of Mars. Several recent studies have shown that the erg’s thermal properties are consistent with normal basaltic sand overlying shallow ground ice or ice-cemented sand. Our findings bolster that conclusion by thoroughly characterizing the thermal behavior of the erg, demonstrating that other likely forms of physical heterogeneity play only a minor role, and obviating the need to invoke exotic materials. Thermal inertia as calculated from orbital temperature observations of the dunes has previously been found to be more consistent with dust-sized materials than with sand. Since theory and laboratory data show that dunes will only form out of sand-sized particles, exotic sand-sized agglomerations of dust have been invoked to explain the low values of thermal inertia. However, the polar dunes exhibit the same darker appearance and color as that of dunes found elsewhere on the planet that have thermal inertia consistent with normal sand-sized basaltic grains, whereas Martian dust deposits are generally lighter and redder. The alternative explanation for the discrepancy as a thermal effect of a shallow ice table is supported by our analysis of observations from the Mars Global Surveyor Thermal Emission Spectrometer and the Mars Odyssey Thermal Emission Imaging System and by forward modeling of physical heterogeneity. In addition, our results exclude a uniform composition of dark dust-sized materials, and they show that the thermal effects of the dune slopes and bright interdune materials evident in high-resolution images cannot account for the erg’s thermal behavior.

  3. The Jurassic of Denmark and Greenland: Shallow marine syn-rift sedimentation: Middle Jurassic Pelion Formation, Jameson Land, East Greenland

    Directory of Open Access Journals (Sweden)

    Engkilde, Michael

    2003-10-01

    Full Text Available The Middle Jurassic Pelion Formation – Fossilbjerget Formation couplet of Jameson Land, East Greenland, is a well-exposed example of the Middle Jurassic inshore–offshore successions characteristicof the rifted seaways in the Northwest European – North Atlantic region. Early Jurassic deposition took place under relatively quiet tectonic conditions following Late Permian – earliest Triassic and Early Triassic rift phases and the Lower Jurassic stratal package shows an overall layer-cake geometry. A long-term extensional phase was initiated in Middle Jurassic (Late Bajocian time, culminated in the Late Jurassic (Kimmeridgian–Volgian, and petered out in the earliest Cretaceous (Valanginian. The Upper Bajocian – Middle Callovian early-rift succession comprises shallow marine sandstones of the Pelion Formation and correlative offshore siltstones of theFossilbjerget Formation. Deposition was initiated by southwards progradation of shallow marine sands of the Pelion Formation in the Late Bajocian followed by major backstepping in Bathonian–Callovian times and drowning of the sandy depositional system in the Middle–Late Callovian. Six facies associations are recognised in the Pelion–Fossilbjerget couplet, representing estuarine, shoreface, offshore transition zone and offshore environments. The north–southtrendingaxis of the Jameson Land Basin had a low inclination, and deposition was sensitive to even small changes in relative sea level which caused the shorelines to advance or retreat over tens to several hundreds of kilometres. Eight composite sequences, termed P1–P8, are recognised and are subdivided into a total of 28 depositional sequences. The duration of the two orders of sequences was about 1–2 Ma and 360,000 years, respectively. The Upper Bajocian P1–2 sequencesinclude the most basinally positioned shallow marine sandstones, deposited during major sealevel lowstands. The lowstands were terminated by significant marine

  4. Modulation of ERG channels by XE991

    DEFF Research Database (Denmark)

    Elmedyb, Pernille; Calloe, Kirstine; Schmitt, Nicole

    2007-01-01

    In neuronal tissue, KCNQ2-5 channels conduct the physiologically important M-current. In some neurones, the M-current may in addition be conducted partly by ERG potassium channels, which have widely overlapping expression with the KCNQ channel subunits. XE991 and linopiridine are known to be stan...... care should be taken when choosing the concentration of XE991 to use for experiments on native potassium channels or animal studies in order to be able to conclude on selective KCNQ channel-mediated effects....

  5. Dynamics of hERG closure allow novel insights into hERG blocking by small molecules.

    Science.gov (United States)

    Schmidtke, Peter; Ciantar, Marine; Theret, Isabelle; Ducrot, Pierre

    2014-08-25

    Today, drug discovery routinely uses experimental assays to determine very early if a lead compound can yield certain types of off-target activity. Among such off targets is hERG. The ion channel plays a primordial role in membrane repolarization and altering its activity can cause severe heart arrhythmia and sudden death. Despite routine tests for hERG activity, rather little information is available for helping medicinal chemists and molecular modelers to rationally circumvent hERG activity. In this article novel insights into the dynamics of hERG channel closure are described. Notably, helical pairwise closure movements have been observed. Implications and relations to hERG inactivation are presented. Based on these dynamics novel insights on hERG blocker placement are presented, compared to literature, and discussed. Last, new evidence for horizontal ligand positioning is shown in light of former studies on hERG blockers.

  6. ENVIRONMENTS AND FAUNAL PATTERNS IN THE KACHCHH RIFT BASIN, WESTERN INDIA, DURING THE JURASSIC

    OpenAIRE

    FRANZ THEODOR FÜRSICH; Callomon, John H.; DHIRENDRA K. PANDEY; ANAND K. JAITLY

    2004-01-01

    Marine Jurassic sediments (Bajocian-Tithonian) of the Kachchh Basin were deposited in a ramp setting. Except during the Middle and Late Bathonian, when a carbonate regime became established, the fill of the basin consists predominantly of siliciclastics. The sediments represent environments that range from coastal plains (rivers and associated flood plains with caliche nodules), deltas, brackish water lagoons, nearshore sand and iron-oolite bars of the inner ramp, generally situated above fai...

  7. ERG induces epigenetic activation of Tudor domain-containing protein 1 (TDRD1 in ERG rearrangement-positive prostate cancer.

    Directory of Open Access Journals (Sweden)

    Lukasz A Kacprzyk

    Full Text Available BACKGROUND: Overexpression of ERG transcription factor due to genomic ERG-rearrangements defines a separate molecular subtype of prostate tumors. One of the consequences of ERG accumulation is modulation of the cell's gene expression profile. Tudor domain-containing protein 1 gene (TDRD1 was reported to be differentially expressed between TMPRSS2:ERG-negative and TMPRSS2:ERG-positive prostate cancer. The aim of our study was to provide a mechanistic explanation for the transcriptional activation of TDRD1 in ERG rearrangement-positive prostate tumors. METHODOLOGY/PRINCIPAL FINDINGS: Gene expression measurements by real-time quantitative PCR revealed a remarkable co-expression of TDRD1 and ERG (r(2 = 0.77 but not ETV1 (r(2<0.01 in human prostate cancer in vivo. DNA methylation analysis by MeDIP-Seq and bisulfite sequencing showed that TDRD1 expression is inversely correlated with DNA methylation at the TDRD1 promoter in vitro and in vivo (ρ = -0.57. Accordingly, demethylation of the TDRD1 promoter in TMPRSS2:ERG-negative prostate cancer cells by DNA methyltransferase inhibitors resulted in TDRD1 induction. By manipulation of ERG dosage through gene silencing and forced expression we show that ERG governs loss of DNA methylation at the TDRD1 promoter-associated CpG island, leading to TDRD1 overexpression. CONCLUSIONS/SIGNIFICANCE: We demonstrate that ERG is capable of disrupting a tissue-specific DNA methylation pattern at the TDRD1 promoter. As a result, TDRD1 becomes transcriptionally activated in TMPRSS2:ERG-positive prostate cancer. Given the prevalence of ERG fusions, TDRD1 overexpression is a common alteration in human prostate cancer which may be exploited for diagnostic or therapeutic procedures.

  8. Erg cooperates with TGF-β to control mesenchymal differentiation.

    Science.gov (United States)

    Cox, Megan K; Appelboom, Brittany L; Ban, Ga I; Serra, Rosa

    2014-11-01

    Transforming growth factor β (TGF-β) signaling plays an integral role in skeletal development. Conditional deletion of the TGF-β type II receptor (Tgfbr2) from type II Collagen (Col2a) expressing cells results in defects in development of the annulus fibrosus (AF) of the intervertebral disc (IVD). We previously used microarray analysis to search for marker genes of AF as well as transcription factors regulated by TGF-β during AF development. The transcription factor avian erythroblastosis virus E-26 (v-ets) oncogene related (Erg) was identified in the microarray screen as a candidate regulator of AF development. To study the effects of TGF-β on AF differentiation and the role of Erg in this process, we used mouse sclerotome grown in micromass cultures. At 0.5ng TGF-β/ml, sclerotome cells started to express markers of AF. Regulation of Erg by TGF-β was confirmed in these cells. In addition, TGF-β soaked Affi-gel beads implanted into the axial skeleton of stage HH 25 chick embryos showed that TGF-β could induce expression of Erg mRNA in vivo. Next, an adenovirus to over-express Erg in primary sclerotome micromass cultures was generated. Over-expression of Erg led to a change in cell morphology and inhibition of differentiation into hyaline cartilage as seen by reduced Alcian blue staining and decreased Sox9 and c-Maf expression. Erg was not sufficient to induce expression of AF markers and expression of Sca1, a marker of pluripotent progenitor cells, was up-regulated in Erg expressing cells. When cells that ectopically expressed Erg were treated with TGF-β, enhanced expression of specific differentiation markers was observed suggesting Erg can cooperate with TGF-β to regulate differentiation of the sclerotome. Furthermore, we showed using co-immunopreciptiation that Erg and Smad3 bind to each other suggesting a mechanism for their functional interaction.

  9. The multifocal electroretinogram (mfERG) in the pig

    DEFF Research Database (Denmark)

    Voss Kyhn, Maria; Kiilgaard, Jens Folke; Lopez, Ana Garcia;

    2007-01-01

    To establish a method allowing multifocal electroretinography (mfERG) recording with simultaneous fundus monitoring on anaesthetized pigs. In addition we characterize the peaks of the porcine mfERG trace, and compare the visual streak area with the optic nerve head, a known non-response area...

  10. Analyses of ERG in a patient with intraocular lymphoma

    Directory of Open Access Journals (Sweden)

    Chieko Yasuda

    2010-04-01

    Full Text Available Chieko Yasuda, Shinji Ueno, Mineo Kondo, Nagako Kondo, Chang-Hua Piao, Hiroko TerasakiDepartment of Ophthalmology, Nagoya University School of Medicine, Nagoya, JapanPurpose: To follow the changes in the electroretinograms (ERGs in a patient with primary intraocular lymphoma (PIOL who had a complete remission after chemotherapy. Methods: ERGs were recorded in a 41-year-old woman with PIOL during and after complete remission with chemotherapy. The patient was diagnosed with PIOL from both the ocular signs and the medical history of cranial lymphoma.Results: The ERGs were depressed in the subject. The amplitudes of the bright white flash b-waves were smaller than the a-waves, resulting in a “negative type” ERG. Six weeks after the beginning of chemotherapy, the ocular changes had resolved, and the ERGs, although not of the “negative type”, still showed signs that the amplitude had not returned to normal levels.Conclusion: The negative type ERGs indicated that the inner retina had been damaged to a greater extent than the outer retina. In the convalescent stage, when the ocular manifestations were resolved, the ERGs were still not fully recovered. Although only one case was studied, we suggest that ERGs can be used to evaluate and follow patients with a PIOL.Keywords: electroretinogram, primary intraocular lymphoma, uveitis masquerade syndrome

  11. The multifocal electroretinogram (mfERG) in the pig

    DEFF Research Database (Denmark)

    Voss Kyhn, Maria; Kiilgaard, Jens Folke; Lopez, Ana Garcia

    2007-01-01

    To establish a method allowing multifocal electroretinography (mfERG) recording with simultaneous fundus monitoring on anaesthetized pigs. In addition we characterize the peaks of the porcine mfERG trace, and compare the visual streak area with the optic nerve head, a known non-response area. Fin...

  12. Mechanisms underlying probucol-induced hERG-channel deficiency

    Directory of Open Access Journals (Sweden)

    Shi YQ

    2015-07-01

    Full Text Available Yuan-Qi Shi,1,* Cai-Chuan Yan,1,* Xiao Zhang,1 Meng Yan,1 Li-Rong Liu,1 Huai-Ze Geng,1 Lin Lv,1 Bao-Xin Li1,21Department of Pharmacology, Harbin Medical University, 2State-Province Key Laboratory of Biopharmaceutical Engineering, Harbin, Heilongjiang, People’s Republic of China*These authors contributed equally to this workAbstract: The hERG gene encodes the pore-forming α-subunit of the rapidly activating delayed rectifier potassium channel (IKr, which is important for cardiac repolarization. Reduction of IhERG due to genetic mutations or drug interferences causes long QT syndrome, leading to life-threatening cardiac arrhythmias (torsades de pointes or sudden death. Probucol is a cholesterol-lowering drug that could reduce hERG current by decreasing plasma membrane hERG protein expression and eventually cause long QT syndrome. Here, we investigated the mechanisms of probucol effects on IhERG and hERG-channel expression. Our data demonstrated that probucol reduces SGK1 expression, known as SGK isoform, in a concentration-dependent manner, resulting in downregulation of phosphorylated E3 ubiquitin ligase Nedd4-2 expression, but not the total level of Nedd4-2. As a result, the hERG protein reduces, due to the enhanced ubiquitination level. On the contrary, carbachol could enhance the phosphorylation level of Nedd4-2 as an alternative to SGK1, and thus rescue the ubiquitin-mediated degradation of hERG channels caused by probucol. These discoveries provide a novel mechanism of probucol-induced hERG-channel deficiency, and imply that carbachol or its analog may serve as potential therapeutic compounds for the handling of probucol cardiotoxicity.Keywords: long QT, hERG potassium channels, probucol, SGK1, Nedd4-2

  13. Escitalopram block of hERG potassium channels.

    Science.gov (United States)

    Chae, Yun Ju; Jeon, Ji Hyun; Lee, Hong Joon; Kim, In-Beom; Choi, Jin-Sung; Sung, Ki-Wug; Hahn, Sang June

    2014-01-01

    Escitalopram, a selective serotonin reuptake inhibitor, is the pharmacologically active S-enantiomer of the racemic mixture of RS-citalopram and is widely used in the treatment of depression. The effects of escitalopram and citalopram on the human ether-a-go-go-related gene (hERG) channels expressed in human embryonic kidney cells were investigated using voltage-clamp and Western blot analyses. Both drugs blocked hERG currents in a concentration-dependent manner with an IC50 value of 2.6 μM for escitalopram and an IC50 value of 3.2 μM for citalopram. The blocking of hERG by escitalopram was voltage-dependent, with a steep increase across the voltage range of channel activation. However, voltage independence was observed over the full range of activation. The blocking by escitalopram was frequency dependent. A rapid application of escitalopram induced a rapid and reversible blocking of the tail current of hERG. The extent of the blocking by escitalopram during the depolarizing pulse was less than that during the repolarizing pulse, suggesting that escitalopram has a high affinity for the open state of the hERG channel, with a relatively lower affinity for the inactivated state. Both escitalopram and citalopram produced a reduction of hERG channel protein trafficking to the plasma membrane but did not affect the short-term internalization of the hERG channel. These results suggest that escitalopram blocked hERG currents at a supratherapeutic concentration and that it did so by preferentially binding to both the open and the inactivated states of the channels and by inhibiting the trafficking of hERG channel protein to the plasma membrane.

  14. Indexing molecules for their hERG liability.

    Science.gov (United States)

    Rayan, Anwar; Falah, Mizied; Raiyn, Jamal; Da'adoosh, Beny; Kadan, Sleman; Zaid, Hilal; Goldblum, Amiram

    2013-07-01

    The human Ether-a-go-go-Related-Gene (hERG) potassium (K(+)) channel is liable to drug-inducing blockage that prolongs the QT interval of the cardiac action potential, triggers arrhythmia and possibly causes sudden cardiac death. Early prediction of drug liability to hERG K(+) channel is therefore highly important and preferably obligatory at earlier stages of any drug discovery process. In vitro assessment of drug binding affinity to hERG K(+) channel involves substantial expenses, time, and labor; and therefore computational models for predicting liabilities of drug candidates for hERG toxicity is of much importance. In the present study, we apply the Iterative Stochastic Elimination (ISE) algorithm to construct a large number of rule-based models (filters) and exploit their combination for developing the concept of hERG Toxicity Index (ETI). ETI estimates the molecular risk to be a blocker of hERG potassium channel. The area under the curve (AUC) of the attained model is 0.94. The averaged ETI of hERG binders, drugs from CMC, clinical-MDDR, endogenous molecules, ACD and ZINC, were found to be 9.17, 2.53, 3.3, -1.98, -2.49 and -3.86 respectively. Applying the proposed hERG Toxicity Index Model on external test set composed of more than 1300 hERG blockers picked from chEMBL shows excellent performance (Matthews Correlation Coefficient of 0.89). The proposed strategy could be implemented for the evaluation of chemicals in the hit/lead optimization stages of the drug discovery process, improve the selection of drug candidates as well as the development of safe pharmaceutical products.

  15. Oxfordian-Kimmeridgian (Late Jurassic) reservoir sandstones in the Witch Ground Graben, U. K. North Sea

    Energy Technology Data Exchange (ETDEWEB)

    Harker, S.D. (Occidental Petroleum (Caledonia) Ltd., Aberdeen (United Kingdom)); Mantel, K.A. (Narwhal, London (United Kingdom)); Morton, D.J. (Deminex U.K. Oil and Gas Ltd., London (United Kingdom)); Riley, L.A. (Paleoservices, Watford (United Kingdom))

    1991-03-01

    Oil-bearing Late Jurassic Oxfordian-Kimmeridgian sandstones of the Sgiath and Piper formations are of major economic importance in the Witch Ground Graben. They form the reservoirs in Scott, which in 1993 will be the largest producing North Sea oil field to come on stream for more than a decade. Together with Scott, the Piper, Saltire, Tartan, Highlander, Petronella, Rob Roy, and Ivanhoe fields contained almost 2 Bbbl of recoverable reserves in these formations. The Sgiath and Piper represent two phases of Late Jurassic transgression and regression, initially represented by paralic deposited sand culminating in a wave-dominated delta sequence. The history of the Sgiath and Piper formations is reviewed and lithostratigraphic and biostratigraphic correlations presented to illustrate the distribution of the reservoir sandstones.

  16. Tectonic Evolution of the Jurassic Pacific Plate

    Science.gov (United States)

    Nakanishi, M.; Ishihara, T.

    2015-12-01

    We present the tectonic evolution of the Jurassic Pacific plate based on magnetic anomly lineations and abyssal hills. The Pacific plate is the largest oceanic plate on Earth. It was born as a microplate aroud the Izanagi-Farallon-Phoenix triple junction about 192 Ma, Early Jurassic [Nakanishi et al., 1992]. The size of the Pacific plate at 190 Ma was nearly half that of the present Easter or Juan Fernandez microplates in the East Pacific Rise [Martinez et at, 1991; Larson et al., 1992]. The plate boundary surrounding the Pacific plate from Early Jurassic to Early Cretaceous involved the four triple junctions among Pacific, Izanagi, Farallon, and Phoenix plates. The major tectonic events as the formation of oceanic plateaus and microplates during the period occurred in the vicinity of the triple junctions [e.g., Nakanishi and Winterer, 1998; Nakanishi et al., 1999], implying that the study of the triple junctions is indispensable for understanding the tectonic evolution of the Pacific plate. Previous studies indicate instability of the configuration of the triple junctions from Late Jurassic to Early Cretaceous (155-125 Ma). On the other hand, the age of the birth of the Pacific plate was determined assuming that all triple junctions had kept their configurations for about 30 m.y. [Nakanishi et al., 1992] because of insufficient information of the tectonic history of the Pacific plate before Late Jurassic.Increase in the bathymetric and geomagnetic data over the past two decades enables us to reveal the tectonic evolution of the Pacific-Izanagi-Farallon triple junction before Late Jurassic. Our detailed identication of magnetic anomaly lineations exposes magnetic bights before anomaly M25. We found the curved abyssal hills originated near the triple junction, which trend is parallel to magnetic anomaly lineations. These results imply that the configuration of the Pacific-Izanagi-Farallon triple junction had been RRR before Late Jurassic.

  17. The Role ERG and CXCR4 in Prostate Cancer Progression

    Science.gov (United States)

    2011-06-01

    progression to carcinoma (9, 10). TMPRSS2-ERG translocations have also been identified in the low grade PIN lesions adjacent to cancer suggesting that...grade PIN lesions adjacent to cancer, suggesting that ERG expression contributes to PIN development [11]. Further, two recent Address all...metastasis and growth in osseous sites in vivo. J Bone Miner Res 20, 318–329. [26] Murakami K, Mavrothalassitis G, Bhat NK, Fisher RJ, and Papas TS (1993

  18. Sands styrke

    DEFF Research Database (Denmark)

    Jacobsen, H. Moust; Jørgensen, Mogens B.; Poulsen, H. Serup

    1975-01-01

    På grundlag af triaxialforsøg med D=7 og 20 cm og varierende højde på løse og faste lejringer af Blokhussand kan effekten af varierende højde-breddeforhold og spændingsniveau samt skalaeffekten bestemmes. Ved sammenligning med pladeforsøg med overfladelast op til 8 t/m2 kan den almindelige fremga...... fremgangsmåde ved bæreevneberegninger på sand undersøges....

  19. ERG expression in multiple myeloma-A potential diagnostic pitfall.

    Science.gov (United States)

    Knief, Juliana; Reddemann, Katharina; Gliemroth, Jan; Brede, Swantje; Bartscht, Tobias; Thorns, Christoph

    2017-02-01

    ERG expression has been described as a frequent event in prostate cancer indicating poor prognosis and promoting oncogenesis. It has also been demonstrated in Ewing's sarcoma, acute myeloid leukemia and acute T-lymphoblastic leukemia but could not be found in other epithelial tumors, Hodgkin's or Non-Hodgkin's lymphoma. We aimed to analyze ERG expression in multiple myeloma, following an index case of a patient with metastases of unknown origin in the spine strongly expressing ERG, which were thought to be of prostatic origin but turned out to be plasmacytic lesions. We subsequently selected 12 formalin-fixed, paraffin-embedded tissue samples of multiple myeloma from our archives and performed immunohistochemical staining for ERG. All 12 analyzed cases showed strong nuclear expression of ERG in >90% of tumor cells (myeloma cells). This report highlights a potential and critical diagnostic pitfall in biopsy specimens where morphology is only of limited assistance in reaching the correct diagnosis. It urges pathologists to exercise caution in cases where strong ERG-positivity implicates the presence of a prostatic neoplasia and illustrates the need for further immunohistochemical examination. Copyright © 2016 Elsevier GmbH. All rights reserved.

  20. THE TMPRSS2:ERG REARRANGEMENT, ERG EXPRESSION, AND PROSTATE CANCER OUTCOMES: A COHORT STUDY AND META-ANALYSIS

    Science.gov (United States)

    Pettersson, Andreas; Graff, Rebecca E.; Bauer, Scott R.; Pitt, Michael; Lis, Rosina T.; Stack, Edward C.; Martin, Neil E.; Kunz, Lauren; Penney, Kathryn L.; Ligon, Azra H.; Suppan, Catherine; Flavin, Richard; Sesso, Howard D.; Rider, Jennifer R.; Sweeney, Christopher; Stampfer, Meir; Fiorentino, Michelangelo; Kantoff, Philip W.; Sanda, Martin; Giovannucci, Edward; Ding, Eric L.; Loda, Massimo; Mucci, Lorelei A.

    2013-01-01

    Background Whether the genomic rearrangement TMPRSS2:ERG has prognostic value in prostate cancer is unclear. Methods Among men with prostate cancer in the prospective Physicians’ Health and Health Professionals Follow-Up Studies, we identified rearrangement status by immunohistochemical assessment of ERG protein expression. We used Cox models to examine associations of ERG overexpression with biochemical recurrence and lethal disease (distant metastases or cancer-specific mortality). In a meta-analysis including 47 additional studies, we used random effects models to estimate associations between rearrangement status and outcomes. Results The cohort consisted of 1,180 men treated with radical prostatectomy between 1983 and 2005. During a median follow-up of 12.6 years, 266 men experienced recurrence, and 85 men developed lethal disease. We found no significant association between ERG overexpression and biochemical recurrence (HR: 0.99; 95% CI: 0.78-1.26) or lethal disease (HR: 0.93; 95% CI: 0.61-1.43). The meta-analysis of prostatectomy series included 5,074 men followed for biochemical recurrence (1,623 events), and 2,049 men followed for lethal disease (131 events). TMPRSS2:ERG was associated with stage at diagnosis (RR≥T3 vs. T2: 1.23; 95% CI: 1.16-1.30) but not with biochemical recurrence (RR: 1.00; 95% CI: 0.86-1.17) or lethal disease (RR: 0.99; 95% CI: 0.47-2.09). Conclusions These results suggest that TMPRSS2:ERG, or ERG overexpression, is associated with tumor stage but does not strongly predict recurrence or mortality among men treated with radical prostatectomy. Impact This is the largest prospective cohort study to examine associations of ERG overexpression and lethal prostate cancer among men treated with radical prostatectomy. PMID:22736790

  1. Tar sand

    Energy Technology Data Exchange (ETDEWEB)

    McLendon, T.R.; Bartke, T.C.

    1990-01-01

    Research on tar sand is briefly discussed. The research program supported by the US Department of Energy (DOE) includes a variety of surface extraction schemes. The University of Utah has process development units (PDU) employing fluidized bed, hot, water-assisted, and fluidized-bed/heat-pipe, coupled combustor technology. Considerable process variable test data have been gathered on these systems: (1) a rotary kiln unit has been built recently; (2) solvent extraction processing is being examined; and (3) an advanced hydrogenation upgrading scheme (hydropyrolysis) has been developed. The University of Arkansas, in collaboration with Diversified Petroleum, Inc., has been working on a fatty acid, solvent extraction process. Oleic acid is the solvent/surfactant. Solvent is recovered by adjusting processing fluid concentrations to separate without expensive operations. Western Research Institute has a PDU-scale scheme called the Recycle Oil Pyrolysis and Extraction (ROPE) process, which combines solvent (hot recycle bitumen) and pyrolytic extraction. 14 refs., 19 figs.

  2. Archaen to Recent aeolian sand systems and their sedimentary record

    DEFF Research Database (Denmark)

    Rodríguez-López, Juan Pedro; Clemmensen, Lars B; Lancaster, Nick

    2014-01-01

    The sedimentary record of aeolian sand systems extends from the Archean to the Quaternary, yet current understanding of aeolian sedimentary processes and product remains limited. Most preserved aeolian successions represent inland sand-sea or dunefield (erg) deposits, whereas coastal systems...... are primarily known from the Cenozoic. The complexity of aeolian sedimentary processes and facies variability are under-represented and excessively simplified in current facies models, which are not sufficiently refined to reliably account for the complexity inherent in bedform morphology and migratory...... behaviour, and therefore cannot be used to consistently account for and predict the nature of the preserved sedimentary record in terms of formative processes. Archean and Neoproterozoic aeolian successions remain poorly constrained. Palaeozoic ergs developed and accumulated in relation...

  3. It's in the sand

    OpenAIRE

    Mitchell, Clive

    2016-01-01

    Sand is sand isn’t it? Sand gets everywhere but rather than a nuisance it is a valuable, high-purity raw material. Clive Mitchell, Industrial Minerals Specialist at the British Geological Survey (BGS), talks us through what sand is, what it can be used for and how to find it. His exploration of sand takes us from the deserts of Arabia to the damp sand pits of Mansfield!

  4. Autoinhibitory mechanisms of ERG studied by molecular dynamics simulations

    Science.gov (United States)

    Lu, Yan; Salsbury, Freddie R.

    2015-01-01

    ERG, an ETS-family transcription factor, acts as a regulator of differentiation of early hematopoietic cells. It contains an autoinhibitory domain, which negatively regulates DNA-binding. The mechanism of autoinhibitory is still illusive. To understand the mechanism, we study the dynamical properties of ERG protein by molecular dynamics simulations. These simulations suggest that DNA binding autoinhibition associates with the internal dynamics of ERG. Specifically, we find that (1), The N-C terminal correlation in the inhibited ERG is larger than that in uninhibited ERG that contributes to the autoinhibition of DNA-binding. (2), DNA-binding changes the property of the N-C terminal correlation from being anti-correlated to correlated, that is, changing the relative direction of the correlated motions and (3), For the Ets-domain specifically, the inhibited and uninhibited forms exhibit essentially the same dynamics, but the binding of the DNA decreases the fluctuation of the Ets-domain. We also find from PCA analysis that the three systems, even with quite different dynamics, do have highly similar free energy surfaces, indicating that they share similar conformations.

  5. Multifocal ERG Guiding Therapy in a Case of Hydroxychloroquine Premaculopathy

    Directory of Open Access Journals (Sweden)

    José Antonio Sáez-Moreno

    2015-01-01

    Full Text Available We report the case of a 28-year-old female treated for systemic lupus erythematosus with hydroxychloroquine (200 mg/day for 11 years. She was visually asymptomatic, with normal fundus appearance, normal colour vision testing findings, 20/20 visual acuity in both eyes, and only mild central bilateral defects on 10-2 perimetry. Multifocal electroretinography (mfERG showed low density values for ring 1 in both eyes. Because the patient had not previously responded to alternative treatments and in consultation with her physician, the hydroxychloroquine dose was reduced to 200 mg four days/week. Four serial mfERGs performed at 4, 18, 25, and 34 months after dose reduction showed a progressive improvement in the definition and density of the responses until they were normalized at the third mfERG (25 months after hydroxychloroquine dose reduction. The fourth and final mfERG at 34 months confirmed the recovery in both eyes. Perimetry defects were mostly normalized. These results demonstrate the importance of mfERG for the safe management of patients under long-term hydroxychloroquine treatment.

  6. Morphology and distribution of common 'sand' dunes on Mars - Comparison with the earth

    Science.gov (United States)

    Breed, C. S.; Grolier, M. J.; Mccauley, J. F.

    1979-01-01

    A comparative study of Martian and terrestrial dunes was made based on Viking Orbiter pictures and aerial pictures of terrestrial deserts. The morphological similarity between the Martian dunes and terrestrial crescentic dunes implies that the dynamics of dune formation are similar on the two planets, despite Martian constraints on dune formation that include much higher velocity winds required to move 'sand' in saltation, the possible inhibition of sand movement by absorbed water vapor, the seasonal 'snow' cover in the north circumpolar erg, and a probably sparse sand supply. The absence of longitudinal dunes and the restriction of massive crescentic dunes to a few sites on Mars suggests that Mars may have a long eolian history in which much of the sand suitable for saltation has already been transported to the north polar erg and crater floor fields.

  7. Dinosaur dynamics in the Jurassic Era

    Science.gov (United States)

    Lee, Scott

    2010-04-01

    Dinosaurs were fascinating animals and elicit much excitement in the classroom. Analysis of fossilized dinosaur trackways permits one to estimate the locomotion speeds and accelerations of these extinct beasts. Such analysis allows one to apply Newton's laws of motion to examples from the Jurassic Era.

  8. SICILIAN JURASSIC PHYSIOGRAPHY AND GEOLOGIC REALMS (ITALY

    Directory of Open Access Journals (Sweden)

    BENEDETTO ABATE

    2004-03-01

    Full Text Available Two tectono-sedimentary domains, which were deformed during the Neogene and evolved into two large structural sectors, characterize the Sicilian Jurassic: the Maghrebides and Peloritani. Africa margin sediments, passing downward to Triassic successions and perhaps originally to Paleozoic deposits, characterize the former. The latter belongs to the European "Calabrian Arc", where the Jurassic transgressively rests on a continental substrate (i.e. the crystalline Variscan basement. These domains are characterized by four sedimentary facies: shallow platform-derived limestones; condensed seamount-type red limestones; nodular limestones with ammonites; deep radiolarites and shales. These facies are illustrated in a dozen of stratigraphic logs. The drowning of most Triassic-Liassic carbonate platforms or ramps and the deepening of adjacent basins came with inferred Jurassic strike-slip tectonics, connected to the relative movement of Africa (Gondwanan part vs Europe (Laurasian part; the same strike-slip tectonics may have caused scattered intraplate volcanic seamounts found in Maghrebides. During the Jurassic the Maghrebide realm was characterized by the interfingering of basins and carbonate platforms. During the Early and Middle Liassic, carbonate platforms and ramps were dominant. Since Toarcian either radiolarites in some basins or Ammonite-bearing calcareous muds developed with intervening basaltic flows, and were accompanied by condensed pelagic carbonates on the ensialic seamount-type highs. The Peloritani realm displays similar characteristics, but with later transgression on the basement, several strike-slip basins and without any volcanoes.

  9. New Early Jurassic Tetrapod Assemblages Constrain Triassic-Jurassic Tetrapod Extinction Event

    Science.gov (United States)

    Olsen, P. E.; Shubin, N. H.; Anders, M. H.

    1987-08-01

    The discovery of the first definitively correlated earliest Jurassic (200 million years before present) tetrapod assemblage (Fundy basin, Newark Supergroup, Nova Scotia) allows reevaluation of the duration of the Triassic-Jurassic tetrapod extinction event. Present are tritheledont and mammal-like reptiles, prosauropod, theropod, and ornithischian dinosaurs, protosuchian and sphenosuchian crocodylomorphs, sphenodontids, and hybodont, semionotid, and palaeonisciform fishes. All of the families are known from Late Triassic and Jurassic strata from elsewhere; however, pollen and spore, radiometric, and geochemical correlation indicate an early Hettangian age for these assemblages. Because all ``typical Triassic'' forms are absent from these assemblages, most Triassic-Jurassic tetrapod extinctions occurred before this time and without the introduction of new families. As was previously suggested by studies of marine invertebrates, this pattern is consistent with a global extinction event at the Triassic-Jurassic boundary. The Manicouagan impact structure of Quebec provides dates broadly compatible with the Triassic-Jurassic boundary and, following the impact theory of mass extinctions, may be implicated in the cause.

  10. Characterization of hERG1a and hERG1b potassium channels-a possible role for hERG1b in the I (Kr) current

    DEFF Research Database (Denmark)

    Larsen, Anders Peter; Olesen, Søren-Peter; Grunnet, Morten

    2008-01-01

    I (Kr) is the fast component of the delayed rectifier potassium currents responsible for the repolarization of the cardiac muscle. The molecular correlate underlying the I (Kr) current has been identified as the hERG1 channel. Recently, two splice variants of the hERG1 alpha-subunit, hERG1a and h...... in the presence of hERG1b, whereas no difference in the time constant of inactivation was observed. The voltage-dependent recovery from inactivation was also similar. However, the time constant of recovery from inactivation was significantly faster for hERG1b channels compared to hERG1a and hERG1a...

  11. TMPRSS2-ERG Gene Fusion Causing ERG Overexpression Precedes Chromosome Copy Number Changes in Prostate Carcinomas, Paired HGPIN Lesions

    Directory of Open Access Journals (Sweden)

    Nuno Cerveira

    2006-10-01

    Full Text Available TMPRSS2-ETS gene fusions have been found recurrently in prostate carcinomas, but not in the presumed precursor lesion, high-grade prostatic intraepithelial neoplasia (HGPIN. However, HGPIN lesions may share chromosomal changes with prostate cancer. To determine the relative order of genetic events in prostate carcinogenesis, we have analyzed 34 prostate carcinomas, 19 paired HGPIN lesions, 14 benign prostate hyperplasias, 11 morphologically normal prostatic tissues for TMPRSS2-ERG, TMPRSS2-ETV1 rearrangements, genomic imbalances. TMPRSS2 exon 1 was fused in-frame with ERG exon 4 in 17 of 34 (50% prostate carcinomas, in 4 of 19 (21% HGPIN lesions, but in none of controls. The findings were further validated by sequencing analysis, by the real-time polymerase chain reaction quantification of TMPRSS2-ERG fusion transcript, the ERG exons 5/6:exons 1/2 expression ratio. Chromosome copy number changes were detected by comparative genomic hybridization in 42% of clinically confined carcinomas, in none of the 16 HGPIN lesions analyzed. We demonstrate for the first time that the TMPRSS2-ERG fusion gene can be detected in a proportion of HGPIN lesions, that this molecular rearrangement is an early event that may precede chromosome-level alterations in prostate carcinogenesis.

  12. Voltage-dependent gating of hERG potassium channels

    Directory of Open Access Journals (Sweden)

    Yen May eCheng

    2012-05-01

    Full Text Available The mechanisms by which voltage-gated channels sense changes in membrane voltage and energetically couple this with opening of the ion conducting pore has been the source of significant interest. In voltage-gated potassium (Kv channels, much of our knowledge in this area comes from Shaker-type channels, for which voltage-dependent gating is quite rapid. In these channels, activation and deactivation are associated with rapid reconfiguration of the voltage-sensing domain unit that is electromechanically coupled, via the S4-S5 linker helix, to the rate-limiting opening of an intracellular pore gate. However, fast voltage-dependent gating kinetics are not typical of all Kv channels, such as Kv11.1 (human ether-a-go-go related gene, hERG, which activates and deactivates very slowly. Compared to Shaker channels, our understanding of the mechanisms underlying slow hERG gating is much poorer. Here, we present a comparative review of the structure-function relationships underlying voltage-dependent gating in Shaker and hERG channels, with a focus on the roles of the voltage sensing domain and the S4-S5 linker that couples voltage sensor movements to the pore. Measurements of gating current kinetics and fluorimetric analysis of voltage sensor movement are consistent with models suggesting that the hERG activation pathway contains a voltage independent step, which limits voltage sensor transitions. Constraints upon hERG voltage sensor movement may result from loose packing of the S4 helices and additional intra-voltage sensor counter charge interactions. More recent data suggest that key amino acid differences in the hERG voltage sensing unit and S4-S5 linker, relative to fast activating Shaker-type Kv channels, may also contribute to the increased stability of the resting state of the voltage sensor.

  13. The Jurassic of Denmark and Greenland: Late Triassic – Jurassic development of the Danish Basin and the Fennoscandian Border Zone, southern Scandinavia

    Directory of Open Access Journals (Sweden)

    Nielsen, Lars Henrik

    2003-10-01

    Full Text Available The continental to marine Upper Triassic – Jurassic succession of the Danish Basin and the Fennoscandian Border Zone is interpreted within a sequence stratigraphic framework, and the evolution of the depositional basin is discussed. The intracratonic Permian–Cenozoic Danish Basin was formed by Late Carboniferous – Early Permian crustal extension followed by subsidence governed primarily by thermal cooling and local faulting. The basin is separated from thestable Precambrian Baltic Shield by the Fennoscandian Border Zone, and is bounded by basement blocks of the Ringkøbing–Fyn High towards the south. In Late Triassic – Jurassic times, the basin was part of the epeiric shallow sea that covered most of northern Europe. The Upper Triassic – Jurassic basin-fill is subdivided into two tectono-stratigraphic units by a basinwide intra-Aalenian unconformity. The Norian – Lower Aalenian succession was formed under relative tectonic tranquillity and shows an overall layer-cake geometry, except for areas with local faults and salt movements.Deposition was initiated by a Norian transgression that led to shallow marine deposition and was accompanied by a gradual climatic change to more humid conditions. Extensive sheets of shoreface sand and associated paralic sediments were deposited during short-lived forced regressions in Rhaetian time. A stepwise deepening and development of fully marine conditions followed in the Hettangian – Early Sinemurian. Thick uniform basinwide mud blankets weredeposited on an open storm-influenced shelf, while sand was trapped at the basin margins. This depositional pattern continued until Late Toarcian – Early Aalenian times when the basin became restricted due to renewed uplift of the Ringkøbing–Fyn High. In Middle Aalenian – Bathonian times, the former basin area was subjected to deep erosion, and deposition became restricted to the fault-bounded Sorgenfrei–Tornquist Zone. Eventually the fault margins

  14. N-myc Downstream Regulated Gene 1 (NDRG1 Is Fused to ERG in Prostate Cancer

    Directory of Open Access Journals (Sweden)

    Dorothee Pflueger

    2009-08-01

    Full Text Available A step toward the molecular classification of prostate cancer was the discovery of recurrent erythroblast transformation. specific rearrangements, most commonly fusing the androgen-regulated TMPRSS2 promoter to ERG. The TMPRSS2-ERG fusion is observed in around 90% of tumors that overexpress the oncogene ERG. The goal of the current study was to complete the characterization of these ERG-overexpressing prostate cancers. Using fluorescence in situ hybridization and reverse transcription.polymerase chain reaction assays, we screened 101 prostate cancers, identifying 34 cases (34% with the TMPRSS2-ERG fusion. Seven cases demonstrated ERG rearrangement by fluorescence in situ hybridization without the presence of TMPRSS2-ERG fusion messenger RNA transcripts. Screening for known 5' partners, we determined that three cases harbored the SLC45A3-ERG fusion. To discover novel 5' partners in these ERG-overexpressing and ERG-rearranged cases, we used paired-end RNA sequencing. We first confirmed the utility of this approach by identifying the TMPRSS2-ERG fusion in a known positive prostate cancer case and then discovered a novel fusion involving the androgen-inducible tumor suppressor, NDRG1 (N-myc downstream regulated gene 1, and ERG in two cases. Unlike TMPRSS2-ERG and SCL45A3-ERG fusions, the NDRG1-ERG fusion is predicted to encode a chimeric protein. Like TMPRSS2, SCL45A3 and NDRG1 are inducible not only by androgen but also by estrogen. This study demonstrates that most ERG-overexpressing prostate cancers harbor hormonally regulated TMPRSS2-ERG, SLC45A3-ERG, or NDRG1-ERG fusions. Broader implications of this study support the use of RNA sequencing to discover novel cancer translocations.

  15. Sedimentary cycles in a Mesoproterozoic aeolian erg-margin succession: Mangabeira Formation, Espinhaço Supergroup, Brazil

    Science.gov (United States)

    Bállico, M. B.; Scherer, C. M. S.; Mountney, N. P.; Souza, E. G.; Reis, A. D.; Raja Gabaglia, G. P.; Magalhães, A. J. C.

    2017-03-01

    Aeolian systems were abundant and widespread in the early Proterozoic, post-2.2 Ga. However, the majority of aeolian successions of such great age are intensely deformed and are preserved only in a fragmentary state meaning that, hitherto, few attempts have been made to apply a sequence stratigraphic approach to determine mechanisms of aeolian construction, accumulation and preservation in such systems. The Mangabeira Formation is a well preserved Mesoproterozoic erg successions covering part of the São Francisco Craton, northeastern Brazil. The lower unit of the Mangabeira Formation ( 500 m thick) comprises aeolian deposits of dune, interdune, and sand-sheet origin, as well as some of waterlain origin. These deposits are organized into vertically stacked depositional cycles, each 6 to 20 m thick, and characterized by aeolian sandsheet and waterlain deposits succeeded by aeolian dune and interdune deposits indicative of a drying-upward trend. Aeolian cross-strata exhibit a mean dip direction to the north. Each of these cycles likely arose in response to climatic oscillation from relatively humid to arid conditions, possibly related to orbital forcing. The lower unit of the Mangabeira Formation comprises up to 14 erg sequences. The accumulation and preservation of each was determined by the relative rate of water-table rise and the availability of sand for aeolian transport, both of which changed through time, resulting in the preservation of a succession of repeated drying-upward cycles.

  16. Industrial sand and gravel

    Science.gov (United States)

    Dolley, T.P.

    2013-01-01

    Domestic production of industrial sand and gravel in 2012 was about 49.5 Mt (55 million st), increasing 13 percent compared with that of 2011. Some important end uses for industrial sand and gravel include abrasives, filtration, foundry, glassmaking, hydraulic fracturing sand (frac sand) and silicon metal applications.

  17. Taphonomy and paleoecology inferences of vertebrate ichnofossils from Guará Formation (Upper Jurassic), southern Brazil

    Science.gov (United States)

    Dentzien-Dias, Paula C.; Schultz, Cesar L.; Bertoni-Machado, Cristina

    2008-03-01

    In southern Brazil, the eolian facies of the Guará Formation (Late Jurassic) reveal footprints and trackways of vertebrates (dinosaurs), as well as burrows made by small vertebrates. All the footprints and trackways are preserved in dunes and sand sheets. The footprints made in the sand sheets are not well preserved due to intense trampling and can be distinguished only by the deformation of the sandstone laminations. In some cases it is possible to see this deformation in plan and in section. Tracks of theropods, ornithopods and middle-sized sauropods are present. Two footprints preserved in the foreset of a paleodune permitted recognition of slide structures and identification of the trackmaker, a theropod. Burrows horizontally across the foresets were found at this same paleodune. Ribbons of massive sandstone - interpreted as the partial filling of the base of the burrows - covered by little blocks of stratified sandstone - suggest the collapse of the burrow roof inward. There are no body fossils in the Guará Formation, consequently the preservation of these tracks provides unique evidence of widespread dinosaurs activity in southern Brazil near the end of the Jurassic.

  18. Rosuvastatin blocks hERG current and prolongs cardiac repolarization.

    Science.gov (United States)

    Plante, Isabelle; Vigneault, Patrick; Drolet, Benoît; Turgeon, Jacques

    2012-02-01

    Blocking of the potassium current I(Kr) [human ether-a-go-go related gene (hERG)] is generally associated with an increased risk of long QT syndrome (LQTS). The 3-hydroxy-3-methyl-glutaryl-coenzyme A reductase inhibitor, rosuvastatin, is a methanesulfonamide derivative, which shows structural similarities with several I(Kr) blockers. Hence, we assessed the effects of rosuvastatin on cardiac repolarization by using in vitro, ex vivo, and in vivo models. Patch clamp experiments on hERG-transfected human embryonic kidney (HEK) 293 cells established the potency of rosuvastatin to block hERG [half maximal inhibitory concentration (IC(50) ) = 195 nM]. We showed in isolated guinea pig hearts that 195 nM rosuvastatin prolonged (basic cycle length of 250 ms; p cancer resistance protein (BCRP), multidrug resistance gene (MDR1)] and influx [organic anion transporting polypeptide (OATP) 2B1] transporters involved in the disposition and cardiac distribution of the drug. Genetic polymorphisms observed for BCRP, MDR1, and OATP2B1, and IC(50) determined for hERG blocking lead us to propose that some patients may be at risk of rosuvastatin-induced LQTS.

  19. TMPRSS2-ERG and PTEN loss in prostate cancer.

    Science.gov (United States)

    Squire, Jeremy A

    2009-05-01

    Two studies show that the common recurrent gene fusion between TMPRSS2 and ERG promotes prostate cancer in both mouse and humans when PTEN is concurrently lost. In human prostate cancer, the presence of both these aberrations may be indicative of poor prognosis, suggesting that preclinical therapeutic research should target both of these pathways.

  20. Investigation of Retinal Spatial Interaction Using mfERG Stimulation

    Directory of Open Access Journals (Sweden)

    Patrick H. W. Chu

    2011-05-01

    Full Text Available Introduction: Adaptation is one of the key characteristic of our vision which can maximize the visual function. It applies to both spatial and temporal characteristics. The fast flickering stimulation characteristics of the multifocal electroretinogram (mfERG can be applied to analyze retinal interactions between flashes and to investigate retinal temporal processing mechanism. Besides, its localized stimulus pattern can also be used as a tool for investigation of retinal spatial interaction. Methods: The mfERG recordings were obtained from 13 eyes of 9, normal, six-week-old Yorkshire pigs. The control mfERG was measured using the pattern consisting of 103 nonscaled hexagons, where each hexagon will follow a pre-set m-sequence. Nine isolated hexagons from the 103 nonscaled pattern were chosen in the masking mfERG stimulation, where the remaining hexagons were kept at constant luminance. First-order and the second-order kernel responses were analyzed, which represent the outer and inner retinal responses, respectively. Results: The second-order kernel response amplitude from the visual streak region showed a significant enhancement under the masking stimulation. Conclusions: The enhancement found under the masking condition indicates that the retinal signal will be suppressed under surrounding flicker stimulation, and this spatial inhibitory mechanism may originate from the inner retina.

  1. The Jurassic of Denmark and Greenland: The Jurassic of Skåne, southern Sweden

    Directory of Open Access Journals (Sweden)

    Sivhed, Ulf

    2003-10-01

    Full Text Available In Sweden, Jurassic strata are restricted to Skåne and adjacent offshore areas. Jurassic sedimentary rocks predominantly comprise sandy to muddy siliciclastics, with subordinate coal beds andfew carbonate-rich beds. During Mesozoic times, block-faulting took place in the Sorgenfrei–Tornquist Zone, a tectonic zone which transects Skåne in a NW–SE direction. The Jurassic depositionalenvironments in Skåne were thus strongly influenced by uplift and downfaulting, and to some extent by volcanism. Consequently, the sedimentary record reveals evidence of numerous transgressions, regressions and breaks in sedimentation. Relative sea-level changes played a significant role in controlling the facies distribution, as deposition mainly took place in coastal plain to shallow shelf environments.The alluvial deposits in Skåne include floodplain palaeosols, autochthonous coals, overbank sandstones, and stream channel pebbly sandstones. Restricted marine strata comprise intertidalheteroliths with mixed freshwater and marine trace fossil assemblages, and intertidal delta distributary channel sandstones. Shallow marine sediments encompass subtidal and shoreface sandstoneswith herringbone structures, and bioturbated mudstones with tempestite sandstones. Offshore deposits typically comprise extensively bioturbated muddy sandstones.Floral remains, palaeopedology, clay mineralogy and arenite maturity indicate a warm and humid climate in Skåne throughout the Jurassic, possibly with slightly increasing aridity towards the end of the period. Most Jurassic strata in Skåne have been subjected to mild burial diagenesis, and the petroleum generative window has rarely been reached.

  2. Eastern Scheldt Sand, Baskarp Sand No. 15

    DEFF Research Database (Denmark)

    Andersen, A. T; Madsen, E. B.; Schaarup-Jensen, A. L.

    The present data report contains data from 13 drained triaxial tests, performed on two different sand types in the Soil Mechanics Laboratory at Aalborg University in March, 1997. Two tests have been performed on Baskarp Sand No. 15, which has already ken extensively tested in the Soil Mechanics...... Laboratory. The remaining 11 triaxial tests have ben performed on Eastern Scheldt Sand, which is a material not yet investigated at the Soil Mechanics Laboratory. In the first pari of this data report, the characteristics of the two sand types in question will be presented. Next, a description...

  3. Antibody-independent targeted quantification of TMPRSS2-ERG fusion protein products in prostate cancer.

    Science.gov (United States)

    He, Jintang; Sun, Xuefei; Shi, Tujin; Schepmoes, Athena A; Fillmore, Thomas L; Petyuk, Vladislav A; Xie, Fang; Zhao, Rui; Gritsenko, Marina A; Yang, Feng; Kitabayashi, Naoki; Chae, Sung-Suk; Rubin, Mark A; Siddiqui, Javed; Wei, John T; Chinnaiyan, Arul M; Qian, Wei-Jun; Smith, Richard D; Kagan, Jacob; Srivastava, Sudhir; Rodland, Karin D; Liu, Tao; Camp, David G

    2014-10-01

    Fusions between the transmembrane protease serine 2 (TMPRSS2) and ETS related gene (ERG) represent one of the most specific biomarkers that define a distinct molecular subtype of prostate cancer. Studies of TMPRSS2-ERG gene fusions have seldom been performed at the protein level, primarily due to the lack of high-quality antibodies suitable for quantitative studies. Herein, we applied a recently developed PRISM (high-pressure high-resolution separations with intelligent selection and multiplexing)-SRM (selected reaction monitoring) strategy for quantifying ERG protein in prostate cancer cell lines and tumors. The highly sensitive PRISM-SRM assays provided confident detection of 6 unique ERG peptides in both TMPRSS2-ERG positive cell lines and tissues, but not in cell lines or tissues lacking the TMPRSS2-ERG rearrangement, clearly indicating that ERG protein expression is significantly increased in the presence of the TMPRSS2-ERG gene fusion. Significantly, our results provide evidence that two distinct ERG protein isoforms are simultaneously expressed in TMPRSS2-ERG positive samples as evidenced by the concomitant detection of two mutually exclusive peptides in two patient tumors and in the VCaP prostate cancer cell line. Three peptides, shared across almost all fusion protein products, were determined to be the most abundant peptides, providing "signature" peptides for detection of ERG over-expression resulting from TMPRSS2-ERG gene fusion. The PRISM-SRM assays provide valuable tools for studying TMPRSS2-ERG gene fusion protein products in prostate cancer.

  4. The Jurassic of Denmark and Greenland: The Upper Jurassic of Europe: its subdivision and correlation

    Directory of Open Access Journals (Sweden)

    Zeiss, Arnold

    2003-10-01

    Full Text Available In the last 40 years, the stratigraphy of the Upper Jurassic of Europe has received much attention and considerable revision; much of the impetus behind this endeavour has stemmed from the work of the International Subcommission on Jurassic Stratigraphy. The Upper Jurassic Series consists of three stages, the Oxfordian, Kimmeridgian and Tithonian which are further subdivided into substages, zones and subzones, primarily on the basis of ammonites. Regional variations between the Mediterranean, Submediterranean and Subboreal provinces are discussed and correlation possibilities indicated. The durations of the Oxfordian, Kimmeridgian and Tithonian Stages are reported to have been 5.3, 3.4 and 6.5 Ma, respectively. This review of the present status of Upper Jurassic stratigraphy aids identification of a number of problems of subdivision and definition of Upper Jurassic stages; in particular these include correlation of the base of the Kimmeridgian and the top of the Tithonian between Submediterranean and Subboreal Europe. Although still primarily based on ammonite stratigraphy, subdivision of the Upper Jurassic is increasingly being refined by the incorporation of other fossil groups; these include both megafossils, such as aptychi, belemnites, bivalves, gastropods, brachiopods, echinoderms, corals, sponges and vertebrates, and microfossils such as foraminifera, radiolaria, ciliata, ostracodes, dinoflagellates, calcareous nannofossils, charophyaceae, dasycladaceae, spores and pollen. Important future developments will depend on the detailed integration of these disparate biostratigraphic data and their precise combination with the abundant new data from sequence stratigraphy, utilising the high degree of stratigraphic resolution offered by certain groups of fossils. This article also contains some notes on the recent results of magnetostratigraphy and sequence chronostratigraphy.

  5. Peptide Immunization Against ERG and Immunogenic Mutations to Treat Prostate Cancer

    Science.gov (United States)

    2014-09-01

    transgenic tumor model and the subcutaneous ERG tumor model To deliver the ERG319-327 epitope in vivo, we constructed a listeria -based delivery...range of different cancers. In vivo testing of the Listeria - ERG construct has been performed, and a strong ERG319-327 response is generated (Figure 1...Using the in vivo models developed above, we are currently testing the anti-tumor efficacy of this listeria vaccine construct, however, these

  6. Stereoselective inhibition of the hERG1 potassium channel

    Directory of Open Access Journals (Sweden)

    Liliana eSintra Grilo

    2010-11-01

    Full Text Available A growing number of drugs have been shown to prolong cardiac repolarization, predisposing individuals to life-threatening ventricular arrhythmias known as Torsades de Pointes. Most of these drugs are known to interfere with the human ether à-gogo related gene 1 (hERG1 channel, whose current is one of the main determinants of action potential duration. Prolonged repolarization is reflected by lengthening of the QT interval of the electrocardiogram, as seen in the suitably named drug-induced long QT syndrome. Chirality (presence of an asymmetric atom is a common feature of marketed drugs, which can therefore exist in at least two enantiomers with distinct three-dimensional structures and possibly distinct biological fates. Both the pharmacokinetic and pharmacodynamic properties can differ between enantiomers, as well as also between individuals who take the drug due to metabolic polymorphisms. Despite the large number of reports about drugs reducing the hERG1 current, potential stereoselective contributions have only been scarcely investigated. In this review, we present a non-exhaustive list of clinically important molecules which display chiral toxicity that may be related to hERG1-blocking properties. We particularly focus on methadone cardiotoxicity, which illustrates the importance of the stereoselective effect of drug chirality as well as individual variations resulting from pharmacogenetics. Furthermore, it seems likely that, during drug development, consideration of chirality in lead optimization and systematic assessment of the hERG1 current block with all enantiomers could contribute to the reduction of the risk of drug-induced LQTS.

  7. Influence green sand system by core sand additions

    OpenAIRE

    N. Špirutová; J. Beňo; V. Bednářová; J. Kříž; M. Kandrnál

    2012-01-01

    Today, about two thirds of iron alloys casting (especially for graphitizing alloys of iron) are produced into green sand systems with usually organically bonded cores. Separation of core sands from the green sand mixture is very difficult, after pouring. The core sand concentration increase due to circulation of green sand mixture in a closed circulation system. Furthermore in some foundries, core sands have been adding to green sand systems as a replacement for new sands. The goal of this co...

  8. Baskarp Sand No. 15

    DEFF Research Database (Denmark)

    Borup, Marianne; Hedegaard, Jette

    The Soil Mechanics Laboratory has started performing tests with a new sand, Baskarp No 15. Baskarp No 15 is a graded sand from Sweden. The shapes of the largest grains are round, while the small grains have sharp edges. The main part of of Baskarp No 15 is quarts, but it also contains feldspar...... and biotit. Mainly the sand will be used for tests concerning the development og the theory of building up pore pressure in sand, L. B. Ibsen 1993....

  9. File list: Oth.ALL.50.Erg.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

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  10. File list: Oth.ALL.20.Erg.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

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  11. File list: Oth.Prs.20.Erg.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

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  12. File list: Oth.ALL.05.Erg.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

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    Lifescience Database Archive (English)

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  14. File list: Oth.Prs.50.Erg.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Oth.Prs.50.Erg.AllCell mm9 TFs and others Erg Prostate SRX283740,SRX283735,SRX28375...0,SRX283745 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Oth.Prs.50.Erg.AllCell.bed ...

  15. File list: Oth.Prs.05.Erg.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

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  16. File list: Oth.Bld.05.Erg.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

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  17. File list: Oth.ALL.10.Erg.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

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    Lifescience Database Archive (English)

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  19. File list: Oth.Bld.50.Erg.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

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  20. File list: Oth.Bld.10.Erg.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

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  1. Activation of ERG2 potassium channels by the diphenylurea NS1643

    DEFF Research Database (Denmark)

    Elmedyb, Pernille; Olesen, Søren-Peter; Grunnet, Morten

    2007-01-01

    Three members of the ERG potassium channel family have been described (ERG1-3 or Kv 11.1-3). ERG1 is by far the best characterized subtype and it constitutes the molecular component of the cardiac I(Kr) current. All three channel subtypes are expressed in neurons but their function remains unclear...

  2. An Early Triassic evolving erg system (Iberian Chain, NE Spain): palaeoclimate implications

    NARCIS (Netherlands)

    Soria, A.R.; Liesa, C.L.; Rodriguez-Lopez, J.P.; Melendez, N.; Boer, P.L. de; Melendez, A.

    2011-01-01

    The Triassic Buntsandstein facies in the north-eastern Iberian Chain (central eastern Spain), previously considered to be fluvial in origin, is shown to contain an evolving erg system. The preserved erg accumulation comprises a succession that represents the transition from a wadi belt via inner erg

  3. File list: Oth.Bld.20.ERG.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Oth.Bld.20.ERG.AllCell hg19 TFs and others ERG Blood SRX063919,SRX063921,SRX063922,...2,SRX026638,SRX026643,SRX026648,SRX026634,SRX026641,SRX248930,SRX326889 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Oth.Bld.20.ERG.AllCell.bed ...

  4. File list: Oth.Prs.50.ERG.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

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  5. File list: Oth.Bld.10.ERG.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

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  6. File list: Oth.Prs.20.ERG.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

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  7. File list: Oth.Prs.05.ERG.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

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    Lifescience Database Archive (English)

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  9. File list: Oth.Bld.50.ERG.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

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  10. Stereoselective Blockage of Quinidine and Quinine in the hERG Channel and the Effect of Their Rescue Potency on Drug-Induced hERG Trafficking Defect

    Directory of Open Access Journals (Sweden)

    Meng Yan

    2016-09-01

    Full Text Available Diastereoisomers of quinidine and quinine are used to treat arrhythmia and malaria, respectively. It has been reported that both drugs block the hERG (human ether-a-go-go-related gene potassium channel which is essential for myocardium repolarization. Abnormality of repolarization increases risk of arrhythmia. The aim of our research is to study and compare the impacts of quinidine and quinine on hERG. Results show that both drugs block the hERG channel, with quinine 14-fold less potent than quinidine. In addition, they presented distinct impacts on channel dynamics. The results imply their stereospecific block effect on the hERG channel. However, F656C-hERG reversed this stereoselectivity. The mutation decreases affinity of the two drugs with hERG, and quinine was more potent than quinidine in F656C-hERG blockage. These data suggest that F656 residue contributes to the stereoselective pocket for quinidine and quinine. Further study demonstrates that both drugs do not change hERG protein levels. In rescue experiments, we found that they exert no reverse effect on pentamidine- or desipramine-induced hERG trafficking defect, although quinidine has been reported to rescue trafficking-deficient pore mutation hERG G601S based on the interaction with F656. Our research demonstrated stereoselective effects of quinidine and quinine on the hERG channel, and this is the first study to explore their reversal potency on drug-induced hERG deficiency.

  11. Lund Sand No 0

    DEFF Research Database (Denmark)

    Ibsen, Lars Bo; Jakobsen, Finn Rosendal

    During the last 15 years the Geotechnical Engineering Group (GEG) at Aalborg University has performed triaxial tests with a sand called Lund No 0. Lund No 0 is a graded sand from a gravel pit near Horsens in Denmark. For the classification of the sand the following tests have been performed: Sieve...

  12. Antibody-independent Targeted Quantification of TMPRSS2-ERG Fusion Protein Products in Prostate Cancer

    Energy Technology Data Exchange (ETDEWEB)

    He, Jintang; Sun, Xuefei; Shi, Tujin; Schepmoes, Athena A.; Fillmore, Thomas L.; Petyuk, Vladislav A.; Xie, Fang; Zhao, Rui; Gritsenko, Marina A.; Yang, Feng; Kitabayashi, Naoki; Chae, Sung Suk; Rubin, Mark; Siddiqui, Javed; Wei, John; Chinnaiyan, Arul M.; Qian, Weijun; Smith, Richard D.; Kagan, Jacob; Srivastava, Sudhir; Rodland, Karin D.; Liu, Tao; Camp, David G.

    2014-10-01

    Fusions between the transmembrane protease serine 2 (TMPRSS2) and ETS related gene (ERG) represent one of the most specific biomarkers that define a distinct molecular subtype of prostate cancer. The studies on TMPRSS2-ERG gene fusions have seldom been performed at the protein level, primarily due to the lack of high-quality antibodies or an antibody-independent method that is sufficiently sensitive for detecting the truncated ERG protein products resulting from TMPRSS2-ERG gene fusions and alternative splicing. Herein, we applied a recently developed PRISM (high-pressure high-resolution separations with intelligent selection and multiplexing)-SRM (selected reaction monitoring) strategy for quantifying ERG protein in prostate cancer cell lines and tumors. The highly sensitive PRISM-SRM assays led to confident detection of 6 unique ERG peptides in either the TMPRSS2-ERG positive cell lines or tissues but not in the negative controls, indicating that ERG protein expression is highly correlated with TMPRSS2-ERG gene rearrangements. Significantly, our results demonstrated for the first time that at least two groups of ERG protein isoforms were simultaneously expressed at variable levels in TMPRSS2-ERG positive samples as evidenced by concomitant detection of two mutually exclusive peptides. Three peptides shared across almost all fusion protein products were determined to be the most abundant peptides, and hence can be used as “signature” peptides for detecting ERG overexpression resulting from TMPRSS2-ERG gene fusion. These PRISM-SRM assays provide valuable tools for studying TMPRSS2-ERG gene fusion protein products, thus improving our understanding of the role of TMPRSS2-ERG gene fusion in the biology of prostate cancer.

  13. ERG2 and ERG24 Are Required for Normal Vacuolar Physiology as Well as Candida albicans Pathogenicity in a Murine Model of Disseminated but Not Vaginal Candidiasis.

    Science.gov (United States)

    Luna-Tapia, Arturo; Peters, Brian M; Eberle, Karen E; Kerns, Morgan E; Foster, Timothy P; Marrero, Luis; Noverr, Mairi C; Fidel, Paul L; Palmer, Glen E

    2015-10-01

    Several important classes of antifungal agents, including the azoles, act by blocking ergosterol biosynthesis. It was recently reported that the azoles cause massive disruption of the fungal vacuole in the prevalent human pathogen Candida albicans. This is significant because normal vacuolar function is required to support C. albicans pathogenicity. This study examined the impact of the morpholine antifungals, which inhibit later steps of ergosterol biosynthesis, on C. albicans vacuolar integrity. It was found that overexpression of either the ERG2 or ERG24 gene, encoding C-8 sterol isomerase or C-14 sterol reductase, respectively, suppressed C. albicans sensitivity to the morpholines. In addition, both erg2Δ/Δ and erg24Δ/Δ mutants were hypersensitive to the morpholines. These data are consistent with the antifungal activity of the morpholines depending upon the simultaneous inhibition of both Erg2p and Erg24p. The vacuoles within both erg2Δ/Δ and erg24Δ/Δ C. albicans strains exhibited an aberrant morphology and accumulated large quantities of the weak base quinacrine, indicating enhanced vacuolar acidification compared with that of control strains. Both erg mutants exhibited significant defects in polarized hyphal growth and were avirulent in a mouse model of disseminated candidiasis. Surprisingly, in a mouse model of vaginal candidiasis, both mutants colonized mice at high levels and induced a pathogenic response similar to that with the controls. Thus, while targeting Erg2p or Erg24p alone could provide a potentially efficacious therapy for disseminated candidiasis, it may not be an effective strategy to treat vaginal infections. The potential value of drugs targeting these enzymes as adjunctive therapies is discussed.

  14. ERG is required for the differentiation of embryonic stem cells along the endothelial lineage

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    Le Bras Alexandra

    2009-12-01

    Full Text Available Abstract Background The molecular mechanisms that govern stem cell differentiation along the endothelial lineage remain largely unknown. Ets related gene (ERG has recently been shown to participate in the transcriptional regulation of a number of endothelial specific genes including VE-cadherin (CD144, endoglin, and von Willebrand's Factor (vWF. The specific role of the ETS factor ERG during endothelial differentiation has not been evaluated. Results ERG expression and function were evaluated during the differentiation of embryonic stem cells into embryoid bodies (EB. The results of our study demonstrate that ERG is first expressed in a subpopulation of vascular endothelial growth factor receptor 2 (VEGF-R2 expressing cells that also express VE-cadherin. During ES cell differentiation, ERG expression remains restricted to cells of the endothelial lineage that eventually coalesce into primitive vascular structures within embryoid bodies. ERG also exhibits an endothelial cell (EC-restricted pattern during embryogenesis. To further define the role of ERG during ES cell differentiation, we used a knockdown strategy to inhibit ERG expression. Delivery of three independent shRNA led to 70-85% reductions in ERG expression during ES cell differentiation compared to no change with control shRNA. ERG knockdown was associated with a marked reduction in the number of ECs, the expression of EC-restricted genes, and the formation of vascular structures. Conclusion The ETS factor ERG appears to be a critical regulator of EC differentiation.

  15. Antineoplastic Effects of siRNA against TMPRSS2-ERG Junction Oncogene in Prostate Cancer.

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    Giorgia Urbinati

    Full Text Available TMPRSS2-ERG junction oncogene is present in more than 50% of patients with prostate cancer and its expression is frequently associated with poor prognosis. Our aim is to achieve gene knockdown by siRNA TMPRSS2-ERG and then to assess the biological consequences of this inhibition. First, we designed siRNAs against the two TMPRSS2-ERG fusion variants (III and IV, most frequently identified in patients' biopsies. Two of the five siRNAs tested were found to efficiently inhibit mRNA of both TMPRSS2-ERG variants and to decrease ERG protein expression. Microarray analysis further confirmed ERG inhibition by both siRNAs TMPRSS2-ERG and revealed one common down-regulated gene, ADRA2A, involved in cell proliferation and migration. The siRNA against TMPRSS2-ERG fusion variant IV showed the highest anti-proliferative effects: Significantly decreased cell viability, increased cleaved caspase-3 and inhibited a cluster of anti-apoptotic proteins. To propose a concrete therapeutic approach, siRNA TMPRSS2-ERG IV was conjugated to squalene, which can self-organize as nanoparticles in water. The nanoparticles of siRNA TMPRSS2-ERG-squalene injected intravenously in SCID mice reduced growth of VCaP xenografted tumours, inhibited oncoprotein expression and partially restored differentiation (decrease in Ki67. In conclusion, this study offers a new prospect of treatment for prostate cancer based on siRNA-squalene nanoparticles targeting TMPRSS2-ERG junction oncogene.

  16. Modeling the Middle Jurassic ocean circulation

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    Maura Brunetti

    2015-10-01

    Full Text Available We present coupled ocean–sea-ice simulations of the Middle Jurassic (∼165 Ma when Laurasia and Gondwana began drifting apart and gave rise to the formation of the Atlantic Ocean. Since the opening of the Proto-Caribbean is not well constrained by geological records, configurations with and without an open connection between the Proto-Caribbean and Panthalassa are examined. We use a sea-floor bathymetry obtained by a recently developed three-dimensional (3D elevation model which compiles geological, palaeogeographical and geophysical data. Our original approach consists in coupling this elevation model, which is based on detailed reconstructions of oceanic realms, with a dynamical ocean circulation model. We find that the Middle Jurassic bathymetry of the Central Atlantic and Proto-Caribbean seaway only allows for a weak current of the order of 2 Sv in the upper 1000 m even if the system is open to the west. The effect of closing the western boundary of the Proto-Caribbean is to increase the transport related to barotropic gyres in the southern hemisphere and to change water properties, such as salinity, in the Neo-Tethys. Weak upwelling rates are found in the nascent Atlantic Ocean in the presence of this superficial current and we discuss their compatibility with deep-sea sedimentological records in this region.

  17. Lower Jurassic palynostratigraphy of Eastern Siberia

    Science.gov (United States)

    Goryacheva, A. A.

    2017-05-01

    This paper presents the results of a palynological study of the natural outcrops of the Lower and Middle Jurassic on the Kelimyar River (Outcrops 5, 6, 7, 14, and 16) and two boreholes, Middle-Nakynskaya and Ygyata-Tyungskaya 1, in Eastern Siberia. The Ukugut, Tyung, Motorchuna, Suntar, Kyrin, and Kelimyar formations were studied. Six biostrata with dinocysts were established for the Upper Sinemurian-Toarcian. The analysis of the stratigraphic ranges of dinocysts in the sections allowed the identification of the stratigraphic ranges for important genera of dinocysts, which enabled the updating of the geochronology of some biostrata. Three main stages of the evolution of dinocysts in the Early Jurassic in the Siberian Paleobasin were characterized by the appearance, diversification, and disappearance of some orders of dinocysts at certain times. Seven biostrata (beds with characteristic palynoassemblages) were established for the upper Sinemurian-Toarcian on the basis of the study of the taxonomic composition of spores and pollen of land plants and successive changes in the composition of the palynospectra.

  18. The Jurassic of Denmark and Greenland: The Jurassic of the Netherlands

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    Herngreen, G.F. Waldemar

    2003-10-01

    Full Text Available A recent revision of the lithostratigraphy of the Netherlands has triggered an extensive re-evaluation of existing ideas on the Jurassic structural and depositional history. Significant advances can be attributed to the incorporation of sequence stratigraphic concepts. In the course of the Triassic and Jurassic, structural complexity increased progressively. The Jurassic sedimentary succession can be subdivided into three depositional megasequences. Megasequence I (Rhaetian- Aalenian reflects the period between the so-called early and mid-Cimmerian tectonic phases. Megasequence II (Aalenian - Middle Callovian covers the period of activity of the mid-Cimmerian phase. Megasequence III (Middle Callovian - Ryazanian corresponds with the period between the mid-Cimmerian and late Cimmerian phases (particularly after pulse II. In this latter megasequence, six stages (IIIa-f are recognised. Sediments deposited during the Rhaetian and Ryazanian bear a stronger affinity with the Jurassic succession than with Triassic and Cretaceous sediments respectively. These stages are thus treated here as an integral part of the Jurassic succession. During the Rhaetian-Bajocian the area subsided relatively uniformly. A sheet of predominantly fine-grained marine sediments of great lateral uniformity was deposited. During the Toarcian, in particular, basin circulation was largely restricted. The cooling that followed the thermal Central North Sea dome uplift triggered an important extensional phase during the Aalenian-Callovian. The rift phase resulted in the formation of several smaller basins, each with its own characteristic depositional succession. The basins fall into three structural provinces: the eastern province (Lower Saxony Basin, E-W-striking; the northern province (Central Graben, N-S-striking; and the southern-central system (Roer Valley Graben - Broad Fourteens, with a strong NW-SE strike. The mid-Cimmerian event started to affect the Dutch basins during

  19. The Karakum and Kyzylkum sand seas dynamics; mapping and palaeoclimatic interpretations

    Science.gov (United States)

    Maman, Shimrit; Blumberg, Dan G.; Tsoar, Haim; Porat, Naomi

    2015-04-01

    Sand seas are large basins in deserts that are mantled by wind-swept sand and that exhibit varying degrees of vegetation cover. Wilson (1973) was the first to globally map and classify sand seas. Beyond Wilson's maps, however, little research has been published regarding the Karakum and Kyzylkum sand seas of Central Asia. Wilson's maps delineate active ergs from inactive ergs based solely on precipitation. His assumption of annual average rainfall as a factor determining mobility vs. stability of sand seas is too simplistic and does not take into consideration other factors such as biogenic soil crusts and wind power, both of which are known to have major effects on the dynamics of sand dunes. Literature related to mapping and classifying the Central Asian ergs by remote sensing or sand sea classification state (stable/active) is lacking. Moreover, the palaeoclimatic significance of dunes in Central Asia is difficult to assess, as there has been few studies of dune stratigraphy and numerical ages are lacking. Optically stimulated luminescence (OSL) is a firm optical dating method that is used to determine the elapsed time since quartz grains were last exposed to sunlight, thus, their burial. Yet, absolute ages indicating mobilization and stabilization of these sands, are still inadequately known and are here under discussion. The broad concern of this research was to determine the dynamics of the Central Asian sand seas and study the palaeoclimatic changes that brought to their stabilization. As there are no reliable maps or aeolian discussion of these sands, establishment of a digital data base was initially conducted, focusing on identifying and mapping these sand seas. The vast area and inaccessibility make traditional mapping methods virtually impossible. A variety of space-borne imagery both optical and radar, with varying spectral and spatial resolutions was used. These images provided the basis for mapping sand distribution, dune forms, and vegetation cover

  20. Frequent TMPRSS2-ERG rearrangement in prostatic small cell carcinoma detected by fluorescence in situ hybridization: the superiority of fluorescence in situ hybridization over ERG immunohistochemistry.

    Science.gov (United States)

    Schelling, Lindsay A; Williamson, Sean R; Zhang, Shaobo; Yao, Jorge L; Wang, Mingsheng; Huang, Jiaoti; Montironi, Rodolfo; Lopez-Beltran, Antonio; Emerson, Robert E; Idrees, Muhammad T; Osunkoya, Adeboye O; Man, Yan-Gao; Maclennan, Gregory T; Baldridge, Lee Ann; Compérat, Eva; Cheng, Liang

    2013-10-01

    Small cell carcinoma of the prostate is both morphologically and immunohistochemically similar to small cell carcinoma of other organs such as the urinary bladder or lung. TMPRSS2-ERG gene fusion appears to be a highly specific alteration in prostatic carcinoma that is frequently shared by small cell carcinoma. In adenocarcinoma, immunohistochemistry for the ERG protein product has been reported to correlate well with the presence of the gene fusion, although in prostatic small cell carcinoma, this relationship is not completely understood. We evaluated 54 cases of small cell carcinoma of the prostate and compared TMPRSS2-ERG gene fusion status by fluorescence in situ hybridization (FISH) to immunohistochemical staining with antibody to ERG. Of 54 cases of prostatic small cell carcinoma, 26 (48%) were positive for TMPRSS2-ERG gene fusion by FISH and 12 (22%) showed overexpression of ERG protein by immunohistochemistry. Of the 26 cases positive by FISH, 11 were also positive for ERG protein by immunohistochemistry. One tumor was positive by immunohistochemistry but negative by FISH. Urinary bladder small cell carcinoma (n = 25) showed negative results by both methods; however, 2 of 14 small cell carcinomas of other organs (lung, head, and neck) showed positive immunohistochemistry but negative FISH. Positive staining for ERG by immunohistochemistry is present in a subset of prostatic small cell carcinomas and correlates with the presence of TMPRSS2-ERG gene fusion. Therefore, it may be useful in confirming prostatic origin when molecular testing is not accessible. However, sensitivity and specificity of ERG immunohistochemistry in small cell carcinoma are decreased compared to FISH.

  1. ERG rearrangement is associated with prostate cancer-related death in Chinese prostate cancer patients.

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    Mei Qi

    Full Text Available Recently, ETS-related gene (ERG gene rearrangements, phosphatase tensin homologue (PTEN deletions and EGFR family aberrations were characterized as potential biomarkers for prostate cancer (PCa patient management. Although ERG gene rearrangement has been identified in approximately 50% of localized prostate cancers in western countries, the prognostic significance of this critical molecular event remains unknown in Chinese patients. Using fluorescence in situ hybridization (FISH and immunohistochemistry, we evaluated ERG, PTEN and EGFR family aberrations in a cohort of 224 Chinese prostate cancer patients diagnosed in transurethral resection of the prostate (TUR-P. Overall, ERG rearrangement was detected in 23.2% (44/190 cases, of which 54.5% (24/44 showed deletion of the 5'end of ERG. PTEN deletion was identified in 10.8% (19/176 cases. Amplification of EGFR and HER2 genes was present in 1.1% (2/178 and 5.8% (10/173 of cases, respectively. Significant correlation between ERG rearrangement and PTEN deletion was identified in this cohort. EGFR and HER2 aberrations occurred more frequently in PCas without ERG rearrangement than in those with ERG rearrangement, although this did not reach statistical significance. Overall, ERG rearrangement was associated with pre-operative PSA values (P = 0.038 and cancer-related death (P = 0.02, but not with the age, clinical T stage, Gleason score, or Ki-67 labeling index (LI. Notably, multivariate analysis including known prognostic markers revealed ERG rearrangement was an independent prognostic factor (P = 0.022. Additionally, ERG rearrangement status was helpful to identify patients with poor prognosis from PCa group with low Ki-67 LI. In summary, we reported that ERG rearrangement was associated with cancer-related death in Chinese PCa patients. Determination of ERG rearrangement status allows stratification of PCa patients into different survival categories.

  2. An ERG channel inhibitor from the scorpion Buthus eupeus

    DEFF Research Database (Denmark)

    Korolkova, Y.V.; Kozlov, S.A.; Lipkin, A.V.

    2001-01-01

    that the precursor contains a signal peptide of 21 amino acid residues. The mature toxin consists of 36 amino acid residues. BeKm-1 belongs to the family of scorpion venom potassium channel blockers and represents a new subgroup of these toxins. The recombinant BeKm-1 was produced as a Protein A fusion product...... and the three mutants partly inhibited the native M-like current in NG108-15 at 100 nm. The effect of the recombinant BeKm-1 on different K(+) channels was also studied. BeKm-1 inhibited hERG1 channels with an IC(50) of 3.3 nm, but had no effect at 100 nm on hEAG, hSK1, rSK2, hIK, hBK, KCNQ1/KCNE1, KCNQ2/KCNQ3......, KCNQ4 channels, and minimal effect on rELK1. Thus, BeKm-1 was shown to be a novel specific blocker of hERG1 potassium channels....

  3. In vitro chronic effects on hERG channel caused by the marine biotoxin Yessotoxin.

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    Sara Fernández Ferreiro

    2014-06-01

    Currently, published evidence indicates that hERG channel dysfunction can be due to more than one mechanism for many drugs (Guth, 2007. Alterations of hERG channel trafficking are considered an important factor in hERG-related cardiotoxicity. Actually, a screening study revealed that almost 40% of the drugs that block Ikr have also trafficking effects (Wible et al., 2005. Although YTX does not block hERG channels, it has been historically described as cardiotoxic due to in vivo damage to cardiomyocytes. Our results show that YTX induces a significant increase of hERG channel levels on the extracellular side of the plasma membrane in vitro. YTX causes cell death in many cell lines (Korsnes and Espenes, 2011 and the alterations of surface hERG levels might be related to the apoptotic process. However, annexin-V, a relatively early marker of apoptosis (Vermes et al., 1995, occurs later than the increase of surface hERG. Additionally, staurosporine triggered apoptosis without a simultaneous increase of surface hERG, so events are not necessarily related. Therefore YTX-induced elevated hERG in the plasma membrane seem to be independent of apoptosis. Functional implications of hERG currents have been described after alterations of cell surface hERG density (Guth, 2007. YTX did not cause significant alterations of hERG currents. Furthermore the hERG levels after YTX treatment were duplicated, so the effect on currents should be clearly evidenced if these channels were functional. The hERG channels on the cell surface are regulated by its production, translocation to the plasma membrane and degradation. The increase of extracellular channel could be a consequence of a higher production and externalization or a slower degradation. Higher synthesis in our cell model would not be physiologically relevant but our results demonstrated that the amount of immature hERG is reduced instead of increased. Fully glycosylated hERG seems slightly increased in these conditions but it is

  4. New gliding mammaliaforms from the Jurassic

    Science.gov (United States)

    Meng, Qing-Jin; Grossnickle, David M.; Liu, Di; Zhang, Yu-Guang; Neander, April I.; Ji, Qiang; Luo, Zhe-Xi

    2017-08-01

    Stem mammaliaforms are Mesozoic forerunners to mammals, and they offer critical evidence for the anatomical evolution and ecological diversification during the earliest mammalian history. Two new eleutherodonts from the Late Jurassic period have skin membranes and skeletal features that are adapted for gliding. Characteristics of their digits provide evidence of roosting behaviour, as in dermopterans and bats, and their feet have a calcaneal calcar to support the uropagatium as in bats. The new volant taxa are phylogenetically nested with arboreal eleutherodonts. Together, they show an evolutionary experimentation similar to the iterative evolutions of gliders within arboreal groups of marsupial and placental mammals. However, gliding eleutherodonts possess rigid interclavicle-clavicle structures, convergent to the avian furculum, and they retain shoulder girdle plesiomorphies of mammaliaforms and monotremes. Forelimb mobility required by gliding occurs at the acromion-clavicle and glenohumeral joints, is different from and convergent to the shoulder mobility at the pivotal clavicle-sternal joint in marsupial and placental gliders.

  5. High Glucose Represses hERG K+ Channel Expression through Trafficking Inhibition

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    Yuan-Qi Shi

    2015-08-01

    Full Text Available Background/Aims: Abnormal QT prolongation is the most prominent cardiac electrical disturbance in patients with diabetes mellitus (DM. It is well known that the human ether-ago-go-related gene (hERG controls the rapid delayed rectifier K+ current (IKr in cardiac cells. The expression of the hERG channel is severely down-regulated in diabetic hearts, and this down-regulation is a critical contributor to the slowing of repolarization and QT prolongation. However, the intracellular mechanisms underlying the diabetes-induced hERG deficiency remain unknown. Methods: The expression of the hERG channel was assessed via western blot analysis, and the hERG current was detected with a patch-clamp technique. Results: The results of our study revealed that the expression of the hERG protein and the hERG current were substantially decreased in high-glucose-treated hERG-HEK cells. Moreover, we demonstrated that the high-glucose-mediated damage to the hERG channel depended on the down-regulation of protein levels but not the alteration of channel kinetics. These discoveries indicated that high glucose likely disrupted hERG channel trafficking. From the western blot and immunoprecipitation analyses, we found that high glucose induced trafficking inhibition through an effect on the expression of Hsp90 and its interaction with hERG. Furthermore, the high-glucose-induced inhibition of hERG channel trafficking could activate the unfolded protein response (UPR by up-regulating the expression levels of activating transcription factor-6 (ATF-6 and the ER chaperone protein calnexin. In addition, we demonstrated that 100 nM insulin up-regulated the expression of the hERG channel and rescued the hERG channel repression caused by high glucose. Conclusion: The results of our study provide the first evidence of a high-glucose-induced hERG channel deficiency resulting from the inhibition of channel trafficking. Furthermore, insulin promotes the expression of the hERG channel

  6. High yield purification of full-length functional hERG K+ channels produced in Saccharomyces cerevisiae

    DEFF Research Database (Denmark)

    Molbaek, Karen; Scharff-Poulsen, Peter; Hélix-Nielsen, Claus

    2015-01-01

    The hERG potassium channel is essential for repolarization of the cardiac action potential. Due to this vital function, absence of unintended and potentially life-threatening interactions with hERG is required for approval of new drugs. The structure of hERG is therefore one of the most sought......-after. To provide purified hERG for structural studies and new hERG biomimetic platforms for detection of undesirable interactions, we have developed a hERG expression platform generating unprecedented amounts of purified and functional hERG channels. Full-length hERG, with or without a C-terminally fused green......-hemisuccinate and Astemizole resulted in a monodisperse elution profile demonstrating a high quality of the hERG channels. hERG-GFP-His(8) purified by Ni-affinity chromatography maintained the ability to bind Astemizole with the correct stoichiometry indicating that the native, tetrameric structure was preserved. To our...

  7. Influence green sand system by core sand additions

    Directory of Open Access Journals (Sweden)

    N. Špirutová

    2012-01-01

    Full Text Available Today, about two thirds of iron alloys casting (especially for graphitizing alloys of iron are produced into green sand systems with usually organically bonded cores. Separation of core sands from the green sand mixture is very difficult, after pouring. The core sand concentration increase due to circulation of green sand mixture in a closed circulation system. Furthermore in some foundries, core sands have been adding to green sand systems as a replacement for new sands. The goal of this contribution is: “How the green sand systems are influenced by core sands?”This effect is considered by determination of selected technological properties and degree of green sand system re-bonding. From the studies, which have been published yet, there is not consistent opinion on influence of core sand dilution on green sand system properties. In order to simulation of the effect of core sands on the technological properties of green sands, there were applied the most common used technologies of cores production, which are based on bonding with phenolic resin. Core sand concentration added to green sand system, was up to 50 %. Influence of core sand dilution on basic properties of green sand systems was determined by evaluation of basic industrial properties: moisture, green compression strength and splitting strength, wet tensile strength, mixture stability against staling and physical-chemistry properties (pH, conductivity, and loss of ignition. Ratio of active betonite by Methylene blue test was also determined.

  8. Utility of hERG assays as surrogate markers of delayed cardiac repolarization and QT safety.

    Science.gov (United States)

    Gintant, Gary A; Su, Zhi; Martin, Ruth L; Cox, Bryan F

    2006-01-01

    HERG (human-ether-a-go-go-related gene) encodes for a cardiac potassium channel that plays a critical role in defining ventricular repolarization. Noncardiovascular drugs associated with a rare but potentially lethal ventricular arrhythmia (Torsades de Pointes) have been linked to delayed cardiac repolarization and block of hERG current. This brief overview will discuss the role of hERG current in cardiac electrophysiology, its involvement in drug-induced delayed repolarization, and approaches used to define drug effects on hERG current. In addition, examples of hERG blocking drugs acting differently (i.e., overt and covert hERG blockade due to multichannel block) together with the utility and limitations of hERG assays as tools to predict the risk of delayed repolarization and proarrhythmia are discussed.

  9. Structure and Function of the Splice Variants of TMPRSS2-ERG, a Prevalent Genomic Alteration in Prostate Cancer

    Science.gov (United States)

    2009-09-01

    Characterization of full length sequences of TMPRSS2-ERG transcripts in prostate cancer was addressed. • CPDR CaP library screening was performed with ERG...by prostate cancer library screening using human TMPRSS2 and ERG cDNA fragments as probes. Type I, which encodes full-length ERG protein consisting...their ratios with clinicopathological stages. Results: We identified two types of TMPRSS2-ERG cDNAs by prostate cancer library screening using human

  10. Sands cykliske styrke

    DEFF Research Database (Denmark)

    Ibsen, Lars Bo

    1992-01-01

    Sands cykliske styrke kan beskrives ved Cyclic Liquefaction, Mobilisering, Stabilization og Instant Stabilization. I artiklen beskrives hvorfor Stabilization og Instant Stabilization ikke observeres, når sands udrænede styrke undersøges i triaxial celler, der anvender prøver med dobbelt prøvehøjde....

  11. Baskarp Sand No. 15

    DEFF Research Database (Denmark)

    Ibsen, Lars Bo; Bødker, Lars Bødker

    The Soil Mechanics Laboratory has started performing tests with a new sand, Baskarp No 15. Baskarp No 15 is a graded sand from Sweden. The shapes of the largest grains are round, while the small grains have sharp edges. The main part of of Baskarp No 15 is quarts, but it also contains feldspar...

  12. Temporal analysis of the topographic ERG: chromatic versus achromatic stimulation.

    Science.gov (United States)

    Klistorner, A; Crewther, D P; Crewther, S G

    1998-04-01

    The topographic electroretinogram evoked by multi-focal exchange of black and white or red and green stimuli was analysed into linear and non-linear Wiener kernels. The first-order (temporally linear) response showed a biphasic waveform which inverted as the luminance ratio of the exchanged colours passed through unity (established both psychophysically and photometrically). A short latency non-linearity which was dependant on luminance contrast was observed in both chromatic and achromatic ERG. However, in the chromatic second-order response, a long-latency non-linearity, foveally prominent, with a distinct skew in power towards the nasal retina, appeared around the isoluminant point, between the points of silent substitution for the L and M-cone types. Modelling of the second-order responses showed that over a wide range of luminance ratios, the chromatic ERG is well described by a linear combination of the achromatic (contrast-dependent) component and the response at isoluminance. The difference in second-order response between coloured and black and white stimulation, at the same luminance contrast, showed that the long-latency non-linearity is recorded when the red and green cone types are operating out of phase and peaks in amplitude at a green/red luminance ratio of 0.8. This interpretation was confirmed by the lack of the long-latency non-linearity in colour-anomalous subjects (whether deficient in the L or the M-cone type). A marked similarity exists between the properties of the long-latency non-linearity and the frequency-doubled response generated in the ganglion cells of the magnocellular pathway.

  13. Children with complete or incomplete congenital stationary night blindness: ophthalmological findings, standard ERGs and ON-OFF ERGs for differentiation between types

    Directory of Open Access Journals (Sweden)

    Maja Šuštar

    2012-06-01

    Conclusion: Distinct electrophysiological characteristics can be used to differentiate between complete and incomplete CSNB. Moreover, ONOFF ERGs are important for precise localization of the retinal bipolar cell dysfunction, and these can also be reliably recorded in children.

  14. Loss of PTEN Is Associated with Aggressive Behavior in ERG-Positive Prostate Cancer

    Science.gov (United States)

    Leinonen, Katri A.; Saramäki, Outi R.; Furusato, Bungo; Kimura, Takahiro; Takahashi, Hiroyuki; Egawa, Shin; Suzuki, Hiroyoshi; Keiger, Kerri; Hahm, Sung Ho; Isaacs, William B.; Tolonen, Teemu T.; Stenman, Ulf-Håkan; Tammela, Teuvo L.J.; Nykter, Matti; Bova, G. Steven; Visakorpi, Tapio

    2014-01-01

    Background The associations of ERG overexpression with clinical behavior and molecular pathways of prostate cancer are incompletely known. We assessed the association of ERG expression with AR, PTEN, SPINK1, Ki-67, and EZH2 expression levels, deletion, and mutations of chromosomal region 3p14 and TP53, and clinicopathologic variables. Methods The material consisted of 326 prostatectomies, 166 needle biopsies from men treated primarily with endocrine therapy, 177 transurethral resections of castration-resistant prostate cancers (CRPC), and 114 CRPC metastases obtained from 32 men. Immunohistochemistry, FISH, and sequencing was used for the measurements. Results ERG expression was found in about 45% of all patient cohorts. In a multivariate analysis, ERG expression showed independent value of favorable prognosis (P = 0.019). ERG positivity was significantly associated with loss of PTEN expression in prostatectomy (P = 0.0348), and locally recurrent CRPCs (P = 0.0042). Loss of PTEN expression was associated (P = 0.0085) with shorter progression-free survival in ERG-positive, but not in negative cases. When metastases in each subject were compared, consistent ERG, PTEN, and AR expression as well as TP53 mutations were found in a majority of subjects. Conclusions A similar frequency of ERG positivity from early to late stage of the disease suggests lack of selection of ERG expression during disease progression. The prognostic significance of PTEN loss solely in ERG-positive cases indicates interaction of these pathways. The finding of consistent genetic alterations in different metastases suggests that the major genetic alterations take place in the primary tumor. Impact Interaction of PTEN and ERG pathways warrants further studies. PMID:24083995

  15. Sedimentological evolution, diagenesis and hydrocarbon potentiality of late Jurassic carbonates, Eastern Region, Yemen Arab Republic

    Energy Technology Data Exchange (ETDEWEB)

    El-anbaawy, M.I.H.; Al-thour, K.A. (Dept. of Geology, Faculty of Science, Cairo Univ., Giza (EG))

    1989-01-01

    On the basis of the lateral and vertical distribution of the lithofacies identified within the Late Jurassic Amran sequence (Thoma Member) in Jabal Al-Balaq area, Marib, Y.A.R., three megafacies were recognized. Proceeding from the shore landwards they are: Ooid bank, including barriers such as reefs and carbonate sand shoals adjacent to the margin of a shallow platform having intertidal to subtidal agitated water, the bank being composed of skeletal packstone, oolitic grainstone and oncolitic packstone; Shelf lagoon, behind the shoal, characterized by less turbulent pelletoidal wackestone, sandy mudstone and algal stromatolite (boundstone); Alluvial coastal plain, including tidal sand flat of the marine shoreline-intertidal area, where cross-bedded sandstone and alluvial fan toe conglomerate were deposited. The apparent small-scale facies variations which are the result of the allocyclic tectonically controlled sea level fluctuations, reflect a complex interfingering of the depositional environments and the resulting rock types. The paragenetic sequence of the post-depositional processes within the siliciclastics inferred is: iron oxide cementation, authigenic growth of mica clays, generation of pressure solution and compaction, and generation of quartz overgrowths. It is indicated that the compaction process followed the neomorphism and cementation within the carbonates.

  16. Schmeissneria: An angiosperm from the Early Jurassic

    Institute of Scientific and Technical Information of China (English)

    Xin WANG

    2010-01-01

    The origin of angiosperms has been a focus of intensive research for a long time. The so-called preCretaceous angiosperms, including Schmeissneria, are usually clouded with doubt. To expel the cloud around the enigmatic Schmeissneria, the syntype and new materials of Schmeissneria collected previously in Germany and recently in China are studied. These materials include female inflorescences and infructescences. The latter are old materials but were under-studied previously. Light microscopy and scanning electron microscope observations indicate that the fruits in these infructescences have in situ seeds enclosed, and that the ovaries are closed before pollination. Thus the plants meet two strict criteria for angiosperms: angiospermy plus angio-ovuly. Placing Schmeissneria in angiosperms will extend the record of angiosperms up to the Early Jurassic, more compatible with many molecular dating conclusions on the age of angiosperms, and demanding a reassessment of the current doctrines on the origin of angiosperms. Although the phylogenetic relationship of Schmeissneria to other angiosperms apparently is still an open question, this study adds to research concerning the origin of angiosperms.

  17. IL-6 Overexpression in ERG-Positive Prostate Cancer Is Mediated by Prostaglandin Receptor EP2.

    Science.gov (United States)

    Merz, Constanze; von Mässenhausen, Anne; Queisser, Angela; Vogel, Wenzel; Andrén, Ove; Kirfel, Jutta; Duensing, Stefan; Perner, Sven; Nowak, Michael

    2016-04-01

    Prostate cancer is the most diagnosed cancer in men and multiple risk factors and genetic alterations have been described. The TMPRSS2-ERG fusion event and the overexpression of the transcription factor ERG are present in approximately 50% of all prostate cancer patients, however, the clinical outcome is still controversial. Prostate tumors produce various soluble factors, including the pleiotropic cytokine IL-6, regulating cellular processes such as proliferation and metastatic segregation. Here, we used prostatectomy samples in a tissue microarray format and analyzed the co-expression and the clinicopathologic data of ERG and IL-6 using immunohistochemical double staining and correlated the read-out with clinicopathologic data. Expression of ERG and IL-6 correlated strongly in prostate tissue samples. Forced expression of ERG in prostate tumor cell lines resulted in significantly increased secretion of IL-6, whereas the down-regulation of ERG decreased IL-6 secretion. By dissecting the underlying mechanism in prostate tumor cell lines we show the ERG-mediated up-regulation of the prostanoid receptors EP2 and EP3. The prostanoid receptor EP2 was overexpressed in human prostate cancer tissue. Furthermore, the proliferation rate and IL-6 secretion in DU145 cells was reduced after treatment with EP2-receptor antagonist. Collectively, our study shows that the expression of ERG in prostate cancer is linked to the expression of IL-6 mediated by the prostanoid receptor EP2.

  18. Relationship between antifungal resistance of fluconazole resistant Candida albicans and mutations in ERG11 gene

    Institute of Scientific and Technical Information of China (English)

    FENG Li-juan; WAN Zhe; WANG Xiao-hong; LI Ruo-yu; LIU Wei

    2010-01-01

    Background The cytochrome P450 lanosterol 14α-demethylase(Erg11p) encoded by ERG11 gene is the primary target for azole antifungals.Changes in azole affinity of this enzyme caused by amino acid substitutions have been reported as a mechanism of azole antifungal resistance. This study aimed to investigate the relationship between amino acid substitutions in Erg11p from fluconazole resistant Candida albicans (C.albicans)isolates and their cross-resistance to azoles.Methods Mutations in ERG11 gene were screened in 10 clinical isolates of fluconazole resistant C.albicans strains.DNA sequence of ERG11 was determined by PCR based DNA sequencing.Results In the 10 isolates,19 types of amino acid substitutions were found,of which 10 substitutions (F72S, F103L, F145I, F198L, G206D, G227D, N349S, F416S, F422L and T482A) have not been reported previously. Mutations in ERG11 gene were detected in 9 isolates of fluconazole resistant C. albicans, but were not detected in 1 isolate. Conclusions Although no definite correlation was found between the type of amino acid substitutions in Erg11p and the phenotype of cross-resistance to azoles, the substitutions F72S, F145I and G227D in our study may be highly associated with resistance to azoles because of their special location in Erg11p.

  19. Noninvasive Detection of TMPRSS2:ERG Fusion Transcripts in the Urine of Men with Prostate Cancer

    Directory of Open Access Journals (Sweden)

    Bharathi Laxman

    2006-10-01

    Full Text Available We recently reported the identification of recurrent gene fusions in the majority of prostate cancers involving the 5V untranslated region of the androgenregulated gene TMPRSS2, the ETS family members ERG, ETV1, ETV4. Here we report the noninvasive detection of these gene fusions in the urine of patients with clinically localized prostate cancer. By quantitative polymerase chain reaction, we assessed the expression of ERG, TMPRSS2:ERG transcripts in urine samples obtained after prostatic massage from 19 patients (11 prebiopsy, 8 pre-radical prostatectomy with prostate cancer. We observed a strong concordance between ERG overexpression, TMPRSS2:ERG expression, with 8 of 19 (42% patients having detectable TMPRSS2:ERG transcripts in their urine. Importantly, by fluorescence in situ hybridization, we confirmed the presence or the absence of TMPRSS2:ERG gene fusions in matched prostate cancer tissue samples from three of three patients with fusion transcripts in their urine, from two of two patients without fusion transcripts in their urine. These results demonstrate that TMPRSS2:ERG gene fusions can be detected in the urine of patients with prostate cancer, support larger studies on prospective cohorts for noninvasive detection of prostate cancer.

  20. Clonal Evaluation of Prostate Cancer by ERG/SPINK1 Status to Improve Prognosis Prediction

    Science.gov (United States)

    2015-10-01

    SUBJECT TERMS Multiclonality, ERG, SPINK1, immunohistochemistry, active surveillance, prostate biopsy, prostatectomy 16. SECURITY CLASSIFICATION OF: 17...and in doing so, will increase the number of men eligible for active surveillance, enhancing the well-being of men with prostate cancer through...minimizing over- treatment and treatment-related side effects. KEYWORDS: Multiclonality, ERG, SPINK1, immunohistochemistry, active surveillance

  1. ERG Cooperates with Androgen Receptor in Regulating Trefoil Factor 3 in Prostate Cancer Disease Progression

    Directory of Open Access Journals (Sweden)

    David S. Rickman

    2010-12-01

    Full Text Available To elucidate the role of ETS gene fusions in castration-resistant prostate cancer (CRPC, we characterized the transcriptome of 54 CRPC tumor samples from men with locally advanced or metastatic disease. Trefoil factor 3 (TFF3 emerged as the most highly differentially regulated gene with respect to ERG rearrangement status and resistance to hormone ablation therapy. Conventional chromatin immunoprecipitation (ChIP-polymerase chain reaction and ChIP followed by DNA sequencing (ChIP-seq revealed direct binding of ERG to ETS binding sites in the TFF3 promoter in ERG-rearranged prostate cancer cell lines. These results were confirmed in ERG-rearranged hormone-naive prostate cancer (HNPC and CRPC tissue samples. Functional studies demonstrated that ERG has an inhibitory effect on TFF3 expression in hormone-naive cancer but not in the castration-resistant state. In addition, we provide evidence suggesting an effect of androgen receptor signaling on ERG-regulated TFF3 expression. Furthermore, TFF3 overexpression enhances ERG-mediated cell invasion in CRPC prostate cancer cells. Taken together, our findings reveal a novel mechanism for enhanced tumor cell aggressiveness resulting from ERG rearrangement in the castration-resistant setting through TFF3 gene expression.

  2. ERG cooperates with androgen receptor in regulating trefoil factor 3 in prostate cancer disease progression.

    Science.gov (United States)

    Rickman, David S; Chen, Ying-Bei; Banerjee, Samprit; Pan, Yihang; Yu, Jindan; Vuong, Terry; Perner, Sven; Lafargue, Christopher J; Mertz, Kirsten D; Setlur, Sunita R; Sircar, Kanishka; Chinnaiyan, Arul M; Bismar, Tarek A; Rubin, Mark A; Demichelis, Francesca

    2010-12-01

    To elucidate the role of ETS gene fusions in castration-resistant prostate cancer (CRPC), we characterized the transcriptome of 54 CRPC tumor samples from men with locally advanced or metastatic disease. Trefoil factor 3 (TFF3) emerged as the most highly differentially regulated gene with respect to ERG rearrangement status and resistance to hormone ablation therapy. Conventional chromatin immunoprecipitation (ChIP)-polymerase chain reaction and ChIP followed by DNA sequencing (ChIP-seq) revealed direct binding of ERG to ETS binding sites in the TFF3 promoter in ERG-rearranged prostate cancer cell lines. These results were confirmed in ERG-rearranged hormone-naive prostate cancer (HNPC) and CRPC tissue samples. Functional studies demonstrated that ERG has an inhibitory effect on TFF3 expression in hormone-naive cancer but not in the castration-resistant state. In addition, we provide evidence suggesting an effect of androgen receptor signaling on ERG-regulated TFF3 expression. Furthermore, TFF3 overexpression enhances ERG-mediated cell invasion in CRPC prostate cancer cells. Taken together, our findings reveal a novel mechanism for enhanced tumor cell aggressiveness resulting from ERG rearrangement in the castration-resistant setting through TFF3 gene expression.

  3. Sand and Gravel Deposits

    Data.gov (United States)

    Vermont Center for Geographic Information — This dataset is a statewide polygon coverage of sand, gravel, and stone resources. This database includes the best data available from the VT Agency of Natural...

  4. Sand and Gravel Operations

    Data.gov (United States)

    Department of Homeland Security — This map layer includes sand and gravel operations in the United States. These data were obtained from information reported voluntarily to the USGS by the aggregate...

  5. Vestled - Hvide Sande

    DEFF Research Database (Denmark)

    Juel-Christiansen, Carsten; Hesselbjerg, Marianne; Schønherr, Torben

    2009-01-01

    Værket Vestled i Hvide Sande præsenteret i sammenhæng af 1000 nutidige landskabsarkitektoniske arbejder fra hele verden, hvor hvert værk vises på én side......Værket Vestled i Hvide Sande præsenteret i sammenhæng af 1000 nutidige landskabsarkitektoniske arbejder fra hele verden, hvor hvert værk vises på én side...

  6. MECHANICAL REGENERATION OF SAND WASTE

    Directory of Open Access Journals (Sweden)

    D. I. Gnir

    2005-01-01

    Full Text Available The experimental activation of the sand regenerator of the firm SINTO is carried out at ОАО “MZOO". It is shown that sand grains are cleared from films of binding agents, that allows to use the treated sand for preparation of agglutinant and core sands.

  7. Mechanism and pharmacological rescue of berberine-induced hERG channel deficiency

    Directory of Open Access Journals (Sweden)

    Yan M

    2015-10-01

    Full Text Available Meng Yan,1 Kaiping Zhang,1 Yanhui Shi,1 Lifang Feng,1 Lin Lv,1 Baoxin Li1,2 1Department of Pharmacology, Harbin Medical University, 2State-Province Key Laboratory of Biopharmaceutical Engineering, Harbin, Heilongjiang, People’s Republic of China Abstract: Berberine (BBR, an isoquinoline alkaloid mainly isolated from plants of Berberidaceae family, is extensively used to treat gastrointestinal infections in clinics. It has been reported that BBR can block human ether-a-go-go-related gene (hERG potassium channel and inhibit its membrane expression. The hERG channel plays crucial role in cardiac repolarization and is the target of diverse proarrhythmic drugs. Dysfunction of hERG channel can cause long QT syndrome. However, the regulatory mechanisms of BBR effects on hERG at cell membrane level remain unknown. This study was designed to investigate in detail how BBR decreased hERG expression on cell surface and further explore its pharmacological rescue strategies. In this study, BBR decreases caveolin-1 expression in a concentration-dependent manner in human embryonic kidney 293 (HEK293 cells stably expressing hERG channel. Knocking down the basal expression of caveolin-1 alleviates BBR-induced hERG reduction. In addition, we found that aromatic tyrosine (Tyr652 and phenylalanine (Phe656 in S6 domain mediate the long-term effect of BBR on hERG by using mutation techniques. Considering both our previous and present work, we propose that BBR reduces hERG membrane stability with multiple mechanisms. Furthermore, we found that fexofenadine and resveratrol shorten action potential duration prolongated by BBR, thus having the potential effects of alleviating the cardiotoxicity of BBR. Keywords: berberine, hERG, cavoline-1, cardiotoxicity, LQTS, pharmacological rescue

  8. The Jurassic of Denmark and Greenland: Upper Jurassic – Lower Cretaceous of the Danish Central Graben: structural framework and nomenclature

    Directory of Open Access Journals (Sweden)

    Japsen, Peter

    2003-10-01

    Full Text Available The Danish Central Graben is part of the mainly Late Jurassic complex of grabens in the central and southern North Sea which form the Central Graben. The tectonic elements of the Danish Central Graben in the Late Jurassic are outlined and compared to those in the Early Cretaceous based on reduced versions of published maps (1:200 000, compiled on the basis of all 1994 public domain seismic and well data. The Tail End Graben, a half-graben which stretches for about 90 km along the East North Sea High, is the dominant Late Jurassic structural feature. The Rosa Basin (new name is a narrow, north-south-trending basin extending from the south-western part of the Tail End Graben. The Tail End Graben ceased to exist as a coherent structural element during the Early Cretaceous and developed into three separate depocentres: the Iris and Gulnare Basins to the north and the Roar Basin to the south (new names. The Early Cretaceous saw a shift from subsidence focused along the East North Sea High during the Late Jurassic to a more even distribution of minor basins within the Danish Central Graben. The depth to the top of the Upper Jurassic - lowermost Cretaceous Farsund Formation reaches a maximum of 4800 m in the northern part of the study area, while the depth to the base of the Upper Jurassic reaches 7500 m in the Tail End Graben, where the Upper Jurassic attains a maximum thickness of 3600 m. The Lower Cretaceous Cromer Knoll Group attains a maximum thickness of 1100 m in the Outer Rough Basin.

  9. Early Jurassic foraminiferal assemblages in platform carbonates of Mt. Krim, central Slovenia

    Directory of Open Access Journals (Sweden)

    Luka Gale

    2017-06-01

    Full Text Available During the Early Jurassic, the subtropical carbonate platforms of the peri-Tethys Ocean experienced signifiant changes in their architectures, as well as in their biota compositions. Shallow-water carbonates from the northern part of the ancient Adriatic Carbonate Platform (External Dinarides were investigated in six sections, which taken together cover the development of the platform from deposition of the uppermost Triassic Main Dolomite to the middle Lower Jurassic, lithiotid limestone. Our aim was to establish a detailed foraminiferal biostratigraphy and to observe the changes in size, abundance and diversity of foraminifera in different types of facies. As a result, the succession was successfully divided into stage or substage levels. Foraminiferal assemblages were shown to experience a gradual change in taxonomic composition (including an increase in the proportion of complex agglutinated forms, a general increase in abundance of specimens, and greater diversity in each facies type, except in bindstone and mudstone. Notable is the difference between Hettangian assemblages, which display fairly uniform compositions in all facies types and the predominance of opportunists, and the post-Hettangian assemblages, which become progressively more species-rich and where the differences in facies are perhaps more pronounced. Changes in the size of the species Meandrovoluta asiagoensis Fugagnoli & Rettori, and of the largest specimen in the assemblages, however, are less clear, but are arguably present. Faunal changes roughly correspond to the gradual change from the flt-top platform of the upper Triassic – Hettangian, where biota would be repeatedly subjected to stressed peritidal conditions, to a platform differentiated into lagoon, sand bars and ephemeral emergent areas, offering numerous habitats and perhaps more stable living conditions for organisms.

  10. Harvestmen (Arachnida: Opiliones) from the Middle Jurassic of China

    Science.gov (United States)

    Huang, Diying; Selden, Paul A.; Dunlop, Jason A.

    2009-08-01

    Harvestmen (Arachnida: Opiliones) are familiar animals in most terrestrial habitats but are rare as fossils, with only a handful of species known from each of the Palaeozoic, Mesozoic, and Cenozoic eras. Fossil harvestmen from Middle Jurassic (ca. 165 Ma) strata of Daohugou, Inner Mongolia, China, are described as Mesobunus martensi gen. et sp. nov. and Daohugopilio sheari gen. et sp. nov.; the two genera differ primarily in the relative length of their legs and details of the pedipalps. Jurassic arachnids are extremely rare and these fossils represent the first Jurassic, and only the fourth Mesozoic, record of Opiliones. These remarkably well-preserved and modern-looking fossils are assigned to the Eupnoi, whereby M. martensi demonstrably belongs in Sclerosomatidae. It thus represents the oldest record of a modern harvestman family and implies a high degree of evolutionary stasis among one of the most widespread and abundant groups of long-legged, round-bodied harvestmen.

  11. Bituminous sands : tax issues

    Energy Technology Data Exchange (ETDEWEB)

    Patel, B. [PricewaterhouseCoopers LLP, Calgary, AB (Canada)

    2004-07-01

    This paper examined some of the tax issues associated with the production of bitumen or synthetic crude oil from oil sands. The oil sands deposits in Alberta are gaining more attention as the supplies of conventional oil in Canada decline. The oil sands reserves located in the Athabasca, Cold Lake and Peace River areas contain about 2.5 trillion barrels of highly viscous hydrocarbons called bitumen, of which nearly 315 billion barrels are recoverable with current technology. The extraction method varies for each geographic area, and even within zones and reservoirs. The two most common extraction methods are surface mining and in-situ extraction such as cyclic steam stimulation (CSS); low pressure steam flood; pressure cycle steam drive; steam assisted gravity drainage (SAGD); hot water flooding; and, fire flood. This paper also discussed the following general tax issues: bituminous sands definition; bituminous sands leases and Canadian development expense versus Canadian oil and gas property expense (COGPE); Canadian exploration expense (CEE) for surface mining versus in-situ methods; additional capital cost allowance; and, scientific research and experimental development (SR and ED). 15 refs.

  12. A complicated story of frost and wind: Present-day gully activity within the north polar erg, Mar

    Science.gov (United States)

    Diniega, Serina; Hansen, Candice; Allen, Amanda; Grisby, Nathan; Li, Zheyu Joey

    2016-10-01

    Analyses of high-resolution observations have shown that the dunes within the martian north polar erg (AKA Olympia Undae) are currently very active on seasonal and yearly timescales, with 20-60% of the dunes within five polar dune fields undergoing the formation of alcove-apron features each Mars year. Previous studies have hypothesized formation mechanisms, based on observations of when new alcove and alcove-apron features form within an individual field through one Mars year. However, results are ill-constrained (and thus different hypotheses have been proposed) as the polar hood and winter night mean very few images are taken during the actual period of activity. In this study, we mitigate this limitation by examining several fields over several Mars years -- thus bringing aggregated results as well as detailed correlation checks against environmental conditions and seasonal processes to bear on the problem. From this, we propose a new process that appears consistent with all observations: (1) small alcoves form along the dune brink in the autumn (under the polar hood) due to instabilities induced by the night-formation and morning-sublimation of frost. As autumn progresses, the seasonal frost layer builds over the altered dune slope. (2) In the early spring, sublimation activity is concentrated and/or enhanced over these alcoves, causing further erosion and the formation of larger alcove-apron features. From the planform dimensions of the newly formed alcoves, we can estimate the volume of sand moved down the dune slope during one period of activity and estimate the aeolian sediment flux by looking at how quickly the alcoves are erased. We find that, over a Mars year, the amount of material moved via alcove-apron activity and via the wind are both comparable to aeolian sand flux estimates over dunes within lower-latitude regions of Mars. Thus it appears that the formation of alcoves-aprons is a significant mechanism for dune advancement and evolution within the

  13. hERG1 channels drive tumour malignancy and may serve as prognostic factor in pancreatic ductal adenocarcinoma

    Science.gov (United States)

    Lastraioli, E; Perrone, G; Sette, A; Fiore, A; Crociani, O; Manoli, S; D'Amico, M; Masselli, M; Iorio, J; Callea, M; Borzomati, D; Nappo, G; Bartolozzi, F; Santini, D; Bencini, L; Farsi, M; Boni, L; Di Costanzo, F; Schwab, A; Onetti Muda, A; Coppola, R; Arcangeli, A

    2015-01-01

    Background: hERG1 channels are aberrantly expressed in human cancers. The expression, functional role and clinical significance of hERG1 channels in pancreatic ductal adenocarcinoma (PDAC) is lacking. Methods: hERG1 expression was tested in PDAC primary samples assembled as tissue microarray by immunohistochemistry using an anti-hERG1 monoclonal antibody (α-hERG1-MoAb). The functional role of hERG1 was studied in PDAC cell lines and primary cultures. ERG1 expression during PDAC progression was studied in Pdx-1-Cre,LSL-KrasG12D/+,LSL-Trp53R175H/+ transgenic (KPC) mice. ERG1 expression in vivo was determined by optical imaging using Alexa-680-labelled α-hERG1-MoAb. Results: (i) hERG1 was expressed at high levels in 59% of primary PDAC; (ii) hERG1 blockade decreased PDAC cell growth and migration; (iii) hERG1 was physically and functionally linked to the Epidermal Growth Factor-Receptor pathway; (iv) in transgenic mice, ERG1 was expressed in PanIN lesions, reaching high expression levels in PDAC; (v) PDAC patients whose primary tumour showed high hERG1 expression had a worse prognosis; (vi) the α-hERG1-MoAb could detect PDAC in vivo. Conclusions: hERG1 regulates PDAC malignancy and its expression, once validated in a larger cohort also comprising of late-stage, non-surgically resected cases, may be exploited for diagnostic and prognostic purposes in PDAC either ex vivo or in vivo. PMID:25719829

  14. The second Jurassic dinosaur rush and the dawn of dinomania.

    Science.gov (United States)

    Brinkman, Paul D

    2010-09-01

    During the second Jurassic dinosaur rush museum paleontologists raced to display the world's first mounted sauropod dinosaur. The American Museum of Natural History triumphed in 1905 when its Brontosaurus debuted before an admiring crowd of wealthy New Yorkers. The Carnegie Museum of Natural History in Pittsburgh, the Field Columbian Museum in Chicago and other institutions were quick to follow with their own sauropod displays. Thereafter, dinomania spread far and wide, and big, showpiece dinosaurs became a museum staple. This brief but intensely competitive period of acquisitiveness fostered important Jurassic dinosaur revisions and crucial innovations in paleontological field and lab techniques.

  15. Jurassic domes in the North Sea - northern North Atlantic region

    Energy Technology Data Exchange (ETDEWEB)

    Surlyk, F. [Univ. of Copenhagen, Geological Inst., Copenhagen (Denmark)

    1996-12-31

    The stratigraphic and tectonic evolution of the Jurassic of East Greenland, the Norwegian Shelf and the North Sea is remarkably similar. A major Middle Jurassic unconformity occurs in all three areas. In the North Sea it is commonly termed the `Mid-Cimmerian Unconformity` and is characterized by progressive truncation of the underlying section towards a centre at the triple junction between the Central Graben, Viking Graben and Moray Firth. Strata above the unconformity show a progressive Late Aalenian-Early Kimmeridgian onlap in the same direction. These relations have been interpreted as caused by Early Jurassic uplift and of a major thermal dome in the central North Sea, followed by Medial and Late Jurassic rifting, erosion, deflation and transgression of the dome. The East Greenland unconformity shows progressive truncation of underlying strata from south to north, and Bajocian to Callovian onlap in the same direction. The same pattern seems to be developed on the conjugate Norwegian margin. This suggests the possibility that the three unconformities have similar causes for their development. It is proposed that major rift domes formed in the Central North Sea and in the Greenland-Norway seaway in Early Jurassic times. The domes were eroded and gradually deflated during Medial Jurassic times and were finally submerged by the Late Oxfordian-Kimmeridgian. They were associated with volcanism and rifting which was delayed with respect to dome initiation. Roughly contemperaneous domes were present west of Britain, north of the Porcupine Seabight, and in Scania, southern Sweden, as reflected by development of asymmetrical unconformities showing progressive truncation of underlying strata, onlap of overlying Jurassic strata, and associated intrusive and extrusive volcanism. The domes are related to impingement of the heads of transient mantle plumes at the base of the lithosphere. The associated unconformities are thus of non-eustatic nature. Domal uplift and

  16. Trachyteuthis covacevichi n. sp., a Late Jurassic Palaeopacific coleoid cephalopod

    Directory of Open Access Journals (Sweden)

    D. Fuchs

    2008-02-01

    Full Text Available A new early Oxfordian coleoid cephalopod, Trachyteuthis covacevichi n. sp., is described from northern Chile. It represents the first Late Jurassic Palaeopacific vampyropod and thus considerably extends the palaeogeographic distribution of trachyteuthids. In general, Tr. covacevichi n. sp. possesses a gladius typical for the genus, but wider than in other species. Similarities between Tr. covacevichi n. sp., Tr. palmeri from the Oxfordian of Cuba and Tr. sp. from the Kimmeridgian of Europe confirm a Caribbean Seaway between the Tethys and the Palaeopacific during Late Jurassic times. Morphologically, the wide gladius of Tr. covacevichi n. sp. supports a close phylogenetic relationship between Teudopsis and Trachyteuthis. doi:10.1002/mmng.200700012

  17. Jurassic Tectonics of North China: A Synthetic View

    Institute of Scientific and Technical Information of China (English)

    ZHANG Yueqiao; DONG Shuwen; ZHAO Yue; ZHANG Tian

    2008-01-01

    This paper gives a synthetic view on the Jurassic tectonics of North China, with an attempt to propose a framework for the stepwise tectonic evolution history. Jurassic sedimentation, deformation and magmatism in North China have been divided into three stages. The earliest Jurassic is marked by a period of magmatism quiescence (in 205-190 Ma) and regional uplift, which are considered to be the continuation of the "Indosinian movement" characterized by continent-continent collision between the North and South China blocks. The Early to Middle Jurassic (in 190-170 Ma) was predominated by weak lithospheric extension expressed by mantle-derived plutonism and volcanism along the Yanshan belt and alongside the Tan-Lu fault zone, normal faulting and graben formation along the Yinshan-Yanshan tectonic belt, depression and resuming of coal-bearing sedimentation in vast regions of the North China block (NCB). The Middle to Late Jurassic stage started at 165,.5 Ma and ended up before 136 Ma; it was dominated by intensive intraplate deformation resulting from multi-directional compressions. Two major deformation events have been identified. One is marked by stratigraphic unconformity beneath the thick Upper Jurassic molasic series in the foreland zones of the western Ordos thrust-fold belt and along the Yinshan-Yanshan belt; it was predated 160 Ma. The other one is indicated by stratigraphic unconformity at the base of the Lower Cretaceous and predated 135 Ma. During this last stage, two latitudinal tectonic belts, the Yinshan-Yanshan belt in the north and the Qinling-Dabie belt in the south, and the western margin of the Ordos basin were all activated by thrusting; the NCB itself was deformed by the NE to NNE-trending structural system involving thrusting, associated folding and sinistral strike-slip faulting, which were spatially partitioned. Foliated S-type granitic plutons aged 160-150 Ma were massively emplaced in the Jiao-Liao massif east of the Tan-Lu fault zone and

  18. High yield purification of full-length functional hERG K+ channels produced in Saccharomyces cerevisiae

    DEFF Research Database (Denmark)

    Molbaek, Karen; Scharff-Poulsen, Peter; Hélix-Nielsen, Claus;

    2015-01-01

    knowledge this is the first reported high-yield production and purification of full length, tetrameric and functional hERG. This significant breakthrough will be paramount in obtaining hERG crystal structures, and in establishment of new high-throughput hERG drug safety screening assays....

  19. Evaluating the Efficacy of ERG Targeted Therapy In Vivo for Prostate Tumors

    Science.gov (United States)

    2013-04-01

    single oncogene mice to genetically analyze cooperation in vivo. Investigate using molecular techniques if ERG modulates proliferation, apoptosis and... breeding between our tetO-ERG mice and Dr. Bieberich’s Hoxb13-rtTA mice will be initiated shortly. We will reinitiate our studies on the ability of ERG...If adding animals or procedures to category D or E for the first time. please see "Modify Pain Category"’ below. Number R8Q(Ifl$tfld Pain Cat ~tgory

  20. Lund Sand No 0

    DEFF Research Database (Denmark)

    Ibsen, Lars Bo; Jakobsen, Finn Rosendal

    During the last 15 years the Geotechnical Engineering Group (GEG) at Aalborg University has performed triaxial tests with a sand called Lund No 0. Lund No 0 is a graded sand from a gravel pit near Horsens in Denmark. For the classification of the sand the following tests have been performed: Sieve...... test, Grain density, ds, Maximum, emax, and minimum, emin, void ratio. The strength parameters of Lund No 0 are detennined by some drained and undrained triaxial tests in the Danish Triaxial Cell. The Danish Triaxial Cell prescribes smooth pressure heads and specimens with equal height and diameter....... Four series with Id equal to 0.92, 0.87 0.76 and 0.55 have been performed....

  1. UK Frac Sand Resources

    OpenAIRE

    Mitchell, C J

    2015-01-01

    Although still just a glimmer in the gas man’s eye, the prospect of shale hydrocarbon (oil and gas) development in the UK has many companies thinking about the industrial minerals it will require. Chief amongst these is silica sand which is used as a ‘proppant’ in the hydraulic fracturing, or ‘fracking’, of shales to help release the gas. The UK has large resources of sand and sandstone, of which only a small proportion have the necessary technical properties that classify them as ‘silica san...

  2. Detection of ERG11 mutations in clinical isolates of Candida albicans resistant to fluconazole%耐氟康唑白念珠菌临床株ERG11基因突变检测

    Institute of Scientific and Technical Information of China (English)

    徐永豪; 陈腊梅; 李春阳

    2008-01-01

    Objeetive To detect ERG11 gene mutations in clinical isolares of Candida albicans resistant to fluconazole.and discuss their relationship with formation of drug resistance.Methods Clinical specimens were collected.CHROMagar mediuln and amplification of the fragment spanning the conserved sequence of 25S rDNA including some transposable introns.were used to identify subtype Candida albicans isolates.FIuconazole sensitivity was detected in vitro through microdilution and Rosco tablets.The other three fragment of ERG11 gene were amplified and followed by sequencing with resistant type strain ATCC 76615-19 and Candida albicans Darlington strain with two sensitive isolates as controh.Results Fifteen resistant isolates of Candida albicans were found,all of which were type A.Sixteen silent mutations and 11 missense mutations were detected.Mutations in ATCC 76615-19 and Darlington strain were same with what had been reported.In the 2 sensitive strains.G640A(E165K),A945C(E266D)and G1609A/G(V488I)occurred,as well as the other 9 silent mutations.Only G487T(A114S)and T916C(Y257H)existed in each of 14 resistant isolates.In the other one resistant isolate,T541C(Y132H),T495A(D116E),A530C (K128T)and T1493A(F449Y)occurred Mong with 8 silent mutations.Conclusions The occurrence of G487T(A114S)and 1916C(Y257H)in 14 isolates from different sources suggested they may involve in fluconazole resistance.The novel mutation T1493A(F449Y)can appear in resistant isolves of Candida albicans.%目的 筛查耐氟康唑白念珠菌ERG11基因突变,探讨其与耐药的关系.方法 用柯玛嘉显色培养基和25S rDNA转座内含子保守区分型方法,收集鉴定白念珠菌临床株.联用微量稀释法和Rosco药敏纸片扩散法体外测定试验菌株对氟康唑的敏感性.以ERG11序列明确的白念珠菌标准耐药株ATCC 76615-19和达令顿株为质控,以标准敏感株C1b和临床敏感株02928为对照,分3段扩增临床耐药株ERG11基因并测序.结果 获得15株A

  3. A toxin to nervous, cardiac, and endocrine ERG K+ channels isolated from Centruroides noxius scorpion venom.

    Science.gov (United States)

    Gurrola, G B; Rosati, B; Rocchetti, M; Pimienta, G; Zaza, A; Arcangeli, A; Olivotto, M; Possani, L D; Wanke, E

    1999-05-01

    Toxins isolated from a variety of venoms are tools for probing the physiological function and structure of ion channels. The ether-a-go-go-related genes (erg) codify for the K+ channels (ERG), which are crucial in neurons and are impaired in human long-QT syndrome and Drosophila 'seizure' mutants. We have isolated a peptide from the scorpion Centruroides noxius Hoffmann that has no sequence homologies with other toxins, and demonstrate that it specifically inhibits (IC50=16+/-1 nM) only ERG channels of different species and distinct histogenesis. These results open up the possibility of investigating ERG channel structure-function relationships and novel pharmacological tools with potential therapeutic efficacy.

  4. Obesity and Prostate Cancer Risk According to Tumor TMPRSS2:ERG Gene Fusion Status

    National Research Council Canada - National Science Library

    Egbers, Lieke; Luedeke, Manuel; Rinckleb, Antje; Kolb, Suzanne; Wright, Jonathan L; Maier, Christiane; Neuhouser, Marian L; Stanford, Janet L

    2015-01-01

    ...) with the erythroblast transformation-specific (ETS)-related gene (ERG), is found in approximately 50% of prostate cancers and may characterize distinct molecular subtypes of prostate cancer with different etiologies...

  5. Building with Sand

    Science.gov (United States)

    Ashbrook, Peggy

    2010-01-01

    Children playing in damp sand invariably try to make a tower or a tunnel. By providing experiences with a variety of materials, alone and together, teachers set up the conditions for children to learn through their senses and ensure that a class approaches a topic with a common set of experiences to build on. Learning about the properties of…

  6. Faraday, Jets, and Sand

    NARCIS (Netherlands)

    Sandtke, M.; van der Meer, Roger M.; Versluis, Andreas Michel; Lohse, Detlef

    2003-01-01

    When a 6-mm layer of fine sand with an average grain size of 40 µm is poured into a cylindrical container and shaken vertically, thin jets are seen to emerge from an airy cloud of grains, almost like protuberances from the corona of the sun. A quasi two-dimensional setup reveals the jet-formation

  7. Building with Sand

    Science.gov (United States)

    Ashbrook, Peggy

    2010-01-01

    Children playing in damp sand invariably try to make a tower or a tunnel. By providing experiences with a variety of materials, alone and together, teachers set up the conditions for children to learn through their senses and ensure that a class approaches a topic with a common set of experiences to build on. Learning about the properties of…

  8. Speleothems and Sand Castles

    Science.gov (United States)

    Hance, Trevor; Befus, Kevin

    2015-01-01

    The idea of building sand castles evokes images of lazy summer days at the beach, listening to waves crash, enjoying salty breezes, and just unplugging for a while to let our inner child explore the wonderful natural toys beneath our feet. The idea of exploring caves might evoke feelings and images of claustrophobia or pioneers and Native…

  9. Virksomhedens sande ansigt

    DEFF Research Database (Denmark)

    Lundholt, Marianne Wolff

    2017-01-01

    Er modhistorier en byrde eller en styrke i forandringsprocesser? Hvad stiller vi op, når adgangen til organisationens sande identitet går gennem medarbejdernes modhistorier? Når vi sammenholder denne erkendelse med vores viden om, at medarbejdere helt naturligt afholder sig fra at videregive disse...

  10. Sand (CSW4)

    CSIR Research Space (South Africa)

    Estuarine and Coastal Research Unit

    1982-12-01

    Full Text Available This report is one of a series on Cape Estuaries being published under the general title "The Estuaries of the Cape, Part 2". The report provides information on sand estuary: historical background, abiotic and biotic characteristics. It is pointed...

  11. Sand supply to beaches

    Science.gov (United States)

    Aagaard, Troels

    2017-04-01

    In most cases, beaches and dunes are built by sand that has been transported onshore from the shoreface. While this has been known for a long time, we are still not able to quantitatively predict onshore sediment transport and sand supply to beaches. Sediment transport processes operating during brief, high-energy stormy conditions - when beaches erode and sand moves offshore - are fairly well known and they can be modelled with a reasonable degree of confidence. However, the slower onshore sand transport leading to beach recovery under low-to-moderate energy conditions - and the reason why beaches and dunes exist in the first place - is not yet well understood. This severely limits our capability to understand and predict coastal behaviour on long time scales, for example in response to changing sea level or wave conditions. This paper will discuss issues and recent developments in sediment transport measurement and prediction on the lower and upper shoreface and into the swash zone. The focus will be on the integration and upscaling of small-scale deterministic process measurements into parametric models that may increase modelling capabilities of coastal behaviour on larger temporal and spatial scales.

  12. Microstructures of Early Jurassic (Toarcian) shales of Northern Europe

    NARCIS (Netherlands)

    Houben, M.E.; Barnhoorn, A.; Wasch, L.; Trabucho-Alexandre, João; Peach, C.J.; Drury, M.R.

    2016-01-01

    The Toarcian (Early Jurassic) Posidonia Shale Formation is a possible unconventional gas source in Northern Europe and occurs within the Cleveland Basin (United Kingdom), the Anglo-Paris Basin (France), the Lower Saxony Basin and the Southwest Germany Basin (Germany), and the Roer Valley Graben, the

  13. Evidence for a Mid-Jurassic Adaptive Radiation in Mammals.

    Science.gov (United States)

    Close, Roger A; Friedman, Matt; Lloyd, Graeme T; Benson, Roger B J

    2015-08-17

    A series of spectacular discoveries have transformed our understanding of Mesozoic mammals in recent years. These finds reveal hitherto-unsuspected ecomorphological diversity that suggests that mammals experienced a major adaptive radiation during the Middle to Late Jurassic. Patterns of mammalian macroevolution must be reinterpreted in light of these new discoveries, but only taxonomic diversity and limited aspects of morphological disparity have been quantified. We assess rates of morphological evolution and temporal patterns of disparity using large datasets of discrete characters. Rates of morphological evolution were significantly elevated prior to the Late Jurassic, with a pronounced peak occurring during the Early to Middle Jurassic. This intense burst of phenotypic innovation coincided with a stepwise increase in apparent long-term standing diversity and the attainment of maximum disparity, supporting a "short-fuse" model of early mammalian diversification. Rates then declined sharply, and remained significantly low until the end of the Mesozoic, even among therians. This supports the "long-fuse" model of diversification in Mesozoic therians. Our findings demonstrate that sustained morphological innovation in Triassic stem-group mammals culminated in a global adaptive radiation of crown-group members during the Early to Middle Jurassic.

  14. Klukiopsis jurassica--A new Jurassic schizaeaceous fern from China

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    A new Jurassic schizaeaceous fern Klukiopsis jurassica gen. et sp. nov. from Yima, Henan Province, China is described. The new fern is characterized by the abaxial sori arranged in two rows, apical and complete annulus and more than 800 smooth trilete spores in each sorus.

  15. Jurassic Park as a Teaching Tool in the Chemistry Classroom.

    Science.gov (United States)

    Jollis, W. Gary, Jr.

    1996-01-01

    Describes how the science fiction novel "Jurassic Park" has been used to provide the focus for summate discussions among gifted high school students participating in a state-sponsored, science-intensive summer program. Discusses adaptations of this approach for use in chemistry classes from the high school to intermediate college level. (JRH)

  16. In situ Gymnosperm pollen from the Middle Jurassic of Yorkshire

    NARCIS (Netherlands)

    Konijnenburg-van Cittert, van Johanna H.A.

    1971-01-01

    In this paper the morphology of pollen grains yielded by male Gymnosperm fructifications from the Jurassic flora of Yorkshire is studied and discussed. Several new male fructifications were found and described: Hastystrobus gen. nov. was erected for male cones yielding the Eucommiidites type of poll

  17. Erosion phenomena in sand moulds

    Directory of Open Access Journals (Sweden)

    A. Chojecki

    2008-03-01

    Full Text Available Authors studicd the erosion phcnorncna in sand moulds pured with cast iron. Thc study comprises an evaluation of erosionresistance of thc three sands: grccn sand. sand bondcd with inorganic or organic bindcr. It was concluded that thc most resistant is [heclassic green sand with thc addition of 5 B coal dust. Resistance of the sand with organic binder is generally weak and dcvnds onkind of used raisin. Spccinl nztcntion was paid to the sands with no organic bindcr watcr glass and phospha~c. It was Sound that thcirrcsistance depends on dehydratation conditions. When the mould is stored in law humidity of atmosphcrc the very strong crosion canbe expected. It rcsul ts hrn thc micro fractures in the bridges of binders, joining the grains of the sable. This phcnomcna facilitates thetearing away of fragments of sand [tom the surface

  18. Biological and Genomic Differences of ERG Oncoprotein-Stratified Prostate Cancers from African and Caucasian Americans

    Science.gov (United States)

    2014-10-01

    patients. The objective of this proposal is to determine associations and racial differences of key clinico -pathologic features and SNPs for both ERG...AA men will be estimated. Regions in AA genomes that are enriched for European ancestry in cases with the fusion compared to cases without the...each point in the genome in AA men. Regions in AA genomes that are enriched for European ancestry in cases with the TMPRSS2-ERG fusion, compared to

  19. "Mitochondrial myopathy" or mitochondrial disease? EEG, ERG, VEP studies in 13 children.

    OpenAIRE

    Harden, A; Pampiglione, G.; Battaglia, A.

    1982-01-01

    Neurophysiological investigations (EEG, ERG, VEP) were carried out in 13 patients with proven "mitochondrial myopathy". There were nine girls and four boys. Varied abnormalities were seen in the EEGs of all cases, and in one patient unusual repetitive bursts of irregular slow waves and spikes were observed. The ERG was abnormal in five of the 12 cases tested, while the VEP (flash) was definitely abnormal in six out of these 12 cases. These neurophysiological findings suggest some involvement ...

  20. Biological Effects of TMPRSS2/ERG Fusion Isoforms in Human Prostate Cancer

    Science.gov (United States)

    2009-02-01

    TITLE: Biological Effects of TMPRSS2/ERG Fusion Isoforms in Human Prostate Cancer PRINCIPAL INVESTIGATOR: Jianghua Wang, M.D...6 JAN 2009 / / /4. TITLE AND SUBTITLE Biological Effects of TMPRSS2/ERG Fusion Isoforms in Human Prostate Cancer 5a. CONTRACT NUMBER W81XWH...quantitative RT-PCR arrays we have identified candidate mediators of these phenotypic effects . We propose to extend these studies to primary prostate epithelial

  1. Compilation and physicochemical classification analysis of a diverse hERG inhibition database

    Science.gov (United States)

    Didziapetris, Remigijus; Lanevskij, Kiril

    2016-12-01

    A large and chemically diverse hERG inhibition data set comprised of 6690 compounds was constructed on the basis of ChEMBL bioactivity database and original publications dealing with experimental determination of hERG activities using patch-clamp and competitive displacement assays. The collected data were converted to binary format at 10 µM activity threshold and subjected to gradient boosting machine classification analysis using a minimal set of physicochemical and topological descriptors. The tested parameters involved lipophilicity (log P), ionization (p K a ), polar surface area, aromaticity, molecular size and flexibility. The employed approach allowed classifying the compounds with an overall 75-80 % accuracy, even though it only accounted for non-specific interactions between hERG and ligand molecules. The observed descriptor-response profiles were consistent with common knowledge about hERG ligand binding site, but also revealed several important quantitative trends, as well as slight inter-assay variability in hERG inhibition data. The results suggest that even weakly basic groups (p K a zwitterions > neutrals > acids. Given its robust performance and clear physicochemical interpretation, the proposed model may provide valuable information to direct drug discovery efforts towards compounds with reduced risk of hERG-related cardiotoxicity.

  2. Advance in ERG Analysis: From Peak Time and Amplitude to Frequency, Power, and Energy

    Directory of Open Access Journals (Sweden)

    Mathieu Gauvin

    2014-01-01

    Full Text Available Purpose. To compare time domain (TD: peak time and amplitude analysis of the human photopic electroretinogram (ERG with measures obtained in the frequency domain (Fourier analysis: FA and in the time-frequency domain (continuous (CWT and discrete (DWT wavelet transforms. Methods. Normal ERGs n=40 were analyzed using traditional peak time and amplitude measurements of the a- and b-waves in the TD and descriptors extracted from FA, CWT, and DWT. Selected descriptors were also compared in their ability to monitor the long-term consequences of disease process. Results. Each method extracted relevant information but had distinct limitations (i.e., temporal and frequency resolutions. The DWT offered the best compromise by allowing us to extract more relevant descriptors of the ERG signal at the cost of lesser temporal and frequency resolutions. Follow-ups of disease progression were more prolonged with the DWT (max 29 years compared to 13 with TD. Conclusions. Standardized time domain analysis of retinal function should be complemented with advanced DWT descriptors of the ERG. This method should allow more sensitive/specific quantifications of ERG responses, facilitate follow-up of disease progression, and identify diagnostically significant changes of ERG waveforms that are not resolved when the analysis is only limited to time domain measurements.

  3. Interaction among hERG channel blockers is a potential mechanism of death in caffeine overdose.

    Science.gov (United States)

    Zheng, Jifeng; Zhao, Wei; Xu, Kai; Chen, Qingmao; Chen, Yingying; Shen, Yueliang; Xiao, Liping; Jiang, Liqin; Chen, Yuan

    2017-04-05

    Caffeine overdose death is due to cardiac arrest, but its mechanism has not been explored in detail. In this study, our data showed that caffeine significantly prolonged the heart rate-corrected QT interval (QTc) of rabbits in vivo (PCaffeine was also found to be a hERG channel blocker with an IC50 of 5.04mM (n=5). Although these two findings likely link caffeine overdose death with hERG channel blockade, the amount of caffeine consumption needed to reach the IC50 is very high. Further study demonstrated that addition another hERG blocker could lower the consumption of caffeine significantly, no matter whether two hERG blockers share the same binding sites. Our data does not rule out other possibility, however, it suggests that there is a potential causal relationship between caffeine overdose death with hERG channel and the interaction among these hERG blockers. Published by Elsevier B.V.

  4. JURASSIC PALEOGEOGRAPHY OF THE PIENINY AND OUTER CARPATHIAN BASINS

    Directory of Open Access Journals (Sweden)

    JAN GOLONKA

    2004-03-01

    Full Text Available The Jurassic history of the Pieniny/Outer Carpathian basins reflects the evolution of the Circum-Tethyan area, especially its Alpine Tethys part. The Alpine Tethys that is Ligurian, Penninic Oceans and Pieniny/Magura Basin constitute the extension of the Central Atlantic system. The synrift stage lasted in the Pieniny/Magura Basin from late Early Jurassic to Tithonian (the Magura Unit constitutes the southernmost part of the Outer Flysch Carpathians. The Pieniny rift opened during Pliensbachian – Aalenian. The central Atlantic and Alpine Tethys went into a drifting stage during the Middle Jurassic. The Late Jurassic (Oxfordian-Kimmeridgian history of the Pieniny/Magura Basin reflects strongest facial differentiation within sedimentary basin where mixed siliceous-carbonate sedimentation took place. Greatest deepening effect is indicated by widespread Oxfordian radiolarites, which occur in the all basinal successions, whereas the shallowest zone is completely devoid of siliceous intercalations at that time (sedimentation from Ammonitico Rosso facies up to coral reef limestone. The southern part of the North European Platform, north from the Pieniny/Magura realm, started to be rifted during Late Jurassic time and Silesian Basin in the Outer Western Carpathians and Sinaia Basin in the Eastern Carpathians, with black, mainly redeposited marls have been created. The outer sub-basins were differentiated during the latest (Hauterivian-Barremian phase of basinal development. The connection of Silesian Basin with Sinaia and Southern Carpathian Severin areas suggests the NW-SE direction of the basinal axis while the orientation of the Pieniny Klippen Belt/Magura Basin was SW-NE so, two Outer Carpathian perpendicular directions are possible within the basins. Major reorganization happened during the Tithonian-Berriasian time. It was reflected by both paleoceanographical and paleoclimatical changes. The Neo-Cimmerian tectonic events as well as main phase

  5. On Pluvial Compaction of Sand

    DEFF Research Database (Denmark)

    Jacobsen, Moust

    At the Institute of Civil Engineering in Aalborg model tests on dry sand specimens have been carried out during the last five years. To reduce deviations in test results, the sand laying technique has been carefully studied, and the sand mass spreader constructed. Preliminary results have been...

  6. Trans-border (east Serbia/west Bulgaria correlation of the Jurassic sediments: Main Jurassic paleogeographic units

    Directory of Open Access Journals (Sweden)

    Tchoumatchenco Platon

    2006-01-01

    Full Text Available In the region across the Serbian/Bulgarian state border, there are individualized 5 Jurassic paleogeographic units (from West to East: (1 the Thracian Massif Unit without Jurassic sediments; (2 the Lužnica-Koniavo Unit - partially with Liassic in Grsten facies and with deep water Middle Callovian-Kimmeridgian (p. p sediments of the type "ammonitico rosso", and Upper Kimmeridgian-Tithonian siliciclastics flysch; (3 The Getic Unit subdivided into two subunits - the Western Getic Sub-Uni - without Lower Jurassic sediments and the Eastern Getic Sub-Unit with Lower Jurassic continental and marine sediments, which are followed in both sub-units by carbonate platform limestones (type Stramberk; (4 the Infra (Sub-Getic Unit - with relatively deep water Liassic and Dogger sediments (the Dogger of type "black shales with Bossitra alpine" and Middle Callovian-Tithonian of type "ammonitico rosso"; (5 the Danubian Unit - with shallow water Liassic, Dogger and Malm (Miroč-Vrška Čuka Zone, deep water Dogger and Malm (Donjomilanovačko-Novokoritska Zone.

  7. Coal petrology and genesis of Jurassic coal in the Ordos Basin, China

    Directory of Open Access Journals (Sweden)

    Weihua Ao

    2012-01-01

    Full Text Available Multiple sets of thick coal beds characterized by simple structure and shallow burial depth were developed in the Early and Middle Jurassic strata of the Ordos Basin, northwestern China. The huge reserves of this high quality coal have a high commercial value. We studied the coal’s petrologic characteristics and its maceral distribution to determine the maceral’s contribution to generation of oil and gas. The results show that the Jurassic coals in the Ordos Basin have special petrological features because of the Basin’s unique depositional environment which was mainly a series of high-stand swamps in the upper fluvial system. These petrographic features are a result of the development of typical inland lakes where some sand bodies were formed by migrating rivers. After burial, the peat continued to undergo oxidizing conditions, this process generated extensive higher inertinite contents in the coals and the vitrinite components were altered to semi-vitrinite. The macroscopic petrographic types of these Jurassic coals are mainly semi-dull coal, dull coal, semilustrous and lustrous coal. The proportions of semi-dull coal and dull coal are higher in the basin margins, especially in the area near the northern margin. The numbers of semilustrous and lustrous coals increase southwards and towards the central basin. This situation indicates that different coal-forming swamp environments have major controlling effects on the coal components. Another observation is that in the Ordos’ coal sequences, especially in the lower part, some sandstone beds are thick, up to 20 m with a coarse grain size. The higher fusinite content in the macerals accompanies a higher semi-vitrinite content with more complete and regular plant cell structure. The fusinite structure is clear and well preserved. After burial, the lithology of the roof and floor rocks can continue to affect the evolution of coal petrology. The sand bodies in the roof and floor exhibit good

  8. Sand hazards on tourist beaches.

    Science.gov (United States)

    Heggie, Travis W

    2013-01-01

    Visiting the beach is a popular tourist activity worldwide. Unfortunately, the beach environment is abundant with hazards and potential danger to the unsuspecting tourist. While the traditional focus of beach safety has been water safety oriented, there is growing concern about the risks posed by the sand environment on beaches. This study reports on the death and near death experience of eight tourists in the collapse of sand holes, sand dunes, and sand tunnels. Each incident occurred suddenly and the complete burial in sand directly contributed to the victims injury or death in each case report.

  9. PROCESSING OF MONAZITE SAND

    Science.gov (United States)

    Calkins, G.D.; Bohlmann, E.G.

    1957-12-01

    A process for the recovery of thorium, uranium, and rare earths from monazite sands is presented. The sands are first digested and dissolved in concentrated NaOH, and the solution is then diluted causing precipitation of uranium, thorium and rare earth hydroxides. The precipitate is collected and dissolved in HCl, and the pH of this solution is adjusted to about 6, precipitating the hydroxides of thorium and uranium but leaving the rare earths in solution. The rare earths are then separated from the solution by precipitation at a still higher pH. The thorium and uranium containing precipitate is redissolved in HNO/sub 3/ and the two elements are separated by extraction into tributyl phosphate and back extraction with a weakly acidic solution to remove the thorium.

  10. ENVIRONMENTS AND FAUNAL PATTERNS IN THE KACHCHH RIFT BASIN, WESTERN INDIA, DURING THE JURASSIC

    Directory of Open Access Journals (Sweden)

    FRANZ THEODOR FÜRSICH

    2004-03-01

    Full Text Available Marine Jurassic sediments (Bajocian-Tithonian of the Kachchh Basin were deposited in a ramp setting. Except during the Middle and Late Bathonian, when a carbonate regime became established, the fill of the basin consists predominantly of siliciclastics. The sediments represent environments that range from coastal plains (rivers and associated flood plains with caliche nodules, deltas, brackish water lagoons, nearshore sand and iron-oolite bars of the inner ramp, generally situated above fair-weather wave-base, to the middle ramp influenced by storm-waves and by storm-generated currents, and finally to the outer ramp which is characterised by low energy, fine-grained sediments. Changes in relative sea level produced a cyclic sedimentation pattern. The rich benthic fauna of macroinvertebrates is dominated by bivalves, followed by brachiopods, gastropods, corals, serpulids, and sponges. The analysis of 370 statistical samples and more than 27, 000 specimens produced more than 40 benthic associations and assemblages. They show a relationship to several environmental parameters, two of which, salinity and climate, are briefly discussed. The spatial distribution of the facies and biota is outlined for two time slices, the Bathonian and the Callovian-Oxfordian, respectively.

  11. Moving sand dunes

    CERN Document Server

    Sparavigna, Amelia Carolina

    2011-01-01

    In several desert areas, the slow motion of sand dunes can be a challenge for modern human activities and a threat for the survival of ancient places or archaeological sites. However, several methods exist for surveying the dune fields and estimate their migration rate. Among these methods, the use of satellite images, in particular of those freely available on the World Wide Web, is a convenient resource for the planning of future human settlements and activities.

  12. Modification of the association between obesity and lethal prostate cancer by TMPRSS2:ERG.

    Science.gov (United States)

    Pettersson, Andreas; Lis, Rosina T; Meisner, Allison; Flavin, Richard; Stack, Edward C; Fiorentino, Michelangelo; Finn, Stephen; Graff, Rebecca E; Penney, Kathryn L; Rider, Jennifer R; Nuttall, Elizabeth J; Martin, Neil E; Sesso, Howard D; Pollak, Michael; Stampfer, Meir J; Kantoff, Philip W; Giovannucci, Edward L; Loda, Massimo; Mucci, Lorelei A

    2013-12-18

    TMPRSS2:ERG is a hormonally regulated gene fusion present in about half of prostate tumors. We investigated whether obesity, which deregulates several hormonal pathways, interacts with TMPRSS2:ERG to impact prostate cancer outcomes. The study included 1243 participants in the prospective Physicians' Health Study and Health Professionals Follow-Up Study diagnosed with prostate cancer between 1982 and 2005. ERG overexpression (a TMPRSS2:ERG marker) was assessed by immunohistochemistry of tumor tissue from radical prostatectomy or transurethral resection of the prostate. Body mass index (BMI) and waist circumference, measured on average 1.3 years and 5.3 years before diagnosis, respectively, were available from questionnaires. Data on BMI at baseline was also available. We used Cox regression to calculate hazard ratios and 95% confidence intervals (CIs). All statistical tests were two-sided. During a mean follow-up of 12.8 years, 119 men developed lethal disease (distant metastases or prostate cancer death). Among men with ERG-positive tumors, the multivariable hazard ratio for lethal prostate cancer was 1.48 (95% CI = 0.98 to 2.23) per 5-unit increase in BMI before diagnosis, 2.51 (95% CI = 1.26 to 4.99) per 8-inch increase in waist circumference before diagnosis, and 2.22 (95% CI = 1.35 to 3.63) per 5-unit increase in BMI at baseline. The corresponding hazard ratios among men with ERG-negative tumors were 1.10 (95% CI = 0.76 to1.59; P interaction = .24), 1.14 (95% CI = 0.62 to 2.10; P interaction = .09), and 0.78 (95% CI = 0.52 to 1.19; P interaction = .001). These results suggest that obesity is linked with poorer prostate cancer prognosis primarily in men with tumors harboring the gene fusion TMPRSS2:ERG.

  13. Cancer Prognosis Defined by the Combined Analysis of 8q, PTEN and ERG

    Directory of Open Access Journals (Sweden)

    Maria P. Silva

    2016-12-01

    Full Text Available Overtreatment is a major concern in men diagnosed with prostate cancer. The aim of this study was to evaluate the combined prognostic role of three frequent molecular alterations in prostate cancer, namely relative 8q gain, ERG overexpression, and loss of PTEN expression, in a series of 136 patients with prostate cancer treated with prostatectomy and with a long follow-up. Fluorescent in situ hybridization was used to detect the relative copy number of 8q and immunohistochemistry was used for quantitative assessment of ERG and PTEN expression. During a median follow-up period of 117.8 months, 66 (49% patients had disease recurrence. Relative 8q gain, ERG overexpression, and loss of PTEN expression were observed in 18%, 56%, and 33% of the cases, respectively. No association with patient recurrence-free survival was found for relative 8q gain or ERG overexpression on their own, whereas loss of PTEN expression was associated with worse recurrence-free survival (P = .006. Interestingly, in the subgroup of patients with normal PTEN expression, we found that the combined relative 8q gain/ERG overexpression is associated with high risk of recurrence (P = .008, suggesting that alternative mechanisms exist for progression into clinically aggressive disease. Additionally, in intermediate-risk patients with normal PTEN expression in their tumors, the combination of 8q gain/ERG overexpression was associated with a poor recurrence-free survival (P < .001, thus indicating independent prognostic value. This study shows that the combined analysis of 8q, ERG and PTEN contributes to an improved clinical outcome stratification of prostate cancer patients treated with radical prostatectomy.

  14. The A395T mutation in ERG11 gene confers fluconazole resistance in Candida tropicalis causing candidemia.

    Science.gov (United States)

    Tan, Jingwen; Zhang, Jinqing; Chen, Wei; Sun, Yi; Wan, Zhe; Li, Ruoyu; Liu, Wei

    2015-04-01

    The mechanism of fluconazole resistance in Candida tropicalis is still unclear. Recently, we isolated a fluconazole-resistant strain of C. tropicalis from the blood specimen of a patient with candidemia in China. In vitro antifungal susceptibility of the isolate was determined by using CLSI M27-A3 and E-test methods. The sequence of ERG11 gene was then analyzed, and the three-dimensional model of Erg11p encoded by ERG11 gene was also investigated. The sequencing of ERG11 gene revealed the mutation of A395T in this fluconazole-resistant isolate of C. tropicalis, resulting in the Y132F substitution in Erg11p. Sequence alignment and three-dimensional model comparison of Erg11ps showed high similarity between fluconazole-susceptible isolates of C. tropicalis and Candida albicans. The comparison of the three-dimensional models of Erg11ps demonstrated that the position of the Y132F substitution in this isolate of C. tropicalis is identical to the isolate of C. albicans with fluconazole resistance resulting from Y132F substitution in Erg11p. Hence, we ascertain that the Y132F substitution of Erg11p caused by A395T mutation in ERG11 gene confers the fluconazole resistance in C. tropicalis.

  15. Booming Sand Dunes

    Science.gov (United States)

    Vriend, Nathalie

    "Booming" sand dunes are able to produce low-frequency sound that resembles a pure note from a music instrument. The sound has a dominant audible frequency (70-105 Hz) and several higher harmonics and may be heard from far distances away. A natural or induced avalanche from a slip face of the booming dune triggers the emission that may last for several minutes. There are various references in travel literature to the phenomenon, but to date no scientific explanation covered all field observations. This thesis introduces a new physical model that describes the phenomenon of booming dunes. The waveguide model explains the selection of the booming frequency and the amplification of the sound in terms of constructive interference in a confined geometry. The frequency of the booming is a direct function of the dimensions and velocities in the waveguide. The higher harmonics are related to the higher modes of propagation in the waveguide. The experimental validation includes quantitative field research at the booming dunes of the Mojave Desert and Death Valley National Park. Microphone and geophone recordings of the acoustic and seismic emission show a variation of booming frequency in space and time. The analysis of the sensor data quantifies wave propagation characteristics such as speed, dispersion, and nonlinear effects and allows the distinction between the source mechanism of the booming and the booming itself. The migration of sand dunes results from a complicated interplay between dune building, wind regime, and precipitation. The morphological and morphodynamical characteristics of two field locations are analyzed with various geophysical techniques. Ground-penetrating radar images the subsurface structure of the dunes and reveal a natural, internal layering that is directly related to the history of dune migration. The seismic velocity increases abruptly with depth and gradually increases with downhill position due to compaction. Sand sampling shows local

  16. Differential expression of hERG1 channel isoforms reproduces properties of native I(Kr) and modulates cardiac action potential characteristics

    DEFF Research Database (Denmark)

    Larsen, Anders Peter; Olesen, Søren-Peter

    2010-01-01

    The repolarizing cardiac rapid delayed rectifier current, I(Kr), is composed of ERG1 channels. It has been suggested that two isoforms of the ERG1 protein, ERG1a and ERG1b, both contribute to I(Kr). Marked heterogeneity in the kinetic properties of native I(Kr) has been described. We hypothesized...

  17. A novel assessment of nefazodone-induced hERG inhibition by electrophysiological and stereochemical method

    Energy Technology Data Exchange (ETDEWEB)

    Shin, Dae-Seop; Park, Myoung Joo [Drug Discovery Platform Technology Research Group, Korea Research Institute of Chemical Technology, Daejeon (Korea, Republic of); Lee, Hyang-Ae [Korea Institute of Toxicology, Korea Research Institute of Chemical Technology, Daejeon (Korea, Republic of); Lee, Joo Yun; Chung, Hee-Chung; Yoo, Dae Seok; Chae, Chong Hak [Drug Discovery Platform Technology Research Group, Korea Research Institute of Chemical Technology, Daejeon (Korea, Republic of); Park, Sang-Joon [College of Veterinary Medicine, Kyungpook National University, Daegu (Korea, Republic of); Kim, Ki-Suk [Korea Institute of Toxicology, Korea Research Institute of Chemical Technology, Daejeon (Korea, Republic of); Bae, Myung Ae, E-mail: mbae@krict.re.kr [Drug Discovery Platform Technology Research Group, Korea Research Institute of Chemical Technology, Daejeon (Korea, Republic of)

    2014-02-01

    Nefazodone was used widely as an antidepressant until it was withdrawn from the U.S. market in 2004 due to hepatotoxicity. We have investigated methods to predict various toxic effects of drug candidates to reduce the failure rate of drug discovery. An electrophysiological method was used to assess the cardiotoxicity of drug candidates. Small molecules, including withdrawn drugs, were evaluated using a patch-clamp method to establish a database of hERG inhibition. Nefazodone inhibited hERG channel activity in our system. However, nefazodone-induced hERG inhibition indicated only a theoretical risk of cardiotoxicity. Nefazodone inhibited the hERG channel in a concentration-dependent manner with an IC{sub 50} of 45.3 nM in HEK-293 cells. Nefazodone accelerated both the recovery from inactivation and its onset. Nefazodone also accelerated steady-state inactivation, although it did not modify the voltage-dependent character. Alanine mutants of hERG S6 and pore region residues were used to identify the nefazodone-binding site on hERG. The hERG S6 point mutants Y652A and F656A largely abolished the inhibition by nefazodone. The pore region mutant S624A mildly reduced the inhibition by nefazodone but T623A had little effect. A docking study showed that the aromatic rings of nefazodone interact with Y652 and F656 via π–π interactions, while an amine interacted with the S624 residue in the pore region. In conclusion, Y652 and F656 in the S6 domain play critical roles in nefazodone binding. - Highlights: • Nefazodone inhibits hERG channels with an IC{sub 50} of 45.3 nM in HEK-293 cells. • Nefazodone blocks hERG channels by binding to the open channels. • Y652 and F656 are important for binding of nefazodone. • The aromatic rings of nefazodone interact with Y652 and F656 via π–π interactions.

  18. Sediment mathematical model for sand ridges and sand waves

    Institute of Scientific and Technical Information of China (English)

    LI Daming; WANG Xiao; WANG Xin; LI Yangyang

    2016-01-01

    A new theoretical model is formulated to describe internal movement mechanisms of the sand ridges and sand waves based on the momentum equation of a solid-liquid two-phase flow under a shear flow. Coupling this equation with two-dimensional shallow water equations and wave reflection-diffraction equation of mild slope, a two-dimensional coupling model is established and a validation is carried out by observed hydrogeology, tides, waves and sediment. The numerical results are compared with available observations. Satisfactory agreements are achieved. This coupling model is then applied to the Dongfang 1-1 Gas Field area to quantitatively predict the movement and evolution of submarine sand ridges and sand waves. As a result, it is found that the sand ridges and sand waves movement distance increases year by year, but the development trend is stable.

  19. Pred-hERG: A Novel web-Accessible Computational Tool for Predicting Cardiac Toxicity.

    Science.gov (United States)

    Braga, Rodolpho C; Alves, Vinicius M; Silva, Meryck F B; Muratov, Eugene; Fourches, Denis; Lião, Luciano M; Tropsha, Alexander; Andrade, Carolina H

    2015-10-01

    The blockage of the hERG K(+) channels is closely associated with lethal cardiac arrhythmia. The notorious ligand promiscuity of this channel earmarked hERG as one of the most important antitargets to be considered in early stages of drug development process. Herein we report on the development of an innovative and freely accessible web server for early identification of putative hERG blockers and non-blockers in chemical libraries. We have collected the largest publicly available curated hERG dataset of 5,984 compounds. We succeed in developing robust and externally predictive binary (CCR≈0.8) and multiclass models (accuracy≈0.7). These models are available as a web-service freely available for public at http://labmol.farmacia.ufg.br/predherg/. Three following outcomes are available for the users: prediction by binary model, prediction by multi-class model, and the probability maps of atomic contribution. The Pred-hERG will be continuously updated and upgraded as new information became available. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  20. p16 upregulation is linked to poor prognosis in ERG negative prostate cancer.

    Science.gov (United States)

    Burdelski, Christoph; Dieckmann, Tatsiana; Heumann, Asmus; Hube-Magg, Claudia; Kluth, Martina; Beyer, Burkhard; Steuber, Thomas; Pompe, Raisa; Graefen, Markus; Simon, Ronald; Minner, Sarah; Tsourlakis, Maria Christina; Koop, Christina; Izbicki, Jakob; Sauter, Guido; Krech, Till; Schlomm, Thorsten; Wilczak, Waldemar; Lebok, Patrick

    2016-09-01

    Altered expression of the p16 tumor suppressor is frequently found in prostate cancer, but its role for tumor development and patient prognosis is disputed. In order to clarify the prognostic role of p16 and to draw conclusions on interactions with key molecular features of prostate cancer, we studied p16 expression in a tissue microarray (TMA) with more than 12,400 prostate cancers and attached clinical, pathological, and molecular data such as ERG status and deletions of 3p13, 5q21, 6q15, and PTEN. p16 immunostaining was absent in non-neoplastic prostate cells but was found in 37 % of 9627 interpretable prostate cancers. Finding p16 expression in 58 % of ERG positive but in only 22 % of ERG negative cancers (p p16 upregulation and tumor phenotype or patient prognosis were strictly limited to the subset of ERG negative cancers. For example, p16 positivity increased from 15 % in Gleason ≤3 + 3 to 38 % in Gleason ≥4 + 4 cancers (p p16 upregulation was strongly linked to deletions of PTEN (p p16 upregulation is a strong prognostic factor in ERG negative cancers. The strict limitation of its prognostic impact to a molecularly defined subgroup challenges the concept of molecular prognosis testing without considering molecular subtypes.

  1. Early lineage priming by trisomy of Erg leads to myeloproliferation in a Down syndrome model.

    Science.gov (United States)

    Ng, Ashley P; Hu, Yifang; Metcalf, Donald; Hyland, Craig D; Ierino, Helen; Phipson, Belinda; Wu, Di; Baldwin, Tracey M; Kauppi, Maria; Kiu, Hiu; Di Rago, Ladina; Hilton, Douglas J; Smyth, Gordon K; Alexander, Warren S

    2015-05-01

    Down syndrome (DS), with trisomy of chromosome 21 (HSA21), is the commonest human aneuploidy. Pre-leukemic myeloproliferative changes in DS foetal livers precede the acquisition of GATA1 mutations, transient myeloproliferative disorder (DS-TMD) and acute megakaryocytic leukemia (DS-AMKL). Trisomy of the Erg gene is required for myeloproliferation in the Ts(1716)65Dn DS mouse model. We demonstrate here that genetic changes specifically attributable to trisomy of Erg lead to lineage priming of primitive and early multipotential progenitor cells in Ts(1716)65Dn mice, excess megakaryocyte-erythroid progenitors, and malignant myeloproliferation. Gene expression changes dependent on trisomy of Erg in Ts(1716)65Dn multilineage progenitor cells were correlated with those associated with trisomy of HSA21 in human DS hematopoietic stem and primitive progenitor cells. These data suggest a role for ERG as a regulator of hematopoietic lineage potential, and that trisomy of ERG in the context of DS foetal liver hemopoiesis drives the pre-leukemic changes that predispose to subsequent DS-TMD and DS-AMKL.

  2. Rock mechanics related to Jurassic underburden at Valdemar oil field

    DEFF Research Database (Denmark)

    Foged, Niels

    1999-01-01

    .It has been initiated as a feasibility study of the North Jens-1 core 12 taken in the top Jurassic clay shale as a test specimens for integrated petrological, mineralogical and rock mechanical studies. Following topics are studied:(1) Pore pressure generation due to conversion of organic matter...... and deformation properties of the clay shale using the actual core material or outcrop equivalents.(3) Flushing mechanisms for oil and gas from source rocks due to possibly very high pore water pressure creating unstable conditions in deeply burried sedimentsThere seems to be a need for integrating the knowledge...... in a number of geosciences to the benefit of common understanding of important reservoir mechanisms. Rock mechanics and geotechnical modelling might be key points for this understanding of reservoir geology and these may constitute a platform for future research in the maturing and migration from the Jurassic...

  3. A new carnivorous dinosaur from the Late Jurassic Solnhofen archipelago.

    Science.gov (United States)

    Göhlich, Ursula B; Chiappe, Luis M

    2006-03-16

    Small Late Jurassic theropod dinosaurs are rare worldwide. In Europe these carnivorous dinosaurs are represented primarily by only two skeletons of Compsognathus, neither of which is well preserved. Here we describe a small new theropod dinosaur from the Late Jurassic period of Schamhaupten in southern Germany. Being exquisitely preserved and complete from the snout to the distal third of the tail, the new fossil is the best-preserved predatory, non-avian dinosaur in Europe. It possesses a suite of characters that support its identification as a basal coelurosaur. A cladistic analysis indicates that the new taxon is closer to maniraptorans than to tyrannosauroids, grouping it with taxa often considered to be compsognathids. Large portions of integument are preserved along its tail. The absence of feathers or feather-like structures in a fossil phylogenetically nested within feathered theropods indicates that the evolution of these integumentary structures might be more complex than previously thought.

  4. A basal tyrannosauroid dinosaur from the Late Jurassic of China.

    Science.gov (United States)

    Xu, Xing; Clark, James M; Forster, Catherine A; Norell, Mark A; Erickson, Gregory M; Eberth, David A; Jia, Chengkai; Zhao, Qi

    2006-02-01

    The tyrannosauroid fossil record is mainly restricted to Cretaceous sediments of Laurasia, although some very fragmentary Jurassic specimens have been referred to this group. Here we report a new basal tyrannosauroid, Guanlong wucaii gen. et sp. nov., from the lower Upper Jurassic of the Junggar Basin, northwestern China. G. wucaii is the oldest known tyrannosauroid and shows several unexpectedly primitive pelvic features. Nevertheless, the limbs of G. wucaii share several features with derived coelurosaurs, and it possesses features shared by other coelurosaurian clades. This unusual combination of character states provides an insight into the poorly known early radiation of the Coelurosauria. Notably, the presumed predatory Guanlong has a large, fragile and highly pneumatic cranial crest that is among the most elaborate known in any non-avian dinosaur and could be comparable to some classical exaggerated ornamental traits among vertebrates.

  5. A mysterious giant ichthyosaur from the lowermost Jurassic of Wales

    Directory of Open Access Journals (Sweden)

    Jeremy E. Martin

    2015-12-01

    Full Text Available Ichthyosaurs rapidly diversified and colonised a wide range of ecological niches during the Early and Middle Triassic period, but experienced a major decline in diversity near the end of the Triassic. Timing and causes of this demise and the subsequent rapid radiation of the diverse, but less disparate, parvipelvian ichthyosaurs are still unknown, notably because of inadequate sampling in strata of latest Triassic age. Here, we describe an exceptionally large radius from Lower Jurassic deposits at Penarth near Cardiff, south Wales (UK the morphology of which places it within the giant Triassic shastasaurids. A tentative total body size estimate, based on a regression analysis of various complete ichthyosaur skeletons, yields a value of 12–15 m. The specimen is substantially younger than any previously reported last known occurrences of shastasaurids and implies a Lazarus range in the lowermost Jurassic for this ichthyosaur morphotype.

  6. Rock mechanics related to Jurassic underburden at Valdemar oil field

    DEFF Research Database (Denmark)

    Foged, Niels

    1999-01-01

    The presented study is a part of the Danish Energy Research project PRIORITY - Imroved Oil Recovery and Productivity from Lower Cretaceous Carbonates.It considers a multi-disciplinary study of the Jurassic shale underlying the Valdemar structure and gives a status of the on-going research work.......It has been initiated as a feasibility study of the North Jens-1 core 12 taken in the top Jurassic clay shale as a test specimens for integrated petrological, mineralogical and rock mechanical studies. Following topics are studied:(1) Pore pressure generation due to conversion of organic matter...... and deformation properties of the clay shale using the actual core material or outcrop equivalents.(3) Flushing mechanisms for oil and gas from source rocks due to possibly very high pore water pressure creating unstable conditions in deeply burried sedimentsThere seems to be a need for integrating the knowledge...

  7. The palaeogeography of Sundaland and Wallacea since the Late Jurassic

    OpenAIRE

    Robert Hall

    2013-01-01

    The continental core of Southeast (SE) Asia, Sundaland, was assembled from Gondwana fragments by the Early Mesozoic. Continental blocks rifted from Australia in the Jurassic [South West (SW) Borneo, East Java-West Sulawesi-Sumba], and the Woyla intraoceanic arc of Sumatra, were added to Sundaland in the Cretaceous. These fragments probably included emergent areas and could have carried a terrestrial flora and fauna. Sarawak, the offshore Luconia-Dangerous Grounds areas, and Palawan include As...

  8. MIDDLE TO LATE JURASSIC BIOFACIES OF SAUDI ARABIA

    Directory of Open Access Journals (Sweden)

    GERAINT W. HUGHES

    2004-03-01

    Full Text Available Saudi Arabian Jurassic carbonate hydrocarbon reservoirs were first examined stratigraphically using microfauna. Current microfaunal studies concentrate on the identification and constraint of palaeoenvironmental variations and determination of high-resolution depositional cyclicity of the reservoir carbonates. It is apparent that the environmental sensitivity of benthonic foraminifera provides a potentially valuable technique for the determining subtle variations in the depositional environment and also providing a proxy for sea-level fluctuations.

  9. Carbon cycle history through the Middle Jurassic of Hungary

    Science.gov (United States)

    Price, Gregory; Fozy, Istvan; Galacz, Andras

    2016-04-01

    A carbonate carbon isotope curve from the Aalenian-Bathonian interval is presented from the Obanya valley, of the Mecsek Mountains, Hungary. This interval is less well constrained and studied that other Jurassic time slices. The Obanya valley lies in the eastern part of the Mecsek Mountains, between Obanya and Kisujbanya and provides excellent exposures of a near continuous Aalenian to Lower Cretaceous sequence. It is not strongly affected by tectonics, as compared to other sections of eastern Mecsek of the same age. In parts, a rich fossil assemblage has been collected; the Bathonian ammonites are especially valuable as this locality. The pelagic Middle Jurassic is represented by thin-bedded limestones (the Obanya Limestone) and is overlain by Upper Jurassic siliceous limestones and radiolarites (the Fonyaszo Limestone). The new data indicates a series of positive anomalies within the late Aalenian and early-middle Bajocian. These data are comparable with carbonate carbon isotope recorded from other Tethyan margin sediments. Our integrated biostratigraphy and carbon isotope stratigraphy enables us to improve stratigraphic correlation and age determination of the examined strata.

  10. Archosaur evolution during the Jurassic: a southern perspective

    Directory of Open Access Journals (Sweden)

    Oliver W. M. Rauhut

    2008-12-01

    Full Text Available The fossil record of archosaurs - crocodylomorphs, pterosaurs and dinosaurs - from the Jurassic of the Southern Hemisphere is critically reviewed, and its evolutionary implications are evaluated. Although several important faunas and also isolated finds are known from Gondwana, the record in total is still very patchy, and any evolutionary scenario based on this record should be seen as tentative. Compared to the Northern Hemisphere, southern archosaurs are much more poorly known, which is especially true for terrestrial crocodiles and pterosaurs. Marine crocodiles are rather well represented in south-western South America, whereas the report of terrestrial archosaurs is currently best for Africa. However, in South America, important and especially promising archosaur faunas are known from the Callovian Cañadón Asfalto and the (?Tithonian Cañadón Calcáreo formations of Chubut province, Argentina. Early and Middle Jurassic Gondwanan archosaurs demonstrate that the faunas of that period still had a generally Pangean distribution, whereas first indications of differential archosaur evolution in the Northern and Southern Hemispheres are evident in Late Jurassic Gondwanan faunas.

  11. Compressive behavior of fine sand.

    Energy Technology Data Exchange (ETDEWEB)

    Martin, Bradley E. (Air Force Research Laboratory, Eglin, FL); Kabir, Md. E. (Purdue University, West Lafayette, IN); Song, Bo; Chen, Wayne (Purdue University, West Lafayette, IN)

    2010-04-01

    The compressive mechanical response of fine sand is experimentally investigated. The strain rate, initial density, stress state, and moisture level are systematically varied. A Kolsky bar was modified to obtain uniaxial and triaxial compressive response at high strain rates. A controlled loading pulse allows the specimen to acquire stress equilibrium and constant strain-rates. The results show that the compressive response of the fine sand is not sensitive to strain rate under the loading conditions in this study, but significantly dependent on the moisture content, initial density and lateral confinement. Partially saturated sand is more compliant than dry sand. Similar trends were reported in the quasi-static regime for experiments conducted at comparable specimen conditions. The sand becomes stiffer as initial density and/or confinement pressure increases. The sand particle size become smaller after hydrostatic pressure and further smaller after dynamic axial loading.

  12. An extended 15 Hz ERG protocol (1): the contributions of primary and secondary rod pathways and the cone pathway

    OpenAIRE

    Bijveld, M.M.C.; Kappers, A.M.L.; Riemslag, F C C; Hoeben, F.P.; Vrijling, A.C.L.; Genderen, M.M.

    2011-01-01

    The minimum in the amplitude versus flash strength curve of dark-adapted 15 Hz electroretinograms (ERGs) has been attributed to interactions between the primary and secondary rod pathways. The 15 Hz ERGs can be used to examine the two rod pathways in patients. However, previous studies suggested that the cone-driven pathway also contributes to the 15 Hz ERGs for flash strengths just above that of the minimum. We investigated cone pathway contributions to improve upon the interpretation of (ab...

  13. In Silico Predictions of hERG Channel Blockers in Drug Discovery

    DEFF Research Database (Denmark)

    Taboureau, Olivier; Sørensen, Flemming Steen

    2011-01-01

    The risk for cardiotoxic side effects represents a major problem in clinical studies of drug candidates and regulatory agencies have explicitly recommended that all new drug candidates should be tested for blockage of the human Ether-a-go-go Related-Gene (hERG) potassium channel. Indeed, several....... Significant progress has been made in structure-based and ligand-based drug design and a number of models have been developed to predict hERG blockage.Although approaches such as homology modeling in combination with docking and molecular dynamics bring us closer to understand the drug-channel interactions...... on current methods to predict hERG blockers and the need of consistent data to improve the quality and performance of the in silico models. Finally, integration of network-based analysis on drugs inducing potentially long-QT syndrome and arrhythmia will be discussed as a new perspective for a better...

  14. In silico predictions of hERG channel blockers in drug discovery

    DEFF Research Database (Denmark)

    Taboureau, Olivier; Jørgensen, Flemming Steen

    2011-01-01

    The risk for cardiotoxic side effects represents a major problem in clinical studies of drug candidates and regulatory agencies have explicitly recommended that all new drug candidates should be tested for blockage of the human Ether-a-go-go Related-Gene (hERG) potassium channel. Indeed, several....... Significant progress has been made in structure-based and ligand-based drug design and a number of models have been developed to predict hERG blockage. Although approaches such as homology modeling in combination with docking and molecular dynamics bring us closer to understand the drug-channel interactions...... on current methods to predict hERG blockers and the need of consistent data to improve the quality and performance of the in silico models. Finally, integration of network-based analysis on drugs inducing potentially long-QT syndrome and arrhythmia will be discussed as a new perspective for a better...

  15. The role of the ERG in the diagnosis and treatment of Age-Related Macular Degeneration.

    Science.gov (United States)

    Gerth, Christina

    2009-02-01

    Age-related macular degeneration (AMD) is affecting an increasing number of people, with 2.95 million people estimated to be affected in the USA by 2020. Possible preventive agents, such as vitamins and supplements have been studied and new treatment options for AMD have been developed in recent years. What role does electrophysiology play as a sensitive outcome measure? The most commonly used tests are the full-field electroretinogram (ffERG) and the multifocal ERG (mfERG). Test results from patients with AMD and reduced central vision need special attention in respect to fixation pattern, age-matched control data, and retinal luminance. Advantages, disadvantages and limitations of techniques will be considered, together with a review of published studies.

  16. Sand dollar sites orogenesis

    Science.gov (United States)

    Amos, Dee

    2013-04-01

    The determinology of the humble sand dollars habitat changing from inception to the drastic evolution of the zone to that of present day. Into the cauldron along the southern Californian 'ring of fire' lithosphere are evidence of geosynclinals areas, metasedimentary rock formations and hydrothermal activity. The explanation begins with 'Theia' and the Moon's formation, battles with cometary impacts, glacial ages, epochs with evolutionary bottlenecks and plate tectonics. Fully illustrated the lecture includes localised diagrams and figures with actual subject photographic examples of plutonic, granitic, jade and peridodite. Finally, the origins of the materials used in the lecture are revealed for prosecution by future students and the enjoyment of interested parties in general.

  17. Sand Storms Trigger Alarm

    Institute of Scientific and Technical Information of China (English)

    LI LI

    2010-01-01

    @@ After an unusually humid winter with at least 10 snowfalls in Beijing, a severe andstorm blown by strong winds bringing with it thousands of tons of desert sand took many residents of the city by surprise.On the morning of March 20, Beijingers woke up to see clouds of yellow dust in the air and a sky that was an ominous orange in color.The loose soil and dust that had traveled htmdreds of miles from deserts in Mongolia and China's northwest blanketed Beijing's streets, covering parked vehicles, bikes, roofs and even plant life,as well as making its way into people's homes.

  18. Fortune Cookie Sand Dunes

    Science.gov (United States)

    2003-01-01

    MGS MOC Release No. MOC2-432, 25 July 2003This Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image shows a field of small barchan sand dunes in the north polar region near 71.7oN, 51.3oW. Some of them are shaped like fortune cookies. The message these dunes provide: winds blow through this region from the lower right toward the upper left. The steep slip face slopes of these dunes, which point toward the upper left, indicate the wind direction. The scene is illuminated by sunlight from the upper right. The image is 3 km (1.9 mi) wide.

  19. A family of sand automata

    CERN Document Server

    Faulkner, Nicholas

    2012-01-01

    We study some dynamical properties of a family of two-dimensional cellular automata: those that arise from an underlying one dimensional sand automaton whose local rule is obtained using a latin square. We identify a simple sand automaton G whose local rule is algebraic, and classify this automaton as having equicontinuity points, but not being equicontinuous. We also show it is not surjective. We generalise some of these results to a wider class of sand automata.

  20. Dilatometric Characterization of Foundry Sands

    Directory of Open Access Journals (Sweden)

    M. Břuska

    2012-04-01

    Full Text Available The goal of this contribution is summary of physical – chemistry properties of usually used foundry silica and no – silica sands in Czech foundries. With the help of dilatometry analysis theoretical assumptions of influence of grain shape and size on dilatation value of sands were confirmed. Determined was the possibility of dilatometry analysis employment for preparing special (hybrid sands with lower and/or more linear character of dilatation.

  1. Block faulted turbidites: an Upper Jurassic-Lower Cretaceous subtle play-potential in the Central Graben

    Energy Technology Data Exchange (ETDEWEB)

    Gregersen, U.; Rasmussen, E.S.

    1998-10-01

    The Gertrud Graben, in the Danish Central Graben, was formed during Early Volgain by extensional block rotation, bounded by a series of NW-SE trending normal faults. The post-rift topography, formed after the Early Volgian rift pulse, controlled the depocenteres of Volgian-Ryazanian turbidites. The turbidites are interbedded in the Farsund Formation. Seismic correlation to basin marginal turbidite sand in the Jeppe-1 and Gwen-2 wells suggest, that high amplitude horizons and high acoustic impedance values in the depocenter of the turbidites probably reflect accumulation of sand-rich turbidites. The high amplitude and impedance values, calculated from seismic inversion, are locally concentrated in minor closures. A short flat impedance horizon within the turbidite depocenter and below a closure possible indicates hydrocarbon accumulation, adjacent to a well-known Jurassic source-rock (the `Hot Unit`) in the Central Graben area. The turbidites seem to have been transported mainly from the north, possibly from the Mandal High or Piggvar Terrace areas. Subsequent Late Ryazanian block faulting and local compressional tectonics caused erosional truncation of upper parts of the turbidites on footwall blocks, but preserved parts of the basin axial turbidites from erosion in the hanging wall positions. (au) 23 fig., 22 refs.

  2. Concatenated hERG1 tetramers reveal stoichiometry of altered channel gating by RPR-260243.

    Science.gov (United States)

    Wu, Wei; Gardner, Alison; Sanguinetti, Michael C

    2015-01-01

    Activation of human ether-a-go-go-related gene 1 (hERG1) K(+) channels mediates repolarization of action potentials in cardiomyocytes. RPR-260243 [(3R,4R)-4-[3-(6-methoxy-quinolin-4-yl)-3-oxo-propyl]-1-[3-(2,3,5-trifluorophenyl)-prop-2-ynyl]-piperidine-3-carboxylic acid] (RPR) slows deactivation and attenuates inactivation of hERG1 channels. A detailed understanding of the molecular mechanism of hERG1 agonists such as RPR may facilitate the design of more selective and potent compounds for prevention of arrhythmia associated with abnormally prolonged ventricular repolarization. RPR binds to a hydrophobic pocket located between two adjacent hERG1 subunits, and, hence, a homotetrameric channel has four identical RPR binding sites. To investigate the stoichiometry of altered channel gating induced by RPR, we constructed and characterized tetrameric hERG1 concatemers containing a variable number of wild-type subunits and subunits containing a point mutation (L553A) that rendered the channel insensitive to RPR, ostensibly by preventing ligand binding. The slowing of deactivation by RPR was proportional to the number of wild-type subunits incorporated into a concatenated tetrameric channel, and four wild-type subunits were required to achieve maximal slowing of deactivation. In contrast, a single wild-type subunit within a concatenated tetramer was sufficient to achieve half of the maximal RPR-induced shift in the voltage dependence of hERG1 inactivation, and maximal effect was achieved in channels containing three or four wild-type subunits. Together our findings suggest that the allosteric modulation of channel gating involves distinct mechanisms of coupling between drug binding and altered deactivation and inactivation.

  3. Functional characterization of the Chlamydomonas reinhardtii ERG3 ortholog, a gene involved in the biosynthesis of ergosterol.

    Directory of Open Access Journals (Sweden)

    Kristy M Brumfield

    Full Text Available BACKGROUND: The predominant sterol in the membranes of the alga Chlamydomonas reinhardtii is ergosterol, which is commonly found in the membranes of fungi, but is rarely found in higher plants. Higher plants and fungi synthesize sterols by different pathways, with plants producing cycloartenol as a precursor to end-product sterols, while non-photosynthesizing organisms like yeast and humans produce lanosterol as a precursor. Analysis of the C. reinhardtii genome sequence reveals that this algae is also likely to synthesize sterols using a pathway resembling the higher plant pathway, indicating that its sterols are synthesized somewhat differently than in fungi. The work presented here seeks to establish experimental evidence to support the annotated molecular function of one of the sterol biosynthetic genes in the Chlamydomonas genome. METHODOLOGY/PRINCIPAL FINDINGS: A gene with homology to the yeast sterol C-5 desaturase, ERG3, is present in the Chlamydomonas genome. To test whether the ERG3 ortholog of C. reinhardtii encodes a sterol C-5 desaturase, Saccharomyces cerevisiae ERG3 knockout strains were created and complemented with a plasmid expressing the Chlamydomonas ERG3. Expression of C. reinhardtii ERG3 cDNA in erg3 null yeast was able to restore ergosterol biosynthesis and reverse phenotypes associated with lack of ERG3 function. CONCLUSIONS/SIGNIFICANCE: Complementation of the yeast erg3 null phenotypes strongly suggests that the gene annotated as ERG3 in C. reinhardtii functions as a sterol C-5 desaturase.

  4. JURASSIC PALAEOGEOGRAPHY OF THE TRANSDANUBIAN CENTRAL RANGE (HUNGARY

    Directory of Open Access Journals (Sweden)

    ATTILA VÖRÖS

    1998-03-01

    Full Text Available The Transdanubian Central Range (TCR is a flattened range of hills in northern Transdanubia (Hungary, formed mainly by Mesozoic carbonate rocks showing strong facies similarities with the Southern Alps and the Austroalpine domain. The Jurassic system is divided into several formations of predominantly pelagic limestones. Ammonoids are frequent and were collected bed-by-bed in numerous sections, providing an excellent biostratigraphic resolution. The thickness of the Jurassic system is usually small but changes along the strike of the TCR. It reaches a maximum thickness of 500 m in the western part; is very variable (10-400 m in the central segment (Bakony Mts. and rather low (less than 100 m in the east (Gerecse. In the Bakony segment, the thickness variation reflects the strongly dissected topography of the Jurassic sea-floor. Synsedimentary tectonics is dominated by normal faults; tilted blocks and listric faults may be inferred only in the east.Five main steps were identified in the palaeogeographic evolution: 1 Late Hettangian: carbonate oolitic shoals prevail, except for a few sites where non-deposition or neritic sediments occur. 2 Sinemurian and Pliensbachian: tectonic disintegration resulted in an intricate pattern of submarine horsts and intervening basins, with condensed sedimentation or non-deposition on the horsts and thicker, continuous sedimentary sequences in the basins. The submarine topographic highs are surrounded by aprons of redeposited material (scarp breccias, brachiopod coquinas, crinoidal calcarenites, spiculitic cherty limestones, while pure or argillaceous limestones (Rosso Ammonitico prevail in the distal areas. 3 Early Toarcian: the Tethys-wide anoxic event is superimposed on the previous submarine bottom topography; the resulting black shales and sedimentary Mn-ores are concentrated on the western sides of some horsts. 4 Dogger to Early Malm: radiolarites with heterochronous lower and upper boundaries (Aalenian to

  5. Triaxial tests in Fontainebleau sand

    DEFF Research Database (Denmark)

    Latini, Chiara; Zania, Varvara

    2016-01-01

    The purpose of this internal report is to examine the influence of relative density on the strength and deformation characteristics of Fontainebleau sand. Compression triaxial tests were performed on saturated sand samples with different densities and initial confining pressure. Note that the tes......The purpose of this internal report is to examine the influence of relative density on the strength and deformation characteristics of Fontainebleau sand. Compression triaxial tests were performed on saturated sand samples with different densities and initial confining pressure. Note...... that the testing procedure and the data processing were carried out according to the specifications of ETCS-F1.97....

  6. Evaluating the Efficacy of ERG-Targeted Therapy in Vivo for Prostate Tumors

    Science.gov (United States)

    2015-04-01

    phenotypes alone and with AKT1 co-overexpression. The mechanism for ERG prostate phenotypes alone or in combination with AKT1 overexpression in vivo are...not been tested in vivo. The mechanism for any autochthonous tumor regression or stasis in vivo upon ERG inactivation is unknown. Study Design...using qPCR. IHC for cleaved caspase 3 (CC3) and Ki-67. Senescence markers such as p15, p16 , p21 and p27 will be analyzed by IHC and qPCR. In

  7. Experimentelle Untersuchungen zur Bedeutung von Wachstums- und Gerinnungsfaktoren bei der Entstehung maligner Ergüsse

    OpenAIRE

    Blume, Lars-Fabian

    2010-01-01

    Etwa 15-20 % aller Tumorpatienten entwickeln im Verlauf ihrer Erkrankung einen pleuralen oder peritonealen Erguss. In Anbetracht der kurzen Überlebenszeit von im Mittel 20 Wochen ist bei der Therapie maligner Ergüsse die Beseitigung der durch den Erguss hervorgerufenen Symptome und Beschwerden das zentrale Ziel. Bisher gibt es keine befriedigende Behandlung maligner Ergüsse, da nur eine begrenzte Patientenzahl körperlich in der Lage ist, sich einem invasivem Eingriff mit abschließender Pleuro...

  8. THE SIGNIFICANCE OF TESTING PREOPERATIVE VISUAL FUNCTION IN CATARACT USING LASER INTERFEROMETRIC VISUAL ACUITY AND ERG

    Institute of Scientific and Technical Information of China (English)

    1991-01-01

    Tests of preoperative visual function and prediction of postoperative E chart visual acuity(ECVA) using laser interferometric visual acuity(LIVA) and electroretinogram(ERG) were performed in 16 cases(19 eyes) of cataract. The results showed that the coincident rate between preoperative LIVA and postoperative ECVA was 63.2%, and there was a parallel correlation between preoperative amplitude of photopic ERG b-wave and postoperative ECVA in 79.0% of the eyes. Comparing these two methods, the test of LIVA ...

  9. The Jurassic of Denmark and Greenland: key elements in the reconstruction of the North Atlantic Jurassic rift system

    Directory of Open Access Journals (Sweden)

    Surlyk, Finn

    2003-10-01

    Full Text Available The Jurassic succession of Denmark is largely confined to the subsurface with the exception of exposures on the island of Bornholm in the Baltic Sea. In East Greenland, in contrast, the Jurassic is extensively exposed. Comparison of basin evolution in the two regions, which now occur on two separate plates, thus relies on highly different datasets. It is possible nevertheless to construct an integrated picture allowing testing of hypotheses concerning basin evolution, regional uplift, onset and climax of rifting, relative versus eustatic sea-level changes and sequence stratigraphic subdivision and correlation. On a smaller scale, it is possible to compare the signatures of sequence stratigraphic surfaces as seen on well logs, in cores and at outcrop and of sequences recognised and defined on the basis of very different data types. Breakdown of the successions into tectonostratigraphic megasequences highlights the high degree of similarity in overall basin evolution and tectonic style. An important difference, however, lies in the timing. Major events such as late Early - Middle Jurassic uplift, followed by onset of rifting, basin reorganisation and rift climax were delayed in East Greenland relative to the Danish region. This has important implications both for regional reconstructions of the rift system and for the understanding and testing of classical sequence stratigraphic concepts involving eustatic versus tectonic controls of basin evolution and stratigraphy.

  10. Temporal patterns in disparity and diversity of the Jurassic ammonoids of southern Germany

    Directory of Open Access Journals (Sweden)

    M. S. Simon

    2011-02-01

    Full Text Available A morphometric analysis of the characteristic whorl cross-sections of 1,200 Jurassic ammonoid species from southern Germany enabled us to characterise their morphospace. The successive Jurassic ammonoid faunas of southern Germany show characteristic patterns in morphospace occupation. While Early and Middle Jurassic ammonoids occupy limited areas of the morphospace range, the Late Jurassic ammonoids cover the entire spectrum. The ammonoids are characterised by an overall increase of both taxonomic diversity and morphological disparity in the course of the Jurassic. Strong fluctuations occur until the middle Late Jurassic, followed by a diversity decrease in the early Kimmeridgian and a disparity reduction in the early Tithonian. While diversity and disparity show similar progression during most of the Early Jurassic, they diverge subsequently and show only poor correlation until the end of the Jurassic. Particularly in the Middle Jurassic diversity and sea level changes correlate strongly. Neither temporal patterns in diversity nor disparity support the hypothesis of a mass extinction event in the early Toarcian. Significant changes in diversity and disparity in the early Callovian support a putative migration event of Boreal ammonoids into the Tethyan realm. doi:10.1002/mmng.201000016

  11. Geochemistry evidence for depositional settings and provenance of Jurassic argillaceous rocks of Jiyuan Basin, North China

    Indian Academy of Sciences (India)

    Yao Meng; Deshun Zheng; Minglong Li

    2017-02-01

    This paper aims to discuss the depositional settings and provenances for the Jurassic in Jiyuan basin, North China, based on the rare earth element (REE) and trace element features of 16 Jurassic argillaceous rock samples from the Anyao, Yangshuzhuang and Ma’ao Formations, respectively. Generally, geochemical analysis results show that chondrite-normalised REE distribution patterns of all the three formations are characterised by light-REE (LREE) enrichment, moderately negative Eu anomalies, slightly negative Ce anomalies, and strong fractionation between LREE and heavy-REE (HREE). Trace element proxies V/(V+Ni), Ceanom index, Ce/La, Sr/Ba, and Sr/Cu indicate a weak oxidation–reduction environment, progressively decreasing reducibility and water depth from the bottom up during Jurassic in Jiyuan basin. Palaeoclimate varied from humid in the Early Jurassic to arid in the Middle Jurassic, corresponding with the variations of palaeoredox and palaeosalinity. The provenances of Jurassic rocks in Jiyuan basin are mainly from felsic sources related to active continental margin and continental island arc. The Early–Middle Jurassic (Anyao and Yangshuzhuang Formations) provenances are mainly derived from North Qinling and partially from the eroded recycled felsic sedimentary covers of Taihang Mountain. In the late stage of Middle Jurassic (Ma’ao Formation), Taihang Mountain has been the primary source to Jiyuan basin. We conclude that the Jurassic rocks of Jiyuan basin reveal the progressive uplift and denudation processes of the Taihang Mountain.

  12. Propofol inhibits hERG K(+) channels and enhances the inhibition effects on its mutations in HEK293 cells.

    Science.gov (United States)

    Han, Sheng-Na; Jing, Ying; Yang, Lin-Lin; Zhang, Zhao; Zhang, Li-Rong

    2016-11-15

    QT interval prolongation, a potential risk for arrhythmias, may result from gene polymorphisms relevant to cardiomyocyte repolarization. Another noted cause of QT interval prolongation is the administration of chemical compounds such as anesthetics, which may affect a specific type of cardiac K(+) channel encoded by the human ether-a-go-go-related gene (hERG). hERG K(+) current was recorded using whole-cell patch clamp in human embryonic kidney (HEK293) cells expressing wild type (WT) or mutated hERG channels. Expression of hERG K(+) channel proteins was evaluated using western blot and confirmed by fluorescent staining and imaging. Computational modeling was adopted to identify the possible binding site(s) of propofol with hERG K(+) channels. Propofol had a significant inhibitory effect on WT hERG K(+) currents in a concentration-dependent manner, with a half-maximal inhibitory concentration (IC50) of 60.9±6.4μM. Mutations in drug-binding sites (Y652A or F656C) of the hERG channel were found to attenuate hERG current blockage by propofol. However, propofol did not inhibit the trafficking of hERG protein to the cell membrane. Meanwhile, for the three selective hERG K(+) channel mutant heterozygotes WT/Q738X-hERG, WT/A422T-hERG, and WT/H562P-hERG, the IC50 of propofol was calculated as 14.2±2.8μM, 3.3±1.2μM, and 5.9±1.9μM, respectively, which were much lower than that for the wild type. These findings indicate that propofol may potentially increase QT interval prolongation risk in patients via direct inhibition of the hERG K(+) channel, especially in those with other concurrent triggering factors such as hERG gene mutations. Copyright © 2016 Elsevier B.V. All rights reserved.

  13. TMPRSS2- driven ERG expression in vivo increases self-renewal and maintains expression in a castration resistant subpopulation.

    Directory of Open Access Journals (Sweden)

    Orla M Casey

    Full Text Available Genomic rearrangements commonly occur in many types of cancers and often initiate or alter the progression of disease. Here we describe an in vivo mouse model that recapitulates the most frequent rearrangement in prostate cancer, the fusion of the promoter region of TMPRSS2 with the coding region of the transcription factor, ERG. A recombinant bacterial artificial chromosome including an extended TMPRSS2 promoter driving genomic ERG was constructed and used for transgenesis in mice. TMPRSS2-ERG expression was evaluated in tissue sections and FACS-fractionated prostate cell populations. In addition to the anticipated expression in luminal cells, TMPRSS2-ERG was similarly expressed in the Sca-1(hi/EpCAM(+ basal/progenitor fraction, where expanded numbers of clonogenic self-renewing progenitors were found, as assayed by in vitro sphere formation. These clonogenic cells increased intrinsic self renewal in subsequent generations. In addition, ERG dependent self-renewal and invasion in vitro was demonstrated in prostate cell lines derived from the model. Clinical studies have suggested that the TMPRSS2-ERG translocation occurs early in prostate cancer development. In the model described here, the presence of the TMPRSS2-ERG fusion alone was not transforming but synergized with heterozygous Pten deletion to promote PIN. Taken together, these data suggest that one function of TMPRSS2-ERG is the expansion of self-renewing cells, which may serve as targets for subsequent mutations. Primary prostate epithelial cells demonstrated increased post transcriptional turnover of ERG compared to the TMPRSS2-ERG positive VCaP cell line, originally isolated from a prostate cancer metastasis. Finally, we determined that TMPRSS2-ERG expression occurred in both castration-sensitive and resistant prostate epithelial subpopulations, suggesting the existence of androgen-independent mechanisms of TMPRSS2 expression in prostate epithelium.

  14. TMPRSS2/ERG promotes epithelial to mesenchymal transition through the ZEB1/ZEB2 axis in a prostate cancer model.

    Directory of Open Access Journals (Sweden)

    Orit Leshem

    Full Text Available Prostate cancer is the most common non-dermatologic malignancy in men in the Western world. Recently, a frequent chromosomal aberration fusing androgen regulated TMPRSS2 promoter and the ERG gene (TMPRSS2/ERG was discovered in prostate cancer. Several studies demonstrated cooperation between TMPRSS2/ERG and other defective pathways in cancer progression. However, the unveiling of more specific pathways in which TMPRSS2/ERG takes part, requires further investigation. Using immortalized prostate epithelial cells we were able to show that TMPRSS2/ERG over-expressing cells undergo an Epithelial to Mesenchymal Transition (EMT, manifested by acquisition of mesenchymal morphology and markers as well as migration and invasion capabilities. These findings were corroborated in vivo, where the control cells gave rise to discrete nodules while the TMPRSS2/ERG-expressing cells formed malignant tumors, which expressed EMT markers. To further investigate the general transcription scheme induced by TMPRSS2/ERG, cells were subjected to a microarray analysis that revealed a distinct EMT expression program, including up-regulation of the EMT facilitators, ZEB1 and ZEB2, and down-regulation of the epithelial marker CDH1(E-Cadherin. A chromatin immunoprecipitation assay revealed direct binding of TMPRSS2/ERG to the promoter of ZEB1 but not ZEB2. However, TMPRSS2/ERG was able to bind the promoters of the ZEB2 modulators, IL1R2 and SPINT1. This set of experiments further illuminates the mechanism by which the TMPRSS2/ERG fusion affects prostate cancer progression and might assist in targeting TMPRSS2/ERG and its downstream targets in future drug design efforts.

  15. A sand wave simulation model

    NARCIS (Netherlands)

    Nemeth, A.A.; Hulscher, S.J.M.H.; Damme, van R.M.J.

    2003-01-01

    Sand waves form a prominent regular pattern in the offshore seabeds of sandy shallow seas. A two dimensional vertical (2DV) flow and morphological numerical model describing the behaviour of these sand waves has been developed. The model contains the 2DV shallow water equations, with a free water su

  16. Regeneration of dredged sand waves

    NARCIS (Netherlands)

    Hulscher, Suzanne J.M.H.; Knaapen, Michiel; Scholl, Olaf; Scholl, O.; Trenteseaux., A.; Garlan, T.

    2000-01-01

    Sand waves form a wavy pattern in the offshore sandy seabed. Since their crests reduce the navigability, it is important to know their evolution. A simple model is presented to estimate the recovery of sand wave amplitudes. This model is partially based on the similarity with sea ripples and

  17. Namibia : triaxial test on sand

    DEFF Research Database (Denmark)

    Steenfelt, Jørgen S.; Jacobsen, Kim P.

    In connection with a harbour project the friction angle of a fine sand is required. On Friday 13 March 1998 the Danish Geotechnical Institute (DGI) delivered app. 2.5 kg sand for testing at the Geotechnical Engineering Laboratory, Aalborg University. The present Data Report summarises the results...

  18. Sand swimming lizard: sandfish

    CERN Document Server

    Maladen, Ryan D; Kamor, Adam; Goldman, Daniel I

    2009-01-01

    We use high-speed x-ray imaging to reveal how a small (~10cm) desert dwelling lizard, the sandfish (Scincus scincus), swims within a granular medium [1]. On the surface, the lizard uses a standard diagonal gait, but once below the surface, the organism no longer uses limbs for propulsion. Instead it propagates a large amplitude single period sinusoidal traveling wave down its body and tail to propel itself at speeds up to ~1.5 body-length/sec. Motivated by these experiments we study a numerical model of the sandfish as it swims within a validated soft sphere Molecular Dynamics granular media simulation. We use this model as a tool to understand dynamics like flow fields and forces generated as the animal swims within the granular media. [1] Maladen, R.D. and Ding, Y. and Li, C. and Goldman, D.I., Undulatory Swimming in Sand: Subsurface Locomotion of the Sandfish Lizard, Science, 325, 314, 2009

  19. The Influence of Brightness on Functional Assessment by mfERG

    DEFF Research Database (Denmark)

    Christiansen, A T; Kiilgaard, J F; Smith, M

    2012-01-01

    To determine the effect of membrane brightness on multifocal electroretinograms (mfERGs), we implanted poly lactic-co-glycolic acid (PLGA) membranes in the subretinal space of 11 porcine eyes. We compared membranes with their native shiny white color with membranes that were stained with a blue dye...

  20. Modelling the mechanism of GR/c-Jun/Erg crosstalk in apoptosis of acute lymphoblastic leukaemia

    Directory of Open Access Journals (Sweden)

    Daphne eChen

    2012-11-01

    Full Text Available Acute lymphoblastic leukaemia (ALL is one of the most common forms of malignancy that occurs in lymphoid progenitor cells, particularly in children. Synthetic steroid hormones glucocorticoids (GCs are widely used as part of the ALL treatment regimens due to their apoptotic function, but their use also brings about various side effects and drug resistance. The identification of the molecular differences between the GCs responsive and resistant cells therefore are essential to decipher such complexity and can be used to improve therapy. However, the emerging picture is complicated as the activities of genes and proteins involved are controlled by multiple factors. By adapting the systems biology framework to address this issue, we here integrated the available knowledge together with experimental data via the building of a series of mathematical models. This rationale enabled us to unravel molecular interactions involving c-Jun in GC induced apoptosis and identify Erg as determinant for GC resistance. The results revealed an alternative potential mechanism where c-Jun may be an indirect GR target that is controlled via an upstream repressor protein. The models also highlight the importance of Erg for GR function, particularly in GC sensitive C7 cells where Erg directly regulates GR in agreement with our previous experimental results. Our models describe potential GR-controlled molecular mechanisms of c-Jun/Bim and Erg regulation. We also demonstrate the importance of using a systematic approach to translate human disease processes into computational models in order to derive information-driven new hypotheses.

  1. ERG--Energy Resources Game: Simulation Gaming of Regional Energy Management

    Science.gov (United States)

    Wolf, Lyle P.; Laessig, Robert E.

    1973-01-01

    ERG--the Energy Resources Game--is a computer based game which explores questions regarding regional energy supply and demand, such as population and economic growth goals; acceptable levels of dependence on imported energy; and acceptable levels of environmental impact. (JA)

  2. ERG11 mutations associated with azole resistance in Candida albicans isolates from vulvovaginal candidosis patients

    Institute of Scientific and Technical Information of China (English)

    Bin; Wang; Li-Hua; Huang; Ji-Xue; Zhao; Man; Wei; Hua; Fang; Dan-Yang; Wang; Hong-Fa; Wang; Ji-Gang; Yin; Mei; Xiang

    2015-01-01

    Objective: To investigate the azole susceptibility of Candida albicans(C.albicans)from vulvovaginal candidosis patients and to analyze the relationship between ERG11 gene mutations in these isolates and azole resistance.Methods: Three hundred and two clinical isolates of Candida species were collected.Azole susceptibility was tested in vitro in microdilution studies. The ERG11 genes of 17 isolates of C. albicans(2 susceptibles, 5 dose-dependent resistants and 10 resistants) were amplified and sequenced.Results: Of the 302 isolates collected, 70.2% were C. albicans, of which 8.5%, 3.8% and4.2% were resistant to fluconazole, itraconazole and voriconazole, respectively. In total,27 missense mutations were detected in ERG11 genes from resistant/susceptible dosedependent isolates. Among them, Y132 H, A114 S, and Y257 H substitutions were most prevalent and were known to cause fluconazole resistance. G464 S and F72 S also have been proved to cause fluconazole resistance. Two novel substitutions(T285A, S457P) in hotspot regions were identified.Conclusions: Twenty seven mutations in the ERG11 gene were identified in azoleresistant C. albicans isolates, which indicated a possible relation with the increase in resistance to azole drugs and the recurrence of vulvovaginal candidosis. The relationship of two novel substitutions(T285A, S457P) with fluconazole resistance needs to be further verified by site-directed mutagenesis.

  3. ERG11 mutations associated with azole resistance in Candida albicans isolates from vulvovaginal candidosis patients

    Institute of Scientific and Technical Information of China (English)

    Bin Wang; Li-Hua Huang; Ji-Xue Zhao; Man Wei; Hua Fang; Dan-Yang Wang; Hong-Fa Wang; Ji-Gang Yin; Mei Xiang

    2015-01-01

    Objective:To investigate the azole susceptibility of Candida albicans (C. albicans) from vulvovaginal candidosis patients and to analyze the relationship between ERG11 gene mutations in these isolates and azole resistance. Methods:Three hundred and two clinical isolates of Candida species were collected. Azole susceptibility was tested in vitro in microdilution studies. The ERG11 genes of 17 isolates of C. albicans (2 susceptibles, 5 dose-dependent resistants and 10 resistants) were amplified and sequenced. Results:Of the 302 isolates collected, 70.2%were C. albicans, of which 8.5%, 3.8%and 4.2%were resistant to fluconazole, itraconazole and voriconazole, respectively. In total, 27 missense mutations were detected in ERG11 genes from resistant/susceptible dose-dependent isolates. Among them, Y132H, A114S, and Y257H substitutions were most prevalent and were known to cause fluconazole resistance. G464S and F72S also has been proved to cause fluconazole resistance. Two novel substitutions (T285A, S457P) in hotspot regions were identified. Conclusions:Twenty seven mutations in the ERG11 gene were identified in azole-resistant C. albicans isolates, which indicated a possible relation with the increase in resistance to azole drugs and the recurrence of vulvovaginal candidosis. The relationship of two novel substitutions (T285A, S457P) with fluconazole resistance needs to be further verified by site-directed mutagenesis.

  4. Tubin: Sinfonie nr. 11 (ergänzt von Kaljo Raid) / Christoph Schlüren

    Index Scriptorium Estoniae

    Schlüren, Christoph

    1997-01-01

    Uuest heliplaadist "Tubin: Sinfonie nr. 11 (ergänzt von Kaljo Raid); Pärt: Nekrolog op. 5, Sinfonie nr. 1; Tüür: Searching for Roots, Insula deserta, Zeitraum. Königliches Philharmonisches Orchester Stockholm, Paavo Järvi". Virgin/EMI CD 5 45212 2 (WD:71'34") DDD

  5. Diagnostic Value of ERG in Prostate Needle Biopsies Containing Minute Cancer Foci

    Directory of Open Access Journals (Sweden)

    Bachurska Svitlana Y.

    2017-03-01

    Full Text Available Background: Prostate carcinoma (PC is the second most diagnosed cancer in men population worldwide. The small amount of the tissue in prostate needle biopsy is often sufficient for the correct interpretation. Novel antibodies, as ERG, could add to the diagnostic value of IHC study in analysing difficult core biopsies.

  6. Functional recovery after experimental RPE debridement, mfERG studies in a porcine model.

    Science.gov (United States)

    Sørensen, Nina Buus; Lassota, Nathan; Kyhn, Maria Voss; Prause, Jan Ulrik; Qvortrup, Klaus; la Cour, Morten; Kiilgaard, Jens

    2013-10-01

    The correlation between histologically identified regeneration of retinal pigment epithelium (RPE) and functional outcome measured by multifocal electroretinography (mfERG) following surgical debridement is examined in a porcine model. In humans, visual acuity is reduced in diseases with RPE loss such as RPE tears and geographic atrophy. Hypopigmented RPE is known to cover the lesion after RPE debridement in the pig, but it is unclear whether this leads to a return of photoreceptor function. RPE debridement was performed in ten pigs by vitrectomy and retinotomy, and by brushing the Bruch's membrane with a silicone catheter. Immediately following surgery (baseline) and after 2 and 6 weeks respectively, the animals were examined by mfERG, fundus photographs (FPs), fluorescein angiograms (FAs), and histopathology. The mfERG P1 amplitude was decreased 2 weeks (T₂) after surgery; it returned to baseline 6 weeks (T₆) after surgery. FPs, FAs, and histology showed partial repopulation of Bruch's membrane by hypopigmented RPE cells and atrophied outer segments at T₂. At T₆, normally pigmented RPE cells were identified, and the photoreceptor layer was restored. This is the first study to show that the histological regeneration of hypopigmented RPE correlates to a return of the retinal function, measured by mfERG.

  7. Tubin: Sinfonie nr. 11 (ergänzt von Kaljo Raid) / Christoph Schlüren

    Index Scriptorium Estoniae

    Schlüren, Christoph

    1997-01-01

    Uuest heliplaadist "Tubin: Sinfonie nr. 11 (ergänzt von Kaljo Raid); Pärt: Nekrolog op. 5, Sinfonie nr. 1; Tüür: Searching for Roots, Insula deserta, Zeitraum. Königliches Philharmonisches Orchester Stockholm, Paavo Järvi". Virgin/EMI CD 5 45212 2 (WD:71'34") DDD

  8. Nain's Hierarchy of Needs: An Alternative to Maslow's & ERG's Hierarchy of Needs

    OpenAIRE

    nain, bhavya

    2013-01-01

    This article gives reasons as to why Maslow's & ERG Theory of Needs is inaccurate. It also gives reasons why the same is inaccurate in an organizational perspective. The author also gives a alternative model of needs, namely the Nain Model, which is particularly applicable in an organizational perspective. This article has been written for those interested in Organizational Behaviour.

  9. A radiolabeled peptide ligand of the hERG channel, [125I]-BeKm-1

    DEFF Research Database (Denmark)

    Angelo, Kamilla; Korolkova, Yuliya V; Grunnet, Morten

    2003-01-01

    The wild-type scorpion toxin BeKm-1, which selectively blocks human ether-a-go-go related (hERG) channels, was radiolabeled with iodine at tyrosine 11. Both the mono- and di-iodinated derivatives were found to be biologically active. In electrophysiological patch-clamp recordings mono-[127I]-BeKm-1...

  10. Visual evoked potential (VEP) and multifocal electroretinogram (mfERG) in ocular syphilitic posterior segment inflammation.

    Science.gov (United States)

    Alexander, Philip; Wen, Yaqin; Baxter, Julia M; Tint, Naing L; Browning, Andrew C; Amoaku, Winfried M

    2012-10-01

    The aim of this study is to correlate multifocal electroretinogram (mfERG) and visual evoked potential (VEP) changes with visual acuity and clinical features in patients with posterior segment inflammation secondary to syphilis. A retrospective interventional case series of 4 patients with visual loss secondary to syphilitic uveitis is reported. The mfERG (P1) showed diminished amplitudes and prolonged latency in 7 affected eyes. Visual acuity rapidly improved 2 weeks after initiation of therapy. OCT demonstrated anatomical recovery at 1 month. In three patients, visual acuity was restored to 6/6 at 6-9 months but mfERG responses remained significantly reduced and delayed for 12-15 months before recovery to normal levels. One patient developed a retinal detachment, but achieved 6/9 vision at 30 months. VEP changes, interpreted in combination with mfERG responses, showed evidence of optic nerve involvement in 6 eyes. Ocular findings, including posterior placoid chorioretinitis, are important diagnostic features of secondary and tertiary syphilis. Visual acuity and clinical recovery occur early with appropriate diagnosis and treatment, and precede full electrophysiological recovery of the outer retina-RPE complex. Ophthalmologists have the opportunity to play a key role in undetected or missed diagnoses of syphilis, and with appropriate treatment the visual prognosis is excellent.

  11. Modeling the Mechanism of GR/c-Jun/Erg Crosstalk in Apoptosis of Acute Lymphoblastic Leukemia.

    Science.gov (United States)

    Chen, Daphne Wei-Chen; Krstic-Demonacos, Marija; Schwartz, Jean-Marc

    2012-01-01

    Acute lymphoblastic leukemia (ALL) is one of the most common forms of malignancy that occurs in lymphoid progenitor cells, particularly in children. Synthetic steroid hormones glucocorticoids (GCs) are widely used as part of the ALL treatment regimens due to their apoptotic function, but their use also brings about various side effects and drug resistance. The identification of the molecular differences between the GCs responsive and resistant cells therefore are essential to decipher such complexity and can be used to improve therapy. However, the emerging picture is complicated as the activities of genes and proteins involved are controlled by multiple factors. By adopting the systems biology framework to address this issue, we here integrated the available knowledge together with experimental data by building a series of mathematical models. This rationale enabled us to unravel molecular interactions involving c-Jun in GC induced apoptosis and identify Ets-related gene (Erg) as potential biomarker of GC resistance. The results revealed an alternative possible mechanism where c-Jun may be an indirect GR target that is controlled via an upstream repressor protein. The models also highlight the importance of Erg for GR function, particularly in GC sensitive C7 cells where Erg directly regulates GR in agreement with our previous experimental results. Our models describe potential GR-controlled molecular mechanisms of c-Jun/Bim and Erg regulation. We also demonstrate the importance of using a systematic approach to translate human disease processes into computational models in order to derive information-driven new hypotheses.

  12. 2010 oil sands performance report

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2011-07-01

    With the depletion of traditional energy resources and the rising demand for energy, oil sands have become an important energy resource for meeting energy needs. Oil sands are a mixture of water, sand, clay and bitumen which is recovered either through open pit mining or in situ drilling techniques. The bitumen is then converted into syncrude or sold to refineries for the production of gasoline, diesel or other products. Shell has oil sands operations in Alberta and the aim of this report is to present its 2010 performance in terms of CO2, water, tailings, land, and reclamation and engagement. This document covers several of Shell's operations in the Muskeg River and Jackpine mines, Scotford upgrader, Peace River, Orion, Seal, Cliffdale and Chipmunk. It provides useful information on Shell's oil sands performance to governments, environmental groups, First Nations, local communities and the public.

  13. Differential expression of hERG1 channel isoforms reproduces properties of native I(Kr and modulates cardiac action potential characteristics.

    Directory of Open Access Journals (Sweden)

    Anders Peter Larsen

    Full Text Available BACKGROUND: The repolarizing cardiac rapid delayed rectifier current, I(Kr, is composed of ERG1 channels. It has been suggested that two isoforms of the ERG1 protein, ERG1a and ERG1b, both contribute to I(Kr. Marked heterogeneity in the kinetic properties of native I(Kr has been described. We hypothesized that the heterogeneity of native I(Kr can be reproduced by differential expression of ERG1a and ERG1b isoforms. Furthermore, the functional consequences of differential expression of ERG1 isoforms were explored as a potential mechanism underlying native heterogeneity of action potential duration (APD and restitution. METHODOLOGY/PRINCIPAL FINDINGS: The results show that the heterogeneity of native I(Kr can be reproduced in heterologous expression systems by differential expression of ERG1a and ERG1b isoforms. Characterization of the macroscopic kinetics of ERG1 currents demonstrated that these were dependent on the relative abundance of ERG1a and ERG1b. Furthermore, we used a computational model of the ventricular cardiomyocyte to show that both APD and the slope of the restitution curve may be modulated by varying the relative abundance of ERG1a and ERG1b. As the relative abundance of ERG1b was increased, APD was gradually shortened and the slope of the restitution curve was decreased. CONCLUSIONS/SIGNIFICANCE: Our results show that differential expression of ERG1 isoforms may explain regional heterogeneity of I(Kr kinetics. The data demonstrate that subunit dependent changes in channel kinetics are important for the functional properties of ERG1 currents and hence I(Kr. Importantly, our results suggest that regional differences in the relative abundance of ERG1 isoforms may represent a potential mechanism underlying the heterogeneity of both APD and APD restitution observed in mammalian hearts.

  14. Sand harm in taklimakan Desert highway and sand control

    Institute of Scientific and Technical Information of China (English)

    HANZhiwen; WANGTao; SUNQingwei; DONGZhibao; WANGXunming

    2003-01-01

    Reputed as a wonderful achievement of the world’s highway construction history,the Taklimakan Desert highway is nor facing serious sand drift encroachment problems due to its 447-km-long passage of sand sea consisting of crescent dunes,barchan chains,compound transverse dune ridges and complex megadunes.To solve some technical problems in the protection of the highway from sang drift encroachment,desert experts have been conducting the theoretical and applied studies on sand movement laws;causes,severities and time-space differentiation of sand drift damages;and control ways including mechanical,chemical and biological measures.In this paper the authors give an overall summry on the research contents and recent progress in the control of sand drift damages in China and hold that the theoretical researc results and practices in the prevention of sand drift encroachment on the cross-desert highway represnt a breakthrough and has an cpoch-making significance.Since the construction of protective forest along the cross-desert highway requires large amount of ground water,what will be its environmental consequence and whether it can effectively halt sand drift encroachment on the highway forever are the questions to be studied urgently.

  15. Knocking Down TMPRSS2-ERG Fusion Oncogene by siRNA Could be an Alternative Treatment to Flutamide

    Directory of Open Access Journals (Sweden)

    Giorgia Urbinati

    2016-01-01

    Full Text Available Our purpose was to develop a new pharmacological approach for the treatment of prostate cancer (PCa, the most common neoplasia in men. Recently, we developed siRNA against the fusion oncogene TMPRSS2-ERG found in 50% of patients and showed an antitumoral activity in animal model. Herein, we want to compare or combine the developed siRNA to flutamide (FLU, one of the gold-standard treatment of PCa. Therefore, concomitant or subsequent association of FLU to siRNA TMPRSS2-ERG was performed in VCaP cells and in SCID mice bearing xenografted VCaP tumors. ERG, androgen receptor, cleaved-caspase-3 as well as phase 1 and 2 drug-metabolizing enzymes were investigated within tumors. We observed similar results in terms of TMPRSS2-ERG knock-down and cell viability impairment for all distinct schedules of administration. The association of siRNA TMPRSS2-ERG-squalene nanoparticles with flutamide displayed similar tumor growth inhibition as mice treated with siRNA TMPRSS2-ERG-squalene nanoparticles alone and was paralleled with modification of expression of ERG, androgen receptor, and cleaved-caspase-3. Phase 1 and 2 enzymes were essentially affected by FLU and reverted when combined with squalenoylated siRNA. In conclusion, these results confirm the therapeutic effectiveness of squalenoyl siRNA nanomedicine for PCa based on siRNA TMPRSS2-ERG.

  16. ERG and FLI1 binding sites demarcate targets for aberrant epigenetic regulation by AML1-ETO in acute myeloid leukemia

    NARCIS (Netherlands)

    Martens, Joost H. A.; Mandoli, Amit; Simmer, Femke; Wierenga, Bart-Jan; Saeed, Sadia; Singh, Abhishek A.; Altucci, Lucia; Vellenga, Edo; Stunnenberg, Hendrik G.

    2012-01-01

    ERG and FLI1 are closely related members of the ETS family of transcription factors and have been identified as essential factors for the function and maintenance of normal hematopoietic stem cells. Here genome-wide analysis revealed that both ERG and FLI1 occupy similar genomic regions as AML1-ETO

  17. An extended 15 Hz ERG protocol (1): the contributions of primary and secondary rod pathways and the cone pathway

    NARCIS (Netherlands)

    Bijveld, M.M.C.; Kappers, A.M.L.|info:eu-repo/dai/nl/07445370X; Riemslag, F.C.C.; Hoeben, F.P.; Vrijling, A.C.L.; van Genderen, M.M.

    2011-01-01

    The minimum in the amplitude versus flash strength curve of dark-adapted 15 Hz electroretinograms (ERGs) has been attributed to interactions between the primary and secondary rod pathways. The 15 Hz ERGs can be used to examine the two rod pathways in patients. However, previous studies suggested

  18. TMPRSS2-ERG fusion, a common genomic alteration in prostate cancer activates C-MYC and abrogates prostate epithelial differentiation.

    Science.gov (United States)

    Sun, C; Dobi, A; Mohamed, A; Li, H; Thangapazham, R L; Furusato, B; Shaheduzzaman, S; Tan, S-H; Vaidyanathan, G; Whitman, E; Hawksworth, D J; Chen, Y; Nau, M; Patel, V; Vahey, M; Gutkind, J S; Sreenath, T; Petrovics, G; Sesterhenn, I A; McLeod, D G; Srivastava, S

    2008-09-11

    The high prevalence of TMPRSS2-ERG rearrangements ( approximately 60%) in prostate cancer (CaP) leads to androgenic induction of the ETS-related gene (ERG) expression. However, the biological functions of ERG overexpression in CaP remain to be understood. ERG knockdown in TMPRSS2-ERG expressing CaP cells induced striking morphological changes and inhibited cell growth both in cell culture and SCID mice. Evaluation of the transcriptome and specific gene promoters in ERG siRNA-treated cells and investigation of gene expression signatures of human prostate tumors revealed ERG-mediated activation of C-MYC oncogene and the repression of prostate epithelial differentiation genes (PSA and SLC45A3/Prostein). Taken together, these data combining cell culture and animal models and human prostate tumors reveal that ERG overexpression in prostate tumor cells may contribute to the neoplastic process by activating C-MYC and by abrogating prostate epithelial differentiation as indicated by prostate epithelial specific markers.

  19. Inhibition of hERG Potassium Channels by Celecoxib and Its Mechanism

    Science.gov (United States)

    Frolov, Roman V.; Ignatova, Irina I.; Singh, Satpal

    2011-01-01

    Background Celecoxib (Celebrex), a widely prescribed selective inhibitor of cyclooxygenase-2, can modulate ion channels independently of cyclooxygenase inhibition. Clinically relevant concentrations of celecoxib can affect ionic currents and alter functioning of neurons and myocytes. In particular, inhibition of Kv2.1 channels by celecoxib leads to arrhythmic beating of Drosophila heart and of rat heart cells in culture. However, the spectrum of ion channels involved in human cardiac excitability differs from that in animal models, including mammalian models, making it difficult to evaluate the relevance of these observations to humans. Our aim was to examine the effects of celecoxib on hERG and other human channels critically involved in regulating human cardiac rhythm, and to explore the mechanisms of any observed effect on the hERG channels. Methods and Results Celecoxib inhibited the hERG, SCN5A, KCNQ1 and KCNQ1/MinK channels expressed in HEK-293 cells with IC50s of 6.0 µM, 7.5 µM, 3.5 µM and 3.7 µM respectively, and the KCND3/KChiP2 channels expressed in CHO cells with an IC50 of 10.6 µM. Analysis of celecoxib's effects on hERG channels suggested gating modification as the mechanism of drug action. Conclusions The above channels play a significant role in drug-induced long QT syndrome (LQTS) and short QT syndrome (SQTS). Regulatory guidelines require that all new drugs under development be tested for effects on the hERG channel prior to first administration in humans. Our observations raise the question of celecoxib's potential to induce cardiac arrhythmias or other channel related adverse effects, and make a case for examining such possibilities. PMID:22039467

  20. Allosteric modulators of the hERG K{sup +} channel

    Energy Technology Data Exchange (ETDEWEB)

    Yu, Zhiyi, E-mail: z.yu@lacdr.leidenuniv.nl; Klaasse, Elisabeth, E-mail: elisabethklaasse@hotmail.com; Heitman, Laura H., E-mail: l.h.heitman@lacdr.leidenuniv.nl; IJzerman, Adriaan P., E-mail: ijzerman@lacdr.leidenuniv.nl

    2014-01-01

    Drugs that block the cardiac K{sup +} channel encoded by the human ether-à-go-go gene (hERG) have been associated with QT interval prolongation leading to proarrhythmia, and in some cases, sudden cardiac death. Because of special structural features of the hERG K{sup +} channel, it has become a promiscuous target that interacts with pharmaceuticals of widely varying chemical structures and a reason for concern in the pharmaceutical industry. The structural diversity suggests that multiple binding sites are available on the channel with possible allosteric interactions between them. In the present study, three reference compounds and nine compounds of a previously disclosed series were evaluated for their allosteric effects on the binding of [{sup 3}H]astemizole and [{sup 3}H]dofetilide to the hERG K{sup +} channel. LUF6200 was identified as an allosteric inhibitor in dissociation assays with both radioligands, yielding similar EC{sub 50} values in the low micromolar range. However, potassium ions increased the binding of the two radioligands in a concentration-dependent manner, and their EC{sub 50} values were not significantly different, indicating that potassium ions behaved as allosteric enhancers. Furthermore, addition of potassium ions resulted in a concentration-dependent leftward shift of the LUF6200 response curve, suggesting positive cooperativity and distinct allosteric sites for them. In conclusion, our investigations provide evidence for allosteric modulation of the hERG K{sup +} channel, which is discussed in the light of findings on other ion channels. - Highlights: • Allosteric modulators on the hERG K{sup +} channel were evaluated in binding assays. • LUF6200 was identified as a potent allosteric inhibitor. • Potassium ions were found to behave as allosteric enhancers. • Positive cooperativity and distinct allosteric sites for them were proposed.

  1. Latest Jurassic-early Cretaceous regressive facies, northeast Africa craton

    Energy Technology Data Exchange (ETDEWEB)

    van Houten, F.B.

    1980-06-01

    Nonmarine to paralic detrital deposits accumulated in six large basins between Algeria and the Arabo-Nubian shield during major regression in latest Jurassic and Early Cretaceous time. The Ghadames Sirte (north-central Libya), and Northern (Egypt) basins lay along the cratonic margin of northeastern Africa. The Murzuk, Kufra, and Southern (Egypt) basins lay in the south within the craton. Data for reconstructing distribution, facies, and thickness of relevant sequences are adequate for the three northern basins only. High detrital influx near the end of Jurassic time and in mid-Cretaceous time produced regressive nubian facies composed largely of low-sinuosity stream and fahdelta deposits. In the west and southwest the Ghadames, Murzuk, and Kufra basins were filled with a few hundred meters of detritus after long-continued earlier Mesozoic aggradation. In northern Egypt the regressive sequence succeeded earlier Mesozoic marine sedimentation; in the Sirte and Southern basins correlative deposits accumulated on Precambrian and Variscan terranes after earlier Mesozoic uplift and erosion. Waning of detrital influx into southern Tunisia and adjacent Libya in the west and into Israel in the east initiated an Albian to early Cenomanian transgression of Tethys. By late Cenomanian time it had flooded the entire cratonic margin, and spread southward into the Murzuk and Southern basins, as well as onto the Arabo-Nubian shield. Latest Jurassic-earliest Cretaceous, mid-Cretaceous, and Late Cretaceous transgressions across northeastern Africa recorded in these sequences may reflect worldwide eustatic sea-level rises. In contrast, renewed large supply of detritus during each regression and a comparable subsidence history of intracratonic and marginal basins imply regional tectonic control. 6 figures.

  2. Newly discovered Jurassic skarnfields in the Ecuadorian Andes

    Science.gov (United States)

    Litherland, M.; Fortey, N. J.; Beddoe-Stephens, B.

    1992-08-01

    A series of calcic magnetite skarn klippen in the north of the Cordillera Real are interpreted as erosional relics of a great skarn sheet, over 150 km long, formed by thrusting of island-arc type sediments and volcanics over the Jurassic Azafran batholith during an accretion event. The skarns are contrasted petrographically and compositionally with those of the Nambija field in the south of the Cordillera, which probably relates to the same chain of batholiths. However, the Nambija skarns are autochthonous and rich in gold, with Au:Ag ratios in the region of 20:1, whereas those to the north are allochthonous and relatively barren.

  3. An arboreal docodont from the Jurassic and mammaliaform ecological diversification

    Science.gov (United States)

    Meng, Qing-Jin; Ji, Qiang; Zhang, Yu-Guang; Liu, Di; Grossnickle, David M.; Luo, Zhe-Xi

    2015-02-01

    A new docodontan mammaliaform from the Middle Jurassic of China has skeletal features for climbing and dental characters indicative of an omnivorous diet that included plant sap. This fossil expands the range of known locomotor adaptations in docodontans to include climbing, in addition to digging and swimming. It further shows that some docodontans had a diet with a substantial herbivorous component, distinctive from the faunivorous diets previously reported in other members of this clade. This reveals a greater ecological diversity in an early mammaliaform clade at a more fundamental taxonomic level not only between major clades as previously thought.

  4. Tectonic forcing of early to middle jurassic seawater Sr/Ca

    DEFF Research Database (Denmark)

    Ullmann, Clemens Vinzenz; Hesselbo, Stephen P.; Korte, Christoph

    2013-01-01

    The Jurassic Period (ca. 201–145 Ma) is marked by fundamental reorganizations of paleogeography, paleoceanography, ecosystems, and the progressive shift from aragonite to calcite as the favored marine biogenic carbonate polymorph. Sr/Ca ratios of well-preserved Jurassic oysters and belemnites from...

  5. The Tendaguru Formation (Late Jurassic to Early Cretaceous, southern Tanzania: definition, palaeoenvironments, and sequence stratigraphy

    Directory of Open Access Journals (Sweden)

    R. Bussert

    2009-08-01

    Full Text Available The well-known Late Jurassic to Early Cretaceous Tendaguru Beds of southern Tanzania have yielded fossil plant remains, invertebrates and vertebrates, notably dinosaurs, of exceptional scientific importance. Based on data of the German-Tanzanian Tendaguru Expedition 2000 and previous studies, and in accordance with the international stratigraphic guide, we raise the Tendaguru Beds to formational rank and recognise six members (from bottom to top: Lower Dinosaur Member, Nerinella Member, Middle Dinosaur Member, Indotrigonia africana Member, Upper Dinosaur Member, and Rutitrigonia bornhardti-schwarzi Member. We characterise and discuss each member in detail in terms of derivation of name, definition of a type section, distribution, thickness, lithofacies, boundaries, palaeontology, and age. The age of the whole formation apparently ranges at least from the middle Oxfordian to the Valanginian through Hauterivian or possibly Aptian. The Tendaguru Formation constitutes a cyclic sedimentary succession, consisting of three marginal marine, sandstone-dominated depositional units and three predominantly coastal to tidal plain, fine-grained depositional units with dinosaur remains. It represents four third-order sequences, which are composed of transgressive and highstand systems tracts. Sequence boundaries are represented by transgressive ravinement surfaces and maximum flooding surfaces. In a more simple way, the depositional sequences can be subdivided into transgressive and regressive sequences/systems tracts. Whereas the transgressive systems tracts are mainly represented by shallow marine shoreface, tidal channel and sand bar sandstones, the regressive systems tracts predominantly consist of shallow tidal channel, tidal flat, and marginal lagoonal to supratidal deposits. doi:10.1002/mmng.200900004

  6. A New Theropod Dinosaur from the Middle Jurassic of Lufeng, Yunnan, China

    Institute of Scientific and Technical Information of China (English)

    WU Xiao-chun; Philip J.CURRIE; DONG Zhiming; PAN Shigang; WANG Tao

    2009-01-01

    A new theropod dinosaur,Shidaisaurusjinae gen.et sp.nov.,has been described on the basis of an incomplete skeleton.The specimen was found near the base of the Upper Lufeng Formation(early Middle Jurassic)in Yunnan,China.It is the first theropod dinosaur from the Middle Jurassic of Yunnan.Shidaisaurus jinae is distinguishable from other Jurassic theropods by certain features from the braincase,axis,and pelvic girdle.The absence of any pleurocoels in the axis or in any anterior dorsal vertebrae suggests that the new Lufeng theropod is relatively primitive and more plesiomorphic than most of the Middle to Late Jurassic theropods from China.Most Chinese taxa of Jurassic theropod dinosaurs have not been well described;a further detailed study will be necessary for us to determine their phylogenetic relationships with Shidaisaurus jinae.

  7. Sand engine quells the coast's hunger for sand

    NARCIS (Netherlands)

    Van Dijk, T.

    2012-01-01

    An artificial peninsula at Ter Heijde is designed to feed the coast with sediment. Scientists are investigating whether this kind of sand engine could be the Netherlands’ answer to rising sea levels.

  8. Sand engine quells the coast's hunger for sand

    NARCIS (Netherlands)

    Van Dijk, T.

    2012-01-01

    An artificial peninsula at Ter Heijde is designed to feed the coast with sediment. Scientists are investigating whether this kind of sand engine could be the Netherlands’ answer to rising sea levels.

  9. Spectroscopic characterization of a Nigerian standard sand: Igbokoda sand

    CSIR Research Space (South Africa)

    Ojuri, OO

    2017-01-01

    Full Text Available the Middle Ordovician St. Peter Sandstone near Ottawa, Illinois, had been picked by the American Society for Testing and Materials (ASTM) as the reference sand to employ in testing cement and strength of concrete [9]. To the best of our knowledge... and magnetic resonance spectroscopic techniques due to its importance in cement, geotechnical/geo-environmental research in Nigeria. This should halt importation of standard silica sand for mortar and concrete testing...

  10. Transgression regression event element geochemistry records of southwestern Fujian in Late Triassic-Middle Jurassic

    Institute of Scientific and Technical Information of China (English)

    许中杰; 程日辉; 张莉; 王嘹亮

    2013-01-01

    Southwest Fujian area has experienced a large-scale transgression regression cycle in Late Triassic-Middle Jurassic and the maximum transgression has taken place in Early Jurassic. The migration and enrichment of geochemical element in the continuous fine-grained sediments in the basin recorded the paleosalinity and the paleodepth. The changes of paleosalinity and paleodepth indicate the sea(lake) level relative change in every period of Late Triassic-Middle Jurassic in southwestern Fujian. The relative change curve of sea(lake) level in southwestern Fujian is established based on the m value(m=100×w(MgO)/w(Al2 O3)) and the ratios of w(B)/w(Ga), w(Sr)/w(Ba) and w(Ca)/w(Mg). The curve indicates that level I sea-level relative change in southwestern Fujian is composed of the transgression in Late Triassic-Early Jurassic and the regression in the late period of Early Jurassic-Middle Jurassic. The level III sea-level relative change is frequent, which is composed by the lake level descent lake level rise lake level descent of Wenbin Shan formation in Late Triassic, the regression transgression regression of Lishan formation in Early Jurassic and the lake level rise lake level descent-lake level rise lake level descent of Zhangping formation in Middle Jurassic. The transgression regression cycle in southwestern Fujian is significantly controlled by the sea-level change in the north of South China Sea. The relative change curve trends of the level I sea-level in the north of South China Sea and the one in southwestern Fujian are the same. The maximum transgressions both occur in Early Jurassic. The level III sea-level curve reflects the fluctuation of a transgression and two regressions in the early period of Early Jurassic.

  11. Saltation of Non-Spherical Sand Particles

    Science.gov (United States)

    Wang, Zhengshi; Ren, Shan; Huang, Ning

    2014-01-01

    Saltation is an important geological process and the primary source of atmospheric mineral dust aerosols. Unfortunately, no studies to date have been able to precisely reproduce the saltation process because of the simplified theoretical models used. For example, sand particles in most of the existing wind sand movement models are considered to be spherical, the effects of the sand shape on the structure of the wind sand flow are rarely studied, and the effect of mid-air collision is usually neglected. In fact, sand grains are rarely round in natural environments. In this paper, we first analyzed the drag coefficients, drag forces, and starting friction wind speeds of sand grains with different shapes in the saltation process, then established a sand saltation model that considers the coupling effect between wind and the sand grains, the effect of the mid-air collision of sand grains, and the effect of the sand grain shape. Based on this model, the saltation process and sand transport rate of non-spherical sand particles were simulated. The results show that the sand shape has a significant impact on the saltation process; for the same wind speed, the sand transport rates varied for different shapes of sand grains by as much as several-fold. Therefore, sand shape is one of the important factors affecting wind-sand movement. PMID:25170614

  12. Amphibious flies and paedomorphism in the Jurassic period.

    Science.gov (United States)

    Huang, Diying; Nel, André; Cai, Chenyang; Lin, Qibin; Engel, Michael S

    2013-03-01

    The species of the Strashilidae (strashilids) have been the most perplexing of fossil insects from the Jurassic period of Russia and China. They have been widely considered to be ectoparasites of pterosaurs or feathered dinosaurs, based on the putative presence of piercing and sucking mouthparts and hind tibio-basitarsal pincers purportedly used to fix onto the host's hairs or feathers. Both the supposed host and parasite occur in the Daohugou beds from the Middle Jurassic epoch of China (approximately 165 million years ago). Here we analyse the morphology of strashilids from the Daohugou beds, and reach markedly different conclusions; namely that strashilids are highly specialized flies (Diptera) bearing large membranous wings, with substantial sexual dimorphism of the hind legs and abdominal extensions. The idea that they belong to an extinct order is unsupported, and the lineage can be placed within the true flies. In terms of major morphological and inferred behavioural features, strashilids resemble the recent (extant) and relict members of the aquatic fly family Nymphomyiidae. Their ontogeny are distinguished by the persistence in adult males of larval abdominal respiratory gills, representing a unique case of paedomorphism among endopterygote insects. Adult strashilids were probably aquatic or amphibious, shedding their wings after emergence and mating in the water.

  13. Triassic-Jurassic pteridosperms of Australasia: speciation, diversity and decline

    Energy Technology Data Exchange (ETDEWEB)

    Pattemore, G. A.; Rigby, J. F.; Playford, G.

    2015-07-01

    Pteridosperms are preserved abundantly in the Gondwanan Triassic, with many species exhibiting consider- able morphological variation that has been attributed to a hybridization model of speciation. This is an improbable explanation given that hybridization is very rare in gymnosperms. Allopatric speciation resulting from geographic and climatic provincialism is a more likely explanation for the morphological diversity which is well represented in Anisian Norian (Middle and Upper Triassic) floras of Australasia and elsewhere in Gondwana. Most specimens are distributed among three families: Umkomasiaceae, Peltaspermaceae and Matatiellaceae. These families, together with other possibly pteridospermous genera, are reviewed herein. Diversity in these families apparently declined by the Rhaetian and they did not persist into the Gondwanan post-Triassic. Australasian post-Triassic strata contain remarkably different floral assemblages to those of the Triassic. No fructifications are clearly pteridospermous and no remains show any obvious relationship with pteridosperms of the Gondwanan Triassic. Caytonialean fructifications are not known in Australasian strata; however, associated foliage has been reported from the Eastern Gondwanan Upper Triassic through Middle Jurassic including Australia. Much fern-like foliage, claimed to be pteridospermous from the Lower Jurassic through Eocene of Eastern Gondwana, lacks supporting evidence of such affiliation. (Author)

  14. The effect of the erg26-1 mutation on the regulation of lipid metabolism in Saccharomyces cerevisiae.

    Science.gov (United States)

    Baudry, K; Swain, E; Rahier, A; Germann, M; Batta, A; Rondet, S; Mandala, S; Henry, K; Tint, G S; Edlind, T; Kurtz, M; Nickels, J T

    2001-04-20

    A temperature-sensitive Saccharomyces cerevisiae mutant harboring a lesion in the ERG26 gene has been isolated. ERG26 encodes 4alpha-carboxysterol-C3 dehydrogenase, one of three enzymatic activities required for the conversion of 4,4-dimethylzymosterol to zymosterol. Gas chromatography/mass spectrometry analyses of sterols in this mutant, designated erg26-1, revealed the aberrant accumulation of a 4-methyl-4-carboxy zymosterol intermediate, as well as a novel 4-carboxysterol. Neutral lipid radiolabeling studies showed that erg26-1 cells also harbored defects in the rate of biosynthesis and steady-state levels of mono-, di-, and triglycerides. Phospholipid radiolabeling studies showed defects in the rate of biosynthesis of both phosphatidic acid and phosphatidylinositol. Biochemical studies revealed that microsomes isolated from erg26-1 cells contained greatly reduced 4alpha-carboxysterol-C3 dehydrogenase activity when compared with microsomes from wild type cells. Previous studies have shown that loss of function mutations in either of the fatty acid elongase genes SUR4/ELO3 or FEN1/GNS1/ELO2 can "bypass" the essentiality of certain ERG genes (Ladeveze, V., Marcireau, C., Delourme, D., and Karst, F. (1993) Lipids 28, 907-912; Silve, S., Leplatois, P., Josse, A., Dupuy, P. H., Lanau, C., Kaghad, M., Dhers, C., Picard, C., Rahier, A., Taton, M., Le Fur, G., Caput, D., Ferrara, P., and Loison, G. (1996) Mol. Cell. Biol. 16, 2719-2727). Studies presented here have shown that this sphingolipid-dependent "bypass" mechanism did not suppress the essential requirement for zymosterol biosynthesis. However, studies aimed at understanding the underlying physiology behind the temperature-sensitive growth defect of erg26-1 cells showed that the addition of several antifungal compounds to the growth media of erg26-1 cells could suppress the temperature-sensitive growth defect. Fluorescence microscopic analysis showed that GFP-Erg26p and GFP-Erg27p fusion proteins were localized

  15. Reclaimability of the spent sand mixture – sand with bentonite – sand with furfuryl resin

    Directory of Open Access Journals (Sweden)

    J. Dańko

    2011-04-01

    Full Text Available Introduction of new binding materials and new technologies of their hardening in casting moulds and cores production requires theapplication of reclamation methods adequate to their properties as well as special devices realizing tasks. The spent sands circulationsystem containing the same kind of moulding and core sands is optimal from the point of view of the expected reclamation results.However, in the face of a significant variability of applied technologies and related to them various reclamation methods, the need - of theobtained reclamation products assessment on the grounds of systematic criteria and uniform bases – arises, with a tendency of indicatingwhich criteria are the most important for the given sand system. The reclaimability results of the mixture of the spent moulding sand withGeko S bentonite and the spent core sand with the Kaltharz 404U resin hardened by acidic hardener 100 T3, are presented in the paper.Investigations were performed with regard to the estimation of an influence of core sands additions (10 –25% on the reclaimed materialquality. Dusts and clay content in the reclaim, its chemical reaction (pH and ignition loss were estimated. The verification of the reclaiminstrumental assessment was performed on the basis of the technological properties estimation of moulding sand with bentonite, where the reclaimed material was used as a matrix.

  16. Management recommendations: Sand Lake Complex

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This document is a review of land management practices at the Sand Lake National Wildlife Refuge, by a land use specialist. Recommendations, time frame and...

  17. Assessing the Contribution of the Oscillatory Potentials to the Genesis of the Photopic ERG with the Discrete Wavelet Transform

    Science.gov (United States)

    Dorfman, Allison L.; Trang, Nataly; Gauthier, Mercedes; Little, John M.; Lina, Jean-Marc

    2016-01-01

    The electroretinogram (ERG) is composed of slow (i.e., a-, b-waves) and fast (i.e., oscillatory potentials: OPs) components. OPs have been shown to be preferably affected in some diseases (such as diabetic retinopathy), while the a- and b-waves remain relatively intact. The purpose of this study was to determine the contribution of OPs to the building of the ERG and to examine whether a signal mostly composed of OPs could also exist. DWT analyses were performed on photopic ERGs (flash intensities: −2.23 to 2.64 log cd·s·m−2 in 21 steps) obtained from normal subjects (n = 40) and patients (n = 21) affected with a retinopathy. In controls, the %OP value (i.e., OPs energy/ERG energy) is stimulus- and amplitude-independent (range: 56.6–61.6%; CV = 6.3%). In contrast, the %OPs measured from the ERGs of our patients varied significantly more (range: 35.4%–89.2%; p < 0.05) depending on the pathology, some presenting with ERGs that are almost solely composed of OPs. In conclusion, patients may present with a wide range of %OP values. Findings herein also support the hypothesis that, in certain conditions, the photopic ERG can be mostly composed of high-frequency components. PMID:28101507

  18. Assessing the Contribution of the Oscillatory Potentials to the Genesis of the Photopic ERG with the Discrete Wavelet Transform

    Directory of Open Access Journals (Sweden)

    Mathieu Gauvin

    2016-01-01

    Full Text Available The electroretinogram (ERG is composed of slow (i.e., a-, b-waves and fast (i.e., oscillatory potentials: OPs components. OPs have been shown to be preferably affected in some diseases (such as diabetic retinopathy, while the a- and b-waves remain relatively intact. The purpose of this study was to determine the contribution of OPs to the building of the ERG and to examine whether a signal mostly composed of OPs could also exist. DWT analyses were performed on photopic ERGs (flash intensities: −2.23 to 2.64 log cd·s·m−2 in 21 steps obtained from normal subjects (n=40 and patients (n=21 affected with a retinopathy. In controls, the %OP value (i.e., OPs energy/ERG energy is stimulus- and amplitude-independent (range: 56.6–61.6%; CV = 6.3%. In contrast, the %OPs measured from the ERGs of our patients varied significantly more (range: 35.4%–89.2%; p<0.05 depending on the pathology, some presenting with ERGs that are almost solely composed of OPs. In conclusion, patients may present with a wide range of %OP values. Findings herein also support the hypothesis that, in certain conditions, the photopic ERG can be mostly composed of high-frequency components.

  19. hERG1 potassium channel in cancer cells: a tool to reprogram immortality.

    Science.gov (United States)

    Gentile, Saverio

    2016-10-01

    It has been well established that changes in ion fluxes across cellular membranes as a function of time is fundamental in maintaining cellular homeostasis of every living cell. Consequently, dysregulation of ion channels activity is a critical event in pathological conditions of several tissues, including cancer. Nevertheless, the role of ion channels in cancer biology is still not well understood and very little is known about the possible therapeutic opportunities offered by the use of the vast collection of drugs that target ion channels. In this review, we focus on the recent advances in understanding the role of the voltage-gated hERG1 potassium channel in cancer and on the effects of pharmacologic manipulation of the hERG1 in cancer cells aiming to provide insights into the biochemical signaling and cellular processes that are altered by using these drugs.

  20. The synergic modeling for the binding of fluoroquinolone antibiotics to the hERG potassium channel.

    Science.gov (United States)

    Ryu, Sunghi; Imai, Yumi N; Oiki, Shigetoshi

    2013-07-01

    The fluoroquinolone antibiotic binding site in the hERG potassium channel was examined for the residues involved and their position in the tetrameric channel. The blocking effect of the two fluoroquinolones levofloxacin and sparfloxacin to tandem dimers of the hERG mutants were evaluated electrophysiologically. The results indicated that two Tyr652s in the neighboring subunits and one or two Phe656s in the diagonal subunits contributed to the blockade in the case of both compounds, and Ser624 was also involved. The docking studies suggested that the protonated carboxyl group in the compounds strongly interacts with Phe656 as a π acceptor. Copyright © 2013 The Authors. Published by Elsevier Ltd.. All rights reserved.

  1. Increased adipogenesis in cultured embryonic chondrocytes and in adult bone marrow of dominant negative Erg transgenic mice.

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    Sébastien Flajollet

    Full Text Available In monolayer culture, primary articular chondrocytes have an intrinsic tendency to lose their phenotype during expansion. The molecular events underlying this chondrocyte dedifferentiation are still largely unknown. Several transcription factors are important for chondrocyte differentiation. The Ets transcription factor family may be involved in skeletal development. One family member, the Erg gene, is mainly expressed during cartilage formation. To further investigate the potential role of Erg in the maintenance of the chondrocyte phenotype, we isolated and cultured chondrocytes from the rib cartilage of embryos of transgenic mice that express a dominant negative form of Erg (DN-Erg during cartilage formation. DN-Erg expression in chondrocytes cultured for up to 20 days did not affect the early dedifferentiation usually observed in cultured chondrocytes. However, lipid droplets accumulated in DN-Erg chondrocytes, suggesting adipocyte emergence. Transcriptomic analysis using a DNA microarray, validated by quantitative RT-PCR, revealed strong differential gene expression, with a decrease in chondrogenesis-related markers and an increase in adipogenesis-related gene expression in cultured DN-Erg chondrocytes. These results indicate that Erg is involved in either maintaining the chondrogenic phenotype in vitro or in cell fate orientation. Along with the in vitro studies, we compared adipocyte presence in wild-type and transgenic mice skeletons. Histological investigations revealed an increase in the number of adipocytes in the bone marrow of adult DN-Erg mice even though no adipocytes were detected in embryonic cartilage or bone. These findings suggest that the Ets transcription factor family may contribute to the homeostatic balance in skeleton cell plasticity.

  2. Recording of both VEP and multifocal ERG for evaluation of unexplained visual loss electrophysiology in unexplained visual loss.

    Science.gov (United States)

    Renner, Agnes B; Kellner, Ulrich; Tillack, Hilmar; Kraus, Hannelore; Foerster, Michael H

    2005-11-01

    The purpose of this retrospective study was to determine the relevance of both visual-evoked potentials (VEP) and multifocal electroretinography (mfERG) to evaluate unexplained visual loss. Seventy-two consecutive patients (1996-2002) with visual disturbances of unknown origin underwent both VEP and mfERG (ISCEV standard). The mean age was 42.4 years (11.8-74.5) and median visual acuity 0.5 (no light perception - 1.0). Symptoms reported included visual acuity loss (n=69), visual field defects (n=11), disturbances of colour vision, light or dark adaptation (n=10). VEP and mfERG were normal in 43% (n=31). Both VEP and mfERG were pathological in 24% (n=17). In a further 18% (n=13) only the mfERG was pathological and in 15% (n=11) only the VEP was pathological. Macular dysfunction as detected with mfERG was present in 73% of 41 patients with at least one pathological test. Neuroimaging (MRI, CCT) and/or neurological examination was performed in 27/72 patients (38%), to account for unexplained visual loss, prior to the electrophysiological tests; these were normal in all patients. Electrophysiological tests revealed disturbances of the post-retinal visual pathway in only 3/27 patients. In 12/27 patients, mfERG revealed a macular disorder; in a further 12/27 patients VEP and mfERG were normal. The combined evaluation of VEP and mfERG is useful both to establish the area of dysfunction and the normality of the visual system. Electrophysiological testing prior to neuroimaging is recommended for patients where clear clinical signs of cerebral disorders are not evident. This reduces the frequency of unnecessary neuroimaging and associated radiation exposure.

  3. NY-ESO-1 expression is tightly linked to TMPRSS2-ERG fusion in prostate cancer.

    Science.gov (United States)

    Grupp, Katharina; Ospina-Klinck, Daniel; Tsourlakis, Maria Christina; Koop, Christina; Wilczak, Waldemar; Adam, Meike; Simon, Ronald; Sauter, Guido; Izbicki, Jakob Robert; Graefen, Markus; Huland, Hartwig; Steurer, Stefan; Schlomm, Thorsten; Minner, Sarah; Quaas, Alexander

    2014-07-01

    NY-ESO-1 has been suggested as therapeutic cancer vaccine in prostate cancer. This study was undertaken to explore the relationship of NY-ESO-1 with tumor phenotype, biochemical recurrence, and molecular subgroups in hormone-naive prostate cancers. NY-ESO-1 immunohistochemistry was analyzed on a tissue microarray containing 11,152 prostate cancer samples. Results were compared to clinically follow-up data, ERG status, and deletions on PTEN, 3p13, 5q21, and 6q15. NY-ESO-1 expression was absent in benign prostate glands. In prostate cancer, NY-ESO-1 positivity was found 8.8% of our 8,761 interpretable tumors including 5.8% with weak, 2.5% with moderate, and 0.5% with strong expression. There was a threefold higher rate of NY-ESO-1 expression in ERG fusion positive tumors than in ERG negative cancers (P ESO-1 expression was associated with early biochemical recurrence (P = 0.0002) and high Gleason grade (P ESO-1 expression was also linked to PTEN (P = 0.0012) and 6q15 deletions (P = 0.0005). Our observations indicate a tight link of NY-ESO-1 expression to ERG activation and (to a lesser extent) PTEN- and 6q15-deletions in prostate cancer. The impact of these interactions on the likelihood of response to immunotherapy is unclear. The prognostic impact of NY-ESO-1 expression is little and not independent of histologic variables. © 2014 Wiley Periodicals, Inc.

  4. The Role of ERG and CXCR4 in Prostate Cancer Progression

    Science.gov (United States)

    2012-06-01

    Ambroisine, L., Fisher, G., Kovacs, G., Flohr, P., Berney, D., Foster, C. S., Fletcher, A., Gerald, W. L., Moller, H., Reuter, V., De Bono , J. S., Scardino...Clark, J., Attard, G., Jhavar, S., Flohr, P., Reid, A., De- Bono , J., Eeles, R., Scardino, P., Cuzick, J., Fisher, G., Parker, M. D., Foster, C. S...17. Clark J, Merson S, Jhavar S, Flohr P, Edwards SM, et al (2007) Diversity of TMPRSS2-ERG fusion transcripts in the human prostate. Oncogene 26

  5. A k-nearest neighbor classification of hERG K(+) channel blockers.

    Science.gov (United States)

    Chavan, Swapnil; Abdelaziz, Ahmed; Wiklander, Jesper G; Nicholls, Ian A

    2016-03-01

    A series of 172 molecular structures that block the hERG K(+) channel were used to develop a classification model where, initially, eight types of PaDEL fingerprints were used for k-nearest neighbor model development. A consensus model constructed using Extended-CDK, PubChem and Substructure count fingerprint-based models was found to be a robust predictor of hERG activity. This consensus model demonstrated sensitivity and specificity values of 0.78 and 0.61 for the internal dataset compounds and 0.63 and 0.54 for the external (PubChem) dataset compounds, respectively. This model has identified the highest number of true positives (i.e. 140) from the PubChem dataset so far, as compared to other published models, and can potentially serve as a basis for the prediction of hERG active compounds. Validating this model against FDA-withdrawn substances indicated that it may even be useful for differentiating between mechanisms underlying QT prolongation.

  6. JURASSIC PALEONTOLOGICAL HERITAGE OF MURCIA (BETIC CORDILLERA, SOUTH-EASTERN SPAIN

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    GREGORIO ROMERO

    2004-03-01

    Full Text Available Jurassic rocks of the External and Internal Zones of the Betic Cordillera are widespread in the province of Murcia. Four areas are considered of special interest for stratigraphical and paleontological analysis: a Sierra Quípar and b Sierras Lúgar-Corque (External Subbetic, c Sierra Ricote (Median Subbetic and d Sierra Espuña (Malaguide Complex. The first two contain Jurassic sections including Sinemurian-Tithonian deposits, and major stratigraphic discontinuities, containing significant cephalopod concentrations of taphonomic and taxonomic interest, occuring in the Lower-Upper Pliensbachian, Lower/Middle Jurassic and Middle/Upper Jurassic boundaries. These areas are also relevant for biostratigraphical analysis of the Middle-Upper Jurassic interval. In the Sierra de Ricote, the Mahoma section is of especial interest for the study of Lías/Dogger transition. Casa Chimeneas section constitutes the best Subbetic site for the analysis of the Lower/Upper Bajocian boundary. In the La Bermeja-Casas de Vite area, the Bajocian-Tithonian interval is well-represented, including a parastratotype of the Radiolarite Jarropa Formation. Finally, the Malvariche section in Sierra Espuña represents the best Jurassic succession of Internal Zones of the Betic Cordillera and could be considered as a reference section for this Betic Domain. In this paper a heritage evaluation has been carried out for these classical jurassic sections with the object of protecting these sites according to the legal framework prevailing in the province of Murcia.

  7. The geographic and phylogenetic position of sauropod dinosaurs from the Kota formation (Early Jurassic) of India

    Science.gov (United States)

    Gillette, David D.

    2003-03-01

    The earliest sauropods are the Late Triassic Isanosaurus from Thailand, the Early Jurassic Barapasaurus and Kotasaurus from the Kota Formation of the Pranhita-Godavari Basin of India and Vulcanodon from Zimbabwe, and a variety of Middle Jurassic genera from many localities in Gondwana and Laurasia except North America. These early sauropod genera are related, but their phylogenetic positions remain unresolved. Sauropods originated in Laurasia (Thailand and vicinity) or Pangea (broadly, Thailand, China, India), with at least three additional steps involving expansion and diversification through the Middle Jurassic.

  8. POROSPHAERA (PORIFERA, A GLOBULAR SPONGE FROM THE UPPER JURASSIC OF THE CENTRAL IRAN

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    BABA SENOWBARI-DARYAN

    2011-11-01

    Full Text Available Porosphaera, an abundant small spherical calcisponge, well known from Cretaceous strata of Europe, was found in Middle and Upper Jurassic deposits of east-central Iran. This is the first record of Porosphaera from the Jurassic, except for a questionable occurrence of the genus from the Upper Jurassic of Canada, described by Jansa et al. (1982. The following species are new: P. regularis n. sp., P. biporata n. sp., P.? labyrinthica n. sp.,  and P.? asymmetrica n. sp. 

  9. Early Jurassic Flora and Stratigraphy from Shansonggang of Southern Jilin,China

    Institute of Scientific and Technical Information of China (English)

    Fengxiang Liu; Yuewu Sun; Chunlin Sun; Jiansheng Lu; Yanhua Zhao

    2003-01-01

    More than 35 species belonging to 22 genera of fossil plants are recognized by the authors from the Shansonggang flora in the 8hansonggang Basin of Jilin, China. Among them, the coexistence of Coniopteris and Cycadocarpidium demonstrates that the present flora possesses the characters of the early assemblage of Early Jurassic floras in Eurasia. Therefore, the age of the Shansonggang flora is considered the Early Jurassic.This study would be beneficial for better understanding the paleoecological and paleoclimatic characteristics of the Shansonggang Basin. Based mainly on the characters of the flora, the authors suggest that the Lower Jurassic coal-bearing strata, the Shansongang Formation, should namely be renewed.

  10. Molecular composition and ultrastructure of Jurassic paravian feathers.

    Science.gov (United States)

    Lindgren, Johan; Sjövall, Peter; Carney, Ryan M; Cincotta, Aude; Uvdal, Per; Hutcheson, Steven W; Gustafsson, Ola; Lefèvre, Ulysse; Escuillié, François; Heimdal, Jimmy; Engdahl, Anders; Gren, Johan A; Kear, Benjamin P; Wakamatsu, Kazumasa; Yans, Johan; Godefroit, Pascal

    2015-08-27

    Feathers are amongst the most complex epidermal structures known, and they have a well-documented evolutionary trajectory across non-avian dinosaurs and basal birds. Moreover, melanosome-like microbodies preserved in association with fossil plumage have been used to reconstruct original colour, behaviour and physiology. However, these putative ancient melanosomes might alternatively represent microorganismal residues, a conflicting interpretation compounded by a lack of unambiguous chemical data. We therefore used sensitive molecular imaging, supported by multiple independent analytical tests, to demonstrate that the filamentous epidermal appendages in a new specimen of the Jurassic paravian Anchiornis comprise remnant eumelanosomes and fibril-like microstructures, preserved as endogenous eumelanin and authigenic calcium phosphate. These results provide novel insights into the early evolution of feathers at the sub-cellular level, and unequivocally determine that melanosomes can be preserved in fossil feathers.

  11. Paleomagnetic studies on sedimentary Jurassic rocks from southern Bulgaria

    Science.gov (United States)

    Kruczyk, J.; Kaḑziałko-Hofmokl, M.; Nozharov, P.; Petkov, N.; Nachev, I.

    Paleomagnetic investigations were performed on Jurassic sediments sampled in the mobile area of Bulgaria comprising Srednogorie, Kreiste and Stranja. The main carriers of magnetic properties of rocks studied are pigmentary haematite and goethite of post-sedimentary origin. The characteristic component of natural remanence (CARM), isolated by means of analysis of demagnetization procedure is secondary, and was acquired after the main tectonic event that took place in this area during the Upper Cretaceous. The CARM directions before tectonic correction are close to the results for Upper Cretaceous magmatic rocks from Srednogorie. The mean CARM direction and the corresponding polar position obtained for the whole region studied are compared with reference data for the Eurasian Platform. The difference between the reference and our data implies anticlockwise rotation of southern Bulgaria relative to Eurasia by ˜ 10-20° and a northward tilt of the region under study by ˜ 10-15° after acquisition of CARM.

  12. Three new Jurassic euharamiyidan species reinforce early divergence of mammals.

    Science.gov (United States)

    Bi, Shundong; Wang, Yuanqing; Guan, Jian; Sheng, Xia; Meng, Jin

    2014-10-30

    The phylogeny of Allotheria, including Multituberculata and Haramiyida, remains unsolved and has generated contentious views on the origin and earliest evolution of mammals. Here we report three new species of a new clade, Euharamiyida, based on six well-preserved fossils from the Jurassic period of China. These fossils reveal many craniodental and postcranial features of euharamiyidans and clarify several ambiguous structures that are currently the topic of debate. Our phylogenetic analyses recognize Euharamiyida as the sister group of Multituberculata, and place Allotheria within the Mammalia. The phylogeny suggests that allotherian mammals evolved from a Late Triassic (approximately 208 million years ago) Haramiyavia-like ancestor and diversified into euharamiyidans and multituberculates with a cosmopolitan distribution, implying homologous acquisition of many craniodental and postcranial features in the two groups. Our findings also favour a Late Triassic origin of mammals in Laurasia and two independent detachment events of the middle ear bones during mammalian evolution.

  13. An Undercover Angiosperm from the Jurassic of China

    Institute of Scientific and Technical Information of China (English)

    ZHENG Shaolin; WANG Xin

    2010-01-01

    Searching for early angiosperms is a riveting activity in botany because it helps to resolve the phylogenetic relationships among seed plants and among angiosperms themselves.One of the challenges for this job is what the target fossils look like.Most possibly early angiosperms may elude our scrutiny with gymnospermous appearances.This possibility becomes a reality in a Jurassic plant,Solaranthus gen.nov,which bears a peltaspermalean appearance and enclosed ovules.According to knowledge available hitherto,the latter feature makes it an angiosperm.However,such a feature is more likely to be eclipsed by its gymnospermous appearance.The early age and unexpected character assemblage of Solaranthus urge for a fresh look on the assumed-simple relationship between angiosperms and gymnosperms.Its resemblance to the order Peltaspermales favors the Mostly Male Theory.

  14. Geomagnetic field intensity in the middle jurassic - oligocene

    CERN Document Server

    Kurazhkovskii, A Yu; Klain, B I

    2014-01-01

    The present paper summarizes results of the studies on the intensity of geomagnetic field in the (167 - 23) Ma interval by sedimentary rocks of the Russian Plate and adjacent territories. The joint analysis of the data paleointensity obtained by sedimentary and thermomagnetized (from PINT12) rocks within this temporal interval is conducted. It is shown that the changes of the paleointensity were occurred chaotically. Alternating bursts and periods of quiet regime of the geomagnetic field are typical for intermittent processes and is a characteristic of the geological interval Jurassic-beginning of Paleogene. The distributions of the paleointensity corresponding to different intervals of geologic time were investigated. It is revealed that the cumulative distribution function (CDF) of the paleointensity values is best approximated by a power function. The indices of the power functions varied depending on geologic time intervals.The analysis of the paleomagnetic data suggests that the medium in which the geoma...

  15. Extreme adaptations for aquatic ectoparasitism in a Jurassic fly larva.

    Science.gov (United States)

    Chen, Jun; Wang, Bo; Engel, Michael S; Wappler, Torsten; Jarzembowski, Edmund A; Zhang, Haichun; Wang, Xiaoli; Zheng, Xiaoting; Rust, Jes

    2014-06-24

    The reconstruction of ancient insect ectoparasitism is challenging, mostly because of the extreme scarcity of fossils with obvious ectoparasitic features such as sucking-piercing mouthparts and specialized attachment organs. Here we describe a bizarre fly larva (Diptera), Qiyia jurassica gen. et sp. nov., from the Jurassic of China, that represents a stem group of the tabanomorph family Athericidae. Q. jurassica exhibits adaptations to an aquatic habitat. More importantly, it preserves an unusual combination of features including a thoracic sucker with six radial ridges, unique in insects, piercing-sucking mouthparts for fluid feeding, and crocheted ventral prolegs with upward directed bristles for anchoring and movement while submerged. We demonstrate that Q. jurassica was an aquatic ectoparasitic insect, probably feeding on the blood of salamanders. The finding reveals an extreme morphological specialization of fly larvae, and broadens our understanding of the diversity of ectoparasitism in Mesozoic insects.DOI: http://dx.doi.org/10.7554/eLife.02844.001.

  16. Origin of intraformational folds in the Jurassic Todilto Limestone, Ambrosia Lake uranium mining district, McKinley and Valencia counties, New Mexico

    Science.gov (United States)

    Green, M.W.

    1982-01-01

    The Todilto Limestone of Middle Jurassic age in the Ambrosia Lake uranium mining district of McKinley and Valencia Counties, New Mexico, is the host formation for numerous small- to medium-sized uranium deposits in joints, shear zones, and fractures within small- to large-scale intraformational folds. The folds probably were formed as a result of differential sediment loading when eolian sand dunes of the overlying Summerville Formation of Middle Jurassic age migrated over soft, chemically precipitated, lime muds of the Todilto shortly after their deposition in a regressive, mixed fresh and saline lacustrine or marine environment of deposition. Encroachment of Summerville eolian dunes over soft Todilto lime muds was apparently a local phenomenon and was restricted to postulated beltlike zones which trended radially across the Todilto coastline toward the receding body of water. Intraformational folding is believed to be confined to the pathways of individual eolian dunes or clusters of dunes within the dune belts. During the process of sediment loading by migrating sand dunes, layers of Todilto lime mud were differentially compacted, contorted, and dewatered, producing both small- and large-scale plastic deformation structures, including convolute laminations, mounds, rolls, folds, and small anticlines and synclines. With continued compaction and dewatering, the mud, in localized areas, reached a point of desaturation at which sediment plasticity was lost. Prolonged loading by overlying dune sands thus caused faulting, shearing, fracturing, and jointing of contorted limestone beds. These areas or zones of deformation within the limestone became the preferred sites of epigenetic uranium mineralization because of the induced transmissivity created by sediment rupture. Along most of the prograding Todilto coastline, adjacent to the eolian dune belts, both interdune and coastal sabkha environments dominated during Todilto-Summerville time. Sediments in coastal areas

  17. Triassic-Jurassic Mass Extinction: Evidence for Bolide Impact?

    Science.gov (United States)

    Perry, R.; Becker, L.; Haggart, J.; Poreda, R.

    2003-04-01

    The Triassic-Jurassic (TJ) mass extinction event is one of the most severe in geologic history and is one of the five largest in the Phanerozoic with as many as 80% of the species lost. It is also one of the most poorly understood. Only a few geologic sections have been identified for the TJ extinction and most of those are not well preserved. Previously, the paucity of suitable stratigraphic sections has prevented corroborative geochemical studies. Recently a well-preserved stratigraphic section spanning the Triassic-Jurassic boundary (˜200 mya) was identified at Kennecott Point, Queen Charlotte, Islands, British Columbia. Initial studies have shown that the Kennecott Point sequence is one of the best preserved and contains one of the most complete radiolarian microfossil turnovers known. Analyses of stable isotopes have shown that a 13C perturbation exits within the sequence and suggests a decline in organic productivity (Ward et al., 2001). Preliminary results of laser desorption mass spectrometry (LDMS) of selected Queen Charlotte samples suggest that fullerenes (C60 to C200) may be present in the Kennecott Point stratigraphic sequence. Previous studies have shown that fullerenes are present in the mass extinction boundary of the Permian-Triassic (˜251 mya) as well as the well-known "dinosaur" extinction event of the Cretaceous-Tertiary (˜65 mya). Therefore, three of the big five extinction events appear to have associated fullerenes. The possible presence of fullerenes along with the productivity collapse (rapid environmental change) suggests that a cometary or asteroidal impact may have occurred. Although no known impact crater exists, we hope to present chemical evidence that an impact or multiple impacts may have been responsible for the TJ mass extinction.

  18. Porphyrin geochemistry of Atlantic Jurassic-Cretaceous black shales

    Energy Technology Data Exchange (ETDEWEB)

    Baker, E.W.; Louda, J.W.

    1986-01-01

    Late Jurassic-early Cretaceous black shales and an overlying sequence of Albian-Campanian zeolitic claystones from the Falkland Plateau (DSDP/IPOD Leg 71, Site 511) were analyzed for tetrapyrrole pigment type and abundance. The black shale sequence was found to be rich in DPEP-series dominated free-base, nickel (Ni) and, to a lesser extent, vanadyl (V = 0) porphyrins. A low level of organic maturity (i.e. precatagenesis) is indicated for these strata as nickel chelation by free-base porphyrins is only 50-75% complete, proceeding down-hole to 627 meters sub-bottom. Electronic and mass spectral data reveal that the proposed benzo-DPEP (BD) and tetrahydrobenzo-DPEP (THBD) series are present in the free-base and Ni species, as well as the more usual occurrence in V = 0 porphyrin arrays. Highly reducing conditions are suggested by an abundance of the PAH perylene, substantial amounts of the THBD/BD series and a redox equilibrium between free-base DPEP and 7,8-dihydro-DPEP series, which exist in a 7:1 molar ratio. The Albian-Campanian claystone strata were found to be tetrapyrrole poor, and those pigments present were typed as Cu/Ni highly dealkylated (C/sub 26/ max.) etioporphyrins, thought to be derived via redeposition and oxidation of terrestrial organic matter (OM). Results from the present study are correlated to their past analyses of Jurassic-Cretaceous sediments from Atlantic margins in an effort to relate tetrapyrrole quality and quantity to basin evolution and OM sources in the proto-Atlantic.

  19. Remagnetization and Clay diagenesis in Jurassic Sediments of Skye, Scotland

    Science.gov (United States)

    Basu, A.; Elliott, W.; Wampler, J.; Elmore, R.; Engel, M. H.

    2003-12-01

    The thrust of this study is to test the hypothesized connection between magnetite authigenesis and diagenetic reactions forming illite, an idea based on the results of paleomagnetic, rock magnetic, geochemical, and petrographic/SEM studies on Jurassic sedimentary rocks of Skye, Scotland. The Jurassic rocks in southern Skye contain a dual polarity magnetization residing in magnetite that is interpreted as a chemical remanent magnetization (CRM) and has directions similar to those of early Tertiary igneous rocks on Skye. The presence-absence test and the timing of acquisition for this CRM suggest that magnetite authigenesis is related to the smectite-to-illite conversion, and that clay diagenesis is a viable remagnetization mechanism. The clay fractions consist of illite-smectite (I-S), kaolinite, and trace amounts of chlorite. The I-S exhibits Kalkberg order (IISI) and typically contains ˜ 85% to 90% illite layers based on the positions of the 001 reflection. The 2M1, 1M and 1Md illite polytypes are present in variable proportions depending on size fraction. The K-Ar dates of I-S in the finest fraction range from 100 to 131 Ma while the K-Ar dates of I-S of the coarse fractions range from 160-210 Ma. In all cases, the dates of the finest I-S are much greater than the Tertiary CRM ages recorded in these rocks (65 Ma). The K-Ar dates decrease with decrease in particle size. At first approximation, the decrease is thought to reflect smaller amounts of detrital illite in the finer fractions. The youngest K-Ar dates of I-S are significantly greater than the CRM age recorded in these sediments. The most likely explanation of the discordance between K-Ar dates and CRM is that the finest fractions contain small amounts of detrital illite.

  20. Early diagenetic pyrite morphology in a mudstone-dominated succession: the Lower Jurassic Cleveland Ironstone Formation, eastern England

    Science.gov (United States)

    Taylor, K. G.; Macquaker, J. H. S.

    2000-03-01

    Diagenetic pyrite in the mudstones and ironstones of the Lower Jurassic Cleveland Ironstone Formation of eastern England exhibits two distinct morphologies: framboidal pyrite, commonly associated with organic matter, and euhedral pyrite, associated with detrital clay pellets. These two morphologies are mutually exclusive in occurrence. Framboidal pyrite is present in clay-rich mudstones, ooidal ironstones, apatite-rich units and some silt-rich mudstones. Euhedral pyrite is present in silt-rich and sand-rich mudstones. δ34S isotopic analysis of six samples of pyrite suggests that both types of pyrite morphology precipitated during early diagenesis from porewaters with open access to overlying sea-water, although both probably acted as sites for continued pyrite precipitation during burial. It is proposed that framboidal pyrite precipitated from iron-dominated porewaters at sites of sulfide supply (i.e. in the region of organic matter as a result of bacterial sulfate reduction) where, locally, sulfide production rates were high enough for porewaters to reach supersaturation with respect to FeS. Euhedral pyrite also precipitated from iron-dominated porewaters, but sulfide production rates from organic matter was such that FeS saturation was not reached at the sites of sulfide production. Instead, euhedral pyrite was precipitated directly from porewater when FeS2 saturation was reached. The control over pyrite morphology was probably the amount and reactivity of the organic matter within the deposited sediments. The sand-rich mudstones contained less reactive organic matter due to clastic dilution and deposition in shallower environments with O2-rich bottom waters. The ironstones and apatite-rich units were deposited under very low sedimentation rates, and as a result organic matter contents were very low and iron reduction dominated early diagenesis, which inhibited sulfate-reduction. The presence of minor framboidal pyrite within these units, however, suggests that

  1. Disturbance of the inclined inserting-type sand fence to wind-sand flow fields and its sand control characteristics

    Science.gov (United States)

    Cheng, Jian-jun; Lei, Jia-qiang; Li, Sheng-yu; Wang, Hai-feng

    2016-06-01

    The inclined inserting-type sand fence is a novel sand retaining wall adopted along the Lanxin High-Speed Railway II in Xinjiang for controlling and blocking sand movement. To verify the effectiveness of the new fence structure for sand prevention, a wind tunnel test was used for flow field test simulation of the sand fence. The results indicate that the inclined inserting-type sand fence was able to deflect the flow of the sand and was able to easily form an upward slant acceleration zone on the leeward side of the sand fence. As shown by the percentage change in sand collection rates on the windward side and the leeward side of the sand fence, the sand flux per unit area at 4 m height in the slant upward direction increased on the leeward side of the inclined inserting-type sand fence. By comparing the flow fields, this site is an acceleration zone, which also reaffirms the correspondence of wind-sand flow fields with the spatial distribution characteristic of the wind-carried sand motion. The field sand collection data indicates that under the effects of the inclined inserting-type sand fence, the sandy air currents passing in front and behind the sand fence not only changed in quality, but the grain composition and particle size also significantly changed, suggesting that the inclined inserting-type sand fence has a sorting and filtering effect on the sandy air currents that passed through. The fence retained coarse particulates on the windward side and fine particulates within the shade of the wind on the leeward side.

  2. Optimal array of sand fences.

    Science.gov (United States)

    Lima, Izael A; Araújo, Ascânio D; Parteli, Eric J R; Andrade, José S; Herrmann, Hans J

    2017-03-24

    Sand fences are widely applied to prevent soil erosion by wind in areas affected by desertification. Sand fences also provide a way to reduce the emission rate of dust particles, which is triggered mainly by the impacts of wind-blown sand grains onto the soil and affects the Earth's climate. Many different types of fence have been designed and their effects on the sediment transport dynamics studied since many years. However, the search for the optimal array of fences has remained largely an empirical task. In order to achieve maximal soil protection using the minimal amount of fence material, a quantitative understanding of the flow profile over the relief encompassing the area to be protected including all employed fences is required. Here we use Computational Fluid Dynamics to calculate the average turbulent airflow through an array of fences as a function of the porosity, spacing and height of the fences. Specifically, we investigate the factors controlling the fraction of soil area over which the basal average wind shear velocity drops below the threshold for sand transport when the fences are applied. We introduce a cost function, given by the amount of material necessary to construct the fences. We find that, for typical sand-moving wind velocities, the optimal fence height (which minimizes this cost function) is around 50 cm, while using fences of height around 1.25 m leads to maximal cost.

  3. Micro-RNA-204 Participates in TMPRSS2/ERG Regulation and Androgen Receptor Reprogramming in Prostate Cancer.

    Science.gov (United States)

    Todorova, Krassimira; Metodiev, Metodi V; Metodieva, Gergana; Mincheff, Milcho; Fernández, Nelson; Hayrabedyan, Soren

    2017-02-01

    Cancer progression is driven by genome instability incurred rearrangements such as transmembrane protease, serine 2 (TMPRSS2)/v-ets erythroblastosis virus E26 oncogene (ERG) that could possibly turn some of the tumor suppressor micro-RNAs into pro-oncogenic ones. Previously, we found dualistic miR-204 effects, acting either as a tumor suppressor or as an oncomiR in ERG fusion-dependent manner. Here, we provided further evidence for an important role of miR-204 for TMPRSS2/ERG and androgen receptor (AR) signaling modulation and fine tuning that prevents TMPRSS2/ERG overexpression in prostate cancer. Based on proximity-based ligation assay, we designed a novel method for detection of TMPRSS2/ERG protein products. We found that miR-204 is TMPRSS2/ERG oncofusion negative regulator, and this was mediated by DNA methylation of TMPRSS2 promoter. Transcriptional factors runt-related transcription factor 2 (RUNX2) and ETS proto-oncogene 1 (ETS1) were positive regulators of TMPRSS2/ERG expression and promoter hypo-methylation. Clustering of patients' sera for fusion protein, transcript expression, and wild-type ERG transcript isoforms, demonstrated not all patients harboring fusion transcripts had fusion protein products, and only few fusion positive ones exhibited increased wild-type ERG transcripts. miR-204 upregulated AR through direct promoter hypo-methylation, potentiated by the presence of ERG fusion and RUNX2 and ETS1. Proteomics studies provided evidence that miR-204 has dualistic role in AR cancer-related reprogramming, promoting prostate cancer-related androgen-responsive genes and AR target genes, as well as AR co-regulatory molecules. miR-204 methylation regulation was supported by changes in molecules responsible for chromatin remodeling, DNA methylation, and its regulation. In summary, miR-204 is a mild regulator of the AR function during the phase of preserved AR sensitivity as the latter one is required for ERG-fusion translocation.

  4. Analysis of ERG11 gene mutations in fluconazole-resistant Candida glabrata strains%耐氟康唑光滑念珠菌ERG11基因突变分析

    Institute of Scientific and Technical Information of China (English)

    沈银忠; 卢洪洲; 张永信

    2010-01-01

    Objective To study the mutations of ERG11 gene which encodes P450 lanosterol 14-α demethylase, and to explore the possible role of ERG11 gene in inducing fluconazole resistance in Candida glabrata. Methods ERG11 genes of 9 fluconazole-resistant Candida glabrata isolates and 10 fluconazole-sensitive Candida glabrata isolates were cloned into pUC57-T vector. The open reading frame of ERG11 gene were sequenced by two directional sequencing using universal primers. All sequences were compared with the published sequence. Results Ten kinds of synonymous point mutation were found. Neither missense mutation nor frame-shifting mutation was found. Among the 10 kinds of synonymous point mutation, 5 were found in both fluconazole-resistant and fluconazolesensitive Candida glabrata isolates, and 3 were only found in fluconazole-resistant isolates, 2 were only found in fluconazole-sensitive ones. The majority of the point mutations were located between 1320-2200 base pair of ERG11 gene. Conclusions There are ERG11 gene polymorphisms in clinical strains of Candida glabrata. ERG11 gene mutations are not found to be involved in the development of fluconazole resistance in Candida glabrata.%目的 分析耐药氟康唑光滑念珠菌ERG11基因突变情况,探讨ERG11基因突变在光滑念珠菌耐药性形成中的作用.方法 分别将氟康唑耐药光滑念珠菌株9株和敏感株10株的ERG11基因克隆至pUC57-T载体,利用载体上的通用引物对其ERG11基因整个开放读码框进行双向测序,将测序结果与网上公布的标准序列进行比对.结果 19株光滑念珠菌耐药株和敏感株ERG11基因共存在10个点突变,均为同义突变,无错义突变和移码突变.其中5个点突变在耐药株和敏感株中均出现,3个只出现在耐药株,2个只出现在敏感株.点突变主要位于ERG11基因1320~2200 bp,出现频率最高的3个点突变为T2117A、A1583G、T1328C.结论 光滑念珠菌ERG11基因序列存在多态性,未发现因ERG

  5. Sterols of Saccharomyces cerevisiae erg6 Knockout Mutant Expressing the Pneumocystis carinii S-Adenosylmethionine:Sterol C-24 Methyltransferase.

    Science.gov (United States)

    Kaneshiro, Edna S; Johnston, Laura Q; Nkinin, Stephenson W; Romero, Becky I; Giner, José-Luis

    2015-01-01

    The AIDS-associated lung pathogen Pneumocystis is classified as a fungus although Pneumocystis has several distinct features such as the absence of ergosterol, the major sterol of most fungi. The Pneumocystis carinii S-adenosylmethionine:sterol C24-methyltransferase (SAM:SMT) enzyme, coded by the erg6 gene, transfers either one or two methyl groups to the C-24 position of the sterol side chain producing both C28 and C29 24-alkylsterols in approximately the same proportions, whereas most fungal SAM:SMT transfer only one methyl group to the side chain. The sterol compositions of wild-type Sacchromyces cerevisiae, the erg6 knockout mutant (Δerg6), and Δerg6 expressing the P. carinii or the S. cerevisiae erg6 gene were analyzed by a variety of chromatographic and spectroscopic procedures to examine functional complementation in the yeast expression system. Detailed sterol analyses were obtained using high performance liquid chromatography and proton nuclear magnetic resonance spectroscopy ((1)H-NMR). The P. carinii SAM:SMT in the Δerg6 restored its ability to produce the C28 sterol ergosterol as the major sterol, and also resulted in low levels of C29 sterols. This indicates that while the P. carinii SAM:SMT in the yeast Δerg6 cells was able to transfer a second methyl group to the side chain, the action of Δ(24(28)) -sterol reductase (coded by the erg4 gene) in the yeast cells prevented the formation and accumulation of as many C29 sterols as that found in P. carinii.

  6. Loss of SOX9 Expression Is Associated with PSA Recurrence in ERG-Positive and PTEN Deleted Prostate Cancers.

    Directory of Open Access Journals (Sweden)

    Christoph Burdelski

    Full Text Available The transcription factor SOX9 plays a crucial role in normal prostate development and has been suggested to drive prostate carcinogenesis in concert with PTEN inactivation. To evaluate the clinical impact of SOX9 and its relationship with key genomic alterations in prostate cancer, SOX9 expression was analyzed by immunohistochemistry on a tissue microarray containing 11,152 prostate cancers. Data on ERG status and deletions of PTEN, 3p13, 5q21 and 6q15 were available from earlier studies. SOX9 expression levels were comparable in luminal cells of normal prostate glands (50% SOX9 positive and 3,671 cancers lacking TMPRSS2:ERG fusion (55% SOX9 positive, but was markedly increased in 3,116 ERG-fusion positive cancers (81% SOX9 positive, p<0.0001. While no unequivocal changes in the SOX9 expression levels were found in different stages of ERG-negative cancers, a gradual decrease of SOX9 paralleled progression to advanced stage, high Gleason grade, metastatic growth, and presence of PTEN deletions in ERG-positive cancers (p<0.0001 each. SOX9 levels were unrelated to deletions of 3p, 5q, and 6q. Down-regulation of SOX9 expression was particularly strongly associated with PSA recurrence in ERG-positive tumors harboring PTEN deletions (p=0.001, but had no significant effect in ERG-negative cancers or in tumors with normal PTEN copy numbers. In summary, the results of our study argue against a tumor-promoting role of SOX9 in prostate cancer, but demonstrate that loss of SOX9 expression characterizes a particularly aggressive subset of ERG positive cancers harboring PTEN deletions.

  7. Structure and Function of the Splice Variants of TMPRSS2-ERG, a Prevalent Genomic Alteration in Prostate Cancer

    Science.gov (United States)

    2012-09-01

    USA) for 30 min followed by treatment with the ABC Kit (Vector Laboratories) for 30 min. The color detection was achieved by treatment with VIP...parenchymal cells which later differentiate into Kupffer cells and hepatic stellate cells. It is not clear at this stage which type of cells in...addition to endothelial cells express Erg protein. Similar to E14.5d liver megakaryocytes, ERG MAb did not show reac- tivity with E17.5d hepatic

  8. Effects of Tannic Acid, Green Tea and Red Wine on hERG Channels Expressed in HEK293 Cells.

    Directory of Open Access Journals (Sweden)

    Xi Chu

    Full Text Available Tannic acid presents in varying concentrations in plant foods, and in relatively high concentrations in green teas and red wines. Human ether-à-go-go-related gene (hERG channels expressed in multiple tissues (e.g. heart, neurons, smooth muscle and cancer cells, and play important roles in modulating cardiac action potential repolarization and tumor cell biology. The present study investigated the effects of tannic acid, green teas and red wines on hERG currents. The effects of tannic acid, teas and red wines on hERG currents stably transfected in HEK293 cells were studied with a perforated patch clamp technique. In this study, we demonstrated that tannic acid inhibited hERG currents with an IC50 of 3.4 μM and ~100% inhibition at higher concentrations, and significantly shifted the voltage dependent activation to more positive potentials (Δ23.2 mV. Remarkably, a 100-fold dilution of multiple types of tea (green tea, oolong tea and black tea or red wine inhibited hERG currents by ~90%, and significantly shifted the voltage dependent activation to more positive potentials (Δ30.8 mV and Δ26.0 mV, respectively. Green tea Lung Ching and red wine inhibited hERG currents, with IC50 of 0.04% and 0.19%, respectively. The effects of tannic acid, teas and red wine on hERG currents were irreversible. These results suggest tannic acid is a novel hERG channel blocker and consequently provide a new mechanistic evidence for understanding the effects of tannic acid. They also revealed the potential pharmacological basis of tea- and red wine-induced biology activities.

  9. Effects of Tannic Acid, Green Tea and Red Wine on hERG Channels Expressed in HEK293 Cells.

    Science.gov (United States)

    Chu, Xi; Guo, Yusong; Xu, Bingyuan; Li, Wenya; Lin, Yue; Sun, Xiaorun; Ding, Chunhua; Zhang, Xuan

    2015-01-01

    Tannic acid presents in varying concentrations in plant foods, and in relatively high concentrations in green teas and red wines. Human ether-à-go-go-related gene (hERG) channels expressed in multiple tissues (e.g. heart, neurons, smooth muscle and cancer cells), and play important roles in modulating cardiac action potential repolarization and tumor cell biology. The present study investigated the effects of tannic acid, green teas and red wines on hERG currents. The effects of tannic acid, teas and red wines on hERG currents stably transfected in HEK293 cells were studied with a perforated patch clamp technique. In this study, we demonstrated that tannic acid inhibited hERG currents with an IC50 of 3.4 μM and ~100% inhibition at higher concentrations, and significantly shifted the voltage dependent activation to more positive potentials (Δ23.2 mV). Remarkably, a 100-fold dilution of multiple types of tea (green tea, oolong tea and black tea) or red wine inhibited hERG currents by ~90%, and significantly shifted the voltage dependent activation to more positive potentials (Δ30.8 mV and Δ26.0 mV, respectively). Green tea Lung Ching and red wine inhibited hERG currents, with IC50 of 0.04% and 0.19%, respectively. The effects of tannic acid, teas and red wine on hERG currents were irreversible. These results suggest tannic acid is a novel hERG channel blocker and consequently provide a new mechanistic evidence for understanding the effects of tannic acid. They also revealed the potential pharmacological basis of tea- and red wine-induced biology activities.

  10. ADMET Evaluation in Drug Discovery. 16. Predicting hERG Blockers by Combining Multiple Pharmacophores and Machine Learning Approaches.

    Science.gov (United States)

    Wang, Shuangquan; Sun, Huiyong; Liu, Hui; Li, Dan; Li, Youyong; Hou, Tingjun

    2016-08-01

    Blockade of human ether-à-go-go related gene (hERG) channel by compounds may lead to drug-induced QT prolongation, arrhythmia, and Torsades de Pointes (TdP), and therefore reliable prediction of hERG liability in the early stages of drug design is quite important to reduce the risk of cardiotoxicity-related attritions in the later development stages. In this study, pharmacophore modeling and machine learning approaches were combined to construct classification models to distinguish hERG active from inactive compounds based on a diverse data set. First, an optimal ensemble of pharmacophore hypotheses that had good capability to differentiate hERG active from inactive compounds was identified by the recursive partitioning (RP) approach. Then, the naive Bayesian classification (NBC) and support vector machine (SVM) approaches were employed to construct classification models by integrating multiple important pharmacophore hypotheses. The integrated classification models showed improved predictive capability over any single pharmacophore hypothesis, suggesting that the broad binding polyspecificity of hERG can only be well characterized by multiple pharmacophores. The best SVM model achieved the prediction accuracies of 84.7% for the training set and 82.1% for the external test set. Notably, the accuracies for the hERG blockers and nonblockers in the test set reached 83.6% and 78.2%, respectively. Analysis of significant pharmacophores helps to understand the multimechanisms of action of hERG blockers. We believe that the combination of pharmacophore modeling and SVM is a powerful strategy to develop reliable theoretical models for the prediction of potential hERG liability.

  11. Characterization of heterolithic deposits using electrofacies analysis in the tide-dominated Lower Jurassic Cook Formation (Gullfaks Field, offshore Norway)

    Energy Technology Data Exchange (ETDEWEB)

    Gupta, R. [Imperial College of Science, Technology and Medicine, London (United Kingdom). T.H. Huxley School of Environment, Earth Sciences and Engineering; Johnson, H.D.

    2001-08-01

    A range of heterolithic facies, comprising thinly interbedded (millimetre-decimetre scale) sandstones and mudstones, characterizes the heterogeneous Lower Jurassic Cook Formation, including the productive Cook-3 reservoir in the Gullfaks Field. These heterolithic facies were deposited in a tide-dominated estuarine to deltaic setting and show up as massive 'shaly-sands' on conventional wireline logs. This makes the recognition and discrimination of different heterolithic facies types virtually impossible, which severely limits detailed reservoir geological and petrophysical predictions. This problem has been addressed by undertaking a high resolution electrofacies analysis using core facies as a 'training set' and applying this, through multivariate statistical techniques, to the interpretation of the conventional logs. An electrofacies database was created comprising five genetically linked rock types (ranging from lenticular-wavy bedding, through flaser bedding and into clean/massive sandstones). This electrofacies scheme was validated with reference to c. 125 m of cored section from five wells using gamma-ray, density and neutron logs. Multivariate statistical techniques have enabled probabilistic discrimination of the different types of heterolithic facies down to intervals of only 0.25 to 0.5 m thick, which is considerably greater than could be achieved using conventional well-log evaluation techniques alone. (author)

  12. Detrital minerals from source to sink : tracing Orange River sand from Lesotho to Angola

    Science.gov (United States)

    Garzanti, Eduardo; Vermeesch, Pieter; Andò, Sergio; Resentini, Alberto; Vezzoli, Giovanni; Lustrino, Michele; Padoan, Marta; Pereira, Alcides

    2015-04-01

    high-energy littoral environments from the Orange mouth to south of the Namib Erg, but all minerals get rapidly rounded after passing into the Namib dunefield. Pyroxene and opaques get rounded faster than harder quartz and garnet, but sand mineralogy remains unchanged. Excepting strong transient selective-entrainment effects, physical processes are unable to modify sand composition significantly. Mechanical wear and selective mechanical breakdown can thus be largely neglected in provenance studies even in the case of ultra-long distance transport in high-energy environments dominated by waves or winds. This is particularly true for ancient sandstones, where chemical dissolution during diagenesis exerts an incomparably stronger control on mineralogical assemblages. REFERENCES Garzanti. E., Vermeesch, P., Andò, S., Lustrino, M., Padoan, M., Vezzoli, G., 2014a. Ultra-long distance littoral transport of Orange sand and provenance of the Skeleton Coast Erg (Namibia). Marine Geology, 357, 25-36. Garzanti, E., Resentini, A., Andò, S., Vezzoli, G., Vermeesch, P., 2014b. Physical controls on sand composition and relative durability of detrital minerals during long-distance littoral and eolian transport (coastal Namibia). Sedimentology, DOI: 10.1111/sed.12169.

  13. Modeling of The hERG K+ Channel Blockage Using Online Chemical Database and Modeling Environment (OCHEM).

    Science.gov (United States)

    Li, Xiao; Zhang, Yuan; Li, Huanhuan; Zhao, Yong

    2017-08-30

    Human ether-a-go-go related gene (hERG) K+ channel plays an important role in cardiac action potential. Blockage of hERG channel may result in long QT syndrome (LQTS), even cause sudden cardiac death. Many drugs have been withdrawn from the market because of the serious hERG-related cardiotoxicity. Therefore, it is quite essential to estimate the chemical blockage of hERG in the early stage of drug discovery. In this study, a diverse set of 3721 compounds with hERG inhibition data was assembled from literature. Then, we make full use of the Online Chemical Modeling Environment (OCHEM), which supplies rich machine learning methods and descriptor sets, to build a series of classification models for hERG blockage. We also generated two consensus models based on the top-performing individual models. The consensus models performed much better than the individual models both on 5-fold cross validation and external validation. Especially, consensus model II yielded the prediction accuracy of 89.5 % and MCC of 0.670 on external validation. This result indicated that the predictive power of consensus model II should be stronger than most of the previously reported models. The 17 top-performing individual models and the consensus models and the data sets used for model development are available at https://ochem.eu/article/103592. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

  14. Inner retinal contributions to the multifocal electroretinogram: patients with Leber's hereditary optic neuropathy (LHON). Multifocal ERG in patients with LHON.

    Science.gov (United States)

    Kurtenbach, Anne; Leo-Kottler, Beate; Zrenner, Eberhart

    2004-05-01

    In this study we examine the multifocal electroretinogram (mfERG) recorded from patients suffering from Leber's hereditary optic neuropathy (LHON), a degeneration of the ganglion cell and nerve fibre layers of the retina. We compared the mfERGs recorded from 11 patients with LHON, to those from 11 control subjects. The pattern ERG (PERG) was additionally performed with 9 of the patients. MfERGs were recorded and analysed using the VERIS 3.01 system with a stimulus of 103 equal-sized hexagons. For analysis, hexagons were grouped according to distance from the optic nerve head (ONH) and according to distance from the fovea. Two significant differences were found between the waveforms of the two groups: In the first order kernel, the control group showed a component around 34 ms that decreased with distance from the ONH. This component was reduced in the LHON group of subjects. In the second order (first slice) kernel, the patient group was missing features that decrease with distance from the fovea in the control group. PERG amplitudes showed a significant correlation with the amplitude of the second order mfERG kernel. The results show that the damage to ganglion cells and nerve fibres caused by LHON can be detected in mfERG recordings and indicate that activity from the inner retina can contribute significantly to first and second order waveforms.

  15. The Jurassic of Denmark and Greenland: The Middle Jurassic of western and northern Europe: its subdivisions, geochronology and correlations

    Directory of Open Access Journals (Sweden)

    Callomon, John H.

    2003-10-01

    Full Text Available The palaeogeographic settings of Denmark and East Greenland during the Middle Jurassic are outlined. They lay in the widespread epicontinental seas that covered much of Europe in the post-Triassic transgression. It was a period of continuing eustatic sea-level rise, with only distant connections to world oceans: to the Pacific, via the narrow Viking Straits between Greenland and Norway and hence the arctic Boreal Sea to the north; and to the subtropical Tethys, via some 1200 km of shelf-seas to the south. The sedimentary history of the region was strongly influenced by two factors: tectonism and climate. Two modes of tectonic movement governed basinal evolution: crustal extension leading to subsidence through rifting, such as in the Viking and Central Grabens of the North Sea; and subcrustal thermal upwelling, leading to domal uplift and the partition of marine basins through emergent physical barriers, as exemplified by the Central North Sea Dome with its associated volcanics. The climatic gradient across the 30º of temperate latitude spanned by the European seas governed biotic diversity and biogeography, finding expression in rock-forming biogenic carbonates that dominate sediments in the south and give way to largely siliciclastic sediments in the north. Geochronology of unrivalled finesse is provided by standard chronostratigraphy based on the biostratigraphy of ammonites. The Middle Jurassic saw the onset of considerable bioprovincial endemisms in these guide-fossils, making it necessary to construct parallel standard zonations for Boreal, Subboreal or NW European and Submediterranean Provinces, of which the NW European zonation provides the primary international standard. The current versions of these zonations are presented and reviewed.

  16. Sands at Gusev Crater, Mars

    Science.gov (United States)

    Cabrol, Nathalie A.; Herkenhoff, Kenneth E.; Knoll, Andrew H.; Farmer, Jack D.; Arvidson, Raymond E.; Grin, E.A.; Li, Ron; Fenton, Lori; Cohen, B.; Bell, J.F.; Yingst, R. Aileen

    2014-01-01

    Processes, environments, and the energy associated with the transport and deposition of sand at Gusev Crater are characterized at the microscopic scale through the comparison of statistical moments for particle size and shape distributions. Bivariate and factor analyses define distinct textural groups at 51 sites along the traverse completed by the Spirit rover as it crossed the plains and went into the Columbia Hills. Fine-to-medium sand is ubiquitous in ripples and wind drifts. Most distributions show excess fine material, consistent with a predominance of wind erosion over the last 3.8 billion years. Negative skewness at West Valley is explained by the removal of fine sand during active erosion, or alternatively, by excess accumulation of coarse sand from a local source. The coarse to very coarse sand particles of ripple armors in the basaltic plains have a unique combination of size and shape. Their distribution display significant changes in their statistical moments within the ~400 m that separate the Columbia Memorial Station from Bonneville Crater. Results are consistent with aeolian and/or impact deposition, while the elongated and rounded shape of the grains forming the ripples, as well as their direction of origin, could point to Ma'adim Vallis as a possible source. For smaller particles on the traverse, our findings confirm that aeolian processes have dominated over impact and other processes to produce sands with the observed size and shape patterns across a spectrum of geologic (e.g., ripples and plains soils) and aerographic settings (e.g., wind shadows).

  17. Occurrence of sauropod dinosaur tracks in the Upper Jurassic of Chile (redescription of Iguanodonichnus frenki)

    Science.gov (United States)

    Moreno, Karen; Benton, Michael J.

    2005-12-01

    New observations from the only studied Upper Jurassic dinosaur unit in South America, the Baños del Flaco Formation, Chile, are presented herein. The original description of the ichnospecies Iguanodonichnus frenki contains several mistakes and information that needs updating. Therefore, we provide a redescription, including new data collected in the field, that supports I. frenki as a sauropod in origin on the basis of the following features: step angles average less than 110°; pes prints intersect the trackway midline; pes prints are longer than wide, with the long axis rotated outward; the claw impression of digit I is prominent and directed forward; and claws on digits II, III, and IV are strongly reduced. These morphological characteristics might give clues about the pes morphology of the South American Jurassic sauropods, whose foot bone remains are scarce. The presence of this sauropod ichnospecies in the Late Jurassic agrees with Early-Middle Jurassic faunal associations in South America.

  18. Fe-Ni Micrometorites from Upper Jurassic Cañadon Asfalto Fm., Patagonia, Argentina

    Science.gov (United States)

    Matteini, M.; Hauser, N.; Cabaleri, N.; Silva Nieto, D.; Cuadros, F. A.; Reyes, S.

    2014-09-01

    Microspherules from an upper Jurassic sediments from Patagonia, show mineralogical, geochemical and textural features very similar to those reported for I-type micrometeorites whereas some spherules are interpreted as typical G-type micrometeorites.

  19. Hettangian (early jurassic) plant fossils from Puale Bay (peninsular terrane, Alaska)

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — Middle Hettangian (Early Jurassic) plant macrofossils from the Kamishak Formation at Puale Bay,Alaska occur mainly as leaves and leafy shoots found together with...

  20. Two new species of Paramesosciophilodes (Diptera, Nematocera, Mesosciophilidae from the Middle Jurassic of China

    Directory of Open Access Journals (Sweden)

    Jiaqi Gao

    2015-07-01

    Full Text Available Two new species, Paramesosciophilodes bellus sp. n. and Paramesosciophilodes rarissima sp. n., from the Jiulongshan Formation at Daohugou Village, Inner Mongolia, China, are described in the extinct family Mesosciophilidae. Altogether seven genera with 21 species of mesosciophilids have been described from the Jurassic of Siberia and Kazakhstan, the Lower Cretaceous of Transbaikalia, and the Middle Jurassic of Inner Mongolia. An emended generic diagnosis of Paramesosciophilodes and a list of known taxa of mesosciophilids are provided.

  1. Two new species of Paramesosciophilodes (Diptera, Nematocera, Mesosciophilidae) from the Middle Jurassic of China.

    Science.gov (United States)

    Gao, Jiaqi; Shi, Guifeng; Shih, Chungkun; Ren, Dong

    2015-01-01

    Two new species, Paramesosciophilodesbellus sp. n. and Paramesosciophilodesrarissima sp. n., from the Jiulongshan Formation at Daohugou Village, Inner Mongolia, China, are described in the extinct family Mesosciophilidae. Altogether seven genera with 21 species of mesosciophilids have been described from the Jurassic of Siberia and Kazakhstan, the Lower Cretaceous of Transbaikalia, and the Middle Jurassic of Inner Mongolia. An emended generic diagnosis of Paramesosciophilodes and a list of known taxa of mesosciophilids are provided.

  2. The first euthemistid damsel-dragonfly from the Middle Jurassic of China (Odonata, Epiproctophora, Isophlebioptera

    Directory of Open Access Journals (Sweden)

    Yongjun Li

    2013-01-01

    Full Text Available Sinoeuthemis daohugouensis gen. et sp. n. is the first record of the isophlebiopteran family Euthemistidae from Middle Jurassic of northeast China, while previously this family was restricted to the early Late Jurassic Kazakhstan. This new finding allows us to emend the family diagnosis with hindwing characters. This new species shows a mixture of characters alternatively present in different genera of the two families Euthemistidae and Sphenophlebiidae.

  3. Recovery in ERG gene expression with biventricular pacing in a rabbit model of myocardial infarction

    Directory of Open Access Journals (Sweden)

    Saba S

    2013-05-01

    Full Text Available Samir Saba,* Haider Mehdi,* William Barrington, Fardeen Mehdi, Zahid Islam, Barry LondonCardiovascular Institute of the University of Pittsburgh Medical Center, Pittsburgh, PA, USA*These authors contributed equally to this workBackground: Improved clinical and echocardiographic parameters have been documented with biventricular (BIV pacing in patients after myocardial infarction (MI. We investigated the changes in gene expression in cardiac tissue with BIV pacing, using a rabbit model of MI.Method: New Zealand White rabbits were divided into four groups: sham-operated controls, MI with no pacing, MI with right ventricle (RV pacing (MI + RV, and MI with BIV pacing (MI + BIV. Pacing was initiated 1–2 weeks after the coronary ligation. At 5 weeks, the hearts were excised. The tissue extracted from the left ventricle (LV and RV underwent analysis for protein and messenger ribonucleic acid (mRNA levels.Results: The ether-a-go-go-related gene (ERG protein levels recovered from the base of the LV away from the MI area were two- to threefold lower in the MI and the MI + RV compared with the MI + BIV groups (P = 0.07. The ERG protein levels were similar between the MI + BIV and the control groups. However, the RNA levels were comparable between the four study groups, suggesting that a posttranscriptional mechanism accounted for the difference in protein levels.Conclusion: In this rabbit model of MI, we demonstrated a recovery in ERG protein levels with BIV pacing, after MI. This recovery may underlie some of the benefits seen with BIV pacing in ischemic cardiomyopathy.Keywords: heart failure, biventricular pacing, cardiac reverse remodeling, ether-a-go-go-related gene

  4. DPTM simulation of aeolian sand ripple

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Aeolian sand ripple and its time evolution are simulated by the discrete particle tracing method (DPTM) presented in this paper. The difference between this method and the current methods is that the former can consider the three main factors relevant to the formation of natural aeolian sand ripples,which are the wind-blown sand flux above the sand bed formed by lots of sand particles with different di-ameters,the particle-bed collision and after it the rebound and ejection of sand particles in the sand bed,the saltation of high-speed sand particles and the creep of low-speed sand particles,respectively. The simulated aeolian sand ripple is close to the natural sand ripple not only in basic shape and characteristic,particle size segregation and stratigraphy,but also in formation stages. In addition,three important speeds can be obtained by this method,which are the propagation speed of the saturated aeolian sand ripple and the critical frictional wind speeds of emergence and disappearance of sand ripple.

  5. DPTM simulation of aeolian sand ripple

    Institute of Scientific and Technical Information of China (English)

    ZHENG XiaoJing; BO TianLi; XIE Li

    2008-01-01

    Aeolian sand ripple and its time evolution are simulated by the discrete particle tracing method (DPTM) presented in this paper.The difference between this method and the current methods is that the former can consider the three main factors relevant to the formation of natural aeolian sand ripples, which are the wind-blown sand flux above the sand bed formed by lots of sand particles with different di-ameters, the particle-bed collision and after it the rebound and ejection of sand particles in the sand bed, the saltation of high-speed sand particles and the creep of low-speed sand particles, respectively.The simulated aeolian sand ripple is close to the natural sand ripple not only in basic shape and characteristic, particle size segregation and stratigraphy, but also in formation stages.In addition, three important speeds can be obtained by this method, which are the propagation speed of the saturated aeolian sand ripple and the critical frictional wind speeds of emergence and disappearance of sand ripple.

  6. Dry reusing and wet reclaiming of used sodium silicate sand

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    Based on the characteristics of used sodium silicate sand and the different use requirements for recycled sand, "dry reusing and wet reclaiming of used sodium silicate sand" is considered as the most suitable technique for the used sand. When the recycled sand is used as support sand, the used sand is only reused by dry process including breaking, screening, dust-removal, etc., and it is not necessary that the used sand is reclaimed with strongly rubbing and scraping method, but when the recycled sand is used as facing sand (or single sand), the used sand must be reclaimed by wet method for higher removal rate of the residual binders. The characteristics and the properties of the dry reused sand are compared with the wet reclaimed sand after combining the different use requirements of support sand and facing sand (or single sand), and above the most adaptive scheme has also been validated.

  7. Antisense oligonucleotides on neurobehavior, respiratory, and cardiovascular function, and hERG channel current studies.

    Science.gov (United States)

    Kim, Tae-Won; Kim, Ki-Suk; Seo, Joung-Wook; Park, Shin-Young; Henry, Scott P

    2014-01-01

    Safety Pharmacology studies were conducted in mouse, rat, and non-human primate to determine in vivo effects of antisense oligonucleotides (ASOs) on the central nervous system, respiratory system, and cardiovascular system. Effects on the hERG potassium channel current was evaluated in vitro. ASOs contained terminal 2'-O-methoxyethyl nucleotides, central deoxy nucleotides, and a phosphorothioate backbone. Neurobehavior was evaluated by Functional Observatory Battery in rodents. Respiratory function was directly measured in rodents by plethysmograph; respiratory rate and blood gases were measured in monkey. Basic cardiovascular endpoints were measured in rat; cardiovascular evaluation in monkey involved implanted telemetry units. In single and repeat dose studies ASOs were administered by subcutaneous injection at up to 300 mg/kg, 250 mg/kg, and 40 mg/kg in mouse, rat, or monkey, respectively. Assays were performed in HEK293 or CHO-K1 cells, stably transfected with hERG cDNA, at ASO concentrations of up to 300 μM. No apparent effects were noted for respiratory or CNS function. Continuous monitoring of the cardiovascular system in monkey demonstrated no ASO-related changes in blood pressures, heart rate, or ECG and associated parameters (i.e., QRS duration). Specific assessment of the hERG potassium channel indicated no potential for actions on ventricular repolarization or modest effects only at excessive concentrations. The absence of direct actions on neurobehavior and respiratory function associated with the administration of ASOs in safety pharmacology core battery studies is consistent with published toxicology studies. The combination of in vitro hERG studies and in vivo studies in rat and monkey are consistent with no direct actions by ASOs on cardiac cell function or electrical conduction at relevant concentrations and dose levels. Taken as a whole, dedicated studies focused on the safety pharmacology of specific organ systems do not appear to add

  8. Lack of ERG-antibody in Benign Mimickers of Prostate Cancer

    Directory of Open Access Journals (Sweden)

    Bachurska Svitlana Y.

    2016-03-01

    Full Text Available Introduction: Prostate carcinoma (PC is the second most diagnosed cancer in men worldwide. Prostate tissue in needle biopsy expresses a wide variety of architectural patterns some of which are difficult to interpret. Immunohistochemical markers, such as AMACR, p63 and 34βE12 that are currently used in diagnosing prostate cancer, are of great value, but often their interpretation is ambiguous. In 2005 Tomlins et al. identified an emerging marker, erythroblastosis E26 rearrangement gene (ERG, which is a member of the family of genes encoding erythroblast-transformation specific transcription factors (ETS with frequent expression in PC.

  9. MicroRNA-224 targets ERG2 and contributes to malignant progressions of meningioma

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Maomao; Deng, Xiaodong; Ying, Qi; Jin, Tingyan [The 411 Hospital of PLA, Department of Neurosurgery, 15 Dongjiangwan Road, Shanghai 200081 (China); Li, Ming [The 81 Hospital of PLA, Department of Neurosurgery, 34 Taiping Road, Nanjing 210002 (China); Liang, Chong, E-mail: liangchong1984@163.com [The 81 Hospital of PLA, Department of Neurosurgery, 34 Taiping Road, Nanjing 210002 (China)

    2015-05-01

    MicroRNA-224 is overexpressed in various malignant tumors with poor prognosis, which plays a critical role in biological processes including cell proliferation, apoptosis and several developmental and physiological progressions. However, the potential association between miR-224 and clinical outcome in patients with meningiomas remains unknown. Here, we investigate miR-224 expression and biological functions in meningiomas. MiR-224 expression was measured by Northern blot analysis and quantitative reverse transcription-polymerase chain reaction (qRT-PCR) in meningioma and normal brain tissues. Kaplan–Meier analysis and Cox regression analysis were used to exam its correlation with clinicopathological features and prognostic value. The biological effects of miR-224 on the cell proliferation and apoptosis in meningioma cells were examined by MTT assay and apoptosis assay. We found the expression levels of miR-224 were significantly higher in meningioma tissues than that in normal brain, positively correlated with advanced pathological grade. Kaplan–Meier analysis indicated that meningioma patients with low miR-224 expression exhibited significantly prolonged overall and recurrence-free survival. Furthermore, we demonstrated that ERG2 was an identical candidate target gene of MiR-224 in vitro. Our results indicated that downregulation of miR-224 suppressed cell growth and resulted in the enhancement of cell apoptosis through activation of the ERG2-BAK-induced apoptosis pathway. Our findings imply the miR-224 expression could predict the overall survival and recurrence-free survival of patients with meningioma and it might be a promising therapeutic target for treating malignant meningiomas. - Highlights: • MiR-224 expression is correlates with prognosis in meningioma patients. • ERG2 is a novel downstream target of miR-224. • MiR-224 suppressed cell growth and enhanced apoptosis in IOMM-Lee and CH157 cells. • MiR-224 is an upstream regulator of the ERG2

  10. Oncogenicity and Selective Inhibition of ERG Splicing Variants in Prostate Cancer

    Science.gov (United States)

    2012-03-01

    promoters and the red circles mark the principal polyA sites. On the bottom, the protein domain structure is schematized with the corresponding...includes variants showing skipping of exons 2, 5, 7 and 8; usage of a proximal (Short) polyA site in exon 11 (11SpA) or of an additional intronic one...exons 4 and 7b) and three main polyA sites (7bpA, 11LpA, 12pA) combine to generate 30 principal mRNA variants, which can encode 15 different ERG

  11. Post-Jurassic tectonic evolution of Southeast Asia

    Science.gov (United States)

    Zahirovic, Sabin; Seton, Maria; Dietmar Müller, R.; Flament, Nicolas

    2014-05-01

    The accretionary growth of Asia, linked to long-term convergence between Eurasia, Gondwana-derived blocks and the Pacific, resulted in a mosaic of terranes for which conflicting tectonic interpretations exist. Here, we propose solutions to a number of controversies related to the evolution of Sundaland through a synthesis of published geological data and plate reconstructions that reconcile both geological and geophysical constraints with plate driving forces. We propose that West Sulawesi, East Java and easternmost Borneo rifted from northern Gondwana in the latest Jurassic, collided with an intra-oceanic arc at ~115 Ma and subsequently sutured to Sundaland by 80 Ma. Although recent models argue that the Southwest Borneo core accreted to Sundaland at this time, we use volcanic and biogeographic constraints to show that the core of Borneo was on the Asian margin since at least the mid Jurassic. This northward transfer of Gondwana-derived continental fragments required a convergent plate boundary in the easternmost Tethys that we propose gave rise to the Philippine Archipelago based on the formation of latest Jurassic-Early Cretaceous supra-subduction zone ophiolites on Halmahera, Obi Island and Luzon. The Late Cretaceous marks the shift from Andean-style subduction to back-arc opening on the east Asian margin. Arc volcanism along South China ceased by ~60 Ma due to the rollback of the Izanagi slab, leading to the oceanward migration of the volcanic arc and the opening of the Proto South China Sea (PSCS). We use the Apennines-Tyrrhenian system in the Mediterranean as an analogue to model this back-arc. Continued rollback detaches South Palawan, Mindoro and the Semitau continental blocks from the stable east Asian margin and transfers them onto Sundaland in the Eocene to produce the Sarawak Orogeny. The extrusion of Indochina and subduction polarity reversal along northern Borneo opens the South China Sea and transfers the Dangerous Grounds-Reed Bank southward to

  12. A Jurassic Shock-Aftershock Earthquake Sequence Recorded by Small Clastic Pipes and Dikes within Dune Cross-Strata, Zion National Park, Utah

    Science.gov (United States)

    Loope, D. B.; Zlotnik, V. A.; Kettler, R. M.; Pederson, D. T.

    2012-12-01

    dune lee slope through a pipe, the erupted sand dried and was buried by climbing wind-ripple strata as the large dune continued to advance downwind. The mapped cluster recording eight distinct seismic events lies within thin-laminated sediment that was deposited by wind ripples during 1 m (~ 1 year) of southeastward dune migration. We conclude that the small pipes and dikes of our study sites are products of numerous >MM 5 earthquakes, some of which recurred at intervals of less than 2 months. We interpret one small cluster of pipes and dikes with well-defined upward terminations as a distinct shock-aftershock sequence. Because the largest modern earthquakes can produce surface liquefaction only up to about 175 km from their epicenters, the Jurassic epicenters must have been well within that distance. The tendency of modern plate boundaries to produce high-frequency aftershocks suggests that the epicenter for this Jurassic sequence lay to the southwest, within the plate boundary zone (not within continental rocks to the east). As eolian dunes steadily migrate over interdune surfaces underlain by water-saturated dune cross-strata, the thin, distinct laminae produced by the wind ripples that occupy dune toes can faithfully record high-frequency seismic events.

  13. Sand and Water Table Play

    Science.gov (United States)

    Wallace, Ann H.; White, Mary J.; Stone, Ryan

    2010-01-01

    The authors observed preschoolers engaged at the sand and water table to determine if math could be found within their play. Wanting to understand how children interact with provided materials and what kinds of math ideas they explore during these interactions, the authors offer practical examples of how such play can promote mathematical…

  14. Sand and Water Table Play

    Science.gov (United States)

    Wallace, Ann H.; White, Mary J.; Stone, Ryan

    2010-01-01

    The authors observed preschoolers engaged at the sand and water table to determine if math could be found within their play. Wanting to understand how children interact with provided materials and what kinds of math ideas they explore during these interactions, the authors offer practical examples of how such play can promote mathematical…

  15. Impact on sand and water

    NARCIS (Netherlands)

    Bergmann, R.P.H.M.

    2007-01-01

    In this thesis we investigate the impact of a body on sand and water. When a body impacts a free surface in the inertial regime the series of events is the following: On impact material is blown away in all directions and an impact cavity forms. Due to the hydrostatic pressure from the sides the cav

  16. Silo model tests with sand

    DEFF Research Database (Denmark)

    Munch-Andersen, Jørgen

    Tests have been carried out in a large silo model with Leighton Buzzard Sand. Normal pressures and shear stresses have been measured during tests carried out with inlet and outlet geometry. The filling method is a very important parameter for the strength of the mass and thereby the pressures...

  17. Broad-scale patterns of late jurassic dinosaur paleoecology.

    Directory of Open Access Journals (Sweden)

    Christopher R Noto

    Full Text Available BACKGROUND: There have been numerous studies on dinosaur biogeographic distribution patterns. However, these distribution data have not yet been applied to ecological questions. Ecological studies of dinosaurs have tended to focus on reconstructing individual taxa, usually through comparisons to modern analogs. Fewer studies have sought to determine if the ecological structure of fossil assemblages is preserved and, if so, how dinosaur communities varied. Climate is a major component driving differences between communities. If the ecological structure of a fossil locality is preserved, we expect that dinosaur assemblages from similar environments will share a similar ecological structure. METHODOLOGY/PRINCIPAL FINDINGS: This study applies Ecological Structure Analysis (ESA to a dataset of 100+ dinosaur taxa arranged into twelve composite fossil assemblages from around the world. Each assemblage was assigned a climate zone (biome based on its location. Dinosaur taxa were placed into ecomorphological categories. The proportion of each category creates an ecological profile for the assemblage, which were compared using cluster and principal components analyses. Assemblages grouped according to biome, with most coming from arid or semi-arid/seasonal climates. Differences between assemblages are tied to the proportion of large high-browsing vs. small ground-foraging herbivores, which separates arid from semi-arid and moister environments, respectively. However, the effects of historical, taphonomic, and other environmental factors are still evident. CONCLUSIONS/SIGNIFICANCE: This study is the first to show that the general ecological structure of Late Jurassic dinosaur assemblages is preserved at large scales and can be assessed quantitatively. Despite a broad similarity of climatic conditions, a degree of ecological variation is observed between assemblages, from arid to moist. Taxonomic differences between Asia and the other regions demonstrate at

  18. Chasing the Late Jurassic APW Monster Shift in Ontario Kimberlites

    Science.gov (United States)

    Kent, D. V.; Muttoni, G.; Gee, J. S.; Kjarsgaard, B. A.

    2012-12-01

    A 30° gap was recognized in a composite APW path when global poles from predominantly igneous rocks were assembled in North American coordinates using plate reconstructions (Kent & Irving 2010 JGR). The 'monster shift' occurred between a 160-190 Ma cluster of mean poles at 75-80°N 90-110°E to a 140-145 Ma grouping centered at 60-65°N ~200°E. There are hardly any intermediate igneous poles whereas the rather divergent directions from the Late Jurassic Morrison Formation published by Steiner & Helsley (1975 GSA Bulletin) are subject to adjustments for Colorado Plateau rotation and sedimentary inclination error, neither of which are precisely known for this redbed unit sampled in Colorado. On the other hand, similar large rapid swings have been recognized in the Late Jurassic APW path for Adria (Channell et al. 2010 Paleo3), suggesting a global phenomena. In an effort to fill the data gap between ~145 and 160 Ma, we sampled accessible outcrops/subcrops of kimberlites in the Timiskaming area of Ontario, Canada, that are associated with high precision U-Pb perovskite ages (Heamon & Kjarsgaard 2000 EPSL). We report initial results from two of the intrusions: the 153.6±2.4 Ma Peddie kimberlite from outcrop and the Triple B kimberlite that was accessible by trenching and is assumed to be the same age as the nearby 153.7±1.8 Ma Seed kimberlite as delineated by aeromagnetic surveys and borings. Systematic progressive thermal demagnetization indicated in each unit a dominant characteristic component with unblocking temperatures to 575° that presumably reflect a magnetite carrier that will be checked by further rock magnetic experiments. Samples from the Peddie kimberlite had stable downward (normal polarity) magnetizations whose mean direction gives a paleopole at 73°N 184°E. In contrast, samples from the Triple B kimberlite have upward (reverse polarity) magnetizations with a well-grouped direction whose (north) paleopole is 78°N 197°E, proximal to the Peddie

  19. experimental studies of sand production from unconsolidated ...

    African Journals Online (AJOL)

    ES Obe

    Production of sand during oil and gas exploration causes severe operational prob- ... duction such as risk of well failure, erosion of pipelines and surface facilities, sand separa- tion and disposal ... ment, theoretical and numerical analysis have.

  20. UK silica sand resources for fracking

    OpenAIRE

    Mitchell, Clive

    2013-01-01

    UK silica sand resources for fracking Clive Mitchell, Industrial Minerals Specialist, British Geological Survey, Keyworth, Nottingham, NG12 5GG Email: Silica sand is high purity quartz sand that is mainly used for glass production, as foundry sand, in horticulture, leisure and other industrial uses. One specialist use is as a ‘proppant’ to enhance oil and gas recovery. This presentation will focus on this application, particularly for shale gas recovery where it is mo...

  1. Loss of miR-449a in ERG-associated prostate cancer promotes the invasive phenotype by inducing SIRT1.

    Science.gov (United States)

    Kumar, Parameet; Sharad, Shashwat; Petrovics, Gyorgy; Mohamed, Ahmed; Dobi, Albert; Sreenath, Taduru L; Srivastava, Shiv; Biswas, Roopa

    2016-04-19

    Epigenetic regulation by SIRT1, a multifaceted NAD+-dependent protein deacetylase, is one of the most common factors modulating cellular processes in a broad range of diseases, including prostate cancer (CaP). SIRT1 is over-expressed in CaP cells, however the associated mechanism is not well understood. To identify whether specific microRNAs might mediate this linkage, we have screened a miRNA library for differential expression in ERG-associated CaP tissues. Of 20 differentially and significantly expressed miRNAs that distinguish ERG-positive tumors from ERG-negative tumors, we find miR-449a is highly suppressed in ERG-positive tumors. We establish that SIRT1 is a direct target of miR-449a and is also induced by ERG in ERG-associated CaP. Our data suggest that attenuation of miR-449a promotes the invasive phenotype of the ERG-positive CaP in part by inducing the expression of SIRT1 in prostate cancer cells. Furthermore, we also find that suppression of SIRT1 results in a significant reduction in ERG expression in ERG-positive CaP cells, indicating a feed-back regulatory loop associated with ERG, miR-449a and SIRT1. We also report that ERG suppresses p53 acetylation perhaps through miR-449a-SIRT1 axis in CaP cells. Our findings provide new insight into the function of miRNAs in regulating ERG-associated CaP. Thus, miR-449a activation or SIRT1 suppression may represent new therapeutic opportunity for ERG-associated CaP.

  2. The TMPRSS2-ERG Gene Fusion Blocks XRCC4-Mediated Nonhomologous End-Joining Repair and Radiosensitizes Prostate Cancer Cells to PARP Inhibition.

    Science.gov (United States)

    Chatterjee, Payel; Choudhary, Gaurav S; Alswillah, Turkeyah; Xiong, Xiahui; Heston, Warren D; Magi-Galluzzi, Cristina; Zhang, Junran; Klein, Eric A; Almasan, Alexandru

    2015-08-01

    Exposure to genotoxic agents, such as ionizing radiation (IR), produces DNA damage, leading to DNA double-strand breaks (DSB); IR toxicity is augmented when the DNA repair is impaired. We reported that radiosensitization by a PARP inhibitor (PARPi) was highly prominent in prostate cancer cells expressing the TMPRSS2-ERG gene fusion protein. Here, we show that TMPRSS2-ERG blocks nonhomologous end-joining (NHEJ) DNA repair by inhibiting DNA-PKcs. VCaP cells, which harbor TMPRSS2-ERG and PC3 cells that stably express it, displayed γH2AX and 53BP1 foci constitutively, indicating persistent DNA damage that was absent if TMPRSS2-ERG was depleted by siRNA in VCaP cells. The extent of DNA damage was enhanced and associated with TMPRSS2-ERG's ability to inhibit DNA-PKcs function, as indicated by its own phosphorylation (Thr2609, Ser2056) and that of its substrate, Ser1778-53BP1. DNA-PKcs deficiency caused by TMPRSS2-ERG destabilized critical NHEJ components on chromatin. Thus, XRCC4 was not recruited to chromatin, with retention of other NHEJ core factors being reduced. DNA-PKcs autophosphorylation was restored to the level of parental cells when TMPRSS2-ERG was depleted by siRNA. Following IR, TMPRSS2-ERG-expressing PC3 cells had elevated Rad51 foci and homologous recombination (HR) activity, indicating that HR compensated for defective NHEJ in these cells, hence addressing why TMPRSS2-ERG alone did not lead to radiosensitization. However, the presence of TMPRSS2-ERG, by inhibiting NHEJ DNA repair, enhanced PARPi-mediated radiosensitization. IR in combination with PARPi resulted in enhanced DNA damage in TMPRSS2-ERG-expressing cells. Therefore, by inhibiting NHEJ, TMPRSS2-ERG provides a synthetic lethal interaction with PARPi in prostate cancer patients expressing TMPRSS2-ERG. ©2015 American Association for Cancer Research.

  3. Treating tar sands formations with karsted zones

    Energy Technology Data Exchange (ETDEWEB)

    Vinegar, Harold J. (Bellaire, TX); Karanikas, John Michael (Houston, TX)

    2010-03-09

    Methods for treating a tar sands formation are described herein. The tar sands formation may have one or more karsted zones. Methods may include providing heat from one or more heaters to one or more karsted zones of the tar sands formation to mobilize fluids in the formation. At least some of the mobilized fluids may be produced from the formation.

  4. Efficient diterpene production in yeast by engineering Erg20p into a geranylgeranyl diphosphate synthase.

    Science.gov (United States)

    Ignea, Codruta; Trikka, Fotini A; Nikolaidis, Alexandros K; Georgantea, Panagiota; Ioannou, Efstathia; Loupassaki, Sofia; Kefalas, Panagiotis; Kanellis, Angelos K; Roussis, Vassilios; Makris, Antonios M; Kampranis, Sotirios C

    2015-01-01

    Terpenes have numerous applications, ranging from pharmaceuticals to fragrances and biofuels. With increasing interest in producing terpenes sustainably and economically, there has been significant progress in recent years in developing methods for their production in microorganisms. In Saccharomyces cerevisiae, production of the 20-carbon diterpenes has so far proven to be significantly less efficient than production of their 15-carbon sesquiterpene counterparts. In this report, we identify the modular structure of geranylgeranyl diphosphate synthesis in yeast to be a major limitation in diterpene yields, and we engineer the yeast farnesyl diphosphate synthase Erg20p to produce geranylgeranyl diphosphate. Using a combination of protein and genetic engineering, we achieve significant improvements in the production of sclareol and several other isoprenoids, including cis-abienol, abietadiene and β-carotene. We also report the development of yeast strains carrying the engineered Erg20p, which support efficient isoprenoid production and can be used as a dedicated chassis for diterpene production or biosynthetic pathway elucidation. The design developed here can be applied to the production of any GGPP-derived isoprenoid and is compatible with other yeast terpene production platforms.

  5. Structural insight into the transmembrane segments 3 and 4 of the hERG potassium channel.

    Science.gov (United States)

    Li, Qingxin; Wong, Ying Lei; Ng, Hui Qi; Gayen, Shovanlal; Kang, CongBao

    2014-12-01

    The hERG (human ether-a-go-go related gene) potassium channel is a voltage-gated potassium channel containing an N-terminal domain, a voltage-sensor domain, a pore domain and a C-terminal domain. The transmembrane segment 4 (S4) is important for sensing changes of membrane potentials through positively charge residues. A construct containing partial S2-S3 linker, S3, S4 and the S4-S5 linker of the hERG channel was purified into detergent micelles. This construct exhibits good quality NMR spectrum when it was purified in lyso-myristoyl phosphatidylglycerol (LMPG) micelles. Structural study showed that S3 contains two short helices with a negatively charged surface. The S4 and S4-S5 linker adopt helical structures. The six positively charged residues in S4 localize at different sides, suggesting that they may have different functions in channel gating. Relaxation studies indicated that S3 is more flexible than S4. The boundaries of S3-S4 and S4-S4-S5 linker were identified. Our results provided structural information of the S3 and S4, which will be helpful to understand their roles in channel gating.

  6. THE TRIASSIC/JURASSIC BOUNDARY IN THE ANDES OF ARGENTINA

    Directory of Open Access Journals (Sweden)

    ALBERTO C. RICCARDI

    2004-03-01

    Full Text Available The Arroyo Malo Formation at Alumbre Creek, on the northern bank of the Atuel River, west central Argentina, comprises a c. 300 m thick continuous marine succession across the Triassic-Jurassic System boundary, consisting of massive and laminated pelites indicative of a slope depositional environment. Late Triassic invertebrates, including ammonoids, nautiloids, bivalves, gastropods, brachiopods and corals are restricted to the lower 150 m. Beds between 125-135 m from the bottom yield Choristoceras cf. marshi Hauer, a species found in the Marshi/Crickmayi Zone of Europe and North America, together with loose fragments of Psiloceras cf. pressum Hillebrandt, coeval with the lower to middle part of the Hettangian Planorbis Zone. About 80 m higher are beds yielding Psiloceras cf. rectocostatum Hillebrandt, a species that gives name to an Andean biozone partially coeval with the Johnstoni and Plicatulum Subzones, upper Planorbis Zone. Other fossils recorded in the Rhaetian strata of this section are foraminifers, ostracods and plant remains identified as Zuberia cf. zuberi (Szaj. Freng. and Clathropteris sp. The section was also sampled for conodonts and radiolarians, thus far with negative results. A palaeomagnetic study is underway.

  7. Post-Jurassic mammal-like reptile from the Palaeocene.

    Science.gov (United States)

    Fox, R C; Youzwyshyn, G P; Krause, D W

    1992-07-16

    Mammal-like reptiles of the order Therapsida document the emergence of mammals from more primitive synapsids and are of unique zoological and palaeontological interest on that account. Therapsids, first appearing in the Early Permian, were thought to become extinct in the Middle Jurassic, soon after the Late Triassic origin of mammals. Here, however, we report the discovery of a therapsid from the late Palaeocene, 100 million years younger than the youngest previous occurrence of the order. This discovery nearly doubles the stratigraphic range of therapsids and furnishes their first record from the Cenozoic. The documenting fossils, an incomplete dentary containing three teeth, and four isolated teeth from other, conspecific individuals (Fig. 1), are from the Paskapoo Formation, at Cochrane, Alberta, Canada, from beds yielding a diverse mammalian fauna of early Tiffanian age. These specimens are catalogued in the collections of the University of Alberta Laboratory for Vertebrate Paleontology (UALVP) and provide the basis for a new taxon, as named and described below: (see text)

  8. Boron-containing organic pigments from a Jurassic red alga

    Science.gov (United States)

    Wolkenstein, Klaus; Gross, Jürgen H.; Falk, Heinz

    2010-01-01

    Organic biomolecules that have retained their basic chemical structures over geological periods (molecular fossils) occur in a wide range of geological samples and provide valuable paleobiological, paleoenvironmental, and geochemical information not attainable from other sources. In rare cases, such compounds are even preserved with their specific functional groups and still occur within the organisms that produced them, providing direct information on the biochemical inventory of extinct organisms and their possible evolutionary relationships. Here we report the discovery of an exceptional group of boron-containing compounds, the borolithochromes, causing the distinct pink coloration of well-preserved specimens of the Jurassic red alga Solenopora jurassica. The borolithochromes are characterized as complicated spiroborates (boric acid esters) with two phenolic moieties as boron ligands, representing a unique class of fossil organic pigments. The chiroptical properties of the pigments unequivocally demonstrate a biogenic origin, at least of their ligands. However, although the borolithochromes originated from a fossil red alga, no analogy with hitherto known present-day red algal pigments was found. The occurrence of the borolithochromes or their possible diagenetic products in the fossil record may provide additional information on the classification and phylogeny of fossil calcareous algae. PMID:20974956

  9. Eurycormus – Eurypoma, two Jurassic actinopterygian genera with mixed identity

    Directory of Open Access Journals (Sweden)

    G. Arratia

    2007-02-01

    Full Text Available Three Late Jurassic actinopterygian species are commonly placed in the genus Eurycormus: E. egertoni, E. grandis and E. speciosus. A detailed comparison supports an earlier assignment to two different genera, Eurycormus Wagner, 1863 (speciosus and Eurypoma Huxley, 1866 (E. egertoni and E. grande. Systematically, the two genera are only distantly related; Eurycormus belongs to the Teleosteomorpha, whereas Eurypoma is a halecomorph closely related to or a member of the Caturoidea within the Amiiformes. Drei oberjurassische Actinopterygier-Arten, egertoni, grandis und speciosus, werden gewöhnlich zur Gattung Eurycormus gestellt. Ein detaillierter Vergleich der drei Arten bestätigt eine frühere Zuordnung zu zwei verschiedenen Gattungen, Eurycormus Wagner, 1863 (speciosus und Eurypoma Huxley, 1866 (E. egertoni und E. grande, die zwei höheren Taxa innerhalb der Neopterygii zugeordnet werden: Eurycormus zu den Teleosteomorpha und Eurypoma zu den Amiiformes innerhalb der Halecomorphi, möglicherweise nahe oder innerhalb der Caturoidea. doi:10.1002/mmng.200600016

  10. Ichnological evidence of Megalosaurid Dinosaurs Crossing Middle Jurassic Tidal Flats.

    Science.gov (United States)

    Razzolini, Novella L; Oms, Oriol; Castanera, Diego; Vila, Bernat; Santos, Vanda Faria Dos; Galobart, Àngel

    2016-08-19

    A new dinosaur tracksite in the Vale de Meios quarry (Serra de Aire Formation, Bathonian, Portugal)preserves more than 700 theropod tracks. They are organized in at least 80 unidirectional trackways arranged in a bimodal orientation pattern (W/NW and E/SE). Quantitative and qualitative comparisons reveal that the large tridactyl, elongated and asymmetric tracks resemble the typical Late Jurassic-Early Cretaceous Megalosauripus ichnogenus in all morphometric parameters. Few of the numerous tracks are preserved as elite tracks while the rest are preserved as different gradients of modified true tracks according to water content, erosive factors, radial fractures and internal overtrack formations. Taphonomical determinations are consistent with paleoenvironmental observations that indicate an inter-tidal flat located at the margin of a coastal barrier. The Megalosauripus tracks represent the oldest occurrence of this ichnotaxon and are attributed to large megalosaurid dinosaurs. Their occurrence in Vale de Meios tidal flat represents the unique paleoethological evidence of megalosaurids moving towards the lagoon, most likley during the low tide periods with feeding purposes.

  11. Ichnological evidence of Megalosaurid Dinosaurs Crossing Middle Jurassic Tidal Flats

    Science.gov (United States)

    Razzolini, Novella L.; Oms, Oriol; Castanera, Diego; Vila, Bernat; Santos, Vanda Faria Dos; Galobart, Àngel

    2016-08-01

    A new dinosaur tracksite in the Vale de Meios quarry (Serra de Aire Formation, Bathonian, Portugal)preserves more than 700 theropod tracks. They are organized in at least 80 unidirectional trackways arranged in a bimodal orientation pattern (W/NW and E/SE). Quantitative and qualitative comparisons reveal that the large tridactyl, elongated and asymmetric tracks resemble the typical Late Jurassic-Early Cretaceous Megalosauripus ichnogenus in all morphometric parameters. Few of the numerous tracks are preserved as elite tracks while the rest are preserved as different gradients of modified true tracks according to water content, erosive factors, radial fractures and internal overtrack formations. Taphonomical determinations are consistent with paleoenvironmental observations that indicate an inter-tidal flat located at the margin of a coastal barrier. The Megalosauripus tracks represent the oldest occurrence of this ichnotaxon and are attributed to large megalosaurid dinosaurs. Their occurrence in Vale de Meios tidal flat represents the unique paleoethological evidence of megalosaurids moving towards the lagoon, most likley during the low tide periods with feeding purposes.

  12. Lower Jurassic beds with bivalves in south Slovenia

    Directory of Open Access Journals (Sweden)

    Irena Debeljak

    1995-12-01

    Full Text Available The Lower Jurassic beds of south Slovenia outcrop on a surface of several hundred km^ with their thickness in places exceeding 300 meters. They were deposited on the Dinaric Carbonate Platform. In them rich accumulations of characteristic bivalves occur that in Pliensbachian and Toarcian inhabited the wide interconnected shallow water regions of the western and southern margins of Tethysand the eastern Pacific. The most interesting are three large bivalve species:Lithiotis problematica, Cochlearites loppianus and Lithiopedalion scutatus.In addition, numerous other genera can be found: Gervilleiopema, Mytilus, Opisoma and Pachyrisma (with subgenera Pachymegalodon and Durga.The bivalves formed in the region of south Slovenia, in the prevailingly quiet environment of the restricted shelf, sea-bottom mats or biostromes. Their shells can be only rarely found in their growth position. The horizon with bivalves ("lithiotid horizon" in south Slovenia is attributed to Pliensbachian (Domerian. It isup to 75 metres thick and it almost does not pinch out. Within it individual lumachelles of bivalves occur which are from several centimetres to ten metres thick.They are almost exclusively associated with dark, micritic, in places marly limestone and bituminous dolomite. The biodiversity in lumachelles is very low. The intermediate beds that do not contain bivalves mostly consist of oolitic and biospariticlimestone. In this article some localities from various areas of the carbonate platform are described. Considered are paleogeographical and paleoecological conditions that permitted the existence of this typical bivalve fauna.

  13. Neuroanatomy of the marine Jurassic turtle Plesiochelys etalloni (Testudinata, Plesiochelyidae).

    Science.gov (United States)

    Carabajal, Ariana Paulina; Sterli, Juliana; Müller, Johannes; Hilger, André

    2013-01-01

    Turtles are one of the least explored clades regarding endocranial anatomy with few available descriptions of the brain and inner ear of extant representatives. In addition, the paleoneurology of extinct turtles is poorly known and based on only a few natural cranial endocasts. The main goal of this study is to provide for the first time a detailed description of the neuroanatomy of an extinct turtle, the Late Jurassic Plesiochelysetalloni, including internal carotid circulation, cranial endocast and inner ear, based on the first digital 3D reconstruction using micro CT scans. The general shape of the cranial endocast of P. etalloni is tubular, with poorly marked cephalic and pontine flexures. Anteriorly, the olfactory bulbs are clearly differentiated suggesting larger bulbs than in any other described extinct or extant turtle, and indicating a higher capacity of olfaction in this taxon. The morphology of the inner ear of P. etalloni is comparable to that of extant turtles and resembles those of slow-moving terrestrial vertebrates, with markedly low, short and robust semicircular canals, and a reduced lagena. In P. etalloni the arterial pattern is similar to that found in extant cryptodires, where all the internal carotid branches are protected by bone. As the knowledge of paleoneurology in turtles is scarce and the application of modern techniques such as 3D reconstructions based on CT scans is almost unexplored in this clade, we hope this paper will trigger similar investigations of this type in other turtle taxa.

  14. Sand Waves. Report 1. Sand Wave Shoaling in Navigation Channels

    Science.gov (United States)

    1992-09-01

    heights range from 0.8 m in the Minas Basin, Bay of Fundy (Dalrymple 1984) to 6.0 m in the Bahia Blanca Estuary, Argentina (Aliotta and Perillo 1987...26 PART IV: SITE-SPECIFIC SAND WAVE SHOALING PROBLEMS .. ........ 30 Columbia River Navigation Channel ........ ............... .. 30 Panama ...problem location discussed in this report is at St. Andrew Bay near Panama City, Florida. A relatively short section of the jettied inlet channel requires

  15. Jurassic sedimentary evolution of southern Junggar Basin:Implication for palaeoclimate changes in northern Xinjiang Uygur Autonomous Region, China

    Institute of Scientific and Technical Information of China (English)

    Shun-Li Li; Xing-He Yu; Cheng-Peng Tan; Ronald Steel

    2014-01-01

    Junggar Basin, located in northern Xinjiang, presents continuous and multi-kilometer-thick strata of the Jurassic deposits. The Jurassic was entirely terrestrial lfuvial and lacustrine deltaic sedimentation. Eight outcrop sections across the Jurassic strata were meas-ured at a resolution of meters in southern Junggar Basin. Controlling factors of sedimentary evolution and palaeoclimate changes in Junggar Basin during the Jurassic were discussed based on lithology, fossils and tectonic setting. In the Early to Middle Jurassic, the warm and wide Tethys Sea generated a strong monsoonal circulation over the central Asian continent, and provided adequate moisture for Junggar Basin. Coal-bearing strata of the Badaowan, Sangonghe, and Xishanyao Formations were developed under warm and humid palaeocli-mate in Junggar Basin. In the late Middle Jurassic, Junggar Basin was in a semi-humid and semi-arid environment due to global warming event. Stratigraphy in the upper part of the Mid-dle Jurassic with less plant fossils became multicolor or reddish from dark color sediments. During the Late Jurassic, collision of Lhasa and Qiangtang Block obstructed monsoon from the Tethys Sea. A major change in climate from semi-humid and semi-arid to arid conditions took place, and reddish strata of the Upper Jurassic were developed across Junggar Basin.

  16. Jurassic sedimentary evolution of southern Junggar Basin:Implication for palaeoclimate changes in northern Xinjiang Uygur Autonomous Region,China

    Institute of Scientific and Technical Information of China (English)

    Shun-Li; Li; Xing-He; Yu; Cheng-Peng; Tan; Ronald; Steel

    2014-01-01

    Junggar Basin,located in northern Xinjiang,presents continuous and multikilometer-thick strata of the Jurassic deposits.The Jurassic was entirely terrestrial fluvial and lacustrine deltaic sedimentation.Eight outcrop sections across the Jurassic strata were measured at a resolution of meters in southern Junggar Basin.Controlling factors of sedimentary evolution and palaeoclimate changes in Junggar Basin during the Jurassic were discussed based on lithology,fossils and tectonic setting.In the Early to Middle Jurassic,the warm and wide Tethys Sea generated a strong monsoonal circulation over the central Asian continent,and provided adequate moisture for Junggar Basin.Coal-bearing strata of the Badaowan,Sangonghe,and Xishanyao Formations were developed under warm and humid palaeoclimate in Junggar Basin.In the late Middle Jurassic,Junggar Basin was in a semi-humid and semi-arid environment due to global warming event.Stratigraphy in the upper part of the Middle Jurassic with less plant fossils became multicolor or reddish from dark color sediments.During the Late Jurassic,collision of Lhasa and Qiangtang Block obstructed monsoon from the Tethys Sea.A major change in climate from semi-humid and semi-arid to arid conditions took place,and reddish strata of the Upper Jurassic were developed across Junggar Basin.

  17. Jurassic sedimentary evolution of southern Junggar Basin: Implication for palaeoclimate changes in northern Xinjiang Uygur Autonomous Region, China

    Directory of Open Access Journals (Sweden)

    Shun-Li Li

    2014-04-01

    Full Text Available Junggar Basin, located in northern Xinjiang, presents continuous and multikilometer-thick strata of the Jurassic deposits. The Jurassic was entirely terrestrial fluvial and lacustrine deltaic sedimentation. Eight outcrop sections across the Jurassic strata were measured at a resolution of meters in southern Junggar Basin. Controlling factors of sedimentary evolution and palaeoclimate changes in Junggar Basin during the Jurassic were discussed based on lithology, fossils and tectonic setting. In the Early to Middle Jurassic, the warm and wide Tethys Sea generated a strong monsoonal circulation over the central Asian continent, and provided adequate moisture for Junggar Basin. Coal-bearing strata of the Badaowan, Sangonghe, and Xishanyao Formations were developed under warm and humid palaeoclimate in Junggar Basin. In the late Middle Jurassic, Junggar Basin was in a semi-humid and semi-arid environment due to global warming event. Stratigraphy in the upper part of the Middle Jurassic with less plant fossils became multicolor or reddish from dark color sediments. During the Late Jurassic, collision of Lhasa and Qiangtang Block obstructed monsoon from the Tethys Sea. A major change in climate from semi-humid and semi-arid to arid conditions took place, and reddish strata of the Upper Jurassic were developed across Junggar Basin.

  18. A New Basal Sauropod Dinosaur from the Middle Jurassic of Niger and the Early Evolution of Sauropoda

    Science.gov (United States)

    Remes, Kristian; Ortega, Francisco; Fierro, Ignacio; Joger, Ulrich; Kosma, Ralf; Marín Ferrer, José Manuel; Ide, Oumarou Amadou; Maga, Abdoulaye

    2009-01-01

    Background The early evolution of sauropod dinosaurs is poorly understood because of a highly incomplete fossil record. New discoveries of Early and Middle Jurassic sauropods have a great potential to lead to a better understanding of early sauropod evolution and to reevaluate the patterns of sauropod diversification. Principal Findings A new sauropod from the Middle Jurassic of Niger, Spinophorosaurus nigerensis n. gen. et sp., is the most complete basal sauropod currently known. The taxon shares many anatomical characters with Middle Jurassic East Asian sauropods, while it is strongly dissimilar to Lower and Middle Jurassic South American and Indian forms. A possible explanation for this pattern is a separation of Laurasian and South Gondwanan Middle Jurassic sauropod faunas by geographic barriers. Integration of phylogenetic analyses and paleogeographic data reveals congruence between early sauropod evolution and hypotheses about Jurassic paleoclimate and phytogeography. Conclusions Spinophorosaurus demonstrates that many putatively derived characters of Middle Jurassic East Asian sauropods are plesiomorphic for eusauropods, while South Gondwanan eusauropods may represent a specialized line. The anatomy of Spinophorosaurus indicates that key innovations in Jurassic sauropod evolution might have taken place in North Africa, an area close to the equator with summer-wet climate at that time. Jurassic climatic zones and phytogeography possibly controlled early sauropod diversification. PMID:19756139

  19. A new basal sauropod dinosaur from the middle Jurassic of Niger and the early evolution of sauropoda.

    Directory of Open Access Journals (Sweden)

    Kristian Remes

    Full Text Available BACKGROUND: The early evolution of sauropod dinosaurs is poorly understood because of a highly incomplete fossil record. New discoveries of Early and Middle Jurassic sauropods have a great potential to lead to a better understanding of early sauropod evolution and to reevaluate the patterns of sauropod diversification. PRINCIPAL FINDINGS: A new sauropod from the Middle Jurassic of Niger, Spinophorosaurus nigerensis n. gen. et sp., is the most complete basal sauropod currently known. The taxon shares many anatomical characters with Middle Jurassic East Asian sauropods, while it is strongly dissimilar to Lower and Middle Jurassic South American and Indian forms. A possible explanation for this pattern is a separation of Laurasian and South Gondwanan Middle Jurassic sauropod faunas by geographic barriers. Integration of phylogenetic analyses and paleogeographic data reveals congruence between early sauropod evolution and hypotheses about Jurassic paleoclimate and phytogeography. CONCLUSIONS: Spinophorosaurus demonstrates that many putatively derived characters of Middle Jurassic East Asian sauropods are plesiomorphic for eusauropods, while South Gondwanan eusauropods may represent a specialized line. The anatomy of Spinophorosaurus indicates that key innovations in Jurassic sauropod evolution might have taken place in North Africa, an area close to the equator with summer-wet climate at that time. Jurassic climatic zones and phytogeography possibly controlled early sauropod diversification.

  20. TMPRSS2-ERG -specific transcriptional modulation is associated with prostate cancer biomarkers and TGF-β signaling

    Directory of Open Access Journals (Sweden)

    Brase Jan C

    2011-12-01

    Full Text Available Abstract Background TMPRSS2-ERG gene fusions occur in about 50% of all prostate cancer cases and represent promising markers for molecular subtyping. Although TMPRSS2-ERG fusion seems to be a critical event in prostate cancer, the precise functional role in cancer development and progression is still unclear. Methods We studied large-scale gene expression profiles in 47 prostate tumor tissue samples and in 48 normal prostate tissue samples taken from the non-suspect area of clinical low-risk tumors using Affymetrix GeneChip Exon 1.0 ST microarrays. Results Comparison of gene expression levels among TMPRSS2-ERG fusion-positive and negative tumors as well as benign samples demonstrated a distinct transcriptional program induced by the gene fusion event. Well-known biomarkers for prostate cancer detection like CRISP3 were found to be associated with the gene fusion status. WNT and TGF-β/BMP signaling pathways were significantly associated with genes upregulated in TMPRSS2-ERG fusion-positive tumors. Conclusions The TMPRSS2-ERG gene fusion results in the modulation of transcriptional patterns and cellular pathways with potential consequences for prostate cancer progression. Well-known biomarkers for prostate cancer detection were found to be associated with the gene fusion. Our results suggest that the fusion status should be considered in retrospective and future studies to assess biomarkers for prostate cancer detection, progression and targeted therapy.

  1. A quantitative proteomics approach identifies ETV6 and IKZF1 as new regulators of an ERG-driven transcriptional network.

    Science.gov (United States)

    Unnikrishnan, Ashwin; Guan, Yi F; Huang, Yizhou; Beck, Dominik; Thoms, Julie A I; Peirs, Sofie; Knezevic, Kathy; Ma, Shiyong; de Walle, Inge V; de Jong, Ineke; Ali, Zara; Zhong, Ling; Raftery, Mark J; Taghon, Tom; Larsson, Jonas; MacKenzie, Karen L; Van Vlierberghe, Pieter; Wong, Jason W H; Pimanda, John E

    2016-12-15

    Aberrant stem cell-like gene regulatory networks are a feature of leukaemogenesis. The ETS-related gene (ERG), an important regulator of normal haematopoiesis, is also highly expressed in T-ALL and acute myeloid leukaemia (AML). However, the transcriptional regulation of ERG in leukaemic cells remains poorly understood. In order to discover transcriptional regulators of ERG, we employed a quantitative mass spectrometry-based method to identify factors binding the 321 bp ERG +85 stem cell enhancer region in MOLT-4 T-ALL and KG-1 AML cells. Using this approach, we identified a number of known binders of the +85 enhancer in leukaemic cells along with previously unknown binders, including ETV6 and IKZF1. We confirmed that ETV6 and IKZF1 were also bound at the +85 enhancer in both leukaemic cells and in healthy human CD34(+) haematopoietic stem and progenitor cells. Knockdown experiments confirmed that ETV6 and IKZF1 are transcriptional regulators not just of ERG, but also of a number of genes regulated by a densely interconnected network of seven transcription factors. At last, we show that ETV6 and IKZF1 expression levels are positively correlated with expression of a number of heptad genes in AML and high expression of all nine genes confers poorer overall prognosis.

  2. Genes encoding chimeras of Neurospora crassa erg-3 and human TM7SF2 proteins fail to complement Neurospora and yeast sterol C-14 reductase mutants

    Indian Academy of Sciences (India)

    A Prakash; Durgadas P Kasbekar

    2002-03-01

    The human gene TM7SF2 encodes a polypeptide (SR-1) with high sequence similarity to sterol C-14 reductase, a key sterol biosynthetic enzyme in fungi, plants and mammals. In Neurospora and yeast this enzyme is encoded by the erg-3 and erg24 genes respectively. In an effort to demonstrate sterol C-14 reductase activity for SR-1 we constructed six recombinant genes coding for chimeras of the Neurospora erg-3 and SR-1 protein sequences and tested them for complementation of the Neurospora erg-3 mutant. To our surprise, all the chimeras failed to complement erg-3. A few of the chimeric proteins were also tested against the yeast erg24 mutant, but again there was no complementation. We discuss some reasons that might account for these unexpected findings.

  3. METHOD OF PROCESSING MONAZITE SAND

    Science.gov (United States)

    Welt, M.A.; Smutz, M.

    1958-08-26

    A process is described for recovering thorium, uranium, and rare earth values from monazite sand. The monazite sand is first digested with sulfuric acid and the resulting "monazite sulfate" solution is adjusted to a pH of between 0.4 and 3.0, and oxalate anions are added causing precipitation of the thorium and the rare earths as the oxalates. The oxalate precipitate is separated from the uranium containing supernatant solution, and is dried and calcined to the oxides. The thorium and rare earth oxides are then dissolved in nitric acid and the solution is contacted with tribntyl phosphate whereby an organic extract phase containing the cerium and thorium values is obtained, together with an aqueous raffinate containing the other rare earth values. The organic phase is then separated from the aqueous raffinate and the cerium and thorium are back extracted with an aqueous medium.

  4. Characterization of sand lenses embedded in tills

    DEFF Research Database (Denmark)

    Kessler, Timo Christian; Klint, K.E.S.; Nilsson, B.

    2012-01-01

    of the various types of sand lenses is discussed, primarily in relation to the depositional and glaciotectonic processes they underwent. Detailed characterization of sand lenses facilitates such interpretations. Finally, the observations are linked to a more general overview of the distribution of sand lenses......Tills dominate large parts of the superficial sediments on the Northern hemisphere. These glacial diamictons are extremely heterogeneous and riddled with fractures and lenses of sand or gravel. The frequency and geometry of sand lenses within tills are strongly linked to glaciodynamic processes...... occurring in various glacial environments. This study specifically focuses on the appearance and spatial distribution of sand lenses in tills. It introduces a methodology on how to measure and characterize sand lenses in the field with regard to size, shape and degree of deformation. A set of geometric...

  5. A compact topology for sand automata

    CERN Document Server

    Dennunzio, Alberto; Masson, Benoît

    2008-01-01

    In this paper, we exhibit a strong relation between the sand automata configuration space and the cellular automata configuration space. This relation induces a compact topology for sand automata, and a new context in which sand automata are homeomorphic to cellular automata acting on a specific subshift. We show that the existing topological results for sand automata, including the Hedlund-like representation theorem, still hold. In this context, we give a characterization of the cellular automata which are sand automata, and study some dynamical behaviors such as equicontinuity. Furthermore, we deal with the nilpotency. We show that the classical definition is not meaningful for sand automata. Then, we introduce a suitable new notion of nilpotency for sand automata. Finally, we prove that this simple dynamical behavior is undecidable.

  6. Rheological Characterization of Green Sand Flow

    DEFF Research Database (Denmark)

    Jabbaribehnam, Mirmasoud; Spangenberg, Jon; Hovad, Emil

    2016-01-01

    The main aim of this paper is to characterize experimentally the flow behaviour of the green sand that is used for casting of sand moulds. After the sand casting process is performed, the sand moulds are used for metal castings. The rheological properties of the green sand is important to quantify...... module for characterizing granular materials. The new module enables viscosity measurements of the green sand as function of the shear rate at different flow rates, i.e. 0, 2, 4, 6, 8, 10, 12 and 15 L/min. The results show generally that the viscosity decreases with both the shear- and flow rate....... In addition, the measurements show that the green sand flow follows a shear-thinning behaviour even after the full fluidization point....

  7. Silo model tests with sand

    DEFF Research Database (Denmark)

    Munch-Andersen, Jørgen

    Tests have been carried out in a large silo model with Leighton Buzzard Sand. Normal pressures and shear stresses have been measured during tests carried out with inlet and outlet geometry. The filling method is a very important parameter for the strength of the mass and thereby the pressures...... as well as the flow pattern during discharge of the silo. During discharge a mixed flow pattern has been identified...

  8. Formation of Craters in Sand

    Directory of Open Access Journals (Sweden)

    Vanissra Boonyaleepun

    2007-06-01

    Full Text Available The diameter of craters formed by spheres of varying mass dropped into sand at low speed was studied. The relationship between the diameter of the crater formed and the kinetic energy of the projectile at impact was found to be of the same general form as that for planetary meteor craters. The relationship is shown to be a power law with exponent 0.17.

  9. Formation of Craters in Sand

    Directory of Open Access Journals (Sweden)

    Vanissra Boonyaleepun

    2007-06-01

    Full Text Available The diameter of craters formed by spheres of varying mass dropped into sand at low speed was studied. The relationship between the diameter of the crater formed and the kinetic energy of the projectile at impact was found to be of the same general form as that for planetary meteor craters. The relationship is shown to be a power law with exponent 0.17

  10. Thermal Properties of oil sand

    Science.gov (United States)

    LEE, Y.; Lee, H.; Kwon, Y.; Kim, J.

    2013-12-01

    Thermal recovery methods such as Cyclic Steam Injection or Steam Assisted Gravity Drainage (SAGD) are the effective methods for producing heavy oil or bitumen. In any thermal recovery methods, thermal properties (e.g., thermal conductivity, thermal diffusivity, and volumetric heat capacity) are closely related to the formation and expansion of steam chamber within a reservoir, which is key factors to control efficiency of thermal recovery. However, thermal properties of heavy oil or bitumen have not been well-studied despite their importance in thermal recovery methods. We measured thermal conductivity, thermal diffusivity, and volumetric heat capacity of 43 oil sand samples from Athabasca, Canada, using a transient thermal property measurement instrument. Thermal conductivity of 43 oil sand samples varies from 0.74 W/mK to 1.57 W/mK with the mean thermal conductivity of 1.09 W/mK. The mean thermal diffusivity is 5.7×10-7 m2/s with the minimum value of 4.2×10-7 m2/s and the maximum value of 8.0×10-7 m2/s. Volumetric heat capacity varies from 1.5×106 J/m3K to 2.11×106 J/m3K with the mean volumetric heat capacity of 1.91×106 J/m3K. In addition, physical and chemical properties (e.g., bitumen content, electric resistivity, porosity, gamma ray and so on) of oil sand samples have been measured by geophysical logging and in the laboratory. We are now proceeding to investigate the relationship between thermal properties and physical/chemical properties of oil sand.

  11. Trafficking-deficient hERG K⁺ channels linked to long QT syndrome are regulated by a microtubule-dependent quality control compartment in the ER.

    Science.gov (United States)

    Smith, Jennifer L; McBride, Christie M; Nataraj, Parvathi S; Bartos, Daniel C; January, Craig T; Delisle, Brian P

    2011-07-01

    The human ether-a-go-go related gene (hERG) encodes the voltage-gated K(+) channel that underlies the rapidly activating delayed-rectifier current in cardiac myocytes. hERG is synthesized in the endoplasmic reticulum (ER) as an "immature" N-linked glycoprotein and is terminally glycosylated in the Golgi apparatus. Most hERG missense mutations linked to long QT syndrome type 2 (LQT2) reduce the terminal glycosylation and functional expression. We tested the hypothesis that a distinct pre-Golgi compartment negatively regulates the trafficking of some LQT2 mutations to the Golgi apparatus. We found that treating cells in nocodazole, a microtubule depolymerizing agent, altered the subcellular localization, functional expression, and glycosylation of the LQT2 mutation G601S-hERG differently from wild-type hERG (WT-hERG). G601S-hERG quickly redistributed to peripheral compartments that partially colocalized with KDEL (Lys-Asp-Glu-Leu) chaperones but not calnexin, Sec31, or the ER golgi intermediate compartment (ERGIC). Treating cells in E-4031, a drug that increases the functional expression of G601S-hERG, prevented the accumulation of G601S-hERG to the peripheral compartments and increased G601S-hERG colocalization with the ERGIC. Coexpressing the temperature-sensitive mutant G protein from vesicular stomatitis virus, a mutant N-linked glycoprotein that is retained in the ER, showed it was not restricted to the same peripheral compartments as G601S-hERG at nonpermissive temperatures. We conclude that the trafficking of G601S-hERG is negatively regulated by a microtubule-dependent compartment within the ER. Identifying mechanisms that prevent the sorting or promote the release of LQT2 channels from this compartment may represent a novel therapeutic strategy for LQT2.

  12. The Oldest Jurassic Dinosaur: A Basal Neotheropod from the Hettangian of Great Britain.

    Science.gov (United States)

    Martill, David M; Vidovic, Steven U; Howells, Cindy; Nudds, John R

    2016-01-01

    Approximately 40% of a skeleton including cranial and postcranial remains representing a new genus and species of basal neotheropod dinosaur is described. It was collected from fallen blocks from a sea cliff that exposes Late Triassic and Early Jurassic marine and quasi marine strata on the south Wales coast near the city of Cardiff. Matrix comparisons indicate that the specimen is from the lithological Jurassic part of the sequence, below the first occurrence of the index ammonite Psiloceras planorbis and above the last occurrence of the Rhaetian conodont Chirodella verecunda. Associated fauna of echinoderms and bivalves indicate that the specimen had drifted out to sea, presumably from the nearby Welsh Massif and associated islands (St David's Archipelago). Its occurrence close to the base of the Blue Lias Formation (Lower Jurassic, Hettangian) makes it the oldest known Jurassic dinosaur and it represents the first dinosaur skeleton from the Jurassic of Wales. A cladistic analysis indicates basal neotheropodan affinities, but the specimen retains plesiomorphic characters which it shares with Tawa and Daemonosaurus.

  13. The Oldest Jurassic Dinosaur: A Basal Neotheropod from the Hettangian of Great Britain.

    Directory of Open Access Journals (Sweden)

    David M Martill

    Full Text Available Approximately 40% of a skeleton including cranial and postcranial remains representing a new genus and species of basal neotheropod dinosaur is described. It was collected from fallen blocks from a sea cliff that exposes Late Triassic and Early Jurassic marine and quasi marine strata on the south Wales coast near the city of Cardiff. Matrix comparisons indicate that the specimen is from the lithological Jurassic part of the sequence, below the first occurrence of the index ammonite Psiloceras planorbis and above the last occurrence of the Rhaetian conodont Chirodella verecunda. Associated fauna of echinoderms and bivalves indicate that the specimen had drifted out to sea, presumably from the nearby Welsh Massif and associated islands (St David's Archipelago. Its occurrence close to the base of the Blue Lias Formation (Lower Jurassic, Hettangian makes it the oldest known Jurassic dinosaur and it represents the first dinosaur skeleton from the Jurassic of Wales. A cladistic analysis indicates basal neotheropodan affinities, but the specimen retains plesiomorphic characters which it shares with Tawa and Daemonosaurus.

  14. Episodic Jurassic to Lower Cretaceous intraplate compression in Central Patagonia during Gondwana breakup

    Science.gov (United States)

    Navarrete, César; Gianni, Guido; Echaurren, Andrés; Kingler, Federico Lince; Folguera, Andrés

    2016-12-01

    From Lower Jurassic to Lower Cretaceous, several intraplate compression events affected discrete sectors of Central Patagonia, under a general context of crustal extension associated with Gondwana breakup. This was demonstrated by means of 2D and 3D seismic and borehole data, which show partial inversion of Lower and Middle Jurassic extensional structures of the Chubut and Cañadón Asfalto basins, during the earliest stages of breakup. A comparison with surrounding areas in Patagonia, where similar Jurassic intraplate compression was described, allowed the discrimination of three discrete pulses of subtle compression (C1: ∼188-185 Ma; C2: ∼170-163; C3: ∼157-136? Ma). Interestingly, episodic intraplate compressional events are closely followed by high flux magmatic events linked to the westward expansion of the Karoo-Ferrar thermal anomaly, which impacted on the lithosphere of southwest Gondwana in Lower Jurassic. In addition, we determined the approximate direction of the main compressive strain (σ1) compatible with other Jurassic intraplate belts of South America. These observations led us to propose a linkage between a thermo mechanically weakened continental crust due to LIPs activity, changes in plate motions and ridge-push forces generated by the opening of the Weddell Sea, in order to explain intraplate shortening, interrupted while Karoo LIPs magmatic invigoration took place.

  15. Palinspastic reconstruction and geological evolution of Jurassic basins in Mongolia and neighboring China

    Directory of Open Access Journals (Sweden)

    Wu Genyao

    2013-07-01

    Full Text Available The important event in Jurassic tectonics in Mongolia was the subduction and closure of the Mongolia-Okhotsk ocean; correspondingly, basin evolution can be divided into two main stages, related to the orogeny and collapse of the orogenic belt, respectively. The developing of Early–Middle Jurassic basins to the north of the ocean resulted from back-arc extension. The fossil sutures, from the China–SE Asia sub-continent to the south of the ocean, were rejuvenated by subduction-related orogeny; in addition, the Yanshanian intra-continental movement occurred. Three Early–Middle Jurassic molasse basins were developed by movement in Inner Mongolia, all of which stretched westwards (or northwards into Mongolia; therefore, the molasse basins in eastern and southern Mongolia had the same geometric and kinematic features as the basins in the Inner Mongolia. Owing to the collapse of the Mongolia-Okhotsk orogenic belt, a group of rift basins developed during the Late Jurassic. In eastern Mongolia, the NE orientated extensional basins were controlled by the neogenic NE-structure. The contemporary basins in southern Mongolia and the neighboring areas in China were constrained by remobilization (inherited activation of the latitudinal or ENE-directional basement structures. Three stages can be recognized in the evolution of the Early–Middle Jurassic basins after reversal; the basins also experienced four episodes of reformation.

  16. The oncofusion protein FUS-ERG targets key hematopoietic regulators and modulates the all-trans retinoic acid signaling pathway in t(16;21) acute myeloid leukemia.

    Science.gov (United States)

    Sotoca, A M; Prange, K H M; Reijnders, B; Mandoli, A; Nguyen, L N; Stunnenberg, H G; Martens, J H A

    2016-04-14

    The ETS transcription factor ERG has been implicated as a major regulator of both normal and aberrant hematopoiesis. In acute myeloid leukemias harboring t(16;21), ERG function is deregulated due to a fusion with FUS/TLS resulting in the expression of a FUS-ERG oncofusion protein. How this oncofusion protein deregulates the normal ERG transcription program is unclear. Here, we show that FUS-ERG acts in the context of a heptad of proteins (ERG, FLI1, GATA2, LYL1, LMO2, RUNX1 and TAL1) central to proper expression of genes involved in maintaining a stem cell hematopoietic phenotype. Moreover, in t(16;21) FUS-ERG co-occupies genomic regions bound by the nuclear receptor heterodimer RXR:RARA inhibiting target gene expression and interfering with hematopoietic differentiation. All-trans retinoic acid treatment of t(16;21) cells as well as FUS-ERG knockdown alleviate the myeloid-differentiation block. Together, the results suggest that FUS-ERG acts as a transcriptional repressor of the retinoic acid signaling pathway.

  17. Early Jurassic allotherians from South Wales (United Kingdom

    Directory of Open Access Journals (Sweden)

    W. A. Clemens

    2007-02-01

    Full Text Available Fossils from two fissure fillings in Pant Quarry (designated Pant 4 and Pant 5, South Wales, United Kingdom, probably of Early Jurassic age document a taxonomically diverse vertebrate fauna, the Morganucodon-sphenodont fauna, composed of several kinds of reptiles, non-mammalian synapsids, and mammals. Six isolated molariform teeth from Pant 4 and 5 fissures clearly record the presence of Thomasia (Mammalia, Allotheria, Haramiyidae, a genus previously known only from purported Late Triassic faunas of southwestern England, France, Belgium, Luxemburg, Germany, and Switzerland. Small morphological differences from teeth in the larger English and continental European samples warrant identification of the Welsh material as Thomasia cf. moorei. The highly derived morphology of an isolated molariform tooth from Pant 5 fissure indicates the presence of another, possibly allotherian, taxon. Fossilien aus zwei wahrscheinlich unterjurassischen Spaltenfüllungen (Pant 4 und Pant 5 im Steinbruch Pant in Süd-Wales dokumentieren eine taxonomisch diverse Wirbeltierfauna. Diese Morganucodon-Sphenodontiden-Fauna besteht aus verschiedenen Formen von Reptilien, Synapsiden und Säugetieren. Sechs isolierte molariforme Zähne aus den Spaltenfüllungen Pant 4 und Pant 5 belegen eindeutig das Vorkommen von Thomasia (Mammalia, Allotheria, Haramiyidae, einer bisher nur aus vermutlich obertriassischen Faunen Südwest-Englands, Frankreichs, Belgiens, Luxemburgs, Deutschlands und der Schweiz bekannten Gattung. Geringe morphologische Unterschiede zu dem umfangreicheren Material aus England und Kontinental-Europa sprechen für die Identifikation des neuen Materials als Thomasia cf. moorei. Die stark abgeleitete Morphologie eines isolierten molariformen Zahnes aus der Spalte Pant 5 belegt das Vorkommen eines anderen Taxons, das möglicherweise auch den Allotheria zuzuordnen ist. doi:10.1002/mmng.200600018

  18. ERG Protein Expression in Diagnostic Specimens Is Associated with Increased Risk of Progression During Active Surveillance for Prostate Cancer

    DEFF Research Database (Denmark)

    Berg, Kasper Drimer; Vainer, Ben; Thomsen, Frederik Birkebæk;

    2014-01-01

    BACKGROUND: Compelling biomarkers identifying prostate cancer patients with a high risk of progression during active surveillance (AS) are needed. OBJECTIVE: To examine the association between ERG expression at diagnosis and the risk of progression during AS. DESIGN, SETTING, AND PARTICIPANTS......: This study included 265 patients followed on AS with prostate-specific antigen (PSA) measurements, clinical examinations, and 10-12 core rebiopsies from 2002 to 2012 in a prospectively maintained database. ERG immunohistochemical staining was performed on diagnostic paraffin-embedded formalin-fixed sections...

  19. Evaluation of Durability Parameters of Concrete with Manufacture Sand and River Sand

    Science.gov (United States)

    Sangoju, Bhaskar; Ramesh, G.; Bharatkumar, B. H.; Ramanjaneyulu, K.

    2017-06-01

    Most of the states in our country have banned sand quarrying from the river beds, causing a scarcity of natural river sand for the construction sector. Manufacture sand (M-sand) is one of the alternate solutions to replace the river sand (R-sand) in concrete. The main aim of the present study is to evaluate the durability parameters of concrete with M-sand when compared to that of concrete with R-sand. Corrosion of reinforcement is one of the main deteriorating mechanisms of reinforced concrete due to the ingress of chloride ions or carbon-di-oxide. For comparative evaluation of durability parameters, accelerated tests such as Rapid Chloride Permeability Test, Rapid Chloride Migration Test and accelerated carbonation test were carried out on specimens of R-sand and M-sand. All tests were carried out after 90 days of casting. Test results reveal that the durability parameters of the concrete with M-sand in chloride induced environment is relatively better than that of concrete with R-sand and hence is recommended to use M-sand as a replacement to R-sand.

  20. Sand deposit-detecting method and its application in model test of sand flow

    Institute of Scientific and Technical Information of China (English)

    黎伟; 房营光; 莫海鸿; 谷任国; 陈俊生

    2013-01-01

    Against the background of the sand-flow foundation treatment engineering of Guangzhou Zhoutouzui variable cross-section immersed tunnel, a kind of sand deposit-detecting method was devised on the basis of full-scale model test of sand-flow method. The real-time data of sand-deposit height and radius were obtained by the self-developed sand-deposit detectors. The test results show that the detecting method is simple and has high precision. In the use of sand-flow method, the sand-carrying capability of fluid is limited, and sand particles are all transported to the sand-deposit periphery through crater, gap and chutes after the sand deposit formed. The diffusion range of the particles outside the sand-deposit does not exceed 2.0 m. Severe sorting of sand particles is not observed because of the unique oblique-layered depositing process. The temporal and spatial distributions of gap and chutes directly affect the sand-deposit expansion, and the expansion trend of the average sand-deposit radius accords with quadratic time-history curve.

  1. Monte Carlo method for predicting of cardiac toxicity: hERG blocker compounds.

    Science.gov (United States)

    Gobbi, Marco; Beeg, Marten; Toropova, Mariya A; Toropov, Andrey A; Salmona, Mario

    2016-05-27

    The estimation of the cardiotoxicity of compounds is an important task for the drug discovery as well as for the risk assessment in ecological aspect. The experimental estimation of the above endpoint is complex and expensive. Hence, the theoretical computational methods are very attractive alternative of the direct experiment. A model for cardiac toxicity of 400 hERG blocker compounds (pIC50) is built up using the Monte Carlo method. Three different splits into the visible training set (in fact, the training set plus the calibration set) and invisible validation sets examined. The predictive potential is very good for all examined splits. The statistical characteristics for the external validation set are (i) the coefficient of determination r(2)=(0.90-0.93); and (ii) root-mean squared error s=(0.30-0.40). Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

  2. The Jurassic of Denmark and Greenland: Early and Middle Jurassic mires of Bornholm and the Fennoscandian Border Zone: a comparison of depositional environments and vegetation

    Directory of Open Access Journals (Sweden)

    Koppelhus, Eva B.

    2003-10-01

    Full Text Available Suitable climatic conditions for peat formation existed during Early–Middle Jurassic times in the Fennoscandian Border Zone. Autochthonous peat and allochthonous organic matter were depositedfrom north Jylland, south-east through the Kattegat and Øresund area, to Skåne and Bornholm. The increase in coal seam abundance and thickness from north Jylland to Bornholm indicates that the most favourable peat-forming conditions were present towards the south-east. Peat formation and deposition of organic-rich muds in the Early Jurassic coastal mires were mainly controlled by a continuous rise of relative sea level governed by subsidence and an overall eustatic rise. Watertable rise repeatedly outpaced the rate of accumulation of organic matter and terminated peat formationby lacustrine or lagoonal flooding. Organic matter accumulated in open-water mires and in continuously waterlogged, anoxic and periodically marine-influenced mires. The latter conditionsresulted in huminite-rich coals containing framboidal pyrite. The investigated Lower Jurassic seams correspond to peat and peaty mud deposits that ranged from 0.5–5.7 m in thickness, but were generallyless than 3 m thick. It is estimated that on Bornholm, the mires existed on average for c. 1200 years in the Hettangian–Sinemurian and for c. 2300 years in the Late Pliensbachian; the Early Jurassic(Hettangian–Sinemurian mires in the Øresund area existed for c. 1850 years. Aalenian uplift of the Ringkøbing–Fyn High and major parts of the Danish Basin caused a significant change in the basinconfiguration and much reduced subsidence in the Fennoscandian Border Zone during the Middle Jurassic. This resulted in a more inland position for the Middle Jurassic mires which on occasionenabled peat accumulation to keep pace with, or temporarily outpace, watertable rise. Thus, peat formation was sometimes sustained for relatively long periods, and the mires may have existed for up to 7000 years in the

  3. MicroRNA-224 targets ERG2 and contributes to malignant progressions of meningioma.

    Science.gov (United States)

    Wang, Maomao; Deng, Xiaodong; Ying, Qi; Jin, Tingyan; Li, Ming; Liang, Chong

    2015-05-01

    MicroRNA-224 is overexpressed in various malignant tumors with poor prognosis, which plays a critical role in biological processes including cell proliferation, apoptosis and several developmental and physiological progressions. However, the potential association between miR-224 and clinical outcome in patients with meningiomas remains unknown. Here, we investigate miR-224 expression and biological functions in meningiomas. MiR-224 expression was measured by Northern blot analysis and quantitative reverse transcription-polymerase chain reaction (qRT-PCR) in meningioma and normal brain tissues. Kaplan-Meier analysis and Cox regression analysis were used to exam its correlation with clinicopathological features and prognostic value. The biological effects of miR-224 on the cell proliferation and apoptosis in meningioma cells were examined by MTT assay and apoptosis assay. We found the expression levels of miR-224 were significantly higher in meningioma tissues than that in normal brain, positively correlated with advanced pathological grade. Kaplan-Meier analysis indicated that meningioma patients with low miR-224 expression exhibited significantly prolonged overall and recurrence-free survival. Furthermore, we demonstrated that ERG2 was an identical candidate target gene of MiR-224 in vitro. Our results indicated that downregulation of miR-224 suppressed cell growth and resulted in the enhancement of cell apoptosis through activation of the ERG2-BAK-induced apoptosis pathway. Our findings imply the miR-224 expression could predict the overall survival and recurrence-free survival of patients with meningioma and it might be a promising therapeutic target for treating malignant meningiomas.

  4. The First Stegosaur (Dinosauria, Ornithischia) from the Upper Jurassic Shishugou Formation of Xinjiang, China

    Institute of Scientific and Technical Information of China (English)

    JIA Chengkai; Catherine A. FOSTER; XU Xing; James M. CLARK

    2007-01-01

    A new stegosaur species, Jiangjunosaurus junggarensis, gen. et sp. nov., is erected based on a specimen collected from the Upper Jurassic upper section of the Shishugou Formation in the Junggar Basin, Xinjiang, China. It represents the first stegosaur from the Jurassic of Xinjiang and increases the diversity of the dinosaur fauna in the Shishugou Formation. The new genus is characterized by symmetrical and proportionally wide tooth crowns, a sub-rectangular axial neural spine seen in lateral view, and large openings on the lateral surfaces of the cervical centra. A preliminary character analysis suggests that this new taxon is more derived than the Middle Jurassic stegosaur Huayangosaurus but more primitive than most other known stegosaur species.

  5. A New Sauropod, Gongxianosaurus, from the Lower Jurassic of Sichuan, China

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    The paper describes an early and primitive sauropod dinosaur, Gongxianosaurus shibeiensis (gen. et sp. nov.), from the Dongyuemiao Member of the Lower Jurassic Ziliujing Formation in Shibei Township, Gongxian County, Sichuan Province, China, which is one of the 5 dinosaur fossils discovered in Gongxian in 1997. Except the skull which is incomplete, the fossils are well preserved. It has some features of both sauropods and prosauropods. It is an intermediate type in the evolution of dinosaurs from prosauropods to sauropods and provides materials for the study of the origin and evolution of the sauropod dinosaur fauna. The discovery of this new sauropod furnishes a way for the stratigraphic correlation between the Early Jurassic Ziliujing Formation in the Sichuan basin and the Lower Jurassic Lufeng Formation in the Central Yunnan basin.

  6. Three new species of mesosciophilid gnats from the Middle-Late Jurassic of China (insecta: Diptera: Nematocera: Mesosciophilidae).

    Science.gov (United States)

    Zhang, J F

    2008-11-15

    Three extinct new species from the Callovian or Oxfordian (uppermost Middle Jurassic or lowermost Upper Jurassic) Daohugou beds in Inner Mongolia, China is described as Mesosciophila abstracta sp. n., Mesosciophilodes synchrona sp. n. and Paramesosciophilodes eximia sp. n. (Family Mesosciophilidae). All the records of mesosciophilid gnats are briefly reviewed.

  7. First American record of the Jurassic ichnogenus Deltapodus and a review of the fossil record of stegosaurian footprints

    DEFF Research Database (Denmark)

    Milàn, Jesper; Chiappe, Luis M

    2009-01-01

    of a well-preserved pes track and the eroded remains of a manus track. Previously, Deltapodus was known only from the Middle Jurassic Yorkshire coast of England and the Upper Jurassic of Portugal and Spain. The new discovery thus substantially extends the geographic record of this ichnospecies...

  8. SAND

    DEFF Research Database (Denmark)

    Thorsen, Grete

    Der er udført et konsolideringsforsøg med bakkesand fra Lunds grusgrav, Lund no. O. forsøget er udført i samme konsolideringsapparat, som er anvendt til måling af deformationsegenskaberne af mange forskellige danske jordarter. Forsøgsresultaterne er søgt tolket som ved forsøg med andre jordarter....

  9. Critical review of research on the Lower Jurassic flora of Poland

    Directory of Open Access Journals (Sweden)

    Pacyna Grzegorz

    2013-12-01

    Full Text Available The Lower Jurassic plant macrofossils of Poland are poorly known. Relatively rich sources of fossils are found in only a few outcrops in the Holy Cross Mountains. Other described plant remains come from drill cores taken from most areas of Poland, but as a rule these are single specimens. The only professional descriptions of Lower Jurassic macroflora are papers by Raciborski, Makarewiczówna, and a team of researchers consisting of Reymanówna, Barbacka, Ziaja, and Wcisło-Luraniec. Raciborski’s fossil collection is still available for research and revision. Such work is in progress. The collection described by Makarewiczówna contained many interesting specimens but unfortunately the majority of them are now missing. Stratigraphic research by geologists has provided some new specimens from drill cores and outcrops in the Holy Cross Mountains but these have not been subjected to detailed palaeobotanical analysis. The palynology of the Lower Jurassic was focused on biostratigraphy from the outset of that research. As an outcome it provided spore-pollen and megaspore zonations for Lower Jurassic strata in Poland. The Polish Lower Jurassic flora is comprised of ferns (very numerous, lycopsids, sphenopsids, cycadaleans, bennettitaleans, gnetaleans, ginkgoaleans, and conifers. This flora is taxonomically poorer than the equally old and geographically close floras of Denmark, Sweden, and Germany. Macrofloristic data have been used by geologists as an important source of information for assessing the age of Lower Jurassic formations, particularly in the Holy Cross Mountains. Hence the need for the old collections to be taxonomically revised and for new material from outcrops and drill cores to be examined and described.

  10. Mutation analysis of ERG 11 gene in Candida albicans isolates from patients with acquired immunodeficiency syndrome (AIDS)%艾滋病患者白念珠菌ERG11基因突变的研究

    Institute of Scientific and Technical Information of China (English)

    王丽; 惠艳; 张丽娟; 张巧巧; 邓淑文; 帕丽达·阿布利孜; 王慧

    2012-01-01

    目的 探讨艾滋病患者的白念珠菌唑类耐药株中唑类抗真菌药物(氟康唑、伊曲康唑、伏立康唑)的作用靶位基因ERG 11基因突变与耐药的关系.方法 用PCR对临床分离的93株白念珠菌的Erg11基因进行扩增、测序,DNAman软件将测序结果与基因库中的X13296进行比对,将突变碱基翻译为氨基酸,确定是否发生错义突变.结果 共检出40个碱基突变位点,包括27个同义突变位点和13个错义突变位点.耐一种药物的突变菌株中每株菌只发生一处错义突变或无错义突变,而耐二种或三种药物的菌株中每株菌还可以同时出现两处或三处错义突变.结论 ERG 11基因错义突变与白念珠菌耐药有关.%Objective To investigate the relationship between the mutation of ERG11 gene,a target of azole antifungal drugs (fluconazole,itraconazole,voriconazole),and azole-resistance in Candida albicans isolates from patients with AIDS.Methods Ninety-three Candida albicans strains were isolated from patients with AIDS.DNA was extracted from these isolates,and ERG11 gene was amplified by PCR followed by bidirectional sequencing.DNAman software was used to compare the resultant sequence with the reference sequence of ERG11 gene (GenBank accession no.X13296).Then,different base sequences were translated into amino acid sequences to determine whether missense mutations occured.Results A total of 40 mutation sites were identified in these isolates,including 27 silent mutations and 13 missense mutations.One or no missense mutation was detected in Candida albicans strains resistant to 1 antifungal agent,while those resistant to 2 or 3 antifungal agents simultaneously harbored 2 or 3 missense mutations.Conclusion The missense mutations in ERG11 gene are probably connected with azole resistance in Candida albicans.

  11. Cysteine-rich secretory protein-3 (CRISP3 is strongly up-regulated in prostate carcinomas with the TMPRSS2-ERG fusion gene.

    Directory of Open Access Journals (Sweden)

    Franclim R Ribeiro

    Full Text Available A large percentage of prostate cancers harbor TMPRSS2-ERG gene fusions, leading to aberrant overexpression of the transcription factor ERG. The target genes deregulated by this rearrangement, however, remain mostly unknown. To address this subject we performed genome-wide mRNA expression analysis on 6 non-malignant prostate samples and 24 prostate carcinomas with (n = 16 and without (n = 8 TMPRSS2-ERG fusion as determined by FISH. The top-most differentially expressed genes and their associations with ERG over-expression were technically validated by quantitative real-time PCR and biologically validated in an independent series of 200 prostate carcinomas. Several genes encoding metabolic enzymes or extracellular/transmembrane proteins involved in cell adhesion, matrix remodeling and signal transduction pathways were found to be co-expressed with ERG. Within those significantly over-expressed in fusion-positive carcinomas, CRISP3 showed more than a 50-fold increase when compared to fusion-negative carcinomas, whose expression levels were in turn similar to that of non-malignant samples. In the independent validation series, ERG and CRISP3 mRNA levels were strongly correlated (r(s = 0.65, p<0.001 and both were associated with pT3 disease staging. Furthermore, immunohistochemistry results showed CRISP3 protein overexpression in 63% of the carcinomas and chromatin immunoprecipitation with an anti-ERG antibody showed that CRISP3 is a direct target of the transcription factor ERG. We conclude that ERG rearrangement is associated with significant expression alterations in genes involved in critical cellular pathways that define a subset of locally advanced PCa. In particular, we show that CRISP3 is a direct target of ERG that is strongly overexpressed in PCa with the TMPRSS2-ERG fusion gene.

  12. A basal alvarezsauroid theropod from the early Late Jurassic of Xinjiang, China.

    Science.gov (United States)

    Choiniere, Jonah N; Xu, Xing; Clark, James M; Forster, Catherine A; Guo, Yu; Han, Fenglu

    2010-01-29

    The fossil record of Jurassic theropod dinosaurs closely related to birds remains poor. A new theropod from the earliest Late Jurassic of western China represents the earliest diverging member of the enigmatic theropod group Alvarezsauroidea and confirms that this group is a basal member of Maniraptora, the clade containing birds and their closest theropod relatives. It extends the fossil record of Alvarezsauroidea by 63 million years and provides evidence for maniraptorans earlier in the fossil record than Archaeopteryx. The new taxon confirms extreme morphological convergence between birds and derived alvarezsauroids and illuminates incipient stages of the highly modified alvarezsaurid forelimb.

  13. Jurassic Lake T'oo'dichi': a large alkaline, saline lake, Morrison Formation, eastern Colorado Plateau

    Science.gov (United States)

    Turner, C.E.; Fishman, N.S.

    1991-01-01

    Recognition of alkaline, saline-lake deposits in the Morrison Formation significantly alters interpretations of depositional environments of this formation, and it also has important implications for paleoclimatic interpretation. Late Jurassic climate was apparently much more arid than had previously been thought. In fact, sedimentologic evidence suggests that the lake basin was typically dry for extended periods and enjoyed only brief wet intervals. This conclusion has important consequences for environmental interpretation of the habitat that was favorable for large herbivorous dinosaurs, which thrived in the Late Jurassic. -from Authors

  14. Androecium of Archaefructus, the Late Jurassic Angiosperms from Western Liaoning, China

    Institute of Scientific and Technical Information of China (English)

    SUN Ge; ZHENG Shaolin; SUN Chunlin; SUN Yuewu; David L. DILCHER; MIAO Yuyan

    2002-01-01

    Androecium of the earliest known flowering plant Archaefructus liaoningensis was found from the Upper Jurassic Jianshangou Formation of western Liaoning, China. The androecium consists of numerous stamens bearing in pair on the reproductive axes below conduplicate carpels. The stamens are composed of a short filament and basifixed anther for each. Monosulcate pollen in situ are found from the anthers. The characters of the androecium reveals that Archaefructus are probably protandrous, and the paired stamens and monosulcate pollen appear to indicate that Archaefructus, as primitive angiosperms,might be derived from extinct seed -ferns during the Older Mesozoic. Archaefructus is considered Late Jurassic in age.

  15. Early and Middle Jurassic climate changes: implications for palaeoceanography and tectonics

    DEFF Research Database (Denmark)

    Korte, Christoph; Hesselbo, Stephen; Ullmann, Clemens Vinzenz;

    2014-01-01

    three pronounced oxygen isotope ‘Ice Age’ cycles, and the subsequent well known Toarcian Oceanic Anoxic ‘supergreenhouse’ Event is followed by very warm seawater temperatures in the late Toarcian. Moreover, a very pronounced and effective cooling occurred during the latest Toarcian and early Aalenian...... (Early-Middle Jurassic Boundary Event) resulted in substantial expansion of Arctic climates to palaeolatitudes as low as 45° and in distinctly cooler seawater temperatures in lower latitude European seas. At least the extensive cooling at the Early-Middle Jurassic Boundary Event was most likely driven...

  16. Earliest evolution of multituberculate mammals revealed by a new Jurassic fossil.

    Science.gov (United States)

    Yuan, Chong-Xi; Ji, Qiang; Meng, Qing-Jin; Tabrum, Alan R; Luo, Zhe-Xi

    2013-08-16

    Multituberculates were successful herbivorous mammals and were more diverse and numerically abundant than any other mammal groups in Mesozoic ecosystems. The clade also developed diverse locomotor adaptations in the Cretaceous and Paleogene. We report a new fossil skeleton from the Late Jurassic of China that belongs to the basalmost multituberculate family. Dental features of this new Jurassic multituberculate show omnivorous adaptation, and its well-preserved skeleton sheds light on ancestral skeletal features of all multituberculates, especially the highly mobile joints of the ankle, crucial for later evolutionary success of multituberculates in the Cretaceous and Paleogene.

  17. Liquefaction of Sand under Low Confining Pressure

    Institute of Scientific and Technical Information of China (English)

    YANG Shaoli; Rolf Sandven; Lars Grande

    2003-01-01

    Undrained behaviour of sand under low cell pressure was studied in static and cyclic triaxial tests. It was found that very loose sand liquefies under static loading with the relative density being a key parameter for the undrained behaviour of sand. In cyclic triaxial tests, pore water pressures built up during the cyclic loading and exceeded the confining cell pressure. This process was accompanied by a large sudden increase in axial deformation. The necessary number of cycles to obtain liquefaction was related to the confining cell pressure, the amplitude of cyclic loading and the relative density of sand.In addition, the patterns of pore water pressure response are different from those of sand samples with different relative densities. The test results are very useful for expounding scour mechanism around coastal structures since they relate to the low stress behaviour of the sand.

  18. Creep Behavior of Frozen Sand.

    Science.gov (United States)

    1981-06-01

    temperature and stress range. There was a 2strong stress dependance to S (r =0.95) for saturated Manchester Fine Sand which does not agree with RPT. The...Curves at High Stress 161 Ratio D/Du = 0.505 for Frozen HF’S at w=10% IV-20 Minimum Strain Rate Dependance on Stress 162 Ratio for Frozen MFS IV-21 Minimum...Strain Rate Dependance on Relative 163 Density for Frozen MFS IV-22 Temperature Stage Test on Frozen Saturated 164 MFS under a Load of D=9.24MPa Fig

  19. hERG Channel Inhibitory Daphnane Diterpenoid Orthoesters and Polycephalones A and B with Unprecedented Skeletons from Gnidia polycephala.

    Science.gov (United States)

    De Mieri, Maria; Du, Kun; Neuburger, Markus; Saxena, Priyanka; Zietsman, Pieter C; Hering, Steffen; van der Westhuizen, Jan H; Hamburger, Matthias

    2015-07-24

    The hERG channel is an important antitarget in safety pharmacology. Several drugs have been withdrawn from the market or received severe usage restrictions because of hERG-related cardiotoxicity. In a screening of medicinal plants for hERG channel inhibition using a two-microelectrode voltage clamp assay with Xenopus laevis oocytes, a dichloromethane extract of the roots of Gnidia polycephala reduced the peak tail hERG current by 58.8 ± 13.4% (n = 3) at a concentration of 100 μg/mL. By means of HPLC-based activity profiling daphnane-type diterpenoid orthoesters (DDOs) 1, 4, and 5 were identified as the active compounds [55.4 ± 7.0% (n = 4), 42.5 ± 16.0% (n = 3), and 51.3 ± 9.4% (n = 4), respectively, at 100 μM]. In a detailed phytochemical profiling of the active extract, 16 compounds were isolated and characterized, including two 2-phenylpyranones (15 and 16) with an unprecedented tetrahydro-4H-5,8-epoxypyrano[2,3-d]oxepin-4-one skeleton, two new DDOs (3 and 4), two new guaiane sesquiterpenoids (11 and 12), and 10 known compounds (1, 2, 5-10, 13, and 14). Structure elucidation was achieved by extensive spectroscopic analysis (1D and 2D NMR, HRMS, and electronic circular dichroism), computational methods, and X-ray crystallography.

  20. Detection of early functional changes in diabetic retina using slow double-stimulation mfERG paradigm.

    Science.gov (United States)

    Chan, Henry Ho-lung; Chu, Patrick Ho-wai; Lung, Jenny Chun-yee; Ho, Wing-cheung; Ting, Patrick Wai-ki; Sum, Rita Wing-man; Ng, Yiu-fai

    2011-11-01

    Aim Diabetes mellitus (DM) is a systemic disease with insufficient secretion of insulin or poor response to insulin. This typically causes poor control of blood glucose level leading to a range of complications. Early detection of the retinal function alteration in DM is needed. Methods A newly modified paradigm-slow double-stimulation multifocal electroretinogram (mfERG)-was introduced to measure early changes of retinal function in DM and to investigate changes in the adaptation mechanisms in the diabetic retina. The mfERG was measured by using a slow double-stimulation mfERG paradigm (M(1)M(2)OOO). Results The m1 amplitude of M(1) stimulation from diabetic subjects was significantly reduced in ring 1 in contrast to that of a control group. The m2 amplitude of M(2) stimulation from diabetic subjects was also significantly reduced in ring 1 and 2 as compared with those of the control group. The m1/m2 ratio which minimises intersubject variation shows a reasonable differentiation between the control and diabetic groups. There was a significant increase in the amplitude ratio from diabetic subjects in ring 2 and 3 as compared with those of the control group. Conclusions The present findings suggest that the new mfERG paradigm is a fast and sensitive test for the detection of early functional changes in the diabetic retina.

  1. High-Level γ-Glutamyl-Hydrolase (GGH) Expression is Linked to Poor Prognosis in ERG Negative Prostate Cancer

    Science.gov (United States)

    Melling, Nathaniel; Rashed, Masoud; Schroeder, Cornelia; Hube-Magg, Claudia; Kluth, Martina; Lang, Dagmar; Simon, Ronald; Möller-Koop, Christina; Steurer, Stefan; Sauter, Guido; Jacobsen, Frank; Büscheck, Franziska; Wittmer, Corinna; Clauditz, Till; Krech, Till; Tsourlakis, Maria Christina; Minner, Sarah; Huland, Hartwig; Graefen, Markus; Budäus, Lars; Thederan, Imke; Salomon, Georg; Schlomm, Thorsten; Wilczak, Waldemar

    2017-01-01

    γ-glutamyl-hydrolase (GGH) is a ubiquitously-expressed enzyme that regulates intracellular folate metabolism for cell proliferation, DNA synthesis, and repair. Employing GGH immunohistochemistry on a tissue microarray with 12,427 prostate cancers, we found that GGH expression was negative to low in normal prostate epithelium, whereas 88.3% of our 10,562 interpretable cancers showed GGH expression. GGH staining was considered as low intensity in 49.6% and as high intensity in 38.6% of cancers. High GGH expression was linked to the TMPRSS2:ERG-fusion positive subset of cancers (p < 0.0001), advanced pathological tumor stage, and high Gleason grade (p < 0.0001 each). Further analysis revealed that these associations were merely driven by the subset of ERG-negative cancers, High GGH expression was weakly linked to early biochemical recurrence in ERG negative cancers (p < 0.0001) and independent from established histo-pathological parameters. Moreover, GGH expression was linked to features of genetic instability, including presence of recurrent deletions at 3p, 5q, 6q, and 10q (PTEN, p ≤ 0.01 each), as well as to accelerated cell proliferation as measured by Ki67 immunohistochemistry (p < 0.0001). In conclusion, the results of our study identify GGH as an ERG subtype specific molecular marker with modest prognostic relevance, which may have clinical relevance if analyzed in combination with other molecular markers. PMID:28146062

  2. Overexpression of erg1 gene in Trichoderma harzianum CECT 2413: effect on the induction of tomato defence-related genes.

    Science.gov (United States)

    Cardoza, R E; Malmierca, M G; Gutiérrez, S

    2014-09-01

    To investigate the effect of the overexpression of erg1 gene of Trichoderma harzianum CECT 2413 (T34) on the Trichoderma-plant interactions and in the biocontrol ability of this fungus. Transformants of T34 strain overexpressing erg1 gene did not show effect on the ergosterol level, although a drastic decrease in the squalene level was observed in the transformants at 96 h of growth. During interaction with plants, the erg1 overexpression resulted in a reduction of the priming ability of several tomato defence-related genes belonging to the salicylate pathway, and also of the TomLoxA gene, which is related to the jasmonate pathway. Interestingly, other jasmonate-related genes, such as PINI and PINII, were slightly induced. The erg1 overexpressed transformants also showed a reduced ability to colonize tomato roots. The ergosterol biosynthetic pathway might play an important role in regulating Trichoderma-plant interactions, although this role does not seem to be restricted to the final product; instead, other intermediates such as squalene, whose role in the Trichoderma-plant interaction has not been characterized, would also play an important role. The functional analysis of genes involved in the synthesis of ergosterol could provide additional strategies to improve the ability of biocontrol of the Trichoderma strains and their interaction with plants. © 2014 The Society for Applied Microbiology.

  3. hERG (KCNH2 or Kv11.1) K+ channels: screening for cardiac arrhythmia risk.

    Science.gov (United States)

    Bowlby, Mark R; Peri, Ravi; Zhang, Howard; Dunlop, John

    2008-11-01

    Testing new compounds for pro-arrhythmic potential has focused in recent years on avoiding activity at the hERG K+ channel, as hERG block is a common feature of many pro-arrhythmic compounds associated with Torsades de Pointes in humans. Blockers of hERG are well known to prolong cardiac action potentials and lead to long QT syndrome, and activators, although rarer, can lead to short QT syndrome. The most reliable assays of hERG utilize stable cell lines, and include ligand binding, Rb+ flux and electrophysiology (both automated and manual). These assays can be followed by measurement of activity at other ion channels contributing to cardiac contractility and detailed action potential/repolarization measurements in cardiac tissue. An integrated risk assessment for pro-arrhythmic potential is ultimately required, as the constellation of ion channel activities and potencies, along with the mechanism/kinetics of ion channel block, may ultimately be the best predictor of cardiac risk in vivo.

  4. Proline Scan of the hERG Channel S6 Helix Reveals the Location of the Intracellular Pore Gate

    Science.gov (United States)

    Thouta, Samrat; Sokolov, Stanislav; Abe, Yuki; Clark, Sheldon J.; Cheng, Yen M.; Claydon, Tom W.

    2014-01-01

    In Shaker-like channels, the activation gate is formed at the bundle crossing by the convergence of the inner S6 helices near a conserved proline-valine-proline motif, which introduces a kink that allows for electromechanical coupling with voltage sensor motions via the S4-S5 linker. Human ether-a-go-go-related gene (hERG) channels lack the proline-valine-proline motif and the location of the intracellular pore gate and how it is coupled to S4 movement is less clear. Here, we show that proline substitutions within the S6 of hERG perturbed pore gate closure, trapping channels in the open state. Performing a proline scan of the inner S6 helix, from Ile655 to Tyr667 revealed that gate perturbation occurred with proximal (I655P-Q664P), but not distal (R665P-Y667P) substitutions, suggesting that Gln664 marks the position of the intracellular gate in hERG channels. Using voltage-clamp fluorimetry and gating current analysis, we demonstrate that proline substitutions trap the activation gate open by disrupting the coupling between the voltage-sensing unit and the pore of the channel. We characterize voltage sensor movement in one such trapped-open mutant channel and demonstrate the kinetics of what we interpret to be intrinsic hERG voltage sensor movement. PMID:24606930

  5. hERG classification model based on a combination of support vector machine method and GRIND descriptors

    DEFF Research Database (Denmark)

    Li, Qiyuan; Jorgensen, Flemming Steen; Oprea, Tudor

    2008-01-01

    invest substantial effort in the assessment of cardiac toxicity of drugs. The development of in silico tools to filter out potential hERG channel inhibitors in earlystages of the drug discovery process is of considerable interest. Here, we describe binary classification models based on a large...

  6. An extended 15 Hz ERG protocol (2): data of normal subjects and patients with achromatopsia, CSNB1, and CSNB2

    NARCIS (Netherlands)

    Bijveld, M.M.C.; Riemslag, F.C.C.; Kappers, A.M.L.; Hoeben, F.P.; van Genderen, M.M.

    2011-01-01

    The amplitude versus flash strength curve of 15 Hz electroretinograms (ERGs) shows two minima. The minima are caused by interactions between the primary and the secondary rod pathways (first minimum), and the secondary rod pathway and the cone-driven pathway (second minimum). Furthermore, cone pathw

  7. Molecular Characterization and Clinical Impact of TMPRSS2-ERG Rearrangement on Prostate Cancer: Comparison between FISH and RT-PCR

    Directory of Open Access Journals (Sweden)

    A. Fernández-Serra

    2013-01-01

    Full Text Available Prostate cancer (PCa is a very heterogeneous disease, and there are constraints in its current diagnosis. Serum PSA levels, digital rectal examination (DRE, and histopathologic analysis often drive to overdiagnosis and overtreatment. Since 2005, the presence of the genetic rearrangement between transmembrane-serine protease gene (TMPRSS2 and the erythroblast transformation-specific (ETS member ERG (v-ets erythroblastosis virus E26 oncogene homolog avian has been demonstrated in almost half of PCa cases. Both FISH and RT-PCR are useful tools for detecting these rearrangements, but very few comparatives between both techniques have been published. In this study, we included FFPE tumors from 294 PCa patients treated with radical prostatectomy with more than 5 years of followup. We constructed a total of 20 tissue microarrays in order to perform break-apart and tricolor probe FISH approaches that were compared with RT-PCR, showing a concordance of 80.6% (P<0.001. The presence of TMPRSS2-ERG rearrangement was observed in 56.6% of cases. No association between TMPRSS2-ERG status and clinicopathological parameters nor biochemical progression and clinical progression free survival was found. In conclusion, this study demonstrates that both FISH and RT-PCR are useful tools in the assessment of the TMPRSS2-ERG fusion gene status in PCa patients and that this genetic feature per se lacks prognostic value.

  8. Draft Genome Sequence of MCPA-Degrading Sphingomonas sp. Strain ERG5, Isolated from a Groundwater Aquifer in Denmark

    DEFF Research Database (Denmark)

    Nielsen, Tue Kjærgaard; Kot, Witold; Sørensen, Sebastian R

    2015-01-01

    Sphingomonas sp. strain ERG5 was isolated from a bacterial community, originating from a groundwater aquifer polluted with low pesticide concentrations. This bacterium degrades 2-methyl-4-chlorophenoxyacetic acid (MCPA) in a wide spectrum of concentrations and has been shown to function in bioaug...

  9. Comparison of conventional ERG parameters and high-intensity A-wave analysis in a clinical setting.

    Science.gov (United States)

    Marmor, Michael F; Serrato, Alexandra; Tzekov, Radouil

    2003-05-01

    Computational analysis of high-intensity a-waves yields direct information about the rod and cone receptor potential. However, it is not clear whether such information adds materially to the diagnostic value of the standard ERG in a routine clinical setting. We recorded both conventional ISCEV standard and computational high intensity ERG parameters from 38 patients referred to a clinical laboratory for ERG testing, and also from eight normal volunteers. The patients were grouped as: (1) macular dysfunction; (2) diffuse cone dysfunction; (3) diffuse rod-cone dysfunction. The results showed moderate variation in both conventional and computational parameters, but in general a similar pattern of normality or abnormality for both among the disease groups. There were only a few outlying subjects for which one or the other approach seemed more sensitive. We conclude that a-wave analysis is an important tool for clinical research and the study of special patients, but adding it to the standard ERG protocol does not, at our present state of knowledge, add markedly to clinical evaluations in a routine clinical setting.

  10. The palaeogeography of Sundaland and Wallacea since the Late Jurassic

    Directory of Open Access Journals (Sweden)

    Robert Hall

    2013-08-01

    Full Text Available The continental core of Southeast (SE Asia, Sundaland, was assembled from Gondwana fragments by the Early Mesozoic. Continental blocks rifted from Australia in the Jurassic [South West (SW Borneo, East Java-West Sulawesi-Sumba], and the Woyla intraoceanic arc of Sumatra, were added to Sundaland in the Cretaceous. These fragments probably included emergent areas and could have carried a terrestrial flora and fauna. Sarawak, the offshore Luconia-Dangerous Grounds areas, and Palawan include Asian continental material. These probably represent a wide accretionary zone at the Asia-Pacific boundary, which was an active continental margin until the mid Cretaceous. Subduction ceased around Sundaland in the Late Cretaceous, and from about 80 Ma most of Sundaland was emergent, physically connected to Asia, but separated by deep oceans from India and Australia. India moved rapidly north during the Late Cretaceous and Early Cenozoic but there is no evidence that it made contact with SE Asia prior to collision with Asia. One or more arc-India collisions during the Eocene may have preceded India-Asia collision. The arcs could have provided dispersal pathways from India into SE Asia before final suturing of the two continents. During the Late Cretaceous and Early Cenozoic there was no significant subduction beneath Sumatra, Java and Borneo. At about 45 Ma Australia began to move north, subduction resumed and there was widespread rifting within Sundaland. During the Paleogene east and north Borneo were largely submerged, the Makassar Straits became a wide marine barrier within Sundaland, and West Sulawesi was separated from Sundaland but included land. By the Early Miocene the proto-South China Sea had been eliminated by subduction leading to emergence of land in central Borneo, Sabah and Palawan. Australia-SE Asia collision began, eliminating the former deep ocean separating the two continents, and forming the region now known as Wallacea. The microplate or

  11. Polar record of Early Jurassic massive carbon injection

    Science.gov (United States)

    Suan, Guillaume; Nikitenko, Boris L.; Rogov, Mikhail A.; Baudin, François; Spangenberg, Jorge E.; Knyazev, Valeriy G.; Glinskikh, Larisa A.; Goryacheva, Anna A.; Adatte, Thierry; Riding, James B.; Föllmi, Karl B.; Pittet, Bernard; Mattioli, Emanuela; Lécuyer, Christophe

    2011-12-01

    The Toarcian Oceanic Anoxic Event (T-OAE) (ca. 182 Myr, Early Jurassic) represents one of the best-recognized examples of greenhouse warming, decreased seawater oxygenation and mass extinction. The leading hypothesis to explain these changes is the massive injection of thermogenic or gas hydrate-derived 13C-depleted carbon into the atmosphere, resulting in a > 3 per mil negative carbon isotope excursion (CIE), accelerated nutrient input and dissolved oxygen consumption in the oceans. Nevertheless, the lack of a precisely dated record of the T-OAE outside low latitudes has led to considerable debate about both its temporal and spatial extent and hence concerning its underlying causes. Here we present new isotopic and lithological data from three precisely dated N Siberian sections, which demonstrate that mass extinction and onset of strong oxygen-deficiency occurred near synchronously in polar and most tropical sites and were intimately linked to the onset of a marked 6‰ negative CIE recorded by bulk organic carbon. Rock Eval pyrolysis data from Siberia and comparisons with low latitudes show that the CIE cannot be explained by the extent of stratification of the studied basins or changes in organic matter sourcing and suggest that the negative CIE reflects rapid 13C-depleted carbon injection to all exchangeable reservoirs. Sedimentological and palynological indicators show that the injection coincided with a change from cold (abundant glendonites and exotic boulder-sized clasts) to exceptionally warm conditions (dominance of the thermophyllic pollen genus Classopollis) in the Arctic, which likely triggered a rapid, possibly partly glacioeustatic sea-level rise. Comparisons with low latitude records reveal that warm climate conditions and poor marine oxygenation persisted in continental margins at least 600 kyr after the CIE, features that can be attributed to protracted and massive volcanic carbon dioxide degassing. Our data reveal that the T-OAE profoundly

  12. Reduced response to IKr blockade and altered hERG1a/1b stoichiometry in human heart failure.

    Science.gov (United States)

    Holzem, Katherine M; Gomez, Juan F; Glukhov, Alexey V; Madden, Eli J; Koppel, Aaron C; Ewald, Gregory A; Trenor, Beatriz; Efimov, Igor R

    2016-07-01

    Heart failure (HF) claims 250,000 lives per year in the US, and nearly half of these deaths are sudden and presumably due to ventricular tachyarrhythmias. QT interval and action potential (AP) prolongation are hallmark proarrhythmic changes in the failing myocardium, which potentially result from alterations in repolarizing potassium currents. Thus, we aimed to examine whether decreased expression of the rapid delayed rectifier potassium current, IKr, contributes to repolarization abnormalities in human HF. To map functional IKr expression across the left ventricle (LV), we optically imaged coronary-perfused LV free wall from donor and end-stage failing human hearts. The LV wedge preparation was used to examine transmural AP durations at 80% repolarization (APD80), and treatment with the IKr-blocking drug, E-4031, was utilized to interrogate functional expression. We assessed the percent change in APD80 post-IKr blockade relative to baseline APD80 (∆APD80) and found that ∆APD80s are reduced in failing versus donor hearts in each transmural region, with 0.35-, 0.43-, and 0.41-fold reductions in endo-, mid-, and epicardium, respectively (p=0.008, 0.037, and 0.022). We then assessed hERG1 isoform gene and protein expression levels using qPCR and Western blot. While we did not observe differences in hERG1a or hERG1b gene expression between donor and failing hearts, we found a shift in the hERG1a:hERG1b isoform stoichiometry at the protein level. Computer simulations were then conducted to assess IKr block under E-4031 influence in failing and nonfailing conditions. Our results confirmed the experimental observations and E-4031-induced relative APD80 prolongation was greater in normal conditions than in failing conditions, provided that the cellular model of HF included a significant downregulation of IKr. In human HF, the response to IKr blockade is reduced, suggesting decreased functional IKr expression. This attenuated functional response is associated with

  13. Recent advances in waterglass sand technologies

    Institute of Scientific and Technical Information of China (English)

    ZHU Chun-xi

    2007-01-01

    This paper reports some new understandings and advances in waterglass sand technologies. The multiple chemical modification process can increase the binding strength of the waterglass sand by up to 50%-70%.Therefore, the additions of the modified waterglass can be decreased to 3.0%-4.0% for CO2 process and to 2.0%-2.5% for organic ester hardening process, and greatly improve the collapsibility and reclaimability of the sand. Based on the new understandings and experimental results reported in this paper, several original ideas, such as nano modification, have been proposed to promote advances of waterglass sand technologies,

  14. PROSPECTS FIXATION DRIFT SANDS PHYSICOCHEMICAL METHOD

    Directory of Open Access Journals (Sweden)

    Maujuda MUZAFFAROVA

    2016-09-01

    Full Text Available This article is based on the theoretical foundations of secure mobile sand being considered for reducing the negative impact of one of the manifestations of exogenous plains on such an important natural-technical system as a railroad. It suggests practical measures to build a system of design protection against sand drifts. The article also suggests ways to conserve resources and rational use of machinery and performers as well as the consolidation of mobile sand wet with water soluble waste of local production of waste dextrin. Consolidation is exposed on dry and wet sand.

  15. Innovative developments in sand reclamation technologies

    Directory of Open Access Journals (Sweden)

    R. Dañko

    2011-04-01

    Full Text Available Proper sand management and efficient sand reclamation system are two main factors influencing economical and ecological side of modern foundry plant. It is well known fact that the production of 1 metric ton of casting from ferrous alloys generates circa 1 metric ton of waste [1], which due to containing certain amounts of harmful and dangerous compounds should undergo a reclamation – at least of the main component, which means a silica sand grains. The paper present problems of scientific and development research concerning the innovative reclamation technologies of used foundry sands such as: mechanical-cryogenic reclamation and innovative thermal reclamation.

  16. The role of TMPRSS2:ERG in molecular stratification of PCa and its association with tumor aggressiveness: a study in Brazilian patients.

    Science.gov (United States)

    Eguchi, Flávia C; Faria, Eliney F; Scapulatempo Neto, Cristovam; Longatto-Filho, Adhemar; Zanardo-Oliveira, Cleyton; Taboga, Sebastião R; Campos, Silvana G P

    2014-07-10

    Recurrent gene fusions between the genes TMPRSS2 and ERG have been described in prostate cancer (PCa) and are found in 27% to 79% of radical prostatectomy. This fusion transcription results in ERG overexpression, which can be detected by immunohistochemistry (IHC) and provide a potential diagnostic marker for PCa. Three tissue microarrays (TMAs) containing samples from 98 patients with PCa and one TMA of 27 samples from individuals without PCa were tested for ERG immunostaining, and the presence of TMPRSS2:ERG transcripts was confirmed by quantitative real time PCR (qRT-PCR). The results showed that 46.9% of tumors tested positive for ERG immunostaining, and this finding was consistent with the results of qRT-PCR testing (k = 0.694, p tools in detecting TMPRSS2:ERG fusions. A correlation between ERG expression and clinical and pathological parameters was not found, but the frequency, specificity and recurrence of ERG in PCa suggests that it may be a potential adjunct diagnostic tool.

  17. Sand Failure Mechanism and Sanding Parameters in Niger Delta Oil Reservoirs

    OpenAIRE

    Sunday Isehunwa,; Andrew Farotade

    2010-01-01

    Sand production is a major issue during oil and gas production from unconsolidated reservoirs. In predicting the onset of sand production, it is important to accurately determine the failure mechanism and the contributing parameters. The aim of this study was to determine sand failure mechanism in the Niger-Delta, identify themajor contributing parameters and evaluate their effects on sanding.Completion and production data from 78 strings completed on 22 reservoirs in a Niger Delta oil Field ...

  18. Effects of the histamine H1 receptor antagonist hydroxyzine on hERG K+ channels and cardiac action potential duration

    Institute of Scientific and Technical Information of China (English)

    Byung Hoon LEE; Seung Ho LEE; Daehyun CHU; Jin Won HYUN; Han CHOE; Bok Hee CHOI; Su-Hyun JO

    2011-01-01

    To investigate the effects of hydroxyzine on human ether-a-go-go-related gene (hERG) channels to determine the electrolphysiological basis for its proarrhythmic effects.Methods:hERG channels were expressed in Xenopus oocytes and HEK293 cells,and the effects of hydroxyzine on the channels were examined using two-microelectrode voltage-clamp and patch-clamp techniques,respectively.The effects of hydroxyzine on action potential duration were examined in guinea pig ventricular myocytes using current clamp.Results:Hydroxyzine (0.2 and 2 μmol/L) significantly increased the action potential duration at 90% repolarization (APD90) in both concentration- and time-dependent manners.Hydroxyzine (0.03-3 μmol/L) blocked both the steady-state and tail hERG currents.The block was voltage-dependent,and the values of IC50 for blocking the steady-state and tail currents at +20 mV was 0.18±0.02 μmol/L and 0.16±0.01 μmol/L,respectively,in HEK293 cells.Hydroxyzine (5 μmol/L) affected both the activated and the inactivated states of the channels,but not the closed state.The S6 domain mutation Y652A attenuated the blocking of hERG current by ~6-fold.Conclusion:The results suggest that hydroxyzine could block hERG channels and prolong APD.The tyrosine at position 652 in the channel may be responsible for the proarrhythmic effects of hydroxyzine.

  19. Palaeoecology and depositional environments of the Tendaguru Beds (Late Jurassic to Early Cretaceous, Tanzania

    Directory of Open Access Journals (Sweden)

    M. Aberhan

    2002-01-01

    Full Text Available The Late Jurassic to Early Cretaceous Tendaguru Beds (Tanzania, East Africa have been well known for nearly a century for their diverse dinosaur assemblages. Here, we present sedimentological and palaeontological data collected by the German-Tanzanian Tendaguru Expedition 2000 in an attempt to reconstruct the palaeo-ecosystems of the Tendaguru Beds at their type locality. Our reconstructions are based on sedimentological data and on a palaeoecological analysis of macroinvertebrates, microvertebrates, plant fossils and microfossils (ostracods, foraminifera, charophytes, palynomorphs. In addition, we included data from previous expeditions, particularly those on the dinosaur assemblages. The environmental model of the Tendaguru Beds presented herein comprises three broad palaeoenvironmental units in a marginal marine setting: (1 Lagoon-like, shallow marine environments above fair weather wave base and with evidence of tides and storms. These formed behind barriers such as ooid bar and siliciclastic sand bar complexes and were generally subject to minor salinity fluctuations. (2 Extended tidal flats and low-relief coastal plains. These include low-energy, brackish coastal lakes and ponds as well as pools and small fluvial channels of coastal plains in which the large dinosaurs were buried. Since these environments apparently were, at best, poorly vegetated, the main feeding grounds of giant sauropods must have been elsewhere. Presumably, tidal flats and coastal plains were visited by dinosaurs primarily during periods of drought. (3 Vegetated hinterland. Vegetation of this environment can only be inferred indirectly from plant material transported into the other depositional environments. Vegetation was dominated by a diverse conifer flora, which apparently formed part of the food source of large herbivorous sauropods. Evidence from various sources suggests a subtropical to tropical palaeoclimate, characterised by seasonal rainfall alternating with

  20. Multi-Method Provenance Analysis of Namibian Desert Sand

    Science.gov (United States)

    Vermeesch, P.; Garzanti, E.

    2014-12-01

    Mineralogical, geochemical and geochronological provenance proxies each have their own strengths and weaknesses: a. Bulk geochemistry, framework petrography and heavy mineral compositions can differentiate between source areas characterised by different lithologies, but are sensitive to hydraulic sorting and chemical alteration. b. Detrital zircon U-Pb geochronology is insensitive to winnowing effects, but is 'blind' to lithologies devoid of zircon and cannot differentiate between first cycle and recycled sediments. c. Cosmogenic neon isotopes can be used to identify different generations of surface exposure while simultaneously tracking different magmatic sources. The challenge is then to combine these different proxies into a self consistent story, and do so in as objective a manner as possible. We here present a case study of Namibia's Namib Sand Sea and Skeleton Coast ergs, in which all the aforementioned methods have been combined using a three-way multidimensional scaling (aka INDividual Differences SCALing or INDSCAL) analysis: 1. Each of the datasets was represented by a 'dissimilarity matrix' of pairwise distances between samples. 2. The set of these matrices was fed into the INDSCAL algorithm, which produces two pieces of graphical output: the 'group configuration', which is a scatter plot or 'map' in which similar samples plot close together and dissimilar samples plot far apart, and the 'proxy weights', in which not the samples but the proxies are plotted according to the weight they attached to the 'group configuration' axes. The INDSCAL map of the Namibia dataset indicates that (a) long-shore drift of Orange River sediments dominates the coastal sediment compositions all along the Namibian coast until Angola, and (b) that light and heavy minerals tell complementary parts of the provenance story.

  1. Response to Comment on "A Jurassic ornithischian dinosaur from Siberia with both feathers and scales".

    Science.gov (United States)

    Godefroit, Pascal; Sinitsa, Sofia M; Dhouailly, Danielle; Bolotsky, Yuri L; Sizov, Alexander V; McNamara, Maria E; Benton, Michael J; Spagna, Paul

    2014-10-24

    Lingham-Soliar questions our interpretation of integumentary structures in the Middle-Late Jurassic ornithischian dinosaur Kulindadromeus as feather-like appendages and alternatively proposes that the compound structures observed around the humerus and femur of Kulindadromeus are support fibers associated with badly degraded scales. We consider this hypothesis highly unlikely because of the taphonomy and morphology of the preserved structures.

  2. Battling Jurassic Park: From a Fascination with Violence toward Constructive Knowledge.

    Science.gov (United States)

    Cain, Beverlyn; Bohrer, Cynthia

    1997-01-01

    Studied preschool children's inability to distinguish fantasy from fact utilizing the case of the popular movie Jurassic Park and the subsequent false information children obtained about dinosaurs. Described attempts made by teachers to address the resultant aggressive behavior and false knowledge gained and replace it with constructive knowledge.…

  3. Palynology of uppermost Jurassic and lowermost Cretaceous strata in the Eastern Netherlands

    NARCIS (Netherlands)

    Burger, D.

    1965-01-01

    The present investigation is a systematical treatment of the sporomorphs from strata at the Jurassic-Cretaceous boundary in the eastern Netherlands Twente area, and an attempt to apply palynology to detailed stratigraphical study, by making use of quantitative pollen analyses. The rock samples used

  4. The potential of vertebrate microfossils for marine to non-marine correlation in the Late Jurassic

    Institute of Scientific and Technical Information of China (English)

    Detlev Thies; Alexander Mudroch; Susan Turner

    2007-01-01

    Fish (cartilaginous: elasmobranch and bony: osteichthyan actinopterygian) and reptile (crocodile) microfossils comprising scales and teeth have been examined from a series of limestone samples in the Upper Jurassic of France and Germany to gauge the possibilities of using them for correlation between fully marine and hypo- or hyper-saline (non-marine) deposits.

  5. 3D visualisation of a Jurassic oolitic system with GPR data, Isle of Portland (UK)

    DEFF Research Database (Denmark)

    Moreau, Julien; Hansen, Trine Lykke; Nielsen, Lars

    The Isle of Portland shows exposure of uppermost Jurassic oolitic carbonate all along its coast and within several inland quarries. The exposure quality is very high with a potential 3D control. The site has a potential to understand the 3D architecture and the sedimentary dynamic of an oolitic s...

  6. Strobilus organization in the enigmatic gymnosperm Bernettia inopinata from the Jurassic of Germany

    NARCIS (Netherlands)

    Kustatscher, E.; van Konijnenburg - van Cittert, J.H.A.; Bauer, K.; Krings, M.

    2016-01-01

    The enigmatic fossil Bernettia inopinata from Lower Jurassic strata of Upper Franconia, Germany, has been described as a leaf-like structure a leaf-like structure bearing a proximal cluster of densely spaced, pillow-like objects believed to represent ovules or ovule-containing units. The systematic

  7. New finds of stegosaur tracks from the Upper Jurassic Lourinhã formation, Portugal

    DEFF Research Database (Denmark)

    Mateus, Octavio; Milàn, Jesper; Romano, Michael

    2011-01-01

    Eleven new tracks from the Upper Jurassic of Portugal are described and attributed to the stegosaurian ichnogenus Deltapodus. One track exhibits exceptionally well−preserved impressions of skin on the plantar surface, showing the stegosaur foot to be covered by closely spaced skin tubercles of ca...

  8. Geochemical Characteristics of REE in Jurassic Coal of Yan'an Formation from Dongsheng Coalfield

    Institute of Scientific and Technical Information of China (English)

    赵峰华; 丛志远; 彭苏萍; 唐跃刚; 任德贻

    2002-01-01

    Concentrations of rare earth elements (REE) in Jurassic coal of YanAn Formation from Dongsheng coalfield located in the northeast of Ordos basin were determined by instrumental neutron activation analysis (INAA). Curves of distrib ution pattern of REE were drawn, and many geochemical parameters were calculated . The result shows that 1) The contents of REE in Jurassic coal with low ash an d sulfur are lower than those of Carboniferous and Permian coal from the Basin of North China; 2) Inside the Dongsheng coalfield, coal from the north has high er contents of REE than that form the south because the north is near the area of source rock which is the main supplier of REE, while the south is far away from the area of source rocks; 3) Although Jurassic coal in Dongsheng is the low-ash coal with less than 10%, the contents of REE are still proportional to ash yie ld of ash and SiO2 contents. 4) Although the Jurassic coal in Dongsheng were deposited in oxidative continental environment of river-lake, Eu depletion of RE E I n coal commonly exists, and positive abnormity of Ce dose not exist. This reflec ts the REE distribution pattern of REE in source rock of continental area; and 5) Compared with other rocks, coal shows extremely complexity of distribution pa ttern of REE, which is the result of continuous alteration and redistribution of matter in coal occurred in open basin system.

  9. Klukiopsis jurassica——A new Jurassic schizaeaceous fern from China

    Institute of Scientific and Technical Information of China (English)

    邓胜徽[1; 王仕俊[2

    2000-01-01

    A new Jurassic schizaeaceous fern Klukiopsis jurassica gen. et sp. nov. from Yima, Henan Province, China is described. The new fern is characterized by the abaxial sori arranged in two rows, apical and complete annulus and more than 800 smooth trilete spores in each sorus.

  10. The upper Jurassic-lower cretaceous siliciclastic system in the Morocco offshore - Prevenance, transport and deposition

    NARCIS (Netherlands)

    Bertotti, G.; Arantegui, A.; Charton, R.; Luber, T.; Redfern, J.

    2015-01-01

    The Morocco segment of the Central Atlantic passive continental margin experienced km-scale exhumation during the early post-rift (late Jurassic-Early Cretaceous). In the Meseta and the High Atlas this led to the development of a N-S trending ridge sourcing terrigenous sediments which were brought t

  11. Battling Jurassic Park: From a Fascination with Violence toward Constructive Knowledge.

    Science.gov (United States)

    Cain, Beverlyn; Bohrer, Cynthia

    1997-01-01

    Studied preschool children's inability to distinguish fantasy from fact utilizing the case of the popular movie Jurassic Park and the subsequent false information children obtained about dinosaurs. Described attempts made by teachers to address the resultant aggressive behavior and false knowledge gained and replace it with constructive knowledge.…

  12. Sense-Making--a Case Study Using the Movie "Jurassic Park."

    Science.gov (United States)

    Murphy, Tony P.

    1996-01-01

    Introduces Sense-Making, an alternative methodology which allows an insight into a person's perception of reality. Interviews science teachers following a viewing of "Jurassic Park" to investigate the relationship of the movie to their ontological view of science, society, and self. (Author/MVL)

  13. New Isophlebioid Dragonflies from the Middle Jurassic of Inner Mongolia, China (Insecta: Odonata: Isophlebioptera:Campterophlebiidae)

    Institute of Scientific and Technical Information of China (English)

    ZHANG Binglan; REN Dong; PANG Hong

    2008-01-01

    Three new species of fossil dragonflies assigned to Sinokaratawia Nel, Huang and Lin in family Campterophlebiidae, i.e. S. daohugouica sp. nov., S. magica sp. nov. and S. gloriosa sp. nov., and new materials of male S. prokopi Nel, Huang and Lin, 2007 are described from the Middle Jurassic of Daohugou, Inner Mongolia, China. An emended diagnosis of genus Sinokaratawia was proposed.

  14. Study of Black Sand Particles from Sand Dunes in Badr, Saudi Arabia Using Electron Microscopy

    Directory of Open Access Journals (Sweden)

    Haider Abbas Khwaja

    2015-08-01

    Full Text Available Particulate air pollution is a health concern. This study determines the microscopic make-up of different varieties of sand particles collected at a sand dune site in Badr, Saudi Arabia in 2012. Three categories of sand were studied: black sand, white sand, and volcanic sand. The study used multiple high resolution electron microscopies to study the morphologies, emission source types, size, and elemental composition of the particles, and to evaluate the presence of surface “coatings or contaminants” deposited or transported by the black sand particles. White sand was comprised of natural coarse particles linked to wind-blown releases from crustal surfaces, weathering of igneous/metamorphic rock sources, and volcanic activities. Black sand particles exhibited different morphologies and microstructures (surface roughness compared with the white sand and volcanic sand. Morphological Scanning Electron Microscopy (SEM and Laser Scanning Microscopy (LSM analyses revealed that the black sand contained fine and ultrafine particles (50 to 500 nm ranges and was strongly magnetic, indicating the mineral magnetite or elemental iron. Aqueous extracts of black sands were acidic (pH = 5.0. Fe, C, O, Ti, Si, V, and S dominated the composition of black sand. Results suggest that carbon and other contaminant fine particles were produced by fossil-fuel combustion and industrial emissions in heavily industrialized areas of Haifa and Yanbu, and transported as cloud condensation nuclei to Douf Mountain. The suite of techniques used in this study has yielded an in-depth characterization of sand particles. Such information will be needed in future environmental, toxicological, epidemiological, and source apportionment studies.

  15. Evolutionary and Ecological Sequelae of Mass Extinctions: Examples From the Continental Triassic-Jurassic Boundary

    Science.gov (United States)

    Olsen, P. E.; Whiteside, J. H.

    2003-12-01

    The Triassic-Jurassic boundary at ˜200 Ma marks one of the five major mass-extinctions of the Phanerozoic and, depending on the metrics used, was similar in magnitude to the K-T mass extinction. In continental environments about 50% of all tetrapod families are eliminated and although floral diversity change is difficult to gauge, a similar proportion of palynomorph taxa disappear at the boundary. The extinction event appears to have been very abrupt, followed by a roughly 900 ky super-greenhouse period characterized by increased precipitation. We hypothesize a series of biological consequences of the drop in diversity and associated super-greenhouse based on observations of the earliest Jurassic assemblages, largely from eastern North America. 1) The drop in diversity results in a collapse of ecological interactions that tend to stabilize the composition of regional biotas and buffer them from invading forms. Triassic assemblages show considerable biogeographic provinciality despite the existence of Pangea, but the earliest Jurassic assemblages were extraordinarily homogenous with many vertebrate genera being essentially global in distribution. 2) Initially the post-boundary terrestrial assemblages were comprised of eurytopic trophic generalists, with animal communities with few herbivores, but abundant carnivores and detritivores subsisting on aquatic-based food webs. The earliest Jurassic tetrapod footprint record is overwhelmingly dominated by the footprints of ceratosaurian theropod dinosaurs, the latter having skull characteristics usually associated at least in part with piscivory. 3) The dramatic size changes over very short periods of time were likely due to an absence of competition (i.e., ecological release). The maximum size of theropod dinosaur footprints increased by about 25% within 10 ky following the boundary, corresponding to a doubling of mass. 4) Representatives of clades with intrinsically high rates of speciation tend to form species flocks

  16. Pattern formation - Instabilities in sand ripples

    DEFF Research Database (Denmark)

    Hansen, J. L.; v. Hecke, M.; Haaning, A.

    2001-01-01

    Sand ripples are seen below shallow wavy water and are formed whenever water oscillates over a bed of sand. Here we analyse the instabilities that can upset this perfect patterning when the ripples are subjected to large changes in driving amplitude or frequency, causing them to deform both...

  17. Pilot Project Sand Groynes Delfland Coast

    NARCIS (Netherlands)

    Hoekstra, R.; Walstra, D.J.R.; Swinkels, C.S.

    2012-01-01

    In October and November 2009 a pilot project has been executed at the Delfland Coast in the Netherlands, constructing three small sandy headlands called Sand Groynes. Sand Groynes are nourished from the shore in seaward direction and anticipated to redistribute in the alongshore due to the impact of

  18. Silica sand resources in the Netherlands

    NARCIS (Netherlands)

    Meulen, M.J. van der; Westerhoff, W.E.; Menkovic, A.; Gruijters, S.H.L.L.; Dubelaar, C.W.; Maljers, D.

    2009-01-01

    Silica sand, (almost) pure quartz sand, is a valuable and scarce mineral resource within the shallow Dutch subsurface. High-grade deposits are exploited in the southeastemmost part of the country, as raw material for the glass, ceramic, chemical and other process industries. Dutch land-use policy re

  19. Pilot Project Sand Groynes Delfland Coast

    NARCIS (Netherlands)

    Hoekstra, R.; Walstra, D.J.R.; Swinkels, C.S.

    2012-01-01

    In October and November 2009 a pilot project has been executed at the Delfland Coast in the Netherlands, constructing three small sandy headlands called Sand Groynes. Sand Groynes are nourished from the shore in seaward direction and anticipated to redistribute in the alongshore due to the impact of

  20. Understanding Colombian Amazonian white sand forests

    NARCIS (Netherlands)

    Peñuela-Mora, M.C.

    2014-01-01

    Although progress has been made in studies on white sand forests in the Amazon, there is still a considerable gap in our knowledge of the unique species composition of white sand forests and their structure and dynamics, especially in Western Amazon. This thesis aims to fill this gap by addressing t

  1. Jurassic extension and Cenozoic inversion tectonics in the Asturian Basin, NW Iberian Peninsula: 3D structural model and kinematic evolution

    Science.gov (United States)

    Uzkeda, Hodei; Bulnes, Mayte; Poblet, Josep; García-Ramos, José Carlos; Piñuela, Laura

    2016-09-01

    We constructed a geological map, a 3D model and cross-sections, carried out a structural analysis, determined the stress fields and tectonic transport vectors, restored a cross section and performed a subsidence analysis to unravel the kinematic evolution of the NE emerged portion of the Asturian Basin (NW Iberian Peninsula), where Jurassic rocks crop out. The major folds run NW-SE, normal faults exhibit three dominant orientations: NW-SE, NE-SW and E-W, and thrusts display E-W strikes. After Upper Triassic-Lower Jurassic thermal subsidence, Middle Jurassic doming occurred, accompanied by normal faulting, high heat flow and basin uplift, followed by Upper Jurassic high-rate basin subsidence. Another extensional event, possibly during Late Jurassic-Early Cretaceous, caused an increment in the normal faults displacement. A contractional event, probably of Cenozoic age, led to selective and irregularly distributed buttressing and fault reactivation as reverse or strike-slip faults, and folding and/or offset of some previous faults by new generation folds and thrusts. The Middle Jurassic event could be a precursor of the Bay of Biscay and North Atlantic opening that occurred from Late Jurassic to Early Cretaceous, whereas the Cenozoic event would be responsible for the Pyrenean and Cantabrian ranges and the partial closure of the Bay of Biscay.

  2. Sand transportation and reverse patterns over leeward face of sand dune

    Science.gov (United States)

    Jiang, Hong; Dun, Hongchao; Tong, Ding; Huang, Ning

    2017-04-01

    Sand saltation has complex interactions with turbulent flow and dune form. Most models of wind-blown sand consider ideal circumstances such as steady wind velocity and a flat surface, and the bulk of data on wind flow and sand transport over an individual dune has focused mostly on the influence of dune shape or inter-dune space on the wind flow, neglecting the effect of morphology on sand saltation, particularly airflow and sand transportation over the leeward slope. Wind flow structures over the leeward slope of sand dunes have a fundamental influence on the organization of sand dunes. In order to understand sand dune dynamics, lee face airflow and sediment transportation should be paid more attention. Previous field observations could not measure turbulent flow structure well because of the limited observation points and the influence of experiment structure on wind field. In addition, the reverse sand particles over leeward face could not be collected by sand trap in field. Numerous field observations could not measure turbulent flow structure because of the limited observation points and the influence of experimental structures on the wind field. In addition, the reverse transport of sand particles over leeward face could not be collected by sand traps in field. Therefore, this paper aims to investigate the turbulent flow structure and sand transport pattern over the leeward slope. A numerical model of sand saltation over slope terrain is constructed, which also considers the coupling effects between air flow and sand particles. The large eddy simulation method is used to model turbulent flow. Sand transport is simulated by tracking the trajectory of each sand particle. The results show that terrain significantly alters the turbulent air flow structure and wind-blown sand movement, especially over the leeward slope. Here, mass flux increases initially and then decreases with height in the reversed flow region in the direction of wind flow, and the mass flux

  3. Basin geodynamics and sequence stratigraphy of Upper Triassic to Lower Jurassic deposits of Southern Tunisia

    Science.gov (United States)

    Carpentier, Cédric; Hadouth, Suhail; Bouaziz, Samir; Lathuilière, Bernard; Rubino, Jean-Loup

    2016-05-01

    Aims of this paper are to propose a geodynamic and sequential framework for the late Triassic and early Jurassic of and south Tunisia and to evidence the impact of local tectonics on the stratigraphic architecture. Facies of the Upper Triassic to Lower Jurassic of Southern Tunisia have been interpreted in terms of depositional environments. A sequential framework and correlation schemes are proposed for outcrops and subsurface transects. Nineteen middle frequency sequences inserted in three and a half low frequency transgression/regression cycles were evidenced. Despite some datation uncertainties and the unknown durations of Lower Jurassic cycles, middle frequency sequences appear to be controlled by eustasy. In contrast the tectonics acted as an important control on low frequency cycles. The Carnian flooding was certainly favored by the last stages of a rifting episode which started during the Permian. The regression accompanied by the formation of stacked angular unconformities and the deposition of lowstand deposits during the late Carnian and Norian occured during the uplift and tilting of the northern basin margins. The transpressional activity of the Jeffara fault system generated the uplift of the Tebaga of Medenine high from the late Carnian and led to the Rhaetian regional angular Sidi Stout Unconformity. Facies analysis and well-log correlations permitted to evidence that Rhaetian to Lower Jurassic Messaoudi dolomites correspond to brecciated dolomites present on the Sidi Stout unconformity in the North Dahar area. The Early-cimmerian compressional event is a possible origin for the global uplift of the northern African margin and Western Europe during the late Carnian and the Norian. During the Rhaetian and the early Jurassic a new episode of normal faulting occured during the third low frequency flooding. This tectonosedimentary evolution ranges within the general geodynamic framework of the north Gondwana margin controlled by the opening of both

  4. Choosing an optimum sand control method

    Directory of Open Access Journals (Sweden)

    Ehsan Khamehchi

    2015-06-01

    Full Text Available Formation sand control is always one of the main concerns of production engineers. There are some different methods to prevent sand production. Choosing a method for preventing formation sand production depends on different reservoir parameters and politic and economic conditions. Sometimes, economic and politic conditions are more effective to choose an optimum than reservoir parameters. Often, simultaneous investigation of politic and economic conditions with reservoir parameters has different results with what is expected. So, choosing the best sand control method is the result of thorough study. Global oil price, duration of sand control project and costs of necessary equipment for each method as economic and politic conditions and well productivity index as reservoir parameter are the main parameters studied in this paper.

  5. Trans-border (north-east Serbia/north-west Bulgaria correlations of the Jurassic lithostratigraphic units

    Directory of Open Access Journals (Sweden)

    Tchoumatchenco Platon

    2011-01-01

    Full Text Available Herein, correlations of the Jurassic sediments from NE Serbia with those of NW Bulgaria are made. The following Jurassic palaeogeographic units: the Eastern Getic, the Infra-Getic and the Moesian Platform are included in the study. The East Getic was studied in the outcrops near Rgotina, where the sedimentation started in the Hettangian and continued during the Callovian-Late Jurassic and is represented by platform carbonates. The Infra-Getic is documented by the sections of Dobra (Pesača and the allochtonous sediments near the Štubik. Very important for the Infra-Getic are the Late Jurassic volcano-sedimentary deposits of the Vratarnica Series, which crop out near Vratarnica Village. The Jurassic Moesian platform was studied in the sections near D. Milanovac and Novo Korito (Serbia and in their prolongation in NW Bulgaria into the Gornobelotintsi palaeograben. Very important are the correlation in the region of Vrška Čuka (Serbia and Vrashka Chuka (Bulgaria - Rabisha Village (Magura Cave. A revision of the Jurassic sediments on the Vidin palaeohorst, which were studied in the Belogradchik palaeohorst, Gorno-Belotintsi palaeograben, Belimel palaeohorst and the Mihaylovgrad palaeograben, is made. The sedimentation on the Vidin palaeohorst started during different parts of the Middle Jurassic, and in the Mihaylovgrad palaeograben during the Hettangian (Lower Jurassic where the sediments were deposited in relatively deeper water conditions. To south, the relatively shallow water sediments deposited on the Jurassic Vratsa palaeohorst on the southern board of the Mihaylovgrad palaeograben are described.

  6. Altitude of the top of the Sparta Sand and Memphis Sand in three areas of Arkansas

    Science.gov (United States)

    Pugh, Aaron L.; Westerfield, Paul W.; Gonthier, Gerard; Poynter, David T.

    1998-01-01

    The Sparta Sand and Memphis Sand form the second most productive aquifer in Arkansas. The Sparta Sand and Memphis Sand range in thick- ness from 0 to 900 feet, consisting of fine- to medium-grained sands interbedded with layers of silt, clay, shale, and minor amounts of lignite. Within the three areas of interest, the top surface of the Sparta Sand and Memphis Sand dips regionally east and southeast towards the axis of the Mississippi Embayment syncline and Desha Basin. Local variations in the top surface may be attributed to a combination of continued development of structural features, differential compaction, localized faulting, and erosion of the surface prior to subsequent inundation and deposition of younger sediments.

  7. Sand Failure Mechanism and Sanding Parameters in Niger Delta Oil Reservoirs

    Directory of Open Access Journals (Sweden)

    Sunday Isehunwa,

    2010-05-01

    Full Text Available Sand production is a major issue during oil and gas production from unconsolidated reservoirs. In predicting the onset of sand production, it is important to accurately determine the failure mechanism and the contributing parameters. The aim of this study was to determine sand failure mechanism in the Niger-Delta, identify themajor contributing parameters and evaluate their effects on sanding.Completion and production data from 78 strings completed on 22 reservoirs in a Niger Delta oil Field were evaluated. Sand failure mechanisms and contributing parameters were identified and compared with published profiles. The results showed that cohesive stress is the predominant sand failure mechanism. Water cut, bean size and gas oil ratio (GOR impact sand production in the Niger Delta.

  8. Global sand trade is paving the way for a tragedy of the sand commons

    Science.gov (United States)

    Torres, A.; Brandt, J.; Lear, K.; Liu, J.

    2016-12-01

    In the first 40 years of the 21st century, planet Earth is highly likely to experience more urban land expansion than in all of history, an increase in transportation infrastructure by more than a third, and a great variety of land reclamation projects. While scientists are beginning to quantify the deep imprint of human infrastructure on biodiversity at large scales, its off-site impacts and linkages to sand mining and trade have been largely ignored. Sand is the most widely used building material in the world. With an ever-increasing demand for this resource, sand is being extracted at rates that far exceed its replenishment, and is becoming increasingly scarce. This has already led to conflicts around the world and will likely lead to a "tragedy of the sand commons" if sustainable sand mining and trade cannot be achieved. We investigate the environmental and socioeconomic interactions over large distances (telecouplings) of infrastructure development and sand mining and trade across diverse systems through transdisciplinary research and the recently proposed telecoupling framework. Our research is generating a thorough understanding of the telecouplings driven by an increasing demand for sand. In particular, we address three main research questions: 1) Where are the conflicts related to sand mining occurring?; 2) What are the major "sending" and "receiving" systems of sand?; and 3) What are the main components (e.g. causes, effects, agents, etc.) of telecoupled systems involving sand mining and trade? Our results highlight the role of global sand trade as a driver of environmental degradation that threatens the integrity of natural systems and their capacity to deliver key ecosystem services. In addition, infrastructure development and sand mining and trade have important implications for other sustainability challenges such as over-fishing and global warming. This knowledge will help to identify opportunities and tools to better promote a more sustainable use

  9. Rock doughnut and pothole structures of the Clarens Fm. Sandstone in the Karoo Basin, South Africa: Possible links to Lower Jurassic fluid seepage

    Science.gov (United States)

    Grab, Stefan; Svensen, Henrik

    2011-08-01

    South Africa has a wealth of sandstone landforms, yet many of these have not been examined in detail to expand knowledge on their morphology and process origins. Here we present data on primary morphological statistics, rock hardness, surface roughness and petrographic investigations of rock doughnuts and associated pothole structures in Golden Gate Highlands National Park (GGHNP) and in the Witkop III complex, with the aim of using such data and field observations to argue their likely origins. Schmidt hammer R-values indicate consistently harder doughnut rims (mean = 48.7; n = 150) than the enclosed potholes (mean = 37.8; n = 150) and surrounding sandstone platform (mean = 39.7; n = 250). The petrography of Clarens Fm. Sandstone shows that the typical whitish sandstone is affected by intense chemical weathering. Pothole rims and the irregular reddish crust typical of the Witkop III outcrops show a secondary cementation by microcrystalline silica. Although preservation of old land surfaces is difficult to prove, small and circular pipe structures filled with calcite-cemented sand are present locally surrounding the Witkop III hydrothermal complex, and represent conduits for fluidized sand. Based on the morphologies of the Witkop III summit with the associated potholes and pipes, we hypothesize that they are remnants of morphologies created by Jurassic fluid seepage, with a superimposed and secondary silica cementation. Given that fluidization structures evidently occur in Clarens Fm. Sandstone, as is the case at Witkop, such mechanisms could possibly have contributed to the observed rock doughnut structures elsewhere on Clarens Fm. Sandstones, such as at the GGHNP where the rock doughnut morphological attributes are typical to landforms originating from fluid venting.

  10. Reduced susceptibility to polyenes associated with a missense mutation in the ERG6 gene in a clinical isolate of Candida glabrata with pseudohyphal growth.

    Science.gov (United States)

    Vandeputte, Patrick; Tronchin, Guy; Bergès, Thierry; Hennequin, Christophe; Chabasse, Dominique; Bouchara, Jean-Philippe

    2007-03-01

    Little information is available about the molecular mechanisms responsible for polyene resistance in pathogenic yeasts. A clinical isolate of Candida glabrata with a poor susceptibility to polyenes, as determined by disk diffusion method and confirmed by determination of MIC, was recovered from a patient treated with amphotericin B. Quantitative analysis of sterols revealed a lack of ergosterol and an accumulation of late sterol intermediates, suggesting a defect in the final steps of the ergosterol pathway. Sequencing of CgERG11, CgERG6, CgERG5, and CgERG4 genes revealed exclusively a unique missense mutation in CgERG6 leading to the substitution of a cysteine by a phenylalanine in the corresponding protein. In addition, real-time reverse transcription-PCR demonstrated an overexpression of genes encoding enzymes involved in late steps of the ergosterol pathway. Moreover, this isolate exhibited a pseudohyphal growth whatever the culture medium used, and ultrastructural changes of the cell wall of blastoconidia were seen consisting in a thinner inner layer. Cell wall alterations were also suggested by the higher susceptibility of growing cells to Calcofluor white. Additionally, complementation of this isolate with a wild-type copy of the CgERG6 gene restored susceptibility to polyenes and a classical morphology. Together, these results demonstrated that mutation in the CgERG6 gene may lead to a reduced susceptibility to polyenes and to a pseudohyphal growth due to the subsequent changes in sterol content of the plasma membrane.

  11. Molecular Characterization of TMPRSS2-ERG Gene Fusion in the NCI-H660 Prostate Cancer Cell Line: A New Perspective for an Old Model

    Directory of Open Access Journals (Sweden)

    Kirsten D. Mertz

    2007-03-01

    Full Text Available Recent studies have established that a significant fraction of prostate cancers harbor a signature gene fusion between the 5' region of androgen-regulated TMPRSS2 and an ETS family transcription factor, most commonly ERG. Studies on the molecular mechanisms and functional consequences of this important chromosomal rearrangement are currently limited to the VCaP cell line derived from a vertebral bone metastasis of a hormone-refractory prostate tumor. Here we report on the NCI-H660 cell line, derived from a metastasic site of an extrapulmonary small cell carcinoma arising from the prostate. NCI-H660 harbors TMPRSS2-ERG fusion with a homozygous intronic deletion between TMPRSS2 and ERG. We demonstrate this by real-time quantitative polymerase chain reaction, a two-stage dual-color interphase fluorescence in situ hybridization (FISH assay testing for TMPRSS2 and ERG break-aparts, and single-nucleotide polymorphism oligonucleotide arrays. The deletion is consistent with the common intronic deletion found on chromosome 21q22.2-3 in human prostate cancer samples. We demonstrate the physical juxtaposition of TMPRSS2 and ERG on the DNA level by fiber FISH. The androgen receptor-negative NCI-H660 cell line expresses ERG in an androgen-independent fashion. This in vitro model system has the potential to provide important pathobiologic insights into TMPRSS2-ERG fusion prostate cancer.

  12. Fault features and enrichment laws of narrow-channel distal tight sandstone gas reservoirs: A case study of the Jurassic Shaximiao Fm gas reservoir in the Zhongjiang Gas Field, Sichuan Basin

    Directory of Open Access Journals (Sweden)

    Zhongping Li

    2016-11-01

    Full Text Available The Jurassic Shaximiao Fm gas reservoir in the Zhongjiang Gas Field, Sichuan Basin, is the main base of Sinopec Southwest Oil & Gas Company for gas reserves and production increase during the 12th Five-Year Plan. However, its natural gas exploration and development process was restricted severely, since the exploration wells cannot be deployed effectively in this area based on the previous gas accumulation and enrichment pattern of “hydrocarbon source fault + channel sand body + local structure”. In this paper, the regional fault features and the gas accumulation and enrichment laws were discussed by analyzing the factors like fault evolution, fault elements, fault-sand body configuration (the configuration relationship between hydrocarbon source faults and channel sand bodies, trap types, and reservoir anatomy. It is concluded that the accumulation and enrichment of the Shaximiao Fm gas reservoir in this area is controlled by three factors, i.e., hydrocarbon source, sedimentary facies and structural position. It follows the accumulation laws of source controlling region, facies controlling zone and position controlling reservoir, which means deep source and shallow accumulation, fault-sand body conductivity, multiphase channel, differential accumulation, adjusted enrichment and gas enrichment at sweet spots. A good configuration relationship between hydrocarbon source faults and channel sand bodies is the basic condition for the formation of gas reservoirs. Natural gas accumulated preferentially in the structures or positions with good fault-sand body configuration. Gas reservoirs can also be formed in the monoclinal structures which were formed after the late structural adjustment. In the zones supported by multiple faults or near the crush zones, no gas accumulation occurs, but water is dominantly produced. The gas-bearing potential is low in the area with undeveloped faults or being 30 km away from the hydrocarbon source faults. So

  13. The solution structure of the S4-S5 linker of the hERG potassium channel.

    Science.gov (United States)

    Gayen, Shovanlal; Li, Qingxin; Kang, CongBao

    2012-02-01

    The human ether-à-go-go related gene (hERG) encodes a protein that forms a voltage-gated potassium channel and plays an important role in the heart by controlling the rapid delayed rectifier K(+) current (I(Kr)). The S4-S5 linker was shown to be important for the gating of the hERG channel. Nuclear magnetic resonance study showed that a peptide derived from the S4-S5 linker had no well-ordered structure in aqueous solution and adopted a 3(10) -helix (E544-Y545-G546) structure in detergent micelles. The existence of an amphipathic helix was confirmed, which may be important for interaction with cell membrane. Close contact between side chains of residues R541 and E544 was observed, which may be important for its regulation of channel gating.

  14. Computational analysis of the effects of the hERG channel opener NS1643 in a human ventricular cell model

    DEFF Research Database (Denmark)

    Peitersen, Torben; Grunnet, Morten; Benson, Alan P

    2008-01-01

    BACKGROUND: Dysfunction or pharmacologic inhibition of repolarizing cardiac ionic currents can lead to fatal arrhythmias. The hERG potassium channel underlies the repolarizing current I(Kr), and mutations therein can produce both long and short QT syndromes (LQT2 and SQT1). We previously reported...... on the diphenylurea compound NS1643, which acts on hERG channels in two distinct ways: by increasing overall conductance and by shifting the inactivation curve in the depolarized direction. OBJECTIVE: The purpose of this study was to determine which of the two components contributes more to the antiarrhythmic effects...... of NS1643 under normokalemic and hypokalemic conditions. METHODS: The study consisted of mathematical simulation of action potentials in a human ventricular ionic cell model in single cell and string of 100 cells. RESULTS: Regardless of external potassium concentration or diastolic interval used, NS1643...

  15. hERG blocking potential of acids and zwitterions characterized by three thresholds for acidity, size and reactivity

    DEFF Research Database (Denmark)

    Nikolov, Nikolai Georgiev; Dybdahl, Marianne; Jonsdottir, Svava Osk

    2014-01-01

    acidic non-blockers have not been fully elucidated. We propose a rule for prediction of hERG blocking by acids and zwitterionic ampholytes based on thresholds for only three descriptors related to acidity, size and reactivity. The training set of 153 acids and zwitterionic ampholytes was predicted...... with a concordance of 91% by a decision tree based on the rule. Two external validations were performed with sets of 35 and 48 observations, respectively, both showing concordances of 91%. In addition, a global QSAR model of hERG blocking was constructed based on a large diverse training set of 1374 chemicals...... covering all ionization classes, externally validated showing high predictivity and compared to the decision tree. The decision tree was found to be superior for the acids and zwitterionic ampholytes classes....

  16. Accelerated molecular evolution of insect orthologues of ERG28/C14orf1: a link with ecdysteroid metabolism?

    Indian Academy of Sciences (India)

    Reiner A. Veitia; Laurence D. Hurst

    2001-04-01

    We have analysed the evolution of ERG28/C14orf1, a gene coding for a protein involved in sterol biosynthesis. While primary sequence of the protein is well conserved in all organisms able to synthesize sterols de novo, strong divergence is noticed in insects, which are cholesterol auxotrophs. In spite of this virtual acceleration, our analysis suggests that the insect orthologues are evolving today at rates similar to those of the remaining members of the family. A plausible way to explain this acceleration and subsequent stabilization is that Erg28 plays a role in at least two different pathways. Discontinuation of the cholesterogenesis pathway in insects allowed the protein to evolve as much as the function in the other pathway was not compromised.

  17. Regulation of the human ether-a-go-go-related gene (hERG) potassium channel by Nedd4 family interacting proteins (Ndfips).

    Science.gov (United States)

    Kang, Yudi; Guo, Jun; Yang, Tonghua; Li, Wentao; Zhang, Shetuan

    2015-11-15

    The cardiac electrical disorder long QT syndrome (LQTS) pre-disposes affected individuals to ventricular arrhythmias and sudden death. Dysfunction of the human ether-a-go-go-related gene (hERG)-encoded rapidly activating delayed rectifier K(+) channel (IKr) is a major cause of LQTS. The expression of hERG channels is controlled by anterograde trafficking of newly synthesized channels to and retrograde degradation of existing channels from the plasma membrane. We have previously shown that the E3 ubiquitin (Ub) ligase Nedd4-2 (neural precursor cell expressed developmentally down-regulated protein 4-2) targets the PY motif of hERG channels to initiate channel degradation. Although both immature and mature hERG channels contain the PY motif, Nedd4-2 selectively mediates the degradation of mature hERG channels. In the present study, we demonstrate that Nedd4-2 is directed to specific cellular compartments by the Nedd4 family interacting proteins, Nedd4 family-interacting protein 1 (Ndfip1) and Ndfip2. Ndfip1 is primarily localized in the Golgi apparatus where it recruits Nedd4-2 to mediate the degradation of mature hERG proteins during channel trafficking to the plasma membrane. Although Ndfip2 directs Nedd4-2 to the Golgi apparatus, it also recruits Nedd4-2 to the multivesicular bodies (MVBs), which may impair MVB function and impede the degradation of mature hERG proteins mediated by Nedd4-2. These findings extend our understanding of hERG channel regulation and provide information which may be useful for the rescue of impaired hERG function in LQTS.

  18. Investigation of ERG11 gene expression among fluconazole-resistant Candida albicans: first report from an Iranian referral paediatric hospital.

    Science.gov (United States)

    Teymuri, M; Mamishi, S; Pourakbari, B; Mahmoudi, S; Ashtiani, M T; Sadeghi, R H; Yadegari, M H

    2015-01-01

    The multiplicity of mechanisms of resistance to azole antifungal agents has been described. As fluconazole-resistant clinical Candida albicans isolates that constitutively over-express ERG11 have been identified in previous studies, the aim of this study is to investigate this molecular mechanism involved in fluconazole resistance of C. albicans clinical isolates. Fluconazole susceptibility testing was carried out on clinical isolates of Candida spp. obtained from hospitalised children in an Iranian referral children's hospital. A polymerase chain reaction (PCR)-restriction fragment length polymorphism (RFLP) technique was used to differentiate Candida spp. The resistant C. albicans isolates were subjected to RT-qPCR using primers that identify ERG11 gene expression. Of the 142 Candida spp. isolates studied, C. albicans was the most predominant isolate, occurring in 68.3% (97/142) of the patients. According to the CLSI method, the majority of the C. albicans isolates (91.7%, 89/97), categorised as susceptible (minimum inhibitory concentration [MIC] ≤8 μg/mL), five isolates were considered resistant (MIC ≤64 μg/mL) and three had dose-dependent susceptibility (MIC = 8.16-32 μg/mL). The ERG11 gene in the five fluconazole-resistant C. albicans isolates was upregulated 4.15-5.84-fold relative to the ATCC 10231 control strain. In this study, the expression of ERG11 was upregulated in all the fluconazole-resistant C. albicans isolates. There are limited data on the antifungal susceptibility of Candida spp. as well as the molecular mechanism of azole resistance in Iran, especially for isolates causing infections in children. Therefore, the surveillance of antifungal resistance patterns and investigation of other mechanisms of azole resistance in all Candida spp. isolates is recommended.

  19. Adsorption of dyes on Sahara desert sand.

    Science.gov (United States)

    Varlikli, Canan; Bekiari, Vlasoula; Kus, Mahmut; Boduroglu, Numan; Oner, Ilker; Lianos, Panagiotis; Lyberatos, Gerasimos; Icli, Siddik

    2009-10-15

    Sahara desert sand (SaDeS) was employed as a mineral sorbent for retaining organic dyes from aqueous solutions. Natural sand has demonstrated a strong affinity for organic dyes but significantly lost its adsorption capacity when it was washed with water. Therefore, characterization of both natural and water washed sand was performed by XRD, BET, SEM and FTIR techniques. It was found that water-soluble kyanite, which is detected in natural sand, is the dominant factor affecting adsorbance of cationic dyes. The sand adsorbs over 75% of cationic dyes but less than 21% for anionic ones. Among the dyes studied, Methylene Blue (MB) demonstrated the strongest affinity for Sahara desert sand (Q(e)=11.98 mg/g, for initial dye solution concentration 3.5 x 10(-5)mol/L). The effects of initial dye concentration, the amount of the adsorbent, the temperature and the pH of the solution on adsorption capacity were tested by using Methylene Blue as model dye. Pseudo-first-order, pseudo-second-order and intraparticle diffusion models were applied. It was concluded that adsorption of Methylene Blue on Sahara desert sand followed pseudo-second order kinetics. Gibbs free energy, enthalpy change and entropy change were calculated and found -6411 J/mol, -30360 J/mol and -76.58 J/mol K, respectively. These values indicate that the adsorption is an exothermic process and has a spontaneous nature at low temperatures.

  20. Critical state of sand matrix soils.

    Science.gov (United States)

    Marto, Aminaton; Tan, Choy Soon; Makhtar, Ahmad Mahir; Kung Leong, Tiong

    2014-01-01

    The Critical State Soil Mechanic (CSSM) is a globally recognised framework while the critical states for sand and clay are both well established. Nevertheless, the development of the critical state of sand matrix soils is lacking. This paper discusses the development of critical state lines and corresponding critical state parameters for the investigated material, sand matrix soils using sand-kaolin mixtures. The output of this paper can be used as an interpretation framework for the research on liquefaction susceptibility of sand matrix soils in the future. The strain controlled triaxial test apparatus was used to provide the monotonic loading onto the reconstituted soil specimens. All tested soils were subjected to isotropic consolidation and sheared under undrained condition until critical state was ascertain. Based on the results of 32 test specimens, the critical state lines for eight different sand matrix soils were developed together with the corresponding values of critical state parameters, M, λ, and Γ. The range of the value of M, λ, and Γ is 0.803-0.998, 0.144-0.248, and 1.727-2.279, respectively. These values are comparable to the critical state parameters of river sand and kaolin clay. However, the relationship between fines percentages and these critical state parameters is too scattered to be correlated.

  1. Sand Flies and Their Control Methods.

    Science.gov (United States)

    Çetin, Hüseyin; Özbel, Yusuf

    2017-06-01

    The main aim of managing arthropod vectors that carry the disease agents is interrupting the infection cycle. Therefore, the management of the disease implies that all precautions related to all elements (i.e., human, arthropod vector, and reservoir) in the infection cycle need to be taken. There are important points that need to be considered while dealing with sand flies (Diptera: Psychodidae: Phlebotominae), which in many regions worldwide, particularly in tropical and subtropical areas, are vectors of diseases such as leishmaniasis and sand fly fever and are the arthropods of the infection cycle. Because the larval control of the sand flies is very difficult and almost impossible, the management is mainly conducted for the adults. The most effective strategy for reducing both sand fly fever and leishmaniasis is managing sand flies, particularly in areas where humans are located. In this review, the morphology, biology, and taxonomy of sand flies; the integrated fighting and management methods such as insecticide-impregnated bed nets and use of curtains, zooprophylaxis, indoor and outdoor residual applications, larvicides, repellents, and insecticide-impregnated dog collars; and data regarding many issues such as insecticide resistance in sand flies have been emphasized on in the review.

  2. Critical State of Sand Matrix Soils

    Directory of Open Access Journals (Sweden)

    Aminaton Marto

    2014-01-01

    Full Text Available The Critical State Soil Mechanic (CSSM is a globally recognised framework while the critical states for sand and clay are both well established. Nevertheless, the development of the critical state of sand matrix soils is lacking. This paper discusses the development of critical state lines and corresponding critical state parameters for the investigated material, sand matrix soils using sand-kaolin mixtures. The output of this paper can be used as an interpretation framework for the research on liquefaction susceptibility of sand matrix soils in the future. The strain controlled triaxial test apparatus was used to provide the monotonic loading onto the reconstituted soil specimens. All tested soils were subjected to isotropic consolidation and sheared under undrained condition until critical state was ascertain. Based on the results of 32 test specimens, the critical state lines for eight different sand matrix soils were developed together with the corresponding values of critical state parameters, M, λ, and Γ. The range of the value of M, λ, and Γ is 0.803–0.998, 0.144–0.248, and 1.727–2.279, respectively. These values are comparable to the critical state parameters of river sand and kaolin clay. However, the relationship between fines percentages and these critical state parameters is too scattered to be correlated.

  3. Obesity and Prostate Cancer Risk According to Tumor TMPRSS2:ERG Gene Fusion Status.

    Science.gov (United States)

    Egbers, Lieke; Luedeke, Manuel; Rinckleb, Antje; Kolb, Suzanne; Wright, Jonathan L; Maier, Christiane; Neuhouser, Marian L; Stanford, Janet L

    2015-05-01

    The T2E gene fusion, formed by fusion of the transmembrane protease, serine 2, gene (TMPRSS2) with the erythroblast transformation-specific (ETS)-related gene (ERG), is found in approximately 50% of prostate cancers and may characterize distinct molecular subtypes of prostate cancer with different etiologies. We investigated the relationship between body mass index (BMI; weight (kg)/height (m)(2)) and prostate cancer risk by T2E status. Study participants were residents of King County, Washington, recruited for 2 population-based case-control studies conducted in 1993-1996 and 2002-2005. Tumor T2E status was determined for 563 prostate cancer patients who underwent radical prostatectomy. Information on weight, height, and covariables was obtained through in-person interviews. We performed polytomous logistic regression to calculate odds ratios and 95% confidence intervals for T2E-positive and -negative prostate cancer. Comparing the highest BMI quartile with the lowest, inverse associations were observed between recent (≥29.7 vs. prostate cancer. No significant associations were seen for men with T2E-negative tumors. This study provides evidence that obesity is specifically associated with reduced risk of developing androgen-responsive T2E fusion-positive tumors. The altered steroid hormone profile in obese men may contribute to this inverse association. © The Author 2015. Published by Oxford University Press on behalf of the Johns Hopkins Bloomberg School of Public Health. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  4. 前列腺癌组织中 ERG 蛋白的表达变化及意义%Expression changes and significance of ERG protein in prostate cancer

    Institute of Scientific and Technical Information of China (English)

    景志亮; 陈永华; 曹军; 赵颖海; 柳建军

    2016-01-01

    目的:观察前列腺癌( PCa)组织中ERG蛋白的表达变化并探讨意义。方法选择144例PCa和100例良性前列腺增生( BPH)患者,取其前列腺组织,采用免疫组化MaxVision法检测ERG蛋白,并分析其与相关临床病理特征的关系。结果 PCa及BPH组织中ERG蛋白的阳性表达率分别为25.0%和0,两者比较,P<0.01;PCa组织中ERG蛋白表达与患者的年龄、术前前列腺特异性抗原值及远处转移无关(P均>0.05),与Gleason 评分呈负相关(r=-0.175,P<0.05),Gleason评分≤7分组ERG蛋白表达率高于Gleason评分>7分组(P<0.05)。结论PCa患者前列腺癌组织中ERG蛋白表达升高,ERG蛋白的检测可能有助于PCa患者的鉴别诊断及病理分级。%Objective To investigate the expression changes and significance of ERG protein in the prostate cancer ( PCa) tissues.Methods The prostate tissues from 144 patients with PCa and 100 patients with benign prostatic hyperpla-sia ( BPH) were selected.The expression of ERG protein was detected by immunohistochemical MaxVision method, and their relationships with clinicopathological parameters were analyzed.Results The positive expression rates of ERG pro-tein in the PCa and BPH tissues were 25.0%and 0, respectively (P0.05), and was negatively correlated with Gleason score (r=-0.175, P7 group (P<0.05).Conclusion The expression of ERG pro-tein in the prostate cancer tissues of PCa patients is increased, and the ERG protein detection may provide a reference for the differential diagnosis and pathological grading.

  5. Jurassic and Cretaceous clays of the northern and central North Sea hydrocarbon reservoirs reviewed

    Energy Technology Data Exchange (ETDEWEB)

    Wilkinson, M.; Haszeldine, R.S.; Fallick, A.E.

    2006-03-15

    illite occurs almost ubiquitously within the clastic sediments of the North Sea. An early pore-lining phase has been interpreted as both infiltrated clastic clay, and as an early diagenetic phase. Early clays may have been quite smectite-rich illites, or even discrete smectites. Later, fibrous illite is undoubtedly neoformed, and can degrade reservoir quality significantly. Both within sandstones and shales, there is an apparent increase in the K content deeper than 4 km of burial, which could be due to dilution of the early smectite-rich phase by new growth illite, or to the progressive illitization of existing I-S. Much of the 'illite' that has been dated by the K-Ar method may therefore actually be I-S. The factors that control the formation of fibrous illite are only poorly known, though temperature must play a role. Illite growth has been proposed for almost the entire range of diagenetic temperatures (e.g. 15-20{sup o}C, Brent Group; 35-40{sup o}C, Oxfordian Sand, Inner Moray Firth; 50-90{sup o}C, Brae formation; 100-110{sup o}C, Brent Group; 130-140{sup o}C, Haltenbanken). It seems unlikely that there is a threshold temperature below which illite growth is impossible (or too slow to be significant), though this is a recurring hypothesis in the literature. Instead, illite growth seems to be an event, commonly triggered by oil emplacement or another change in the physiochemical conditions within the sandstone, such as an episode of overpressure release. Hence fibrous illite can grow at any temperature encountered during diagenesis. Although there is an extensive dataset of K-Ar ages of authigenic illites from the Jurassic of the North Sea, there is no consensus as to whether the data are meaningful, or whether the purified illite samples prepared for analysis are so contaminated with detrital phases as to render the age data meaningless. At present it is unclear about how to resolve this problem, though there is some indication that chemical micro

  6. Invasive plants on disturbed Korean sand dunes

    Science.gov (United States)

    Kim, Kee Dae

    2005-01-01

    The sand dunes in coastal regions of South Korea are important ecosystems because of their small size, the rare species found in this habitat, and the beautiful landscapes they create. This study investigated the current vegetative status of sand dunes on three representative coasts of the Korean peninsula, and on the coasts of Cheju Island, and assessed the conditions caused by invasive plants. The relationships between the degree of invasion and 14 environmental variables were studied. Plots of sand dunes along line transects perpendicular to the coastal lines were established to estimate vegetative species coverage. TWINSPAN (Two-Way Indicator Species Analysis), CCA (Canonical Correspondence Analysis), and DCCA (Detrended Canonical Correspondence Analysis) were performed to classify communities on sand dunes and assess species composition variation. Carex kobomugi, Elymus mollis, and Vitex rotundifolia were found to be the dominant species plotted on the east, the west, and the peripheral coasts of Cheju Island, respectively. Vegetation on the south coast was totally extinct. The 19 communities, including representative C. kobomugi, C. kobomugi- Ixeris repens, C. kobomugi- Oenothera biennis, E. mollis, Lolium multiflorum- Calystegia soldanella, and V. rotundifolia- C. kobomugi, were all classified according to TWINSPAN. Oenothera biennis and L. multiflorum were exotics observed within these native communities. CCA showed that invasive native and exotic species distribution was segregated significantly, according to disturbance level, exotic species number, gravel, sand and silt contents, as well as vegetation size. It further revealed that human disturbance can strongly favor the settlement of invasive and exotic species. Restoration options to reduce exotic plants in the South Korean sand dune areas were found to be the introduction of native plant species from one sand dune into other sand dune areas, prohibition of building and the introduction of exotic

  7. Optimization of piperidin-4-yl-urea-containing melanin-concentrating hormone receptor 1 (MCH-R1) antagonists: Reducing hERG-associated liabilities.

    Science.gov (United States)

    Berglund, Susanne; Egner, Bryan J; Gradén, Henrik; Gradén, Joakim; Morgan, David G A; Inghardt, Tord; Giordanetto, Fabrizio

    2009-08-01

    The discovery and optimization of piperidin-4-yl-urea derivatives as MCH-R1 antagonists is herein described. Previous work around the piperidin-4-yl-amides led to the discovery of potent MCH-R1 antagonists. However, high affinity towards the hERG potassium channel proved to be an issue. Different strategies to increase hERG selectivity were implemented and resulted in the identification of piperidin-4-yl-urea compounds as potent MCH-R1 antagonists with minimized hERG inhibition.

  8. Mutations within the S4-S5 linker alter voltage sensor constraints in hERG K+ channels.

    Science.gov (United States)

    Van Slyke, Aaron C; Rezazadeh, Saman; Snopkowski, Mischa; Shi, Patrick; Allard, Charlene R; Claydon, Tom W

    2010-11-03

    Human ether-a-go-go related gene (hERG) channel gating is associated with slow activation, yet the mechanistic basis for this is unclear. Here, we examine the effects of mutation of a unique glycine residue (G546) in the S4-S5 linker on voltage sensor movement and its coupling to pore gating. Substitution of G546 with residues possessing different physicochemical properties shifted activation gating by ∼-50 mV (with the exception of G546C). With the activation shift taken into account, the time constant of activation was also accelerated, suggesting a stabilization of the closed state by ∼1.6-4.3 kcal/mol (the energy equivalent of one to two hydrogen bonds). Predictions of the α-helical content of the S4-S5 linker suggest that the presence of G546 in wild-type hERG provides flexibility to the helix. Deactivation gating was affected differentially by the G546 substitutions. G546V induced a pronounced slow component of closing that was voltage-independent. Fluorescence measurements of voltage sensor movement in G546V revealed a slow component of voltage sensor return that was uncoupled from charge movement, suggesting a direct effect of the mutation on voltage sensor movement. These data suggest that G546 plays a critical role in channel gating and that hERG channel closing involves at least two independently modifiable reconfigurations of the voltage sensor.

  9. A taxonomic review of the Late Jurassic eucryptodiran turtles from the Jura Mountains (Switzerland and France

    Directory of Open Access Journals (Sweden)

    Jérémy Anquetin

    2014-05-01

    Full Text Available Background. Eucryptodiran turtles from the Late Jurassic (mainly Kimmeridgian deposits of the Jura Mountains (Switzerland and France are among the earliest named species traditionally referred to the Plesiochelyidae, Thalassemydidae, and Eurysternidae. As such, they are a reference for the study of Late Jurassic eucryptodires at the European scale. Fifteen species and four genera have been typified based on material from the Late Jurassic of the Jura Mountains. In the past 50 years, diverging taxonomic reassessments have been proposed for these turtles with little agreement in sight. In addition, there has been a shift of focus from shell to cranial anatomy in the past forty years, although most of these species are only represented by shell material. As a result, the taxonomic status of many of these 15 species remains ambiguous, which prevents comprehensive comparison of Late Jurassic turtle assemblages throughout Europe and hinders description of new discoveries, such as the new assemblage recently unearthed in the vicinity of Porrentruy, Switzerland.Methods. An exhaustive reassessment of the available material provides new insights into the comparative anatomy of these turtles. The taxonomic status of each of the 15 species typified based on material from the Late Jurassic of the Jura Mountains is evaluated. New diagnoses and general descriptions are provided for each valid taxon.Results. Six out of the 15 available species names are recognized as valid: Plesiochelys etalloni, Craspedochelys picteti, Craspedochelys jaccardi, Tropidemys langii, Thalassemys hugii, and ‘Thalassemys’ moseri. The intraspecific variability of the shell of P. etalloni is discussed based on a sample of about 30 relatively complete specimens from Solothurn, Switzerland. New characters are proposed to differentiate P. etalloni, C. picteti, and C. jaccardi, therefore rejecting the previously proposed synonymy of these forms. Based partly on previously undescribed

  10. Tango in the Mid-Jurassic: 10,000-Yr Geomagnetic Field Reversals

    Science.gov (United States)

    Steiner, M.

    2001-12-01

    A continuous magnetostratigraphic signature of Layer 2A from Jurassic Quiet Zone (JQZ) oceanic crust now is known from two separate paleo-magnetic data sets. Measurement/demagnetization along the length of the entire core at 5-cm intervals generated ~100,000 data points, whereas a suite of 472 discrete samples also were taken from throughout the core. Both data sets display the same magnetization pattern, a series of repeated sinusoidal inclination changes downhole. Six inter-vals of maximum inclination (three positive, three negative) are obser-ved. Maximum inclination intervals of +/-40° are separated by regions of smoothly varying intermediate inclination values. Despite lack of azmuithal orientation of the core, downhole magnetic logging (Larson et al., in prep.) shows full ~360° directional change in the magnetization vector. Therefore, the maximum inclination regions represent polarity intervals of the geomagnetic field, and six polarity intervals in stacked sequence are contained in the upper 400 m thickness of Layer 2A at this site. The time duration spanned by these six reversals was estimated from recent seismic studies of young ocean crustal construction on the East Pacific Rise (EPR). Estimates of completion of construction of Layer 2A within 1-3 km from the rise crest and typical EPR half-spreading rates of 5-8 cm/yr suggest that the studied 400 m of ocean crust represents 37,000-60,000 years. The fast construction of EPR crust implies that the Middle Jurassic geomagnetic field was reversing at a phenomenal rate of 5000-10,000 years. These data establish that the `quiet' signature in the oldest portion of the lineated magnetic anomaly patterns in the ocean crust is due to exceedingly rapid reversals of the geomagnetic field, because succes-sive, superposed opposite-polarity magnetic signatures will essentially cancel one another out at the sea surface. The width of the 'quiet' magnetic signature in the western Pacific Ocean implies that the 5000

  11. TRANSITION FROM CARBONATE PLATFORM TO PELAGIC DEPOSITION (MID JURASSIC- LATE CRETACEOUS, VOURINOS MASSIF, NORTHERN GREECE

    Directory of Open Access Journals (Sweden)

    NICOLAOS CARRAS

    2004-03-01

    Full Text Available A Jurassic- Cretaceous carbonate succession crops out along the Zyghosti Rema, Kozani (Northern Greece. The substratum consists of the ophiolitic succession of the Vourinos Massif (Pelagonian Domain: serpentinites tectonically overlain by basalts, with thin lenses of radiolarian cherts of middle Bathonian age. The contact with the overlying Jurassic limestones is tectonic. Eight informal units have been distinguished within the Mesozoic limestones, from the base upwards. (A bioclastic, intraclastic and oolitic packstone (Callovian- Oxfordian. (B bioclastic packstone and coral boundstone (Oxfordian . (C bioclastic and oncoidal wackestone with Clypeina jurassica (Oxfordian- Upper Kimmeridgian. (D (Upper Kimmeridgian- Portlandian: oncoidal packstone and rudstone (facies D1; intraclastic and bioclastic grainstone and packstone (facies D2; neptunian dykes with intraclastic and bioclastic wackestone and packstone filling (facies D3; neptunian dykes with Fe-Mn rich laterite filling and with pink silty filling of early Late Cretaceous age. An unconformity surface, due to emersion and erosion of the platform during the latest Jurassic- Early Cretaceous, is overlain by (E intraclastic, bioclastic packstone and grainstone (Cenomanian. (F massive body of debrites with coral, echinoderm, algae and rudist large clasts (facies F1 (Cenomanian; turbiditic beds of bioclastic, intraclastic and lithoclastic rudstone and grainstone (facies F2. (G thin bedded bioclastic mudstone and wackestone with planktonic foraminifers and radiolarians, alternating with turbiditic beds of bioclastic, intraclastic packstone and rudstone and with conglomeratic levels and slumped beds of the previous turbidites (upper Santonian- lower Campanian. (H: bioclastic packstone with planktonic foraminifers (facies H1 (lower Campanian - ?Maastrichtian; amalgamated turbiditic beds of bioclastic wackestone and packstone with planktonic foraminifers (facies H2; turbiditic beds of bioclastic

  12. Formation mechanism of cracks in saturated sand

    Institute of Scientific and Technical Information of China (English)

    Xiaobing Lu; Zhemin Zheng; Yongren Wu

    2006-01-01

    The formation mechanism of "water film" (or crack) in saturated sand is analyzed theoretically and numerically.The theoretical analysis shows that there will be no stable "water film" in the saturated sand if the strength of the skeleton is zero and no positions are choked.It is shown by numerical simulation that stable water films initiate and grow if the choking state keeps unchanged once the fluid velocities decrease to zero in the liquefied sand column.The developments of "water film" based on the model presented in this paper are compared with experimental results.

  13. Lund Sand No 0:part 2

    OpenAIRE

    Ibsen, Lars Bo; Jakobsen, Finn Rosendal

    1996-01-01

    During the last 15 years the Geotechnical Engineering Group (GEG) at Aalborg University has performed triaxial tests with a sand called Lund No 0. Lund No 0 is a graded sand from a gravel pit near Horsens in Denmark. For the classification of the sand the following tests have been performed: Sieve test, Grain density, ds, Maximum, emax, and minimum, emin, void ratio. The strength parameters of Lund No 0 are detennined by some drained and undrained triaxial tests in the Danish Triaxial Cell. T...

  14. Lund Sand No 0:part 1

    OpenAIRE

    Ibsen, Lars Bo; Jakobsen, Finn Rosendal

    1996-01-01

    During the last 15 years the Geotechnical Engineering Group (GEG) at Aalborg University has performed triaxial tests with a sand called Lund No 0. Lund No 0 is a graded sand from a gravel pit near Horsens in Denmark. For the classification of the sand the following tests have been performed: Sieve test, Grain density, ds, Maximum, emax, and minimum, emin, void ratio. The strength parameters of Lund No 0 are detennined by some drained and undrained triaxial tests in the Danish Triaxial Cell. T...

  15. Biodegradable materials as foundry moulding sands binders

    Directory of Open Access Journals (Sweden)

    K. Major - Gabryś

    2015-07-01

    Full Text Available The aim of this article is to show the possibility of using biodegradable materials as part of the composition of foundry moulding and core sand binders. Research shows that moulding sands with biodegradable materials selected as binders are not only less toxic but are also better suited to mechanical reclamation than moulding sands with phenol-furfuryl resin. The use of biodegradable materials as additives to typical synthetic resins can result in their decreased toxicity and improved ability to reclamation as well as in accelerated biodegradation of binding material leftovers of mechanical reclamation.

  16. Watching Faults Grow in Sand

    Science.gov (United States)

    Cooke, M. L.

    2015-12-01

    Accretionary sandbox experiments provide a rich environment for investigating the processes of fault development. These experiments engage students because 1) they enable direct observation of fault growth, which is impossible in the crust (type 1 physical model), 2) they are not only representational but can also be manipulated (type 2 physical model), 3) they can be used to test hypotheses (type 3 physical model) and 4) they resemble experiments performed by structural geology researchers around the world. The structural geology courses at UMass Amherst utilize a series of accretionary sandboxes experiments where students first watch a video of an experiment and then perform a group experiment. The experiments motivate discussions of what conditions they would change and what outcomes they would expect from these changes; hypothesis development. These discussions inevitably lead to calculations of the scaling relationships between model and crustal fault growth and provide insight into the crustal processes represented within the dry sand. Sketching of the experiments has been shown to be a very effective assessment method as the students reveal which features they are analyzing. Another approach used at UMass is to set up a forensic experiment. The experiment is set up with spatially varying basal friction before the meeting and students must figure out what the basal conditions are through the experiment. This experiment leads to discussions of equilibrium and force balance within the accretionary wedge. Displacement fields can be captured throughout the experiment using inexpensive digital image correlation techniques to foster quantitative analysis of the experiments.

  17. Paleomagnetism of Jurassic and Cretaceous rocks bounding the Santa Marta massif - NW corner of Colombia, South America

    Science.gov (United States)

    Bayona, G.; Jimenez, G.; Silva, C.

    2008-12-01

    The Santa Marta massif (SMM) is a complex terrain located in the NW margin of South America, bounded by the left-lateral Santa Marta fault to the west and the right-lateral Oca fault to the north. The SMM is cored by Precambrian metamorphic and Jurassic intrusive rocks, whereas along the SE flank crop out Jurassic volcanic rocks overlying unconformably by Limestones of Cretaceous age. Paleomagnetic analysis of 30 sites in the Jurassic and Cretaceous units in the SE region uncovered two principal magnetic components. The component "a", isolated in low coercivity and temperatures, has declinations to the north and moderate positive inclinations representing the actual field direction (n=11, D=347.6 I=23 K=30.77, a95=8.4). The component "c", with high coercivity and temperatures, has two orientations. After two-step tilt corrections, the first has northward declination and positive, low inclination (n=9, D=12, I=3, K=18.99, a95=12.1); this direction was uncovered in Cretaceous and some Jurassic rocks near to the Santa Marta fault, and we consider it as a Cretaceous component. The second direction was uncovered only in Jurassic rocks and has NNE declinations with negative-low inclinations (n=9, D=11.3 I=-14.3 K=12.36, a95=15.2); this direction represents a Jurassic component. Jurassic and Cretaceous directions isolated in areas faraway of the Santa Marta Fault suggest slight clockwise vertical-axes rotation. The Jurassic component suggests northward translation of the SMM from Paleolatitude -7.3, to near the magnetic equador in the Cretaceous, and to northern latitudes in the Cenozoic.

  18. MIDDLE JURASSIC-LOWER CRETACEOUS BIOSTRATIGRAPHY IN THE CENTRAL PONTIDES (TURKEY): REMARKS ON PALEOGEOGRAPHY AND TECTONIC EVOLUTION

    OpenAIRE

    BORA ROJAY; DEMIR ALTINER

    1998-01-01

    The deposition of Jurassic-Lower Cretaceous carbonates in the Pontides was controlled mainly by the evolution of an Atlantic-type continental margin in the Tethys. The study of several stratigraphic sections from allochthonous slices and blocks of the North Anatolian Ophiolitic Melange provided insight into the Middle Jurassic-Early Cretaceous paleogeographic evolution of the Central Pontide Belt. The Callovian-Aptian successions span the Globuligerina gr. oxfordiana, Clypeina jurassica (equi...

  19. A Remarkable New Family of Jurassic Insects (Neuroptera) with Primitive Wing Venation and Its Phylogenetic Position in Neuropterida

    OpenAIRE

    Qiang Yang; Vladimir N Makarkin; Winterton, Shaun L.; Khramov, Alexander V.; Dong Ren

    2012-01-01

    BACKGROUND: Lacewings (insect order Neuroptera), known in the fossil record since the Early Permian, were most diverse in the Mesozoic. A dramatic variety of forms ranged in that time from large butterfly-like Kalligrammatidae to minute two-winged Dipteromantispidae. PRINCIPAL FINDINGS: We describe the intriguing new neuropteran family Parakseneuridae fam. nov. with three new genera and 15 new species from the Middle Jurassic of Daohugou (Inner Mongolia, China) and the Early/Middle Jurassic o...

  20. Dinosaur tracks in Lower Jurassic coastal plain sediments (Sose Bugt Member, Rønne Formation) on Bornholm, Denmark

    DEFF Research Database (Denmark)

    Clemmensen, Lars B; Milàn, Jesper; Pedersen, Gunver K

    2014-01-01

    Fluvial palaeochannels of coastal plain sediments of the Lower Jurassic Sose Bugt Member of the Rønne Formation exposed in the coastal cliffs at Sose Bugt, Bornholm, contain abundant dinosaur or other large vertebrate tracks in the form of deformation structures exposed in vertical section...... track. Contemporary Upper Triassic – Lower Jurassic strata from southern Sweden and Poland contain a diverse track fauna, supporting our interpretation. This is the earliest evidence of dinosaur activity in Denmark....

  1. The first euthemistid damsel-dragonfly from the Middle Jurassic of China (Odonata, Epiproctophora, Isophlebioptera).

    Science.gov (United States)

    Li, Yongjun; Nel, André; Shih, Chungkun; Ren, Dong; Pang, Hong

    2013-01-01

    Sinoeuthemis daohugouensis gen. et sp. n. is the first record of the isophlebiopteran family Euthemistidae from Middle Jurassic of northeast China, while previously this family was restricted to the early Late Jurassic Kazakhstan. This new finding allows us to emend the family diagnosis with hindwing characters. This new species shows a mixture of characters alternatively present in different genera of the two families Euthemistidae and Sphenophlebiidae.

  2. Effect of Chromite-Silica Sands Characteristics on Performance of Ladle Filler Sands for Continuous Casting

    Institute of Scientific and Technical Information of China (English)

    2012-01-01

    Free opening rate is mainly determined by the performance of the ladle filler sand. High free opening rates of ladles are required in steel making to improve steel quality. Chromite ladle filler sands are one of the most widely used ladle filler sand. Several operative variables and materials characteristics affect the performance of the sands. Three sets of chromite ladle filler sands were selected and researches were focused on the sintering hehaviour and per- formance of the sands under operative conditions. The effect of particle size distribution on sintering, microstruc- ture, flowability, and permeability were presented. In all cases, the particle size varies from 0.1 to 1.5 mm corre- sponding to free flowing powders. One of the samples has higher permeability factor in comparison with others due to low particle size distribution. The other sample presents very good free opening due to its very good flowability and permeability factor.

  3. Sand Lake WMD vegetation mapping project update

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — Final report on the vegetation mapping project at Sand Lake Wetland Management District. This project is being completed by the use of SPRING software and ground...

  4. Bioaugmentation of flow-through sand filters

    DEFF Research Database (Denmark)

    Samuelsen, Elin Djurhuus

    Global applications of pesticides in agricultural production have led to the detection of trace amounts of pesticides in groundwater resources in levels exceeding the EU threshold limit for drinking water of 0.1 µg L-1. Pesticide-polluted groundwater may be remediated by inoculating waterworks sand...... for degradation performances in flow-through sand columns, with the aim of identifying a suitable inoculant strain for future environmental applications. Another aim was to identify a suitable genetic marker to monitor phenoxy acid degradation in strain Sphingobium sp. PM2. We were not able to link motility...... and biofilm formation to the strains´ ability to adhere to sand. Nevertheless, a correlation was found between cell surface hydrophobicity and adhesion and overall degradation performances in flow-through sand columns. We identified S phingobium sp. PM2 as a promising inoculant strain, displaying efficient...

  5. Petrophysical Analysis of Oil Sand in Athabasca

    Science.gov (United States)

    cheong, S.; Lee, H.

    2013-12-01

    Oil sands are the major unconventional energy sources which have great reserves in Alberta, Canada. Recovery techniques such as CSS (Cyclic Steam Stimulation) and SAGD (Steam Assisted Gravity Drainage) enabled to develop deeper bitumen about several hundred meter depth. Before applying CSS and SAGD, reservoir heterogeneity of mud barriers or shale breccias should be clarified to establish injection and production wells successfully. We conducted the integrated petro-physical analysis for oil sands deposits in Athabasca by correlating well logs with seismic data. From 33 well logs and 3D seismic, we have made P-wave impedance by recursive inversion. Target formations of our analysis were the top of Wabiskaw member. Using inverted impedance and multi-attributes, porosity volume was derived at a target depth. Porosity of time slice 375 ms ranged 20 ~ 40 % stretching porous sand body from NE to SW direction. Characteristics of porosity distribution may be useful to design optimum oil sands recovery in Athabasca.

  6. Carbon cycle: New pathways in the sand

    Science.gov (United States)

    Rao, Alexandra

    2017-01-01

    Organic carbon decomposition in anoxic marine sediments was thought to be dominated by bacteria, but experimental data and microbial culture studies now show that microalgae buried in coastal sands may also play an important role in carbon turnover.

  7. The search for a source rock for the giant Tar Sand triangle accumulation, southeastern Utah

    Science.gov (United States)

    Huntoon, J.E.; Hansley, P.L.; Naeser, N.D.

    1999-01-01

    for the White Rim oil. The most attractive potential sources for White Rim oil include beds within one or more of the following formations: the Proterozoic Chuar Group, which is present in the subsurface southwest of the Tar Sand triangle; the Mississippian Delle Phosphatic Member of the Deseret Limestone and equivalent formations, the Permian Kaibab Limestone, the Sinbad Limestone Member of the Triassic Moenkopi Formation, and the Jurassic Arapien Shale, Twin Creek Limestone, and Carmel Formation, which are present west of the Tar Sand triangle; the Pennsylvanian Paradox Formation in the Paradox basin east of the Tar Sand triangle; and the Permian Park City Formation northwest of the Tar Sand triangle. Each formation has a high total organic carbon content and is distributed over a wide enough geographic area to have provided a huge volume of oil. Source beds in all of the formations reached thermal maturity at times prior to or during the time that migration into the White Rim is interpreted to have occurred. Based on all available data, the most likely source for the Tar Sand triangle appears to be the Mississippian Delle Phosphatic Member of the Deseret Limestone. Secondary migration out of the Delle is interpreted to have occurred during the Cretaceous, during Sevier thrusting. Subsequent tertiary migration into the Tar Sand triangle reservoir is interpreted to have occurred later, during middle Tertiary Laramide deformation.

  8. Dinosaur evolution. A Jurassic ornithischian dinosaur from Siberia with both feathers and scales.

    Science.gov (United States)

    Godefroit, Pascal; Sinitsa, Sofia M; Dhouailly, Danielle; Bolotsky, Yuri L; Sizov, Alexander V; McNamara, Maria E; Benton, Michael J; Spagna, Paul

    2014-07-25

    Middle Jurassic to Early Cretaceous deposits from northeastern China have yielded varied theropod dinosaurs bearing feathers. Filamentous integumentary structures have also been described in ornithischian dinosaurs, but whether these filaments can be regarded as part of the evolutionary lineage toward feathers remains controversial. Here we describe a new basal neornithischian dinosaur from the Jurassic of Siberia with small scales around the distal hindlimb, larger imbricated scales around the tail, monofilaments around the head and the thorax, and more complex featherlike structures around the humerus, the femur, and the tibia. The discovery of these branched integumentary structures outside theropods suggests that featherlike structures coexisted with scales and were potentially widespread among the entire dinosaur clade; feathers may thus have been present in the earliest dinosaurs.

  9. An enigmatic plant-eating theropod from the Late Jurassic period of Chile.

    Science.gov (United States)

    Novas, Fernando E; Salgado, Leonardo; Suárez, Manuel; Agnolín, Federico L; Ezcurra, Martín D; Chimento, Nicolás R; de la Cruz, Rita; Isasi, Marcelo P; Vargas, Alexander O; Rubilar-Rogers, David

    2015-06-18

    Theropod dinosaurs were the dominant predators in most Mesozoic era terrestrial ecosystems. Early theropod evolution is currently interpreted as the diversification of various carnivorous and cursorial taxa, whereas the acquisition of herbivorism, together with the secondary loss of cursorial adaptations, occurred much later among advanced coelurosaurian theropods. A new, bizarre herbivorous basal tetanuran from the Upper Jurassic of Chile challenges this conception. The new dinosaur was discovered at Aysén, a fossil locality in the Upper Jurassic Toqui Formation of southern Chile (General Carrera Lake). The site yielded abundant and exquisitely preserved three-dimensional skeletons of small archosaurs. Several articulated individuals of Chilesaurus at different ontogenetic stages have been collected, as well as less abundant basal crocodyliforms, and fragmentary remains of sauropod dinosaurs (diplodocids and titanosaurians).

  10. Reduced plumage and flight ability of a new Jurassic paravian theropod from China.

    Science.gov (United States)

    Godefroit, Pascal; Demuynck, Helena; Dyke, Gareth; Hu, Dongyu; Escuillié, François; Claeys, Philippe

    2013-01-01

    Feathered theropods were diverse in the Early Cretaceous Jehol Group of western Liaoning Province, China. Recently, anatomically distinct feathered taxa have been discovered in the older Middle-Late Jurassic Tiaojishan Formation in the same region. Phylogenetic hypotheses including these specimens have challenged the pivotal position of Archaeopteryx in bird phylogeny. Here we report a basal troodontid from the Tiaojishan Formation that resembles Anchiornis, also from Jianchang County (regarded as sister-taxa). The feathers of Eosinopteryx are less extensive on the limbs and tail than Anchiornis and other deinonychosaurians. With reduced plumage and short uncurved pedal claws, Eosinopteryx would have been able to run unimpeded (with large foot remiges cursorial locomotion was likely problematic for Anchiornis). Eosinopteryx increases the known diversity of small-bodied dinosaurs in the Jurassic, shows that taxa with similar body plans could occupy different niches in the same ecosystem and suggests a more complex picture for the origin of flight.

  11. A bizarre Jurassic maniraptoran from China with elongate ribbon-like feathers.

    Science.gov (United States)

    Zhang, Fucheng; Zhou, Zhonghe; Xu, Xing; Wang, Xiaolin; Sullivan, Corwin

    2008-10-23

    Recent coelurosaurian discoveries have greatly enriched our knowledge of the transition from dinosaurs to birds, but all reported taxa close to this transition are from relatively well known coelurosaurian groups. Here we report a new basal avialan, Epidexipteryx hui gen. et sp. nov., from the Middle to Late Jurassic of Inner Mongolia, China. This new species is characterized by an unexpected combination of characters seen in several different theropod groups, particularly the Oviraptorosauria. Phylogenetic analysis shows it to be the sister taxon to Epidendrosaurus, forming a new clade at the base of Avialae. Epidexipteryx also possesses two pairs of elongate ribbon-like tail feathers, and its limbs lack contour feathers for flight. This finding shows that a member of the avialan lineage experimented with integumentary ornamentation as early as the Middle to Late Jurassic, and provides further evidence relating to this aspect of the transition from non-avian theropods to birds.

  12. The oldest haplogyne spider (Araneae: Plectreuridae), from the Middle Jurassic of China

    Science.gov (United States)

    Selden, Paul A.; Huang, Diying

    2010-05-01

    New fossil spiders (Arachnida: Araneae) from Middle Jurassic (ca. 165 Ma) strata of Daohugou, Inner Mongolia, China are described as Eoplectreurys gertschi gen. et sp. nov. and referred to the modern haplogyne family Plectreuridae. This small family is restricted to southwestern USA, Mexico, and the adjacent Caribbean area today and hitherto has only a sparse Cenozoic fossil record. The morphology of Eoplectreurys is remarkably similar to modern forms and thus demonstrates great evolutionary conservatism. This new discovery not only extends the fossil record of the family by at least 120 Ma to the Middle Jurassic but also supports the hypothesis of a different distribution of the family in the past than today and subsequent extinction over much of its former range.

  13. Uppermost Jurassic-Lower Cretaceous carbonate deposits from Fara San Martino (Maiella, Italy: biostratigraphic remarks

    Directory of Open Access Journals (Sweden)

    Roberta Bruni

    2007-10-01

    Full Text Available The Uppermost Jurassic-Lower Cretaceous limestone succession in the Maiella region of Italy has been investigated in a profile covering more than 400 m stratigraphical thickness at Fara San Martino. The succession mainly consists of peritidal limestones, intertidal and supratidal sequences being dominant, together with subtidal lagoonal facies. As a consequence, the microfossil assemblages are generally poorly developed, Microfossils occur within the subtidal lagoonal facies of this suite of restricted sediments. This feature led us to recognise five informal biostratigraphic intervals, which are facies related – instead of biozones, each of the intervals being characterized by specific micropaleontological associations. The occurrence and/or disappearance of some marker microfossils were used as references for separating these intervals. Based on these markers, the Uppermost Jurassic-Lower Cretaceous carbonate deposits from Maiella region may be correlated with similar deposits from the Apennines and from other regions in the perimediterranean area.

  14. The Requel: Between the Remake and the Sequel. Jurassic World as a Case Study Analysis

    Directory of Open Access Journals (Sweden)

    Irene RAYA BRAVO

    2017-06-01

    Full Text Available In the audiovisual field, the expansion of the stories is, specifically, materialized through remakes, adaptations and franchises. In this context, the remakes or new versions are recurrent formulas because they recover familiar contents for audiences and, at the same time, they reinvent it in order to capture new generations’ attention. Nevertheless, the remake formula has been changing in the new millennium, adapting to new narrative trends. In recent years, because of the rise of intertextuality and the increasing value of nostalgia, many films have been produced halfway between the remake and the sequel, such as Star Wars. Episode VII: The Force Awakens or Terminator Genisys. In particular, the aim of this paper is to make a comparative analysis between Jurassic Park and Jurassic World because, although this last film extends the original discourse as a sequel, it also offers a reinterpretation of the first film.

  15. New evidence of shared dinosaur across Upper Jurassic Proto-North Atlantic: Stegosaurus from Portugal

    Science.gov (United States)

    Escaso, Fernando; Ortega, Francisco; Dantas, Pedro; Malafaia, Elisabete; Pimentel, Nuno L.; Pereda-Suberbiola, Xabier; Sanz, José Luis; Kullberg, José Carlos; Kullberg, María Carla; Barriga, Fernando

    2007-05-01

    More than one century after its original description by Marsh in 1877, we report in this paper the first uncontroversial evidence of a member of the genus Stegosaurus out of North America. The specimen consists of a partial skeleton from the Upper Jurassic of Portugal, herein considered as Stegosaurus cf. ungulatus. The presence of this plated dinosaur in the upper Kimmeridgian-lower Tithonian Portuguese record and synchronic levels of the Morrison Formation of North America reinforces previous hypothesis of a close relationship between these two areas during the Late Jurassic. This relationship is also supported by geotectonic evidences indicating high probability of an episodic corridor between the Newfoundland and Iberian landmasses. Together, Portuguese Stegosaurus discovery and geotectonic inferences could provide a scenario with episodical faunal contact among North Atlantic landmasses during the uppermost Kimmeridgian-lowermost Tithonian (ca. 148-153 Ma ago).

  16. Paleogeography of the northern portion of the Mixteca terrain, southern Mexico, during the Middle Jurassic

    Science.gov (United States)

    Caballero-Miranda, C.; Morán-Zenteno, D. J.; Urrutia-Fucugauchi, J.; Silva-Romo, G.; Böhnel, H.; Jurado-Chichay, Z.; Cabral-Cano, E.

    A preliminary paleogeographic reconstruction of the northern Mixteca terrain in southern Mexico is presented for the Middle Jurassic. The reconstruction is derived from combined analyses of spatial distribution of marine-continental Jurassic sedimentary units, identification of sediment source, and observations based on sedimentary indicators of environment and transport directions, as well as paleomagnetic and anisotropy of magnetic susceptibility (AMS) results. There is an overall agreement between the AMS magnetic fabric results and the sedimentary indicators of current directions and paleogeographic elements. The results suggest a coastline at the south-southwest portion of this terrain, a general transport of fluvial sediments to the south and southwest, and marine influxes from the south. A Pacific margin provenance is supported by the paleomagnetic results for the northern portion of the Mixteca terrain.

  17. New fossil record of a Jurassic pterosaur from Neuquen Basin, Vaca Muerta Formation, Argentina

    Science.gov (United States)

    Codorniú, Laura; Garrido, Alberto

    2013-12-01

    Discoveries of Jurassic pterosaurs in the Southern Hemisphere are extremely unusual. In Argentina, pterosaurs from the Upper Jurassic (Tithonian) have only been found in the Northwest of Patagonia (Neuquén Basin). These come from marine deposits and three specimens have been discovered up to the present. In this paper, we report a new finding from the Neuquén Basin. This material is identified as a tibiotarsus, which probably belonged to an osteologically adult individual and represents a new species of a pterodactyloid pterosaur of medium size. This discovery provides new evidence that at least two different species of pterodactyloid pterosaurs may have coexisted in Los Catutos Member, Vaca Muerta Formation, from the shallow marine deposits of the Neuquén Basin.

  18. The oldest known snakes from the Middle Jurassic-Lower Cretaceous provide insights on snake evolution.

    Science.gov (United States)

    Caldwell, Michael W; Nydam, Randall L; Palci, Alessandro; Apesteguía, Sebastián

    2015-01-27

    The previous oldest known fossil snakes date from ~100 million year old sediments (Upper Cretaceous) and are both morphologically and phylogenetically diverse, indicating that snakes underwent a much earlier origin and adaptive radiation. We report here on snake fossils that extend the record backwards in time by an additional ~70 million years (Middle Jurassic-Lower Cretaceous). These ancient snakes share features with fossil and modern snakes (for example, recurved teeth with labial and lingual carinae, long toothed suborbital ramus of maxillae) and with lizards (for example, pronounced subdental shelf/gutter). The paleobiogeography of these early snakes is diverse and complex, suggesting that snakes had undergone habitat differentiation and geographic radiation by the mid-Jurassic. Phylogenetic analysis of squamates recovers these early snakes in a basal polytomy with other fossil and modern snakes, where Najash rionegrina is sister to this clade. Ingroup analysis finds them in a basal position to all other snakes including Najash.

  19. A previously unrecognized group of Middle Jurassic triconodontan mammals from Central Asia

    Science.gov (United States)

    Martin, Thomas; Averianov, Alexander O.

    2007-01-01

    Ferganodon narynensis gen. et sp. nov. is represented by a lower molariform tooth from the Middle Jurassic (Callovian) Balabansai Svita in Kyrgyzstan. The new genus is allied with Klamelia zhaopengi Chow and Rich 1984 from the Middle Jurassic Shishugou Formation in Xinjiang, northwest China to the new family Klameliidae based on parallelogram-shaped lower molariforms, imbricating rather than interlocking of cusps e- d- f, by a peculiar distolabial cingulid cusp, and by vertical folding of the enamel on the labial crown side. The new family Klameliidae fam. nov. is most similar to Gobiconodontidae by the structure of the molariform teeth and represents a previously unrecognized radiation of eutriconodontan mammals possibly endemic to Central Asia.

  20. Distribution patterns of the Jurassic ostreids (Bivalvia) from Tanggula of China

    Institute of Scientific and Technical Information of China (English)

    沙金庚

    2001-01-01

    Distribution of the Jurassic ostreids (Bivalvia) from Tanggula area of China includes three patterns, which are (1) Tethys: containing Liostrea birmanica and Eligmus rollandi, (2) western Europe and northern Tethys: consisting of Gryphaea (Bilobissa) bilobata; and (3) Global: composed of Actinostreon gregareum and Nanogyra nana. However, they are all limited between palaeolatidudes 60° South and North. Actinostreon gregareum originated in the Sinemurian of northern Chile and it entered Kenya and Madagascar in the Toarcian, but there is no reliable Si-nemurian-Toarcian A. gregareum fossil record in continental margins between Chile and Kenya and Madagascar. Such distribution patterns and dispersal processes have demonstrated that (1) during the Jurassic all seas and oceans were connected to each other; (2) the Tethys and the western European epicontinental seas did produce some endemic taxa; (3) the distribution of these ostreids was most likely controlled by latitudes and creature ecology; and (4) A, gr

  1. Natural Gas Resource in Jurassic, Y Faulted Subbasin of Songliao Basin

    Institute of Scientific and Technical Information of China (English)

    Yang Haibo; Hu Yutao; Wei Xinghua

    2000-01-01

    Y faulted depression is located in the southeast of Songliao basin, which is another important area explored for natural gas in deep Formation after Xujiaweizi. But it is lowly explored and is not likely to make a major breakthrough in nature gas exploration for shallow and medium layers. The data on the geochemistry and geology indicate that the deep source rocks, especially the Jurassic mudstone bas great potentials of natural gas generation. Based on this, the paper examines the conditions of natural gas generation and further points out the favorable prospective gas - bearing area. The results show that the amount of natural gas generated from the Jurassic mudstone in the Y faulted depression is 8.42 × 1012m3 and the favorable gas - generating area is the body of the faulted depression.

  2. CRADE OF SAND AND DUST STORM WEATHER

    Institute of Scientific and Technical Information of China (English)

    Niu Ruoyun; Tian Cuiying; Bi Baogui; Yang Keming; Wang Youheng; Tuo Ya; Ding Haifang; Zhang Tairen

    2011-01-01

    Background Sand and dust storm,as one of the main disastrous weathers that affect northern China,not only affect the people health and normal life,but cause the short-term climatic changes due to the direct and indirect radiation of the earth-atmosphere system through the dust floating in the sky.The sand end dust weather and its potential harm on the national economy,ecological environment,social activities and other aspects have aroused worldwide concern.

  3. Laboratory evaluation of selected tar sand asphalts

    Energy Technology Data Exchange (ETDEWEB)

    Button, J.W.; Epps, J.A.; Gallaway, B.M.

    1980-12-01

    Three tar sand asphalts of similar grades prepared from one syncrude by three different refining methods were characterized by tests commonly used to specify paving asphalts together with certain special tests. Asphalt-aggregate mixtures were prepared using these asphalts and tested in the laboratory to determine strength stiffness stability, tensile properties, temperature effects and water susceptibility. Comparison of the tar sand asphalt properties to conventional petroleum asphalt properties reveal no striking differences.

  4. Response to Oil Sands Products Assessment

    Science.gov (United States)

    2015-09-01

    Tailings ponds are an operating facility common to all types of surface mining. For oil sands, tailings consisting of water , sand, clay, and residual ...oil, are pumped to these basins—or ponds— where settling occurs and water is recycled for reuse in the process. When the ponds are no longer required...of crude oil transported by tank vessel in Washington waters . In a 2013 Bloomburg Business news article , Dan Murtaugh states, “The dock probably

  5. Treating tar sands formations with dolomite

    Energy Technology Data Exchange (ETDEWEB)

    Vinegar, Harold J.; Karanikas, John Michael

    2010-06-08

    Methods for treating a tar sands formation are described herein. The tar sands formation may include dolomite and hydrocarbons. Methods may include providing heat at less than the decomposition temperature of dolomite from one or more heaters to at least a portion of the formation. At least some of the hydrocarbon fluids are mobilized in the formation. At least some of the hydrocarbon fluids may be produced from the formation.

  6. Three-Color FISH Analysis of TMPRSS2/ERG Fusions in Prostate Cancer Indicates That Genomic Microdeletion of Chromosome 21 Is Associated with Rearrangement

    Directory of Open Access Journals (Sweden)

    Maisa Yoshimoto

    2006-06-01

    Full Text Available The recent description of novel recurrent gene fusions in ~80% of prostate cancer (PCa cases has generated increased interest in the search for new translocations in other epithelial cancers and emphasizes the importance of understanding the origins and biologic implications of these genomic rearrangements. Analysis of 15 PCa cases by reverse transcription-polymerase chain reaction was used to detect six ERG-related gene fusion transcripts with TMPRSS2. No TMPRSS2/ETV1 chimeric fusion was detected in this series. Three-color fluorescence in situ hybridization confirms that TMPRSS2/ERG fusion may be accompanied by a small hemizygous sequence deletion on chromosome 21 between ERG and TMPRSS2 genes. Analysis of genomic architecture in the region of genomic rearrangement suggests that tracts of microhomology could facilitate TMPRSS2/ERG fusion events.

  7. 2-(4-Carbonylphenyl)benzoxazole inhibitors of CETP: attenuation of hERG binding and improved HDLc-raising efficacy.

    Science.gov (United States)

    Sweis, Ramzi F; Hunt, Julianne A; Sinclair, Peter J; Chen, Ying; Eveland, Suzanne S; Guo, Qiu; Hyland, Sheryl A; Milot, Denise P; Cumiskey, Anne-Marie; Latham, Melanie; Rosa, Raymond; Peterson, Larry; Sparrow, Carl P; Anderson, Matt S

    2011-05-01

    The development of 2-phenylbenzoxazoles as inhibitors of cholesteryl ester transfer protein (CETP) is described. Efforts focused on finding suitable replacements for the central piperidine with the aim of reducing hERG binding: a main liability of our benchmark benzoxazole (1a). Replacement of the piperidine with a cyclohexyl group successfully attenuated hERG binding, but was accompanied by reduced in vivo efficacy. The approach of substituting a piperidine moiety with an oxazolidinone also attenuated hERG binding. Further refinement of this latter scaffold via SAR at the pyridine terminus and methyl branching on the oxazolidinone led to compounds 7e and 7f, which raised HDLc by 33 and 27mg/dl, respectively, in our transgenic mouse PD model and without the hERG liability of previous series.

  8. Pragmatics of reclaimed sand quality assessment recovered nowadays from various used sand systems

    Directory of Open Access Journals (Sweden)

    J. Dańko

    2010-04-01

    Full Text Available The assessment of the reclamation degree of used sands is not a simple, clearly defined issue. The great variety of technologies ofmoulding and core sands, based on the organic and inorganic binders does not allow the use of a single, universal index assessing thedegree of reclamation. The article presents the problems of research relating to selection of proper criteria for assessing the degree ofreclamation process of used moulding and core sands deriving from different technologies. The most often applied in practice types ofused sands and the most adequate in practice methods of assessing the degrees of their reclamation were characterized.

  9. Sand Dune Encroachment and Desertification Processes of the Rigboland Sand Sea, Central Iran.

    Science.gov (United States)

    Ahmady-Birgani, Hesam; McQueen, Kenneth G; Moeinaddini, Mazaher; Naseri, Hamidreza

    2017-05-08

    Early studies on sand dune movement and desertification in Iran have not always been convincingly demonstrated because of problems with the field-based measurements. In some areas where various land uses have been engulfed by aeolian sand dunes, desertification is clear, but in other less settled areas, it may not be so obvious. The objective of this study is to demonstrate encroachments of the Rigboland sand sea, central Iran, in its different directions and variable magnitude rates. Determining the rate and direction of the sand sea movements is critical for specifying which lands should be prioritized and quickly protected. The study has trialed a change detection technique which uses a Cross-Tabulation module to compare two available LandsatTM images over the Rigboland sand sea. This indicates that within a ten-year span (from 1988 to 1998) more than 200 ha/yr were added to the Rigboland sand sea, from the alluvial fan landforms in the eastern upstream, outer margins of the Rigboland sand sea. Coupled with GIS techniques, this type of analysis of the remote sensing (RS) images provides an effective tool for the monitoring and prognostication of sand dune movement and sand sea change.

  10. Analysis of sand particles' lift-off and incident velocities in wind-blown sand flux

    Institute of Scientific and Technical Information of China (English)

    Tian-Li Bo; Xiao-Jing Zheng; Shao-Zhen Duan; Yi-Rui Liang

    2013-01-01

    In the research of windblown sand movement,the lift-off and incident velocities of saltating sand particles play a significant role in bridging the spatial and temporal scales from single sand particle's motion to windblown sand flux.In this paper,we achieved wind tunnel measurements of the movement of sand particles near sand bed through improving the wind tunnel experimental scheme of paticle image velocimetry (PIV) and data processing method.And then the influence of observation height on the probability distributions of lift-off and incident velocities of sand particles was analyzed.The results demonstrate that the observation height has no obvious influence on the distribution pattern of the lift-off and incident velocities of sand particles,i.e.,the probability distribution of horizontal and vertical velocities of lift-off and incident sand particles follow a Gaussian distribution and a negative exponential distribution,respectively.However,it influences the center of the Gaussian distribution,the decay constant and the amplitude of the negative exponential distribution.

  11. Uppermost Jurassic-lower cretaceous radiolarian chert from the Tanimbar Islands (Banda Arc), Indonesia

    Science.gov (United States)

    Jasin, Basir; Haile, Neville

    This paper describes and figures Mesozoic Radiolaria from cherts in Pulau Ungar, Tanimbar Islands, eastern Indonesia. Two assemblages of Radiolaria are recognised. The lower assemblage is indicative of upper Tithonian (uppermost Jurassic) to Berriasian (lowermost Cretaceous) and the upper assemblage is of upper Valanginian to Barremian age. These are the first precise ages obtained from the Ungar Formation, a unit including sandstones with apparently good petroleum reservoir characteristics.

  12. A golden orb-weaver spider (Araneae: Nephilidae: Nephila) from the Middle Jurassic of China

    OpenAIRE

    Paul A Selden; Shih, Chungkun; Ren, Dong

    2011-01-01

    Nephila are large, conspicuous weavers of orb webs composed of golden silk, in tropical and subtropical regions. Nephilids have a sparse fossil record, the oldest described hitherto being Cretaraneus vilaltae from the Cretaceous of Spain. Five species from Neogene Dominican amber and one from the Eocene of Florissant, CO, USA, have been referred to the extant genus Nephila. Here, we report the largest known fossil spider, Nephila jurassica sp. nov., from Middle Jurassic (approx. 165 Ma) strat...

  13. Dynamic Paleogeography of the Jurassic Andean Basin: pattern of regression and general considerations on main features

    Directory of Open Access Journals (Sweden)

    J-C. Vicente

    2006-09-01

    Full Text Available Following examination of the evolution of the Jurassic Andean retroarc basin at a global scale for the Central Andes, this paper analyses the pattern of the regressive process, and discusses some general features concerning Andean Jurassic Paleogeography. The early Upper Jurassic regression obeys to an exactly reverse pattern as the one evidenced for the Lower Jurassic transgressive process. Sectors with late transgressions become those with early regressions while those with early transgressions show later regressions. This fact may indicate that the Norte Chico Isthmus (29°S to 30°30'S was a precociously emerged zone from the Bajocian. This carries again a split up between the Tarapacá and Aconcagua-Neuquén basins until their complete drying up in the Late Oxfordian following their restricted circulation. This evaporitic late stage presents great analogy with the Mediterranean «Messinian crisis» and gives evidence of a general tectonic and magmatic control on the straits. The local transgressions observed on the cratonic margin of the central part of these shrinking basins were due to shifting of water masses resulting from the regressive process on the northern and southern margins. Comparison between the main stages of transgression and regression allows some quantification concerning velocities of displacement of coastlines, specifically lengthwise. The permanence of paleogeographic and structural features over the time argues for an indisputable tectonic heritage. In the dynamic framework of this typical barred retroarc basin where arc magmatic activity has contributed considerably to variation on sediment supply and changing bathymetry of the seaways connecting with the Pacific Ocean, evidence for an assumed global eustatic cycle remains questionable or very subordinated.

  14. Jurassic Tectonic Revolution in China and New Interpretation of the "Yanshan Movement"

    Institute of Scientific and Technical Information of China (English)

    DONG Shuwen; ZHANG Yueqiao; LONG Changxing; YANG Zhenyu; JI Qiang; WANG Tao; HU Jianming; CHEN Xuanhua

    2008-01-01

    With acquisition and accumulation of new data of structural geological investigations and high-resolution isotopic dating data, we have greatly improved our understanding of the tectonic events occurring in eastern China during the period from the Late Jurassic to Early Cretaceous and may give a new interpretation of the nature, timing and geodynamic settings of the "Yanshan Movement". During the Mid-Late Jurassic (165±5 Ma), great readjustment of plate amalgamation kinematics took place in East Asia and the tectonic regime underwent great transformation, thus initiating a new tectonic regime in which the North China Block was the center and different plates converged toward it from the north, east and southwest and forming the "East Asia convergent"tectonic system characterized by intracontinental subduction and orogeny. As a consequence, the crustal lithosphere of the East Asian continent thickened considerably during the Late Jurassic,followed immediately by Early Cretaceous substantial lithospheric thinning and craton destruction featured by drastic lithospheric extension and widespread volcano-magmatic activities, resulting in a major biotic turnover from the Yanliao biota to Jehol Biota. Such a tremendous tectonic event that took place in the continent of China and East Asia is the basic connotation of the "Yanshan Movement". In the paper, according to the deformation patterns, geodynamic settings and deep processes, the "Yanshan Movement" is redefined as the Late Jurassic East Asian multi-directional plate convergent tectonic regime and its associated extensive intracontinental orogeny and great tectonic change that started at ~165±5 Ma. The substantial lithospheric attenuation in East China is considered the post-effect of the Yanshanian intracontinental orogeny and deformation.

  15. Recent Sand Avalanching on Rabe Crater Dunes

    Science.gov (United States)

    2000-01-01

    Dark streaks on the steep, down-wind slopes of sand dunes in Rabe Crater are seen at several locations in this Mars Global Surveyor (MGS) Mars Orbiter Camera (MOC) image. These streaks indicate relatively recent (i.e., in the past few years or less) movement of sand down these slopes.Sand dunes move forward by the combined action of wind that drives sand up the shallow slope on the windward side of the dune (in this case, the slopes that face toward the lower right) and the avalanching of this sand down the steeper, lee-side slope. The steep slope is also known as the slip face. The dark streaks indicated by arrows are evidence for sand avalanches that occurred within a few months or years of the time when the picture was taken in March 1999. Other streaks which are seen criss-crossing the dunes may be the result of passing dust devils. This image is illuminated from the upper left and located in Rabe Crater of the Hellespontus-Noachis region near 44.2oS, 325.6oW.

  16. Discrete particle simulation of mixed sand transport

    Institute of Scientific and Technical Information of China (English)

    Fengjun Xiao; Liejin Guo; Debiao Li; Yueshe Wang

    2012-01-01

    An Eulerian/Lagrangian numerical simulation is performed on mixed sand transport.Volume averaged Navier-Stokes equations are solved to calculate gas motion,and particle motion is calculated using Newton's equation,involving a hard sphere model to describe particle-to-particle and particle-to-wall collisions.The influence of wall characteristics,size distribution of sand particles and boundary layer depth on vertical distribution of sand mass flux and particle mean horizontal velocity is analyzed,suggesting that all these three factors affect sand transport at different levels.In all cases,for small size groups,sand mass flux first increases with height and then decreases while for large size groups,it decreases exponentially with height and for middle size groups the behavior is in-between.The mean horizontal velocity for all size groups well fits experimental data,that is,increasing logarithmically with height in the middle height region.Wall characteristics greatly affects particle to wall collision and makes the flat bed similar to a Gobi surface and the rough bed similar to a sandy surface.Particle size distribution largely affects the sand mass flux and the highest heights they can reach especially for larger particles.

  17. Predicting the occurrence of sand banks in the North Sea

    NARCIS (Netherlands)

    Veen, van der Henriët H.; Hulscher, Suzanne J.M.H.

    2009-01-01

    Sand banks have a wavelength between 1 and 10 km, and they are up to several tens of meters high. Also, sand banks may have an impact on large-scale human activities that take place in the North Sea like sand mining, shipping, offshore wind farms, etc. Therefore, it is important to know where sand b

  18. THE PROTECTION OF JURASSIC SITES AND FOSSILS: CHALLENGES FOR GLOBAL JURASSIC SCIENCE (INCLUDING A PROPOSED STATEMENT ON THE CONSERVATION OF PALAEONTOLOGICAL HERITAGE AND STRATOTYPES

    Directory of Open Access Journals (Sweden)

    KEVIN N. PAGE

    2004-03-01

    Full Text Available Effective geoconservation systems are crucial to the activities of subcommissions of the International Subcommission on Stratigraphy, such as the Jurassic Subcommission (ISJS. Fundamentally, the core activity of any Subcommission, the establishment of Global Stratotype Sections and Points (GSSPs is a conservation activity in itself, involving the selection of key sites, to be maintained as references for subsequent consultation. Without adequate national site protection and management systems this fundamental function is liable to fail as the selected site remains vulnerable to loss and damage. In addition, strict conservation systems applied without adequate understanding of the needs of research and education can also prevent or significantly inhibit geological science and the use of sites such as GSSPs. To address these extreme scenarios and assist the development of a more scientific approach to conservation of geological sites of stratigraphical and palaeontological importance during dialogues with administrative authorities, a Statement defining categories of palaeontological heritage requiring protection and the basic requirements needed to achieve the conservation of stratotype localities is here proposed. The context of the protection of Jurassic sites within other international projects is also reviewed, in particular the IUGS Geosites project, within which all GSSPs will be listed.

  19. Sterols of Saccharomyces cerevisiae erg6 Knockout Mutant Expressing the Pneumocystis carinii S-Adenosylmethionine:Sterol C-24 Methyltransferase (SAM:SMT)

    Science.gov (United States)

    Kaneshiro, Edna S.; Johnston, Laura Q.; Nkinin, Stephenson W.; Romero, Becky I.; Giner, José-Luis

    2014-01-01

    The AIDS-associated lung pathogen Pneumocystis is classified as a fungus although Pneumocystis has several distinct features such as the absence of ergosterol, the major sterol of most fungi. The P. carinii S-adenosylmethionine:sterol C24-methyltransferase (SAM:SMT) enzyme, coded by the erg6 gene, transfers either one or two methyl groups to the C-24 position of the sterol side chain producing both C28 and C29 24-alkylsterols in approximately the same proportions whereas most fungal SAM:SMT transfer only one methyl group to the side chain. The sterol compositions of wild type Sacchromyces cerevisiae, the erg6 knockout mutant (Δerg6), and Δerg6 expressing the P. carinii or the S. cerevisiae erg6 gene were analyzed by a variety of chromatographic and spectroscopic procedures to examine functional complementation in the yeast expression system. Detailed sterol analyses were obtained using high performance liquid chromatography (HPLC) and proton nuclear magnetic resonance spectroscopy (1H-NMR). The P. carinii SAM:SMT in the Δerg6 restored its ability to produce the C28 sterol ergosterol as the major sterol, and also resulted in low levels of C29 sterols. This indicates that while the P. carinii SAM:SMT in the yeast Δerg6 cells was able to transfer a second methyl group to the side chain, the action of Δ24(28)-sterol reductase (coded by the erg4 gene) in the yeast cells prevented the formation and accumulation of as many C29 sterols as that found in P. carinii. PMID:25230683

  20. 基于ERG理论对提升馆员素质的思考%Thinking on Improving Librarian's Quality Based on the ERG

    Institute of Scientific and Technical Information of China (English)

    朱张琳

    2015-01-01

    文章介绍了ERG理论的观点及应用,分析了图书馆员素质现状及滞后原因,提出基于ERG理论的提升馆员素质的建议.%The paper introduces views of ERG theory and it's application, analyses the situation of librarian's quality and the rea-sons for slow, makes suggestions on improving librarian's quality based on ERG theory.