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Sample records for interior studying proteins

  1. Studies in Interior Design

    Science.gov (United States)

    Environ Planning Design, 1970

    1970-01-01

    Floor plans and photographs illustrate a description of the Samuel C. Williams Library at Stevens Institute of Technology, Hoboken, N.J. The unusual interior design allows students to take full advantage of the library's resources. (JW)

  2. Statistical interior properties of globular proteins

    International Nuclear Information System (INIS)

    Zhou-Ting, Jiang; Tai-Quan, Wu; Lin-Xi, Zhang; Ting-Ting, Sun

    2009-01-01

    The character of forming long-range contacts affects the three-dimensional structure of globular proteins deeply. As the different ability to form long-range contacts between 20 types of amino acids and 4 categories of globular proteins, the statistical properties are thoroughly discussed in this paper. Two parameters N C and N D are defined to confine the valid residues in detail. The relationship between hydrophobicity scales and valid residue percentage of each amino acid is given in the present work and the linear functions are shown in our statistical results. It is concluded that the hydrophobicity scale defined by chemical derivatives of the amino acids and nonpolar phase of large unilamellar vesicle membranes is the most effective technique to characterise the hydrophobic behavior of amino acid residues. Meanwhile, residue percentage P i and sequential residue length L i of a certain protein i are calculated under different conditions. The statistical results show that the average value of P i as well as L i of all-α proteins has a minimum among these 4 classes of globular proteins, indicating that all-α proteins are hardly capable of forming long-range contacts one by one along their linear amino acid sequences. All-β proteins have a higher tendency to construct long-range contacts along their primary sequences related to the secondary configurations, i.e. parallel and anti-parallel configurations of β sheets. The investigation of the interior properties of globular proteins give us the connection between the three-dimensional structure and its primary sequence data or secondary configurations, and help us to understand the structure of protein and its folding process well. (cross-disciplinary physics and related areas of science and technology)

  3. INTERIORITY - a prefab case study

    DEFF Research Database (Denmark)

    Hvejsel, Marie Frier

    Dealing with the general theme of domestic architectural quality, the PhD thesis ‘INTERIORITY’ takes its point of departure in the continuous and increasing need to improve our capability as architects to theoretically articulate the intangible concept of quality, and to reveal it through an active...... been motivated by the particular hypothesis that an introduction of the notion of interiority, as an ability of the spatial envelope itself to address the sensuous scale of furniture, unfolds a particular dual critical potential signifying our experience of domestic architectural quality: On the one......, tectonically. Hence, it has been a particular idea of the study to explore the relation between furniture, the spatial envelope itself, and its construct by using furniture as an architectural concept. Consequently, the thesis has specifically investigated whether this notion of interiority, describing...

  4. INTERIORITY

    DEFF Research Database (Denmark)

    Hvejsel, Marie Frier

    Dealing with the general theme of domestic architectural quality, the PhD thesis ‘INTERIORITY’ takes its point of departure in the continuous and increasing need to improve our capability as architects to theoretically articulate the intangible concept of quality, and to reveal it through an active...... been motivated by the particular hypothesis that an introduction of the notion of interiority, as an ability of the spatial envelope itself to address the sensuous scale of furniture, unfolds a particular dual critical potential signifying our experience of domestic architectural quality: On the one......, tectonically. Hence, it has been a particular idea of the study to explore the relation between furniture, the spatial envelope itself, and its construct by using furniture as an architectural concept. Consequently, the thesis has specifically investigated whether this notion of interiority, describing...

  5. Thermodynamic effects of replacements of Pro residues in helix interiors of maltose-binding protein.

    Science.gov (United States)

    Prajapati, R S; Lingaraju, G M; Bacchawat, Kiran; Surolia, Avadhesha; Varadarajan, Raghavan

    2003-12-01

    Introduction of Pro residues into helix interiors results in protein destabilization. It is currently unclear if the converse substitution (i.e., replacement of Pro residues that naturally occur in helix interiors would be stabilizing). Maltose-binding protein is a large 370-amino acid protein that contains 21 Pro residues. Of these, three nonconserved residues (P48, P133, and P159) occur at helix interiors. Each of the residues was replaced with Ala and Ser. Stabilities were characterized by differential scanning calorimetry (DSC) as a function of pH and by isothermal urea denaturation studies as a function of temperature. The P48S and P48A mutants were found to be marginally more stable than the wild-type protein. In the pH range of 5-9, there is an average increase in T(m) values of P48A and P48S of 0.4 degrees C and 0.2 degrees C, respectively, relative to the wild-type protein. The other mutants are less stable than the wild type. Analysis of the effects of such Pro substitutions in MBP and in three other proteins studied to date suggests that substitutions are more likely to be stabilizing if the carbonyl group i-3 or i-4 to the mutation site is not hydrogen bonded in the wild-type protein. Copyright 2003 Wiley-Liss, Inc.

  6. Thermodynamic Effects of Replacements of Pro Residues in Helix Interiors of Maltose-Binding Protein

    OpenAIRE

    Prajapati, RS; Lingaraju, GM; Bacchawat, Kiran; Surolia, Avadhesha; Varadarajan, Raghavan

    2003-01-01

    Introduction of Pro residues into helix interiors results in protein destabilization. It is currently unclear if the converse substitution (i.e., replacement of Pro residues that naturally occur in helix interiors would be stabilizing). Maltose-binding protein is a large 370-amino acid protein that contains 21 Pro residues. Of these, three nonconserved residues (P48, P133, and P159) occur at helix interiors. Each of the residues was replaced with Ala and Ser. Stabilities were characterized by...

  7. Interior Design Supports Art Education: A Case Study

    Science.gov (United States)

    Clemons, Stephanie A.

    2006-01-01

    Interior design, as a field of study, is a rapidly growing area of interest--particularly for teenagers in the United States. Part of this interest stems from the proliferation of design-related reality shows available through television media. Some art educators and curriculum specialists in the nation perceive the study of interior spaces as a…

  8. Geothermal studies of seven interior salt domes

    International Nuclear Information System (INIS)

    1983-06-01

    This report defines and compares the geothermal environments of eight selected Gulf Coast salt domes. The thermal regimes in and around Gulf Coast salt domes are not well documented. The data base used for this study is an accumulation of bottom-hole temperature readings from oil and gas exploration wells and temperature logs run for the National Waste Terminal Storage (NWTS) program. The bottom-hole tempreatures were corrected in order to estimate the actual geothermal environments. Prior thermal studies and models indicate temperatures in and around salt domes are elevated above the norm by 1 0 F to 25 0 F. Using existing geothermal data and accepted theory, geothermal gradients for the selected domes and surrounding sediments were estimated. This study concludes that salt domes within a given basin have similar geothermal gradients, but that the basins differ in average geothermal gradients. This relationship is probably controlled by deep basement structural trends. No evidence of residual heat of emplacement was found associated with any of the selected domes

  9. Service-Learning and Interior Design: A Case Study

    Science.gov (United States)

    Sterling, Mary

    2007-01-01

    The case study approach was used to analyze experiential learning through its three components: knowledge, action, and reflection. Two interior design courses were integrated through a university service-learning project. The restoration/adaptive reuse of a 95-year-old library building was to serve as a prototype for future off-campus…

  10. New initiative in studies of Earth's deep interior

    Science.gov (United States)

    Lay, Thorne

    A multidisciplinary U.S. research community is undertaking a new coordinated effort to study the state and dynamics of the Earth's deep mantle and core. At an open meeting held at the Massachusetts Institute of Technology, Cambridge, from September 11 to 12, 1992, over 120 Earth scientists gathered to discuss this new program, which is an outgrowth of activity during the previous year by an ad hoc steering committee. The research program will be coordinated by a community-based scientific organization and supported through competitive research proposals submitted to the National Science Foundation with the aim of facilitating cooperative research projects cutting across traditional disciplinary and institutional boundaries.The new organization is the U.S. Studies of the Earth's Deep Interior (SEDI) Coordinating Committee. This committee will facilitate communication among the U.S. SEDI research community, federal funding agencies, the AGU Committee for Studies of the Earth's Interior (SEI), the Union SEDI Committee of the International Union of Geodesy and Geophysics, and the general public (Figure 1).

  11. Experimental Study of Interior Temperature Distribution Inside Parked Automobile Cabin

    Directory of Open Access Journals (Sweden)

    Issam Mohammed Ali Aljubury

    2015-03-01

    Full Text Available Temperature inside the vehicle cabin is very important to provide comfortable conditions to the car passengers. Temperature inside the cabin will be increased, when the car is left or parked directly under the sunlight. Experimental studies were performed in Baghdad, Iraq (33.3 oN, 44.4 oE to investigate the effects of solar radiation on car cabin components (dashboard, steering wheel, seat, and inside air. The test vehicle was oriented to face south to ensure maximum (thermal sun load on the front windscreen. Six different parking conditions were investigated. A suggested car cover was examined experimentally. The measurements were recorded for clear sky summer days started at 8 A.M. till 5 P.M. Results show that interior air temperature in unshaded parked car reaches 70oC and dashboard temperature can approach 100 oC. While, cardboard car shade inside the car not reduce the air temperature inside it. Suggested car cover with 1 cm part-down side windows reduced temperature of cabin components by 70 % in average compare to the base case.

  12. Self-Propelled Soft Protein Microtubes with a Pt Nanoparticle Interior Surface.

    Science.gov (United States)

    Kobayakawa, Satoshi; Nakai, Yoko; Akiyama, Motofusa; Komatsu, Teruyuki

    2017-04-11

    Human serum albumin (HSA) microtubes with an interior surface composed of Pt nanoparticles (PtNPs) are self-propelled in aqueous H 2 O 2 medium. They can capture cyanine dye and Escherichia coli (E. coli) efficiently. Microtubes were prepared by wet templating synthesis by using a track-etched polycarbonate (PC) membrane with alternate filtrations of aqueous HSA, poly-l-arginine (PLA), and citrate-PtNPs. Subsequent dissolution of the PC template yielded uniform hollow cylinders made of (PLA/HSA) 8 PLA/PtNP stacking layers (1.16±0.02 μm outer diameter, ca. 23 μm length). In aqueous H 2 O 2 media, the soft protein microtubes are self-propelled by jetting O 2 bubbles from the open-end terminus. The effects of H 2 O 2 and surfactant concentrations on the velocity were investigated. The swimming microtube captured cyanine dye in the HSA component of the wall. Addition of an intermediate γ-Fe 3 O 4 layer allowed manipulation of the direction of movement of the tubule by using a magnetic field. Because the exterior surface is positively charged, the bubble-propelled microtubes adsorbed E. coli with high efficiency. The removal ratio of E. coli by a single treatment reached 99 %. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

  13. Enhancement of the thermostability of Hydrogenobacter thermophilus cytochrome c(552) through introduction of an extra methylene group into its hydrophobic protein interior.

    Science.gov (United States)

    Tai, Hulin; Irie, Kiyofumi; Mikami, Shin-ichi; Yamamoto, Yasuhiko

    2011-04-19

    Careful scrutiny of the protein interior of Hydrogenobacter thermophilus cytochrome c(552) (HT) on the basis of its X-ray structure [Travaglini-Allocatelli, C., Gianni, S., Dubey, V. K., Borgia, A., Di Matteo, A., Bonivento, D., Cutruzzola, F., Bren, K. L., and Brunori, M. (2005) J. Biol. Chem. 280, 25729-25734] indicated that a void space, which is large enough to accommodate a methyl group, exists in the hydrophobic protein interior near the heme. We tried to reduce the void space through the replacement of a Val by Ile or Leu (Val/Ile or Val/Leu mutation), and then the structural and functional consequences of these two mutations were characterized in order to elucidate the relationship between the nature of the packing of hydrophobic residues and the functional properties of the protein. The study demonstrated striking differences in the structural and functional consequences between the two mutations. The Val/Ile mutation was found to cause further enhancement of the thermostability of the oxidized HT, as reflected in the increase of the denaturation temperature (T(m)) value by ∼ 3 deg, whereas the thermostability of the reduced form was essentially unaffected. As a result, the redox potential (E(m)) of the Val/Ile mutant exhibited a negative shift of ∼ 50 mV relative to that of the wild-type protein in an enthalpic manner, this being consistent with our previous finding that a protein with higher stability in its oxidized form exhibits a lower E(m) value [Terui, N., Tachiiri, N., Matsuo, H., Hasegawa, J., Uchiyama, S., Kobayashi, Y., Igarashi, Y., Sambongi, Y., and Yamamoto, Y. (2003) J. Am. Chem. Soc. 125, 13650-13651]. In contrast, the Val/Leu mutation led to a decrease in thermostability of both the redox forms of the protein, as reflected in the decreases of the T(m) values of the oxidized and reduced proteins by ∼ 3 and ∼ 5 deg, respectively, and the E(m) value of the Val/Leu mutant happened to be similar to that of the Val/Ile one. The E

  14. Study of thermal stability and degradation of fire resistant candidate polymers for aircraft interiors

    Science.gov (United States)

    Hsu, M. T. S.

    1976-01-01

    The thermochemistry of bismaleimide resins and phenolphthalein polycarbonate was studied. Both materials are fire-resistant polymers and may be suitable for aircraft interiors. The chemical composition of the polymers has been determined by nuclear magnetic resonance and infrared spectroscopy and by elemental analysis. Thermal properties of these polymers have been characterized by thermogravimetric analyses. Qualitative evaluation of the volatile products formed in pyrolysis under oxidative and non-oxidative conditions has been made using infrared spectrometry. The residues after pyrolysis were analyzed by elemental analysis. The thermal stability of composite panel and thermoplastic materials for aircraft interiors was studied by thermogravimetric analyses.

  15. Geohydrolic studies of Gulf Coast interior salt domes

    International Nuclear Information System (INIS)

    Smith, C.G. Jr.

    1977-01-01

    Disposal of high-level radioactive wastes in Gulf Coast salt domes requires that the cavities be free from groundwater dissolution for 250,000 years. Salinity variations of groundwater near selected domes were investigated. Saline groundwater anomalies (saline plumes) in aquifers pierced or uplifted by the dome may be the result of salt solution by groundwater. In the Northeast Texas salt dome basin electric logs of oil and gas wells have been used to estimate groundwater salinities in aquifers near selected domes. Thus far, the analyses have revealed saline groundwater anomalies around 4 of the 9 domes studied. Estimates of the rate of salt dissolution from domes associated with saline groundwater plumes indicate that less than 30 meters of salt will be removed from the upper surfaces of the dome in 250,000 years. Thus, these preliminary studies show that even apparently unstable domes may be sufficiently stable to serve as waste disposal sites. 6 figures

  16. Inside Job: Methods for Delivering Proteins to the Interior of Mammalian Cells.

    Science.gov (United States)

    Bruce, Virginia J; McNaughton, Brian R

    2017-08-17

    Currently, 7 of the top 10 selling drugs are biologics, and all of them are proteins. Their large size, structural complexity, and molecular diversity often results in surfaces capable of potent and selective recognition of receptors that challenge, or evade, traditional small molecules. However, most proteins do not penetrate the lipid bilayer exterior of mammalian cells. This severe limitation dramatically limits the number of disease-relevant receptors that proteins can target and modulate. Given the major role proteins play in modern medicine, and the magnitude of this limitation, it is unsurprising that an enormous amount of effort has been dedicated to overcoming this pesky impediment. In this article, we summarize and evaluate current approaches for intracellular delivery of exogenous proteins to mammalian cells and, in doing so, aim to illuminate fertile ground for future discovery in this critical area of research. Copyright © 2017. Published by Elsevier Ltd.

  17. Computational Studies of Protein Hydration Methods

    Science.gov (United States)

    Morozenko, Aleksandr

    It is widely appreciated that water plays a vital role in proteins' functions. The long-range proton transfer inside proteins is usually carried out by the Grotthuss mechanism and requires a chain of hydrogen bonds that is composed of internal water molecules and amino acid residues of the protein. In other cases, water molecules can facilitate the enzymes catalytic reactions by becoming a temporary proton donor/acceptor. Yet a reliable way of predicting water protein interior is still not available to the biophysics community. This thesis presents computational studies that have been performed to gain insights into the problems of fast and accurate prediction of potential water sites inside internal cavities of protein. Specifically, we focus on the task of attainment of correspondence between results obtained from computational experiments and experimental data available from X-ray structures. An overview of existing methods of predicting water molecules in the interior of a protein along with a discussion of the trustworthiness of these predictions is a second major subject of this thesis. A description of differences of water molecules in various media, particularly, gas, liquid and protein interior, and theoretical aspects of designing an adequate model of water for the protein environment are widely discussed in chapters 3 and 4. In chapter 5, we discuss recently developed methods of placement of water molecules into internal cavities of a protein. We propose a new methodology based on the principle of docking water molecules to a protein body which allows to achieve a higher degree of matching experimental data reported in protein crystal structures than other techniques available in the world of biophysical software. The new methodology is tested on a set of high-resolution crystal structures of oligopeptide-binding protein (OppA) containing a large number of resolved internal water molecules and applied to bovine heart cytochrome c oxidase in the fully

  18. Mechanism, kinetics and application studies on enhanced activated sludge by interior microelectrolysis.

    Science.gov (United States)

    Yang, Xiaoyi; Xue, Yu; Wang, Wenna

    2009-01-01

    Enhanced activated sludge by interior microelectrolysis (EAIM) was studied to treat textile wastewater, kinetics, mechanism and application of which were also discussed in comparison with traditional activated sludge and interior microelectrolysis, respectively. The results of kinetics study indicated three different processes all followed first-order kinetics well. In EAIM, three impact factors take effects on COD removal, which are flocculation, activated sludge and electrophoresis and redox. In terms of assumption of no interaction among three COD removal mechanisms, 49.6% of the total COD removal is ascribed to flocculation, 30.1% to activated sludge and 20.3% to electrophoresis and redox. EAIM showed its advantages in COD removal efficiency, extensive adaptability to complex composition and wide range of pH. EAIM-aerobic process provided an efficient and economic performance for dealing with textile wastewater.

  19. Studi Terapan Gaya Desain Interior Jepang Restoran Tomoto, Imari, Kayu, Nishiki Surabaya

    OpenAIRE

    Widjaja, Eveline

    2013-01-01

    Applied studies in interior design style Japanese restaurant tomoto, Imari, Wood, Nishiki, Surabaya has been the subject of research that analyzed from the viewpoint of Japanese design style. Restaurant is a place of business or building that provides food and beverages which managed commercially by providing good service to all visitors. The application of different Japanese design style at every restaurant draw researchers to examine more in terms of the concept of Japanese design style. Th...

  20. The Net-Generation Interior Design Student: An Exploratory Study Assessing Learning and Engagement within a Computer Simulation Environment

    Science.gov (United States)

    Peterson, Julie Ellen

    2009-01-01

    The first purpose of this experimental study was to determine if there were effects on achievement between traditional pencil-and-paper instructional strategies and computer simulated instructional strategies used to teach interior design business ethics. The second purpose was to determine the level of engagement of interior design students using…

  1. A Primary Study on the Recording Method of Interior Decoration in Qing Dynasty - A Case Study of Interior Decoration of Jingfu Palace

    Science.gov (United States)

    Rong, X.; He, B.; Zhuang, L.

    2017-08-01

    The existing interior decoration of Qing Dynasty is the master of that of each dynasty, with its diversified forms and complicated functions. As early as 1920s, the Rehabilitation Committee of Qing court recorded the interior furnishing in the Forbidden City by using Chinese traditional documentary method. Today, along with the constantly updated techniques, the recording method for the current situation of interior decoration has gradually developed from two-dimensional drawings into digital and comprehensive record. However, the current research results are mostly limited to a single field. This paper takes the digital record and reproduction about the current situation of interior decoration in Jingfu Palace in the Forbidden City as an example. Through the use of photogrammetry, 3D laser scanning, virtual display and other technology and equipment at the forefront of architectural field, it makes qualitative and quantitative record about the interior decoration inside Jingfu Palace. By combing with the interpretation of historical documents, it restores the original design ideas hidden behind the current situation of interior decoration, so as to summarize the best recording and reproducing method of interior decoration of Qing Dynasty.

  2. A Primary Study on the Recording Method of Interior Decoration in Qing Dynasty – A Case Study of Interior Decoration of Jingfu Palace

    Directory of Open Access Journals (Sweden)

    X. Rong

    2017-08-01

    Full Text Available The existing interior decoration of Qing Dynasty is the master of that of each dynasty, with its diversified forms and complicated functions. As early as 1920s, the Rehabilitation Committee of Qing court recorded the interior furnishing in the Forbidden City by using Chinese traditional documentary method. Today, along with the constantly updated techniques, the recording method for the current situation of interior decoration has gradually developed from two-dimensional drawings into digital and comprehensive record. However, the current research results are mostly limited to a single field. This paper takes the digital record and reproduction about the current situation of interior decoration in Jingfu Palace in the Forbidden City as an example. Through the use of photogrammetry, 3D laser scanning, virtual display and other technology and equipment at the forefront of architectural field, it makes qualitative and quantitative record about the interior decoration inside Jingfu Palace. By combing with the interpretation of historical documents, it restores the original design ideas hidden behind the current situation of interior decoration, so as to summarize the best recording and reproducing method of interior decoration of Qing Dynasty.

  3. Content Analysis of Introductory Interior Design College Textbooks: A Study Revisited

    Science.gov (United States)

    Temple, Julie A.; Potthoff, Joy K.

    2013-01-01

    Introductory interior design texts adopted by design educators present information relevant to both historical and contemporary issues in interior design. According to one author, they provide a "survey of the field of interior design as it now exists" (Pile, 2007). A comparison of the content of contemporary texts with those of more…

  4. Residential Interior Design as Complex Composition: A Case Study of a High School Senior's Composing Process

    Science.gov (United States)

    Smagorinsky, Peter; Zoss, Michelle; Reed, Patty M.

    2006-01-01

    This research analyzed the composing processes of one high school student as she designed the interiors of homes for a course in interior design. Data included field notes, an interview with the teacher, artifacts from the class, and the focal student's concurrent and retrospective protocols in relation to her design of home interiors. The…

  5. Interior Design.

    Science.gov (United States)

    Texas Tech Univ., Lubbock. Home Economics Curriculum Center.

    This document contains teacher's materials for an eight-unit secondary education vocational home economics course on interior design. The units cover period styles of interiors, furniture and accessories, surface treatments and lighting, appliances and equipment, design and space planning in home and business settings, occupant needs, acquisition…

  6. Study on improvement of continuous hydrogen production by photosynthetic biofilm in interior illuminant reactor.

    Science.gov (United States)

    Liu, Wenhui; Yuan, Linjiang; Wei, Bo

    2016-09-01

    In the present study, a new type of interior optical fiber illuminating reactor was developed for H2 production to solve the problem of luminous intensity attenuation at the center portion of a reactor, and an immobilization technique was used to enhance the stability of a continuous hydrogen production process with attached photosynthetic bacteria, using glucose as a sole carbon substrate for the indigenous photosynthetic bacteria (PSB) Rhodopseudomonas palustris SP-6. Results of the experiments showed that the interior optical fiber illuminating reactor produces H2 more efficiently and productively than the exterior light source reactor, with the cumulative H2 production, the maximum H2 production rate and H2 yield increased by 813ml, 11.3ml l-1 h-1 and 22.3%, respectively. The stability of the product of continuous hydrogen was realized by immobilizing PSB on the surface of powder active carbon(PAC). After adding the dosage of 2.0g l-1 PAC, the continuous steady operation of H2 production gave a high H2 yield of 1.398 mol H2 mol-1 glucose and an average H2 production rate of 35.1ml l-1 h-1 illuminating with a single interior optical fiber light source. Meanwhile, a higher H2 yield of 1.495 mol H2 mol-1 glucose and an average H2 production rate of 38.7ml l-1 h-1 were attained illuminating with a compound lamp in the continuous H2 production for 20 days.

  7. Pengaruh Elemen Desain Interior Terhadap Persepsi Maskulinitas (Studi Kasus: Barber Shop

    Directory of Open Access Journals (Sweden)

    Ardiles Septuaginta Sopakuwa

    2016-07-01

    Full Text Available Barber shop merupakan ruang publik yang masih belum diinfiltrasi oleh wanita dan diperuntukkan bagi pria saja, maka barber shop dianggap cocok untuk menjadi representasi ruang publik khusus pria. Penelitian ini berupaya mencari tahu dampak dari elemen lingkungan interior terhadap persepsi maskulin, sehingga ruang-ruang publik khusus pria yang ada saat ini dapat secara optimal memenuhi kebutuhan persepsi maskulin. Penelitian ini menggunakan stimulus visual berupa desain tiga dimensional dari lima kondisi barber shop yang merupakan manipulasi kombinasi variabel bebas berupa warna biru (A1 dan jingga (A2, serta material concrete (B1 dan kayu (B2. Kombinasi warna dan material ini menghasilkan empat kondisi eksperimental, dan  satu kondisi kontrol tanpa elemen warna maupun material experimental yang diterapkan. Eksperimen dilakukan terhadap 30 orang responden yang merupakan pelanggan barber shop untuk memberikan respon persepsi, emosi, dan sikap terhadap 5 buah stimulus visual yang menggambarkan kondisi barber shop. Data yang didapatkan dianalisa dengan metode ANOVA dan menunjukkan bahwa perbedaan respon terhadap keempat kondisi eksperimental tidak signifikan. Kondisi yang dipersepsi paling positif memiliki setidaknya satu elemen interior maskulin. Sementara kondisi yang dinilai paling mendukung emosi positif tidak menerapkan satu elemen interior maskulin pun. Sehingga menarik untuk menilai lebih jauh dampak kombinasi elemen interior ini terhadap respon responden. Kata Kunci: barber shop; desain eksperimental; emosi positif; persepsi maskulinitas; sikap positif.Influence of Interior Design Elements in Perception of Masculinity (Case Study: Barber ShopThe barber shop is one of the few public spaces that are not infiltrated by women. Therefore, the barber shop is a good representative of a male-only public space. This research was aimed at finding out the effect of interior-environment elements towards a masculine perception, so that current male

  8. Studi Gaya Vintage Pada Interior Cafe Di Surabaya. (Studi Kasus : Canary Cafe, DailySweet Cafe Dan Stilrod Cafe)

    OpenAIRE

    Mariana Wibowo, Lia Monica Tejo

    2014-01-01

    Research studies is about the application of vintage style in some cafe in Surabaya aims to determine the application of vintage design styles contained in the interior of the cafe Carpentier Kitchen , Canary Cafe , Daily Sweet Cafe , and Stilroad Cafe . Research studies of vintage style design will be carried out in Surabaya with a case study that some cafe in Surabaya that meets the criteria of vintage design styles , including the Carpentier Kitchen , Canary Cafe , Daily Sweet Cafe , and S...

  9. RECYCLED TEXTILES USED IN AUTOMOTIVE INTERIORS. CASE STUDY- FORD MOTOR COMPANY

    Directory of Open Access Journals (Sweden)

    CUC Sunhilde

    2017-05-01

    Full Text Available The environmental movement is affecting all industries, but the textile and automotive industries are two of the few that are constantly being criticized. The automotive industry is the subject of much research, it is the largest manufacturing activity, there is a complex supply chain, is resource intensive and emits various hazardous gases and waste products. The article reviews the current state of automotive industry regarding the textile application. Automotive textiles have been classified as belonging to a category called “Mobiltech” which is one of the main streams of technical textiles. The term means all type of textile components e.g. fibers, filaments, yarns and the fabric used in automobiles. They are classed as technical textile because of the very high performance specifications and special properties required, different from those used in clothing and other applications. The performance of the automotive textiles depends on the fibre properties, fabric structures and various finishes used in the manufacturing processes. After a short presentation of used fibres in car interiors, with advantages and disadvantages it is presented the sustainable textile solutions for the automotive industry. The paper focuses in particular of the use of recycling of textile waste to highlight how the processes of recycled textiles and sustainable textiles production are linked in the automotive sector. A case study with Ford Motor Company outlines and examines their design, development and manufacture process for automotive textiles for car seat coverings and interiors

  10. Investigation of the interior of Mercury through the study of its gravity, topography, and tidal response

    OpenAIRE

    Padovan, Sebastiano

    2014-01-01

    With the goal of furthering our understanding of the interior structure of Mercury, this work tries to answer the following two questions. What can the response of the planet to solar tides reveal about the interior structure? What is the thickness of the crust and what are the implications for the interior?By comparing the models developed here for the tidal response of Mercury with the response measured by the MErcury Surface Space ENvironment GEochemistry and Ranging spacecraft (MESSENGER)...

  11. Service platforms management strategy: case study of an interior design firm

    Directory of Open Access Journals (Sweden)

    Leonel Del Rey de Melo Filho

    2015-03-01

    Full Text Available Platform management is a strategic tool for firms of various sizes, although it demands studies in the service sector. The aim of this paper is to investigate a use of platform management, designed to reach flexibility and operational dynamics in service projects. The studied platform is evaluated as a strategic resource in a particular case. The contributions of the service platform were explored from Resource-Based View (RBV and Service Marketing (SM perspectives, to study their effects on firms’ performance. The research strategy used was an exploratory case study in an interior design firm. The data collection techniques included a participant observation, document analysis and a focus group with firm managers. The research demonstrated that platform management is a strategic resource that assists with the planning of internal capabilities, market positioning, and provides better customer service.

  12. The interior of axisymmetric and stationary black holes: Numerical and analytical studies

    International Nuclear Information System (INIS)

    Ansorg, Marcus; Hennig, Joerg

    2011-01-01

    We investigate the interior hyperbolic region of axisymmetric and stationary black holes surrounded by a matter distribution. First, we treat the corresponding initial value problem of the hyperbolic Einstein equations numerically in terms of a single-domain fully pseudo-spectral scheme. Thereafter, a rigorous mathematical approach is given, in which soliton methods are utilized to derive an explicit relation between the event horizon and an inner Cauchy horizon. This horizon arises as the boundary of the future domain of dependence of the event horizon. Our numerical studies provide strong evidence for the validity of the universal relation A + A - (8πJ) 2 where A + and A - are the areas of event and inner Cauchy horizon respectively, and J denotes the angular momentum. With our analytical considerations we are able to prove this relation rigorously.

  13. Technology Solutions Case Study: Interior Foundation Insulation Upgrade-Minneapolis Residence

    Energy Technology Data Exchange (ETDEWEB)

    None

    2013-10-01

    This interior foundation project employed several techniques to improve performance and mitigate moisture issues: dimple mat; spray polyurethane foam insulation; moisture and thermal management systems for the floor; and paperless gypsum board and steel framing.

  14. 2012 Oregon Department of Interior, Bureau of Land Management (BLM) Lidar: Panther Creek Study Area

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Oregon Department of Interior, Bureau of Land Management (BLM) contracted with Watershed Sciences, Inc. to collect high resolution topographic LiDAR data for...

  15. Features of cadets’ adaptation universities Ukrainian Interior Ministry to study the art of sambo

    Directory of Open Access Journals (Sweden)

    V.V. Serebryak

    2014-05-01

    Full Text Available Purpose : to study the problem of adaptation of students to the study of throwing techniques Sambo in the educational process of professional orientation. Material : the study involved 53 first-year cadet. Also 8 teachers - experts. Results : the initial study of the features of self-defense techniques without weapons in the universities of the Interior Ministry of Ukraine. The factors that impede the development of technical action: lack of preparedness of students on basic psychophysical parameters, the desire to avoid pain when you fall; big breaks between classes. Developed a set of special exercises aimed at improving the mental and physical qualities of the future police officers. Complex promotes adaptation to the study of self-defense techniques without weapons. An efficiency of specific exercises to improve motor skills formation and neutralization of negative factors. Conclusions : recommend the use in the educational process special physical training specific exercises. Exercises gradually become more complex in structure as close as possible to the difficult coordination in unarmed combat.

  16. Comparative Study of Two Daylighting Analysis Methods with Regard to Window Orientation and Interior Wall Reflectance

    Directory of Open Access Journals (Sweden)

    Yeo Beom Yoon

    2014-09-01

    Full Text Available The accuracy and speed of the daylighting analysis developed for use in EnergyPlus is better than its predecessors. In EnergyPlus, the detailed method uses the Split-flux algorithm whereas the DElight method uses the Radiosity algorithm. Many existing studies have addressed the two methods, either individually or compared with other daylight analysis methods like Ray tracing but still there is lack of detailed comparative study of these two methods. Our previous studies show that the Split-flux method overestimates the illuminance, especially for the areas away from the window. The Radiosity method has the advantage of accurately predicting this illuminance because of how it deals with the diffuse light. For this study, the EnergyPlus model, which has been calibrated using data measured in a real building in previous studies, has also been used. The calibrated model has a south oriented window only. This model is then used to analyze the interior illuminance inside the room for north, west and east orientation of the window by rotating the model and by changing the wall reflectance of the model with south oriented window. Direct and diffuse component of the illuminance as well as the algorithms have been compared for a detailed analysis.

  17. Experimental and Numerical Studies of Mechanically- and Convectively-Driven Turbulence in Planetary Interiors

    Science.gov (United States)

    Grannan, Alexander Michael

    2017-08-01

    characteristics of the resulting turbulence are investigated using meridional views to identify the dominate modes and spatial location of the turbulence. For the first time, measurements of the velocity in the equatorial plane are coupled with high resolution numerical simulations of the full flow field in identical geometry to characterize the instability mechanism, energy deposited into the fluid layer, and long-term evolution of the flow. The velocities determined through laboratory and numerical simulations when extrapolated to planets allow me to argue that the dynamics of mechanical forcing in low viscosity fluids may an important role as new and potentially large source of dissipation in planetary interiors. To study convective forcing, I have modified and performed a set of rotating and non-rotating hydrodynamic convection experiments using water as well as rotating and non-rotating magnetohydrodynamic convection in gallium. These studies are performed in a cylindrical geometry representing a model of high latitude planetary core style convection wherein the axis of rotation and gravity are aligned. For the studies using water, the steady columns that are characteristic of rotating convection and present in the dynamo models are likely to destabilize at the more extreme planetary parameters giving way to transitions to more complex styles of rotating turbulent flow. In the studies of liquid metal where the viscosity is lower, the onset of rotating convection occurs through oscillatory columnar convection well below the onset of steady columns. Such oscillatory modes are not represented at the parameters used by current dynamo models. Furthermore a suite of laboratory experiments shows that the imposition of rotational forces and magnetic forces both separately and together generate zeroeth order flow transitions that change the fundamental convective modes and heat transfer. Such regimes are more easily accessible to laboratory experiments then to numerical simulations

  18. Prescribed burning in the interior ponderosa pine type of northeastern California . . . a preliminary study

    Science.gov (United States)

    Donald T. Gordon

    1967-01-01

    Three prescribed burns, made in 1959-62, in the interior ponderosa pine type of northeastern California are described in terms of meteorological factors, fire behavior, and effects of burning. Results were generally unsatisfactory. Factors that limit the usefulness of prescribed burning for reducing fuel hazard or for thinning in young-growth stands include stand...

  19. Amino acid pair- and triplet-wise groupings in the interior of α-helical segments in proteins.

    Science.gov (United States)

    de Sousa, Miguel M; Munteanu, Cristian R; Pazos, Alejandro; Fonseca, Nuno A; Camacho, Rui; Magalhães, A L

    2011-02-21

    A statistical approach has been applied to analyse primary structure patterns at inner positions of α-helices in proteins. A systematic survey was carried out in a recent sample of non-redundant proteins selected from the Protein Data Bank, which were used to analyse α-helix structures for amino acid pairing patterns. Only residues more than three positions apart from both termini of the α-helix were considered as inner. Amino acid pairings i, i+k (k=1, 2, 3, 4, 5), were analysed and the corresponding 20×20 matrices of relative global propensities were constructed. An analysis of (i, i+4, i+8) and (i, i+3, i+4) triplet patterns was also performed. These analysis yielded information on a series of amino acid patterns (pairings and triplets) showing either high or low preference for α-helical motifs and suggested a novel approach to protein alphabet reduction. In addition, it has been shown that the individual amino acid propensities are not enough to define the statistical distribution of these patterns. Global pair propensities also depend on the type of pattern, its composition and orientation in the protein sequence. The data presented should prove useful to obtain and refine useful predictive rules which can further the development and fine-tuning of protein structure prediction algorithms and tools. Copyright © 2010 Elsevier Ltd. All rights reserved.

  20. Integrating sustainability in interior design studio

    OpenAIRE

    Karslı, Umut Tuğlu

    2013-01-01

    Teaching methods on concept of sustainability are frequently searched in the interior architecture education. The purpose of this study is to propose a model for integrating sustainability in interior design studio. In this context, the first part of the research defines relationship between sustainability and interior architecture and determines sustainable interior design principles. In the second part, an interior design studio model is proposed and principles determined in the first part ...

  1. Photorealistic lighting and rendering of a small apartment interior : a case study with 3DS Max and V-Ray

    OpenAIRE

    Kämä, Antti

    2016-01-01

    The purpose of this thesis was to examine the process of creating photorealistic lighting for a small apartment interior and the process of rendering that interior. Both nighttime and daytime lighting was created for the 3D interior scene modeled beforehand. The 3D interior scene was comprised the walls, windows and the largest furniture of the apartment excluding the bathroom. The theoretical section of the thesis focuses on different settings and features which in combination influence...

  2. Frequency-independent radiation modes of interior sound radiation: Experimental study and global active control

    Science.gov (United States)

    Hesse, C.; Papantoni, V.; Algermissen, S.; Monner, H. P.

    2017-08-01

    Active control of structural sound radiation is a promising technique to overcome the poor passive acoustic isolation performance of lightweight structures in the low-frequency region. Active structural acoustic control commonly aims at the suppression of the far-field radiated sound power. This paper is concerned with the active control of sound radiation into acoustic enclosures. Experimental results of a coupled rectangular plate-fluid system under stochastic excitation are presented. The amplitudes of the frequency-independent interior radiation modes are determined in real-time using a set of structural vibration sensors, for the purpose of estimating their contribution to the acoustic potential energy in the enclosure. This approach is validated by acoustic measurements inside the cavity. Utilizing a feedback control approach, a broadband reduction of the global acoustic response inside the enclosure is achieved.

  3. Interior design and healing architecture

    DEFF Research Database (Denmark)

    Mogensen, Jeppe; Poulsen, Søren Bolvig; Hansen, Allan Grutt

    2015-01-01

    . Through a mixed-method study, 43 patients from the outpatient-lung department at Hospital Vendsyssel, Denmark were presented with different types of furniture and materials and were asked about their preferences. Additional questions on their experience of the hospital interior were asked to guide......Hospital design is today influenced by the design concept healing architecture, stating that the patients’ healing process is promoted through accommodating physical surroundings. However, despite the increasing amount of research in the field of healing architecture, research on interior design...... and materials are rather limited. To compliment research in hospital interior design with particular focus on the use of interior textiles, this pilot study explores if the patients’ preferences for more home-like hospital interiors can be linked to a preference for textile-based furniture and materials...

  4. Reconstruction for interior region-of-interest inverse geometry computed tomography: preliminary study

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Dong Su; Kim, Tae Ho; Kim, Kyeong Hyeon; Yoon, Do Kun; Suh, Tae Suk [Dept. of Biomedical Engineering, Research Institute of Biomedical Engineering, College of Medicine, The Catholic University of Korea, Seoul (Korea, Republic of); Kang, Seong Hee [Dept. of Radiation Oncology, Seoul National University Hospital, Seoul (Korea, Republic of); Cho, Min Seok [Dept. of Radiation Oncology, Asan Medical Center, Seoul (Korea, Republic of); Noh, Yu Yoon [Dept. of Radiation Oncology, Eulji University Hospital, Daejeon (Korea, Republic of)

    2017-04-15

    The inverse geometry computed tomography (IGCT) composed of multiple source and small size detector has several merits such as reduction of scatter effect and large volumetric imaging within one rotation without cone-beam artifact, compared to conventional cone-beam computed tomography (CBCT). By using this multi-source characteristics, we intend to present a selective and multiple interior region-of-interest (ROI) imaging method by using a designed source on-off sequence of IGCT. ROI-IGCT showed comparable image quality and has the capability to provide multi ROI image within a rotation. In this regard, it seems to be useful for diagnostic or image guidance for radiotherapy. ROI-IGCT showed comparable image quality and has the capability to provide multi ROI image within a rotation. Projection of ROI-IGCT is performed by selective irradiation, hence unnecessary imaging dose to non-interest region can be reduced. In this regard, it seems to be useful for diagnostic or image guidance for radiotherapy.

  5. Study on Optimum Design of Multi-Pole Interior Permanent Magnet Motor with Concentrated Windings

    Science.gov (United States)

    Kano, Yoshiaki; Kosaka, Takashi; Matsui, Nobuyuki

    Interior Permanent Magnet Synchronous Motors (IPMSM) have been found in many applications because of their high-power density and high-efficiency. The existence of a complex magnetic circuit, however, makes the design of this machine quite complicated. Although FEM is commonly used in the IPMSM design, one of disadvantages is long CPU times. This paper presents a simple non-linear magnetic analysis for a multi-pole IPMSM as a preliminary design tool of FEM. The proposed analysis consists of the geometric-flux-tube-based equivalent-magnetic-circuit model. The model includes saturable permeances taking into account the local magnetic saturation in the core. As a result, the proposed analysis is capable of calculating the flux distribution and the torque characteristics in the presence of magnetic saturation. The effectiveness of the proposed analysis is verified by comparing with FEM in terms of the analytical accuracy and the computation time for two IPMSMs with different specifications. After verification, the proposed analysis-based optimum design is examined, by which the minimization of motor volume is realized while satisfying the necessary maximum torque for target applications.

  6. Innovative Technique for Noise Reduction in Spacecraft Doppler Tracking for Planetary Interior Studies

    Science.gov (United States)

    Notaro, V.; Armstrong, J. W.; Asmar, S.; Di Ruscio, A.; Iess, L.; Mariani, M., Jr.

    2017-12-01

    Precise measurements of spacecraft range rate, enabled by two-way microwave links, are used in radio science experiments for planetary geodesy including the determination of planetary gravitational fields for the purpose of modeling the interior structure. The final accuracies in the estimated gravity harmonic coefficients depend almost linearly on the Doppler noise in the link. We ran simulations to evaluate the accuracy improvement attainable in the estimation of the gravity harmonic coefficients of Venus (with a representative orbiter) and Mercury (with the BepiColombo spacecraft), using our proposed innovative noise-cancellation technique. We showed how the use of an additional, smaller and stiffer, receiving-only antenna could reduce the leading noise sources in a Ka-band two-way link such as tropospheric and antenna mechanical noises. This is achieved through a suitable linear combination (LC) of Doppler observables collected at the two antennas at different times. In our simulations, we considered a two-way link either from NASA's DSS 25 antenna in California or from ESA's DSA-3 antenna in Malargüe (Argentina). Moreover, we selected the 12-m Atacama Pathfinder EXperiment (APEX) in Chile as the three-way antenna and developed its tropospheric noise model using available atmospheric data and mechanical stability specifications. For an 8-hour Venus orbiter tracking pass in Chajnantor's winter/night conditions, the accuracy of the simulated LC Doppler observable at 10-s integration time is 6 mm/s, to be compared to 23 mm/s for the two-way link. For BepiColombo, we obtained 16.5 mm/s and 35 mm/s, respectively for the LC and two-way links. The benefits are even larger at longer time scales. Numerical simulations indicate that such noise reduction would provide significant improvements in the determination of Venus's and Mercury's gravity field coefficients. If implemented, this noise-reducing technique will be valuable for planetary geodesy missions, where the

  7. Colour terms in the interior design process

    OpenAIRE

    Attiah, DY; Cheung, TLV; Westland, S; Bromilow, D

    2015-01-01

    Colour is a very important topic that interior designers need to consider. Considerable research has been conducted in the area of colour application in interior design; in this study we are concerned with colour terms in interior design, mainly the terms designers use and know about. Fifteen interior designers with varied professional backgrounds, but based in the Middle East (Saudi Arabia, Dubai, Bahrain, Lebanon, Egypt, and Turkey), were interviewed. Previously we reported that fourteen ou...

  8. Desain Interior Gedung Kesenian Jakarta

    Directory of Open Access Journals (Sweden)

    Sri Rachmayanti

    2011-04-01

    Full Text Available The purpose of this study was to examine the interior design of Gedung Kesenian Jakarta in detail. Another thing is to obtain complete data and analyze the interior design development of GKJ.  This study will described in terms of design style and different designs since the early period of this building, the arrival of the Dutch until the present era. Besides aesthetic of interior design, it will review technical factors in the building that related to its interior design, such as acoustic, air conditioning, lighting system, sound system. This research is based on data literartures and interviews with the GKJ. In conclusion, it will discuss the existence of GKJ in relation to local identity, culture and heritage.   

  9. NMR Studies of Protein Hydration and Protein-Ligand Interactions

    Science.gov (United States)

    Chong, Yuan

    Water on the surface of a protein is called hydration water. Hydration water is known to play a crucial role in a variety of biological processes including protein folding, enzymatic activation, and drug binding. Although the significance of hydration water has been recognized, the underlying mechanism remains far from being understood. This dissertation employs a unique in-situ nuclear magnetic resonance (NMR) technique to study the mechanism of protein hydration and the role of hydration in alcohol-protein interactions. Water isotherms in proteins are measured at different temperatures via the in-situ NMR technique. Water is found to interact differently with hydrophilic and hydrophobic groups on the protein. Water adsorption on hydrophilic groups is hardly affected by the temperature, while water adsorption on hydrophobic groups strongly depends on the temperature around 10 C, below which the adsorption is substantially reduced. This effect is induced by the dramatic decrease in the protein flexibility below 10 C. Furthermore, nanosecond to microsecond protein dynamics and the free energy, enthalpy, and entropy of protein hydration are studied as a function of hydration level and temperature. A crossover at 10 C in protein dynamics and thermodynamics is revealed. The effect of water at hydrophilic groups on protein dynamics and thermodynamics shows little temperature dependence, whereas water at hydrophobic groups has stronger effect above 10 C. In addition, I investigate the role of water in alcohol binding to the protein using the in-situ NMR detection. The isotherms of alcohols are first measured on dry proteins, then on proteins with a series of controlled hydration levels. The free energy, enthalpy, and entropy of alcohol binding are also determined. Two distinct types of alcohol binding are identified. On the one hand, alcohols can directly bind to a few specific sites on the protein. This type of binding is independent of temperature and can be

  10. The State of Environmentally Sustainable Interior Design Practice

    OpenAIRE

    Mihyun Kang; Denise A. Guerin

    2009-01-01

    Problem statement: Research that investigates how interior designers use environmentally sustainable interior design criteria in their design solutions has not been done. To provide a base to develop education strategies for sustainable interior design, this study examined the state of environmentally sustainable interior design practice. Approach: A national, Internet-based survey of interior design practitioners was conducted. To collect data, the random sample of US interior design practit...

  11. Modularity in protein structures: study on all-alpha proteins.

    Science.gov (United States)

    Khan, Taushif; Ghosh, Indira

    2015-01-01

    Modularity is known as one of the most important features of protein's robust and efficient design. The architecture and topology of proteins play a vital role by providing necessary robust scaffolds to support organism's growth and survival in constant evolutionary pressure. These complex biomolecules can be represented by several layers of modular architecture, but it is pivotal to understand and explore the smallest biologically relevant structural component. In the present study, we have developed a component-based method, using protein's secondary structures and their arrangements (i.e. patterns) in order to investigate its structural space. Our result on all-alpha protein shows that the known structural space is highly populated with limited set of structural patterns. We have also noticed that these frequently observed structural patterns are present as modules or "building blocks" in large proteins (i.e. higher secondary structure content). From structural descriptor analysis, observed patterns are found to be within similar deviation; however, frequent patterns are found to be distinctly occurring in diverse functions e.g. in enzymatic classes and reactions. In this study, we are introducing a simple approach to explore protein structural space using combinatorial- and graph-based geometry methods, which can be used to describe modularity in protein structures. Moreover, analysis indicates that protein function seems to be the driving force that shapes the known structure space.

  12. Iodine deficiency in children: A comparative study in two districts of south-interior Karnataka, India

    Directory of Open Access Journals (Sweden)

    Mansoor Ahmed

    2014-01-01

    Full Text Available Introduction: Iodine is an essential component of the hormones produced by the thyroid gland that are essential for mammalian life. Although goiter is the most visible sequelae of iodine deficiency, the major impact of hypothyroidism as a result of iodine deficiency is impaired neurodevelopment, particularly early in life. According to the World Health Organization, it is the single most preventable cause of mental retardation and brain damage. The simplest, most effective and inexpensive preventive method is the consumption of iodized salt. Objectives: The objective of the following study is to estimate the prevalence of goiter in children in the rural areas of Mysore and Coorg districts in India and estimate iodine levels in salt samples. Materials and Methods: A cross-sectional study in the age group of 6-12 years, using population proportionate to size systematic sampling method. The total sample size was 10,082: out of which 5337 was from Mysore and the rest from Coorg district. Clinical examination of the thyroid gland was done and salt samples collected for the estimation of Iodine. Results: The total prevalence of goiter was 19.01% in children of 6-12 years in Coorg district and 8.77% in Mysore district and it was more in females than in males. Conclusions: It was observed that iodine deficiency disorders is endemic in both districts, with a prevalence of 19.01% in children aged 6-12 years in Coorg district and 8.77% in Mysore district. Analysis of salt samples suggested that most of the samples were inadequately iodised (73.92% in Coorg and 45.92% in Mysore.

  13. Iodine deficiency in children: A comparative study in two districts of south-interior Karnataka, India.

    Science.gov (United States)

    Ahmed, Mansoor; Zama, Syed Y; Nagarajarao, Vadiraja; Khan, Mudassir A

    2014-01-01

    Iodine is an essential component of the hormones produced by the thyroid gland that are essential for mammalian life. Although goiter is the most visible sequelae of iodine deficiency, the major impact of hypothyroidism as a result of iodine deficiency is impaired neurodevelopment, particularly early in life. According to the World Health Organization, it is the single most preventable cause of mental retardation and brain damage. The simplest, most effective and inexpensive preventive method is the consumption of iodized salt. The objective of the following study is to estimate the prevalence of goiter in children in the rural areas of Mysore and Coorg districts in India and estimate iodine levels in salt samples. A cross-sectional study in the age group of 6-12 years, using population proportionate to size systematic sampling method. The total sample size was 10,082: out of which 5337 was from Mysore and the rest from Coorg district. Clinical examination of the thyroid gland was done and salt samples collected for the estimation of Iodine. The total prevalence of goiter was 19.01% in children of 6-12 years in Coorg district and 8.77% in Mysore district and it was more in females than in males. It was observed that iodine deficiency disorders is endemic in both districts, with a prevalence of 19.01% in children aged 6-12 years in Coorg district and 8.77% in Mysore district. Analysis of salt samples suggested that most of the samples were inadequately iodised (73.92% in Coorg and 45.92% in Mysore).

  14. Coevolution study of mitochondria respiratory chain proteins: toward the understanding of protein--protein interaction.

    Science.gov (United States)

    Yang, Ming; Ge, Yan; Wu, Jiayan; Xiao, Jingfa; Yu, Jun

    2011-05-20

    Coevolution can be seen as the interdependency between evolutionary histories. In the context of protein evolution, functional correlation proteins are ever-present coordinated evolutionary characters without disruption of organismal integrity. As to complex system, there are two forms of protein--protein interactions in vivo, which refer to inter-complex interaction and intra-complex interaction. In this paper, we studied the difference of coevolution characters between inter-complex interaction and intra-complex interaction using "Mirror tree" method on the respiratory chain (RC) proteins. We divided the correlation coefficients of every pairwise RC proteins into two groups corresponding to the binary protein--protein interaction in intra-complex and the binary protein--protein interaction in inter-complex, respectively. A dramatical discrepancy is detected between the coevolution characters of the two sets of protein interactions (Wilcoxon test, p-value = 4.4 × 10(-6)). Our finding reveals some critical information on coevolutionary study and assists the mechanical investigation of protein--protein interaction. Furthermore, the results also provide some unique clue for supramolecular organization of protein complexes in the mitochondrial inner membrane. More detailed binding sites map and genome information of nuclear encoded RC proteins will be extraordinary valuable for the further mitochondria dynamics study. Copyright © 2011. Published by Elsevier Ltd.

  15. Microbial volatile organic compounds in moldy interiors: a long-term climate chamber study.

    Science.gov (United States)

    Schuchardt, Sven; Strube, Andrea

    2013-06-01

    The present study simulated large-scale indoor mold damage in order to test the efficiency of air sampling for the detection of microbial volatile organic compounds (MVOCs). To do this, a wallpaper damaged by condensation was stored in a climate chamber (representing a hypothetical test room of 40 m(3) volume) and was inoculated with 14 typical indoor fungal strains. The chamber ventilation conditions were adjusted to common values found in moldy homes, and the mold growth was allowed to continue to higher than average values. The MVOC content of the chamber air was analyzed daily for a period of 105 days using coupled gas chromatography/mass spectrometry (GC-MS). This procedure guarantees MVOC profiling without external factors such as outdoor air, building materials, furniture, and occupants. However, only nine MVOCs could be detected during the sampling period, which indicates that the very low concentrated MVOCs are hardly accessible, even under these favorable conditions. Furthermore, most of the MVOCs that were detected cannot be considered as reliable indicators of mold growth in indoor environments. © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  16. Evaluation of Standard Concepts Design of Library Interior Physical Environment (Case Study at University of Ma Chung

    Directory of Open Access Journals (Sweden)

    Debri Haryndia Putri

    2016-12-01

    Full Text Available Currently the function of a room is not only used as a shelter, the function of the room itself to be increased as a refreshing or relaxation area for users to follow the development of creativity and technology in the field of design. The comfortable factor becomes the main factor that indicates a successful process of creating a space. No exception library. The nature of library seemed stiff because of its function as a place to read, now can be developed and made into more dynamic with the special design concepts or color patterns used. Libraries can be created a special concept that suits the characteristics of the users themselves. Most users of the library, especially in college libraries are teenagers. Naturally, teenagers like to gather with their friends and we have to facilitate this activity in our library design concept. In addition we can also determine the needs of users through research by questionnaire method. The answers of users can be mapped and drawn conclusions. To explore the research, the author reviewed some literature about library interior design and observed the library of Ma Chung University as a case study. The combined results of the method can be concluded and the discovery of ideal standards of physical environment. So, the library can be made as a comfortable reading environment so as to increased interest in reading behavior and the frequent visits of students in the library.

  17. Analytical study of interior noise control by fuselage design techniques on high-speed, propeller-driven aircraft

    Science.gov (United States)

    Revell, J. D.; Balena, F. J.; Koval, L. R.

    1980-01-01

    The acoustical treatment mass penalties required to achieve an interior noise level of 80 dBA for high speed, fuel efficient propfan-powered aircraft are determined. The prediction method used is based on theory developed for the outer shell dynamics, and a modified approach for add-on noise control element performance. The present synthesis of these methods is supported by experimental data. Three different sized aircraft are studied, including a widebody, a narrowbody and a business sized aircraft. Noise control penalties are calculated for each aircraft for two kinds of noise control designs: add-on designs, where the outer wall structure cannot be changed, and advanced designs where the outer wall stiffness level and the materials usage can be altered. For the add-on designs, the mass penalties range from 1.7 to 2.4 percent of the takeoff gross weight (TOGW) of the various aircraft, similar to preliminary estimates. Results for advanced designs show significant reductions of the mass penalties. For the advanced aluminum designs the penalties are 1.5% of TOGW, and for an all composite aircraft the penalties range from 0.74 to 1.4% of TOGW.

  18. Sustainable Commercial Interior Design

    OpenAIRE

    Keane, Órla

    2009-01-01

    This dissertation looks at the environmental benefits of 3 key areas in relation to interior design: Energy, Water and Air; energy efficient lighting, water efficient plumbing fixtures and the effects of interior materials and finishes on indoor air quality. Qualitative research methodology: Extensive literature review of texts available on these topics, and also of the relevant building codes and environmental legislation applicable to Irish interior designers and the built environment. ...

  19. Interior intrusion detection systems

    Energy Technology Data Exchange (ETDEWEB)

    Rodriguez, J.R.; Matter, J.C. (Sandia National Labs., Albuquerque, NM (United States)); Dry, B. (BE, Inc., Barnwell, SC (United States))

    1991-10-01

    The purpose of this NUREG is to present technical information that should be useful to NRC licensees in designing interior intrusion detection systems. Interior intrusion sensors are discussed according to their primary application: boundary-penetration detection, volumetric detection, and point protection. Information necessary for implementation of an effective interior intrusion detection system is presented, including principles of operation, performance characteristics and guidelines for design, procurement, installation, testing, and maintenance. A glossary of sensor data terms is included. 36 figs., 6 tabs.

  20. Interior intrusion detection systems

    International Nuclear Information System (INIS)

    Rodriguez, J.R.; Matter, J.C.; Dry, B.

    1991-10-01

    The purpose of this NUREG is to present technical information that should be useful to NRC licensees in designing interior intrusion detection systems. Interior intrusion sensors are discussed according to their primary application: boundary-penetration detection, volumetric detection, and point protection. Information necessary for implementation of an effective interior intrusion detection system is presented, including principles of operation, performance characteristics and guidelines for design, procurement, installation, testing, and maintenance. A glossary of sensor data terms is included. 36 figs., 6 tabs

  1. Radioactive Lysine in Protein Metabolism Studies

    Science.gov (United States)

    Miller, L. L.; Bale, W. F.; Yuile, C. L.; Masters, R. E.; Tishkoff, G. H.; Whipple,, G. H.

    1950-01-09

    Studies of incorporation of DL-lysine in various body proteins of the dog; the time course of labeled blood proteins; and apparent rate of disappearance of labeled plasma proteins for comparison of behavior of the plasma albumin and globulin fractions; shows more rapid turn over of globulin fraction.

  2. High pressure cosmochemistry of major planetary interiors: Laboratory studies of the water-rich region of the system ammonia-water

    Science.gov (United States)

    Nicol, Malcolm; Johnson, Mary; Boone, Steven; Cynn, Hyunchee

    1987-01-01

    Several studies relative to high pressure cosmochemistry of major planetary interiors are summarized. The behavior of gas-ice mixtures at very high pressures, studies of the phase diagram of (NH3) sub x (H2O) sub 1-x at pressures to 5GPa and temperatures from 240 to 370 K, single crystal growth of ammonia dihydrate at room temperature in order to determine their structures by x-ray diffraction, spectroscopy of chemical reactions during shock compression in order to evaluate how the reactions affect the interpretation of equation of state data obtained by shock methods, and temperature and x-ray diffraction measurements made on resistively heated wire in diamond anvil cells in order to obtain phase and structural data relevant to the interiors of terrestrial planets are among the studies discussed.

  3. Study of the earth's deep interior and crystallography. X-ray and neutron diffraction experiments under high pressures

    International Nuclear Information System (INIS)

    Yagi, Takehiko

    2014-01-01

    History of the study of the Earth's deep interior was reviewed. In order to understand Earth's deep interior from the view point of materials science, X-ray diffraction under high pressure and high temperature played very important role. Use of synchrotron radiation dramatically advanced this experimental technique and it is now possible to make precise X-ray study under the P-T conditions corresponding even to the center of the Earth. In order to clarify the behavior of light elements such as hydrogen, however, studies using neutron diffraction are also required. A new neutron beam line dedicated for high-pressure science is constructed at J-PARC and is now ready for use. (author)

  4. Interior acoustic cloak

    Directory of Open Access Journals (Sweden)

    Wael Akl

    2014-12-01

    Full Text Available Acoustic cloaks have traditionally been intended to externally surround critical objects to render these objects acoustically invisible. However, in this paper, the emphasis is placed on investigating the application of the acoustic cloaks to the interior walls of acoustic cavities in an attempt to minimize the noise levels inside these cavities. In this manner, the acoustic cloaks can serve as a viable and efficient alternative to the conventional passive noise attenuation treatments which are invariably heavy and bulky. The transformation acoustics relationships that govern the operation of this class of interior acoustic cloaks are presented. Physical insights are given to relate these relationships to the reasons behind the effectiveness of the proposed interior acoustic cloaks. Finite element models are presented to demonstrate the characteristics of interior acoustic cloaks used in treating the interior walls of circular and square cavities both in the time and frequency domains. The obtained results emphasize the effectiveness of the proposed interior cloaks in eliminating the reflections of the acoustic waves from the walls of the treated cavities and thereby rendering these cavities acoustically quiet. It is important to note here that the proposed interior acoustic cloaks can find applications in acoustic cavities such as aircraft cabins and auditoriums as well as many other critical applications.

  5. Dinâmicas e processos de inovaçâo em regiôes do interior de Portugal: caso de estudo = Dynamics and processes of innovation in the interior regions of Portugal: a case study

    Directory of Open Access Journals (Sweden)

    Maria Manuela Natario

    2011-12-01

    Full Text Available El presente trabajo tiene como objetivo analizar la dinámica y los procesos de innovación en las regiones interiores del centro de Portugal buscando identificar los factores que estimulan la dinámica territorial de la innovación. La preocupación por la dinámica de la innovación ha sido objeto de varios estudios en el contexto de los sistemas regionales de innovación y, más recientemente, se encuadra en el desarrollo del Modelo “Triple Hélix” (Etzkowitz y Leydesdorff, 2000; Dzisah y Etzkowitz, 2009. Este modelo integra el estudio de la interacción entre las hélices para promover la innovación. El estudio empírico se centra en las empresas de tres distritos interiores de la zona Centro de Portugal (Castelo Branco, Guarda y Viseu. Desde el punto de vista de la metodología, para la realización del estudio se envió un cuestionario a las empresas de estos tres distritos y se ha utilizado la aplicación de análisis estadístico multivariante “k-means clustering” para detectar patrones de comportamiento de las empresas relativos a su dinámica de innovación respecto al perfil de la región en términos de innovación, al espíritu de iniciativa empresarial, a la cooperación con las instituciones de enseñanza superior y a la proactividad de las instituciones públicas. Para verificar las hipótesis propuestas se recurrió a aplicación de tests de comparación múltiple de valores medios para estudiar las características únicas de cada grupo.The main objective of this paper is analysis the dynamics and processes of innovation in regions of interior centre of Portugal, seeking to identify factors that stimulate the territorial dynamics of innovation. The dynamics of innovation has been the subject of several studies in the context of regional innovation systems and more recently has been considered in the Model "Triple Helix" (Etzkowitz and Leydesdorff, 2000; Dzisah and Etzkowitz, 2009. This model integrates the interaction

  6. Co-Production of Actionable Science: Recommendations to the Secretary of Interior and a San Francisco Case Study

    Science.gov (United States)

    Behar, D. H.; Pfeffer, W. T.; Beier, P.

    2015-12-01

    "Actionable Science provides data, analyses, projections, or tools that can support decisions regarding the management of the risks and impacts of climate change. It is ideally co-produced by scientists and decision makers and creates rigorous and accessible products to meet the needs of stakeholders. (Report to the Secretary of the Interior, Advisory Committee on Climate Change and Natural Resource Science (ACCCNRS), March 30, 2015)During one 17 month period ending in 2013, three major reports on sea level rise from three highly respected science providers produced three divergent estimates of sea level rise. These reports collectively flummoxed the lay reader seeking direction for adaptation planning. Guidance documents soon emerged from state entities which caused further confusion. The City and County of San Francisco began developing "Guidance for Incorporating Sea Level Rise into Capital Planning" in 2013 at the direction of San Francisco Mayor Edwin Lee (http://onesanfrancisco.org/staff-resources/sea-level-rise-guidance/). The first task in developing this Guidance was to convert these highly technical reports into "actionable science." This required extensive expert elicitation to tease out their meaning and use value for decision making. This process, which resulted in detailed guidance on the use of SLR science in planning, is increasingly being called "co-production."Co-production requires both scientist and decision-maker to hear the other's perspective, reflect upon the decision-maker's precise needs, and translate peer review science into lay language and practical advice for decision making. The co-production dynamic was the subject of extensive discussion in the federal Advisory Committee on Climate Change and Natural Resource Science. The ACCCNRS recommendations (https://nccwsc.usgs.gov/acccnrs) include not only the new definition of Actionable Science cited above, but also a "How-To-Guide" that outlines principles for successfully creating a co

  7. Functional studies on the phosphatidychloride transfer protein

    NARCIS (Netherlands)

    Brouwer, A.P.M. de

    2002-01-01

    The phosphatidylcholine transfer protein (PC-TP) has been studied for over 30 years now. Despite extensive research concerning the biochemical, biophysical and structural properties of PC-TP, the function of this protein is still elusive. We have studied in vitro the folding and the mechanism of PC

  8. Interior Space: Representation, Occupation, Well-Being and Interiority

    OpenAIRE

    Power, Jacqueline

    2014-01-01

    This article will provide an overview of space as it is understood and engaged with from within the discipline of interior design/interior architecture. Firstly, the term interior will be described. Secondly, the paper will discuss space as a general concept, before exploring what space is speifically for the interior design/interior architecture discipline. How is space understood? What does space "look" like for interuior designers/interior architects?.

  9. Perancangan InteriorInterior World Center” di Surabaya

    OpenAIRE

    Handojo, Renita Olivia

    2014-01-01

    Interior World Center is a place that contain all needs and matters related to world of interior. The main purpose of Interior World Center is to give access and facilitate people in fulfill their needs that concern and correspond with interior world, that is to say with combine and integrate several interior activity into one in corporated place. Inside of this building there are several commercial space related with the interior world. The commercial spaces will support each other in order ...

  10. A study of gizzard nematodes and renal coccidiosis in Canada geese (Branta canadensis interior) of the Mississippi Valley population

    Science.gov (United States)

    Tuggle, Benjamin N.

    1982-01-01

    A total of 309 Mississippi Valley Population Canada geese, Branta canadensis interior, of different sex and age groups was collected from three locations in the Mississippi Flyway from 1979-1981 and examined for gizzard nematodes and renal coccidia. Three species of nematodes were removed from the gizzards, Amidostomum anseris, A. spatulatum, and Epomidiostomum crami. The latter two species are reported from this population of geese for the first time. Gizzard nematodes were found in 95.2% of all Canada geese examined, with A. anseris being the most abundant of the three species. There was no statistically significant difference between immatures and adults in the abundance of total nematodes species however, immature geese carried significantly more A. anseris and adult geese harbored significantly more A. spatulatum and E. crami infections. No significant difference in gizzard worm infections between male and female birds was observed. The abundance of overall gizzard nematodes was greatest in Canada geese from Winisk, Ontario (11.9), but the abundance of worms in southern Illinois geese (10.0) was similar. Geese from Horicon National Wildlife Refuge had the lowest abundance of infection, 7.5. The overall abundance of nematodes showed a general increase the second year of the study in each sex and age group and at each collection area. Each of three species of nematodes was responsible for some degree of damage to the gizzard lining and koilin, but E. crami was the most pathogenic of the species recovered. The occurrence of renal coccidiosis in Canada geese of this flyway is reported for the first time; the etiologic agent is Eimeria clarkei. The oocysts and/or endogenous stages of E. clarkei were present in 6.8% of the Canada geese sampled and this was the only species found. Male and female geese showed no significant differences in E. clarkei infections, however, significantly more immature geese than adult geese were infected with this species. A cell

  11. Color in interior spaces

    OpenAIRE

    Demirörs, Müge Bozbeyli

    1992-01-01

    Ankara : The Department of Interior Architecture and Environmental Design and the Institute of Fine Arts of Bilkent University, 1992. Thesis (Master's) -- -Bilkent University, 1992. Includes bibliographical references leaves 95-99. Color can be approached from different perspectives and disciplines such as, biology, theory, technology, and psychology. This thesis discusses color, from the stand point of interior spaces, which to some extent involves most of these discipli...

  12. Groundwater-Quality Data in the South Coast Interior Basins Study Unit, 2008: Results from the California GAMA Program

    Science.gov (United States)

    Mathany, Timothy M.; Kulongoski, Justin T.; Ray, Mary C.; Belitz, Kenneth

    2009-01-01

    Groundwater quality in the approximately 653-square-mile South Coast Interior Basins (SCI) study unit was investigated from August to December 2008, as part of the Priority Basins Project of the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The GAMA Priority Basins Project was developed in response to Legislative mandates (Supplemental Report of the 1999 Budget Act 1999-00 Fiscal Year; and, the Groundwater-Quality Monitoring Act of 2001 [Sections 10780-10782.3 of the California Water Code, Assembly Bill 599]) to assess and monitor the quality of groundwater used as public supply for municipalities in California, and is being conducted by the U.S. Geological Survey (USGS) in cooperation with the California State Water Resources Control Board (SWRCB). SCI was the 27th study unit to be sampled as part of the GAMA Priority Basins Project. This study was designed to provide a spatially unbiased assessment of the quality of untreated groundwater used for public water supplies within SCI, and to facilitate statistically consistent comparisons of groundwater quality throughout California. Samples were collected from 54 wells within the three study areas [Livermore, Gilroy, and Cuyama] of SCI in Alameda, Santa Clara, San Benito, Santa Barbara, Ventura, and Kern Counties. Thirty-five of the wells were selected using a spatially distributed, randomized grid-based method to provide statistical representation of the study unit (grid wells), and 19 were selected to aid in evaluation of specific water-quality issues (understanding wells). The groundwater samples were analyzed for organic constituents [volatile organic compounds (VOCs), pesticides and pesticide degradates, polar pesticides and metabolites, and pharmaceutical compounds], constituents of special interest [perchlorate and N-nitrosodimethylamine (NDMA)], naturally occurring inorganic constituents [trace elements, nutrients, major and minor ions, silica, total dissolved solids (TDS), and alkalinity

  13. Interior Design Students Perceptions of Sustainability

    Science.gov (United States)

    Stark, Johnnie; Park, Jin Gyu

    2016-01-01

    Purpose: This longitudinal study assessed student perceptions of sustainable design issues in the context of an accredited interior design program. Although literature exists documenting the integration of sustainable strategies into interior design curriculum, more analysis is needed to determine the impact of program experiences on students'…

  14. Relasi Penerapan Elemen Interior Healing Environment Pada Ruang Rawat Inap dalam Mereduksi Stress Psikis Pasien (Studi Kasus: RSUD. Kanjuruhan, Kabupaten Malang

    Directory of Open Access Journals (Sweden)

    Debri Haryndia Putri

    2013-12-01

    Full Text Available The pleasing atmosphere of medical environment is a friendly atmosphere so it can accelerate the adaptation process of patients. However, the medical environment is very often identical with fear, anxiety, and uncertainty that can suppress the immune system so that patients require longer treatment time and even hasten the complications during treatment occur. This study is conducted to analyze how to optimize the application of healing environment interior elements (such: circulation, lighting, color, interior supporting elements: natural elements, the position of social interaction and television inside the treatment room directly affect the patients psychologically. The research is at Kanjuruhan public hospital which has simple and candid interior physical condition. The results demonstrates that the elements of nature and natural lighting are potential to reduce patient stress, given the daily conditions of people who tend to be close to nature. The differences in economic background, culture, and community demographics would produce a different perception in looking at the most ideal and suitable healing elements for their treatment environment.

  15. Prescriptive Methodology as a Generative Tool: A Case Study Conducted at Introductory Interior Design Studio Level in the United Arab Emirates

    Directory of Open Access Journals (Sweden)

    Lina Ahmad

    2017-09-01

    Full Text Available In the U.A.E. (United Arab Emirates, interior design education is often misunderstood as interior decoration, wherein the former is a more comprehensive design approach to spaces formed by structural boundaries and curation of human interaction. The conducted case study addressed a small number of students enrolled in Interior Design Studio I at Zayed University, Abu Dhabi campus. In addition to traditional teaching methods compromised of individual desk critique sessions, group pin-ups and presentations, three innovative methods were implemented as a means of guiding students through the process: direct sequential instruction executed within an assigned time frame, reflection on the surfaced result and use of flat photography or panoramas as means of space communication. Throughout the three implemented stages of the project, and through utilizing the above-described generative methodology, students achieved complex representation and revealed higher spatial order related to human occupation and space inhabitation. This methodology allowed students to channel their work through complex sets of interconnected information and derived an outcome from an accumulative multi-layered resolution. The article presents the process and analyses the achieved outcomes.

  16. Observing Protein & Energy Nutrition (OPEN) Study

    Science.gov (United States)

    The Observing Protein and Energy Nutrition (OPEN) Study was designed to assess dietary measurement error by comparing results from self-reported dietary intake data with four dietary biomarkers: doubly labeled water and urinary nitrogen, sodium, and potassium.

  17. Studying Catabolism of Protein ADP-Ribosylation.

    Science.gov (United States)

    Palazzo, Luca; James, Dominic I; Waddell, Ian D; Ahel, Ivan

    2017-01-01

    Protein ADP-ribosylation is a conserved posttranslational modification that regulates many major cellular functions, such as DNA repair, transcription, translation, signal transduction, stress response, cell division, aging, and cell death. Protein ADP-ribosyl transferases catalyze the transfer of an ADP-ribose (ADPr) group from the β-nicotinamide adenine dinucleotide (β-NAD + ) cofactor onto a specific target protein with the subsequent release of nicotinamide. ADP-ribosylation leads to changes in protein structure, function, stability, and localization, thus defining the appropriate cellular response. Signaling processes that are mediated by modifications need to be finely tuned and eventually silenced and one of the ways to achieve this is through the action of enzymes that remove (reverse) protein ADP-ribosylation in a timely fashion such as PARG, TARG1, MACROD1, and MACROD2. Here, we describe several basic methods used to study the enzymatic activity of de-ADP-ribosylating enzymes.

  18. Interior Design in Architectural Education

    Science.gov (United States)

    Gurel, Meltem O.; Potthoff, Joy K.

    2006-01-01

    The domain of interiors constitutes a point of tension between practicing architects and interior designers. Design of interior spaces is a significant part of architectural profession. Yet, to what extent does architectural education keep pace with changing demands in rendering topics that are identified as pertinent to the design of interiors?…

  19. INTUITION IN INTERIOR DESIGN

    Directory of Open Access Journals (Sweden)

    Irina Solovyova

    2008-11-01

    Full Text Available Intuition enables individuals to develop an understanding of the structure of complex systems. In interior design many decisions are reached intuitively even though the process of formulating solutions may be argued rationally. Intuition is intrinsically intertwined with our collateral experiences, memories, and implicit thought. Design intuition draws on our entire experience, not only on what we consciously isolate as relevant information. In education we prohibit students from relying on their intuition and require solutions based on pure reason. The author of this paper argues for bringing intuitive decision making back into interior design as a legitimate design tactic.

  20. Prefab-Interiority

    DEFF Research Database (Denmark)

    Frier, Marie; Fisker, Anna Marie; Kirkegaard, Poul Henning

    2010-01-01

    qualities is significantly dependent on our constructive ability to economically and production-technically join building elements. Consequently this paper explores the potential for developing interiority as a theory and design principle for transforming constructive challenges within prefab practice....../S. As a research result the paper suggests a positioning of interiority as a theory and design principle for developing a sensuous prefab practice......., and practical realm of prefabrication, leaving the produced houses as monotonous box-like constructions rather than inhabitable homes. But what are the sensuous qualities actually spatially defining a home, and how to formulate design principles for developing and revealing these qualities within prefab...

  1. Interior design for dentistry.

    Science.gov (United States)

    Unthank, M; True, G

    1999-11-01

    In the increasingly complex, competitive and stressful field of dentistry, effectively designed dental offices can offer significant benefits. Esthetic, functional and life-cycle cost issues to be considered when developing your interior design scheme include color, finishes, lighting, furnishings, art and accessories. An appropriately designed dental office serves as a valuable marketing tool for your practice, as well as a safe and enjoyable work environment. Qualified interior design professionals can help you make design decisions that can yield optimum results within your budget.

  2. Meaning of Interior Tomography

    Science.gov (United States)

    Wang, Ge; Yu, Hengyong

    2013-01-01

    The classic imaging geometry for computed tomography is for collection of un-truncated projections and reconstruction of a global image, with the Fourier transform as the theoretical foundation that is intrinsically non-local. Recently, interior tomography research has led to theoretically exact relationships between localities in the projection and image spaces and practically promising reconstruction algorithms. Initially, interior tomography was developed for x-ray computed tomography. Then, it has been elevated as a general imaging principle. Finally, a novel framework known as “omni-tomography” is being developed for grand fusion of multiple imaging modalities, allowing tomographic synchrony of diversified features. PMID:23912256

  3. Biophysical EPR Studies Applied to Membrane Proteins

    Science.gov (United States)

    Sahu, Indra D; Lorigan, Gary A

    2015-01-01

    Membrane proteins are very important in controlling bioenergetics, functional activity, and initializing signal pathways in a wide variety of complicated biological systems. They also represent approximately 50% of the potential drug targets. EPR spectroscopy is a very popular and powerful biophysical tool that is used to study the structural and dynamic properties of membrane proteins. In this article, a basic overview of the most commonly used EPR techniques and examples of recent applications to answer pertinent structural and dynamic related questions on membrane protein systems will be presented. PMID:26855825

  4. Geologic study of the interior Salt Domes of Northeast Texas Salt-Dome basin to investigate their suitability for possible storage of radioactive waste material

    International Nuclear Information System (INIS)

    1976-05-01

    The purpose of this study was to investigate the movement and hydrologic stability of the domes, to identify the domes which appear suitable for further study and consideration, and to outline the additional information needed to evaluate these domes. The growth of the interior salt domes appears to have slowed with geologic time and to have halted altogether. The Bullard, Whitehouse, and Keechi domes probably are not subject to significant dissolution at the present time. However, caprock found at Bullard and Whitehouse indicates that salt dissolution occurred at some period during the past 50 million years since Wilcox was deposited. It is recommended that shallow water wells be drilled and tested

  5. Diagonal chromatography to study plant protein modifications.

    Science.gov (United States)

    Walton, Alan; Tsiatsiani, Liana; Jacques, Silke; Stes, Elisabeth; Messens, Joris; Van Breusegem, Frank; Goormachtig, Sofie; Gevaert, Kris

    2016-08-01

    An interesting asset of diagonal chromatography, which we have introduced for contemporary proteome research, is its high versatility concerning proteomic applications. Indeed, the peptide modification or sorting step that is required between consecutive peptide separations can easily be altered and thereby allows for the enrichment of specific, though different types of peptides. Here, we focus on the application of diagonal chromatography for the study of modifications of plant proteins. In particular, we show how diagonal chromatography allows for studying proteins processed by proteases, protein ubiquitination, and the oxidation of protein-bound methionines. We discuss the actual sorting steps needed for each of these applications and the obtained results. This article is part of a Special Issue entitled: Plant Proteomics--a bridge between fundamental processes and crop production, edited by Dr. Hans-Peter Mock. Copyright © 2016 Elsevier B.V. All rights reserved.

  6. COLOR PERCEPTION IN INTERIOR DESIGN

    OpenAIRE

    ÖZSAVAŞ, Nilay

    2016-01-01

    In this study, it is mentioned about color that is a keyfactor of interior architecture profession. Firstly, space perception, colorand space interaction, effects of space, color and user relationship is explainedexcept color theories and definitions. Within this scope these are scrutinizingboth perception of color in the space and material and lighting issues thathave a big role in perception. Recent searches, practice methods and evaluationwith examples play a part in this article. It is ai...

  7. Probing the Solar Interior

    Indian Academy of Sciences (India)

    Home; Journals; Resonance – Journal of Science Education; Volume 3; Issue 3. Probing the Solar Interior Hearing the Heartbeats of the Sun. Ashok Ambastha. General ... Author Affiliations. Ashok Ambastha1. Joint In-Charge Udaipur Solar Observatory Physical Research laboratory P.O. Box No. 198 Udaipur 313 001, India ...

  8. The theory of discourse in the linguistic scenario: a new route for the clash interior x exterior in the studies of the language

    Directory of Open Access Journals (Sweden)

    Daiany Bonácio

    2017-10-01

    Full Text Available The language has always aroused human interest. Since ancient times, it was discussed by wise men like Aristotle and Plato. Philosophers discoursed, for example, on the relationship between the names and the things which they named, if the relationship was natural or conventional, in an attempt to explain the functioning of the language. Such discussions fomented a question: the studies of the language should focus on what aspect? What is going on inside the subject, in his ability to speak? Or what goes on outside, the manifestation of the interior considering the social? This impasse was extending over the linguistic studies. Faced with the reality described, this article aimed to discuss the impasse between an approach to the language focused on interiority and another focused on the exteriority, tracing a route through language studies from the classics, through the materialist theory of Michel Pêcheux to reach concepts proposed by the philosopher Michel Foucault, which will be used for analysis from a discursive perspective. The Discourse Analysis tries to think Linguistic out of this issue of logicism and sociology: it proposes to look at the discourse, offering another field of study for the language.

  9. Kajian Gaya Interior Pada Restoran Tip Top di Kota Medan

    OpenAIRE

    Kevin

    2016-01-01

    The purpose of this study was to identify / determine the style of interior design that is applied to the Tip Top Restaurant in Medan as well as the public perception of the interior arrangement of Tip Top Restaurant in Medan by using qualitative and quantitative research methods. Qualitative research methods now that the observation / observation, observation of interior elements Tip Top restaurant is analyzed based on the criteria of interior design, this is done in order to ...

  10. Electrophoretic studies on rape seed proteins

    International Nuclear Information System (INIS)

    Chaudry, M.A.; Starr, A.; Bibi, N.

    1992-07-01

    Electrophoresis is a technique which separates biological molecules on the basis of charge and mass properties. The technique is used for separation, purification, characterization and identification of molecules/ compounds. Two major objectives for applications of electrophoresis have been studied in this report i.e. characterization of rape seed proteins and enzymes and identification of rape seed cultivars by polyacrylamide gel electrophoresis (PAGE). Gamma irradiation is being successfully used to create genetic variability and germination which brought about definite changes in the rape seed proteins reflected in different bands. These differences could be used to study variability in crop plants. (A.B.)

  11. Interior intrusion alarm systems

    International Nuclear Information System (INIS)

    Prell, J.A.

    1978-01-01

    In meeting the requirements for the safeguarding of special nuclear material and the physical protection of licensed facilities, the licensee is required to design a physical security system that will meet minimum performance requirements. An integral part of any physical security system is the interior intrusion alarm system. The purpose of this report is to provide the potential user of an interior intrusion alarm system with information on the various types, components, and performance capabilities available so that he can design and install the optimum alarm system for his particular environment. In addition, maintenance and testing procedures are discussed and recommended which, if followed, will help the user obtain the optimum results from his system

  12. INTUITION IN INTERIOR DESIGN

    OpenAIRE

    Irina Solovyova

    2008-01-01

    Intuition enables individuals to develop an understanding of the structure of complex systems. In interior design many decisions are reached intuitively even though the process of formulating solutions may be argued rationally. Intuition is intrinsically intertwined with our collateral experiences, memories, and implicit thought. Design intuition draws on our entire experience, not only on what we consciously isolate as relevant information. In education we prohibit students from relying on t...

  13. Interior acoustic cloak

    OpenAIRE

    Wael Akl; A. Baz

    2014-01-01

    Acoustic cloaks have traditionally been intended to externally surround critical objects to render these objects acoustically invisible. However, in this paper, the emphasis is placed on investigating the application of the acoustic cloaks to the interior walls of acoustic cavities in an attempt to minimize the noise levels inside these cavities. In this manner, the acoustic cloaks can serve as a viable and efficient alternative to the conventional passive noise attenuation treatments which a...

  14. Project management in interior design services

    OpenAIRE

    Şahinoglu, Alp

    1997-01-01

    Ankara : Bilkent University, Department of Interior Architecture and Environmental Design and Institute of Fine Arts, 1997. Thesis (Master's) -- Bilkent University, 1997. Includes bibliographical references. In this study, the concept of project management is analyzed within the framework of interior design services. Project management has been defined as the managing and coordination of all human and physical resources, in order to accomplish the predetermined goals (aim of the proj...

  15. Interior transmission eigenvalues of a rectangle

    International Nuclear Information System (INIS)

    Sleeman, B D; Stocks, D C

    2016-01-01

    The problem of scattering of acoustic waves by an inhomogeneous medium is intimately connected with so called inside–outside duality, in which the interior transmission eigenvalue problem plays a fundamental role. Here a study of the interior transmission eigenvalues for rectangular domains of constant refractive index is made. By making a nonstandard use of the classical separation of variables technique both real and complex eigenvalues are determined. (paper)

  16. OPTIMASI DESAIN INTERIOR UNTUK PENINGKATAN KUALITAS AKUSTIK RUANG AUDITORIUM MULTI-FUNGSI (Studi kasus Auditorium Universitas Kristen Petra, Surabaya

    Directory of Open Access Journals (Sweden)

    Hedy C. Indrani

    2007-01-01

    akustik, kedua bahan akustik di atas dapat dipergunakan dengan praktis karena mampu nmengadaptasi perubahan fungsi, memudahkan dalam pengerjaan, menghemat waktu dan tenaga kerja dalam pemasangan, terutama pada auditorium multi-fungsi yang sudah ada. Kata kunci: auditorium multi-fungsi, optimasi desain interior, peningkatan kualitas akustik ruang.

  17. Int-Soft Interior Hyperideals of Ordered Semihypergroups

    Directory of Open Access Journals (Sweden)

    Asghar Khan

    2017-07-01

    Full Text Available The main theme of this paper is to study ordered semihypergroups in the context of int-soft interior hyperideals. In this paper, the notion of int-soft interior hyperideals are studied and their related properties are discussed. We present characterizations of interior hyperideals in terms of int-soft interior hyperideals. The concepts of int-soft hyperideals and int-soft interior hyperideals coincide in a regular as well as in intra-regular ordered semihypergroups. We prove that every int-soft hyperideal is an int-soft interior hyperideal but the converse is not true which is shown with help of an example. Furthermore we characterize simple ordered semihypergroups by means of int-soft hyperideals and int-soft interior hyperideals.

  18. Fragment molecular orbital method for studying lanthanide interactions with proteins

    Energy Technology Data Exchange (ETDEWEB)

    Tsushima, Satoru [Helmholtz-Zentrum Dresden-Rossendorf e.V., Dresden (Germany). Biophysics; Komeiji, Y. [National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba (Japan); Mochizuki, Y. [Rikkyo Univ., Tokyo (Japan)

    2017-06-01

    The binding affinity of the calcium-binding protein calmodulin towards Eu{sup 3+} was studied as a model for lanthanide protein interactions in the large family of ''EF-hand'' calcium-binding proteins.

  19. A guide to ancient protein studies

    DEFF Research Database (Denmark)

    Hendy, Jessica; Welker, Frido; Demarchi, Beatrice

    2018-01-01

    Palaeoproteomics is an emerging neologism used to describe the application of mass spectrometry-based approaches to the study of ancient proteomes. As with palaeogenomics (the study of ancient DNA), it intersects evolutionary biology, archaeology and anthropology, with applications ranging from....... Additionally, in contrast to the ancient DNA community, no consolidated guidelines have been proposed by which researchers, reviewers and editors can evaluate palaeoproteomics data, in part due to the novelty of the field. Here we present a series of precautions and standards for ancient protein research...

  20. Computational and theoretical studies of globular proteins

    Science.gov (United States)

    Pagan, Daniel L.

    Protein crystallization is often achieved in experiment through a trial and error approach. To date, there exists a dearth of theoretical understanding of the initial conditions necessary to promote crystallization. While a better understanding of crystallization will help to create good crystals suitable for structure analysis, it will also allow us to prevent the onset of certain diseases. The core of this thesis is to model and, ultimately, understand the phase behavior of protein particles in solution. Toward this goal, we calculate the fluid-fluid coexistence curve in the vicinity of the metastable critical point of the modified Lennard-Jones potential, where it has been shown that nucleation is increased by many orders of magnitude. We use finite-size scaling techniques and grand canonical Monte Carlo simulation methods. This has allowed us to pinpoint the critical point and subcritical region with high accuracy in spite of the critical fluctuations that hinder sampling using other Monte Carlo techniques. We also attempt to model the phase behavior of the gamma-crystallins, mutations of which have been linked to genetic cataracts. The complete phase behavior of the square well potential at the ranges of attraction lambda = 1.15 and lambda = 1.25 is calculated and compared with that of the gammaII-crystallin. The role of solvent is also important in the crystallization process and affects the phase behavior of proteins in solution. We study a model that accounts for the contribution of the solvent free-energy to the free-energy of globular proteins. This model allows us to model phase behavior that includes solvent.

  1. Exoplanet's Figure and Its Interior

    Science.gov (United States)

    Mian, Zhang; Cheng-li, Huang

    2018-01-01

    Along with the development of the observing technology, the observation and study on the exoplanets' oblateness and apsidal precession have achieved significant progress. The oblateness of an exoplanet is determined by its interior density profile and rotation period. Between its Love number k2 and core size exists obviously a negative correlation. So oblateness and k2 can well constrain its interior structure. Starting from the Lane-Emden equation, the planet models based on different polytropic indices are built. Then the flattening factors are obtained by solving the Wavre's integro-differential equation. The result shows that the smaller the polytropic index, the faster the rotation, and the larger the oblateness. We have selected 469 exoplanets, which have simultaneously the observed or estimated values of radius, mass, and orbit period from the NASA (National Aeronautics and Space Administration) Exoplanet Archive, and calculated their flattening factors under the two assumptions: tidal locking and fixed rotation period of 10.55 hours. The result shows that the flattening factors are too small to be detected under the tidal locking assumption, and that 28% of exoplanets have the flattening factors larger than 0.1 under the fixed rotation period of 10.55 hours. The Love numbers under the different polytropic models are solved by the Zharkov's approach, and the relation between k2 and core size is discussed.

  2. Immunochemical studies of yellowjacket venom proteins.

    Science.gov (United States)

    King, T P; Alagon, A C; Kuan, J; Sobotka, A K; Lichtenstein, L M

    1983-03-01

    The major proteins of yellowjacket venoms have been isolated and characterized immuno-chemically. They consist of hyaluronidase, phospholipase, and antigen 5. Venoms from three species of yellowjacket were studied. Vespula germanica, V. maculifrons, and V. vulgaris. The phospholipases could be isolated in good yield only when affinity chromatography was used to minimize limited proteolysis. A kallikrein-like peptidase was found present in the yellowjacket venom. Phospholipases from these three species were immunochemically indistinguishable from each other, as were their antigen 5s. Sera from individuals sensitive to yellowjacket venom contained IgE and IgG specific for antigen 5 and phospholipase.

  3. Are current atomistic force fields accurate enough to study proteins in crowded environments?

    Directory of Open Access Journals (Sweden)

    Drazen Petrov

    2014-05-01

    Full Text Available The high concentration of macromolecules in the crowded cellular interior influences different thermodynamic and kinetic properties of proteins, including their structural stabilities, intermolecular binding affinities and enzymatic rates. Moreover, various structural biology methods, such as NMR or different spectroscopies, typically involve samples with relatively high protein concentration. Due to large sampling requirements, however, the accuracy of classical molecular dynamics (MD simulations in capturing protein behavior at high concentration still remains largely untested. Here, we use explicit-solvent MD simulations and a total of 6.4 µs of simulated time to study wild-type (folded and oxidatively damaged (unfolded forms of villin headpiece at 6 mM and 9.2 mM protein concentration. We first perform an exhaustive set of simulations with multiple protein molecules in the simulation box using GROMOS 45a3 and 54a7 force fields together with different types of electrostatics treatment and solution ionic strengths. Surprisingly, the two villin headpiece variants exhibit similar aggregation behavior, despite the fact that their estimated aggregation propensities markedly differ. Importantly, regardless of the simulation protocol applied, wild-type villin headpiece consistently aggregates even under conditions at which it is experimentally known to be soluble. We demonstrate that aggregation is accompanied by a large decrease in the total potential energy, with not only hydrophobic, but also polar residues and backbone contributing substantially. The same effect is directly observed for two other major atomistic force fields (AMBER99SB-ILDN and CHARMM22-CMAP as well as indirectly shown for additional two (AMBER94, OPLS-AAL, and is possibly due to a general overestimation of the potential energy of protein-protein interactions at the expense of water-water and water-protein interactions. Overall, our results suggest that current MD force fields

  4. Preliminary study on chicken feather protein-based wood adhesives

    Science.gov (United States)

    Zehui Jiang; Daochun Qin; Chung-Yun Hse; Monlin Kuo; Zhaohui Luo; Ge Wang; Yan Yu

    2008-01-01

    The objective of this preliminary study was to partially replace phenol in the synthesis of phenol-formaldehyde resin with feather protein. Feather protein–based resins, which contained one part feather protein and two parts phenol, were formulated under the conditions of two feather protein hydrolysis methods (with and without presence of phenol during...

  5. Dietary protein and blood pressure : epidemiological studies

    NARCIS (Netherlands)

    Altorf-van der Kuil, W.

    2012-01-01


    Background
    Elevated blood pressure is a major risk factor for cardiovascular diseases. Diet and lifestyle have a substantial impact on blood pressure, but the role of protein intake is not yet clear. This thesis focuses on total dietary protein, types of protein (i.e. plant and

  6. TINGKAT PENCAHAYAAN ALAMI PADA TATA LETAK INTERIOR AREA BACA PERPUSTAKAAN Studi Kasus : Ruang Layanan Referensi Perpustakaan DaerahProvinsi Jawa Tengah

    Directory of Open Access Journals (Sweden)

    Sutrati Melissa Malik

    2015-07-01

    Full Text Available pace and light are elements that need to be considered in an interior design library. Space Reference Service Central Java Provincial Library during opening hours turn on the lights as an additional light to illuminate the room, this was done because of the condition of the room to maximize the natural light into the room was minimal. This minimal conditions also influenced the layout of the furniture arrangement bookshelf is in the range of openings so that the incoming light is reduced. The purpose of this study was to measure and analyze Level Natural Lighting Interior Layout In Area Read Space Reference Service. The discussion and analysis in this study is quantitative descriptive. Method of Measuring the level of natural lighting in the room is done on a point of reference services Main Measure that is based on the position where the lamp. (Code TU, namely at point Measure Side opening window light in space and outer space, on each plan space services. (Code TUD and TUL and the Supplementary Measure point in the field of reading the reading table in each room service. (Code TUB. Measuring point is taken at a flat field which is located at the height of 0.75 m or 75 cm above the floor. This flat surface called the working field (Frick, 2008 The results of this study the intensity level of natural light in the space can be further enhanced by optimizing the openings on several sides of the building are not obstructed, Placement Area Read in the reference services optimized by the arrangement of the furniture layout in order to light who entered the area can read more leverage and a standardized 225 lux, furniture layout pattern of structuring a strong influence on a bright light into the space and visual comfort of the space. Results of measurement are mostly located below the minimum threshold standards library reading area that is 225 lux occurs because perletakkan furniture is placed on the side of the light source..

  7. Revisiting the description of Protein-Protein interfaces. Part II: Experimental study

    OpenAIRE

    Cazals , Frédéric; Proust , Flavien

    2006-01-01

    This paper provides a detailed experimental study of an interface model developed in the companion article F. Cazals and F. Proust, Revisiting the description of Protein-Protein interfaces. Part I: algorithms. Our experimental study is concerned with the usual database of protein-protein complexes, split into five families (Proteases, Immune system, Enzyme Complexes, Signal transduction, Misc.) Our findings, which bear some contradictions with usual statements are the following: (i)Connectivi...

  8. A case study of interior low-frequency noise from box-shaped bridge girders induced by running trains: Its mechanism, prediction and countermeasures

    Science.gov (United States)

    Zhang, Xun; Li, Xiaozhen; Hao, Hong; Wang, Dangxiong; Li, Yadong

    2016-04-01

    A side effect of high-speed railway and urban rail transit systems is the associated vibration and noise. Since the use of concrete viaducts is predominant in railway construction due to scarce land resources, low-frequency (20-200 Hz) structure-radiated noise from concrete bridges is a principal concern. Although it is the most commonly used bridge type, the mechanism of noise emission from box-shaped bridge girders when subjected to impact forces from moving trains, which sounds like beating a drum, has not been well studied. In this study, a field measurement was first made on a simply-supported box-shaped bridge to record the acceleration of the slabs and the associated sound pressures induced by running trains. These data indicated that a significant beat-wave noise occurred in the box-shaped cavity when the train speed was around 340 km/h, which arose from the interference between two sound waves of 75.0 Hz and 78.8 Hz. The noise leakage from the bridge expansion joint was serious and resulted in obvious noise pollution near the bridge once the beat-wave noise was generated in the cavity. The dominant frequency of the interior noise at 75.0 Hz was confirmed from the spectrum of the data and the modal analysis results, and originated from the peak vibration of the top slab due to resonance and the first-order vertical acoustic mode, which led to cavity resonance, amplifying the corresponding noise. The three-dimensional acoustic modes and local vibration modes of the slab were calculated by using the finite element method. A simplified vehicle-track-bridge coupling vibration model was then developed to calculate the wheel-rail interaction force in a frequency range of 20-200 Hz. Numerical simulations using the boundary element method confirmed the cavity resonance effect and the numerical results agreed well with the data. Based on the calibrated numerical model, three noise reduction measures, i.e., adding a horizontal baffle in the interior cavity, narrowing

  9. Interior design conceptual basis

    CERN Document Server

    Sully, Anthony

    2015-01-01

    Maximizing reader insights into interior design as a conceptual way of thinking, which is about ideas and how they are formulated. The major themes of this book are the seven concepts of planning, circulation, 3D, construction, materials, colour and lighting, which covers the entire spectrum of a designer’s activity. Analysing design concepts from the view of the range of possibilities that the designer can examine and eventually decide by choice and conclusive belief the appropriate course of action to take in forming that particular concept, the formation and implementation of these concepts is taken in this book to aid the designer in his/her professional task of completing a design proposal to the client. The purpose of this book is to prepare designers to focus on each concept independently as much as possible, whilst acknowledging relative connections without unwarranted influences unfairly dictating a conceptual bias, and is about that part of the design process called conceptual analysis. It is assu...

  10. Integration process of theoretical courses with design studios in undergraduate education: Case studies of architecture and interior design studios

    Directory of Open Access Journals (Sweden)

    Ozmehmet Ecehan

    2016-01-01

    Full Text Available The formulations of studios are the most critical problem of design studies, because the foundation of further architectural education is based on these design studios. This paper focuses on discussions of studiobased design learning systems and curriculum developments on integral design studios that aims significant and innovative frameworks. In this context, integrated design studios are the newest approaches of architectural education. In this education system every studio has its own integral course. Integral courses give support to the design studios. This support can be either theoretical or practical. Knowledge that is related with the context of the design studio can be explained in this integrated course in some cases, in some cases as simulation program can be explained in some parts of the course. The support of the integral courses to the studios must be evaluated deeply. This paper presents the positive parts and negative parts of the new integral studio approach in this context. By this way, strong and weak parts of this education system is put forward.

  11. Summary of 2012 reconnaissance field studies related to the petroleum geology of the Nenana Basin, interior Alaska

    Science.gov (United States)

    Wartes, Marwan A.; Gillis, Robert J.; Herriott, Trystan M.; Stanley, Richard G.; Helmold, Kenneth P.; Peterson, C. Shaun; Benowitz, Jeffrey A.

    2013-01-01

    The Alaska Division of Geological & Geophysical Surveys (DGGS) recently initiated a multi-year review of the hydrocarbon potential of frontier sedimentary basins in Alaska (Swenson and others, 2012). In collaboration with the Alaska Division of Oil & Gas and the U.S. Geological Survey we conducted reconnaissance field studies in two basins with recognized natural gas potential—the Susitna basin and the Nenana basin (LePain and others, 2012). This paper summarizes our initial work on the Nenana basin; a brief summary of our work in the Susitna basin can be found in Gillis and others (in press). During early May 2012, we conducted ten days of helicopter-supported fieldwork and reconnaissance sampling along the northern Alaska Range foothills and Yukon–Tanana upland near Fairbanks (fig. 1). The goal of this work was to improve our understanding of the geologic development of the Nenana basin and to collect a suite of samples to better evaluate hydrocarbon potential. Most laboratory analyses have not yet been completed, so this preliminary report serves as a summary of field data and sets the framework for future, more comprehensive analysis to be presented in later publications.

  12. Hazard-evaluation and technical-assistance report No. TA-76-54, Department of the Interior, National Park Service: Cave study

    International Nuclear Information System (INIS)

    Gunter, E.P.; Meyer, C.R.

    1978-05-01

    In response to a request from the Department of the Interior, a medical evaluation was made of employees working in eight caves in the National Park System. Concern was directed at possible radon-daughter radiation exposures. Cave employees were given a questionnaire requesting past occupational exposure as well as past pulmonary history and tobacco consumption. Only a few of 35 comparisons within NIOSH had any consistent abnormality of significance. No widespread pulmonary cytological abnormalities were found in the cohort. The authors conclude that there is no apparent respiratory effect at the time. They recommend routine monitoring of cave employees older than 40 to 45 years of age who are cigarette smokers and who have worked in caves for more than 5 years. Those over 45 years of age and employed in caves for 5 years or more should receive high priority for monitoring regardless of smoking status. The authors recommend that all employees be encouraged to stop smoking, that a general preemployment physical be given including baseline sputum cytology and chest x-ray studies, that a yearly examination be given with laboratory studies on the aforementioned high risk individuals, and that cave air should not be used for air conditioning

  13. A Comparative Study of Applying Active-Set and Interior Point Methods in MPC for Controlling Nonlinear pH Process

    Directory of Open Access Journals (Sweden)

    Syam Syafiie

    2014-06-01

    Full Text Available A comparative study of Model Predictive Control (MPC using active-set method and interior point methods is proposed as a control technique for highly non-linear pH process. The process is a strong acid-strong base system. A strong acid of hydrochloric acid (HCl and a strong base of sodium hydroxide (NaOH with the presence of buffer solution sodium bicarbonate (NaHCO3 are used in a neutralization process flowing into reactor. The non-linear pH neutralization model governed in this process is presented by multi-linear models. Performance of both controllers is studied by evaluating its ability of set-point tracking and disturbance-rejection. Besides, the optimization time is compared between these two methods; both MPC shows the similar performance with no overshoot, offset, and oscillation. However, the conventional active-set method gives a shorter control action time for small scale optimization problem compared to MPC using IPM method for pH control.

  14. Visioning for secondary palliative care service hubs in rural communities: a qualitative case study from British Columbia's interior

    Directory of Open Access Journals (Sweden)

    Hanlon Neil

    2009-10-01

    Full Text Available Abstract Background As the populations of many developed nations continue to age at rapid rates it is becoming increasingly important to enhance palliative care service delivery in order to meet anticipated demand. Rural areas face a number of challenges in doing this, and thus dedicated attention must be given to determining how to best enhance service delivery in ways that are sensitive to their particular needs. The purposes of this article are to determine the vision for establishing secondary palliative care service hubs (SPCH in rural communities through undertaking a case study, and to ascertain the criteria that need to be considered when siting such hubs. Methods A rural region of British Columbia, Canada was selected for primary data collection, which took place over a five-month period in 2008. Formal and informal palliative care providers (n = 31 were interviewed. A purposeful recruitment strategy was used to maximize occupational and practice diversity. Interviews were conducted by phone using a semi-structured guide. Interviews were audio recorded and transcribed verbatim. Data were managed using NVivo8™ software and analyzed thematically, using investigator triangulation to strengthen interpretation. Results Four themes emerged from the dataset: (1 main SPCH features; (2 determining a location; (3 value-added outcomes; and (4 key considerations. It was found that participants generally supported implementing a SPCH in the rural region of focus. Several consistent messages emerged, including that: (1 SPCHs must create opportunities for two-way information exchange between specialists and generalists and communities; (2 SPCHs should diffuse information and ideas throughout the region, thus serving as a locus for education and a means of enhancing training opportunities; and (3 hubs need not be physical sites in the community (e.g., an office in a hospice or hospital, but may be virtual or take other forms based upon local needs

  15. Springtime Flood Risk Reduction in Rural Arctic: A Comparative Study of Interior Alaska, United States and Central Yakutia, Russia

    Directory of Open Access Journals (Sweden)

    Yekaterina Y. Kontar

    2018-03-01

    Full Text Available Every spring, riverine communities throughout the Arctic face flood risk. As the river ice begins to thaw and break up, ice jams—accumulation of chunks and sheets of ice in the river channel, force melt water and ice floes to back up for dozens of kilometers and flood vulnerable communities upstream. Via a comparative analysis between two flood-prone communities in Alaska and Yakutia (Siberia, this study examines key components of flood risk—hazards, exposure, and vulnerability, and existing practices in flood risk reduction in rural Arctic. The research sites are two rural communities—Galena (Yukon River and Edeytsy (Lena River, which sustained major ice-jam floods in May 2013. The data was acquired through a combination of direct observations on site, review of documents and archives, focus group discussions, and surveys. Five focus groups with US and Russian representatives from disaster management agencies revealed a few similar patterns as well as significant differences in flood risk reduction strategies. The main differences included higher reliance on mechanical and short-term ice jam and flood mitigation efforts (e.g., ice-jam demolition in the Russian Arctic, and lack of a centralized flood management model in the US. Surveys conducted among population at risk during the site visits to Edeytsy (November 2015 and Galena (March 2016 revealed higher satisfaction levels with the existing flood risk reduction efforts among Edeytsy residents. Survey respondents in Galena indicated the lack of ice jam removal and other flood prevention measures as the key drawback in the existing flood management. Historical analysis, conducted via the disaster Pressure and Release (PAR model, revealed that springtime flood risk in both regions results from complex interactions among a series of natural processes that generate conditions of hazard, and human actions that generate conditions of communities’ exposure and vulnerability. The analysis

  16. Aqueous poly(amidoamine) dendrimer G3 and G4 generations with several interior cores at pHs 5 and 7: a molecular dynamics simulation study.

    Science.gov (United States)

    Kavyani, Sajjad; Amjad-Iranagh, Sepideh; Modarress, Hamid

    2014-03-27

    Poly(amidoamine) (PAMAM) dendrimers play an important role in drug delivery systems, because the dendrimers are susceptible to gain unique features with modification of their structure such as changing their terminals or improving their interior core. To investigate the core improvement and the effect of core nature on PAMAM dendrimers, we studied two generations G3 and G4 PAMAM dendrimers with the interior cores of commonly used ethylendiamine (EDA), 1,5-diaminohexane (DAH), and bis(3-aminopropyl) ether (BAPE) solvated in water, as an aqueous dendrimer system, by using molecular dynamics simulation and applying a coarse-grained (CG) dendrimer force field. To consider the electrostatic interactions, the simulations were performed at two protonation states, pHs 5 and 7. The results indicated that the core improvement of PAMAM dendrimers with DAH produces the largest size for G3 and G4 dendrimers at both pHs 5 and 7. The increase in the size was also observed for BAPE core but it was not so significant as that for DAH core. By considering the internal structure of dendrimers, it was found that PAMAM dendrimer shell with DAH core had more cavities than with BAPE core at both pHs 5 and 7. Also the moment of inertia calculations showed that the generation G3 is more open-shaped and has higher structural asymmetry than the generation G4. Possessing these properties by G3, specially due to its structural asymmetry, make penetration of water beads into the dendrimer feasible. But for higher generation G4 with its relatively structural symmetry, the encapsulation efficiency for water molecules can be enhanced by changing its core to DAH or BAPE. It is also observed that for the higher generation G4 the effect of core modification is more profound than G3 because the core modification promotes the structural asymmetry development of G4 more significantly. Comparing the number of water beads that penetrate into the PAMAM dendrimers for EDA, DAH, and BAPE cores indicates a

  17. Designing fire safe interiors.

    Science.gov (United States)

    Belles, D W

    1992-01-01

    Any product that causes a fire to grow large is deficient in fire safety performance. A large fire in any building represents a serious hazard. Multiple-death fires almost always are linked to fires that grow quickly to a large size. Interior finishes have large, continuous surfaces over which fire can spread. They are regulated to slow initial fire growth, and must be qualified for use on the basis of fire tests. To obtain meaningful results, specimens must be representative of actual installation. Variables--such as the substrate, the adhesive, and product thickness and density--can affect product performance. The tunnel test may not adequately evaluate some products, such as foam plastics or textile wall coverings, thermoplastic materials, or materials of minimal mass. Where questions exist, products should be evaluated on a full-scale basis. Curtains and draperies are examples of products that ignite easily and spread flames readily. The present method for testing curtains and draperies evaluates one fabric at a time. Although a fabric tested alone may perform well, fabrics that meet test standards individually sometimes perform poorly when tested in combination. Contents and furnishings constitute the major fuels in many fires. Contents may involve paper products and other lightweight materials that are easily ignited and capable of fast fire growth. Similarly, a small source may ignite many items of furniture that are capable of sustained fire growth. Upholstered furniture can reach peak burning rates in less than 5 minutes. Furnishings have been associated with many multiple-death fires.(ABSTRACT TRUNCATED AT 250 WORDS)

  18. Graviatoms with de Sitter Interior

    Directory of Open Access Journals (Sweden)

    Irina Dymnikova

    2013-01-01

    Full Text Available We present a graviatom with de Sitter interior as a new candidate to atomic dark matter generically related to a vacuum dark energy through its de Sitter vacuum interior. It is a gravitationally bound quantum system consisting of a nucleus represented by a regular primordial black hole (RPBH, its remnant or gravitational vacuum soliton G-lump, and a charged particle. We estimate probability of formation of RPBHs and G-lumps in the early Universe and evaluate energy spectrum and electromagnetic radiation of graviatom which can in principle bear information about a fundamental symmetry scale responsible for de Sitter interior and serve as its observational signatures.

  19. Interior Design Standards in the Secondary FCS Curriculum

    Science.gov (United States)

    Katz, Shana H.; Smith, Bettye P.

    2006-01-01

    This article deals with a study on interior design standards in the secondary FCS curriculum. This study assessed the importance FCS teachers placed on content standards in the interior design curriculum to help determine the amount of time and emphasis to place on the units within the courses. A cover letter and questionnaire were sent…

  20. Building of Requirement: Liberating Academic Interior Architecture

    Science.gov (United States)

    McLane, Yelena; Dawkins, Jim

    2014-01-01

    The authors focus on the strategies employed in the recent renovation of the William Johnston Building at Florida State University, in which the historical exterior was preserved, while the interiors were adapted to new functions as classrooms, study centers, and common spaces with intentionally undefined purposes. The building's various use…

  1. Potential for forest products in interior Alaska.

    Science.gov (United States)

    George R. Sampson; Willem W.S. van Hees; Theodore S. Setzer; Richard C. Smith

    1988-01-01

    Future opportunities for producing Alaska forest products were examined from the perspective of timber supply as reported in timber inventory reports and past studies of forest products industry potential. The best prospects for increasing industrial production of forest products in interior Alaska are for softwood lumber. Current softwood lumber production in the...

  2. Interior Pathways to Dissipation of Mesoscale Energy

    Energy Technology Data Exchange (ETDEWEB)

    Nadiga, Balasubramanya T. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2018-01-27

    This talk at Goethe University asks What Powers Overturning Circulation? How does Ocean Circulation Equilibrate? There is a HUGE reservoir of energy sitting in the interior ocean. Can fluid dynamic instabilities contribute to the mixing required to drive global overturning circulation? Study designed to eliminate distinguished horizontal surfaces such as bottom BL and surface layer

  3. Using RNA Interference to Study Protein Function

    OpenAIRE

    Curtis, Carol D.; Nardulli, Ann M.

    2009-01-01

    RNA interference can be extremely useful in determining the function of an endogenously-expressed protein in its normal cellular environment. In this chapter, we describe a method that uses small interfering RNA (siRNA) to knock down mRNA and protein expression in cultured cells so that the effect of a putative regulatory protein on gene expression can be delineated. Methods of assessing the effectiveness of the siRNA procedure using real time quantitative PCR and Western analysis are also in...

  4. Interior Alaska Bouguer Gravity Anomaly

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A 1 kilometer Complete Bouguer Anomaly gravity grid of interior Alaska. All grid cells within the rectangular data area (from 61 to 66 degrees North latitude and...

  5. Interior Alaska Bouguer Gravity Anomaly

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A 1 kilometer Complete Bouguer Anomaly gravity grid of interior Alaska. Only those grid cells within 10 kilometers of a gravity data point have gravity values....

  6. Comparative Study of Elastic Network Model and Protein Contact Network for Protein Complexes: The Hemoglobin Case

    Directory of Open Access Journals (Sweden)

    Guang Hu

    2017-01-01

    Full Text Available The overall topology and interfacial interactions play key roles in understanding structural and functional principles of protein complexes. Elastic Network Model (ENM and Protein Contact Network (PCN are two widely used methods for high throughput investigation of structures and interactions within protein complexes. In this work, the comparative analysis of ENM and PCN relative to hemoglobin (Hb was taken as case study. We examine four types of structural and dynamical paradigms, namely, conformational change between different states of Hbs, modular analysis, allosteric mechanisms studies, and interface characterization of an Hb. The comparative study shows that ENM has an advantage in studying dynamical properties and protein-protein interfaces, while PCN is better for describing protein structures quantitatively both from local and from global levels. We suggest that the integration of ENM and PCN would give a potential but powerful tool in structural systems biology.

  7. The cell-based L-glutathione protection assays to study endocytosis and recycling of plasma membrane proteins.

    Science.gov (United States)

    Cihil, Kristine M; Swiatecka-Urban, Agnieszka

    2013-12-13

    Membrane trafficking involves transport of proteins from the plasma membrane to the cell interior (i.e. endocytosis) followed by trafficking to lysosomes for degradation or to the plasma membrane for recycling. The cell based L-glutathione protection assays can be used to study endocytosis and recycling of protein receptors, channels, transporters, and adhesion molecules localized at the cell surface. The endocytic assay requires labeling of cell surface proteins with a cell membrane impermeable biotin containing a disulfide bond and the N-hydroxysuccinimide (NHS) ester at 4 ºC - a temperature at which membrane trafficking does not occur. Endocytosis of biotinylated plasma membrane proteins is induced by incubation at 37 ºC. Next, the temperature is decreased again to 4 ºC to stop endocytic trafficking and the disulfide bond in biotin covalently attached to proteins that have remained at the plasma membrane is reduced with L-glutathione. At this point, only proteins that were endocytosed remain protected from L-glutathione and thus remain biotinylated. After cell lysis, biotinylated proteins are isolated with streptavidin agarose, eluted from agarose, and the biotinylated protein of interest is detected by western blotting. During the recycling assay, after biotinylation cells are incubated at 37 °C to load endocytic vesicles with biotinylated proteins and the disulfide bond in biotin covalently attached to proteins remaining at the plasma membrane is reduced with L-glutathione at 4 ºC as in the endocytic assay. Next, cells are incubated again at 37 °C to allow biotinylated proteins from endocytic vesicles to recycle to the plasma membrane. Cells are then incubated at 4 ºC, and the disulfide bond in biotin attached to proteins that recycled to the plasma membranes is reduced with L-glutathione. The biotinylated proteins protected from L-glutathione are those that did not recycle to the plasma membrane.

  8. Studies of Protein Solution Properties Using Osmotic Pressure Measurements

    Science.gov (United States)

    Agena, S.; Bogle, David; Pusey, Marc; Agena, S.

    1998-01-01

    Examination of the protein crystallization process involves investigation of the liquid and solid state and a protein's properties in these states. Liquid state studies such as protein self association in solution by light scattering methods or other methods have been used to examine a protein Is properties and therefore its crystallization process and conditions. Likewise can osmotic pressure data be used to examine protein properties and various published osmotic pressure studies were examined by us to correlate osmotic pressure to protein solution properties. The solution behavior of serum albumin, alpha - chymotrypsin, beta - lactoglobulin and ovalbumin was examined over a range of temperatures, pH values and different salt types and concentrations. Using virial expansion and a local composition model the non ideal solution behavior in form of the activity coefficients (thermodynamic) was described for the systems. This protein activity coefficient data was related to a protein's solubility behavior and this process and the results will be presented.

  9. Communication in ecosystem management: a case study of cross-disciplinary integration in the assessment phase of the interior Columbia Basin Ecosystem Management Project.

    Science.gov (United States)

    Jakobsen, Christine Haugaard; McLaughlin, William J

    2004-05-01

    Effective communication is essential to the success of collaborative ecosystem management projects. In this paper, we investigated the dynamics of the Interior Columbia Basin Ecosystem Management Project's (ICBEMP) cross-disciplinary integration process in the assessment phase. Using a case study research design, we captured the rich trail of experience through conducting in-depth interviews and collecting information from internal and public documents, videos, and meetings related to the ICBEMP. Coding and analysis was facilitated by a qualitative analysis software, NVivo. Results include the range of internal perspectives on barriers and facilitators of cross-disciplinary integration in the Science Integration Team (SIT). These are arrayed in terms of discipline-based differences, organizational structures and activities, individual traits of scientists, and previous working relationships. The ICBEMP organization included a team of communication staffs (CT), and the data described the CT as a mixed group in terms of qualifications and educational backgrounds that played a major role in communication with actors external to the ICBEMP organization but a minor one in terms of internal communication. The data indicated that the CT-SIT communication was influenced by characteristics of actors and structures related to organizations and their cultures. We conclude that the ICBEMP members may not have had a sufficient level of shared understanding of central domains, such as the task at hand and ways and timing of information sharing. The paper concludes by suggesting that future ecosystem management assessment teams use qualified communications specialists to design and monitor the development of shared cognition among organization members in order to improve the effectiveness of communication and cross-disciplinary integration.

  10. A SIMPLE FLUORESCENT LABELING METHOD FOR STUDIES OF PROTEIN OXIDATION, PROTEIN MODIFICATION, AND PROTEOLYSIS

    Science.gov (United States)

    Pickering, Andrew. M.; Davies, Kelvin. J. A.

    2014-01-01

    Proteins are sensitive to oxidation, and oxidized proteins are excellent substrates for degradation by proteolytic enzymes such as the Proteasome and the mitochondrial Lon protease. Protein labeling is required for studies of protein turnover. Unfortunately, most labeling techniques involve 3H or 14C methylation which is expensive, exposes researchers to radioactivity, generates large amounts of radioactive waste, and allows only single-point assays because samples require acid-precipitation. Alternative labeling methods, have largely proven unsuitable, either because the probe itself is modified by the oxidant(s) being studied, or because the alternative labeling techniques are too complex or too costly for routine use. What is needed is a simple, quick, and cheap labeling technique that uses a non-radioactive marker, that binds strongly to proteins, is resistant to oxidative modification, and emits a strong signal. We have devised a new reductive method for labeling free carboxyl groups of proteins with the small fluorophore 7-amino-4-methycoumarin (AMC). When bound to target proteins, AMC fluoresces very weakly but when AMC is released by proteinases, proteases, or peptidases, it fluoresces strongly. Thus, without acid-precipitation, the proteolysis of any target protein can be studied continuously, in multiwell plates. In direct comparisons, 3H-labeled proteins and AMC-labeled proteins exhibited essentially identical degradation patterns during incubation with trypsin, cell extracts, and purified proteasome. AMC-labeled proteins are well-suited to study increased proteolytic susceptibility following protein modification, since the AMC-protein bond is resistant to oxidizing agents such as hydrogen peroxide and peroxynitrite, and is stable over time and to extremes of pH, temperature (even boiling), freeze-thawing, mercaptoethanol, and methanol. PMID:21988844

  11. The interiors of the giant planets - 1983

    International Nuclear Information System (INIS)

    Smoluchowski, R.

    1983-01-01

    The last few years brought progress in understanding the interiors of the giant planets especially of the two larger ones which have been visited by Pioneer and Voyager spacecraft. An analysis of the formation of the giant planets also helped to clarify certain important common features. The presently available model of Jupiter is still based on certain somewhat bothersome approximations but it appears to satisfy the main observational constraints. Saturn's interior is much better understood than it was previously although the quantitative aspects of the role of the miscibility gap in the hydrogen-helium system have not yet been entirely resolved. Much attention has been directed at the interiors of Uranus and Neptune and the outstanding question appears to be the location and the amount of ices and methane present in their outer layers. Both the two- and the three-layer models are moderately successful. Serious difficulties arise from the considerable uncertainties concerning the rotational periods of both planets. Also the estimates of the internal heat fluxes and of the magnetic fields of both planets are not sufficiently certain. It is hoped that the forthcoming flyby of these two planets by a Voyager spacecraft will provide important new data for a future study of their interiors. (Auth.)

  12. SAS-Based Studies of Protein Fibrillation

    DEFF Research Database (Denmark)

    Marasini, Carlotta; Vestergaard, Bente

    2017-01-01

    Protein fibrillation is associated with a number of fatal amyloid diseases (e.g. Alzheimer's and Parkinson's diseases). From a structural point of view, the aggregation process starts from an ensemble of native states that convert into transiently formed oligomers, higher order assemblies and pro...... and highlight existing reports, exemplifying the wealth of information that can be derived from the method....

  13. Interior Design Factors in Library Facilities.

    Science.gov (United States)

    Jackson, Patricia Ann

    When planning the interior of a library facility, the planning team of librarian, library consultant, architect, and interior design consultant must focus attention on the basic principles of interior design and the psychological needs of the user. Colors for an interior should be selected with careful regard to space, light, and emotional and…

  14. VARIATIONAL PRINCIPLE FOR PLANETARY INTERIORS

    International Nuclear Information System (INIS)

    Zeng, Li; Jacobsen, Stein B.

    2016-01-01

    In the past few years, the number of confirmed planets has grown above 2000. It is clear that they represent a diversity of structures not seen in our own solar system. In addition to very detailed interior modeling, it is valuable to have a simple analytical framework for describing planetary structures. The variational principle is a fundamental principle in physics, entailing that a physical system follows the trajectory, which minimizes its action. It is alternative to the differential equation formulation of a physical system. Applying the variational principle to the planetary interior can beautifully summarize the set of differential equations into one, which provides us some insight into the problem. From this principle, a universal mass–radius relation, an estimate of the error propagation from the equation of state to the mass–radius relation, and a form of the virial theorem applicable to planetary interiors are derived.

  15. Functional textiles in hospital interiors

    DEFF Research Database (Denmark)

    Mogensen, Jeppe

    This PhD thesis explores the possibilities and design qualities of using functional textiles in the interior of hospital environments, and is the result of a three years collaboration between Aalborg University, Department of Civil Engineering, and VIA University College, VIA Design. The project...... that the physical environments affect the patients’ level of stress and influence their process of recovery and healing. However, although research in this field of hospital design has increased substantially in recent years, knowledge on the use of new materials and textiles in hospital interiors is still rather...... limited. Concerned with the design potentials of using textiles in hospital interiors, the purpose of the PhD project has been to explore the possibilities and design qualities of using these materials in hospital design. Relating to both technical and aesthetic aspects of using functional textiles...

  16. Contemporary NMR Studies of Protein Electrostatics.

    Science.gov (United States)

    Hass, Mathias A S; Mulder, Frans A A

    2015-01-01

    Electrostatics play an important role in many aspects of protein chemistry. However, the accurate determination of side chain proton affinity in proteins by experiment and theory remains challenging. In recent years the field of nuclear magnetic resonance spectroscopy has advanced the way that protonation states are measured, allowing researchers to examine electrostatic interactions at an unprecedented level of detail and accuracy. Experiments are now in place that follow pH-dependent (13)C and (15)N chemical shifts as spatially close as possible to the sites of protonation, allowing all titratable amino acid side chains to be probed sequence specifically. The strong and telling response of carefully selected reporter nuclei allows individual titration events to be monitored. At the same time, improved frameworks allow researchers to model multiple coupled protonation equilibria and to identify the underlying pH-dependent contributions to the chemical shifts.

  17. Interior design for passive solar homes

    Energy Technology Data Exchange (ETDEWEB)

    Breen, J. C.

    1981-07-01

    The increasing emphasis on refinement of passive solar systems has brought recognition to interior design as an integral part of passive solar architecture. Interior design can be used as a finetuning tool minimizing many of the problems associated with passive solar energy use in residential buildings. In addition, treatment of interior space in solar model homes may be a prime factor in determining sales success. A new style of interior design is evolving in response to changes in building form incorporating passive solar design features. The psychology behind passive solar architecture is reflected in interiors, and selection of interior components increasingly depends on the functional suitability of various interior elements.

  18. Interior design for passive solar homes

    Science.gov (United States)

    Breen, J. C.

    1981-07-01

    The increasing emphasis on refinement of passive solar systems brought recognition to interior design as an integral part of passive solar architecture. Interior design can be used as a finetuning tool minimizing many of the problems associated with passive solar energy use in residential buildings. In addition, treatment of interior space in solar model homes may be a prime factor in determining sales success. A new style of interior design is evolving in response to changes in building from incorporating passive solar design features. The psychology behind passive solar architecture is reflected in interiors, and selection of interior components increasingly depends on the functional suitably of various interior elements.

  19. Dewatering tailings impoundments : interior drains

    International Nuclear Information System (INIS)

    Charlie, W.A.; Doehring, D.O.; Durnford, D.S.

    1984-01-01

    For the design of a new uranium tailings impoundment in the western United States, it was proposed that an interior drainage system be considered to economically and reliably minimize potential short- and long-term environmental impacts. The objectives were to decrease the effective hydraulic head on the clay liner, to dewater and stabilize the tailings, and to increase the amount of water recycled to the mill. In addition, desaturation of the impoundment would induce capillary pressure (negative porewater pressure), further reducing the potential movement of dissolved pollutants. This paper presents saturated and unsaturated seepage principles and reviews the concept, criteria and design of the various interior drainage systems considered

  20. High-resolution nuclear magnetic resonance studies of proteins.

    Science.gov (United States)

    Jonas, Jiri

    2002-03-25

    The combination of advanced high-resolution nuclear magnetic resonance (NMR) techniques with high-pressure capability represents a powerful experimental tool in studies of protein folding. This review is organized as follows: after a general introduction of high-pressure, high-resolution NMR spectroscopy of proteins, the experimental part deals with instrumentation. The main section of the review is devoted to NMR studies of reversible pressure unfolding of proteins with special emphasis on pressure-assisted cold denaturation and the detection of folding intermediates. Recent studies investigating local perturbations in proteins and the experiments following the effects of point mutations on pressure stability of proteins are also discussed. Ribonuclease A, lysozyme, ubiquitin, apomyoglobin, alpha-lactalbumin and troponin C were the model proteins investigated.

  1. Lake Habitat and Fish Surveys on Interior Alaska National Wildlife Refuges, 1984–1986

    Data.gov (United States)

    Department of the Interior — A large-scale lake study on Interior Alaska National Wildlife Refuges (NWR) was undertaken from 1984–1986. Six NWRs were surveyed (Innoko, Kanuti, Koyukuk, Nowitna,...

  2. Can microbes compete with cows for sustainable protein production - A feasibility study on high quality protein

    DEFF Research Database (Denmark)

    Vestergaard, Mike; Chan, Siu Hung Joshua; Jensen, Peter Ruhdal

    2016-01-01

    An increasing population and their increased demand for high-protein diets will require dramatic changes in the food industry, as limited resources and environmental issues will make animal derived foods and proteins, gradually more unsustainable to produce. To explore alternatives to animal...... derived proteins, an economic model was built around the genome-scale metabolic network of E. coli to study the feasibility of recombinant protein production as a food source. Using a novel model, we predicted which microbial production strategies are optimal for economic return, by capturing the tradeoff...... between the market prices of substrates, product output and the efficiency of microbial production. A case study with the food protein, Bovine Alpha Lactalbumin was made to evaluate the upstream economic feasibilities. Simulations with different substrate profiles at maximum productivity were used...

  3. Immunoelectrophoretic study of the effect of radiation on protein mixtures

    International Nuclear Information System (INIS)

    Maffei, J.; Soszynski, M.; Bog-Hansen, T.C.

    1983-01-01

    This paper demonstrates the suitability of immunoelectrophoretic methods in studies of radiation effects on protein mixtures. Single serum proteins (IgG, albumin, transferrin), albumin-transferrin mixtures and human serum were irradiated with doses of 3-52 kGy. The irradiated proteins were analysed using rocket-, crossed-, crossed-with-intermediate-gel, and fused-rocket immunoelectrophoretic methods. Using crossed immunoelectrophoresis with intermediate gel, complex formation between albumin and transferrin was observed. Gel filtration monitored by fused-rocket immunoelectrophoresis was demonstrated to be a most promising method for studying protein degradation and hybrid formation. (author)

  4. Process design (exterior – interior design)

    OpenAIRE

    Sandeva, Vaska; Despot, Katerina

    2013-01-01

    The design is a complex process of spatial organization and creative problem object. It switched to the study of complex natural conditions (analysis and evaluation) and the development of compositional solution structure of the object. Construction and shaping of all buildings whether it is exterior or interior, be it street, Square apartment building, park or greater forest massif, public facility (administrative buildings, hospitals, schools, galleries etc.), residential object (garsion...

  5. Force spectroscopy studies on protein-ligand interactions: a single protein mechanics perspective.

    Science.gov (United States)

    Hu, Xiaotang; Li, Hongbin

    2014-10-01

    Protein-ligand interactions are ubiquitous and play important roles in almost every biological process. The direct elucidation of the thermodynamic, structural and functional consequences of protein-ligand interactions is thus of critical importance to decipher the mechanism underlying these biological processes. A toolbox containing a variety of powerful techniques has been developed to quantitatively study protein-ligand interactions in vitro as well as in living systems. The development of atomic force microscopy-based single molecule force spectroscopy techniques has expanded this toolbox and made it possible to directly probe the mechanical consequence of ligand binding on proteins. Many recent experiments have revealed how ligand binding affects the mechanical stability and mechanical unfolding dynamics of proteins, and provided mechanistic understanding on these effects. The enhancement effect of mechanical stability by ligand binding has been used to help tune the mechanical stability of proteins in a rational manner and develop novel functional binding assays for protein-ligand interactions. Single molecule force spectroscopy studies have started to shed new lights on the structural and functional consequence of ligand binding on proteins that bear force under their biological settings. Copyright © 2014 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.

  6. Membrane Protein Production in Lactococcus lactis for Functional Studies.

    Science.gov (United States)

    Seigneurin-Berny, Daphne; King, Martin S; Sautron, Emiline; Moyet, Lucas; Catty, Patrice; André, François; Rolland, Norbert; Kunji, Edmund R S; Frelet-Barrand, Annie

    2016-01-01

    Due to their unique properties, expression and study of membrane proteins in heterologous systems remains difficult. Among the bacterial systems available, the Gram-positive lactic bacterium, Lactococcus lactis, traditionally used in food fermentations, is nowadays widely used for large-scale production and functional characterization of bacterial and eukaryotic membrane proteins. The aim of this chapter is to describe the different possibilities for the functional characterization of peripheral or intrinsic membrane proteins expressed in Lactococcus lactis.

  7. Crash simulations for interior design

    NARCIS (Netherlands)

    Poeze, E.; Slaats, P.M.A.

    1996-01-01

    With the increasing number of compact cars, safety aspects becomes increasingly important for interior designs. The smaller dimensions of these cars do not only decrease the car mass, but also the energy absorption length, resulting in a more severe crash pulse. As a consequence, the inertia loading

  8. Interior Design Trends in Libraries.

    Science.gov (United States)

    Sager, Don, Ed.

    2000-01-01

    Four contributing authors discuss perspectives on current trends in library interior design. Articles include: "Trends in Library Furnishings: A Manufacturer's Perspective" (Andrea Johnson); "Libraries, Architecture, and Light: The Architect's Perspective" (Rick McCarthy); "The Library Administrator's Perspective" (Chadwick Raymond); and "The…

  9. Interior Design: Teacher's Instructional Guide.

    Science.gov (United States)

    Hays, Tricia

    This teacher's instructional guide, which is part of a family and consumer sciences education series focusing on a broad range of employment opportunities, is intended to assist teachers responsible for teaching one- and two-year interior design programs for Texas high school students. The following are among the items included: (1) introductory…

  10. Neutron scattering studies on protein dynamics using the human myelin peripheral membrane protein P2

    Directory of Open Access Journals (Sweden)

    Laulumaa Saara

    2015-01-01

    Full Text Available Myelin is a multilayered proteolipid membrane structure surrounding selected axons in the vertebrate nervous system, which allows the rapid saltatory conduction of nerve impulses. Deficits in myelin formation and maintenance may lead to chronic neurological disease. P2 is an abundant myelin protein from peripheral nerves, binding between two apposing lipid bilayers. We studied the dynamics of the human myelin protein P2 and its mutated P38G variant in hydrated powders using elastic incoherent neutron scattering. The local harmonic vibrations at low temperatures were very similar for both samples, but the mutant protein had increased flexibility and softness close to physiological temperatures. The results indicate that a drastic mutation of proline to glycine at a functional site can affect protein dynamics, and in the case of P2, they may explain functional differences between the two proteins.

  11. Neutron scattering studies on protein dynamics using the human myelin peripheral membrane protein P2

    Science.gov (United States)

    Laulumaa, Saara; Kursula, Petri; Natali, Francesca

    2015-01-01

    Myelin is a multilayered proteolipid membrane structure surrounding selected axons in the vertebrate nervous system, which allows the rapid saltatory conduction of nerve impulses. Deficits in myelin formation and maintenance may lead to chronic neurological disease. P2 is an abundant myelin protein from peripheral nerves, binding between two apposing lipid bilayers. We studied the dynamics of the human myelin protein P2 and its mutated P38G variant in hydrated powders using elastic incoherent neutron scattering. The local harmonic vibrations at low temperatures were very similar for both samples, but the mutant protein had increased flexibility and softness close to physiological temperatures. The results indicate that a drastic mutation of proline to glycine at a functional site can affect protein dynamics, and in the case of P2, they may explain functional differences between the two proteins.

  12. Elemen Pembentuk Makna pada Sebuah Interior Arsitektur

    Directory of Open Access Journals (Sweden)

    Dila Hendrassukma

    2012-10-01

    Full Text Available Along with the increasing needs of the community, also increasing the need for space to accommodated those needs. With limited space available nowadays, it is not uncommon to change the old buildings’ function as a place to meet the social growing need of the space. However, it is must be remembered by architects and interior architects when changing the functions of a space that the old space has its own histories and particular meaning to people who had ever occupied it. Those histories and meanings should be included in the creation of the new function. Article gives and describes elements that need to be known in order to understand the sense of a space, such as drawing plans, scale, proportion, movement, transition and access that embodied in the architecture and interior space. Qualitative methods by literature study is used in the making of this article.. 

  13. Electromagnetic sounding of the Earth's interior

    CERN Document Server

    Spichak, Viacheslav V

    2015-01-01

    Electromagnetic Sounding of the Earth's Interior 2nd edition provides a comprehensive up-to-date collection of contributions, covering methodological, computational and practical aspects of Electromagnetic sounding of the Earth by different techniques at global, regional and local scales. Moreover, it contains new developments such as the concept of self-consistent tasks of geophysics and , 3-D interpretation of the TEM sounding which, so far, have not all been covered by one book. Electromagnetic Sounding of the Earth's Interior 2nd edition consists of three parts: I- EM sounding methods, II- Forward modelling and inversion techniques, and III - Data processing, analysis, modelling and interpretation. The new edition includes brand new chapters on Pulse and frequency electromagnetic sounding for hydrocarbon offshore exploration. Additionally all other chapters have been extensively updated to include new developments. Presents recently developed methodological findings of the earth's study, including seism...

  14. Protein folding and protein metallocluster studies using synchrotron small angler X-ray scattering

    International Nuclear Information System (INIS)

    Eliezer, D.

    1994-06-01

    Proteins, biological macromolecules composed of amino-acid building blocks, possess unique three dimensional shapes or conformations which are intimately related to their biological function. All of the information necessary to determine this conformation is stored in a protein's amino acid sequence. The problem of understanding the process by which nature maps protein amino-acid sequences to three-dimensional conformations is known as the protein folding problem, and is one of the central unsolved problems in biophysics today. The possible applications of a solution are broad, ranging from the elucidation of thousands of protein structures to the rational modification and design of protein-based drugs. The scattering of X-rays by matter has long been useful as a tool for the characterization of physical properties of materials, including biological samples. The high photon flux available at synchrotron X-ray sources allows for the measurement of scattering cross-sections of dilute and/or disordered samples. Such measurements do not yield the detailed geometrical information available from crystalline samples, but do allow for lower resolution studies of dynamical processes not observable in the crystalline state. The main focus of the work described here has been the study of the protein folding process using time-resolved small-angle x-ray scattering measurements. The original intention was to observe the decrease in overall size which must accompany the folding of a protein from an extended conformation to its compact native state. Although this process proved too fast for the current time-resolution of the technique, upper bounds were set on the probable compaction times of several small proteins. In addition, an interesting and unexpected process was detected, in which the folding protein passes through an intermediate state which shows a tendency to associate. This state is proposed to be a kinetic molten globule folding intermediate

  15. Vulnerabilidad y periferia interior

    Directory of Open Access Journals (Sweden)

    Paula Kápstein López

    2010-07-01

    This research is about the fragmentation of city centres in Chile. These areas are formed by internal limits that generate problems in relation to the process of urban growth without planning. Therefore, we tried to understand the process of obsolescence that generated segregated areas both physically and socially from the rest of the city. With this goal we defined a concept: the Inner Periphery. This is an original idea that refers to those degraded spaces situated in the urban centre of the city. These inner peripheries derive from the old peripheries that have been in place for decades. One of the objectives of this work is to determine how important was the absence of urban planning in the origin of these vulnerabilities. To do this we defined two methodologies. The first is the locating inner peripheries method and the other is the evaluation of these areas. Both methodologies are complementary and were applied to the study of two Chilean cities, Arica and Antofagasta, in order to generate recommendations for the improvement of the areas of urban decay. In this paper we will analyze one of these cities: Antofagasta. It is a good example of the signs that can be generated in urban territories by industrial activities. On the other hand, the localization and delimitation of the inner peripheries allowed us to assess the importance of the growth process in the origin of the urban decay.

  16. Studying Membrane Protein Structure and Function Using Nanodiscs

    DEFF Research Database (Denmark)

    Huda, Pie

    The structure and dynamic of membrane proteins can provide valuable information about general functions, diseases and effects of various drugs. Studying membrane proteins are a challenge as an amphiphilic environment is necessary to stabilise the protein in a functionally and structurally relevant...... form. This is most typically achieved through the use of detergent based reconstitution systems. However, time and again such systems fail to provide a suitable environment causing aggregation and inactivation. Nanodiscs are self-assembled lipoproteins containing two membrane scaffold proteins...... and a lipid bilayer in defined nanometer size, which can act as a stabiliser for membrane proteins. This enables both functional and structural investigation of membrane proteins in a detergent free environment which is closer to the native situation. Understanding the self-assembly of nanodiscs is important...

  17. Validation of protein carbonyl measurement: A multi-centre study

    Directory of Open Access Journals (Sweden)

    Edyta Augustyniak

    2015-04-01

    Full Text Available Protein carbonyls are widely analysed as a measure of protein oxidation. Several different methods exist for their determination. A previous study had described orders of magnitude variance that existed when protein carbonyls were analysed in a single laboratory by ELISA using different commercial kits. We have further explored the potential causes of variance in carbonyl analysis in a ring study. A soluble protein fraction was prepared from rat liver and exposed to 0, 5 and 15 min of UV irradiation. Lyophilised preparations were distributed to six different laboratories that routinely undertook protein carbonyl analysis across Europe. ELISA and Western blotting techniques detected an increase in protein carbonyl formation between 0 and 5 min of UV irradiation irrespective of method used. After irradiation for 15 min, less oxidation was detected by half of the laboratories than after 5 min irradiation. Three of the four ELISA carbonyl results fell within 95% confidence intervals. Likely errors in calculating absolute carbonyl values may be attributed to differences in standardisation. Out of up to 88 proteins identified as containing carbonyl groups after tryptic cleavage of irradiated and control liver proteins, only seven were common in all three liver preparations. Lysine and arginine residues modified by carbonyls are likely to be resistant to tryptic proteolysis. Use of a cocktail of proteases may increase the recovery of oxidised peptides. In conclusion, standardisation is critical for carbonyl analysis and heavily oxidised proteins may not be effectively analysed by any existing technique.

  18. Protein Engineering: Case Studies of Commercialized Engineered Products

    Science.gov (United States)

    Walsh, Gary

    2007-01-01

    Programs in biochemistry invariably encompass the principles of protein engineering. Students often display increased understanding and enthusiasm when theoretical concepts are underpinned by practical example. Herein are presented five case studies, each focusing upon a commercial protein product engineered to enhance its application-relevant…

  19. Fungal protein from corn waste effluents : a model study

    NARCIS (Netherlands)

    Schellart, J.A.

    1975-01-01

    The purpose of this investigation was to study the microbiological aspects of the production of microbial protein ('single cell protein'; SCP) from corn waste effluents with simultaneous reduction of the COD of these effluents.

    For practical reasons the corn waste water itself was

  20. Virtual Reality as Innovative Approach to the Interior Designing

    Science.gov (United States)

    Kaleja, Pavol; Kozlovská, Mária

    2017-06-01

    We can observe significant potential of information and communication technologies (ICT) in interior designing field, by development of software and hardware virtual reality tools. Using ICT tools offer realistic perception of proposal in its initial idea (the study). A group of real-time visualization, supported by hardware tools like Oculus Rift HTC Vive, provides free walkthrough and movement in virtual interior with the possibility of virtual designing. By improving of ICT software tools for designing in virtual reality we can achieve still more realistic virtual environment. The contribution presented proposal of an innovative approach of interior designing in virtual reality, using the latest software and hardware ICT virtual reality technologies

  1. Crane cabins' interior space multivariate anthropometric modeling.

    Science.gov (United States)

    Essdai, Ahmed; Spasojević Brkić, Vesna K; Golubović, Tamara; Brkić, Aleksandar; Popović, Vladimir

    2018-01-01

    Previous research has shown that today's crane cabins fail to meet the needs of a large proportion of operators. Performance and financial losses and effects on safety should not be overlooked as well. The first aim of this survey is to model the crane cabin interior space using up-to-date crane operator anthropometric data and to compare the multivariate and univariate method anthropometric models. The second aim of the paper is to define the crane cabin interior space dimensions that enable anthropometric convenience. To facilitate the cabin design, the anthropometric dimensions of 64 crane operators in the first sample and 19 more in the second sample were collected in Serbia. The multivariate anthropometric models, spanning 95% of the population on the basis of a set of 8 anthropometric dimensions, have been developed. The percentile method was also used on the same set of data. The dimensions of the interior space, necessary for the accommodation of the crane operator, are 1174×1080×1865 mm. The percentiles results for the 5th and 95th model are within the obtained dimensions. The results of this study may prove useful to crane cabin designers in eliminating anthropometric inconsistencies and improving the health of operators, but can also aid in improving the safety, performance and financial results of the companies where crane cabins operate.

  2. The interior transmission spectrum in one dimension

    International Nuclear Information System (INIS)

    Hickmann, Kyle S

    2012-01-01

    This paper seeks conditions on acoustic profiles c(x) and b(x) which imply the existence of intervals free of transmission eigenvalues. The existence of intervals free of transmission eigenvalues has important implications in the question of unique recovery of the acoustic profile for inverse acoustic scattering theory using the linear sampling method and for the inverse source problem in thermoacoustic tomography. We examine the interior transmission spectrum relative to two acoustic profiles on the unit interval. This research includes the case when the difference of the two acoustic profiles changes sign and is, to the author's knowledge, the only work to date on the interior transmission spectrum allowing this behavior. It is shown that for a large class of acoustic profiles the transmission spectrum is asymptotically sparse. The spectrum exhibits three distinct types of behavior dependent on the relation of the two acoustic profiles. Numerical examples of each type of behavior are given which show how the transmission eigenvalues are distributed depending on the relation between c(x) and b(x). Our method of study is to reduce the interior transmission problem on [0, 1] to a problem of finding roots of a determinant of fundamental solutions to a Sturm–Liouville problem. The asymptotic expansion of solutions of the Sturm–Liouville problem then allows us to analyze properties of the transmission spectrum for large values of the wavenumber. (paper)

  3. Photophysical studies of PET based acridinedione dyes with globular protein: Bovine serum albumin

    International Nuclear Information System (INIS)

    Rajendran, Kumaran; Perumal, Ramamurthy

    2010-01-01

    Interaction of acridinedione dyes with model transport proteins, bovine serum albumin (BSA) in aqueous solution were investigated by fluorescence spectral studies. A fluorescence enhancement was observed on the addition of BSA to photoinduced electron transfer (PET) based acridinedione dyes, which posses C 6 H 4 (p-OCH 3 ) in the 9th position of the basic acridinedione ring. On the contrary, the addition of BSA to non-PET based acridinedione dyes with methyl or phenyl substitution in the 9th position does not result in any fluorescence enhancement. The enhancement in the fluorescence intensity is attributed to the suppression of PET process through space between -OCH 3 group and the acridinedione moiety is elucidated by steady state fluorescence measurements. The fluorescence anisotropy value (r) of 0.40 reveals that the motion of the dye molecule is highly constrained and is largely confined to the rigid microenvironment of the protein molecule. The binding constant (K) was found to be in the order of 6.0x10 3 [M] -1 , which implies the existence of hydrophobic interaction between the PET based dye and BSA. Time resolved fluorescence lifetime measurements reveal that the PET based acridinedione dye preferably binds in the hydrophobic interior of BSA.

  4. Feasibility of protein turnover studies in prototroph Saccharomyces cerevisiae strains.

    Science.gov (United States)

    Martin-Perez, Miguel; Villén, Judit

    2015-04-07

    Quantitative proteomics studies of yeast that use metabolic labeling with amino acids rely on auxotrophic mutations of one or more genes on the amino acid biosynthesis pathways. These mutations affect yeast metabolism and preclude the study of some biological processes. Overcoming this limitation, it has recently been described that proteins in a yeast prototrophic strain can also be metabolically labeled with heavy amino acids. However, the temporal profiles of label incorporation under the different phases of the prototroph's growth have not been examined. Labeling trajectories are important in the study of protein turnover and dynamics, in which label incorporation into proteins is monitored across many time points. Here we monitored protein labeling trajectories for 48 h after a pulse with heavy lysine in a yeast prototrophic strain and compared them with those of a lysine auxotrophic yeast. Labeling was successful in prototroph yeast during exponential growth phase but not in stationary phase. Furthermore, we were able to determine the half-lives of more than 1700 proteins during exponential phase of growth with high accuracy and reproducibility. We found a median half-life of 2 h in both strains, which corresponds with the cellular doubling time. Nucleolar and ribosomal proteins showed short half-lives, whereas mitochondrial proteins and other energy production enzymes presented longer half-lives. Except for some proteins involved in lysine biosynthesis, we observed a high correlation in protein half-lives between prototroph and auxotroph strains. Overall, our results demonstrate the feasibility of using prototrophs for proteomic turnover studies and provide a reliable data set of protein half-lives in exponentially growing yeast.

  5. NMR studies of a new family of DNA binding proteins: the THAP proteins

    International Nuclear Information System (INIS)

    Gervais, Virginie; Campagne, Sébastien; Durand, Jade; Muller, Isabelle; Milon, Alain

    2013-01-01

    The THAP (THanatos-Associated Protein) domain is an evolutionary conserved C2CH zinc-coordinating domain shared with a large family of cellular factors (THAP proteins). Many members of the THAP family act as transcription factors that control cell proliferation, cell cycle progression, angiogenesis, apoptosis and epigenetic gene silencing. They recognize specific DNA sequences in the promoters of target genes and subsequently recruit effector proteins. Recent structural and functional studies have allowed getting better insight into the nuclear and cellular functions of some THAP members and the molecular mechanisms by which they recognize DNA. The present article reviews recent advances in the knowledge of the THAP domains structures and their interaction with DNA, with a particular focus on NMR. It provides the solution structure of the THAP domain of THAP11, a recently characterized human THAP protein with important functions in transcription and cell growth in colon cancer.

  6. NMR studies of a new family of DNA binding proteins: the THAP proteins

    Energy Technology Data Exchange (ETDEWEB)

    Gervais, Virginie, E-mail: virginie.gervais@ipbs.fr [IPBS (Institut de Pharmacologie et de Biologie Structurale), CNRS (France); Campagne, Sebastien [ETH Zurich (Switzerland); Durand, Jade; Muller, Isabelle; Milon, Alain, E-mail: alain.milon@ipbs.fr [IPBS (Institut de Pharmacologie et de Biologie Structurale), CNRS (France)

    2013-05-15

    The THAP (THanatos-Associated Protein) domain is an evolutionary conserved C2CH zinc-coordinating domain shared with a large family of cellular factors (THAP proteins). Many members of the THAP family act as transcription factors that control cell proliferation, cell cycle progression, angiogenesis, apoptosis and epigenetic gene silencing. They recognize specific DNA sequences in the promoters of target genes and subsequently recruit effector proteins. Recent structural and functional studies have allowed getting better insight into the nuclear and cellular functions of some THAP members and the molecular mechanisms by which they recognize DNA. The present article reviews recent advances in the knowledge of the THAP domains structures and their interaction with DNA, with a particular focus on NMR. It provides the solution structure of the THAP domain of THAP11, a recently characterized human THAP protein with important functions in transcription and cell growth in colon cancer.

  7. Dynamical measurements of the interior structure of exoplanets

    International Nuclear Information System (INIS)

    Becker, Juliette C.; Batygin, Konstantin

    2013-01-01

    Giant gaseous planets often reside on orbits in sufficient proximity to their host stars for the planetary quadrupole gravitational field to become non-negligible. In presence of an additional planetary companion, a precise characterization of the system's orbital state can yield meaningful constraints on the transiting planet's interior structure. However, such methods can require a very specific type of system. This paper explores the dynamic range of applicability of these methods and shows that interior structure calculations are possible for a wide array of orbital architectures. The HAT-P-13 system is used as a case study, and the implications of perturbations arising from a third distant companion on the feasibility of an interior calculation are discussed. We find that the method discussed here is likely to be useful in studying other planetary systems, allowing the possibility of an expanded survey of the interiors of exoplanets.

  8. Scout-view assisted interior micro-CT

    International Nuclear Information System (INIS)

    Sharma, Kriti Sen; Narayanan, Shree; Agah, Masoud; Holzner, Christian; Vasilescu, Dragoş M; Jin, Xin; Hoffman, Eric A; Yu, Hengyong; Wang, Ge

    2013-01-01

    Micro computed tomography (micro-CT) is a widely-used imaging technique. A challenge of micro-CT is to quantitatively reconstruct a sample larger than the field-of-view (FOV) of the detector. This scenario is characterized by truncated projections and associated image artifacts. However, for such truncated scans, a low resolution scout scan with an increased FOV is frequently acquired so as to position the sample properly. This study shows that the otherwise discarded scout scans can provide sufficient additional information to uniquely and stably reconstruct the interior region of interest. Two interior reconstruction methods are designed to utilize the multi-resolution data without significant computational overhead. While most previous studies used numerically truncated global projections as interior data, this study uses truly hybrid scans where global and interior scans were carried out at different resolutions. Additionally, owing to the lack of standard interior micro-CT phantoms, we designed and fabricated novel interior micro-CT phantoms for this study to provide means of validation for our algorithms. Finally, two characteristic samples from separate studies were scanned to show the effect of our reconstructions. The presented methods show significant improvements over existing reconstruction algorithms. (paper)

  9. NMR structural studies of peptides and proteins in membranes

    Energy Technology Data Exchange (ETDEWEB)

    Opella, S J [Pennsylvania Univ., Philadelphia, PA (United States). Dept. of Chemistry

    1994-12-31

    The use of NMR methodology in structural studies is described as applicable to larger proteins, considering that the majority of membrane proteins is constructed from a limited repertoire of structural and dynamic elements. The membrane associated domains of these proteins are made up of long hydrophobic membrane spanning helices, shorter amphipathic bridging helices in the plane of the bilayer, connecting loops with varying degrees of mobility, and mobile N- and C- terminal sections. NMR studies have been successful in identifying all of these elements and their orientations relative to each other and the membrane bilayer 19 refs., 9 figs.

  10. Protein crystal growth studies at the Center for Macromolecular Crystallography

    International Nuclear Information System (INIS)

    DeLucas, Lawrence J.; Long, Marianna M.; Moore, Karen M.; Harrington, Michael; McDonald, William T.; Smith, Craig D.; Bray, Terry; Lewis, Johanna; Crysel, William B.; Weise, Lance D.

    2000-01-01

    The Center for Macromolecular Crystallography (CMC) has been involved in fundamental studies of protein crystal growth (PCG) in microgravity and in our earth-based laboratories. A large group of co-investigators from academia and industry participated in these experiments by providing protein samples and by performing the x-ray crystallographic analysis. These studies have clearly demonstrated the usefulness of a microgravity environment for enhancing the quality and size of protein crystals. Review of the vapor diffusion (VDA) PCG results from nineteen space shuttle missions is given in this paper

  11. Can microbes compete with cows for sustainable protein production - A feasibility study on high quality protein.

    Science.gov (United States)

    Vestergaard, Mike; Chan, Siu Hung Joshua; Jensen, Peter Ruhdal

    2016-11-08

    An increasing population and their increased demand for high-protein diets will require dramatic changes in the food industry, as limited resources and environmental issues will make animal derived foods and proteins, gradually more unsustainable to produce. To explore alternatives to animal derived proteins, an economic model was built around the genome-scale metabolic network of E. coli to study the feasibility of recombinant protein production as a food source. Using a novel model, we predicted which microbial production strategies are optimal for economic return, by capturing the tradeoff between the market prices of substrates, product output and the efficiency of microbial production. A case study with the food protein, Bovine Alpha Lactalbumin was made to evaluate the upstream economic feasibilities. Simulations with different substrate profiles at maximum productivity were used to explore the feasibility of recombinant Bovine Alpha Lactalbumin production coupled with market prices of utilized materials. We found that recombinant protein production could be a feasible food source and an alternative to traditional sources.

  12. Can microbes compete with cows for sustainable protein production - A feasibility study on high quality protein

    Science.gov (United States)

    Vestergaard, Mike; Chan, Siu Hung Joshua; Jensen, Peter Ruhdal

    2016-11-01

    An increasing population and their increased demand for high-protein diets will require dramatic changes in the food industry, as limited resources and environmental issues will make animal derived foods and proteins, gradually more unsustainable to produce. To explore alternatives to animal derived proteins, an economic model was built around the genome-scale metabolic network of E. coli to study the feasibility of recombinant protein production as a food source. Using a novel model, we predicted which microbial production strategies are optimal for economic return, by capturing the tradeoff between the market prices of substrates, product output and the efficiency of microbial production. A case study with the food protein, Bovine Alpha Lactalbumin was made to evaluate the upstream economic feasibilities. Simulations with different substrate profiles at maximum productivity were used to explore the feasibility of recombinant Bovine Alpha Lactalbumin production coupled with market prices of utilized materials. We found that recombinant protein production could be a feasible food source and an alternative to traditional sources.

  13. Studies on new antifreeze protein from the psychrophilic diatom ...

    African Journals Online (AJOL)

    Studies on new antifreeze protein from the psychrophilic diatom, Fragilariopsis cylindrus. ... African Journal of Biotechnology. Journal Home · ABOUT THIS ... The predicted gene product, AfpA, had a molecular mass of 27 kDa. Expression of ...

  14. Creating Library Interiors: Planning and Design Considerations.

    Science.gov (United States)

    Jones, Plummer Alston, Jr.; Barton, Phillip K.

    1997-01-01

    Examines design considerations for public library interiors: access; acoustical treatment; assignable and nonassignable space; building interiors: ceilings, clocks, color, control, drinking fountains; exhibit space: slotwall display, floor coverings, floor loading, furniture, lighting, mechanical systems, public address, copying machines,…

  15. Study of the transport of mercurial compounds by seric proteins

    International Nuclear Information System (INIS)

    Jullien-Saint Guily, Nicole

    1970-01-01

    A bond between the seric proteins and various mercurial compounds labeled with the radioisotopes 203 Hg and 197 Hg was demonstrated by means of research methods specific to radioactivity combined with protein separation techniques. In the course of this study it was shown how strongly the composition of the buffer during electrophoretic migration influences the transport of certain organo-mercurial compounds by the seric proteins. By means of a thioloprive: N - ethyl - maleimide, labeled with 14 C, it was proved that the bonding sites between the proteins and the mercurial compounds were the thiol groups of the proteins but that other bonding sites, in particular the amino groups, could also be involved. (author) [fr

  16. Effect of area on color harmony in interior spaces

    OpenAIRE

    Odabaşıoğlu, Seden

    2015-01-01

    Cataloged from PDF version of article. Thesis (Ph.D.): Bilkent University, Department of Interior Architecture and Environmental Design, İhsan Doğramacı Bilkent University, 2015. Includes bibliographical references (leaves 142-152). The main aim of this study is to examine the effect of area on color harmony in interior spaces. Area in color harmony is the relative amount of different color areas represented as a proportion on which color harmony depends. Colors in the color ...

  17. State Skill Standards: Housing and Interior Design

    Science.gov (United States)

    Nevada Department of Education, 2008

    2008-01-01

    Meeting the Housing and Interior Design Standards will provide students with skills for personal family life and towards becoming a professional in the interior design field. The mission of Housing and Interior Design education is to prepare students for family life, work life, and careers in the fashion industry by creating opportunities to…

  18. Market Aspects of an Interior Design Program.

    Science.gov (United States)

    Gold, Judy E.

    A project was conducted to evaluate a proposed interior design program in order to determine the marketability (job availability in the field of interior design and home furnishings merchandising) and the feasibility (educational requirements for entrance into the interior design and home furnishings merchandising job market) of the program. To…

  19. Self-assembling peptide and protein nanodiscs for studies of membrane proteins

    DEFF Research Database (Denmark)

    Midtgaard, Søren Roi

    Particles containing both lipids and proteins (so-called lipoproteins) are vital to study. They are selfassembling particles that, in the human body, are responsible for the transport of lipids and cholesterol. Due to the increasing problems of obesity and related illnesses in the world, obtaining...... more knowledge about the cholesterol and lipid metabolism is paramount. As an example, in 2012, cardiovascular disease was still the main cause of death in the U.S. This means that the study of lipoproteins is not only of pure academic interest but vital to current world problems. Another reason...... of proteins encoded by the human genome. G-protein coupled receptors mediate the majority of hormone and neurotransmitter signals as well as being responsible for perception of light, smell and taste in the human body, and a number of Nobel prizes has been awarded based on their study. Structural...

  20. Molecular modeling of protein materials: case study of elastin

    International Nuclear Information System (INIS)

    Tarakanova, Anna; Buehler, Markus J

    2013-01-01

    Molecular modeling of protein materials is a quickly growing area of research that has produced numerous contributions in fields ranging from structural engineering to medicine and biology. We review here the history and methods commonly employed in molecular modeling of protein materials, emphasizing the advantages for using modeling as a complement to experimental work. We then consider a case study of the protein elastin, a critically important ‘mechanical protein’ to exemplify the approach in an area where molecular modeling has made a significant impact. We outline the progression of computational modeling studies that have considerably enhanced our understanding of this important protein which endows elasticity and recoil to the tissues it is found in, including the skin, lungs, arteries and the heart. A vast collection of literature has been directed at studying the structure and function of this protein for over half a century, the first molecular dynamics study of elastin being reported in the 1980s. We review the pivotal computational works that have considerably enhanced our fundamental understanding of elastin's atomistic structure and its extraordinary qualities—focusing on two in particular: elastin's superb elasticity and the inverse temperature transition—the remarkable ability of elastin to take on a more structured conformation at higher temperatures, suggesting its effectiveness as a biomolecular switch. Our hope is to showcase these methods as both complementary and enriching to experimental approaches that have thus far dominated the study of most protein-based materials. (topical review)

  1. 3D radar wavefield tomography of comet interiors

    Science.gov (United States)

    Sava, Paul; Asphaug, Erik

    2018-04-01

    Answering fundamental questions about the origin and evolution of small planetary bodies hinges on our ability to image their surface and interior structure in detail and at high resolution. The interior structure is not easily accessible without systematic imaging using, e.g., radar transmission and reflection data from multiple viewpoints, as in medical tomography. Radar tomography can be performed using methodology adapted from terrestrial exploration seismology. Our feasibility study primarily focuses on full wavefield methods that facilitate high quality imaging of small body interiors. We consider the case of a monostatic system (co-located transmitters and receivers) operated in various frequency bands between 5 and 15 MHz, from a spacecraft in slow polar orbit around a spinning comet nucleus. Using realistic numerical experiments, we demonstrate that wavefield techniques can generate high resolution tomograms of comets nuclei with arbitrary shape and complex interior properties.

  2. Study of the interactions between riboflavin and protein

    International Nuclear Information System (INIS)

    Zhao Hongwei; Zhang Zhaoxia; Zhu Hongping; Ge Min; Miao Jinling; Wang Wenfeng; Yao Side

    2006-01-01

    Riboflavin (VB 2 ), a vitamin that is a natural constituent of living organisms, plays an important role in the process of metabolism and it is essential for normal cellular functions and growth. As an endogenous photosensitizer, riboflavin induces photooxidation damages to cells of skin and eye, causing inflammation, accelerated aging and mutation. The photodynamic actions of riboflavin on DNA have been studied extensively, however, its photodynamic actions on protein and enzyme are less studied due to the complex types and structures of proteins, and less attentions have been paid to photosensitive protein damages than DNA. In our lab, the interactions between riboflavin and serum albumin and lysozyme have been carried out by using transient absorption spectrometry, emission spectrometer analysis and electrophoresis techniques. It was found that stable state products and transient process of photosensitive damage to proteins were closely relative to concentration of riboflavin, time of irradiation and the atmosphere of the solutions. The results indicates that proteins can be photosensitive damaged by riboflavin irradiated by UV lights. Riboflavin can quench the intrinsic fluorescence of protein. Both dynamic and static quenching are simultaneous involved. The binding constants, the kinetics and spectroscopic properties of riboflavin interaction with albumin and lysozyme have also been investigated. Mechanisms of the photosensitive damages to proteins were discussed. The experiments also indicated that antioxidants such as melatonin and chlorogenic acid can reduce the damage of lysozyme effectively. (authors)

  3. Studying pressure denaturation of a protein by molecular dynamics simulations.

    Science.gov (United States)

    Sarupria, Sapna; Ghosh, Tuhin; García, Angel E; Garde, Shekhar

    2010-05-15

    Many globular proteins unfold when subjected to several kilobars of hydrostatic pressure. This "unfolding-up-on-squeezing" is counter-intuitive in that one expects mechanical compression of proteins with increasing pressure. Molecular simulations have the potential to provide fundamental understanding of pressure effects on proteins. However, the slow kinetics of unfolding, especially at high pressures, eliminates the possibility of its direct observation by molecular dynamics (MD) simulations. Motivated by experimental results-that pressure denatured states are water-swollen, and theoretical results-that water transfer into hydrophobic contacts becomes favorable with increasing pressure, we employ a water insertion method to generate unfolded states of the protein Staphylococcal Nuclease (Snase). Structural characteristics of these unfolded states-their water-swollen nature, retention of secondary structure, and overall compactness-mimic those observed in experiments. Using conformations of folded and unfolded states, we calculate their partial molar volumes in MD simulations and estimate the pressure-dependent free energy of unfolding. The volume of unfolding of Snase is negative (approximately -60 mL/mol at 1 bar) and is relatively insensitive to pressure, leading to its unfolding in the pressure range of 1500-2000 bars. Interestingly, once the protein is sufficiently water swollen, the partial molar volume of the protein appears to be insensitive to further conformational expansion or unfolding. Specifically, water-swollen structures with relatively low radii of gyration have partial molar volume that are similar to that of significantly more unfolded states. We find that the compressibility change on unfolding is negligible, consistent with experiments. We also analyze hydration shell fluctuations to comment on the hydration contributions to protein compressibility. Our study demonstrates the utility of molecular simulations in estimating volumetric properties

  4. Structural study of surfactant-dependent interaction with protein

    Energy Technology Data Exchange (ETDEWEB)

    Mehan, Sumit; Aswal, Vinod K., E-mail: vkaswal@barc.gov.in [Solid State Physics Division, Bhabha Atomic Research Centre, Mumbai 400 085 (India); Kohlbrecher, Joachim [Laboratory for Neutron Scattering, Paul Scherrer Institut, CH-5232 PSI Villigen (Switzerland)

    2015-06-24

    Small-angle neutron scattering (SANS) has been used to study the complex structure of anionic BSA protein with three different (cationic DTAB, anionic SDS and non-ionic C12E10) surfactants. These systems form very different surfactant-dependent complexes. We show that the structure of protein-surfactant complex is initiated by the site-specific electrostatic interaction between the components, followed by the hydrophobic interaction at high surfactant concentrations. It is also found that hydrophobic interaction is preferred over the electrostatic interaction in deciding the resultant structure of protein-surfactant complexes.

  5. Comparative study on the effects of whey protein isolate and isolated soy protein on healthy adults

    International Nuclear Information System (INIS)

    Ezzal-arab, A.

    2003-01-01

    The objective of study was to investigate the effects of whey protein isolate (WPI) and isolated soy protein (ISP) on total serum levels of amino acids (glutathione, methionine and cystine), triglycerides serum cholesterol, HDL-cholesterol, LDL-cholesterol, thyroxine (T 4 ) and estradiol hormone (E 2 ). The results revealed that the WPI group showed significant increased glutathione, methionine and cystine levels while the SPI group exhibited only significant decreased cystine level. The WPI group did not show significant change in T 4 thyroid activity, whereas the SPI group had significant decreased T 4 thyroid hormone. Females ingested the WPI showed significant decrease in estradiol levels compared to those in the SPI group. The data showed significant decreases in total cholesterol, triglycerides and LDL-cholesterol regardless of ingesting whey protein or soy protein while HDL-cholesterol did not show any change with both proteins. The results of this study support the hypothesis that WPI may be more conductive to good health than SPI because it can increase the levels of some amino acids which responsible for the life of the cell, enhance immunity and promote health in general

  6. Application of the random coil index to studying protein flexibility

    Energy Technology Data Exchange (ETDEWEB)

    Berjanskii, Mark V.; Wishart, David S. [University of Alberta, Department of Computing Science (Canada)], E-mail: david.wishart@ualberta.ca

    2008-01-15

    Protein flexibility lies at the heart of many protein-ligand binding events and enzymatic activities. However, the experimental measurement of protein motions is often difficult, tedious and error-prone. As a result, there is a considerable interest in developing simpler and faster ways of quantifying protein flexibility. Recently, we described a method, called Random Coil Index (RCI), which appears to be able to quantitatively estimate model-free order parameters and flexibility in protein structural ensembles using only backbone chemical shifts. Because of its potential utility, we have undertaken a more detailed investigation of the RCI method in an attempt to ascertain its underlying principles, its general utility, its sensitivity to chemical shift errors, its sensitivity to data completeness, its applicability to other proteins, and its general strengths and weaknesses. Overall, we find that the RCI method is very robust and that it represents a useful addition to traditional methods of studying protein flexibility. We have implemented many of the findings and refinements reported here into a web server that allows facile, automated predictions of model-free order parameters, MD RMSF and NMR RMSD values directly from backbone {sup 1}H, {sup 13}C and {sup 15}N chemical shift assignments. The server is available at http: //wishart.biology.ualberta.ca/rcihttp://wishart.biology.ualberta.ca/rci.

  7. Physics of neutron star interiors

    International Nuclear Information System (INIS)

    Blaschke, D.

    2001-01-01

    Neutron stars are the densest observable bodies in our universe. Born during the gravitational collapse of luminous stars - a birth heralded by spectacular supernova explosions - they open a window on a world where the state of the matter and the strength of the fields are anything but ordinary. This book is a collection of pedagogical lectures on the theory of neutron stars, and especially their interiors, at the forefront of current research. It adresses graduate students and researchers alike, and should be particularly suitable as a text bridging the gap between standard textbook material and the research literature

  8. Magnetohydrodynamics of neutron star interiors

    International Nuclear Information System (INIS)

    Easson, I.; Pethick, C.J.

    1979-01-01

    Magnetohydrodynamic equations for the charged particles in the fluid interior of a neutron star are derived from the Landau-Boltzmann kinetic equations. It is assumed that the protons are normal and the neutrons are superfluid. The dissipative processes associated with the weak interactions are shown to be negligible except in very hot neutron stars; we neglect them here. Among the topics discussed are: the influence of the neutron-proton nuclear force (Fermi liquid corrections) on the magnetohydrodynamics; the effects of the magnetic field on the pressure, viscosity, and heat conductivity tensors; the plasma equation of state; and the form of the generalized Ohm's law

  9. Predicting Protein-Protein Interactions Using BiGGER: Case Studies

    Directory of Open Access Journals (Sweden)

    Rui M. Almeida

    2016-08-01

    Full Text Available The importance of understanding interactomes makes preeminent the study of protein interactions and protein complexes. Traditionally, protein interactions have been elucidated by experimental methods or, with lower impact, by simulation with protein docking algorithms. This article describes features and applications of the BiGGER docking algorithm, which stands at the interface of these two approaches. BiGGER is a user-friendly docking algorithm that was specifically designed to incorporate experimental data at different stages of the simulation, to either guide the search for correct structures or help evaluate the results, in order to combine the reliability of hard data with the convenience of simulations. Herein, the applications of BiGGER are described by illustrative applications divided in three Case Studies: (Case Study A in which no specific contact data is available; (Case Study B when different experimental data (e.g., site-directed mutagenesis, properties of the complex, NMR chemical shift perturbation mapping, electron tunneling on one of the partners is available; and (Case Study C when experimental data are available for both interacting surfaces, which are used during the search and/or evaluation stage of the docking. This algorithm has been extensively used, evidencing its usefulness in a wide range of different biological research fields.

  10. Feasibility study for application of the compressed-sensing framework to interior computed tomography (ICT) for low-dose, high-accurate dental x-ray imaging

    Science.gov (United States)

    Je, U. K.; Cho, H. M.; Cho, H. S.; Park, Y. O.; Park, C. K.; Lim, H. W.; Kim, K. S.; Kim, G. A.; Park, S. Y.; Woo, T. H.; Choi, S. I.

    2016-02-01

    In this paper, we propose a new/next-generation type of CT examinations, the so-called Interior Computed Tomography (ICT), which may presumably lead to dose reduction to the patient outside the target region-of-interest (ROI), in dental x-ray imaging. Here an x-ray beam from each projection position covers only a relatively small ROI containing a target of diagnosis from the examined structure, leading to imaging benefits such as decreasing scatters and system cost as well as reducing imaging dose. We considered the compressed-sensing (CS) framework, rather than common filtered-backprojection (FBP)-based algorithms, for more accurate ICT reconstruction. We implemented a CS-based ICT algorithm and performed a systematic simulation to investigate the imaging characteristics. Simulation conditions of two ROI ratios of 0.28 and 0.14 between the target and the whole phantom sizes and four projection numbers of 360, 180, 90, and 45 were tested. We successfully reconstructed ICT images of substantially high image quality by using the CS framework even with few-view projection data, still preserving sharp edges in the images.

  11. Design of asymmetric particles containing a charged interior and a neutral surface charge: comparative study on in vivo circulation of polyelectrolyte microgels.

    Science.gov (United States)

    Chen, Kai; Xu, Jing; Luft, J Christopher; Tian, Shaomin; Raval, Jay S; DeSimone, Joseph M

    2014-07-16

    Lowering the modulus of hydrogel particles could enable them to bypass in vivo physical barriers that would otherwise filter particles with similar size but higher modulus. Incorporation of electrolyte moieties into the polymer network of hydrogel particles to increase the swelling ratio is a straightforward and quite efficient way to decrease the modulus. In addition, charged groups in hydrogel particles can also help secure cargoes. However, the distribution of charged groups on the surface of a particle can accelerate the clearance of particles. Herein, we developed a method to synthesize highly swollen microgels of precise size with near-neutral surface charge while retaining interior charged groups. A strategy was employed to enable a particle to be highly cross-linked with very small mesh size, and subsequently PEGylated to quench the exterior amines only without affecting the internal amines. Acidic degradation of the cross-linker allows for swelling of the particles to microgels with a desired size and deformability. The microgels fabricated demonstrated extended circulation in vivo compared to their counterparts with a charged surface, and could potentially be utilized in in vivo applications including as oxygen carriers or nucleic acid scavengers.

  12. Interior-exterior connection in architectural design based on the incorporation of spatial in between layers. Study of four architectural projects

    Directory of Open Access Journals (Sweden)

    Krstić Hristina

    2016-01-01

    Full Text Available Different spatial layers in the architectural structure of a building can create particular spatial relations and an architectural space that cannot be defined as an inner space or as an outer space, but one which has the characteristics of both. This space, which can be called “in between space”, appears as the result of a specific design concept in which the architectural composition is created by gradual insertion of volumes one inside another, like a box that is placed inside a box, inside of which is placed another smaller box and so on. The incorporation of various layers in the spatial arrangement of volumes in certain architectural compositions can be conceived as a possible approach in connecting the interior and exterior. This kind of conceptual design distinguishes itself from the common approach by its specific architecture that offers richness, variety, complexity and unique perception of space, thereby increasing its value. The paper investigates this particular concept through the analysis of four residential houses (Villa Le Lac by Le Corbusier, Solar House by Oswald Mathias Ungers, House N by Sou Fujimoto and Guerrero House by Alberto Campo Baeza, and it strives to find out the concept’s use and advantages, all with the aim of opening up new possibilities in the design of buildings and enriching the design process.

  13. Environmental Approach In Interior Design Education In Turkey

    Directory of Open Access Journals (Sweden)

    Derya Adıgüzel

    2013-12-01

    Full Text Available These days there has been a severe encroachment on nature, a large amount of waste being generated, and natural resources being used irresponsibly during the design, application and usage phases of buildings. Environmental sensitivity is necessary during the construction of new buildings and re-usage of current buildings to resolve environmental problems. In order to increase environmental sensitivity, a great responsibility falls onto interior design along with other disciplines during the creation of living spaces. The accumulation of knowledge from career training and the level of awareness will determine the practical development of environmentally sensitive interior design. Therefore the purpose of this article is to make a determination of the current state of environmental design in interior design education in Turkey. The degree to which environmental design is reflected in the curricula of interior design departments was studied. The relationship between the awareness level of the students and the educational programs will be presented through three samples. Surveys were conducted at three universities that have varying degrees of environmental design within the interior design curricula. As a result, the importance of having an environmentally conscious design understanding within the curricula of interior design and recommendations for improving the environmental design awareness of students will be presented in this article.

  14. Effects of coloured lighting on the perception of interior spaces.

    Science.gov (United States)

    Odabaşioğlu, Seden; Olguntürk, Nіlgün

    2015-02-01

    Use of coloured lighting in interior spaces has become prevalent in recent years. Considerable importance is ascribed to coloured lighting in interior and lighting design. The effects of colour on the perception of interior spaces have been studied as surface colour; but here, the effects of three different types of chromatic light were investigated. The lighting differed in colour (red, green and white) and perceptions of interior space were assessed. 97 participants (59 women, 38 men; M age = 21.4 yr.) evaluated the experiment room on a questionnaire assessing eight evaluative factors: Pleasantness, Arousal, Aesthetics, Usefulness, Comfort, Spaciousness, Colour, and Lighting quality. Perceptions of the room differed by colour of lighting for some of the evaluative factors, but there was no sex difference in perceptions. Interior spaces may be perceived as equally pleasant under white, green and red lighting. Under white lighting a space is perceived as more useful, spacious, clear, and luminous. Green lighting would make the same effect. Green and white lighting were perceived equally comfortable in an interior space. Chromatic coloured lighting was perceived to be more aesthetic than white lighting. The results support previous findings for some evaluative factors, but differed for others.

  15. Interior microelectrolysis oxidation of polyester wastewater and its treatment technology

    Energy Technology Data Exchange (ETDEWEB)

    Yang Xiaoyi, E-mail: yangxiaoyi@buaa.edu.cn [Department of Thermal Energy Engineering, BeiHang University, Beijing 100191 (China)

    2009-09-30

    This paper has investigated the effects of interior microelectrolysis pretreatment on polyester wastewater treatment and analyzed its mechanism on COD and surfactant removal. The efficiency of interior microelectrolysis is mainly influenced by solution pH, aeration and reaction time. Contaminants can be removed not only by redox reaction and flocculation in the result of ferrous and ferric hydroxides but also by electrophoresis under electric fields created by electron flow. pH confirms the chemical states of surfactants, Fe(II)/Fe(III) ratio and the redox potential, and thus influences the effects of electrophoresis, flocculation and redox action on contaminant removal. Anaerobic and aerobic batch tests were performed to study the degradation of polyester wastewater. The results imply that interior microelectrolysis and anaerobic pretreatment are lacking of effectiveness if applied individually in treating polyester wastewater in spite of their individual advantages. The interior microelectrolysis-anaerobic-aerobic process was investigated to treat polyester wastewater with comparison with interior microelectrolysis-aerobic process and anaerobic-aerobic process. High COD removal efficiencies have been gotten by the combination of interior microelectrolysis with anaerobic technology and aerobic technology. The results also imply that only biological treatment was less effective in polyester wastewater treatment.

  16. Interior microelectrolysis oxidation of polyester wastewater and its treatment technology

    International Nuclear Information System (INIS)

    Yang Xiaoyi

    2009-01-01

    This paper has investigated the effects of interior microelectrolysis pretreatment on polyester wastewater treatment and analyzed its mechanism on COD and surfactant removal. The efficiency of interior microelectrolysis is mainly influenced by solution pH, aeration and reaction time. Contaminants can be removed not only by redox reaction and flocculation in the result of ferrous and ferric hydroxides but also by electrophoresis under electric fields created by electron flow. pH confirms the chemical states of surfactants, Fe(II)/Fe(III) ratio and the redox potential, and thus influences the effects of electrophoresis, flocculation and redox action on contaminant removal. Anaerobic and aerobic batch tests were performed to study the degradation of polyester wastewater. The results imply that interior microelectrolysis and anaerobic pretreatment are lacking of effectiveness if applied individually in treating polyester wastewater in spite of their individual advantages. The interior microelectrolysis-anaerobic-aerobic process was investigated to treat polyester wastewater with comparison with interior microelectrolysis-aerobic process and anaerobic-aerobic process. High COD removal efficiencies have been gotten by the combination of interior microelectrolysis with anaerobic technology and aerobic technology. The results also imply that only biological treatment was less effective in polyester wastewater treatment.

  17. Interior microelectrolysis oxidation of polyester wastewater and its treatment technology.

    Science.gov (United States)

    Yang, Xiaoyi

    2009-09-30

    This paper has investigated the effects of interior microelectrolysis pretreatment on polyester wastewater treatment and analyzed its mechanism on COD and surfactant removal. The efficiency of interior microelectrolysis is mainly influenced by solution pH, aeration and reaction time. Contaminants can be removed not only by redox reaction and flocculation in the result of ferrous and ferric hydroxides but also by electrophoresis under electric fields created by electron flow. pH confirms the chemical states of surfactants, Fe(II)/Fe(III) ratio and the redox potential, and thus influences the effects of electrophoresis, flocculation and redox action on contaminant removal. Anaerobic and aerobic batch tests were performed to study the degradation of polyester wastewater. The results imply that interior microelectrolysis and anaerobic pretreatment are lacking of effectiveness if applied individually in treating polyester wastewater in spite of their individual advantages. The interior microelectrolysis-anaerobic-aerobic process was investigated to treat polyester wastewater with comparison with interior microelectrolysis-aerobic process and anaerobic-aerobic process. High COD removal efficiencies have been gotten by the combination of interior microelectrolysis with anaerobic technology and aerobic technology. The results also imply that only biological treatment was less effective in polyester wastewater treatment.

  18. In vitro study of proteins surface activity by tritium probe

    International Nuclear Information System (INIS)

    Chernysheva, M.G.; Badun, G.A.

    2010-01-01

    A new technique for in vitro studies of biomacromolecules interactions, their adsorption at aqueous/organic liquid interfaces and distribution in the bulk of liquid/liquid systems was developed. The method includes (1) tritium labeling of biomolecules by tritium thermal activation method and (2) scintillation phase step with organic phase, which can be concerned as a model of cellular membrane. Two globular proteins lysozyme and human serum albumin tested. We have determined the conditions of tritium labeling when labeled by-products can be easy separated by means of dialysis and size-exclusion chromatography. Scintillation phase experiments were conducted for three types of organic liquids. Thus, the influences of the nature of organic phase on proteins adsorption and its distribution in the bulk of aqueous/organic liquid system were determined. It was found that proteins possess high surface activity at aqueous/organic liquid interface. Furthermore, values of hydrophobicity of globular proteins were found by the experiment. (author)

  19. Time-resolved infrared studies of protein conformational dynamics

    Energy Technology Data Exchange (ETDEWEB)

    Woodruff, W.H.; Causgrove, T.P.; Dyer, R.B. [Los Alamos National Laboratory, NM (United States); Callender, R.H. [Univ. of New York, NY (United States)

    1994-12-01

    We have demonstrated that TRIR in the amide I region gives structural information regarding protein conformational changes in realtime, both on processes involved in the development of the functional structure (protein folding) and on protein structural changes that accompany the functional dynamics of the native structure. Assignment of many of the amide I peaks to specific amide or sidechain structures will require much additional effort. Specifically, the congestion and complexity of the protein vibrational spectra dictate that isotope studies are an absolute requirement for more than a qualitative notion of the structural interpretation of these measurements. It is clear, however, that enormous potential exists for elucidating structural relaxation dynamics and energetics with a high degree of structural specificity using this approach.

  20. Analytical techniques for the study of polyphenol-protein interactions.

    Science.gov (United States)

    Poklar Ulrih, Nataša

    2017-07-03

    This mini review focuses on advances in biophysical techniques to study polyphenol interactions with proteins. Polyphenols have many beneficial pharmacological properties, as a result of which they have been the subject of intensive studies. The most conventional techniques described here can be divided into three groups: (i) methods used for screening (in-situ methods); (ii) methods used to gain insight into the mechanisms of polyphenol-protein interactions; and (iii) methods used to study protein aggregation and precipitation. All of these methods used to study polyphenol-protein interactions are based on modifications to the physicochemical properties of the polyphenols or proteins after binding/complex formation in solution. To date, numerous review articles have been published in the field of polyphenols. This review will give a brief insight in computational methods and biosensors and cell-based methods, spectroscopic methods including fluorescence emission, UV-vis adsorption, circular dichroism, Fourier transform infrared and mass spectrometry, nuclear magnetic resonance, X-ray diffraction, and light scattering techniques including small-angle X-ray scattering and small-angle neutron scattering, and calorimetric techniques (isothermal titration calorimetry and differential scanning calorimetry), microscopy, the techniques which have been successfully used for polyphenol-protein interactions. At the end the new methods based on single molecule detection with high potential to study polyphenol-protein interactions will be presented. The advantages and disadvantages of each technique will be discussed as well as the thermodynamic, kinetic or structural parameters, which can be obtained. The other relevant biophysical experimental techniques that have proven to be valuable, such electrochemical methods, hydrodynamic techniques and chromatographic techniques will not be described here.

  1. Intake of total protein, plant protein and animal protein in relation to blood pressure : a meta-analysis of observational and intervention studies

    NARCIS (Netherlands)

    Tielemans, S. M. A. J.; Altorf-van der Kuil, W.; Engberink, M. F.; Brink, E. J.; van Baak, M. A.; Bakker, S. J. L.; Geleijnse, J. M.

    There is growing evidence from epidemiological studies that dietary protein may beneficially influence blood pressure (BP), but findings are inconclusive. We performed a meta-analysis of 29 observational studies and randomized controlled trials (RCTs) of dietary protein and types of protein in

  2. Intake of total protein, plant protein and animal protein in relation to blood pressure: a meta-analysis of observatinoal and intervention studies

    NARCIS (Netherlands)

    Tielemans, S.M.A.J.; Altorf-van der Kuil, W.; Engberink, M.F.; Brink, E.J.; Baak, van M.A.; Bakker, S.J.; Geleijnse, J.M.

    2013-01-01

    There is growing evidence from epidemiological studies that dietary protein may beneficially influence blood pressure (BP), but findings are inconclusive. We performed a meta-analysis of 29 observational studies and randomized controlled trials (RCTs) of dietary protein and types of protein in

  3. Impact of Indoor Use of Wood on the Quality of Interior Ambiances under Overcast and Clear Skies: Case Study of the Eugene H. Kruger Building, Québec City

    Directory of Open Access Journals (Sweden)

    Hoda Jafarian

    2016-01-01

    Full Text Available This paper explores the potential of wood for improving environmental quality in interior spaces. In northern climate cities where overcast skies predominate, interior spaces may appear gloomy or dull, since natural light is white and uniform. Nevertheless it is observed that wooden surfaces tend to create warmer and brighter spaces under overcast sky conditions. The objectives of this research were twofold. The first was evaluating the quality of wooden spaces under two sky conditions in terms of color, brightness and contrast. The second objective was to investigate daylight quantity of wooden spaces under diffuse and clear sky conditions. The method involved on site-surveys using Photolux, a calibrated photoluminance meter. Data consist of calibrated digital images that were processed to analyze the quality of spaces based on brightness, contrast, and color. The Kruger Building, with its internal wooden architectural structure and decorative indoor panels, was chosen as a site study for this research. Conclusions suggest that knowing the effect of different sky conditions on wooden spaces can help architects and other professionals in designing more comfortable and efficient ambiances. More particularly, this research addresses issues related to the quantitative effects of wood on daylighting distribution, visual comfort and luminance diversity.

  4. Lipid nanotechnologies for structural studies of membrane-associated proteins.

    Science.gov (United States)

    Stoilova-McPhie, Svetla; Grushin, Kirill; Dalm, Daniela; Miller, Jaimy

    2014-11-01

    We present a methodology of lipid nanotubes (LNT) and nanodisks technologies optimized in our laboratory for structural studies of membrane-associated proteins at close to physiological conditions. The application of these lipid nanotechnologies for structure determination by cryo-electron microscopy (cryo-EM) is fundamental for understanding and modulating their function. The LNTs in our studies are single bilayer galactosylceramide based nanotubes of ∼20 nm inner diameter and a few microns in length, that self-assemble in aqueous solutions. The lipid nanodisks (NDs) are self-assembled discoid lipid bilayers of ∼10 nm diameter, which are stabilized in aqueous solutions by a belt of amphipathic helical scaffold proteins. By combining LNT and ND technologies, we can examine structurally how the membrane curvature and lipid composition modulates the function of the membrane-associated proteins. As proof of principle, we have engineered these lipid nanotechnologies to mimic the activated platelet's phosphtaidylserine rich membrane and have successfully assembled functional membrane-bound coagulation factor VIII in vitro for structure determination by cryo-EM. The macromolecular organization of the proteins bound to ND and LNT are further defined by fitting the known atomic structures within the calculated three-dimensional maps. The combination of LNT and ND technologies offers a means to control the design and assembly of a wide range of functional membrane-associated proteins and complexes for structural studies by cryo-EM. The presented results confirm the suitability of the developed methodology for studying the functional structure of membrane-associated proteins, such as the coagulation factors, at a close to physiological environment. © 2014 Wiley Periodicals, Inc.

  5. Structural basis of protein oxidation resistance: a lysozyme study.

    Directory of Open Access Journals (Sweden)

    Marion Girod

    Full Text Available Accumulation of oxidative damage in proteins correlates with aging since it can cause irreversible and progressive degeneration of almost all cellular functions. Apparently, native protein structures have evolved intrinsic resistance to oxidation since perfectly folded proteins are, by large most robust. Here we explore the structural basis of protein resistance to radiation-induced oxidation using chicken egg white lysozyme in the native and misfolded form. We study the differential resistance to oxidative damage of six different parts of native and misfolded lysozyme by a targeted tandem/mass spectrometry approach of its tryptic fragments. The decay of the amount of each lysozyme fragment with increasing radiation dose is found to be a two steps process, characterized by a double exponential evolution of their amounts: the first one can be largely attributed to oxidation of specific amino acids, while the second one corresponds to further degradation of the protein. By correlating these results to the structural parameters computed from molecular dynamics (MD simulations, we find the protein parts with increased root-mean-square deviation (RMSD to be more susceptible to modifications. In addition, involvement of amino acid side-chains in hydrogen bonds has a protective effect against oxidation Increased exposure to solvent of individual amino acid side chains correlates with high susceptibility to oxidative and other modifications like side chain fragmentation. Generally, while none of the structural parameters alone can account for the fate of peptides during radiation, together they provide an insight into the relationship between protein structure and susceptibility to oxidation.

  6. Utilizing Mechanistic Cross-Linking Technology to Study Protein-Protein Interactions: An Experiment Designed for an Undergraduate Biochemistry Lab

    Science.gov (United States)

    Finzel, Kara; Beld, Joris; Burkart, Michael D.; Charkoudian, Louise K.

    2017-01-01

    Over the past decade, mechanistic cross-linking probes have been used to study protein-protein interactions in natural product biosynthetic pathways. This approach is highly interdisciplinary, combining elements of protein biochemistry, organic chemistry, and computational docking. Herein, we described the development of an experiment to engage…

  7. Radioisotope techniques in the study of protein metabolism

    International Nuclear Information System (INIS)

    1965-01-01

    The International Atomic Energy Agency (IAEA) held a panel meeting on June 1-5, 1964. The purpose of the panel was to discuss the present status of radioactive tracer techniques for the study of protein metabolism and to suggest ways of extending an co-ordinating the Agency's research programme in this field. The meeting was attended by 13 invited experts from ten different countries, and three representatives of the World Health Organization (WHO). Sessions of the panel were devoted to methods of preparation of labelled proteins and protein-like substances, to techniques of measurement of gastro-intestinal protein absorption and loss and to the clinical applications of these techniques. At each session, working papers were presented by various participants and then discussed in detail. This report gives the full texts of the working papers together with extensive summaries of the discussions and provides a detailed picture of the present situation and likely future developments in this field of work. It is hoped that its publication will be of interest to all concerned with problems of protein metabolism, whether in clinical medicine or the basic medical sciences. 349 refs, figs and tabs

  8. Study of the proteins in the defatted flour and protein concentrate of baru nuts (Dipteryx alata Vog

    Directory of Open Access Journals (Sweden)

    Rita de Cássia Avellaneda Guimarães

    2012-09-01

    Full Text Available Baru (Dipteryx alata Vog. is an abundant legume in the Brazilian Savanna. Its nuts can be exploited sustainably using its protein and lipid fractions. This study aimed to analyze the proteins of the nuts present in the defatted flour and protein concentrate in terms of their functional properties, the profile of their fractions, and the in vitro digestibility. The flour was defatted with hexane and extracted at the pH of higher protein solubility to obtain the protein concentrate. The electrophoretic profile of the protein fractions was evaluated in SDS-PAGE gel. The functional properties of the proteins indicate the possibility of their use in various foods, like soybeans providing water absorption capacity, oil absorption capacity, emulsifying properties, and foamability. Globulins, followed by the albumins, are the major fractions of the flour and protein concentrate, respectively. Digestibility was greater for the concentrate than for the defatted flour.

  9. Young Children's Color Preferences in the Interior Environment

    Science.gov (United States)

    Read, Marilyn A.; Upington, Deborah

    2009-01-01

    This study focuses on children's color preferences in the interior environment. Previous studies highlight young children's preferences for the colors red and blue. The methods of this study used a rank ordering technique and a semi-structured interview process with 3-, 4-, and 5-year-old children. Findings reveal that children prefer the color…

  10. Interior design of the lunar outpost

    Science.gov (United States)

    Kennedy, Kriss J.

    1990-01-01

    This paper is part of an ongoing study on the interior design of a lunar outpost habitat facility. The concept presented represents the work done up to and including August 1989. This concept is part of NASA's ongoing effort to explore alternative options for planet surface systems habitation. Results of a volume analog study to determine the required pressurized volume are presented along with an internal layout of the habitat facility. The concept presented in this paper is a constructible lunar habitat that provides a living and working environment for a crew of 12. It is a 16-m diameter spherical pneumatic structure which contains 2145 cubic meters of volume. Five levels of living and working areas make up the 742 sq m of floor space. A 2-m vertical circulation shaft at the center allows for transfer of crew and equipment.

  11. Surface and interior of Venus

    Energy Technology Data Exchange (ETDEWEB)

    Masursky, H [U.S. Geological Survey, Flagstaff, Arizona, USA; Kaula, W M [California Univ., Los Angeles (USA); McGill, G E [Massachusetts Univ., Amherst (USA); Pettengill, G H; Shapiro, I I [Massachusetts Inst. of Tech., Cambridge (USA). Dept. of Earth and Planetary Sciences; Phillips, R J [Jet Propulsion Lab., Pasadena, Calif. (USA); Russell, C T [California Univ., Los Angeles (USA). Inst. of Geophysics and Planetary Physics; Schubert, G [California Univ., Los Angeles (USA)

    1977-06-01

    Present ideas about the surface and interior of Venus are based on data obtained from (1) Earth-based radio and radar: temperature, rotation, shape, and topography; (2) fly-by and orbiting spacecraft: gravity and magnetic fields; and (3) landers: winds, local structure, gamma radiation. Surface features, including large basins, crater-like depressions, and a linear valley, have been recognized from recent ground-based radar images. Pictures of the surface acquired by the USSR's Venera 9 and 10 show abundant boulders and apparent wind erosion. On the Pioneer Venus 1978 Orbiter mission, the radar mapper experiment will determine surface heights, dielectric constant values and small-scale slope values along the sub-orbital track between 50/sup 0/S and 75/sup 0/N. This experiment will also estimate the global shape and provide coarse radar images (40-80 km identification resolution) of part of the surface. Gravity data will be obtained by radio tracking. Maps combining radar altimetry with spacecraft and ground-based images will be made. A fluxgate magnetometer will measure the magnetic fields around Venus. The radar and gravity data will provide clues to the level of crustal differentiation and tectonic activity. The magnetometer will determine the field variations accurately. Data from the combined experiments may constrain the dynamo mechanism; if so, a deeper understanding of both Venus and Earth will be gained.

  12. Interior operators and topological connectedness | Castellini ...

    African Journals Online (AJOL)

    A categorical notion of interior operator is used in topology to define connectedness and disconnectedness with respect to an interior operator. A commutative diagram of Galois connections is used to show a relationship between these notions and Arhangelskii and Wiegandt's notions of connectedness and ...

  13. Black Hole Interior in Quantum Gravity.

    Science.gov (United States)

    Nomura, Yasunori; Sanches, Fabio; Weinberg, Sean J

    2015-05-22

    We discuss the interior of a black hole in quantum gravity, in which black holes form and evaporate unitarily. The interior spacetime appears in the sense of complementarity because of special features revealed by the microscopic degrees of freedom when viewed from a semiclassical standpoint. The relation between quantum mechanics and the equivalence principle is subtle, but they are still consistent.

  14. Um estudo sobre a utilização de sistemas, programas e ferramentas da qualidade em empresas do interior de São Paulo A study on the use of quality systems, programs and tools in companies of interior of São Paulo State

    Directory of Open Access Journals (Sweden)

    José Augusto de Oliveira

    2011-01-01

    Full Text Available O desenvolvimento e implantação de sistemas de gestão da qualidade e o uso de programas e ferramentas da qualidade são algumas das opções mais utilizadas pelos gestores para aumentar a competitividade de suas empresas. Nesse contexto, o objetivo deste artigo é apresentar o resultado de uma pesquisa tipo survey em que se verificaram e analisaram as principais características do processo de certificação ISO 9001, seus benefícios, suas dificuldades e quais programas e ferramentas da qualidade são utilizados em 236 empresas do interior do Estado de São Paulo. A pesquisa revelou que a certificação ISO 9001 gera benefícios significativos às organizações, tais como: melhoria dos processos internos e nos seus produtos; aumento da satisfação dos clientes; diminuição do número de não conformidades e de devoluções; aumento da produtividade e do lucro; melhoria no gerenciamento dos recursos e valorização da imagem da empresa no mercado. Ela também ratificou a importância da utilização dos programas e ferramentas da qualidade como forma de as empresas se adequarem melhor aos requisitos da norma ISO 9001. As dificuldades de desenvolvimento e implantação desses sistemas não se confirmaram para a amostra pesquisada. Apenas a resistência à mudança, dentre todas apresentadas, mereceu destaque para os pesquisados.The development and implementation of quality management systems and the use of quality tools and programs are some of the most widely used options by managers to increase the competitiveness of their companies. Thus, the goal of this paper is to present the result of a research type survey which analyzed the main characteristics of the ISO 9001 certification process, its benefits and difficulties and which quality programs and tools are used in 236 company headquartered in the interior of São Paulo State. The survey showed that the ISO 9001 certification generates significant benefits to organizations, such as

  15. Sequence- and interactome-based prediction of viral protein hotspots targeting host proteins: a case study for HIV Nef.

    Directory of Open Access Journals (Sweden)

    Mahdi Sarmady

    Full Text Available Virus proteins alter protein pathways of the host toward the synthesis of viral particles by breaking and making edges via binding to host proteins. In this study, we developed a computational approach to predict viral sequence hotspots for binding to host proteins based on sequences of viral and host proteins and literature-curated virus-host protein interactome data. We use a motif discovery algorithm repeatedly on collections of sequences of viral proteins and immediate binding partners of their host targets and choose only those motifs that are conserved on viral sequences and highly statistically enriched among binding partners of virus protein targeted host proteins. Our results match experimental data on binding sites of Nef to host proteins such as MAPK1, VAV1, LCK, HCK, HLA-A, CD4, FYN, and GNB2L1 with high statistical significance but is a poor predictor of Nef binding sites on highly flexible, hoop-like regions. Predicted hotspots recapture CD8 cell epitopes of HIV Nef highlighting their importance in modulating virus-host interactions. Host proteins potentially targeted or outcompeted by Nef appear crowding the T cell receptor, natural killer cell mediated cytotoxicity, and neurotrophin signaling pathways. Scanning of HIV Nef motifs on multiple alignments of hepatitis C protein NS5A produces results consistent with literature, indicating the potential value of the hotspot discovery in advancing our understanding of virus-host crosstalk.

  16. Injury, Interiority, and Isolation in Men's Suicidality.

    Science.gov (United States)

    Oliffe, John L; Creighton, Genevieve; Robertson, Steve; Broom, Alex; Jenkins, Emily K; Ogrodniczuk, John S; Ferlatte, Olivier

    2017-07-01

    Men's high suicide rates have been linked to individual risk factors including history of being abused as a child, single marital status, and financial difficulties. While it has also been suggested that the normative influences of hegemonic masculinities are implicated in men's suicide, the gendered experiences of male suicidality are poorly understood. In the current photovoice study, 20 men who previously had suicidal thoughts, plans, and/or attempts were interviewed as a means to better understanding the connections between masculinities and their experiences of suicidality. The study findings revealed injury, interiority, and isolation as interconnected themes characterizing men's suicidality. Injury comprised an array of childhood and/or cumulative traumas that fueled men's ruminating thoughts inhibiting recovery and limiting hopes for improved life quality. In attempting to blunt these traumas, many men described self-injuring through the overuse of alcohol and other drugs. The interiority theme revealed how suicidal thoughts can fuel hopelessness amid summonsing remedies from within. The challenges to self-manage, especially when experiencing muddled thinking and negative thought were evident, and led some participants to summons exterior resources to counter suicidality. Isolation included separateness from others, and was linked to abandonment issues and not having a job and/or partner. Self-isolating also featured as a protection strategy to avoid troubling others and/or reducing exposure to additional noxious stimuli. The study findings suggest multiple intervention points and strategies, the majority of which are premised on promoting men's social connectedness. The destigmatizing value of photovoice methods is also discussed.

  17. Studying protein assembly with reversible Brownian dynamics of patchy particles

    International Nuclear Information System (INIS)

    Klein, Heinrich C. R.; Schwarz, Ulrich S.

    2014-01-01

    Assembly of protein complexes like virus shells, the centriole, the nuclear pore complex, or the actin cytoskeleton is strongly determined by their spatial structure. Moreover, it is becoming increasingly clear that the reversible nature of protein assembly is also an essential element for their biological function. Here we introduce a computational approach for the Brownian dynamics of patchy particles with anisotropic assemblies and fully reversible reactions. Different particles stochastically associate and dissociate with microscopic reaction rates depending on their relative spatial positions. The translational and rotational diffusive properties of all protein complexes are evaluated on-the-fly. Because we focus on reversible assembly, we introduce a scheme which ensures detailed balance for patchy particles. We then show how the macroscopic rates follow from the microscopic ones. As an instructive example, we study the assembly of a pentameric ring structure, for which we find excellent agreement between simulation results and a macroscopic kinetic description without any adjustable parameters. This demonstrates that our approach correctly accounts for both the diffusive and reactive processes involved in protein assembly

  18. Studying protein assembly with reversible Brownian dynamics of patchy particles

    Energy Technology Data Exchange (ETDEWEB)

    Klein, Heinrich C. R. [Institute for Theoretical Physics, Heidelberg University, 69120 Heidelberg (Germany); Schwarz, Ulrich S., E-mail: ulrich.schwarz@bioquant.uni-heidelberg.de [Institute for Theoretical Physics, Heidelberg University, 69120 Heidelberg (Germany); BioQuant, Heidelberg University, 69120 Heidelberg (Germany)

    2014-05-14

    Assembly of protein complexes like virus shells, the centriole, the nuclear pore complex, or the actin cytoskeleton is strongly determined by their spatial structure. Moreover, it is becoming increasingly clear that the reversible nature of protein assembly is also an essential element for their biological function. Here we introduce a computational approach for the Brownian dynamics of patchy particles with anisotropic assemblies and fully reversible reactions. Different particles stochastically associate and dissociate with microscopic reaction rates depending on their relative spatial positions. The translational and rotational diffusive properties of all protein complexes are evaluated on-the-fly. Because we focus on reversible assembly, we introduce a scheme which ensures detailed balance for patchy particles. We then show how the macroscopic rates follow from the microscopic ones. As an instructive example, we study the assembly of a pentameric ring structure, for which we find excellent agreement between simulation results and a macroscopic kinetic description without any adjustable parameters. This demonstrates that our approach correctly accounts for both the diffusive and reactive processes involved in protein assembly.

  19. Predicting the binding patterns of hub proteins: a study using yeast protein interaction networks.

    Directory of Open Access Journals (Sweden)

    Carson M Andorf

    Full Text Available Protein-protein interactions are critical to elucidating the role played by individual proteins in important biological pathways. Of particular interest are hub proteins that can interact with large numbers of partners and often play essential roles in cellular control. Depending on the number of binding sites, protein hubs can be classified at a structural level as singlish-interface hubs (SIH with one or two binding sites, or multiple-interface hubs (MIH with three or more binding sites. In terms of kinetics, hub proteins can be classified as date hubs (i.e., interact with different partners at different times or locations or party hubs (i.e., simultaneously interact with multiple partners.Our approach works in 3 phases: Phase I classifies if a protein is likely to bind with another protein. Phase II determines if a protein-binding (PB protein is a hub. Phase III classifies PB proteins as singlish-interface versus multiple-interface hubs and date versus party hubs. At each stage, we use sequence-based predictors trained using several standard machine learning techniques.Our method is able to predict whether a protein is a protein-binding protein with an accuracy of 94% and a correlation coefficient of 0.87; identify hubs from non-hubs with 100% accuracy for 30% of the data; distinguish date hubs/party hubs with 69% accuracy and area under ROC curve of 0.68; and SIH/MIH with 89% accuracy and area under ROC curve of 0.84. Because our method is based on sequence information alone, it can be used even in settings where reliable protein-protein interaction data or structures of protein-protein complexes are unavailable to obtain useful insights into the functional and evolutionary characteristics of proteins and their interactions.We provide a web server for our three-phase approach: http://hybsvm.gdcb.iastate.edu.

  20. Insectivorous Birds and Environmental Factors Across an Edge-Interior Gradient in Tropical Rainforest of Malaysia

    OpenAIRE

    Abdullah B. Mohd; Mohamed Zakaria; Hossein Varasteh Moradi; Ebil Yusof

    2009-01-01

    The study objectives were to test: (1) the effects of the edge-interior gradient on understorey insectivorous bird abundance, density and diversity; (2) effects of environmental variables along an edge-interior gradient at population level (i.e., on each sub-guilds and species abundance); (3) possible effects of environmental structure along an edge-interior gradient at community level (i.e., species richness, diversity and total abundance). Fifteen hundred and four birds belonging to ...

  1. Exploring the Effectiveness of Blended Learning in Interior Design Education

    Science.gov (United States)

    Afacan, Yasemin

    2016-01-01

    This study explores how blended learning can contribute to interior design students' learning outcomes, their engagement with non-studio courses and affect their learning achievements. Within the framework of the study, a blended learning experience was carried out in "IAED 342 Building Performance" module at Bilkent University, Turkey.…

  2. Planetary Interior Modeling and Tectonic Implications

    Science.gov (United States)

    Phillips, R. J.

    1985-01-01

    A technique is described for estimating spectral admittance functions using Pioneer Venus gravity and topography data. These admittance functions provide a convenient means to carry out systematic geophysical studies over much of the surface of Venus with a variety of interior density models. The admittance functions are calculated in the observation space of line-of-sight (LOS) gravity. Both closed and open system petrological models are considered for the Tharsis region of Mars. An analytic theory for isostatic compensation on one-plate planet is applied, including membrane stresses in the lithosphere, self gravitation, and rotational ellipticity. Crucial to this stress modeling and also to the petrological modeling is the observation that the earliest fracturing seen in the Tharsis region is associated with isostatic stresses. The radial fractures that extend far from Tharsis are associated with an additional and/or a completely different mechanism.

  3. The Neutron Star Interior Composition Explorer (NICER)

    Science.gov (United States)

    Wilson-Hodge, Colleen A.; Gendreau, K.; Arzoumanian, Z.

    2014-01-01

    The Neutron Star Interior Composition Explorer (NICER) is an approved NASA Explorer Mission of Opportunity dedicated to the study of the extraordinary gravitational, electromagnetic, and nuclear-physics environments embodied by neutron stars. Scheduled to be launched in 2016 as an International Space Station payload, NICER will explore the exotic states of matter, using rotation-resolved spectroscopy of the thermal and non-thermal emissions of neutron stars in the soft (0.2-12 keV) X-ray band. Grazing-incidence "concentrator" optics coupled with silicon drift detectors, actively pointed for a full hemisphere of sky coverage, will provide photon-counting spectroscopy and timing registered to GPS time and position, with high throughput and relatively low background. The NICER project plans to implement a Guest Observer Program, which includes competitively selected user targets after the first year of flight operations. I will describe NICER and discuss ideas for potential Be/X-ray binary science.

  4. Simulation studies of protein-induced bilayer deformations, and lipid-induced protein tilting, on a mesoscopic model for lipid bilayers with embedded proteins

    DEFF Research Database (Denmark)

    Venturoli, M.; Smit, B.; Sperotto, Maria Maddalena

    2005-01-01

    membranes. Here we present a mesoscopic model for lipid bilayers with embedded proteins, which we have studied with the help of the dissipative particle dynamics simulation technique. Because hydrophobic matching is believed to be one of the main physical mechanisms regulating lipid-protein interactions......-induced protein tilt, with the hydrophobic mismatch ( positive and negative) between the protein hydrophobic length and the pure lipid bilayer hydrophobic thickness. The protein-induced bilayer perturbation was quantified in terms of a coherence length, xi(P), of the lipid bilayer hydrophobic thickness pro. le...... for positive values of mismatch; a dependence on the protein size appears as well. In the case of large model proteins experiencing extreme mismatch conditions, in the region next to the so-called lipid annulus, there appears an undershooting ( or overshooting) region where the bilayer hydrophobic thickness...

  5. [Study of beta-turns in globular proteins].

    Science.gov (United States)

    Amirova, S R; Milchevskiĭ, Iu V; Filatov, I V; Esipova, N G; Tumanian, V G

    2005-01-01

    The formation of beta-turns in globular proteins has been studied by the method of molecular mechanics. Statistical method of discriminant analysis was applied to calculate energy components and sequences of oligopeptide segments, and after this prediction of I type beta-turns has been drawn. The accuracy of true positive prediction is 65%. Components of conformational energy considerably affecting beta-turn formation were delineated. There are torsional energy, energy of hydrogen bonds, and van der Waals energy.

  6. Energetics of hydrogen bonding in proteins: a model compound study.

    OpenAIRE

    Habermann, S. M.; Murphy, K. P.

    1996-01-01

    Differences in the energetics of amide-amide and amide-hydroxyl hydrogen bonds in proteins have been explored from the effect of hydroxyl groups on the structure and dissolution energetics of a series of crystalline cyclic dipeptides. The calorimetrically determined energetics are interpreted in light of the crystal structures of the studied compounds. Our results indicate that the amide-amide and amide-hydroxyl hydrogen bonds both provide considerable enthalpic stability, but that the amide-...

  7. Green Fluorescent Protein as a Model for Protein Crystal Growth Studies

    Science.gov (United States)

    Agena, Sabine; Smith, Lori; Karr, Laurel; Pusey, Marc

    1998-01-01

    Green fluorescent protein (GFP) from jellyfish Aequorea Victoria has become a popular marker for e.g. mutagenesis work. Its fluorescent property, which originates from a chromophore located in the center of the molecule, makes it widely applicable as a research too]. GFP clones have been produced with a variety of spectral properties, such as blue and yellow emitting species. The protein is a single chain of molecular weight 27 kDa and its structure has been determined at 1.9 Angstrom resolution. The combination of GFP's fluorescent property, the knowledge of its several crystallization conditions, and its increasing use in biophysical and biochemical studies, all led us to consider it as a model material for macromolecular crystal growth studies. Initial preparations of GFP were from E.coli with yields of approximately 5 mg/L of culture media. Current yields are now in the 50 - 120 mg/L range, and we hope to further increase this by expression of the GFP gene in the Pichia system. The results of these efforts and of preliminary crystal growth studies will be presented.

  8. Environmental constraints in the study of flexible segments of proteins

    Energy Technology Data Exchange (ETDEWEB)

    D' Ursi, Annamaria; Albrizio, Stefania; Tancredi, Teodorico; Temussi, Piero A

    1998-05-15

    The structural problem posed by ill-defined segments in protein structures is similar to those encountered in the study of most peptide hormones, with terminal tracts resembling linear peptides and loops resembling cyclic peptides. The conformational preferences of short linear peptides in solution can be influenced by the use of solvent mixtures of viscosity higher than that of pure water but comparable to that of cytoplasm. In order to check whether it is possible to use these media in the structural study of proteins, we undertook an exploratory study on BPTI in a mixture of dimethylsulfoxide and water. The complete assignment of BPTI in an 80:20 (by volume) DMSO-d{sub 6}/water cryomixture at two temperatures showed that all resonances parallel those in water, hinting at the persistence of the correct protein architecture, which is also confirmed by NOESY experiments. In addition to the NOEs present in the aqueous solution it was possible to detect numerous new cross peaks, in particular from residues belonging to the less-defined regions. The new cross peaks do not originate from spin diffusion and are consistent with the best NMR structure and with the X-ray structures of BPTI.

  9. Protein folding on the ribosome studied using NMR spectroscopy

    Science.gov (United States)

    Waudby, Christopher A.; Launay, Hélène; Cabrita, Lisa D.; Christodoulou, John

    2013-01-01

    NMR spectroscopy is a powerful tool for the investigation of protein folding and misfolding, providing a characterization of molecular structure, dynamics and exchange processes, across a very wide range of timescales and with near atomic resolution. In recent years NMR methods have also been developed to study protein folding as it might occur within the cell, in a de novo manner, by observing the folding of nascent polypeptides in the process of emerging from the ribosome during synthesis. Despite the 2.3 MDa molecular weight of the bacterial 70S ribosome, many nascent polypeptides, and some ribosomal proteins, have sufficient local flexibility that sharp resonances may be observed in solution-state NMR spectra. In providing information on dynamic regions of the structure, NMR spectroscopy is therefore highly complementary to alternative methods such as X-ray crystallography and cryo-electron microscopy, which have successfully characterized the rigid core of the ribosome particle. However, the low working concentrations and limited sample stability associated with ribosome–nascent chain complexes means that such studies still present significant technical challenges to the NMR spectroscopist. This review will discuss the progress that has been made in this area, surveying all NMR studies that have been published to date, and with a particular focus on strategies for improving experimental sensitivity. PMID:24083462

  10. STUDY OF ANEMIA AMONG PROTEIN ENERGY MALNOURISHED CHILDREN IN MYSORE

    Directory of Open Access Journals (Sweden)

    Nayana

    2015-02-01

    Full Text Available INTRODUCTION AND OBJECTIVES : Anemia in Protein energy malnutrition (PEM is common and its pathogenesis is multifactorial. Since the clinico - pathological patterns are reflected by their underlying etiopathogenic factors, it is important to study the associated morbidity and mortalit y and to establish their causes for an effective management. The purpose of the present study is to determine the prevalence, patterns, clinico - pathological and morphological types of anemia in protein energy malnutrition children. The objectives of the st udy are: (1 To study the clinico - pathological and morphological patterns of anemia in PEM children of age group 6 month – 5 years. (2 To assess the resultant morbidity and mortality. (3 To determine the ideal parameter for iron deficiency anemia. METHOD S: This study was conducted on 75 clinically diagnosed Protein energy malnutrition patients of age group 6 months to 5 years. Detailed clinical history elicitation and thorough clinical examination was performed. Peripheral smears of these patients were ex amined. The complete hemogram including reticulocyte count was done. The special investigations like bone marrow study, Hb electrophoresis, iron studies and stool examination were done whenever required. RESULTS: In our study, anemia in PEM affected female population more than the males of age 36 - 47 months. Most of children had Grade III PEM and Microcytic hypochromic anemia was most prevalent. Most of the children had Iron deficiency anemia. This study also indicated that Serum iron assay and TIBC are the better indicators of iron deficiency anemia in patients with PEM and it is the investigation of choice when compared to serum ferritin as it gets falsely elevated in these patients with infections confirmed by elevated CRP level. INTERPRETATION AND CONCLUS ION: Malnutrition, Infection and Anemia show a synergistic relationship. So it necessitates prompt screening and early diagnosis through proper

  11. Interior Design Based on Forough Farrokhzad Poetry

    Directory of Open Access Journals (Sweden)

    Mahsa Sanami

    2018-03-01

    Full Text Available The main purpose of this study is to correlate between art, literature, architect and visualization to translate the emotions and aspirations embodied in a well-known poet such as Forough Farrokhzad. Forough Farrokhzad widely regarded as a famous Iranian poet and an advocate for women’s liberation and independence. She wrote during a time when Iranian women were facing extensive discrimination and prejudice. Many of her works are rich in feminist related aspects of Iranian women. By visualization of Forough’s inner feelings, one can see a great revaluation in society towards women feelings and emotions. Like any other human, poets and artist both have thoughts and dreams rich in colors and words capsulizing their imaginary world in possible dreams which are all related to each person’s personality, culture, environment and etc. One of the ways to understand a poet is to understand the depth of his/her thoughts through his/her poems. Thus the main purpose of this research is to review interior design based on in depth analysis of related poems. Psychoanalysis of symbols, themes and colors used in poems, can be used to supplement words in extracting symptoms and energy depicting the poet inner feelings and imaginations when designing. The results of the discussing symbols and colors used by Forough in most of her poems, indicate her interest in life, death, love, society, intellectuality and philosophy. Finally the researchers through usage of visual effects and pictures used in her designs tries to assist the viewers to understand and feel the poet’s emotions and passions for life at the time of creating the poems. Thus, it can be assumed that the interior design is based on poetry rich in motion and dynamism.

  12. Construction of a biodynamic model for Cry protein production studies.

    Science.gov (United States)

    Navarro-Mtz, Ana Karin; Pérez-Guevara, Fermín

    2014-12-01

    Mathematical models have been used from growth kinetic simulation to gen regulatory networks prediction for B. thuringiensis culture. However, this culture is a time dependent dynamic process where cells physiology suffers several changes depending on the changes in the cell environment. Therefore, through its culture, B. thuringiensis presents three phases related with the predominance of three major metabolic pathways: vegetative growth (Embded-Meyerhof-Parnas pathway), transition (γ-aminobutiric cycle) and sporulation (tricarboxylic acid cycle). There is not available a mathematical model that relates the different stages of cultivation with the metabolic pathway active on each one of them. Therefore, in the present study, and based on published data, a biodynamic model was generated to describe the dynamic of the three different phases based on their major metabolic pathways. The biodynamic model is used to study the interrelation between the different culture phases and their relationship with the Cry protein production. The model consists of three interconnected modules where each module represents one culture phase and its principal metabolic pathway. For model validation four new fermentations were done showing that the model constructed describes reasonably well the dynamic of the three phases. The main results of this model imply that poly-β-hydroxybutyrate is crucial for endospore and Cry protein production. According to the yields of dipicolinic acid and Cry from poly-β-hydroxybutyrate, calculated with the model, the endospore and Cry protein production are not just simultaneous and parallel processes they are also competitive processes.

  13. Study of the interactions between naphthoquinone and protein

    International Nuclear Information System (INIS)

    Zhang Zhaoxia; Zhao Hongwei; Zhu Hongping; Ge Min; Hao Shumei; Wang Wenfeng; Li Wenxin

    2006-01-01

    Quinones are found in probably all respiring animal and plant cells. They are widely used as anticancer, antibacterial or antimalarial drugs and as fungicides. Over the last several decades, much attention has been paid to quinone compounds since they play important roles as electron and hydrogen atom acceptors in both chemistry and biochemistry. It has been known that the reactive states for the photoreduction of quinones are triplets. As for the photochemistry of simple quinones, such as benzoquinones (BQ), anthraquinones (AQ) and naphthoquinone (NQ), a large number of studies on their photochemical properties and elementary photoreactions. However little research on the protein electron transfer of triplet naphthoquinones ( 3 NQ * ) in organic solvents has been reported using laser flash photolysis. We have studied interactions between 3 NQ * and lysozyme in a mixture solution of acetonitrile and H 2 O (3:1, v/v) using 355 nm laser flash photolysis technique combined with the sample being irradiated in steady-state. Electron transfer reaction between 3 NQ * and lysozyme was found, and the rate constant was determined. On the other hand, the results of electrophoresis suggested that protein can be damaged induced by NQ irradiated with UVA light. It was indicated that the mechanisms and products of oxidative damage were relative to the concentration of riboflavin, the time of irradiation and the ambience. Mechanisms of photosensitive damage of protein were proposed. (authors)

  14. Substrate-Bound Protein Gradients to Study Haptotaxis

    Directory of Open Access Journals (Sweden)

    Sebastien G. Ricoult

    2015-03-01

    Full Text Available Cells navigate in response to inhomogeneous distributions of extracellular guidance cues. The cellular and molecular mechanisms underlying migration in response to gradients of chemical cues have been investigated for over a century. Following the introduction of micropipettes and more recently microfluidics for gradient generation, much attention and effort was devoted to study cellular chemotaxis, which is defined as guidance by gradients of chemical cues in solution. Haptotaxis, directional migration in response to gradients of substrate-bound cues, has received comparatively less attention; however it is increasingly clear that in vivo many physiologically relevant guidance proteins – including many secreted cues – are bound to cellular surfaces or incorporated into extracellular matrix and likely function via a haptotactic mechanism. Here, we review the history of haptotaxis. We examine the importance of the reference surface, the surface in contact with the cell that is not covered by the cue, which forms a gradient opposing the gradient of the protein cue and must be considered in experimental designs and interpretation of results. We review and compare microfluidics, contact-printing, light patterning and 3D fabrication to pattern substrate-bound protein gradients in vitro, and focus on their application to study axon guidance. The range of methods to create substrate-bound gradients discussed herein make possible systematic analyses of haptotactic mechanisms. Furthermore, understanding the fundamental mechanisms underlying cell motility will inform bioengineering approaches to program cell navigation and recover lost function.

  15. Moessbauer spectroscopic studies of iron-storage proteins

    Energy Technology Data Exchange (ETDEWEB)

    St. Pierre, T.G.

    1986-01-01

    /sup 57/Fe Moessbauer spectroscopy was used to study iron storage proteins. Various cryostats and a superconducting magnet were used to obtain sample environment temperatures from 1.3 to 200K and applied magnetic fields of up to 10T. The Moessbauer spectra of ferritins isolated from iron-overloaded human spleen, limpet (Patella vulgata), giant limpet (Patella laticostata) and chiton (Clavarizona hirtosa) hemolymph, and bacterial (Pseudomonas aeruginosa) cells are used to gain information on the magnetic ordering- and superparamagnetic transition temperatures of the microcrystalline cores of the proteins. Investigations were made about the cause of the difference in the magnetic anisotropy constants of the cores of iron-overloaded human spleen ferritin and hemosiderin. Livers taken from an iron-overloaded hornbill and artificially iron-loaded rats showed no component with a superparamagnetic transition temperature approaching that of the human spleen hemosiderin.

  16. Systematic study of plasma and serum proteins in the pig

    International Nuclear Information System (INIS)

    Daburon, F.; Nizza, P.; Hatchikian, C.; Schmidt, J.-P.

    1966-01-01

    This work has been carried out in the framework of the determination of the physiological constants of a normal pig. The aim was to study the serum and plasma proteins of this animal species, the ultimate object being to discover whether the qualitative and quantitative changes in these proteins can make a significant contribution to the establishment of a biological dosimetry for irradiated pigs. The serum and plasma from a normal pig were analyzed first by various simple electrophoretic methods and then by immuno-electrophoresis. As a result of the particular characteristics of pig serum we have gradually been led to make numerous modifications to the techniques used for human serums or for those of small laboratory animals. Much careful work and patience were required in order to obtain reproducible results. (authors) [fr

  17. Effects of N-glycosylation on protein conformation and dynamics: Protein Data Bank analysis and molecular dynamics simulation study.

    Science.gov (United States)

    Lee, Hui Sun; Qi, Yifei; Im, Wonpil

    2015-03-09

    N-linked glycosylation is one of the most important, chemically complex, and ubiquitous post-translational modifications in all eukaryotes. The N-glycans that are covalently linked to proteins are involved in numerous biological processes. There is considerable interest in developments of general approaches to predict the structural consequences of site-specific glycosylation and to understand how these effects can be exploited in protein design with advantageous properties. In this study, the impacts of N-glycans on protein structure and dynamics are systematically investigated using an integrated computational approach of the Protein Data Bank structure analysis and atomistic molecular dynamics simulations of glycosylated and deglycosylated proteins. Our study reveals that N-glycosylation does not induce significant changes in protein structure, but decreases protein dynamics, likely leading to an increase in protein stability. Overall, these results suggest not only a common role of glycosylation in proteins, but also a need for certain proteins to be properly glycosylated to gain their intrinsic dynamic properties.

  18. Envelope proteins of bovine herpesvirus 1: immunological and biochemical studies

    International Nuclear Information System (INIS)

    Rodriguez Roque, L.L.

    1986-01-01

    The authors studied immunological and biochemical properties of the bovid herpesvirus 1 (BHV-1) envelope proteins in order to understand the pathogenesis of BHV-1 infection and to provide basic information for the production of effective subunit vaccines against BHV-1. Ten glycoproteins MW 180, 150, 130, 115, 97, 77, 74, 64, 55, and 45 kilodaltons (K), and a single non-glycosylated 108 K protein were quantitatively removed from purified BHV-1 virions by detergent treatment. These glycoproteins were present on the virion envelope and on the surface of BHV-1 infected cells. The quantitative removal from virions by treatment with nonionic detergents and their presence on the surface of infected cells indicate that 180/97, 150/77, and 130/74/55 K are major components of the BHV-1 envelope and are also the targets of virus neutralizing humoral immune response. Envelope glycoproteins of herpes simplex type 1 (HSV-1) bind immunoglobulin by the Fc end and it is suggested this may increase pathogenicity of this virus. They searched for a similar function in BVH-1 by measuring the ability of BHV-1 infected cells and viral envelope proteins to bind radiolabelled rabbit and bovine IgG. Binding activity for rabbit IgG or bovine IgG-Fc could not be demonstrated by BHV-1 infected MDBK cells, whereas, MDBK cells infected with HSV-1 bound rabbit IgG and bovine IgG-Fc. None of the three major envelope proteins of BHV-1 bound to rabbit or bovine IgG. The results of this study indicate that BHV-1, unlike some other herpesviruses, lack Fc binding activity

  19. Studies on the sulfur metabolism of cows on protein-free and low-protein feed

    Directory of Open Access Journals (Sweden)

    Eino Matikkala

    1977-09-01

    Full Text Available The influence of purified, protein-free feed with urea and ammonium salts as nitrogen sources (0-feed and of non-purified, urea-rich, low-protein feeds (ULP-feed on the sulfur metabolism of cows has been studied by determining the contents of sulfur fractions in faeces, urine, milk, blood and rumen fluid. The sulfur of 0-feed was composed entirely of inorganic sulfate. During balance trials the N:S ratio in the feed varied from 6.1 to 9.5, and the sulfur content from 0.22 to 0.31 % of the dry matter. In every trial (seven with 0-feed and two with ULP-feed, of five or seven days duration, the cows were in high-positive sulfur balance. The 0-cows excreted a greater proportion of their total sulfur output via urine than the ULP-cows. The excretion of inorganic sulfate sulfur, as a proportion of the urinary and faecal sulfur, was greater for 0-cows than for ULP- or NorP-cows (cows on normal, protein-rich feed; the opposite was the case with regard to the excretion of ester sulfate sulfur and neutral sulfur. The sulfur contents of milk and blood showed only minor inter-feed differences. The sulfate content in the rumen fluid of the 0-cow rose rapidly after the commencement of feeding and then fell quite rapidly. We conclude tentatively that in the rumen of the 0-cow hydrogen sulfide is generated so quickly that the whole of it cannot be used for the synthesis of sulfur-containing compounds, a considerable proportion of it being lost in eructations or excreted as inorganic sulfates in the urine.

  20. Digital Interior Design by Stailia Design Oy

    OpenAIRE

    Lindroos, Jaana

    2017-01-01

    The objective of the thesis work is to research and create a web based service in a field of interior design. With my project, I am hoping to find out whether this kind of web service in the field of interior design can work in general and that the process together with the actual order form on internet is smooth from both customer and company point of view. The company has interior design related services but none entirely executed on the web. The target is to create a totally new service/pr...

  1. Computer vision based room interior design

    Science.gov (United States)

    Ahmad, Nasir; Hussain, Saddam; Ahmad, Kashif; Conci, Nicola

    2015-12-01

    This paper introduces a new application of computer vision. To the best of the author's knowledge, it is the first attempt to incorporate computer vision techniques into room interior designing. The computer vision based interior designing is achieved in two steps: object identification and color assignment. The image segmentation approach is used for the identification of the objects in the room and different color schemes are used for color assignment to these objects. The proposed approach is applied to simple as well as complex images from online sources. The proposed approach not only accelerated the process of interior designing but also made it very efficient by giving multiple alternatives.

  2. Interior design of a two-dimensional semiclassical black hole

    Science.gov (United States)

    Levanony, Dana; Ori, Amos

    2009-10-01

    We look into the inner structure of a two-dimensional dilatonic evaporating black hole. We establish and employ the homogenous approximation for the black-hole interior. Two kinds of spacelike singularities are found inside the black hole, and their structure is investigated. We also study the evolution of spacetime from the horizon to the singularity.

  3. Interior design of a two-dimensional semiclassical black hole

    International Nuclear Information System (INIS)

    Levanony, Dana; Ori, Amos

    2009-01-01

    We look into the inner structure of a two-dimensional dilatonic evaporating black hole. We establish and employ the homogenous approximation for the black-hole interior. Two kinds of spacelike singularities are found inside the black hole, and their structure is investigated. We also study the evolution of spacetime from the horizon to the singularity.

  4. The Integration of Interior Architecture Education with Digital Design Approaches

    Science.gov (United States)

    Yazicioglu, Deniz Ayse

    2011-01-01

    It is inevitable that as a result of progress in technology and the changes in the ways with which design is conceived, interior architecture schools should be updated according to these requirements and that new educational processes should be tried out. It is for this reason that the scope and aim of this study have been determined as being the…

  5. Group Projects in Interior Design Studio Classes: Peer Feedback Benefits

    Science.gov (United States)

    Jurado, Juan A.

    2011-01-01

    Group projects have been shown to be effective for providing peer feedback in classrooms. While students in regular enrollment classes benefit from peer feedback, low-enrollment classes face many challenges. This study compares peer feedback effectiveness between two interior design studio classes with different design projects. In one class,…

  6. Perceptions of Interior Design Program Chairs Regarding Credentials for Faculty

    Science.gov (United States)

    Miller, Beth R.

    2017-01-01

    The purpose of this study was to determine whether program chairs in interior design have a preferred degree credential for candidates seeking a full-time, tenure-track position or other full-time position at their institution and to determine if there is a correlation between this preference and the program chair's university's demographics,…

  7. Improving FCS Accountability: Increasing STEM Awareness with Interior Design Modules

    Science.gov (United States)

    Etheredge, Jessica; Moody, Dana; Cooper, Ashley

    2014-01-01

    This paper demonstrates ways in which family and consumer sciences (FCS) educators can explore more opportunities to integrate Science, Technology, Engineering, and Math (STEM) principles into secondary education curriculum. Interior design is used as a case study for creating learning modules that incorporate STEM principles in a creative and…

  8. Group Dynamics in the Interior Design Studio: Student Perceptions

    Science.gov (United States)

    Hill, Caroline

    2008-01-01

    This article presents the findings of a study measuring the classroom climates in collegiate interior design studios and considers these findings within the group dynamics theory framework. Three groups of students completed the College Classroom Environment Scales (CCES) questionnaire. Five of the six CCES subscale F ratios were statistically…

  9. Possibilities to improve the aircraft interior comfort experience

    NARCIS (Netherlands)

    Vink, P.; Bazley, C.; Kamp, I.; Blok, M.

    2012-01-01

    Comfort plays an increasingly important role in the interior design of airplanes. Although ample research has been conducted on airplane design technology, only a small amount of public scientific information is available addressing the passenger's opinion. In this study, more than 10,000 internet

  10. Study on Fusion Protein and Its gene in Baculovirus Specificity

    International Nuclear Information System (INIS)

    Nemr, W.A.H.

    2012-01-01

    Baculoviruses are subdivided into two groups depending on the type of budded virus envelop fusion protein; group I utilized gp64 which include the most of nucleopolyhedroviruses (NPVs), group II utilized F protein which include the remnants of NPVs and all Granuloviruses (GVs). Recent studies reported the viral F protein coding gene as a host cellular sourced gene and may evolutionary acquired from the host genome referring to phylogeny analysis of fusion proteins. Thus, it was deduced that F protein coding gene is species- specific nucleotide sequence related to the type of the specific host and if virus could infect an unexpected host, the resulted virus may encode a vary F gene. In this regard, the present study utilized the mentioned properties of F gene in an attempt to produce a model of specific and more economic wider range granulovirus bio- pesticide able to infect both Spodoptera littoralis and Phthorimaea operculella larvae. Multiple sequence alignment and phylogeny analysis were performed on six members of group II baculovirus, novel universal PCR primers were manually designed from the conserved regions in the alignment graph, targeted to amplify species- specific sequence entire F gene open reading frame (ORF) which is useful in molecular identification of baculovirus in unknown samples. So, the PCR product of SpliGV used to prepare a specific probe for the F gene of this type of virus. Results reflected that it is possible to infect S. littoralis larvae by PhopGV if injected into larval haemocoel, the resulted virus of this infection showed by using DNA hybridization technique to be encode to F gene homologous with the F gene of Spli GV, which is revealed that the resulted virus acquired this F gene sequence from the host genome after infection. Consequently, these results may infer that if genetic aberrations occur in the host genome, this may affect in baculoviral infectivity. So, this study aimed to investigate the effect of gamma radiation at

  11. Thematic Interior at the Indischetafel Café As a Media for Forming Bandung Tempo Dulu’s Athmosphere

    Directory of Open Access Journals (Sweden)

    Tiara Isfiaty

    2017-12-01

    Full Text Available The interior elements designed in a specific theme are aimed to shape a character, a per- ception, and an atmosphere of spaces. In Bandung, culinary facilities that carry the theme of the old-style interior design of the Dutch East Indies are quite popular. This study aims to contribute guidance in creating the quality of space by applying the selection of decoration and furniture elements (moveable interior elements and the arrangement of walls, floors, and ceilings (unmoveable interior elements. This study applies a case study as a research method and a direct observation of the Indischetafel Café, while the analysis uses a descrip- tive analysis method. This study is to examine aspects of interior element arrangement in the Indischetafel Café in bringing the atmosphere of Bandung Tempo Dulu.   Keywords: thematic interiorinterior elements, space atmosphere, Bandung Tempo Dulu

  12. Autoradiographic study of nuclear protein acetylation during Locust spermiogenesis

    International Nuclear Information System (INIS)

    Bouvier, D.; Chevaillier, P.

    1975-01-01

    Autoradiographic studies, at the light and electron microscope level, demonstrate that spermatid nuclei of the Locust Locusta migratoria incorporate 3 H-acetate, especially during the first stages of spermiogenesis. The highest level of acetate incorporation is observed during stage II of spermiogenesis. During this stage and the following, the spermatid nucleus undergoes a number of structural and chemical modifications: chromatin decondenses and somatic histones are progressively replaced by newly synthesized arginine-rich proteins. Therefore, the higher degree of acetylation of nuclear components coincides with chromatin decondensation and precedes the protein transition occurring in later stages. Cytochemical and autoradiographic tests have been realized so as to localize 3 H-acetate in the nuclear components. Trichloracetic acid was used at various concentrations: the action of hydrochloric acid, pronase and DNase was also tested. The results support the idea that proteins, and among them histones, are the only nuclear components to be acetylated during spermiogenesis. Thus, histone acetylation seems to play an important role in modulating histone-DNA interactions and allowing histone replacement [fr

  13. Interior Design's Role in Educational Specifications.

    Science.gov (United States)

    Keller, Mary Ann

    1986-01-01

    An experienced interior designer, equipped with a well-written educational specification, will specify the best materials and coordinate colors, materials, and furnishings in line with the district's budget. (MLF)

  14. Studies on the interaction of lidocaine with plasma proteins

    International Nuclear Information System (INIS)

    Adotey, J.

    1985-01-01

    This study sought to quantitate lidocaine's interaction with alpha-1-acid glycoprotein (AAG), human serum albumin (HSA), and AAG in the presence of HSA, and to determine the extent of displacement of lidocaine from its binding site(s) by selected cardiovascular drugs (dipyridamole, disopyramide and quinidine). Since the limited experimental work reported in this area has involved the use of a single lidocaine concentration, this study involved the evaluation of a range of lidocaine concentrations. Lidocaine interaction with plasma proteins (AAG and HSA) was studied at 37 0 C using an isothermal equilibrium dialysis system and 14 C-lidocaine HCl. A dialysis membrane (M.W. cutoff 12,000 to 14,000) separated the two chambers of each dialysis cell. The extent of 14 C-lidocaine dialysis was studied with respect to both drug and protein concentrations. Aliquots of each chamber of each of the cells were subjected to liquid scintillation counting (LSC) analyses for 14 C-lidocaine. The ratio of bound to free (R/F) lidocaine was evaluated as a function of AAG concentration from the LSC data. Scatchard and/or Rosenthal analyses were employed to evaluate n and k values where appropriate. Linear and multiple linear regression analyses of the data were appropriately performed

  15. Structure-function relationship of viral coat proteins : a site-directed spectroscopic study of M13 coat protein

    NARCIS (Netherlands)

    Stopar, D.

    1997-01-01

    This thesis describes the results of a spectroscopic study of the major coat protein of bacteriophage M13. During the infection process this protein is incorporated into the cytoplasmic membrane of Escherichia coli host cells. To specifically monitor the local structural changes

  16. Penerapan Interior Branding pada Hotel Yello

    OpenAIRE

    Gunawan, Astri Indrawati

    2017-01-01

    The development of entertainment and tourism in Surabaya has lead to increasing of tourist arrival. This condition makes hotel businesses flourishing. The 3 star hotel is currently the best-selling hotel due to adequate facilities at current economic level. To cope with the competition, many 3 star hotels applied branding in the interior. Interior branding is formed not only from the visual beauty, but rather to the room's atmosphere that contains stories and unique messages to influence the ...

  17. Discovering the interior of black holes

    Science.gov (United States)

    Brustein, Ram; Medved, A. J. M.; Yagi, K.

    2017-12-01

    The detection of gravitational waves (GWs) from black hole (BH) mergers provides an inroad toward probing the interior of astrophysical BHs. The general-relativistic description of the BH interior is that of empty spacetime with a (possibly) singular core. Recently, however, the hypothesis that the BH interior does not exist has been gaining traction, as it provides a means for resolving the BH information-loss problem. Here, we propose a simple method for answering the following question: Does the BH interior exist and, if so, does it contain some distribution of matter or is it mostly empty? Our proposal is premised on the idea that, similar to the case of relativistic, ultracompact stars, any BH-like object whose interior has some matter distribution should support fluid modes in addition to the conventional spacetime modes. In particular, the Coriolis-induced Rossby (r-) modes, whose spectrum is mostly insensitive to the composition of the interior matter, should be a universal feature of such BH-like objects. In fact, the frequency and damping time of these modes are determined by only the object's mass and speed of rotation. The r-modes oscillate at a lower frequency, decay at a slower rate, and produce weaker GWs than do the spacetime modes. Hence, they imprint a model-insensitive signature of a nonempty interior in the GW spectrum resulting from a BH merger. We find that future GW detectors, such as Advanced LIGO with its design sensitivity, have the potential of detecting such r-modes if the amount of GWs leaking out quantum mechanically from the interior of a BH-like object is sufficiently large.

  18. Determining building interior structures using compressive sensing

    Science.gov (United States)

    Lagunas, Eva; Amin, Moeness G.; Ahmad, Fauzia; Nájar, Montse

    2013-04-01

    We consider imaging of the building interior structures using compressive sensing (CS) with applications to through-the-wall imaging and urban sensing. We consider a monostatic synthetic aperture radar imaging system employing stepped frequency waveform. The proposed approach exploits prior information of building construction practices to form an appropriate sparse representation of the building interior layout. We devise a dictionary of possible wall locations, which is consistent with the fact that interior walls are typically parallel or perpendicular to the front wall. The dictionary accounts for the dominant normal angle reflections from exterior and interior walls for the monostatic imaging system. CS is applied to a reduced set of observations to recover the true positions of the walls. Additional information about interior walls can be obtained using a dictionary of possible corner reflectors, which is the response of the junction of two walls. Supporting results based on simulation and laboratory experiments are provided. It is shown that the proposed sparsifying basis outperforms the conventional through-the-wall CS model, the wavelet sparsifying basis, and the block sparse model for building interior layout detection.

  19. An analytic study on laminar film condensation along the interior surface of a cave-shaped cavity of a flat plate heat pipe

    International Nuclear Information System (INIS)

    Lee, Jin Sung; Kim, Tae Gyu; Park, Tae Sang; Kim, Choong Sik; Park, Chan Hoon

    2002-01-01

    An analytic approach has been employed to study condensate film thickness distribution inside cave-shaped cavity of a flat plate heat pipe. The results indicate that the condensate film thickness largely depends on mass flow rate and local velocity of condensate. The increasing rate of condensate film for circular region reveals about 50% higher value than that of vertical region. The physical properties of working fluid affect significantly the condensate film thickness, such as the condensate film thickness for the case of FC-40 are 5 times larger than that of water. In comparison with condensation on a vertical wall, the average heat transfer coefficient in the cave-shaped cavity presented 10∼15% lower values due to the fact that the average film thickness formed inside the cave-shaped cavity was larger than that of the vertical wall with an equivalent flow length. A correlation formula which is based on the condensate film analysis for the cave-shaped cavity to predict average heat transfer coefficient is presented. Also, the critical minimum fill charge ratio of working fluid based on condensate film analysis has been predicted, and the minimum fill charge ratios for FC-40 and water are about Ψ crit =3∼7%, Ψ crit =0.5∼1.3%, respectively, in the range of heat flux q = 5∼90kW/m 2

  20. Protein-detergent interactions in single crystals of membrane proteins studied by neutron crystallography

    International Nuclear Information System (INIS)

    Timmins, P.A.; Pebay-Peyroula, E.

    1994-01-01

    The detergent micelles surrounding membrane protein molecules in single crystals can be investigated using neutron crystallography combined with H 2 O/D 2 O contrast variation. If the protein structure is known then the contrast variation method allows phases to be determined at a contrast where the detergent dominates the scattering. The application of various constraints allows the resulting scattering length density map to be realistically modeled. The method has been applied to two different forms of the membrane protein porin. In one case both hydrogenated and partially deuterated protein were used, allowing the head group and tail to be distinguished

  1. Protein-detergent interactions in single crystals of membrane proteins studied by neutron crystallography

    Energy Technology Data Exchange (ETDEWEB)

    Timmins, P.A. [ILL, Grenoble (France); Pebay-Peyroula, E. [IBS-UJF Grenoble (France)

    1994-12-31

    The detergent micelles surrounding membrane protein molecules in single crystals can be investigated using neutron crystallography combined with H{sub 2}O/D{sub 2}O contrast variation. If the protein structure is known then the contrast variation method allows phases to be determined at a contrast where the detergent dominates the scattering. The application of various constraints allows the resulting scattering length density map to be realistically modeled. The method has been applied to two different forms of the membrane protein porin. In one case both hydrogenated and partially deuterated protein were used, allowing the head group and tail to be distinguished.

  2. Quantitative surface studies of protein adsorption by infrared spectroscopy. II. Quantification of adsorbed and bulk proteins

    International Nuclear Information System (INIS)

    Fink, D.J.; Hutson, T.B.; Chittur, K.K.; Gendreau, R.M.

    1987-01-01

    Attenuated total reflectance Fourier transform infrared spectra of surface-adsorbed proteins are correlated with concentration measurements determined by 125 I-labeled proteins. This paper demonstrates that linear correlations between the intensity of the major bands of proteins and the quantity of proteins can be obtained for human albumin and immunoglobulin G up to surface concentrations of approximately 0.25 microgram/cm2. A poorer correlation was observed for human fibrinogen. A linear correlation was also observed between the concentration in the bulk solution and the major bands of albumin up to a concentration of 60 mg/ml

  3. Decaying shock studies of phase transitions in MgO-SiO2 systems: implications for the Super-Earths' interiors

    Science.gov (United States)

    Bolis, R.; Morard, G.; Vinci, T.; Ravasio, A.; Bambrink, E.; Guarguaglini, M.; Koenig, M.; Musella, R.; Françoise, R.; Bouchet, J.; Ozaki, N.; Miyanishi, K.; Sekine, T.; Sakawa, Y.; Sano, T.; Kodama, R.; Guyot, F. J.; Benuzzi, A.

    2016-12-01

    Mantles of telluric exoplanets, so-called Earth-like and Super-Earths, are expected to be mainly composed of different type of oxides, such as periclase (MgO), enstatite (MgSiO3) and forsterite (Mg2SiO4). Determining the phase diagrams, melting curves and liquid properties of these compounds under extreme pressure (0.2-1 TPa) is crucial to model the internal dynamic of these exoplanets, as the melting of mantle components controls planetary temperature profiles [6]. Experimentally, these planetary thermodynamic states can be achieved with laser-shock compression. Here we present laser-driven decaying shock experiments on MgO, MgSiO3 and Mg2SiO4 samples performed at LULI and GEKKO laser facilities, where we focused 1.2-2.5 ns laser pulses with an intensity between 3-8 1013 W/cm2 exploring pressures between 0.2 and 1 TPa and temperature between 5000 and 30000 K. We determined the thermodynamic states using rear side optical diagnostics. We observed a single transition for MgO associated to melting (at 0.47 TPa ± 0.04 and 9863 ± 812 K) and no evidence of a liquid-liquid transition, dissociation or melting for all the other compounds in the range 150-500 Gpa and 200-800 Gpa respectively for MgSiO3 and Mg2SiO4. Some implications are presented comparing our data experimental and theoretical data found in literature [1, 2, 3, 4, 5]. In particular these results represent a key input to solve the controversy on a possible MgSiO3 liquid-liquid phase transition. Moreover we propose a revision of the phase diagram of MgO, with a lower melting line which results in a lower temperature profile for super-Earths. Finally our data evidence the presence of a poor electrically conducting liquid in the phase diagram of all the studied material, with implications for the modelling of magnetic field generation via dynamo mechanism.[1] McWilliams et al., Science 338 (2012): 1330-1333. [2] Spaulding et al., Physical Review Letters108 (2012): 065701. [3] Root et al., Physical Review

  4. Application of Solution NMR Spectroscopy to Study Protein Dynamics

    Directory of Open Access Journals (Sweden)

    Christoph Göbl

    2012-03-01

    Full Text Available Recent advances in spectroscopic methods allow the identification of minute fluctuations in a protein structure. These dynamic properties have been identified as keys to some biological processes. The consequences of this structural flexibility can be far‑reaching and they add a new dimension to the structure-function relationship of biomolecules. Nuclear Magnetic Resonance (NMR spectroscopy allows the study of structure as well as dynamics of biomolecules in a very broad range of timescales at atomic level. A number of new NMR methods have been developed recently to allow the measurements of time scales and spatial fluctuations, which in turn provide the thermodynamics associated with the biological processes. Since NMR parameters reflect ensemble measurements, structural ensemble approaches in analyzing NMR data have also been developed. These new methods in some instances can even highlight previously hidden conformational features of the biomolecules. In this review we describe several solution NMR methods to study protein dynamics and discuss their impact on important biological processes.

  5. Modeling vehicle interior noise exposure dose on freeways: Considering weaving segment designs and engine operation.

    Science.gov (United States)

    Li, Qing; Qiao, Fengxiang; Yu, Lei; Shi, Junqing

    2017-07-05

    Vehicle interior noise functions at the dominant frequencies of 500 Hz below and around 800 Hz, which fall into the bands that may impair hearing. Recent studies demonstrated that freeway commuters are chronically exposed to vehicle interior noise, bearing the risk of hearing impairment. The interior noise evaluation process is mostly conducted in a laboratory environment. The test results and the developed noise models may underestimate or ignore the noise effects from dynamic traffic and road conditions and configuration. However, the interior noise is highly associated with vehicle maneuvering. The vehicle maneuvering on a freeway weaving segment is more complex because of its nature of conflicting areas. This research is intended to explore the risk of the interior noise exposure on freeway weaving segments for freeway commuters and to improve the interior noise estimation by constructing a decision tree learning-based noise exposure dose (NED) model, considering weaving segment designs and engine operation. On-road driving tests were conducted on 12 subjects on State Highway 288 in Houston, Texas. On-board Diagnosis (OBD) II, a smartphone-based roughness app, and a digital sound meter were used to collect vehicle maneuvering and engine information, International Roughness Index, and interior noise levels, respectively. Eleven variables were obtainable from the driving tests, including the length and type of a weaving segment, serving as predictors. The importance of the predictors was estimated by their out-of-bag-permuted predictor delta errors. The hazardous exposure level of the interior noise on weaving segments was quantified to hazard quotient, NED, and daily noise exposure level, respectively. Results showed that the risk of hearing impairment on freeway is acceptable; the interior noise level is the most sensitive to the pavement roughness and is subject to freeway configuration and traffic conditions. The constructed NED model shows high predictive

  6. A study of quality measures for protein threading models

    Directory of Open Access Journals (Sweden)

    Rychlewski Leszek

    2001-08-01

    Full Text Available Abstract Background Prediction of protein structures is one of the fundamental challenges in biology today. To fully understand how well different prediction methods perform, it is necessary to use measures that evaluate their performance. Every two years, starting in 1994, the CASP (Critical Assessment of protein Structure Prediction process has been organized to evaluate the ability of different predictors to blindly predict the structure of proteins. To capture different features of the models, several measures have been developed during the CASP processes. However, these measures have not been examined in detail before. In an attempt to develop fully automatic measures that can be used in CASP, as well as in other type of benchmarking experiments, we have compared twenty-one measures. These measures include the measures used in CASP3 and CASP2 as well as have measures introduced later. We have studied their ability to distinguish between the better and worse models submitted to CASP3 and the correlation between them. Results Using a small set of 1340 models for 23 different targets we show that most methods correlate with each other. Most pairs of measures show a correlation coefficient of about 0.5. The correlation is slightly higher for measures of similar types. We found that a significant problem when developing automatic measures is how to deal with proteins of different length. Also the comparisons between different measures is complicated as many measures are dependent on the size of the target. We show that the manual assessment can be reproduced to about 70% using automatic measures. Alignment independent measures, detects slightly more of the models with the correct fold, while alignment dependent measures agree better when selecting the best models for each target. Finally we show that using automatic measures would, to a large extent, reproduce the assessors ranking of the predictors at CASP3. Conclusions We show that given a

  7. Dendronic trimaltoside amphiphiles (DTMs) for membrane protein study

    DEFF Research Database (Denmark)

    Sadaf, Aiman; Du, Yang; Santillan, Claudia

    2017-01-01

    The critical contribution of membrane proteins in normal cellular function makes their detailed structure and functional analysis essential. Detergents, amphipathic agents with the ability to maintain membrane proteins in a soluble state in aqueous solution, have key roles in membrane protein...... alkyl chains by introducing dendronic hydrophobic groups connected to a trimaltoside head group, designated dendronic trimaltosides (DTMs). Representative DTMs conferred enhanced stabilization to multiple membrane proteins compared to the benchmark conventional detergent, DDM. One DTM (i.e., DTM-A6...

  8. Assessment of protein allergenicity studies in brown Norway rats

    NARCIS (Netherlands)

    Knippels, L.M.J.; Penninks, A.H.

    2002-01-01

    For the safety evaluation of genetically engineered crops, the potential allergenicity of the newly introduced protein(s) has become an important issue. There is, however, no universal and reliable test system for the evaluation of the allergic sensitizing ability of food proteins. Therefore, there

  9. Interaction between Protein, Phytate, and Microbial Phytase. In Vitro Studies

    NARCIS (Netherlands)

    Kies, A.K.; Jonge, de L.H.; Kemme, P.A.; Jongbloed, A.W.

    2006-01-01

    The interaction between protein and phytate was investigated in vitro using proteins extracted from five common feedstuffs and from casein. The appearance of naturally present soluble protein-phytate complexes in the feedstuffs, the formation of complexes at different pHs, and the degradation of

  10. The Architectonic Experience of Body and Space in Augmented Interiors

    Science.gov (United States)

    Pasqualini, Isabella; Blefari, Maria Laura; Tadi, Tej; Serino, Andrea; Blanke, Olaf

    2018-01-01

    The environment shapes our experience of space in constant interaction with the body. Architectonic interiors amplify the perception of space through the bodily senses; an effect also known as embodiment. The interaction of the bodily senses with the space surrounding the body can be tested experimentally through the manipulation of multisensory stimulation and measured via a range of behaviors related to bodily self-consciousness. Many studies have used Virtual Reality to show that visuotactile conflicts mediated via a virtual body or avatar can disrupt the unified subjective experience of the body and self. In the full-body illusion paradigm, participants feel as if the avatar was their body (ownership, self-identification) and they shift their center of awareness toward the position of the avatar (self-location). However, the influence of non-bodily spatial cues around the body on embodiment remains unclear, and data about the impact of architectonic space on human perception and self-conscious states are sparse. We placed participants into a Virtual Reality arena, where large and narrow virtual interiors were displayed with and without an avatar. We then applied synchronous or asynchronous visuotactile strokes to the back of the participants and avatar, or, to the front wall of the void interiors. During conditions of illusory self-identification with the avatar, participants reported sensations of containment, drift, and touch with the architectonic environment. The absence of the avatar suppressed such feelings, yet, in the large space, we found an effect of continuity between the physical and the virtual interior depending on the full-body illusion. We discuss subjective feelings evoked by architecture and compare the full-body illusion in augmented interiors to architectonic embodiment. A relevant outcome of this study is the potential to dissociate the egocentric, first-person view from the physical point of view through augmented architectonic space. PMID

  11. The Architectonic Experience of Body and Space in Augmented Interiors.

    Science.gov (United States)

    Pasqualini, Isabella; Blefari, Maria Laura; Tadi, Tej; Serino, Andrea; Blanke, Olaf

    2018-01-01

    The environment shapes our experience of space in constant interaction with the body. Architectonic interiors amplify the perception of space through the bodily senses; an effect also known as embodiment. The interaction of the bodily senses with the space surrounding the body can be tested experimentally through the manipulation of multisensory stimulation and measured via a range of behaviors related to bodily self-consciousness. Many studies have used Virtual Reality to show that visuotactile conflicts mediated via a virtual body or avatar can disrupt the unified subjective experience of the body and self. In the full-body illusion paradigm, participants feel as if the avatar was their body (ownership, self-identification) and they shift their center of awareness toward the position of the avatar (self-location). However, the influence of non-bodily spatial cues around the body on embodiment remains unclear, and data about the impact of architectonic space on human perception and self-conscious states are sparse. We placed participants into a Virtual Reality arena, where large and narrow virtual interiors were displayed with and without an avatar. We then applied synchronous or asynchronous visuotactile strokes to the back of the participants and avatar, or, to the front wall of the void interiors. During conditions of illusory self-identification with the avatar, participants reported sensations of containment, drift, and touch with the architectonic environment. The absence of the avatar suppressed such feelings, yet, in the large space, we found an effect of continuity between the physical and the virtual interior depending on the full-body illusion. We discuss subjective feelings evoked by architecture and compare the full-body illusion in augmented interiors to architectonic embodiment. A relevant outcome of this study is the potential to dissociate the egocentric, first-person view from the physical point of view through augmented architectonic space.

  12. The Architectonic Experience of Body and Space in Augmented Interiors

    Directory of Open Access Journals (Sweden)

    Isabella Pasqualini

    2018-04-01

    Full Text Available The environment shapes our experience of space in constant interaction with the body. Architectonic interiors amplify the perception of space through the bodily senses; an effect also known as embodiment. The interaction of the bodily senses with the space surrounding the body can be tested experimentally through the manipulation of multisensory stimulation and measured via a range of behaviors related to bodily self-consciousness. Many studies have used Virtual Reality to show that visuotactile conflicts mediated via a virtual body or avatar can disrupt the unified subjective experience of the body and self. In the full-body illusion paradigm, participants feel as if the avatar was their body (ownership, self-identification and they shift their center of awareness toward the position of the avatar (self-location. However, the influence of non-bodily spatial cues around the body on embodiment remains unclear, and data about the impact of architectonic space on human perception and self-conscious states are sparse. We placed participants into a Virtual Reality arena, where large and narrow virtual interiors were displayed with and without an avatar. We then applied synchronous or asynchronous visuotactile strokes to the back of the participants and avatar, or, to the front wall of the void interiors. During conditions of illusory self-identification with the avatar, participants reported sensations of containment, drift, and touch with the architectonic environment. The absence of the avatar suppressed such feelings, yet, in the large space, we found an effect of continuity between the physical and the virtual interior depending on the full-body illusion. We discuss subjective feelings evoked by architecture and compare the full-body illusion in augmented interiors to architectonic embodiment. A relevant outcome of this study is the potential to dissociate the egocentric, first-person view from the physical point of view through augmented

  13. Pengaruh Elemen Interior Restoran terhadap Pengalaman Nostalgia Konsumen

    Directory of Open Access Journals (Sweden)

    Miranti Sari Rahma

    2017-09-01

    Full Text Available Selama beberapa tahun terakhir, restoran bertema "nostalgia" menjadi populer di Bandung. Penelitian ini bertujuan untuk mengeksplorasi unsur-unsur lingkungan yang disukai konsumen di restoran yang dapat mempengaruhi respon pengalaman nostalgia konsumen di restoran. Penelitian ini menggunakan metode deskriptif eksploratif untuk menentukan variabel yang dapat digunakan sebagai stimulus eksperimen berikutnya guna mendapatkan respon persepsi, emosi, dan sikap. Data hasil eksperimen dianalisis menggunakan ANOVA, menunjukkan bahwa (1 elemen interior restoran yang paling mempengaruhi pengalaman nostalgia konsumen di restoran; (2 meskipun gaya modern dapat membangkitkan respon persepsi, emosi dan sikap nostalgia, elemen dekoratif dan furnitur kolonial paling efektif dapat membangkitkan pengalaman nostalga; (3 ditemukan juga hubungan antara persepsi, emosi, dan sikap kaitannya dengan proses persepsi, emosi dapat mempengaruhi sikap konsumen di restoran, hal ini sejalan dengan mekanisme persepsi dimana kontribusi pengalaman masa lalu dapat membangkitkan emosi sehingga mempengaruhi persepsi dan munculnya sikap konsumen di restoran. Effect of Restaurant Interior Elements on Consumer Nostalgic Experience Abstract. In the last few years, ‘nostalgic’ restaurants have become quite popular in Bandung. This study was aimed at exploring interior elements that may evoke a nostalgic experience in consumers in a restaurant. In this study, an exploratory descriptive method was applied to determine the variables to be used as stimulus in the experiment to get perception, emotion, and attitude responses. The data of this research were analyzed by ANOVA and showed that: (1 interior elements of the restaurant influenced the nostalgic experience by consumers; (2 colonial decorative elements and colonial style furniture, even if other interior elements have a modern style, can evoke nostalgic perceptions, emotions, and attitudes; (3 a link was found between perceptions

  14. Study on protein conformation and adsorption behaviors in nanodiamond particle-protein complexes

    International Nuclear Information System (INIS)

    Wang Haidong; Niu, Catherine Hui; Yang Qiaoqin; Badea, Ildiko

    2011-01-01

    In the present research, the conformation of bovine serum albumin (BSA) in the nanodiamond particle (ND)-BSA complex was studied by Fourier transform infrared spectroscopy, fluorescence spectroscopy, UV-vis spectroscopy, and circular dichroism spectroscopy. The spectroscopic study revealed that most BSA structural features could be preserved in the complex though the BSA underwent conformational changes in the complex due to ND-BSA interaction. In addition, BSA adsorption isotherms and zeta-potential measurements were employed to investigate the pH dependence of the ND-BSA interaction. The changes in surface charge of the ND-BSA complex with pH variations indicated that the binding of BSA to ND might lead to not only the adsorption of BSA onto the ND surface but also the partial breakup of ND aggregates into relatively small ND-BSA aggregates because of the strong binding force between ND and BSA. The results show that ND is an excellent platform for protein immobilization with high affinity and holds great potential to be used for biosensor applications.

  15. Study on protein conformation and adsorption behaviors in nanodiamond particle-protein complexes

    Energy Technology Data Exchange (ETDEWEB)

    Wang Haidong [Department of Biomedical Engineering, University of Saskatchewan, Saskatoon, S7N 5A9 (Canada); Niu, Catherine Hui [Department of Chemical Engineering, University of Saskatchewan, Saskatoon, S7N 5A9 (Canada); Yang Qiaoqin [Department of Mechanical Engineering, University of Saskatchewan, Saskatoon, S7N 5A9 (Canada); Badea, Ildiko, E-mail: catherine.niu@usask.ca [Drug Design and Discovery Research Group, College of Pharmacy and Nutrition, University of Saskatchewan, Saskatoon, S7N 5C9 (Canada)

    2011-04-08

    In the present research, the conformation of bovine serum albumin (BSA) in the nanodiamond particle (ND)-BSA complex was studied by Fourier transform infrared spectroscopy, fluorescence spectroscopy, UV-vis spectroscopy, and circular dichroism spectroscopy. The spectroscopic study revealed that most BSA structural features could be preserved in the complex though the BSA underwent conformational changes in the complex due to ND-BSA interaction. In addition, BSA adsorption isotherms and zeta-potential measurements were employed to investigate the pH dependence of the ND-BSA interaction. The changes in surface charge of the ND-BSA complex with pH variations indicated that the binding of BSA to ND might lead to not only the adsorption of BSA onto the ND surface but also the partial breakup of ND aggregates into relatively small ND-BSA aggregates because of the strong binding force between ND and BSA. The results show that ND is an excellent platform for protein immobilization with high affinity and holds great potential to be used for biosensor applications.

  16. Study of protein and metabolic profile of sugarcane workers

    Energy Technology Data Exchange (ETDEWEB)

    Polachini, G.M.; Tajara, E.H. [Faculdade de Medicina de Sao Jose do Rio Preto (FAMERP), SP (Brazil); Santos, U.P. [Universidade de Sao Paulo (USP), SP (Brazil); Zeri, A.C.M.; Paes Leme, A.F. [Laboratorio Nacional de Luz Sincrotron (LNLS), Campinas, SP (Brazil)

    2012-07-01

    Full text: The National Alcohol Program (Proalcool) is a successful Brazilian renewable fuel initiative aiming to reduce the country's oil dependence. Producing ethanol from sugar cane, the program has shown positive results although accompanied by potential damage. The environmental impact mainly derives from the particulate matter emissions due to sugarcane burning, which is potentially harmful to human health. The physical activity of sugarcane workers is repetitive and exhaustive and is carried out in presence of dust, smoke and soot. The efforts by the sugarcane workers during the labor process result in increased risks of nervous, respiratory and cardiovascular system diseases and also in premature death. The aim of the present study was to investigate the effect of occupational stress on protein and metabolic profile of sugarcane workers. Forty serum samples were analyzed by 1-DE and LC MS/MS proteomic shotgun strategy and nuclear magnetic resonance (NMR). A set of proteins was found to be altered in workers after crops when compared with controls. The analysis of NMR spectra by Chenomx also showed differences in the expression of metabolites. For example, lactate displayed higher levels in control subjects than in sugarcane workers, and vice versa for the acetate. The concentrations of the two metabolites were lower after the crop, except in the case of acetate, which remained uniform in the control subjects before and after the crop. The present findings can have important application for rational designs of preventive measures and early disease detection in sugarcane workers. (author)

  17. Structural and binding studies of SAP-1 protein with heparin.

    Science.gov (United States)

    Yadav, Vikash K; Mandal, Rahul S; Puniya, Bhanwar L; Kumar, Rahul; Dey, Sharmistha; Singh, Sarman; Yadav, Savita

    2015-03-01

    SAP-1 is a low molecular weight cysteine protease inhibitor (CPI) which belongs to type-2 cystatins family. SAP-1 protein purified from human seminal plasma (HuSP) has been shown to inhibit cysteine and serine proteases and exhibit interesting biological properties, including high temperature and pH stability. Heparin is a naturally occurring glycosaminoglycan (with varied chain length) which interacts with a number of proteins and regulates multiple steps in different biological processes. As an anticoagulant, heparin enhances inhibition of thrombin by the serpin antithrombin III. Therefore, we have employed surface plasmon resonance (SPR) to improve our understanding of the binding interaction between heparin and SAP-1 (protease inhibitor). SPR data suggest that SAP-1 binds to heparin with a significant affinity (KD = 158 nm). SPR solution competition studies using heparin oligosaccharides showed that the binding of SAP-1 to heparin is dependent on chain length. Large oligosaccharides show strong binding affinity for SAP-1. Further to get insight into the structural aspect of interactions between SAP-1 and heparin, we used modelled structure of the SAP-1 and docked with heparin and heparin-derived polysaccharides. The results suggest that a positively charged residue lysine plays important role in these interactions. Such information should improve our understanding of how heparin, present in the reproductive tract, regulates cystatins activity. © 2014 John Wiley & Sons A/S.

  18. Study of protein and metabolic profile of sugarcane workers

    International Nuclear Information System (INIS)

    Polachini, G.M.; Tajara, E.H.; Santos, U.P.; Zeri, A.C.M.; Paes Leme, A.F.

    2012-01-01

    Full text: The National Alcohol Program (Proalcool) is a successful Brazilian renewable fuel initiative aiming to reduce the country's oil dependence. Producing ethanol from sugar cane, the program has shown positive results although accompanied by potential damage. The environmental impact mainly derives from the particulate matter emissions due to sugarcane burning, which is potentially harmful to human health. The physical activity of sugarcane workers is repetitive and exhaustive and is carried out in presence of dust, smoke and soot. The efforts by the sugarcane workers during the labor process result in increased risks of nervous, respiratory and cardiovascular system diseases and also in premature death. The aim of the present study was to investigate the effect of occupational stress on protein and metabolic profile of sugarcane workers. Forty serum samples were analyzed by 1-DE and LC MS/MS proteomic shotgun strategy and nuclear magnetic resonance (NMR). A set of proteins was found to be altered in workers after crops when compared with controls. The analysis of NMR spectra by Chenomx also showed differences in the expression of metabolites. For example, lactate displayed higher levels in control subjects than in sugarcane workers, and vice versa for the acetate. The concentrations of the two metabolites were lower after the crop, except in the case of acetate, which remained uniform in the control subjects before and after the crop. The present findings can have important application for rational designs of preventive measures and early disease detection in sugarcane workers. (author)

  19. Structural studies on proton/protonation of the protein molecule

    International Nuclear Information System (INIS)

    Morimoto, Yukio; Kida, Akiko; Chatake, Toshiyuki; Yamaguchi, Hiroshi; Hosokawa, Keiichi; Murakami, Takuto; Umino, Masaaki; Tanaka, Ichiro; Hisatome, Ichiro; Yanagisawa, Yasutake; Fujiwara, Satoshi; Hidaka, Yuji; Shimamoto, Shigeru; Fujiwara, Mitsutoshi; Nakanishi, Takeyoshi

    2015-01-01

    This paper reports three studies involved in the analysis of protons and protonation at physiologically active sites in protein molecules. (1) 'Elucidation of the higher-order structure formation and activity performing mechanism of yeast proteasome.' With an aim to apply to anti-cancer drugs, this study performed the shape analysis of the total structure of 26S proteasome using small-angle X-ray scattering to clarify the complex form where controlling elements bonded to the both ends of 20S catalyst body, and analyzed the complex structure between the active sites of 20S and inhibitor (drug). (2) 'Basic study on the neutron experiment of biomolecules such as physiologically active substances derived from Natto-bacteria.' This study conducted the purification, crystallization, and X-ray analysis experiment of nattokinase; high-grade purification and solution experiment of vitamin K2 (menaquinone-7); and Z-DNA crystal structure study related to the neutron crystal analysis of DNA as another biomolecule structure study. (3) 'Functional evaluation on digestive enzymes derived from Nephila clavata.' As an Alzheimer's disease-related amyloid fibril formation model, this study carried out elucidation on the fibrosis and fiber-forming mechanism of the traction fiber of Nephila clavata, and the functional analysis of its degrading enzyme. (A.O.)

  20. Studying Protein-Protein Interactions by Biotin AP-Tagged Pulldown and LTQ-Orbitrap Mass Spectrometry.

    Science.gov (United States)

    Xie, Zhongqiu; Jia, Yuemeng; Li, Hui

    2017-01-01

    The study of protein-protein interactions represents a key aspect of biological research. Identifying unknown protein binding partners using mass spectrometry (MS)-based proteomics has evolved into an indispensable strategy in drug discovery. The classic approach of immunoprecipitation with specific antibodies against the proteins of interest has limitations, such as the need for immunoprecipitation-qualified antibody. The biotin AP-tag pull-down system has the advantage of high specificity, ease of use, and no requirement for antibody. It is based on the high specificity, high affinity interaction between biotin and streptavidin. After pulldown, in-gel tryptic digestion and tandem mass spectrometry (MS/MS) analysis of sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) protein bands can be performed. In this work, we provide protocols that can be used for the identification of proteins that interact with FOXM1, a protein that has recently emerged as a potential biomarker and drug target in oncotherapy, as an example. We focus on the pull-down procedure and assess the efficacy of the pulldown with known FOXM1 interactors such as β-catenin. We use a high performance LTQ Orbitrap MSn system that combines rapid LTQ ion trap data acquisition with high mass accuracy Orbitrap analysis to identify the interacting proteins.

  1. Protein selectivity with immobilized metal ion-tacn sorbents: chromatographic studies with human serum proteins and several other globular proteins.

    Science.gov (United States)

    Jiang, W; Graham, B; Spiccia, L; Hearn, M T

    1998-01-01

    The chromatographic selectivity of the immobilized chelate system, 1,4,7-triazocyclononane (tacn), complexed with the borderline metal ions Cu2+, Cr3+, Mn2+, Co2+, Zn2+, and Ni2+ has been investigated with hen egg white lysozyme, horse heart cytochrome c, and horse skeletal muscle myoglobin, as well as proteins present in partially fractionated preparations of human plasma. The effects of ionic strength and pH of the loading and elution buffers on protein selectivities of these new immobilized metal ion affinity chromatographic (IMAC) systems have been examined. The results confirm that immobilized Mn;pl-tacn sorbents exhibit a novel type of IMAC behavior with proteins. In particular, the chromatographic properties of these immobilized M(n+)-tacn ligand systems were significantly different compared to the IMAC behavior observed with other types of immobilized tri- and tetradentate chelating ligands, such as iminodiacetic acid, O-phosphoserine, or nitrilotriacetic acid, when complexed with borderline metal ions. The experimental results have consequently been evaluated in terms of the additional contributions to the interactive processes mediated by effects other than solely the conventional lone pair Lewis soft acid-Lewis soft base coordination interactions, typically found for the IMAC of proteins with borderline and soft metal ions, such as Cu2+ or Ni2+.

  2. Studies on protein biosynthesis during grain development in relation to protein quality using tracers

    International Nuclear Information System (INIS)

    Mehta, S.L.; Lodha, M.L.

    1975-01-01

    The amino acid imbalance of storage proteins in grains is mainly due to the synthesis of nutritionally poor quality proteins during late maturation stage. In maize, zein fraction which is extremely deficient in lysine but rich in leucine accumulates during late maturation. Opqaue-2 mutant of maize is characterised by an increase in lysine and a decrease in leucine in the endospem protein which is a result of suppression of zein synthesis. In the investigation carried out using H 3 -UTP, it was found that the opaque-2 gene exerts a regulatory central on MRNA synthesis required for zein formation at early stages of maturation. (M.G.B.)

  3. Tidal constraints on the interior of Venus

    Science.gov (United States)

    Dumoulin, C.; Tobie, G.; Verhoeven, O.; Rosenblatt, P.; Rambaux, N.

    2017-12-01

    As a prospective study for a future exploration of Venus, we compute the tidal response of Venus' interior assuming various mantle compositions and temperature profiles representative of different scenarios of Venus' formation and evolution. The mantle density and seismic velocities are modeled from thermodynamical equilibria of mantle minerals and used to predict the moment of inertia, Love numbers, and tide-induced phase lag characterizing the signature of the internal structure in the gravity field. The viscoelasticity of the mantle is parameterized using an Andrade rheology. From the models considered here, the moment of inertia lies in the range of 0.327 to 0.342, corresponding to a core radius of 2900 to 3450 km. Viscoelasticity of the mantle strongly increases the potential Love number relative to previously published elastic models. Due to the anelasticity effects, we show that the possibility of a completely solid metal core inside Venus cannot be ruled out based on the available estimate of k2 from the Magellan mission (Konopliv and Yoder, 1996). A Love number k2 lower than 0.27 would indicate the presence of a fully solid iron core, while for larger values, solutions with an entirely or partially liquid core are possible. Precise determination of the Love numbers, k2 and h2, together with an estimate of the tidal phase lag, are required to determine the state and size of the core, as well as the composition and viscosity of the mantle.

  4. Present problems of the solar interior

    International Nuclear Information System (INIS)

    Roxburgh, I.W.

    1986-01-01

    The standard model of solar evolution is reviewed and a number of problems highlighted. A fundamental question is whether there is any mixing of matter in the central regions, since such mixing could radically alter the model of the present Sun and modify our understanding of the evolution of other stars. Standard models of solar evolution become unstable to /sup 3/He driven global oscillations at an age of 3 x 10/sup 8/ years and this may drive some mixing, even if this is not the case the finite amptitude limit of these oscillations is likely to produce modifications in the standard model. Convective overshooting at the bottom of the outer convective zone leads to an increased depth of this zone and small changes in the interior. It is pointed out that the young Sun had a /sup 12/C driven convective core whose extent and duration depends on the extend of overshooting. Such a core is likely to produce a magnetic field which will affect the internal dynamics. The internal rotation of the sun remains an enigma and absence of knowledge of any internal magnetic field makes it difficult to study the problem. Rotationally driven instabilities are ineffective in the central chemically inhomogeneous regions but may contribute to the inward diffusion of lithium from the convective zone. These and other problems are considered, but few solutions are proposed

  5. Magnetic field generations in planetary interiors

    International Nuclear Information System (INIS)

    Singh, R.N.

    1981-01-01

    One of the most fundamental properties of some better known planets is their internally generated magnetic field. A successful explanation of such magnetic fields in 'large hot planetary interiors' remains elusive. Starting from Sir Joseph Larmor's discussions of 'How could a rotating body such as Sun become a magnet' (1979) to present day general consensus that 'the existence of the geomagnetic field is a manifestation of a finite amplitude instability of the Earth's core', significant theoretical developments have taken place in this field. The essential ingredients of the successful theories are the presence of a rotating fluid core of large size having sufficiently high electrical conductivity and energy source to drive the convection. These theories use equations of Newton and Maxwell to generate the requisite kind of the magnetic and velocity fields in response to the preferred distribution of the energy sources. Studies before early seventies, were devoted, mainly, to resolve the kinematics of the problem, and have convincingly demonstrated the plausibility of regeneration action of the organised motion. However, the main problem of the dynamo-processes is yet in the early stages of development despite important contributions made by Soward and Busse. A review of some of these developments is presented. (author)

  6. The Prefabricated Interior Design Studio: An Exploration into the History and Sustainability of Interior Prefabrication

    Science.gov (United States)

    Schneiderman, Deborah; Freihoefer, Kara

    2013-01-01

    This article examines the integration of prefabrication into an interior design studio. A review of the literature revealed that while there is a paucity of categorical research focused on this subject, the subject is historically significant with an abundance of evidence regarding the prefabrication of the interior environment dating back…

  7. First principles studies of electron tunneling in proteins

    Science.gov (United States)

    Hayashi, Tomoyuki; Stuchebrukhov, Alexei A.

    2014-01-01

    A first principles study of electronic tunneling along the chain of seven Fe/S clusters in respiratory complex I, a key enzyme in the respiratory electron transport chain, is described. The broken-symmetry states of the Fe/S metal clusters calculated at both DFT and semi-empirical ZINDO levels were utilized to examine both the extremely weak electronic couplings between Fe/S clusters and the tunneling pathways, which provide a detailed atomistic-level description of the charge transfer process in the protein. One-electron tunneling approximation was found to hold within a reasonable accuracy, with only a moderate induced polarization of the core electrons. The method is demonstrated to be able to calculate accurately the coupling matrix elements as small as 10−4 cm−1. A distinct signature of the wave properties of electrons is observed as quantum interferences of multiple tunneling pathways. PMID:25383312

  8. Structural and Biochemical Studies of LysM Proteins

    DEFF Research Database (Denmark)

    Wong, Mei Mei Jaslyn Elizabeth

    2017-01-01

    . Most of the signalling components in the Nod factor signalling pathway have been identified through genetic approaches. The current symbiosis signalling model, however, lacks components that could link Nod factor perception at the plasma membrane to downstream responses, such as calcium influx and perinuclear calcium...... involved in peptidoglycan hydrolysis; the Cell Wall Lytic enzyme associated with cell Separation (CwlS) from Bacillus subtilis, and P60_Tth from Thermus thermopiles. Biochemical studies conducted on purified CwlS showed that multiple LysM modules function cooperatively to bind N-acetylglucosamine (NAG......-induced intermolecular dimerization was observed in the co-crystal structure of P60_2LysM and NAG6. Until today, this is the only structural evidence illustrating intermolecular dimerization of LysM proteins. Intermolecular dimerization of plant LysM receptor kinases (RK) has been proposed as a mechanism...

  9. Energetic frustrations in protein folding at residue resolution: a homologous simulation study of Im9 proteins.

    Directory of Open Access Journals (Sweden)

    Yunxiang Sun

    Full Text Available Energetic frustration is becoming an important topic for understanding the mechanisms of protein folding, which is a long-standing big biological problem usually investigated by the free energy landscape theory. Despite the significant advances in probing the effects of folding frustrations on the overall features of protein folding pathways and folding intermediates, detailed characterizations of folding frustrations at an atomic or residue level are still lacking. In addition, how and to what extent folding frustrations interact with protein topology in determining folding mechanisms remains unclear. In this paper, we tried to understand energetic frustrations in the context of protein topology structures or native-contact networks by comparing the energetic frustrations of five homologous Im9 alpha-helix proteins that share very similar topology structures but have a single hydrophilic-to-hydrophobic mutual mutation. The folding simulations were performed using a coarse-grained Gō-like model, while non-native hydrophobic interactions were introduced as energetic frustrations using a Lennard-Jones potential function. Energetic frustrations were then examined at residue level based on φ-value analyses of the transition state ensemble structures and mapped back to native-contact networks. Our calculations show that energetic frustrations have highly heterogeneous influences on the folding of the four helices of the examined structures depending on the local environment of the frustration centers. Also, the closer the introduced frustration is to the center of the native-contact network, the larger the changes in the protein folding. Our findings add a new dimension to the understanding of protein folding the topology determination in that energetic frustrations works closely with native-contact networks to affect the protein folding.

  10. Whey Protein Supplementation Enhances Whole Body Protein Metabolism and Performance Recovery after Resistance Exercise: A Double-Blind Crossover Study.

    Science.gov (United States)

    West, Daniel W D; Abou Sawan, Sidney; Mazzulla, Michael; Williamson, Eric; Moore, Daniel R

    2017-07-11

    No study has concurrently measured changes in free-living whole body protein metabolism and exercise performance during recovery from an acute bout of resistance exercise. We aimed to determine if whey protein ingestion enhances whole body net protein balance and recovery of exercise performance during overnight (10 h) and 24 h recovery after whole body resistance exercise in trained men. In a double-blind crossover design, 12 trained men (76 ± 8 kg, 24 ± 4 years old, 14% ± 5% body fat; means ± standard deviation (SD)) performed resistance exercise in the evening prior to consuming either 25 g of whey protein (PRO; MuscleTech 100% Whey) or an energy-matched placebo (CHO) immediately post-exercise (0 h), and again the following morning (~10 h of recovery). A third randomized trial, completed by the same participants, involving no exercise and no supplement served as a rested control trial (Rest). Participants ingested [ 15 N]glycine to determine whole body protein kinetics and net protein balance over 10 and 24 h of recovery. Performance was assessed pre-exercise and at 0, 10, and 24 h of recovery using a battery of tests. Net protein balance tended to improve in PRO ( P = 0.064; effect size (ES) = 0.61, PRO vs. CHO) during overnight recovery. Over 24 h, net balance was enhanced in PRO ( P = 0.036) but not in CHO ( P = 0.84; ES = 0.69, PRO vs. CHO), which was mediated primarily by a reduction in protein breakdown (PRO protein supplementation improved MVC (ES = 0.76), REP (ES = 0.44), and peak power (ES = 0.55). In conclusion, whey protein supplementation enhances whole body anabolism, and may improve acute recovery of exercise performance after a strenuous bout of resistance exercise.

  11. Interior design. Mastering the master plan.

    Science.gov (United States)

    Mesbah, C E

    1995-10-01

    Reflecting on the results of the survey, this proposed interior design master planning process addresses the concerns and issues of both CEOs and facility managers in ways that focus on problem-solving strategies and methods. Use of the interior design master plan process further promotes the goals and outcomes expressed in the survey by both groups. These include enhanced facility image, the efficient selection of finishes and furnishings, continuity despite staff changes, and overall savings in both costs and time. The interior design master plan allows administrators and facility managers to anticipate changes resulting from the restructuring of health care delivery. The administrators and facility managers are then able to respond in ways that manage those changes in the flexible and cost-effective manner they are striving for. This framework permits staff members to concentrate their time and energy on the care of their patients--which is, after all, what it's all about.

  12. Inequivalence of interior and exterior dynamical problems

    International Nuclear Information System (INIS)

    Santilli, R.M.

    1991-09-01

    We begin a series of notes with the review of the historical distinction by Lagrange, Hamilton, Jacobi and other Founding Fathers of analytic dynamics, between the exteriordynamical problem, consisting of motion in vacuum under action-at-a-distance interactions, and the interior dynamical problem, consisting of motion within a resistive medium with the additional presence of contact, nonlinear, nonlocal and nonhamiltonian internal forces. After recalling some of the historical reasons that led to the contemporary, virtually complete restriction of research to the exterior problem, we show that the interior dynamical problem cannot be reduced to the exterior one. This establishes the open character of the central objective of these notes: the identification of the space-time symmetries and relativities that are applicable to interior, nonlinear, nonlocal and nonhamiltonian systems. (author). 29 refs

  13. Penerapan Psikologi Desain pada Elemen Desain Interior

    Directory of Open Access Journals (Sweden)

    Budi Setiawan

    2014-10-01

    Full Text Available One of main interior designer’s assignments is to solve the problem within the facility. Problems may occur because the activities of design decision had done or will be done on the facility are not maximized. This problem can be reduced by rethinking the design through psychology design. Utilizing psychology design will help designer decide a better judgment of objects that affects the person using it in routine. The example of interior objects is wall, door, floor, color, and other elements of interior. Desk research method was used to support this article trough data collection from books and other professional institution websites. At the end, the conclusion of this article does not directly impact the result since it took time to persuade judgment of the user, but positively it will construct designer to rethink the design object.  

  14. Concrete as secondary containment for interior wall embedded waste lines

    International Nuclear Information System (INIS)

    Porter, C.L.

    1993-01-01

    Throughout the Department of Energy (DOE) complex are numerous facilities that handle hazardous waste solutions. Secondary containment of tank systems and their ancillary piping is a major concern for existing facilities. The Idaho Division of Environmental Quality was petitioned in 1990 for an Equivalent Device determination regarding secondary containment of waste lines embedded in interior concrete walls. The petition was granted, however it expires in 1996. To address the secondary containment issue, additional studies were undertaken. One study verified the hypothesis that an interior wall pipe leak would follow the path of least resistance through the naturally occurring void found below a rigidly supported pipe and pass into an adjacent room where detection could occur, before any significant deterioration of the concrete takes place. Other tests demonstrated that with acidic waste solutions rebar and cold joints are not an accelerated path to the environment. The results from these latest studies confirm that the subject configuration meets all the requirements of secondary containment

  15. Co-operative intra-protein structural response due to protein-protein complexation revealed through thermodynamic quantification: study of MDM2-p53 binding.

    Science.gov (United States)

    Samanta, Sudipta; Mukherjee, Sanchita

    2017-10-01

    The p53 protein activation protects the organism from propagation of cells with damaged DNA having oncogenic mutations. In normal cells, activity of p53 is controlled by interaction with MDM2. The well understood p53-MDM2 interaction facilitates design of ligands that could potentially disrupt or prevent the complexation owing to its emergence as an important objective for cancer therapy. However, thermodynamic quantification of the p53-peptide induced structural changes of the MDM2-protein remains an area to be explored. This study attempts to understand the conformational free energy and entropy costs due to this complex formation from the histograms of dihedral angles generated from molecular dynamics simulations. Residue-specific quantification illustrates that, hydrophobic residues of the protein contribute maximum to the conformational thermodynamic changes. Thermodynamic quantification of structural changes of the protein unfold the fact that, p53 binding provides a source of inter-element cooperativity among the protein secondary structural elements, where the highest affected structural elements (α2 and α4) found at the binding site of the protein affects faraway structural elements (β1 and Loop1) of the protein. The communication perhaps involves water mediated hydrogen bonded network formation. Further, we infer that in inhibitory F19A mutation of P53, though Phe19 is important in the recognition process, it has less prominent contribution in the stability of the complex. Collectively, this study provides vivid microscopic understanding of the interaction within the protein complex along with exploring mutation sites, which will contribute further to engineer the protein function and binding affinity.

  16. Co-operative intra-protein structural response due to protein-protein complexation revealed through thermodynamic quantification: study of MDM2-p53 binding

    Science.gov (United States)

    Samanta, Sudipta; Mukherjee, Sanchita

    2017-10-01

    The p53 protein activation protects the organism from propagation of cells with damaged DNA having oncogenic mutations. In normal cells, activity of p53 is controlled by interaction with MDM2. The well understood p53-MDM2 interaction facilitates design of ligands that could potentially disrupt or prevent the complexation owing to its emergence as an important objective for cancer therapy. However, thermodynamic quantification of the p53-peptide induced structural changes of the MDM2-protein remains an area to be explored. This study attempts to understand the conformational free energy and entropy costs due to this complex formation from the histograms of dihedral angles generated from molecular dynamics simulations. Residue-specific quantification illustrates that, hydrophobic residues of the protein contribute maximum to the conformational thermodynamic changes. Thermodynamic quantification of structural changes of the protein unfold the fact that, p53 binding provides a source of inter-element cooperativity among the protein secondary structural elements, where the highest affected structural elements (α2 and α4) found at the binding site of the protein affects faraway structural elements (β1 and Loop1) of the protein. The communication perhaps involves water mediated hydrogen bonded network formation. Further, we infer that in inhibitory F19A mutation of P53, though Phe19 is important in the recognition process, it has less prominent contribution in the stability of the complex. Collectively, this study provides vivid microscopic understanding of the interaction within the protein complex along with exploring mutation sites, which will contribute further to engineer the protein function and binding affinity.

  17. Interior point algorithms theory and analysis

    CERN Document Server

    Ye, Yinyu

    2011-01-01

    The first comprehensive review of the theory and practice of one of today's most powerful optimization techniques. The explosive growth of research into and development of interior point algorithms over the past two decades has significantly improved the complexity of linear programming and yielded some of today's most sophisticated computing techniques. This book offers a comprehensive and thorough treatment of the theory, analysis, and implementation of this powerful computational tool. Interior Point Algorithms provides detailed coverage of all basic and advanced aspects of the subject.

  18. Perancangan Interior Museum Film Indonesia Di Surabaya

    OpenAIRE

    Limantoro, Lim Renawati

    2013-01-01

    Surabaya is a city with a thriving cultural variety with a pluralistic society where people in Surabaya is more modern that easy to accept new things that developed in the community. Museum is a public place so that the necessary interior educative and informative and can be used as a sports-themed Indonesian films. The purpose of designing the interior of the film museum in Surabaya this is a venue to preserve Indonesian films and give knowledge to the people of Surabaya on the world of cine...

  19. Possibilities to improve the aircraft interior comfort experience.

    Science.gov (United States)

    Vink, P; Bazley, C; Kamp, I; Blok, M

    2012-03-01

    Comfort plays an increasingly important role in the interior design of airplanes. Although ample research has been conducted on airplane design technology, only a small amount of public scientific information is available addressing the passenger's opinion. In this study, more than 10,000 internet trip reports and 153 passenger interviews were used to gather opinions about aspects which need to be improved in order to design a more comfortable aircraft interior. The results show clear relationships between comfort and legroom, hygiene, crew attention and seat/personal space. Passengers rate the newer planes significantly better than older ones, indicating that attention to design for comfort has proven effective. The study also shows that rude flight attendants and bad hygiene reduce the comfort experience drastically and that a high comfort rating is related to higher "fly again" values. Copyright © 2011 Elsevier Ltd and The Ergonomics Society. All rights reserved.

  20. Glucose-neopentyl glycol (GNG) amphiphiles for membrane protein study

    DEFF Research Database (Denmark)

    Chae, Pil Seok; Rana, Rohini R; Gotfryd, Kamil

    2013-01-01

    The development of a new class of surfactants for membrane protein manipulation, "GNG amphiphiles", is reported. These amphiphiles display promising behavior for membrane proteins, as demonstrated recently by the high resolution structure of a sodium-pumping pyrophosphatase reported by Kellosalo ...

  1. Glucose-neopentyl glycol (GNG) amphiphiles for membrane protein study.

    Science.gov (United States)

    Chae, Pil Seok; Rana, Rohini R; Gotfryd, Kamil; Rasmussen, Søren G F; Kruse, Andrew C; Cho, Kyung Ho; Capaldi, Stefano; Carlsson, Emil; Kobilka, Brian; Loland, Claus J; Gether, Ulrik; Banerjee, Surajit; Byrne, Bernadette; Lee, John K; Gellman, Samuel H

    2013-03-21

    The development of a new class of surfactants for membrane protein manipulation, "GNG amphiphiles", is reported. These amphiphiles display promising behavior for membrane proteins, as demonstrated recently by the high resolution structure of a sodium-pumping pyrophosphatase reported by Kellosalo et al. (Science, 2012, 337, 473).

  2. Studies on new antifreeze protein from the psychrophilic diatom ...

    African Journals Online (AJOL)

    Administrator

    2011-09-12

    Sep 12, 2011 ... 27-kDa protein modified with His-tag. According to bioinformatics data, a comparison ... for plant biotechnology application on tomato. MATERIALS AND METHODS. The ESTs library was ... specific expression in tomato as previously described (Deng, 2003). Sequence analysis and prediction of protein ...

  3. Alpha-1-antitrypsin studies: canine serum and canine surfactant protein

    International Nuclear Information System (INIS)

    Tuttle, W.C.; Slauson, D.O.; Dahlstrom, M.; Gorman, C.

    1974-01-01

    Canine serum alpha-1-antitrypsin was isolated by gel filtration and affinity chromatography and characterized by polyacrylamide gel electrophoresis and immunoelectrophoresis. Measurement of the trypsin inhibitory capacity of the separated protein indicated a ninefold concentration of functional trypsin inhibitor during the isolation procedure. Electrophoresis demonstrated the presence of a single protein with alpha-globulin mobility and a molecular weight near that of human alpha-1-antitrypsin. The trypsin inhibitory capacity of pulmonary surfactant protein from five Beagle dogs was measured, related to total surfactant protein concentration, and compared with similar measurements on whole serum from the same animals. Results indicated a variable concentration of trypsin inhibitor in the canine pulmonary surfactant protein. However, the concentration in the surfactant protein was always significantly higher than that in the corresponding serum sample. Preliminary experiments designed to separate the trypsin inhibitory fraction(s) from the other surfactant proteins by gel filtration chromatography indicated that the trypsin inhibitor was probably a single protein with a molecular weight near that of alpha-1-antitrypsin. (U.S.)

  4. Study of allosteric communications in chimeric two-domain proteins

    Czech Academy of Sciences Publication Activity Database

    Boušová, Kristýna

    2017-01-01

    Roč. 26, S1 (2017), s. 74 ISSN 0961-8368. [Annual Symposium of the Protein Society /31./. 24.07.2017-27.07.2017, Montreal] Institutional support: RVO:61388963 Keywords : protein domains * chimeric structures Subject RIV: CE - Biochemistry

  5. Comparative study of C-Reactive Protein and other biochemical ...

    African Journals Online (AJOL)

    Serum levels of C-reactive proteins (CRP), Alanine aminotransferase (ALT), Aspartate aminotransferase (AST), total protein, albumin and globulins were investigated using high sensitivity Immunoturbidometric and colorimetric techniques in individuals with hepatitis (n=50), Malaria (n=50) and 40 control subjects in age ...

  6. A comparative study on the radioactive labelling of proteins

    International Nuclear Information System (INIS)

    Koch, G.K.; Heertje, I.; Stijn, F. van

    1977-01-01

    The main methods in protein labelling are exchange labelling, iodination, acylation and alkylation. The universal application of the techniques is evaluated by a number of criteria, derived from the demand that labelled proteins should be as identical to the native ones as possible. From our experiences on labelling methods it is concluded that reductive methylation meets most requirements. (orig.) [de

  7. Immunoelectrophoretic studies on pig intestinal brush border proteins

    DEFF Research Database (Denmark)

    Danielsen, Erik Michael; Sjöström, H; Norén, O

    1977-01-01

    Brush borders were prepared from pig intestinal mucosa and the membrane proteins solubilized with either Triton X-100 or papain. Proteins, thus released, were used as antigens to raise antisera in rabbits. The immunoglobulin G fractions were isolated and shown by the double layer immunofluorescence...

  8. Using a verbal prompt to increase protein consumption in a hospital setting: a field study

    NARCIS (Netherlands)

    Zanden, van der L.D.T.; Essen, van H.; Kleef, van E.; Wijk, de R.A.; Trijp, van J.C.M.

    2015-01-01

    Background: Sufficient protein intake among hospitalized patients may contribute to faster recovery and a decrease in healthcare costs. Nevertheless, hospitalized patients are often found to consume too little protein. This field study explored the success of a small, inexpensive intervention

  9. Prevention of Reservoir Interior Discoloration

    Energy Technology Data Exchange (ETDEWEB)

    Arnold, K.F.

    2001-04-03

    Contamination is anathema in reservoir production. Some of the contamination is a result of welding and some appears after welding but existed before. Oxygen was documented to be a major contributor to discoloration in welding. This study demonstrates that it can be controlled and that some of the informal cleaning processes contribute to contamination.

  10. Interior design criteria for successful hospital patient rooms

    OpenAIRE

    Bilir, Seda

    1997-01-01

    Ankara : The Department of Interior Architecture and Environmental Design and Institute of Fine Arts of Bilkent University, 1997. Thesis (Master's) -- Bilkent University, 1997. Includes bibliographical references leaves 94-99 In this study, the design requirements of hospital acute-care patient rooms, which support the recovery and well-being of the patients, are examined. Patients' psycho-spatial needs which may be complementary to the healing effects of the medical treatme...

  11. Exact interior solutions in 2 + 1-dimensional spacetime

    Energy Technology Data Exchange (ETDEWEB)

    Rahaman, Farook; Bhar, Piyali [Jadavpur University, Department of Mathematics, Kolkata, West Bengal (India); Biswas, Ritabrata [Indian Institute of Engineering Sceince and Technology Shibpur, Howrah, West Bengal (India); Usmani, A.A. [Aligarh Muslim University, Department of Physics, Aligarh, Uttar Pradesh (India)

    2014-04-15

    We provide a new class of exact solutions for the interior in 2 + 1-dimensional spacetime. The solutions obtained for the perfect fluid model both with and without cosmological constant (Λ) are found to be regular and singularity free. It assumes very simple analytical forms that help us to study the various physical properties of the configuration. Solutions without Λ are found to be physically acceptable. (orig.)

  12. Studies to Prevent Degradation of Recombinant Fc-Fusion Protein Expressed in Mammalian Cell Line and Protein Characterization

    Directory of Open Access Journals (Sweden)

    Sanjukta Chakrabarti

    2016-06-01

    Full Text Available Clipping of recombinant proteins is a major issue in animal cell cultures. A recombinant Fc-fusion protein, VEGFR1(D1–D3-Fc expressed in CHOK1SV GS-KO cells was observed to be undergoing clippings in lab scale cultures. Partial cleaving of expressed protein initiated early on in cell culture and was observed to increase over time in culture and also on storage. In this study, a few parameters were explored in a bid to inhibit clipping in the fusion protein The effects of culture temperature, duration of culture, the addition of an anti-clumping agent, ferric citrate and use of protease inhibitor cocktail on inhibition of proteolysis of the Fc fusion were studied. Lowering of culture temperature from 37 to 30 °C alone appears to be the best solution for reducing protein degradation from the quality, cost and regulatory points of view. The obtained Fc protein was characterized and found to be in its stable folded state, exhibiting a high affinity for its ligand and also biological and functional activities.

  13. Mercury's magnetic field and interior

    International Nuclear Information System (INIS)

    Connerney, J.E.P.; Ness, N.F.

    1988-01-01

    The magnetic-field data collected on Mercury by the Mariner-10 spacecraft present substantial evidence for an intrinsic global magnetic field. However, studies of Mercury's thermal evolution show that it is most likely that the inner core region of Mercury solidified or froze early in the planet's history. Thus, the explanation of Mercury's magnetic field in the framework of the traditional planetary dynamo is less than certain

  14. Climatology of the interior Columbia River basin.

    Science.gov (United States)

    Sue A. Ferguson

    1999-01-01

    This work describes climate means and trends in each of three major ecological zones and 13 ecological reporting units in the interior Columbia River basin. Widely differing climates help define each major zone and reporting unit, the pattern of which is controlled by three competing air masses: marine, continental, and arctic. Paleoclimatic evidence and historical...

  15. resonant inverter supplied interior permanent magnet (ipm)

    African Journals Online (AJOL)

    user

    [5] Zhenyue Hong, “DC-voltage link resonant inverters”, Department of Electrical and. Electronic Engineering University of. Canterbury, New Zealand. [6] Kalyan Kumar Halder, Naruttam Kumar Roy and B.C. Ghosh, “Position Sensorless. Control for an Interior Permanent Magnet. Synchronous Motor SVM Drive with ANN.

  16. Discussion on interior greening decoration of residence

    Science.gov (United States)

    Tong, ZhiNeng

    2018-02-01

    Green plants bring endless natural energy into the room. This paper introduces the functions, principles and functions of indoor greening decoration from different angles. Its conclusion is that it has become an important measure to improve the living environment of the people, and through the interior greening decoration to create a harmonious living space of architecture, human and nature.

  17. Calidad del aire interior en las escuelas

    Science.gov (United States)

    EPA ha desarrollado el Programa de Herramientas de Calidad del Aire Interior para las Escuelas para reducir la exposición a los contaminantes ambientales en las mismas a través de la adopción voluntaria de las prácticas para manejar la calidad del aire int

  18. Speed of sound in the solar interior

    International Nuclear Information System (INIS)

    Christensen-Dalsgaard, J.; Rhodes, E.J. Jr.

    1985-01-01

    Frequencies of solar 5-min oscillations can be used to determine directly the sound speed of the solar interior. The determination described does not depend on a solar model, but relies only on a simple asymptotic description of the oscillations in terms of trapped acoustic waves. (author)

  19. Juno's first peek at Jupiter's interior

    Science.gov (United States)

    Guillot, Tristan; Miguel, Yamila; Hubbard, William B.; Kaspi, Yohai; Reese, Daniel; Helled, Ravit; Galanti, Eli; Militzer, Burkhard; Wahl, Sean; Folkner, William M.; Anderson, John; Iess, Luciano; Durante, Daniele; Parisi, Marzia; Stevenson, David J.

    2017-04-01

    The first orbits of Juno around Jupiter have led to a considerable improvement in the measurement of the planet's even gravitational moments. We will discuss how this leads to better constraints on jovian interior models, and how internal differential rotation and equations of state play an important part in the analysis.

  20. Wall grid structure for interior scene synthesis

    KAUST Repository

    Xu, Wenzhuo; Wang, Bin; Yan, Dongming

    2015-01-01

    We present a system for automatically synthesizing a diverse set of semantically valid, and well-arranged 3D interior scenes for a given empty room shape. Unlike existing work on layout synthesis, that typically knows potentially needed 3D models

  1. 24 CFR 3280.107 - Interior privacy.

    Science.gov (United States)

    2010-04-01

    ... 24 Housing and Urban Development 5 2010-04-01 2010-04-01 false Interior privacy. 3280.107 Section 3280.107 Housing and Urban Development Regulations Relating to Housing and Urban Development (Continued... privacy. Bathroom and toilet compartment doors shall be equipped with a privacy lock. ...

  2. Structural studies of human glioma pathogenesis-related protein 1

    Energy Technology Data Exchange (ETDEWEB)

    Asojo, Oluwatoyin A., E-mail: oasojo@unmc.edu [College of Medicine, Nebraska Medical Center, Omaha, NE 68198-6495 (United States); Koski, Raymond A.; Bonafé, Nathalie [L2 Diagnostics LLC, 300 George Street, New Haven, CT 06511 (United States); College of Medicine, Nebraska Medical Center, Omaha, NE 68198-6495 (United States)

    2011-10-01

    Structural analysis of a truncated soluble domain of human glioma pathogenesis-related protein 1, a membrane protein implicated in the proliferation of aggressive brain cancer, is presented. Human glioma pathogenesis-related protein 1 (GLIPR1) is a membrane protein that is highly upregulated in brain cancers but is barely detectable in normal brain tissue. GLIPR1 is composed of a signal peptide that directs its secretion, a conserved cysteine-rich CAP (cysteine-rich secretory proteins, antigen 5 and pathogenesis-related 1 proteins) domain and a transmembrane domain. GLIPR1 is currently being investigated as a candidate for prostate cancer gene therapy and for glioblastoma targeted therapy. Crystal structures of a truncated soluble domain of the human GLIPR1 protein (sGLIPR1) solved by molecular replacement using a truncated polyalanine search model of the CAP domain of stecrisp, a snake-venom cysteine-rich secretory protein (CRISP), are presented. The correct molecular-replacement solution could only be obtained by removing all loops from the search model. The native structure was refined to 1.85 Å resolution and that of a Zn{sup 2+} complex was refined to 2.2 Å resolution. The latter structure revealed that the putative binding cavity coordinates Zn{sup 2+} similarly to snake-venom CRISPs, which are involved in Zn{sup 2+}-dependent mechanisms of inflammatory modulation. Both sGLIPR1 structures have extensive flexible loop/turn regions and unique charge distributions that were not observed in any of the previously reported CAP protein structures. A model is also proposed for the structure of full-length membrane-bound GLIPR1.

  3. The Barriers and Causes of Building Information Modelling Usage for Interior Design Industry

    Science.gov (United States)

    Hamid, A. B. Abd; Taib, M. Z. Mohd; Razak, A. H. N. Abdul; Embi, M. R.

    2017-12-01

    Building Information Modeling (BIM) has since developed alongside the improvement in the construction industry, purposely to simulate the design, management, construction and documentation. It facilitates and monitors the construction through visualization and emphasizes on various inputs to virtually design and construct a building using specific software. This study aims to identify and elaborate barriers of BIM usage in interior design industry in Malaysia. This study is initiated with a pilot survey utilising sixteen respondents that has been randomly chosen. Respondents are attached with interior design firms that are registered by Lembaga Arkitek Malaysia (LAM). The research findings are expected to provide significant information to encourage BIM adoption among interior design firms.

  4. The synthesis of recombinant membrane proteins in yeast for structural studies.

    Science.gov (United States)

    Routledge, Sarah J; Mikaliunaite, Lina; Patel, Anjana; Clare, Michelle; Cartwright, Stephanie P; Bawa, Zharain; Wilks, Martin D B; Low, Floren; Hardy, David; Rothnie, Alice J; Bill, Roslyn M

    2016-02-15

    Historically, recombinant membrane protein production has been a major challenge meaning that many fewer membrane protein structures have been published than those of soluble proteins. However, there has been a recent, almost exponential increase in the number of membrane protein structures being deposited in the Protein Data Bank. This suggests that empirical methods are now available that can ensure the required protein supply for these difficult targets. This review focuses on methods that are available for protein production in yeast, which is an important source of recombinant eukaryotic membrane proteins. We provide an overview of approaches to optimize the expression plasmid, host cell and culture conditions, as well as the extraction and purification of functional protein for crystallization trials in preparation for structural studies. Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.

  5. AFM study of adsorption of protein A on a poly(dimethylsiloxane) surface

    International Nuclear Information System (INIS)

    Yu Ling; Lu Zhisong; Gan Ye; Liu Yingshuai; Li, C M

    2009-01-01

    In this paper, the morphology and kinetics of adsorption of protein A on a PDMS surface is studied by AFM. The results of effects of pH, protein concentration and contact time of the adsorption reveal that the morphology of adsorbed protein A is significantly affected by pH and adsorbed surface concentration, in which the pH away from the isoelectric point (IEP) of protein A could produce electrical repulsion to change the protein conformation, while the high adsorbed surface protein volume results in molecular networks. Protein A can form an adsorbed protein film on PDMS with a maximum volume of 2.45 x 10 -3 μm 3 . This work enhances our fundamental understanding of protein A adsorption on PDMS, a frequently used substrate component in miniaturized immunoassay devices.

  6. Numerical simulation of effect of laser nonuniformity in interior interface

    International Nuclear Information System (INIS)

    Yu Xiaojin; Wu Junfeng; Ye Wenhua

    2007-01-01

    Using the LARED-S code and referring to the NIF direct-drive DT ignition target, the effect of laser nonuniformity on the interior interface in direct-drive spherical implosion with high convergence ratio was numerically studied. The two-dimensional results show that the implosion with high convergence ratio is sensitive to the nonuniformity of driving laser, and the growth of hydrodynamic instability on interior interface destroys the symmetric-drive and reduces the volume of central hot spot observably. Taking the limit that perturbation amplitude is equal to 1/3 radius of central hot spot, the simulation also gives that the requirements for the laser uniformity for different mode number(less than 12) on simple physical model are between 2.5% -0.25%, and the modes between 8-10 have the most rigorous requirement which is about 0.25%. (authors)

  7. Numerical simulation of interior flow field of nuclear model pump

    International Nuclear Information System (INIS)

    Wang Chunlin; Peng Na; Kang Can; Zhao Baitong; Zhang Hao

    2009-01-01

    Reynolds time-averaged N-S equations and the standard k-ε turbulent model were adopted, and three-dimensional non-structural of tetrahedral mesh division was used for modeling. Multiple reference frame model of rotating fluid mechanical model was used, under the design condition, the three-dimensional incompressible turbulent flow of nuclear model pump was simulated, and the results preferably post the characteristics of the interior flow field. This paper first analyzes the total pressure and velocity distribution in the flow field, and then describes the interior flow field characteristics of each part such as the impeller, diffuser and spherical shell, and also discusses the reasons that cause these characteristics. The study results can be used to estimate the performance of nuclear model pump, and will provide some useful references for its hydraulic optimized design. (authors)

  8. The interactive optical fiber fabrics for smart interior environment

    Science.gov (United States)

    Bai, Z. Q.; Dong, A. H.; Du, Z. Y.; Tan, J.

    2017-10-01

    Comparing to conventional textiles, interactive photonic textiles can emit light, present different colors, change the surface pattern and can interact with users. They are particularly suitable for decorative purpose. Home furniture is one possible application [1]. With attractive illumination and color effect, the photonic textiles can also be used in hotels, exhibition halls, restaurants and many other circumstances to enhance the interior environment. However, the functionality of the interactive photonic textile for interior purpose is still underdeveloped, since there are still sever challenges about how to improve the usability and functionality of the interactive textile. This project aims to study how to improve the interactive function of photonic textiles, which can enhance the well-being of the end-user. In the end, a color-changeable interactive cushion which can detect the main primary particulate matter (PM) 2.5 was developed.

  9. Aircraft Interior Noise Control Using Distributed Piezoelectric Actuators

    Science.gov (United States)

    Sun, Jian Q.

    1996-01-01

    Developing a control system that can reduce the noise and structural vibration at the same time is an important task. This talk presents one possible technical approach for accomplishing this task. The target application of the research is for aircraft interior noise control. The emphasis of the present approach is not on control strategies, but rather on the design of actuators for the control system. In the talk, a theory of distributed piezoelectric actuators is introduced. A uniform cylindrical shell is taken as a simplified model of fuselage structures to illustrate the effectiveness of the design theory. The actuators developed are such that they can reduce the tonal structural vibration and interior noise in a wide range of frequencies. Extensive computer simulations have been done to study various aspects of the design theory. Experiments have also been conducted and the test results strongly support the theoretical development.

  10. In silico study of protein to protein interaction analysis of AMP-activated protein kinase and mitochondrial activity in three different farm animal species

    Science.gov (United States)

    Prastowo, S.; Widyas, N.

    2018-03-01

    AMP-activated protein kinase (AMPK) is cellular energy censor which works based on ATP and AMP concentration. This protein interacts with mitochondria in determine its activity to generate energy for cell metabolism purposes. For that, this paper aims to compare the protein to protein interaction of AMPK and mitochondrial activity genes in the metabolism of known animal farm (domesticated) that are cattle (Bos taurus), pig (Sus scrofa) and chicken (Gallus gallus). In silico study was done using STRING V.10 as prominent protein interaction database, followed with biological function comparison in KEGG PATHWAY database. Set of genes (12 in total) were used as input analysis that are PRKAA1, PRKAA2, PRKAB1, PRKAB2, PRKAG1, PRKAG2, PRKAG3, PPARGC1, ACC, CPT1B, NRF2 and SOD. The first 7 genes belong to gene in AMPK family, while the last 5 belong to mitochondrial activity genes. The protein interaction result shows 11, 8 and 5 metabolism pathways in Bos taurus, Sus scrofa and Gallus gallus, respectively. The top pathway in Bos taurus is AMPK signaling pathway (10 genes), Sus scrofa is Adipocytokine signaling pathway (8 genes) and Gallus gallus is FoxO signaling pathway (5 genes). Moreover, the common pathways found in those 3 species are Adipocytokine signaling pathway, Insulin signaling pathway and FoxO signaling pathway. Genes clustered in Adipocytokine and Insulin signaling pathway are PRKAA2, PPARGC1A, PRKAB1 and PRKAG2. While, in FoxO signaling pathway are PRKAA2, PRKAB1, PRKAG2. According to that, we found PRKAA2, PRKAB1 and PRKAG2 are the common genes. Based on the bioinformatics analysis, we can demonstrate that protein to protein interaction shows distinct different of metabolism in different species. However, further validation is needed to give a clear explanation.

  11. MOLECULAR DOCKING AND DYNAMICS STUDIES ON THE PROTEIN-PROTEIN INTERACTIONS OF ELECTRICALLY ACTIVE PILIN NANOWIRES OF GEOBACTER SULFURREDUCENS.

    Directory of Open Access Journals (Sweden)

    D. Jeya Sundara Sharmila1 *

    2017-06-01

    Full Text Available Molecular interactions are key aspects in biological recognitions applicable in nano/micro systems. Bacterial nanowires are pilus filament based structures that can conduct electrons. The transport of electron is proposed to be facilitated by filamentous fibers made up of polymeric assemblies of proteins called pilin. Geobacter sulfurreducens is capable of delivering electrons through extracellular electron transport (EET by employing conductive nanowires, which are pilin proteins composed of type IV subunit PilA. Protein-protein interactions play an important role in the stabilization of the pilin nanowire assembly complex and it contains transmembrane (TM domain. In current study, protein-protein docking and multiple molecular dynamic (MD simulations were performed to understand the binding mode of pilin nanowires. The MD result explains the conformational behavior and folding of pilin nanowires in water environment in different time scale duration 20, 5, 5, 10 and 20ns (total of 60ns. Direct hydrogen bonds and water mediated hydrogen bonds that play a crucial role during the simulation were investigated. The conformational state, folding, end-toend distance profile and hydrogen bonding behavior had indicated that the Geobacter sulfurreducens pilin nanowires have electrical conductivity properties.

  12. High Resolution NMR Studies of Encapsulated Proteins In Liquid Ethane

    Science.gov (United States)

    Peterson, Ronald W.; Lefebvre, Brian G.; Wand, A. Joshua

    2005-01-01

    Many of the difficulties presented by large, aggregation-prone, and membrane proteins to modern solution NMR spectroscopy can be alleviated by actively seeking to increase the effective rate of molecular reorientation. An emerging approach involves encapsulating the protein of interest within the protective shell of a reverse micelle, and dissolving the resulting particle in a low viscosity fluid, such as the short chain alkanes. Here we present the encapsulation of proteins with high structural fidelity within reverse micelles dissolved in liquid ethane. The addition of appropriate co-surfactants can significantly reduce the pressure required for successful encapsulation. At these reduced pressures, the viscosity of the ethane solution is low enough to provide sufficiently rapid molecular reorientation to significantly lengthen the spin-spin NMR relaxation times of the encapsulated protein. PMID:16028922

  13. Gas phase absorption studies of photoactive yellow protein chromophore derivatives.

    Science.gov (United States)

    Rocha-Rinza, Toms; Christiansen, Ove; Rajput, Jyoti; Gopalan, Aravind; Rahbek, Dennis B; Andersen, Lars H; Bochenkova, Anastasia V; Granovsky, Alexander A; Bravaya, Ksenia B; Nemukhin, Alexander V; Christiansen, Kasper Lincke; Nielsen, Mogens Brøndsted

    2009-08-27

    Photoabsorption spectra of deprotonated trans p-coumaric acid and two of its methyl substituted derivatives have been studied in gas phase both experimentally and theoretically. We have focused on the spectroscopic effect of the location of the two possible deprotonation sites on the trans p-coumaric acid which originate to either a phenoxide or a carboxylate. Surprisingly, the three chromophores were found to have the same absorption maximum at 430 nm, in spite of having different deprotonation positions. However, the absorption of the chromophore in polar solution is substantially different for the distinct deprotonation locations. We also report on the time scales and pathways of relaxation after photoexcitation for the three photoactive yellow protein chromophore derivatives. As a result of these experiments, we could detect the phenoxide isomer within the deprotonated trans p-coumaric acid in gas phase; however, the occurrence of the carboxylate is uncertain. Several computational methods were used simultaneously to provide insights and assistance in the interpretation of our experimental results. The calculated excitation energies S(0)-S(1) are in good agreement with experiment for those systems having a negative charge on a phenoxide moiety. Although our augmented multiconfigurational quasidegenerate perturbation theory calculations agree with experiment in the description of the absorption spectrum of anions with a carboxylate functional group, there are some puzzling disagreements between experiment and some calculational methods in the description of these systems.

  14. Qualitative and quantitative assessment of interior moisture buffering by enclosures

    DEFF Research Database (Denmark)

    Janssen, Hans; Roels, Staf

    2009-01-01

    The significance of interior humidity in attaining sustainable, durable, healthy and comfortable buildings is increasingly recognised. Given their significant interaction, interior humidity appraisals need a qualitative and/or quantitative assessment of interior moisture buffering. While the effe......The significance of interior humidity in attaining sustainable, durable, healthy and comfortable buildings is increasingly recognised. Given their significant interaction, interior humidity appraisals need a qualitative and/or quantitative assessment of interior moisture buffering. While...... the effective moisture penetration depth and effective capacitance models allow quantified assessment, their reliance on the ‘moisture penetration depth’ necessitates comprehensive material properties and hampers their application to multi-dimensional interior objects. On the other hand, while various recently...... an alternative basis for quantitative evaluation of interior moisture buffering by the effective moisture penetration depth and effective capacitance models. The presented methodology uses simple and fast measurements only and can also be applied to multimaterial and/or multidimensional interior elements....

  15. Surface Passivation for Single-molecule Protein Studies

    Science.gov (United States)

    Chandradoss, Stanley D.; Haagsma, Anna C.; Lee, Young Kwang; Hwang, Jae-Ho; Nam, Jwa-Min; Joo, Chirlmin

    2014-01-01

    Single-molecule fluorescence spectroscopy has proven to be instrumental in understanding a wide range of biological phenomena at the nanoscale. Important examples of what this technique can yield to biological sciences are the mechanistic insights on protein-protein and protein-nucleic acid interactions. When interactions of proteins are probed at the single-molecule level, the proteins or their substrates are often immobilized on a glass surface, which allows for a long-term observation. This immobilization scheme may introduce unwanted surface artifacts. Therefore, it is essential to passivate the glass surface to make it inert. Surface coating using polyethylene glycol (PEG) stands out for its high performance in preventing proteins from non-specifically interacting with a glass surface. However, the polymer coating procedure is difficult, due to the complication arising from a series of surface treatments and the stringent requirement that a surface needs to be free of any fluorescent molecules at the end of the procedure. Here, we provide a robust protocol with step-by-step instructions. It covers surface cleaning including piranha etching, surface functionalization with amine groups, and finally PEG coating. To obtain a high density of a PEG layer, we introduce a new strategy of treating the surface with PEG molecules over two rounds, which remarkably improves the quality of passivation. We provide representative results as well as practical advice for each critical step so that anyone can achieve the high quality surface passivation. PMID:24797261

  16. Dietary protein and risk of hypertension in a Dutch older population: the Rotterdam Study

    NARCIS (Netherlands)

    Altorf-van der Kuil, W.; Engberink, M.F.; Rooij, van F.J.A.; Hofman, A.; Veer, van 't P.; Witteman, J.C.M.; Geleijnse, J.M.

    2010-01-01

    AB Background: Several observational studies suggest an inverse association of protein with blood pressure (BP). However, little is known about the role of dietary protein from specific sources in BP. Method: We examined the relation between several types of dietary protein (total, plant, animal,

  17. Grain protein concentration and harvestable protein under future climate conditions. A study of 108 spring barley accessions

    DEFF Research Database (Denmark)

    Ingvordsen, Cathrine Heinz; Gislum, René; Jørgensen, Johannes Ravn

    2016-01-01

    In the present study a set of 108 spring barley (H. vulgare L.) accessions were cultivated under predicted future levels of temperature and [CO2] as single factors and in combination (IPCC, AR5, RCP8.5). Across all genotypes, elevated [CO2] (700 ppm day/night) slightly decreased protein concentra......In the present study a set of 108 spring barley (H. vulgare L.) accessions were cultivated under predicted future levels of temperature and [CO2] as single factors and in combination (IPCC, AR5, RCP8.5). Across all genotypes, elevated [CO2] (700 ppm day/night) slightly decreased protein...

  18. Reproducibility of mass spectrometry based protein profiles for diagnosis of breast cancer across clinical studies

    DEFF Research Database (Denmark)

    Callesen, Anne Kjærgaard; Vach, Werner; Jørgensen, Per E

    2008-01-01

    Serum protein profiling by mass spectrometry has achieved attention as a promising technology in oncoproteomics. We performed a systematic review of published reports on protein profiling as a diagnostic tool for breast cancer. The MEDLINE, EMBASE, and COCHRANE databases were searched for original...... studies reporting discriminatory protein peaks for breast cancer as either protein identity or as m/ z values in the period from January 1995 to October 2006. To address the important aspect of reproducibility of mass spectrometry data across different clinical studies, we compared the published lists...... of potential discriminatory peaks with those peaks detected in an original MALDI MS protein profiling study performed by our own research group. A total of 20 protein/peptide profiling studies were eligible for inclusion in the systematic review. Only 3 reports included information on protein identity...

  19. Analysis of Subway Interior Noise at Peak Commuter Time.

    Science.gov (United States)

    Lee, Donguk; Kim, Gibbeum; Han, Woojae

    2017-07-01

    Although mass transit systems are convenient and efficient for urban people, little attention has been paid to the potential hearing hazard from their noise. The purpose of the current study was to measure and analyze levels of subway interior noise at peak commuter times and to provide information about commuters' daily dose of noise exposure. To measure the subway interior noise, nine subway lines inside Seoul (i.e., lines 1-9) and six lines surrounding the capital city area (i.e., Central, Bundang, Sinbundang, Incheon, Gyeongui, and Gyeongchun) were chosen. The noise was measured and recorded by a sound level meter for two-hour periods in the morning and evening. 1) In the LZeq analysis, the average noise level of all 15 lines was 72.78 dB; the maximum and minimum noise levels were 78.34 and 62.46 dB, respectively. The average noise level of the nine lines inside Seoul was 73.45 dB, which was 1.68-dB louder than that of the six lines surrounding the capital city area. 2) Based on the LZeq analysis of 33 measured frequencies, 12.5 Hz was the highest frequency and 20,000 Hz was the lowest. 3) There was no remarkable difference in the level of subway interior noise between morning and evening peak commuter times. We concluded that the level of subway interior noise was not loud enough for commuters to incur noise-induced hearing loss. Regardless, environmental noise control efforts in the subway system might be needed for commuters who take a subway every day.

  20. Interior Design Styles and Socio-demographic Characteristics in Egypt: From the concept of Zeitgeist

    Directory of Open Access Journals (Sweden)

    Rasha Mahmoud Ali El-Zeiny

    2016-01-01

    Full Text Available Interior design plays an important role in reflecting the social and cultural environments of countries and showing the characteristics of the age. The previous literature has suggested that people’s preferences for interior design styles are influenced by social distinctions, based on education level and age. In this study, we have argued more precisely socio – demographic factors (gender, age, income, major and city that affect the Egyptians’ preferences for interior design styles, and have discussed to what extent do the people preferences reflect Zeitgeist in Egypt. The findings supported the idea that socio-demographic factors can explain people’s design preferences.

  1. Electrical conductivity of the lunar interior - Theory, error sources, and estimates

    Science.gov (United States)

    Goldstein, B. E.

    1979-01-01

    Estimates of the electrical conductivity of the lunar interior were previously obtained by comparison of magnetometer data at the lunar surface and in near lunar space. In studies based on solar wind observations, IR was assumed that fields induced in the lunar interior by time-varying external fields are confined by the solar wind within the lunar interior on the dayside and within a cylindrical plasma cavity on the nightside. In the present paper, the induced fields are calculated for a more realistic conical plasma cavity geometry.

  2. A simplified model of dynamic interior cooling load evaluation for office buildings

    International Nuclear Information System (INIS)

    Ding, Yan; Zhang, Qiang; Wang, Zhaoxia; Liu, Min; He, Qing

    2016-01-01

    Highlights: • The core interior disturbance was determined by principle component analysis. • Influences of occupants on cooling load should be described using time series. • A simplified model was built to evaluate dynamic interior building cooling load. - Abstract: Predicted cooling load is a valuable tool for assessing the operation of air-conditioning systems. Compared with exterior cooling load, interior cooling load is more unpredictable. According to principle components analysis, occupancy was proved to be a typical factor influencing interior cooling loads in buildings. By exploring the regularity of interior disturbances in an office building, a simplified evaluation model for interior cooling load was established in this paper. The stochastic occupancy rate was represented by a Markov transition model. Equipment power, lighting power and fresh air were all related to occupancy rate based on time sequence. The superposition of different types of interior cooling loads was also considered in the evaluation model. The error between the evaluation results and measurement results was found to be lower than 10%. In reference to the cooling loads calculated by the traditional design method and area-based method in case study office rooms, the evaluated cooling loads were suitable for operation regulation.

  3. Molecular mechanics work station for protein conformational studies

    International Nuclear Information System (INIS)

    Fine, R.; Levinthal, C.; Schoenborn, B.; Dimmier, G.; Rankowitz, C.

    1984-01-01

    Interest in computational problems in Biology has intensified over the last few years, partly due to the development of techniques for the rapid cloning, sequencing, and mutagenesis of genes from organisims ranging from E. coli to Man. The central dogma of molecular biology; that DNA codes for mRNA which codes for protein, has been understood in a linear programming sense since the genetic code was cracked. But what is not understood at present is how a protein, once assembled as a long sequence of amino acids, folds back on itself to produce a three-dimensional structure which is unique to that protein and which dictates its chemical and biological activity. This folding process is purely physics, and involves the time evolution of a system of several thousand atoms which interact with each other and with atoms from the surrounding solvent. Molecular dynamics simulations on smaller molecules suggest that approaches which treat the protein as a classical ensemble of atoms interacting with each other via an empirical Hamiltonian can yield the kind of predictive results one would like when applied to proteins

  4. Whey protein concentration by ultrafiltration and study of functional properties

    Directory of Open Access Journals (Sweden)

    Sidiane Iltchenco

    2018-06-01

    Full Text Available ABSTRACT: This paper aim to evaluate the ultrafiltration (UF process for constituents recovery from whey. Sequences of factorial designs were performed by varying temperature (5 to 40°C and pressure (1 to 3 bar, to maximize the proteins concentration using membrane of 100kDa in dead end system. Based on the best result new experiments were performed with membrane of 50kDa and 10kDa. With the membrane of 50 the protein retention was about 3 times higher than the membrane of 100kDa. The concentrated obtained by UF membrane of 10kDa, 10°C and 2 bar in laboratory scale showed a mean protein retention of 80 %, greater protein solubility, emulsion stability and the identification of β-lactoglobulins (18.3 kDa and α-lactalbumin fractions (14.2kDa. Therefore, the use of membrane of 100 and 50kDa are became a industrially recommendable alternatives to concentration of whey proteins, and/or as a previous step to the fractionation of whey constituents using membrane ≤10kDa, aiming at future applications in different areas (food, pharmaceutical, chemical, etc..

  5. Whey Protein Supplementation Enhances Whole Body Protein Metabolism and Performance Recovery after Resistance Exercise: A Double-Blind Crossover Study

    Directory of Open Access Journals (Sweden)

    Daniel W. D. West

    2017-07-01

    Full Text Available No study has concurrently measured changes in free-living whole body protein metabolism and exercise performance during recovery from an acute bout of resistance exercise. We aimed to determine if whey protein ingestion enhances whole body net protein balance and recovery of exercise performance during overnight (10 h and 24 h recovery after whole body resistance exercise in trained men. In a double-blind crossover design, 12 trained men (76 ± 8 kg, 24 ± 4 years old, 14% ± 5% body fat; means ± standard deviation (SD performed resistance exercise in the evening prior to consuming either 25 g of whey protein (PRO; MuscleTech 100% Whey or an energy-matched placebo (CHO immediately post-exercise (0 h, and again the following morning (~10 h of recovery. A third randomized trial, completed by the same participants, involving no exercise and no supplement served as a rested control trial (Rest. Participants ingested [15N]glycine to determine whole body protein kinetics and net protein balance over 10 and 24 h of recovery. Performance was assessed pre-exercise and at 0, 10, and 24 h of recovery using a battery of tests. Net protein balance tended to improve in PRO (P = 0.064; effect size (ES = 0.61, PRO vs. CHO during overnight recovery. Over 24 h, net balance was enhanced in PRO (P = 0.036 but not in CHO (P = 0.84; ES = 0.69, PRO vs. CHO, which was mediated primarily by a reduction in protein breakdown (PRO < CHO; P < 0.01. Exercise decreased repetitions to failure (REP, maximal strength (MVC, peak and mean power, and countermovement jump performance (CMJ at 0 h (all P < 0.05 vs. Pre. At 10 h, there were small-to-moderate effects for enhanced recovery of the MVC (ES = 0.56, mean power (ES = 0.49, and CMJ variables (ES: 0.27–0.49 in PRO. At 24 h, protein supplementation improved MVC (ES = 0.76, REP (ES = 0.44, and peak power (ES = 0.55. In conclusion, whey protein supplementation enhances whole body anabolism, and may improve acute recovery of

  6. A Survey on the Color of Interior Design for University Students

    OpenAIRE

    Takata, Hiroshi

    2008-01-01

    The purpose of this study is to clarify the actual conditions of the color on interior design for university students. At first, the author carried out the questionnaire survey in order to grasp the characteristics of respondents and their consciousness of interior and color design. Based on the results of the questionnaire survey, the relationship between the characteristics of respondents and their consciousness was studied. Especially, the influence of the respondents' academic grade and t...

  7. Food for the Future: A Study of Insects as a Protein Source

    Science.gov (United States)

    Riggs, S.

    2017-12-01

    This study is designed to gain a sustainable, organic food source containing the proper amino acids, minerals, and protein to sustain the needs of human life on Earth as the current economy and environment will not be able to equip the needs for the future. The hypotheses are if available protein is increased in an insect's diet then their nutritional value will increase to fulfill a human's daily protein requirements in one serving size or less for each species tested and if there is a higher content of protein in the insects, then food created with it will receive higher ratings. Protein supplements were added to an insect's natural diet to increase nutritional value. Protein value in the insects increased to fulfill a human's daily dietary protein requirement in a third of a serving size. Biuret and absorption spectrometry testing demonstrates this correlation. Insects increased protein in their body showing a positive correlation to the hypothesis. Week one, protein values doubled and tripled in some species, unexpectedly. After three weeks, protein still continued increasing. There was high success in increasing the protein value in the different species of insects chosen. Is there a taste difference benefit with a higher content of protein in the insects? Over 55% of participants rated the brownies with more protein higher than the control groups, and overall 88% preferred brownies with insects opposed to without, supporting the second hypothesis.

  8. Interior seeding for the fabrication of single-grain REBCO bulk superconductors

    International Nuclear Information System (INIS)

    Kim, C-J; Park, S-D; Jun, B-H; Park, H-W

    2016-01-01

    This study presents a new seeding technique, named ‘interior seeding’ which allows the growth of a single REBCO (RE: rare-earth elements) grain in the interior of REBCO compacts. The key techniques of interior seeding are to provide appropriate open space for seeds in the interior of REBCO powder compacts to supply air or oxygen to the seeds, and to minimize the contact area between the seeds and liquid. The advantages of interior seeding are as follows: (1) simultaneous growth from the seed to the top and bottom of the REBCO compacts is possible, (2) fractions of the a-b growth sector and the a-c growth sector on the top surface can be controlled and (3) the top surfaces of the single-grain REBCO bulk superconductors are free from samarium or neodymium contamination from the used seeds. The very large single-grain Y 1.5 Ba 2 Cu 3 O 7−y (Y1.5) bulk superconductors (42 mm) were successfully fabricated using a melt growth (MG) process combined with interior seeding. Also, large-grain Y1.5 bulk superconductors (41 mm) with 〈110〉/〈110〉 and 〈100〉/〈100〉 grain junctions were fabricated using multiple interior seeding. In this paper, the detailed process of interior seeding, the development of top surface patterns and the properties of single-grain Y123 bulk superconductors fabricated using interior seeding were reported. (paper)

  9. Studying RNA-protein interactions in vivo by RNA immunoprecipitation

    DEFF Research Database (Denmark)

    Selth, Luke A; Close, Pierre; Svejstrup, Jesper Q

    2011-01-01

    and have significant effects on gene expression. RNA immunoprecipitation (RIP) is a powerful technique used to detect direct and indirect interactions between individual proteins and specific RNA molecules in vivo. Here, we describe RIP methods for both yeast and mammalian cells.......The crucial roles played by RNA-binding proteins in all aspects of RNA metabolism, particularly in the regulation of transcription, have become increasingly evident. Moreover, other factors that do not directly interact with RNA molecules can nevertheless function proximally to RNA polymerases...

  10. Foods with increased protein content: A qualitative study on European consumer preferences and perceptions.

    Science.gov (United States)

    Banovic, Marija; Arvola, Anne; Pennanen, Kyösti; Duta, Denisa E; Brückner-Gühmann, Monika; Lähteenmäki, Liisa; Grunert, Klaus G

    2018-06-01

    Foods with increased protein content have rapidly become one of the fastest-growing product categories targeting image- and health-focused consumers. However, it is not clear whether consumers really understand the difference between 'inherently rich in protein' and 'artificially increased protein'. This study used a qualitative focus group approach to investigate the consumer preferences and perceptions of foods with increased protein content among mixed-age and older population in four European countries. In total fifty-two participants were involved in the study. Understanding of the concept of foods with 'increased protein' content was limited. Both older and mixed-age participants could not differentiate between natural sources of protein and foods with increased protein content, no matter whether foods with animal or plant proteins were mentioned. Older participants expressed more scepticism towards foods with increased protein content than mixed-age participants. The combination of protein type and food carrier closer to conventional foods received more acceptance among both older and mixed-age participants. Future use and acceptance of foods with increased protein content will depend on the extent to which consumer concerns about incorporating additional protein into a diet can be responded. Copyright © 2018 Elsevier Ltd. All rights reserved.

  11. Recent advances in modeling stellar interiors (u)

    Energy Technology Data Exchange (ETDEWEB)

    Guzik, Joyce Ann [Los Alamos National Laboratory

    2010-01-01

    Advances in stellar interior modeling are being driven by new data from large-scale surveys and high-precision photometric and spectroscopic observations. Here we focus on single stars in normal evolutionary phases; we will not discuss the many advances in modeling star formation, interacting binaries, supernovae, or neutron stars. We review briefly: (1) updates to input physics of stellar models; (2) progress in two and three-dimensional evolution and hydrodynamic models; (3) insights from oscillation data used to infer stellar interior structure and validate model predictions (asteroseismology). We close by highlighting a few outstanding problems, e.g., the driving mechanisms for hybrid {gamma} Dor/{delta} Sct star pulsations, the cause of giant eruptions seen in luminous blue variables such as {eta} Car and P Cyg, and the solar abundance problem.

  12. Studies of protein structure in solution and protein folding using synchrotron small-angle x-ray scattering

    Energy Technology Data Exchange (ETDEWEB)

    Chen, Lingling [Stanford Univ., CA (United States)

    1996-04-01

    Synchrotron small angle x-ray scattering (SAXS) has been applied to the structural study of several biological systems, including the nitrogenase complex, the heat shock cognate protein (hsc70), and lysozyme folding. The structural information revealed from the SAXS experiments is complementary to information obtained by other physical and biochemical methods, and adds to our knowledge and understanding of these systems.

  13. Quantum state of the black hole interior

    International Nuclear Information System (INIS)

    Brustein, Ram; Medved, A.J.M.

    2015-01-01

    If a black hole (BH) is initially in an approximately pure state and it evaporates by a unitary process, then the emitted radiation will be in a highly quantum state. As the purifier of this radiation, the state of the BH interior must also be in some highly quantum state. So that, within the interior region, the mean-field approximation cannot be valid and the state of the BH cannot be described by some semiclassical metric. On this basis, we model the state of the BH interior as a collection of a large number of excitations that are packed into closely spaced but single-occupancy energy levels; a sort-of “Fermi sea” of all light-enough particles. This highly quantum state is surrounded by a semiclassical region that lies close to the horizon and has a non-vanishing energy density. It is shown that such a state looks like a BH from the outside and decays via gravitational pair production in the near-horizon region at a rate that agrees with the Hawking rate. We also consider the fate of a classical object that has passed through to the BH interior and show that, once it has crossed over the near-horizon threshold, the object meets its demise extremely fast. This result cannot be attributed to a “firewall”, as the trauma to the in-falling object only begins after it has passed through the near-horizon region and enters a region where semiclassical spacetime ends but the energy density is still parametrically smaller than Planckian.

  14. Realization of FRC interior and exterior furniture

    Science.gov (United States)

    Šonka, Š.; Frantová, M.; Štemberk, P.; Havrda, J.; Janouch, P.

    2017-09-01

    This article deals with the implementation of fibre reinforced concrete for interior and exterior furniture. The use of fibre reinforced concrete for non-traditional and small structures brings some specifics in design and realization. These are, in particular, the design of a suitable mixture, the choice of the shape of the structure in relation to the technological possibilities of realization, the static effects and finally the actual production of the element.

  15. Calidad ambiental interior: bienestar, confort y salud

    Directory of Open Access Journals (Sweden)

    Francisco Vargas Marcos

    2005-01-01

    Full Text Available Distintas formas de interpretar las condiciones ambientales han llevado al desarrollo de conceptos tales como edificio enfermo, calidad del aire o calidad ambiental interior, todos ellos encaminados a entender la complejidad de los contaminantes en los ambientes cerrados y las implicaciones sobre la salud de la población. La propuesta de "Calidad ambiental interior" es un avance conceptual y operativo que supera ampliamente a los anteriores, puesto que orienta las acciones hacia ambientes saludables sin limitar al aire la idea de contaminación. El objetivo del trabajo es identificar las competencias y el marco legislativo que permiten actuar en la prevención de riesgos asociados a la exposición de contaminantes en ambientes interiores. Óptimas condiciones en los ambientes interiores deben redundar en salud, bienestar y confort, tanto en lo que respecta a la vida laboral como a los ámbitos donde se desarrollan las actividades cotidianas extralaborales, escolares, de descanso y de ocio. La sociedad actual exige lugares seguros, limpios y bien climatizados, para lo que es necesario integrar percepciones y exigencias de los habitantes y alcanzar un óptimo equilibrio entre estándares sociales, uso de la energía y desarrollo sostenible, buscando confort sin contaminar y sin aumentar el consumo de fuentes energéticas que degraden el medio ambiente. El desarrollo legislativo se orienta a la seguridad y la salud en los lugares de trabajo y la regulación de las sustancias químicas. La Sanidad Ambiental lleva a cabo tareas de prevención y control, participa en la ejecución de convenios internacionales de reducción de contaminantes y desechos y promueve acciones para el desarrollo de la Estrategia Europea de Salud y Medio Ambiente.

  16. Memahami Estetika dari Sudut Pandang Desain Interior

    Directory of Open Access Journals (Sweden)

    Yunida Sofiana

    2015-07-01

    Full Text Available The term aesthetic has always become part of design. Without aesthetic, design has just a functional object. Aesthetic in design, particularly in interior design, has been influenced by many factors, which are aesthetic value, aesthetic perception, and time frame. Aesthetic has subjective meaning related to time frame and objective meaning related to implementation of element and principles of design on aesthetic term. Aesthetic perception is how we judge and see the object using our own thinking and value. Time frame is where and when the aesthetic value happens. Interior design trend right now has been influenced by technology in many ways so the concept of modern design theme is always the best choice for designer. However, using modern theme as a design concept has to be implemented as a whole theme and related to aesthetical value so that the design will gain much appreciation from others. This paper used deductive method to explain the theory of aesthetic and the implementation of aesthetic value in interior design context. Design should speak louder than it looked. 

  17. PCX, Interior-Point Linear Programming Solver

    International Nuclear Information System (INIS)

    Czyzyk, J.

    2004-01-01

    1 - Description of program or function: PCX solves linear programming problems using the Mehrota predictor-corrector interior-point algorithm. PCX can be called as a subroutine or used in stand-alone mode, with data supplied from an MPS file. The software incorporates modules that can be used separately from the linear programming solver, including a pre-solve routine and data structure definitions. 2 - Methods: The Mehrota predictor-corrector method is a primal-dual interior-point method for linear programming. The starting point is determined from a modified least squares heuristic. Linear systems of equations are solved at each interior-point iteration via a sparse Cholesky algorithm native to the code. A pre-solver is incorporated in the code to eliminate inefficiencies in the user's formulation of the problem. 3 - Restriction on the complexity of the problem: There are no size limitations built into the program. The size of problem solved is limited by RAM and swap space on the user's computer

  18. Asymmetric interiors for small black holes

    Energy Technology Data Exchange (ETDEWEB)

    Kabat, Daniel [Department of Physics and Astronomy, Lehman College,City University of New York, Bronx NY 10468 (United States); Lifschytz, Gilad [Department of Mathematics, Faculty of Natural Science,University of Haifa, Haifa 31905 (Israel)

    2016-08-16

    We develop the representation of infalling observers and bulk fields in the CFT as a way to understand the black hole interior in AdS. We first discuss properties of CFT states which are dual to black holes. We then show that in the presence of a Killing horizon bulk fields can be decomposed into pieces we call ingoing and outgoing. The ingoing field admits a simple operator representation in the CFT, even inside a small black hole at late times, which leads to a simple CFT description of infalling geodesics. This means classical infalling observers will experience the classical geometry in the interior. The outgoing piece of the field is more subtle. In an eternal two-sided geometry it can be represented as an operator on the left CFT. In a stable one-sided geometry it can be described using entanglement via the PR construction. But in an evaporating black hole trans-horizon entanglement breaks down at the Page time, which means that for old black holes the PR construction fails and the outgoing field does not see local geometry. This picture of the interior allows the CFT to reconcile unitary Hawking evaporation with the classical experience of infalling observers.

  19. Segmental isotope labeling of proteins for NMR structural study using a protein S tag for higher expression and solubility

    International Nuclear Information System (INIS)

    Kobayashi, Hiroshi; Swapna, G. V. T.; Wu, Kuen-Phon; Afinogenova, Yuliya; Conover, Kenith; Mao, Binchen; Montelione, Gaetano T.; Inouye, Masayori

    2012-01-01

    A common obstacle to NMR studies of proteins is sample preparation. In many cases, proteins targeted for NMR studies are poorly expressed and/or expressed in insoluble forms. Here, we describe a novel approach to overcome these problems. In the protein S tag-intein (PSTI) technology, two tandem 92-residue N-terminal domains of protein S (PrS 2 ) from Myxococcus xanthus is fused at the N-terminal end of a protein to enhance its expression and solubility. Using intein technology, the isotope-labeled PrS 2 -tag is replaced with non-isotope labeled PrS 2 -tag, silencing the NMR signals from PrS 2 -tag in isotope-filtered 1 H-detected NMR experiments. This method was applied to the E. coli ribosome binding factor A (RbfA), which aggregates and precipitates in the absence of a solubilization tag unless the C-terminal 25-residue segment is deleted (RbfAΔ25). Using the PrS 2 -tag, full-length well-behaved RbfA samples could be successfully prepared for NMR studies. PrS 2 (non-labeled)-tagged RbfA (isotope-labeled) was produced with the use of the intein approach. The well-resolved TROSY-HSQC spectrum of full-length PrS 2 -tagged RbfA superimposes with the TROSY-HSQC spectrum of RbfAΔ25, indicating that PrS 2 -tag does not affect the structure of the protein to which it is fused. Using a smaller PrS-tag, consisting of a single N-terminal domain of protein S, triple resonance experiments were performed, and most of the backbone 1 H, 15 N and 13 C resonance assignments for full-length E. coli RbfA were determined. Analysis of these chemical shift data with the Chemical Shift Index and heteronuclear 1 H– 15 N NOE measurements reveal the dynamic nature of the C-terminal segment of the full-length RbfA protein, which could not be inferred using the truncated RbfAΔ25 construct. CS-Rosetta calculations also demonstrate that the core structure of full-length RbfA is similar to that of the RbfAΔ25 construct.

  20. Study of the strength characteristics of protein-based lightweight ...

    African Journals Online (AJOL)

    Compressive strength test was carried out on the protein-based lightweight foamed concrete produced with cement partially replaced by rice husk ash to ascertain its strength characteristics. Standard concrete cubes of 150 x 150 x 150 mm were produced using ordinary Portland cement (OPC), fine aggregate, aqueous ...

  1. Single-Molecule Studies of Bacterial Protein Translocation

    NARCIS (Netherlands)

    Kedrov, Alexej; Kusters, Ilja; Driessen, Arnold J. M.

    2013-01-01

    In prokaryotes, a large share of the proteins are secreted from the cell through a process that requires their translocation across the cytoplasmic membrane. This process is mediated by the universally conserved Sec system with homologues in the endoplasmic reticulum and thylakoid membranes of

  2. Exploring Socio-Technical Features of Green Interior Design of Residential Buildings: Indicators, Interdependence and Embeddedness

    Directory of Open Access Journals (Sweden)

    Yan Ning

    2016-12-01

    Full Text Available This research aims to develop indicators for assessing green interior design of new residential buildings in China, grounded in the socio-technical systems approach. The research was carried out through a critical literature review and two focus group studies. The results show that the boundaries of green interior design were identified with respect to three dimensions, namely performance, methodology and stakeholders. The socio-technical systems approach argues for the recognition of the interdependence between the systems elements and the feature of embeddedness. The interdependence of the systems elements exists within each of these three dimensions and across them. It is also found that the socio-technical systems of green interior design are embedded in the social, regulatory and geographic context. Taking interior design of residential buildings as the empirical setting, this study contributes to the literature of green building assessment by presenting a socio-technical systems approach.

  3. Learning through Nomadic Interiors - Villa Rotonda through the lenses of Heterotopia

    DEFF Research Database (Denmark)

    Hvejsel, Marie Frier; Fisker, Anna Marie

    2015-01-01

    in a series of nomadic interiors allowing the students to travel in time and place; from Palladio to the 14th Architectural Biennale and from Vincenza to Venice. In the paper we use Foucaults concept of Heterotopia to analyze how a window in 1:10 from the south façade of Villa Rotonda now re-designed......The question of the critical role of our built heritage to the complex and interdisciplinary processes that govern the current development of the built environment define a continuous challenge in interior studies and education: Can a study of the fundamental interior elements of Villa Rotonda...... of human geography as elaborated by Foucault and apply it on a project developed and exhibited on the 14th International Architecture Biennale in Venice that focused on the current need to develop Urban Farming strategies. Here an interdisciplinary team of students analyzed fundamental interior elements...

  4. The Homogeneous Interior-Point Algorithm: Nonsymmetric Cones, Warmstarting, and Applications

    DEFF Research Database (Denmark)

    Skajaa, Anders

    algorithms for these problems is still limited. The goal of this thesis is to investigate and shed light on two computational aspects of homogeneous interior-point algorithms for convex conic optimization: The first part studies the possibility of devising a homogeneous interior-point method aimed at solving...... problems involving constraints that require nonsymmetric cones in their formulation. The second part studies the possibility of warmstarting the homogeneous interior-point algorithm for conic problems. The main outcome of the first part is the introduction of a completely new homogeneous interior......-point algorithm designed to solve nonsymmetric convex conic optimization problems. The algorithm is presented in detail and then analyzed. We prove its convergence and complexity. From a theoretical viewpoint, it is fully competitive with other algorithms and from a practical viewpoint, we show that it holds lots...

  5. Unfolding study of a trimeric membrane protein AcrB.

    Science.gov (United States)

    Ye, Cui; Wang, Zhaoshuai; Lu, Wei; Wei, Yinan

    2014-07-01

    The folding of a multi-domain trimeric α-helical membrane protein, Escherichia coli inner membrane protein AcrB, was investigated. AcrB contains both a transmembrane domain and a large periplasmic domain. Protein unfolding in sodium dodecyl sulfate (SDS) and urea was monitored using the intrinsic fluorescence and circular dichroism spectroscopy. The SDS denaturation curve displayed a sigmoidal profile, which could be fitted with a two-state unfolding model. To investigate the unfolding of separate domains, a triple mutant was created, in which all three Trp residues in the transmembrane domain were replaced with Phe. The SDS unfolding profile of the mutant was comparable to that of the wild type AcrB, suggesting that the observed signal change was largely originated from the unfolding of the soluble domain. Strengthening of trimer association through the introduction of an inter-subunit disulfide bond had little effect on the unfolding profile, suggesting that trimer dissociation was not the rate-limiting step in unfolding monitored by fluorescence emission. Under our experimental condition, AcrB unfolding was not reversible. Furthermore, we experimented with the refolding of a monomeric mutant, AcrBΔloop , from the SDS unfolded state. The CD spectrum of the refolded AcrBΔloop superimposed well onto the spectra of the original folded protein, while the fluorescence spectrum was not fully recovered. In summary, our results suggested that the unfolding of the trimeric AcrB started with a local structural rearrangement. While the refolding of secondary structure in individual monomers could be achieved, the re-association of the trimer might be the limiting factor to obtain folded wild-type AcrB. © 2014 The Protein Society.

  6. Deep Interior: The first comprehensive geophysical investigation of an asteroid

    Science.gov (United States)

    Asphaug, E.; Belton, M.; Klaasen, K.; McFadden, L.; Ostro, S.; Safaeinili, A.; Scheeres, D.; Sunshine, J.; Yeomans, D.

    Near-Earth Objects (NEOs) come closer to Earth than any other celestial body, and their compositions are represented on Earth by thousands of well-studied meteorites. Yet we understand neither their origin, evolution, nor their geophysical behavior. These secrets are locked up in their unexplored interiors. Goal 1 of the NASA Strategic Plan emphasizes the requirement to catalogue and understand NEOs down to 1 km diameter. Goal 4 urges us to understand natural processes at work in the low gravity environment. Goal 5 expresses the need to explore the solar system and to learn how planets originated and evolved. In response to the NASA Strategic Plan we are proposing a NASA Discovery mission whose primary science objective is to greatly advance the realization of these Goals by conducting the first investigation of the global geophysics of an asteroid. Radio reflection data from 5 km orbit about a 1 km NEO will provide a tomographic 3D image of electromagnetic properties. Mechanical properties will be examined in the simplest possible way, using explosions to initiate seismic cratering events and to expose diverse interior units for spectroscopic analysis. Deep Interior is the lowest-risk, lowest cost path towards attaining the required characterization of NEOs. It breaks new ground for future missions to asteroids and comets and facilitates the design of reliable NEO technologies. Our science goals are as follows, and the techniques (radio science, imaging, IR spectroscopy, active surface science) will be described at this meeting: Asteroid Interiors. Radio, gravity, and seismology experiments give a complete first picture of an asteroid's deep interior, resolving inclusions, voids and unit boundaries at ˜ 30 m scales, and determining global and regional mechanical properties. Surface Geophysics. Blast experiments explore the structure and mechanics of the upper meters, demonstrate microgravity cratering, trigger natural geomorphic events, and expose subsurface

  7. Comparative studies of human and chicken retinol-binding proteins and prealbumins.

    Science.gov (United States)

    Kopelman, M; Mokady, S; Cogan, U

    1976-08-09

    Microheterogeneity of retinol-binding proteins of human plasma and urine, and of chicken plasma was studied by polyacrylamide gel electrophoresis. All three protein systems were found microheterogenous. Incorporation of retinol into the protein preparations on the one hand, and depletion of these proteins from retinol on the other hand, enabled us to clarify the extent to which the presence or absence of the ligand affects the apparent heterogeneity. Upon electrophoresis, each of the native proteins displayed two pairs of protein zones. It appeared that within each pair the fast moving band corresponded to aporetinol-binding protein which upon binding of retinol was converted to a holoprotein with a slightly lower mobility. However, it did not seem that proteins of one pair were converted to proteins of the second pair upon binding of retinol, substantiating ghe microheterogenous character of this protein system. A rapid, two step procedure for isolation of prealbumins from plasma is described. The method which consists of DEAE-cellulose chromatography follwed by preparative electrophoresis was utilized to separate human and chicken prealbumins. Routine dodecyl sulphate electrophoresis resulted in partial dissociation of human prealbumin but in no dissociation of the chicken protein. More drastic treatments prior to electrophoresis were needed to effect complete disruption of both proteins into subunits.

  8. Stakeholder involvement in stages of a participatory process illustrated in interior design cases

    DEFF Research Database (Denmark)

    Vink, Peter; van Rhijn, Gu; Seim, Rikke

    2008-01-01

    In a previous study (Vink et al., 2008) an overview was made of the involvement of different stakeholders in a participatory design process. In this paper this overview was used to describe four participatory design cases focused on improvising productivity, health, and comfort by interior design....... It appeared that this overview is useful to describe the involvement in participatory interior design projects. However, it can only serve as an initial benchmark as much is dependent on the specific case at hand....

  9. 49 CFR 179.12 - Interior heater systems.

    Science.gov (United States)

    2010-10-01

    ... Design Requirements § 179.12 Interior heater systems. (a) Interior heater systems shall be of approved design and materials. If a tank is divided into compartments, a separate system shall be provided for... 49 Transportation 2 2010-10-01 2010-10-01 false Interior heater systems. 179.12 Section 179.12...

  10. Temporal trends of forest interior conditions in the United States

    Science.gov (United States)

    Kurt Riitters; James. Wickham

    2012-01-01

    Nature's benefits derived from forest interior environments cannot be sustained if the natural capital of forest interior area is not sustained. We analyzed the spatial patterns of forest loss and gain for the conterminous United States from 2001 to 2006 to determine whether forest interior environments were maintained at five spatial scales. A 1.1 percent net...

  11. Interior design students win two IDEC Student Design Competition awards

    OpenAIRE

    Watson-Bloch, Cathy

    2005-01-01

    Interior Design students in the School of Architecture + Design at Virginia Tech won two of the four awards presented in the 2004-2005 Interior Design Educators Council (IDEC) Student Design Competition. Winners were selected at the International IDEC Conference in Savannah, Ga. with Virginia Tech Interior Design students winning second place and honorable mention.

  12. The study of membrane-protein /detergent interactions by neutron crystallography

    Energy Technology Data Exchange (ETDEWEB)

    Timmins, P A; Penel, S [Institut Max von Laue - Paul Langevin (ILL), 38 - Grenoble (France); Pebay-Peyroula, E [IBS- UJF Grenoble (France)

    1997-04-01

    Proteins which are found embedded in membranes can usually only be purified and studied from the point of view of structure by dissolving them in detergents. The structure of the resulting mixed protein-detergent complexes are poorly understood. An important method for studying them is through neutron diffraction of the crystalline complexes. This allows us to understand better how the proteins behave in the natural membrane as well as allowing us to visualize and hopefully improve the crystallisation process. Studies on the pore-forming protein porin using data collected on the diffractometer DB21 are described. (author). 4 refs.

  13. Study of BSA protein adsorption/release on hydroxyapatite nanoparticles

    Science.gov (United States)

    Swain, Sanjaya Kumar; Sarkar, Debasish

    2013-12-01

    Three different spherical, rod and fibrous morphologies of hydroxyapatite (HA) nanoparticles have been prepared through control over the processing parameters like temperature, pH and Ca:P ratio. Protein adsorption/release with respect to HA nanoparticle morphologies are investigated using model protein bovine serum albumin (BSA). BSA adsorption on HA nanoparticles follows Langmuir adsorption isotherm. Thermal analysis and FT-IR spectrum confirms the BSA adhesion and retention of their secondary structure. High surface area with high Ca:P ratio nanorod adsorbs relatively more amount (28 mg BSA/gm of nanorod HA) of BSA within 48 h in comparison with counterpart fibroid and spherical morphologies. Slow and steady BSA release (75 wt% of adsorbed BSA in 96 h) from nanorod HA is found as futuristic drug delivery media.

  14. Study the Characterization of Spectral Absorbance on Irradiated Milk Protein

    Science.gov (United States)

    Fohely, F.; Suardi, N.

    2018-04-01

    The milk has been adopted as a structural nature food for a long era since it is containing most of the growth factors, protective agents, and enzymes needed for the body. a few attempts have been conducted to treat the dairy products especially raw milk by the means of ionizing radiation. as its production has been an expanding industry for many years due to the high demands from the consumers worldwide, there is still some doubt about preserving these products by irradiation. In this work, a preliminary effort to describe the influences of ionizing radiation on raw milk’s protein will be devoted to measuring the spectral absorbance of the total protein (after subjected to varied radiation doses) by UV-VIS-NIR spectroscopy analysis. The absorbance spectrum then analyzed based on absorbance spectra of organic compounds. A comparison is made between the effects of different radiation doses to estimate the influence in milk’s structure.

  15. Studies of Single Biomolecules, DNA Conformational Dynamics, and Protein Binding

    Science.gov (United States)

    2008-07-11

    Nucleotide Base pairs Hydrogen bonds FIG. 1: Ladder structure of DNA showing the Watson - Crick bonding of the bases A, T, G, and C which are suspended by a...protected against unwanted action of chemicals and proteins. The three-dimensional structure of DNA is the famed Watson - Crick double-helix, the equilibrium...quantitative analysis [88]. [1] A. Kornberg and T. A. Baker, DNA Replication (W. H. Freeman, New York, 1992). [2] J. D. Watson and F. H. C. Crick

  16. Nuclear Magnetic Resonance spectroscopy studies of proteins-glycoconjugates interactions

    OpenAIRE

    Marchetti, Roberta

    2013-01-01

    This PhD thesis work has been focused on the analysis of the structural requisites for recognition and binding between proteins and glycoconjugates, essential for the comprehension of mechanisms of paramount importance in chemistry, biology and biomedicine. A large variety of techniques, such as crystallographic analysis, titration microcalorimetry (ITC), surface plasmon resonance (SPR) and fluorescence spectroscopy, allows the elucidation of molecular recognition events. In the last years...

  17. Apply 3D model on the customized product color combination for the interior decoration

    Science.gov (United States)

    Chen, Cheih-Ying

    2013-03-01

    The customized product color interface for the interior decoration is designed to simulate the display of various color combination sofas in the interior of the room. There are 144 color combinations of the spatial image resulted from four the interior rooms and 36 popular color sofas. The image compositing technique is adopted to appear the 144 color combinations of the spatial image on computer screen. This study tests the experience of using the interface by the questionnaire for User Interface Satisfaction (QUIS). The results show that the high grade of evaluation items including wonderful, easy, satisfying, stimulating and flexible for the experience of users. Therefore, the entrepreneur who wants to display the color primarily commodity could using the customized color combination interface with 3D models for consumers to take opportunity to find the appropriate products to meet with the interior room, so as to shorten communication time between entrepreneurs and consumers.

  18. Study on antibacterial activity of hydrogel from irradiated silk protein

    International Nuclear Information System (INIS)

    Bunnak, J.; Chaisupakitsin, M.

    2001-01-01

    Hydrogels for biomedical application were prepared from solution blends of 3% silk protein and 3%, 10% poly (vinyl alcohol) (PVA) and followed with irradiation. Mixture of hydrogels were gamma irradiated at 10, 20, 30, 40 and 50 kGy under N 2 atmosphere. To clarify anti-bacterial activity of hydrogels, modified of the Agar disk diffusion method and American Association of Textile Chemists and Colorists, AATCC Test Method 90-1977, were carried out. The four kinds of bacteria such as Escherichia coli, Bacillus subtilis, Staphylococcus aureus and Staphylococcus epidermidis, were used. It was found that a 1:3 volume ratio of 3% silk protein and 3% PVA respectively, at 50 kGy irradiation, is suitable conditions for preparation hydrogels and trend to indicate the highest of an antibacterial activity against E. coli, B. subtilis and S. aureus. However the antibacterial activity of hydrogels against S. epidermidis was not clearly. These results are very useful to expand the application of hydrogel from irradiated silk protein to the medical products. (author)

  19. Origins of Allostery and Evolvability in Proteins: A Case Study.

    Science.gov (United States)

    Raman, Arjun S; White, K Ian; Ranganathan, Rama

    2016-07-14

    Proteins display the capacity for adaptation to new functions, a property critical for evolvability. But what structural principles underlie the capacity for adaptation? Here, we show that adaptation to a physiologically distinct class of ligand specificity in a PSD95, DLG1, ZO-1 (PDZ) domain preferentially occurs through class-bridging intermediate mutations located distant from the ligand-binding site. These mutations provide a functional link between ligand classes and demonstrate the principle of "conditional neutrality" in mediating evolutionary adaptation. Structures show that class-bridging mutations work allosterically to open up conformational plasticity at the active site, permitting novel functions while retaining existing function. More generally, the class-bridging phenotype arises from mutations in an evolutionarily conserved network of coevolving amino acids in the PDZ family (the sector) that connects the active site to distant surface sites. These findings introduce the concept that allostery in proteins could have its origins not in protein function but in the capacity to adapt. Copyright © 2016 Elsevier Inc. All rights reserved.

  20. Study on antibacterial activity of hydrogel from irradiated silk protein

    Energy Technology Data Exchange (ETDEWEB)

    Bunnak, J; Chaisupakitsin, M [King Mongkut' s Institute of Technology Lardkrabang, Bangkok (Thailand)

    2001-03-01

    Hydrogels for biomedical application were prepared from solution blends of 3% silk protein and 3%, 10% poly (vinyl alcohol) (PVA) and followed with irradiation. Mixture of hydrogels were gamma irradiated at 10, 20, 30, 40 and 50 kGy under N{sub 2} atmosphere. To clarify anti-bacterial activity of hydrogels, modified of the Agar disk diffusion method and American Association of Textile Chemists and Colorists, AATCC Test Method 90-1977, were carried out. The four kinds of bacteria such as Escherichia coli, Bacillus subtilis, Staphylococcus aureus and Staphylococcus epidermidis, were used. It was found that a 1:3 volume ratio of 3% silk protein and 3% PVA respectively, at 50 kGy irradiation, is suitable conditions for preparation hydrogels and trend to indicate the highest of an antibacterial activity against E. coli, B. subtilis and S. aureus. However the antibacterial activity of hydrogels against S. epidermidis was not clearly. These results are very useful to expand the application of hydrogel from irradiated silk protein to the medical products. (author)

  1. Radiotracer studies on protein metabolism in different focuses of growth in vivo

    International Nuclear Information System (INIS)

    Rapoport, E.A.; Konikova, A.S.

    1979-01-01

    The role of various components of protein turnover in the liver growth induced by partial hepatectomy or phenobarbital as well as in malignant tumours has been studied with a radiotracer method. The ratio of the utilized precursors of exo- and endogenous origin during the formation of protein in focuses of growth, is labile, depends on a number of factors and varies even in the subcellular structures of the cell nucleus. It is probable that due to their reutilization through transreactions the protein structural units have in some focuses of growth and during formation of some proteins a definite superiority over the free aminoacids. It is also shown that the release of proteins and their degradation products from Walker 256 carcinosarcoma and the reutilization of proteins and their degradation products by sarcoma M-1 contribute to the protein turnover in the tumours. 8author)

  2. Fluorescence spectroscopy studies of HEK293 cells expressing DOR-Gi1alfa fusion protein; the effect of cholesterol depletion

    Czech Academy of Sciences Publication Activity Database

    Brejchová, Jana; Sýkora, Jan; Dlouhá, Kateřina; Roubalová, Lenka; Ostašov, Pavel; Vošahlíková, Miroslava; Hof, Martin; Svoboda, Petr

    2011-01-01

    Roč. 1808, č. 12 (2011), s. 2819-2829 ISSN 0005-2736 R&D Projects: GA MŠk(CZ) LC06063; GA MŠk(CZ) LC554; GA ČR(CZ) GD305/08/H037 Grant - others:GA ČR(CZ) GAP208/10/1090 Institutional research plan: CEZ:AV0Z50110509; CEZ:AV0Z40400503 Keywords : plasma membrane * cholesterol depletion * fluorescence spectroscopy * hydrophobic membrane interior * delta-opioid receptor ( DOR ), * G protein Subject RIV: BO - Biophysics Impact factor: 3.990, year: 2011

  3. Mesitylene-Cored Glucoside Amphiphiles (MGAs) for Membrane Protein Studies: Importance of Alkyl Chain Density in Detergent Efficacy

    DEFF Research Database (Denmark)

    Cho, Kyung Ho; Ribeiro, Orquidea; Du, Yang

    2016-01-01

    Detergents serve as useful tools for membrane protein structural and functional studies. Their amphipathic nature allows detergents to associate with the hydrophobic regions of membrane proteins whilst maintaining the proteins in aqueous solution. However, widely used conventional detergents...

  4. Solvent Effects on Protein Folding/Unfolding

    Science.gov (United States)

    García, A. E.; Hillson, N.; Onuchic, J. N.

    Pressure effects on the hydrophobic potential of mean force led Hummer et al. to postulate a model for pressure denaturation of proteins in which denaturation occurs by means of water penetration into the protein interior, rather than by exposing the protein hydrophobic core to the solvent --- commonly used to describe temperature denaturation. We study the effects of pressure in protein folding/unfolding kinetics in an off-lattice minimalist model of a protein in which pressure effects have been incorporated by means of the pair-wise potential of mean force of hydrophobic groups in water. We show that pressure slows down the kinetics of folding by decreasing the reconfigurational diffusion coefficient and moves the location of the folding transition state.

  5. Cloning and characterization of chitinases from interior spruce and lodgepole pine.

    Science.gov (United States)

    Kolosova, N; Breuil, C; Bohlmann, J

    2014-05-01

    Chitinases have been implicated in the defence of conifers against insects and pathogens. cDNA for six chitinases were cloned from interior spruce (Picea glauca x engelmannii) and four from lodgepole pine (Pinus contorta). The cloned interior spruce chitinases were annotated class I PgeChia1-1 and PgeChia1-2, class II PgeChia2-1, class IV PgeChia4-1, and class VII PgeChia7-1 and PgeChia7-2; lodgepole pine chitinases were annotated class I PcChia1-1, class IV PcChia4-1, and class VII PcChia7-1 and PcChia7-2. Chitinases were expressed in Escherichia coli with maltose-binding-protein tags and soluble proteins purified. Functional characterization demonstrated chitinolytic activity for the three class I chitinases PgeChia1-1, PgeChia1-2 and PcChia1-1. Transcript analysis established strong induction of most of the tested chitinases, including all three class I chitinases, in interior spruce and lodgepole pine in response to inoculation with bark beetle associated fungi (Leptographium abietinum and Grosmannia clavigera) and in interior spruce in response to weevil (Pissodes strobi) feeding. Evidence of chitinolytic activity and inducibility by fungal and insect attack support the involvement of these chitinases in conifer defense. Copyright © 2014 Elsevier Ltd. All rights reserved.

  6. Reflective coatings for interior and exterior of buildings and improving thermal performance

    International Nuclear Information System (INIS)

    Joudi, Ali; Svedung, Harald; Cehlin, Mathias; Rönnelid, Mats

    2013-01-01

    Highlights: ► Increase building energy efficiency by optimizing surface optical properties. ► Study different scenarios with both interior and exterior reflective coatings. ► Combined thermal effect of both interior and exterior reflective coatings. -- Abstract: The importance of reducing building energy usage and thriving for more energy efficient architectures, has nurtured creative solutions and smart choices of materials in the last few decades. Among those are optimizing surface optical properties for both interior and exterior claddings of the building. Development in the coil-coating steel industries has now made it possible to allocate correct optical properties for steel clad buildings with improved thermal performance. Although the importance of the exterior coating and solar gain are thoroughly studied in many literatures, the effect of interior cladding are less tackled, especially when considering a combination of both interior and exterior reflective coatings. This paper contemplates the thermal behavior of small cabins with reflective coatings on both interior and exterior cladding, under different conditions and climates with the aim to clarify and point out to the potential energy saving by smart choices of clad coatings.

  7. Evolution of Asian Interior Arid-Zone Biota: Evidence from the Diversification of Asian Zygophyllum (Zygophyllaceae)

    Science.gov (United States)

    Li, Hong-Lei; Yu, Sheng-Xiang; Zhang, Lin-Jing; Wang, Wei

    2015-01-01

    The Asian interior arid zone is the largest desert landform system in the Northern Hemisphere, and has high biodiversity. Little is currently known about the evolutionary history of its biota. In this study, we used Zygophyllum, an important and characteristic component of the Asian interior arid zone, to provide new insights into the evolution of this biota. By greatly enlarged taxon sampling, we present the phylogenetic analysis of Asian Zygophyllum based on two plastid and one nuclear markers. Our phylogenetic analyses indicate that Asian Zygophyllum and Sarcozygium form a clade and Sarcozygium is further embedded within the shrub subclade. An integration of phylogenetic, biogeographic, and molecular dating methods indicates that Zygophyllum successfully colonized the Asian interior from Africa in the early Oligocene, and Asian Zygophyllum became differentiated in the early Miocene and underwent a burst of diversification in the late Miocene associated with the expansion of Asian interior arid lands due to orogenetic and climatic changes. Combining diversification patterns of other important components of the Asian interior arid zone, we propose a multi-stage evolution model for this biota: the late Eocene–early Oligocene origin, the early Miocene expansion, and the middle-late Miocene rapid expansion to the whole Asian interior arid zone. This study also demonstrates that, for Zygophyllum and perhaps other arid-adapted organisms, arid biomes are evolutionary cradles of diversity. PMID:26393796

  8. Space station interior design: Results of the NASA/AIA space station interior national design competition

    Science.gov (United States)

    Haines, R. F.

    1975-01-01

    The results of the NASA/AIA space station interior national design competition held during 1971 are presented in order to make available to those who work in the architectural, engineering, and interior design fields the results of this design activity in which the interiors of several space shuttle size modules were designed for optimal habitability. Each design entry also includes a final configuration of all modules into a complete space station. A brief history of the competition is presented with the competition guidelines and constraints. The first place award entry is presented in detail, and specific features from other selected designs are discussed. This is followed by a discussion of how some of these design features might be applied to terrestrial as well as space situations.

  9. Studies on the interaction of riboflavin 5'-phosphate with proteins with special attention to bacterial bioluminescence

    NARCIS (Netherlands)

    Gast, R.

    1978-01-01

    The central theme of this thesis is the interaction of FMN with proteins. For one of the proteins studied, the enzyme luciferase from bacteria, further investigations were done on the process of light emission.
    In chapter 2 and 3 studies are reported on the binding of FMN with relatively

  10. A Critical Appraisal of Quantitative Studies of Protein Degradation in the Framework of Cellular Proteostasis

    Directory of Open Access Journals (Sweden)

    Beatriz Alvarez-Castelao

    2012-01-01

    Full Text Available Protein homeostasis, proteostasis, is essential to understand cell function. Protein degradation is a crucial component of the proteostatic mechanisms of the cell. Experiments on protein degradation are nowadays present in many investigations in the field of molecular and cell biology. In the present paper, we focus on the different experimental approaches to study protein degradation and present a critical appraisal of the results derived from steady-state and kinetic experiments using detection of unlabelled and labelled protein methodologies with a proteostatic perspective. This perspective allows pinpointing the limitations in interpretation of results and the need of further experiments and/or controls to establish “definitive evidence” for the role of protein degradation in the proteostasis of a given protein or the entire proteome. We also provide a spreadsheet for simple calculations of mRNA and protein decays for mimicking different experimental conditions and a checklist for the analysis of experiments dealing with protein degradation studies that may be useful for researchers interested in the area of protein turnover.

  11. Assessment as a Barrier in Developing Design Expertise: Interior Design Student Perceptions of Meanings and Sources of Grades

    Science.gov (United States)

    Smith, Kennon M.

    2013-01-01

    This article reports on a portion of a larger qualitative study focused on a group of interior design students' perceptions of their educational experiences. Twelve interior design students enrolled in their final studio course participated in interviews intended to elicit their perceptions of key barriers encountered during their undergraduate…

  12. X-ray spectromicroscopy studies of protein-polymer Interactions

    International Nuclear Information System (INIS)

    Hitchcock, A.P.; Tyliszczak, T.; Heng, Y.M.; Cornelius, R.; Brash, J.L.; Ade, H.; Anders, S.; Scholl, A.; Nolting, F.

    2000-01-01

    Identification of the sites of protein binding on laterally heterogeneous polymer surfaces can help understand mechanisms of bio-passivation, which in turn has practical impact on developing improved polymers for medical uses, such as blood contact applications. We have used scanning X-ray transmission microscopy and photoelectron emission microscopy to explore the sensitivity of these X-ray microscopies to detection of human serum albumin adsorbed onto the surface of two different polyurethane polymers. Both techniques appear capable of the requisite monolayer sensitivity

  13. Interior Design 1992 Buyers Guide issue.

    Science.gov (United States)

    1992-01-30

    The Interior Design Magazine Buyers Guide is compiled with you, the designer, in mind. So it's packed with the most comprehensive collection of sources available anyplace--arranged for fast, easy access. First, the Keyword Index presents all the Buyers Guide product categories alphabetically (see the first tab divider). Refer to the page number indicated in the Product Index (second tab divider) to view various manufacturers of products under each category heading. Addresses, phone and fax numbers, regional and international showroom/representatives are located in the A-Z Index (third tab divider) in alphabetical order. Consult the table of contents for trade associations, lighting consultants, marts, and other useful sections.

  14. Interior point decoding for linear vector channels

    International Nuclear Information System (INIS)

    Wadayama, T

    2008-01-01

    In this paper, a novel decoding algorithm for low-density parity-check (LDPC) codes based on convex optimization is presented. The decoding algorithm, called interior point decoding, is designed for linear vector channels. The linear vector channels include many practically important channels such as inter-symbol interference channels and partial response channels. It is shown that the maximum likelihood decoding (MLD) rule for a linear vector channel can be relaxed to a convex optimization problem, which is called a relaxed MLD problem

  15. The Interiors of Jupiter and Saturn

    Science.gov (United States)

    Helled, Ravit

    2018-05-01

    Probing the interiors of the giant planets in our Solar System is not an easy task. This requires a set of observations combined with theoretical models that are used to infer the planetary composition and its depth dependence. The masses of Jupiter and Saturn are 318 and 96 Earth masses, respectively, and since a few decades, we know that they mostly consist of hydrogen and helium. It is the mass of heavy elements (all elements heavier than helium) that is not well determined, as well as its distribution within the planets. While the heavy elements are not the dominating materials in Jupiter and Saturn, they are the key for our understanding of their formation and evolution histories. The planetary internal structure is inferred to fit the available observational constraints including the planetary masses, radii, 1-bar temperatures, rotation rates, and gravitational fields. Then, using theoretical equations of states (EOSs) for hydrogen, helium, their mixtures, and heavier elements (typically rocks and/or ices), a structure model is developed. However, there is no unique solution for the planetary structure, and the results depend on the used EOSs and the model assumptions imposed by the modeler. Standard interior models of Jupiter and Saturn include three main regions: (1) the central region (core) that consists of heavy elements, (2) an inner metallic hydrogen envelope that is helium rich, and (3) an outer molecular hydrogen envelope depleted with helium. The distribution of heavy elements can be either homogenous or discontinuous between the two envelopes. Major model assumptions that can affect the derived internal structure include the number of layers, the heat transport mechanism within the planet (and its entropy), the nature of the core (compact vs. diluted), and the location/pressure where the envelopes are divided. Alternative structure models assume a less distinct division between the layers and/or a less non-homogenous distribution of the heavy

  16. Interior point decoding for linear vector channels

    Energy Technology Data Exchange (ETDEWEB)

    Wadayama, T [Nagoya Institute of Technology, Gokiso, Showa-ku, Nagoya, Aichi, 466-8555 (Japan)], E-mail: wadayama@nitech.ac.jp

    2008-01-15

    In this paper, a novel decoding algorithm for low-density parity-check (LDPC) codes based on convex optimization is presented. The decoding algorithm, called interior point decoding, is designed for linear vector channels. The linear vector channels include many practically important channels such as inter-symbol interference channels and partial response channels. It is shown that the maximum likelihood decoding (MLD) rule for a linear vector channel can be relaxed to a convex optimization problem, which is called a relaxed MLD problem.

  17. Multiplexed LC-MS/MS analysis of horse plasma proteins to study doping in sport.

    Science.gov (United States)

    Barton, Chris; Beck, Paul; Kay, Richard; Teale, Phil; Roberts, Jane

    2009-06-01

    The development of protein biomarkers for the indirect detection of doping in horse is a potential solution to doping threats such as gene and protein doping. A method for biomarker candidate discovery in horse plasma is presented using targeted analysis of proteotypic peptides from horse proteins. These peptides were first identified in a novel list of the abundant proteins in horse plasma. To monitor these peptides, an LC-MS/MS method using multiple reaction monitoring was developed to study the quantity of 49 proteins in horse plasma in a single run. The method was optimised and validated, and then applied to a population of race-horses to study protein variance within a population. The method was finally applied to longitudinal time courses of horse plasma collected after administration of an anabolic steroid to demonstrate utility for hypothesis-driven discovery of doping biomarker candidates.

  18. New model for the lunar interior to 250 km

    International Nuclear Information System (INIS)

    Piwinskii, A.J.; Duba, A.G.

    1975-01-01

    A new model for the structure of the lunar interior to about a 250-km depth is proposed. It is suggested that this region is composed of plagioclase-bearing rocks, and that the 65-km seismic discontinuity represents the appearance of garnet. A variety of rock types mainly composed of plagioclase, pyroxene, olivine and garnet is envisioned, with at least half of the outer 250 km of the moon made of plagioclase, which dominates the electrical conductivity. This model agrees with recent petrological and electrical conductivity results and does not violate velocity-depth profiles obtained from elastic-wave studies of lunar and terrestrial materials. (U.S.)

  19. Development of a lectin binding assay to differentiate between recombinant and endogenous proteins in pharmacokinetic studies of protein-biopharmaceuticals.

    Science.gov (United States)

    Weber, Alfred; Minibeck, Eva; Scheiflinger, Friedrich; Turecek, Peter L

    2015-04-10

    Human glycoproteins, expressed in hamster cell lines, show similar glycosylation patterns to naturally occurring human molecules except for a minute difference in the linkage of terminal sialic acid: both cell types lack α2,6-galactosyl-sialyltransferase, abundantly expressed in human hepatocytes and responsible for the α2,6-sialylation of circulating glycoproteins. This minute difference, which is currently not known to have any physiological relevance, was the basis for the selective measurement of recombinant glycoproteins in the presence of their endogenous counterparts. The assay is based on using the lectin Sambucus nigra agglutinin (SNA), selectively binding to α2,6-sialylated N-glycans. Using von Willebrand factor (VWF), factor IX (FIX), and factor VIIa (FVIIa), it was demonstrated that (i) the plasma-derived proteins, but not the corresponding recombinant proteins, specifically bind to SNA and (ii) this binding can be used to deplete the plasma-derived proteins. The feasibility of this approach was confirmed in spike-recovery studies for all three recombinant coagulation proteins in human plasma and for recombinant VWF (rVWF) in macaque plasma. Analysis of plasma samples from macaques after administration of recombinant and a plasma-derived VWF demonstrated the suitability and robustness of this approach. Data showed that rVWF could be selectively measured without changing the ELISAs and furthermore revealed the limitations of baseline adjustment using a single measurement of the predose concentration only. The SNA gel-based depletion procedure can easily be integrated in existing procedures as a specific sample pre-treatment step. While ELISA-based methods were used to measure the recombinant coagulation proteins in the supernatants obtained by depletion, this procedure is applicable for all biochemical analyses. Copyright © 2015 Elsevier B.V. All rights reserved.

  20. QM/MM Molecular Dynamics Studies of Metal Binding Proteins

    Directory of Open Access Journals (Sweden)

    Pietro Vidossich

    2014-07-01

    Full Text Available Mixed quantum-classical (quantum mechanical/molecular mechanical (QM/MM simulations have strongly contributed to providing insights into the understanding of several structural and mechanistic aspects of biological molecules. They played a particularly important role in metal binding proteins, where the electronic effects of transition metals have to be explicitly taken into account for the correct representation of the underlying biochemical process. In this review, after a brief description of the basic concepts of the QM/MM method, we provide an overview of its capabilities using selected examples taken from our work. Specifically, we will focus on heme peroxidases, metallo-β-lactamases, α-synuclein and ligase ribozymes to show how this approach is capable of describing the catalytic and/or structural role played by transition (Fe, Zn or Cu and main group (Mg metals. Applications will reveal how metal ions influence the formation and reduction of high redox intermediates in catalytic cycles and enhance drug metabolism, amyloidogenic aggregate formation and nucleic acid synthesis. In turn, it will become manifest that the protein frame directs and modulates the properties and reactivity of the metal ions.

  1. Dietary protein is associated with musculoskeletal health independently of dietary pattern: the Framingham Third Generation Study.

    Science.gov (United States)

    Mangano, Kelsey M; Sahni, Shivani; Kiel, Douglas P; Tucker, Katherine L; Dufour, Alyssa B; Hannan, Marian T

    2017-03-01

    Background: Above-average dietary protein, as a single nutrient, improves musculoskeletal health. Evaluating the link between dietary protein and musculoskeletal health from a whole-diet perspective is important, as dietary guidelines focus on dietary patterns. Objective: We examined the prospective association of novel dietary protein food clusters (derived from established dietary pattern techniques) with appendicular lean mass (ALM), quadriceps strength (QS), and bone mineral density (BMD) in 2986 men and women, aged 19-72 y, from the Framingham Third Generation Study. Design: Total protein intake was estimated by food-frequency questionnaire in 2002-2005. A cluster analysis was used to classify participants into mutually exclusive groups, which were determined by using the percentage of contribution of food intake to overall protein intake. General linear modeling was used to 1 ) estimate the association between protein intake (grams per day) and BMD, ALM, appendicular lean mass normalized for height (ALM/ht 2 ), and QS (2008-2011) and to 2 ) calculate adjusted least-squares mean outcomes across quartiles of protein (grams per day) and protein food clusters. Results: The mean ± SD age of subjects was 40 ± 9 y; 82% of participants met the Recommended Daily Allowance (0.8 g · kg body weight -1 · d -1 ). The following 6 dietary protein food clusters were identified: fast food and full-fat dairy, fish, red meat, chicken, low-fat milk, and legumes. BMD was not different across quartiles of protein intake ( P -trend range = 0.32-0.82); but significant positive trends were observed for ALM, ALM/ht 2 ( P dietary protein is associated with ALM and QS but not with BMD. In this study, dietary protein food patterns do not provide further insight into beneficial protein effects on muscle outcomes. © 2017 American Society for Nutrition.

  2. Special Features of Using Secondary Materials in the Interior Design of Public Dining Establishments

    Science.gov (United States)

    Kuznetsova, Irina; Hapchuk, Olena; Lukinov, Vitaly

    2017-10-01

    This article analyses the latest publications studying the use and practical application of secondary resources as raw materials in design. This analysis is based on the list of secondary resources and their applications in interior decoration. In particular, the interiors of public catering enterprises were analysed. Restaurants with different functional purposes that were classified into several categories with specific peculiarities of interior design were identified. This article presents and describes different types of public catering enterprises based on those categories. The interior design of a public catering enterprise is regarded as a considerably complex system. Different types of secondary materials were reviewed to identify the most frequently used materials for interior space design. This article describes the main peculiarities of the use of secondary materials and presents examples of their practical application. The function of secondary materials in the interior design of public catering enterprises were detected and reviewed. On the basis of the analysis, several directions for the practical application of our results in the field of public catering enterprise design were suggested.

  3. Differential proteomics study of platelets in asymptomatic constitutional macrothrombocytopenia: altered levels of cytoskeletal proteins.

    Science.gov (United States)

    Karmakar, Shilpita; Saha, Sutapa; Banerjee, Debasis; Chakrabarti, Abhijit

    2015-01-01

    Harris platelet syndrome (HPS), also known as asymptomatic constitutional macrothrombocytopenia (ACMT), is an autosomal dominant platelet disorder characterized by mild-to-severe thrombocytopenia and giant platelets with normal platelet aggregation and absence of bleeding symptoms. We have attempted a comparative proteomics study for profiling of platelet proteins in healthy vs. pathological states to discover characteristic protein expression changes in macrothrombocytes and decipher the factors responsible for the functionally active yet morphologically distinct platelets. We have used 2-D gel-based protein separation techniques coupled with MALDI-ToF/ToF-based mass spectrometric identification and characterization of the proteins to investigate the differential proteome profiling of platelet proteins isolated from the peripheral blood samples of patients and normal volunteers. Our study revealed altered levels of actin-binding proteins such as myosin light chain, coactosin-like protein, actin-related protein 2/3 complex, and transgelin2 that hint toward the cytoskeletal changes necessary to maintain the structural and functional integrity of macrothrombocytes. We have also observed over expressed levels of peroxiredoxin2 that signifies the prevailing oxidative stress in these cells. Additionally, altered levels of protein disulfide isomerase and transthyretin provide insights into the measures adapted by the macrothrombocytes to maintain their normal functional activity. This first proteomics study of platelets from ACMT may provide an understanding of the structural stability and normal functioning of these platelets in spite of their large size. © 2014 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

  4. Effective protein extraction protocol for proteomics studies of Jerusalem artichoke leaves.

    Science.gov (United States)

    Zhang, Meide; Shen, Shihua

    2013-07-01

    Protein extraction is a crucial step for proteomics studies. To establish an effective protein extraction protocol suitable for two-dimensional electrophoresis (2DE) analysis in Jerusalem artichoke (Helianthus tuberosus L.), three different protein extraction methods-trichloroacetic acid/acetone, Mg/NP-40, and phenol/ammonium acetate-were evaluated using Jerusalem artichoke leaves as source materials. Of the three methods, trichloroacetic acid/acetone yielded the best protein separation pattern and highest number of protein spots in 2DE analysis. Proteins highly abundant in leaves, such as Rubisco, are typically problematic during leaf 2DE analysis, however, and this disadvantage was evident using trichloroacetic acid/acetone. To reduce the influence of abundant proteins on the detection of low-abundance proteins, we optimized the trichloroacetic acid/acetone method by incorporating a PEG fractionation approach. After optimization, 363 additional (36.2%) protein spots were detected on the 2DE gel. Our results suggest that trichloroacetic acid/acetone method is a better protein extraction technique than Mg/NP-40 and phenol/ammonium acetate in Jerusalem artichoke leaf 2DE analysis, and that trichloroacetic acid/acetone method combined with PEG fractionation procedure is the most effective approach for leaf 2DE analysis of Jerusalem artichoke. © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  5. Using isoelectric focussing and neutron activation analysis to study protein-bound tracer elements

    International Nuclear Information System (INIS)

    Schmelzer, W.

    1976-01-01

    A method to determine protein-bound tracer elements was determined by combining a protein separation method with neutron activation analysis. Gel filtration, disk electrophoresis, and isoelectric focussing were studied with regard to their suitability as separation methods. Using isoelectric focussing, human serum protein could be separated with good resolution on a preparative scale. The Se, Cr, Ag, Sc, Fe, Zn, Co, Br, Na, Rb, and Cs contents of the various protein fractions were determined by instrumental neutron activation analysis and by gamma-spectroscopic identification of their long-lived nuclides. Particular attention was paid to the main source of error with this method, i.e. contamination of the proteins in the course of the separation process. Information on the binding of the elements to protein was obtained by comparing the contents in the serum and in the protein separated by gel chromatography. For example, 75% of the Se and 30% of the Cs are bound to protein. Contamination of the protein fractions was studied by means of tracer elements with the element Se, errors due to contamination could be ruled out. The method was modified for the special imvestigation of Se-protein complexes in the serum. The Se content was determined by activation analysis via the short-lived radionuclide sup(77m)Se, this considerably reducing the duration of analysis. With regard to focussing, discrimination was improved in the pH region in which specific Se complexes were found. The activity distribution in fractionated serum protein labelled in vitro with 75 Se in the presence of erythrocytes showed that specific labelling is possible in this way. It is thus possible to study the distribution of Se carrier proteins with the aid of a radiotracer technique. (orig./RB) [de

  6. Identification of stress responsive genes by studying specific relationships between mRNA and protein abundance.

    Science.gov (United States)

    Morimoto, Shimpei; Yahara, Koji

    2018-03-01

    Protein expression is regulated by the production and degradation of mRNAs and proteins but the specifics of their relationship are controversial. Although technological advances have enabled genome-wide and time-series surveys of mRNA and protein abundance, recent studies have shown paradoxical results, with most statistical analyses being limited to linear correlation, or analysis of variance applied separately to mRNA and protein datasets. Here, using recently analyzed genome-wide time-series data, we have developed a statistical analysis framework for identifying which types of genes or biological gene groups have significant correlation between mRNA and protein abundance after accounting for potential time delays. Our framework stratifies all genes in terms of the extent of time delay, conducts gene clustering in each stratum, and performs a non-parametric statistical test of the correlation between mRNA and protein abundance in a gene cluster. Consequently, we revealed stronger correlations than previously reported between mRNA and protein abundance in two metabolic pathways. Moreover, we identified a pair of stress responsive genes ( ADC17 and KIN1 ) that showed a highly similar time series of mRNA and protein abundance. Furthermore, we confirmed robustness of the analysis framework by applying it to another genome-wide time-series data and identifying a cytoskeleton-related gene cluster (keratin 18, keratin 17, and mitotic spindle positioning) that shows similar correlation. The significant correlation and highly similar changes of mRNA and protein abundance suggests a concerted role of these genes in cellular stress response, which we consider provides an answer to the question of the specific relationships between mRNA and protein in a cell. In addition, our framework for studying the relationship between mRNAs and proteins in a cell will provide a basis for studying specific relationships between mRNA and protein abundance after accounting for potential

  7. Conditional stability for a single interior measurement

    International Nuclear Information System (INIS)

    Honda, Naofumi; McLaughlin, Joyce; Nakamura, Gen

    2014-01-01

    An inverse problem to identify unknown coefficients of a partial differential equation by a single interior measurement is considered. The equation considered in this paper is a strongly elliptic second order scalar equation which can have complex coefficients in a bounded domain with C 2 boundary. We are given a single interior measurement. This means that we know a given solution of the forward equation in this domain. The equation includes some model equations arising from acoustics, viscoelasticity and hydrology. We assume that the coefficients are piecewise analytic. Our major result is the local Hölder stability estimate for identifying the unknown coefficients. If the unknown coefficient is a complex coefficient in the principal part of the equation, we assumed a condition which we name admissibility assumption for the real part and imaginary part of the difference of two complex coefficients. This admissibility assumption is automatically satisfied if the complex coefficients are real valued. For identifying either the real coefficient in the principal part or the coefficient of the 0th order of the equation, the major result implies global uniqueness for the identification. (paper)

  8. A study of the thermal denaturation of the S-layer protein from Lactobacillus salivarius

    Science.gov (United States)

    Lighezan, Liliana; Georgieva, Ralitsa; Neagu, Adrian

    2012-09-01

    Surface layer (S-layer) proteins display an intrinsic self-assembly property, forming monomolecular crystalline arrays, identified in outermost structures of the cell envelope in many organisms, such as bacteria and archaea. Isolated S-layer proteins also possess the ability to recrystallize into regular lattices, being used in biotechnological applications, such as controlling the architecture of biomimetic surfaces. To this end, the stability of the S-layer proteins under high-temperature conditions is very important. In this study, the S-layer protein has been isolated from Lactobacillus salivarius 16 strain of human origin, and purified by cation-exchange chromatography. Using circular dichroism (CD) spectroscopy, we have investigated the thermal denaturation of the S-layer protein. The far- and near-UV CD spectra have been collected, and the temperature dependence of the CD signal in these spectral domains has been analyzed. The variable temperature results show that the secondary and tertiary structures of the S-layer protein change irreversibly due to the heating of the sample. After the cooling of the heated protein, the secondary and tertiary structures are partially recovered. The denaturation curves show that the protein unfolding depends on the sample concentration and on the heating rate. The secondary and tertiary structures of the protein suffer changes in the same temperature range. We have also detected an intermediate state in the protein denaturation pathway. Our results on the thermal behavior of the S-layer protein may be important for the use of S-layer proteins in biotechnological applications, as well as for a better understanding of the structure and function of S-layer proteins.

  9. Dynamics of proteins and of their hydration layer studied by neutron scattering and additional biophysical methods

    International Nuclear Information System (INIS)

    Gallat, Francois-Xavier

    2011-01-01

    This thesis work focused on the dynamics of proteins, surrounded by their hydration layer, a water shell around the protein vital for its biological function. Each of these components is accompanied by a specific dynamics which union reforms the complex energy landscape of the system. The joint implementation of selective deuteration, incoherent neutron scattering and tera-hertz spectroscopy allowed to explore the dynamics of proteins and that of the hydration shell. The influence of the folding state of protein on its dynamics has been studied by elastic neutron scattering. Globular proteins were less dynamic than its intrinsically disordered analogues. Themselves appear to be stiffer than non-physiological unfolded proteins. The oligomerization state and the consequences on the dynamics were investigated. Aggregates of a globular protein proved to be more flexible than the soluble form. In contrast, aggregates of a disordered protein showed lower average dynamics compared to the soluble form. These observations demonstrate the wide range of dynamics among the proteome. Incoherent neutron scattering experiences on the hydration layer of globular and disordered proteins have yielded information on the nature of water motion around these proteins. The measurements revealed the presence of translational motions concomitant with the onset of the transition dynamics of hydration layers, at 220 K. Measurements have also shown a stronger coupling between a disordered protein and its hydration water, compared to a globular protein and its hydration shell. The nature of the hydration layer and its influence on its dynamics has been explored with the use of polymers that mimic the water behavior and that act as a source of flexibility for the protein. Eventually, the dynamics of methyl groups involved in the dynamical changes observed at 150 and 220 K, was investigated. (author) [fr

  10. Density functional study of molecular interactions in secondary structures of proteins.

    Science.gov (United States)

    Takano, Yu; Kusaka, Ayumi; Nakamura, Haruki

    2016-01-01

    Proteins play diverse and vital roles in biology, which are dominated by their three-dimensional structures. The three-dimensional structure of a protein determines its functions and chemical properties. Protein secondary structures, including α-helices and β-sheets, are key components of the protein architecture. Molecular interactions, in particular hydrogen bonds, play significant roles in the formation of protein secondary structures. Precise and quantitative estimations of these interactions are required to understand the principles underlying the formation of three-dimensional protein structures. In the present study, we have investigated the molecular interactions in α-helices and β-sheets, using ab initio wave function-based methods, the Hartree-Fock method (HF) and the second-order Møller-Plesset perturbation theory (MP2), density functional theory, and molecular mechanics. The characteristic interactions essential for forming the secondary structures are discussed quantitatively.

  11. Study on REE bound proteins in natural plant fern dicranopteris dichotomy by MAA

    International Nuclear Information System (INIS)

    Guo Fanqing; Wang Yuqi; Sun Jingxing; Chen Hongmin; Xu Lei; Cao Guoyin

    1997-01-01

    Biochemical techniques, including pH variation, outsalting, ultracentrifugation, gel filtration chromatography and electrophoresis, etc., have been employed together with instrumental neutron activation analysis (INAA) to study the rare earth elements (REE) bound proteins in the natural plant fern, Dicranopteris dichotomy. INAA was also used to identify whether the proteins were bound firmly with REE. The results obtained show that two REE bound proteins (RBP-I and RBP-II) have been separated. The molecular mass (molecular weight, MW) of RBP-I on Sephadex G-200 gel column is about 8 x 10 5 and that of RBP-II is less than 12400, respectively. However, SDS-PAGE of the two proteins shows that they mainly have two protein subunits with MW 14100 and 38700. They are probably conjugated proteins, glycoproteins with different glycol-units

  12. [Drosophila melanogaster as a model for studying the function of animal viral proteins].

    Science.gov (United States)

    Omelianchuk, L V; Iudina, O S

    2011-07-01

    Studies in which Drosophila melanogaster individuals carrying transgenes of animal viruses were used to analyze the action of animal viral proteins on the cell are reviewed. The data presented suggest that host specificity of viruses is determined by their proteins responsible for the penetration of the virus into the cell, while viral proteins responsible for interactions with the host cell are much less host-specific. Due to this, the model of Drosophila with its developed system of searching for genetic interactions can be used to find intracellular targets for the action of viral proteins of the second group.

  13. Preparation of fluorescence quenched libraries containing interchain disulphide bonds for studies of protein disulphide isomerases

    DEFF Research Database (Denmark)

    Spetzler, J C; Westphal, V; Winther, Jakob R.

    1998-01-01

    Protein disulphide isomerase is an enzyme that catalyses disulphide redox reactions in proteins. In this paper, fluorogenic and interchain disulphide bond containing peptide libraries and suitable substrates, useful in the study of protein disulphide isomerase, are described. In order to establish...... the quenching chromophore (Tyr(NO2)) and Cys(pNpys) activated for reaction with a second thiol. The formation and cleavage of the interchain disulphide bonds in the library were monitored under a fluorescence microscope. Substrates to investigate the properties of protein disulphide isomerase in solution were...

  14. Polyacrylamide gel electrophoresis-SDS as a tool to study myofibrillar proteins. A review.

    Directory of Open Access Journals (Sweden)

    Perez-Chabela, M. Lourdes

    2015-12-01

    Full Text Available Miofibrillar proteins are part of land and sea animals’ muscle. Nonetheless, even when muscle proteins are the same type of proteins, their structure, rigor mortis time, and biochemical process associated to muscle to meat conversion, are different among animal species. This review has the aim to describe the advantages of SDS-polyacrylamide gel electrophoresis (SDS-PAGE in the study of myofibrillar proteins structure, besides the influence of many parameters on this technique to obtain an electrophoretic profile. Applications of this technique as a diagnostic tool in the food science, ecology and health are described as well.

  15. The Flexibility Imperative, the Transformation of the Building, and the “Unbecoming” of the Traditional Interior

    Directory of Open Access Journals (Sweden)

    Lubomir Popov

    2016-12-01

    Full Text Available A shift toward the post-modern in the humanities has fostered novel discourses on spatial phenomena including the production of space, the spatialization of society and culture, and the becoming of interiors. A recent debate on the unbecoming of interior had both puzzled me and encouraged me to explore further and to reinterpret emerging ideas in the interior design academic community. These new developments generate opportunities for investigating spatial phenomena in unconventional and novel ways, construing them as products of changing social practices rather than technical action or artistic serendipity. The problem of this study is the unbecoming of interior as a result of the new sociocultural realities. These realities have led to the unbecoming of the conventional building and in effect, the unbecoming of the interior the way society construes it today. The methodology utilizes a Symbolic Interactionist perspective and a case study approach. The paper interprets the becoming and unbecoming of interior as a dialectical processes of developing and changing relationships between types of spatialities and human agency with respect to particular sociocultural context. The findings highlight how the concerns with social indeterminacy and unpredictability translate into a requirement for building flexibility and then into the unbecoming of conventional spatial paradigms and the interior the way we know it today. These ideas spur questions about the nature and purpose of buildings and interiors, the relationships between them, and the role of impending cultures in the production of new kinds of spatialities.

  16. Room temperature phosphorescence study on the structural flexibility of single tryptophan containing proteins

    Science.gov (United States)

    Kowalska-Baron, Agnieszka; Gałęcki, Krystian; Wysocki, Stanisław

    2015-01-01

    In this study, we have undertaken efforts to find correlation between phosphorescence lifetimes of single tryptophan containing proteins and some structural indicators of protein flexibility/rigidity, such as the degree of tryptophan burial or its exposure to solvent, protein secondary and tertiary structure of the region of localization of tryptophan as well as B factors for tryptophan residue and its immediate surroundings. Bearing in mind that, apart from effective local viscosity of the protein/solvent matrix, the other factor that concur in determining room temperature tryptophan phosphorescence (RTTP) lifetime in proteins is the extent of intramolecular quenching by His, Cys, Tyr and Trp side chains, the crystallographic structures derived from the Brookhaven Protein Data Bank were also analyzed concentrating on the presence of potentially quenching amino acid side chains in the close proximity of the indole chromophore. The obtained results indicated that, in most cases, the phosphorescence lifetimes of tryptophan containing proteins studied tend to correlate with the above mentioned structural indicators of protein rigidity/flexibility. This correlation is expected to provide guidelines for the future development of phosphorescence lifetime-based method for the prediction of structural flexibility of proteins, which is directly linked to their biological function.

  17. Correlation of gene expression and protein production rate - a system wide study

    Directory of Open Access Journals (Sweden)

    Arvas Mikko

    2011-12-01

    Full Text Available Abstract Background Growth rate is a major determinant of intracellular function. However its effects can only be properly dissected with technically demanding chemostat cultivations in which it can be controlled. Recent work on Saccharomyces cerevisiae chemostat cultivations provided the first analysis on genome wide effects of growth rate. In this work we study the filamentous fungus Trichoderma reesei (Hypocrea jecorina that is an industrial protein production host known for its exceptional protein secretion capability. Interestingly, it exhibits a low growth rate protein production phenotype. Results We have used transcriptomics and proteomics to study the effect of growth rate and cell density on protein production in chemostat cultivations of T. reesei. Use of chemostat allowed control of growth rate and exact estimation of the extracellular specific protein production rate (SPPR. We find that major biosynthetic activities are all negatively correlated with SPPR. We also find that expression of many genes of secreted proteins and secondary metabolism, as well as various lineage specific, mostly unknown genes are positively correlated with SPPR. Finally, we enumerate possible regulators and regulatory mechanisms, arising from the data, for this response. Conclusions Based on these results it appears that in low growth rate protein production energy is very efficiently used primarly for protein production. Also, we propose that flux through early glycolysis or the TCA cycle is a more fundamental determining factor than growth rate for low growth rate protein production and we propose a novel eukaryotic response to this i.e. the lineage specific response (LSR.

  18. Contribution to the study of proteins and peptides structure by hydrogen isotopic exchange

    International Nuclear Information System (INIS)

    Nabedryk-Viala, Eliane.

    1978-01-01

    Development of hydrogen exchange measurement methods to study the structure and the molecular interaction of globular protein molecules in aqueous solution (ribonuclease A, cytochrome c, coupling factors of chloroplasts), in peptide hormones in trifluoroethanol solution (angiotensin II, corticotropin) and in proteins of membranes (rhodopsin) [fr

  19. The interaction of M13 coat protein with lipid bilayers : a spectroscopic study

    NARCIS (Netherlands)

    Sanders, J.C.

    1992-01-01

    In this thesis a small part of the reproductive cycle of the M13 bacteriophage is studied in more detail, namely the interaction of the major coat protein (MW 5240) with lipid bilayers. During the infection process is the major coat protein of M13 bacteriophage stored in the cytoplasm

  20. Protein Intake and Mobility Limitation in Community-Dwelling Older Adults: the Health ABC Study

    NARCIS (Netherlands)

    Houston, Denise K.; Tooze, Janet A.; Garcia, Katelyn; Visser, Marjolein; Rubin, Susan; Harris, Tamara B.; Newman, Anne B.; Kritchevsky, Stephen B.

    OBJECTIVES: The current Recommended Dietary Allowance (RDA) for protein is based on short-term nitrogen balance studies in young adults and may underestimate the amount needed to optimally preserve physical function in older adults. We examined the association between protein intake and the onset of

  1. Solution scattering studies on a virus capsid protein as a building block for nanoscale assemblies

    NARCIS (Netherlands)

    Comellas Aragones, M.; Comellas-Aragones, Marta; Sikkema, Friso D.; Delaittre, Guillaume; Terry, Ann E.; King, Stephen M.; Visser, Dirk; Heenan, Richard K.; Nolte, Roeland J.M.; Cornelissen, Jeroen Johannes Lambertus Maria; Feiters, Martin C.

    2011-01-01

    Self-assembled protein cages are versatile building blocks in the construction of biomolecular nanostructures. Because of the defined assembly behaviour the cowpea chlorotic mottle virus (CCMV) protein is often used for such applications. Here we report a detailed solution scattering study of the

  2. Proteomic study on the stability of proteins in bovine, camel, and caprine milk sera after processing

    NARCIS (Netherlands)

    Zhang, Lina; Boeren, Sjef; Smits, Marcel; Hooijdonk, van Toon; Vervoort, Jacques; Hettinga, Kasper

    2016-01-01

    Milk proteins have been shown to be very sensitive to processing. This study aims to investigate the changes of the bovine, camel, and caprine milk proteins after freezing, pasteurization (62 °C, 30 min), and spray drying by proteomic techniques, filter-aided sample preparation (FASP) and

  3. Citrulline stimulates muscle protein synthesis in the post-absorptive state in healthy people fed a low-protein diet – A pilot study

    Science.gov (United States)

    Jourdan, Marion; Nair, K. Sreekumaran; Carter, Rickey E.; Schimke, Jill; Ford, G. Charles; Marc, Julie; Aussel, Christian; Cynober, Luc

    2015-01-01

    Background and Aims Amino acid (AA) availability is critical to maintain protein homeostasis and reduced protein intake causes a decline in protein synthesis. Citrulline, an amino acid metabolite, has been reported to stimulate muscle protein synthesis in malnourished rats. Methods To determine whether citrulline stimulates muscle protein synthesis in healthy adults while on a low-protein diet, we studied 8 healthy participants twice in a cross-over study design. Following a 3-days of low-protein intake, either citrulline or a non-essential AA mixture (NEAA) was given orally as small boluses over the course of 8 hours. [ring-13C6] phenylalanine and [15N] tyrosine were administered as tracers to assess protein metabolism. Fractional synthesis rates (FSR) of muscle proteins were measured using phenylalanine enrichment in muscle tissue fluid as the precursor pool. Results FSR of mixed muscle protein was higher during the administration of citrulline than during NEAA (NEAA: 0.049 ± 0.005; citrulline: 0.060 ± 0.006; p=0.03), while muscle mitochondrial protein FSR and whole-body protein turnover were not different between the studies. Citrulline administration increased arginine and ornithine plasma concentrations without any effect on glucose, insulin, C-peptide, and IGF-1 levels. Citrulline administration did not promote mitochondria protein synthesis, transcripts, or citrate synthesis. Conclusions Citrulline ingestion enhances mixed muscle protein synthesis in healthy participants on 3-day low-protein intake. This anabolic action of citrulline appears to be independent of insulin action and may offer potential clinical application in conditions involving low amino acid intake. PMID:24972455

  4. Citrulline stimulates muscle protein synthesis in the post-absorptive state in healthy people fed a low-protein diet - A pilot study.

    Science.gov (United States)

    Jourdan, Marion; Nair, K Sreekumaran; Carter, Rickey E; Schimke, Jill; Ford, G Charles; Marc, Julie; Aussel, Christian; Cynober, Luc

    2015-06-01

    Amino acid (AA) availability is critical to maintain protein homeostasis and reduced protein intake causes a decline in protein synthesis. Citrulline, an amino acid metabolite, has been reported to stimulate muscle protein synthesis in malnourished rats. To determine whether citrulline stimulates muscle protein synthesis in healthy adults while on a low-protein diet, we studied 8 healthy participants twice in a cross-over study design. Following a 3-days of low-protein intake, either citrulline or a non-essential AA mixture (NEAA) was given orally as small boluses over the course of 8 h. [ring-(13)C6] phenylalanine and [(15)N] tyrosine were administered as tracers to assess protein metabolism. Fractional synthesis rates (FSR) of muscle proteins were measured using phenylalanine enrichment in muscle tissue fluid as the precursor pool. FSR of mixed muscle protein was higher during the administration of citrulline than during NEAA (NEAA: 0.049 ± 0.005; citrulline: 0.060 ± 0.006; P = 0.03), while muscle mitochondrial protein FSR and whole-body protein turnover were not different between the studies. Citrulline administration increased arginine and ornithine plasma concentrations without any effect on glucose, insulin, C-peptide, and IGF-1 levels. Citrulline administration did not promote mitochondria protein synthesis, transcripts, or citrate synthesis. Citrulline ingestion enhances mixed muscle protein synthesis in healthy participants on 3-day low-protein intake. This anabolic action of citrulline appears to be independent of insulin action and may offer potential clinical application in conditions involving low amino acid intake. Copyright © 2014. Published by Elsevier Ltd.

  5. Systematic study of plasma and serum proteins in the pig; Etude systematique des proteines plasmatiques et seriques du porc

    Energy Technology Data Exchange (ETDEWEB)

    Daburon, F; Nizza, P; Hatchikian, C; Schmidt, J -P [Commissariat a l' Energie Atomique (France)

    1966-07-01

    This work has been carried out in the framework of the determination of the physiological constants of a normal pig. The aim was to study the serum and plasma proteins of this animal species, the ultimate object being to discover whether the qualitative and quantitative changes in these proteins can make a significant contribution to the establishment of a biological dosimetry for irradiated pigs. The serum and plasma from a normal pig were analyzed first by various simple electrophoretic methods and then by immuno-electrophoresis. As a result of the particular characteristics of pig serum we have gradually been led to make numerous modifications to the techniques used for human serums or for those of small laboratory animals. Much careful work and patience were required in order to obtain reproducible results. (authors) [French] Ce travail se situe dans le cadre de la determination des constantes physiologiques du porc normal. il s'agissait de proceder a l'etude des proteines seriques et plasmatiques de cette espece animale, le but ulterieur etant de savoir si les modifications qualitatives et quantitatives de ces proteines pourront representer une contribution valable a l'etablissement d'une dosimetrie biologique chez le porc irradie. Le serum et le plasma du porc normal ont ete analyses d'abord par diverses methodes electrophoretiques simples puis par immunoelectrophorese. Les caracteristiques particulieres du serum de porc nous ont conduits a apporter progressivement de nombreuses modifications aux techniques utilisees pour des serums humains ou de petits animaux de laboratoire. L'obtention de resultats reproductible a exige beaucoup de patience et de minutie. (auteurs)

  6. Systematic study of plasma and serum proteins in the pig; Etude systematique des proteines plasmatiques et seriques du porc

    Energy Technology Data Exchange (ETDEWEB)

    Daburon, F.; Nizza, P.; Hatchikian, C.; Schmidt, J.-P. [Commissariat a l' Energie Atomique (France)

    1966-07-01

    This work has been carried out in the framework of the determination of the physiological constants of a normal pig. The aim was to study the serum and plasma proteins of this animal species, the ultimate object being to discover whether the qualitative and quantitative changes in these proteins can make a significant contribution to the establishment of a biological dosimetry for irradiated pigs. The serum and plasma from a normal pig were analyzed first by various simple electrophoretic methods and then by immuno-electrophoresis. As a result of the particular characteristics of pig serum we have gradually been led to make numerous modifications to the techniques used for human serums or for those of small laboratory animals. Much careful work and patience were required in order to obtain reproducible results. (authors) [French] Ce travail se situe dans le cadre de la determination des constantes physiologiques du porc normal. il s'agissait de proceder a l'etude des proteines seriques et plasmatiques de cette espece animale, le but ulterieur etant de savoir si les modifications qualitatives et quantitatives de ces proteines pourront representer une contribution valable a l'etablissement d'une dosimetrie biologique chez le porc irradie. Le serum et le plasma du porc normal ont ete analyses d'abord par diverses methodes electrophoretiques simples puis par immunoelectrophorese. Les caracteristiques particulieres du serum de porc nous ont conduits a apporter progressivement de nombreuses modifications aux techniques utilisees pour des serums humains ou de petits animaux de laboratoire. L'obtention de resultats reproductible a exige beaucoup de patience et de minutie. (auteurs)

  7. Some physicochemical and nutritional studies on Karkade (Hibiscus sabdariffa) seed proteins

    International Nuclear Information System (INIS)

    Ahmed, Saif Aldein Bashir

    1998-01-01

    Seeds of Karkade (Al-Rahad variety) were obtained from western Sudan, and investigated perliminary for their chemical composition, the oil of the seed also was investigated. The factors affecting protein extractability such as PH, salt type and concentration and solvent to flour ratio, were studied. The anti nutritional factors investigated were protease inhibitors, gossypol, phytates and tanins, means of inactivation such as heat treatment for trypsin inhibitor and differential solubility for phytates were proposed. Protein fractionation due to solubility was carried out. Other physiochemical properties included polyacrylamide gel electrophersis, ultra violet absorption spectrum and gel filtration pattern. The functional properties investigated were bulk density, solubility, water and oil absorption, emulsifying activity and viscosity. Karkade seed was found to be rich in protein, oil and mineral matter. The amino acid profile of karkade seed proteins indicated the presence of most of essential amino acids in adequate amounts. The relative net protein ratio (RNPR) was found to be 0.75. Protein digestibility-corrected amino acid score of karkade seed protein was found to be 0.63 ( compared to casein in 1.0). The molecular weights of the protein fractions investigated by SDS- PAGE were in the range of 12-82 kDa. UV absorption spectra reflects changes in the molecular structure (native proteins absorb at 280 nm and also interaction with other components e.g. nucleic acids, poly phenols.....etc). Gel filtration pattern reflect changes in molecular size

  8. Biochemical studies on gamma irradiated male rats fed on whey protein concentrate

    International Nuclear Information System (INIS)

    Mohamed, N.E; Anwar, M.M.; El-bostany, N.A.

    2010-01-01

    This study carried out to investigate the possible role of whey protein protein concentrate in ameliorating some biochemical disorders induced in gamma irradiated male rats. Forty eight male albino rats were divided into four equal groups: Group 1 fed on normal diet during experimental period. Group 2 where the diet contain 15 % whey protein concentrate instead of soybean protein . Group 3 rats were exposed to whole body gamma radiation with single dose of 5 Gy and fed on the normal diet. Group 4 rate exposed to 5 Gy then fed on diet contain 15 % whey protein concentrate, the rats were decapitated after two and four weeks post irradiation. Exposure to whole body irradiation caused significant elevation of serum ALT, AST, glucose, urea, creatinine and total triiodothyronine with significant decrease in total protein, albumin and thyroxin. Irradiated rats fed on whey protein concentrate revealed significant improvement of some biochemical parameters. It could be conclude that whey protein concentrate may be considered as a useful protein source for reducing radiation injury via metabolic pathway.

  9. Magnetic resonance studies of isotopically labeled paramagnetic proteins: (2FE-2S) ferredoxins

    Energy Technology Data Exchange (ETDEWEB)

    Cheng, H.; Xia, B.; Chae, Y.K.; Westler, W.M.; Markley, J.L. [Univ. of Wisconsin, Madison, WI (United States)

    1994-12-01

    Recent developments in NMR spectroscopy, especially multidimensional, multinuclear NMR techniques, have made NMR the most versatile tool available for studying protein structure and function in solution. Unlike diamagnetic proteins, paramagnetic proteins contain centers with unpaired electrons. These unpaired electrons interact with magnetic nuclei either through chemical bonds by a contact mechanism or through space by a pseudocontact mechanism. Such interactions make the acquisition and analysis of NMR spectra of paramagnetic proteins more challenging than those of diamagnetic proteins. Some NMR signals from paramagnetic proteins are shifted outside the chemical shift region characteristic of diamagnetic proteins; these {open_quotes}hyperfine-shifted{close_quotes} resonances originate from nuclei that interact with unpaired electrons from the paramagnetic center. The large chemical shift dispersion in spectra of paramagnetic proteins makes it difficult to excite the entire spectral window and leads to distortions in the baseline. Interactions with paramagnetic centers shorten T{sub 1} and T{sub 2} relaxation times of nuclei; the consequences are line broadening and lower spectral sensitivity. Scalar (through bond) and dipolar (through space) interactions between pairs of nuclei are what give rise to crosspeak signals in multi-dimensional NMR spectra of small diamagnetic proteins. When such interactions involve a nucleus that is strongly relaxed by interaction with a paramagnetic center, specialized methods may be needed for its detection or it may be completely undetectable by present nD NMR methods.

  10. Some physicochemical and nutritional studies on Karkade (Hibiscus sabdariffa) seed proteins

    Energy Technology Data Exchange (ETDEWEB)

    Ahmed, Saif Aldein Bashir [Department of Food Science and Technology, Faculty of Agriculture, University of Khartoum, Khatroum (Sudan)

    1998-01-01

    Seeds of Karkade (Al-Rahad variety) were obtained from western Sudan, and investigated perliminary for their chemical composition, the oil of the seed also was investigated. The factors affecting protein extractability such as PH, salt type and concentration and solvent to flour ratio, were studied. The anti nutritional factors investigated were protease inhibitors, gossypol, phytates and tanins, means of inactivation such as heat treatment for trypsin inhibitor and differential solubility for phytates were proposed. Protein fractionation due to solubility was carried out. Other physiochemical properties included polyacrylamide gel electrophersis, ultra violet absorption spectrum and gel filtration pattern. The functional properties investigated were bulk density, solubility, water and oil absorption, emulsifying activity and viscosity. Karkade seed was found to be rich in protein, oil and mineral matter. The amino acid profile of karkade seed proteins indicated the presence of most of essential amino acids in adequate amounts. The relative net protein ratio (RNPR) was found to be 0.75. Protein digestibility-corrected amino acid score of karkade seed protein was found to be 0.63 ( compared to casein in 1.0). The molecular weights of the protein fractions investigated by SDS- PAGE were in the range of 12-82 kDa. UV absorption spectra reflects changes in the molecular structure (native proteins absorb at 280 nm and also interaction with other components e.g. nucleic acids, poly phenols.....etc). Gel filtration pattern reflect changes in molecular size. 204 refs. , 35 tabs. , 8 figs.

  11. Conformationally Preorganized Diastereomeric Norbornane-Based Maltosides for Membrane Protein Study

    DEFF Research Database (Denmark)

    Das, Manabendra; Du, Yang; Ribeiro, Orquidea

    2017-01-01

    were generally better at stabilizing membrane proteins than short alkyl chain agents. Furthermore, use of one well-behaving NBM enabled us to attain a marked stabilization and clear visualization of a challenging membrane protein complex using electron microscopy. Thus, this study not only describes......Detergents are essential tools for functional and structural studies of membrane proteins. However, conventional detergents are limited in their scope and utility, particularly for eukaryotic membrane proteins. Thus, there are major efforts to develop new amphipathic agents with enhanced properties....... Here, a novel class of diastereomeric agents with a preorganized conformation, designated norbornane-based maltosides (NBMs), were prepared and evaluated for their ability to solubilize and stabilize membrane proteins. Representative NBMs displayed enhanced behaviors compared to n...

  12. On the interior of (quantum) black holes

    International Nuclear Information System (INIS)

    Torres, R.

    2013-01-01

    Different approaches to quantum gravity conclude that black holes may possess an inner horizon, in addition to the (quantum corrected) outer ‘Schwarzschild’ horizon. In this Letter we assume the existence of this inner horizon and explain the physical process that might lead to the tunneling of particles through it. It is shown that the tunneling would produce a flux of particles with a spectrum that deviates from the pure thermal one. Under the appropriate approximation the extremely high temperature of this horizon is calculated for an improved quantum black hole. It is argued that the flux of particles tunneled through the horizons affects the dynamics of the black hole interior leading to an endogenous instability

  13. Interior beam searchlight semi-analytical benchmark

    International Nuclear Information System (INIS)

    Ganapol, Barry D.; Kornreich, Drew E.

    2008-01-01

    Multidimensional semi-analytical benchmarks to provide highly accurate standards to assess routine numerical particle transport algorithms are few and far between. Because of the well-established 1D theory for the analytical solution of the transport equation, it is sometimes possible to 'bootstrap' a 1D solution to generate a more comprehensive solution representation. Here, we consider the searchlight problem (SLP) as a multidimensional benchmark. A variation of the usual SLP is the interior beam SLP (IBSLP) where a beam source lies beneath the surface of a half space and emits directly towards the free surface. We consider the establishment of a new semi-analytical benchmark based on a new FN formulation. This problem is important in radiative transfer experimental analysis to determine cloud absorption and scattering properties. (authors)

  14. Wall grid structure for interior scene synthesis

    KAUST Repository

    Xu, Wenzhuo

    2015-02-01

    We present a system for automatically synthesizing a diverse set of semantically valid, and well-arranged 3D interior scenes for a given empty room shape. Unlike existing work on layout synthesis, that typically knows potentially needed 3D models and optimizes their location through cost functions, our technique performs the retrieval and placement of 3D models by discovering the relationships between the room space and the models\\' categories. This is enabled by a new analytical structure, called Wall Grid Structure, which jointly considers the categories and locations of 3D models. Our technique greatly reduces the amount of user intervention and provides users with suggestions and inspirations. We demonstrate the applicability of our approach on three types of scenarios: conference rooms, living rooms and bedrooms.

  15. La temperatura del interior de la tierra

    Directory of Open Access Journals (Sweden)

    Eslava R. Jesús A.

    1993-10-01

    Full Text Available The problem of defining the Earth interior temperature is analized from Heat Flow observations and the acceptance of convection processes in the mantle. Comparative analyses of thermal, adiabatic, and melting point profiles, allow to obtain the optimum temperature profile, wich fits the seismic model of a liquid external core.

    EI problema de definir la temperatura del interior de la Tierra, se analiza a partir de las observaciones del flujo térmico y la aceptación de procesos de convección en el manto.

    Análisis comparativos de perfiles térmicos, adiabáticos y de puntos de fusión, permiten obtener un perfil óptimo de distribución de temperaturas, que además satisface la observación sísmica de un núcleo externo líquido.

  16. Studies on the protein and sulfur amino acid requirements of young bobwhite quail

    Science.gov (United States)

    Serafin, J.A.

    1977-01-01

    Four experiments were conducted with purified diets to examine the influence of protein level and to estimate the sulfur amino acid (S.A.A.) requirement of young Bobwhite quail (Colinus virginianus). These studies demonstrated (I) that 26% protein was sufficient for rapid growth when the diet was supplemented with methionine; (2) that diets containing higher levels of protein (29.3% and 31.3%) failed to support satisfactory growth unless they contained supplemental methionine; and (3) that young Bobwhite quail require no more than 1.0% sulfur-containing amino acids for optimal growth and efficiency of feed utilization. A fifth experiment was conducted to examine the protein and S.A.A. requirements of young Bobwhite quail using practical rations and to compare results with those obtained with purified diets. Diets containing 24%, 26% and 28% protein were supplied with and without supplemental methionine in a five week study. Results showed significant growth responses to protein and supplemental methionine. Responses showed that Bobwhite quail require no more than 26% protein for maximum growth and efficiency of feed utilization when the S.A.A. level of the diet was approximately 1.0%. The results were in close agreement with those obtained with purified diets. These findings define more precisely than had been known the quantitative requirements of young Bobwhite quail for protein and for the S.A.A. necessary for optimal growth.

  17. Incorporating information on predicted solvent accessibility to the co-evolution-based study of protein interactions.

    Science.gov (United States)

    Ochoa, David; García-Gutiérrez, Ponciano; Juan, David; Valencia, Alfonso; Pazos, Florencio

    2013-01-27

    A widespread family of methods for studying and predicting protein interactions using sequence information is based on co-evolution, quantified as similarity of phylogenetic trees. Part of the co-evolution observed between interacting proteins could be due to co-adaptation caused by inter-protein contacts. In this case, the co-evolution is expected to be more evident when evaluated on the surface of the proteins or the internal layers close to it. In this work we study the effect of incorporating information on predicted solvent accessibility to three methods for predicting protein interactions based on similarity of phylogenetic trees. We evaluate the performance of these methods in predicting different types of protein associations when trees based on positions with different characteristics of predicted accessibility are used as input. We found that predicted accessibility improves the results of two recent versions of the mirrortree methodology in predicting direct binary physical interactions, while it neither improves these methods, nor the original mirrortree method, in predicting other types of interactions. That improvement comes at no cost in terms of applicability since accessibility can be predicted for any sequence. We also found that predictions of protein-protein interactions are improved when multiple sequence alignments with a richer representation of sequences (including paralogs) are incorporated in the accessibility prediction.

  18. Design of tryptophan-containing mutants of the symmetrical Pizza protein for biophysical studies.

    Science.gov (United States)

    Noguchi, Hiroki; Mylemans, Bram; De Zitter, Elke; Van Meervelt, Luc; Tame, Jeremy R H; Voet, Arnout

    2018-03-18

    β-propeller proteins are highly symmetrical, being composed of a repeated motif with four anti-parallel β-sheets arranged around a central axis. Recently we designed the first completely symmetrical β-propeller protein, Pizza6, consisting of six identical tandem repeats. Pizza6 is expected to prove a useful building block for bionanotechnology, and also a tool to investigate the folding and evolution of β-propeller proteins. Folding studies are made difficult by the high stability and the lack of buried Trp residues to act as monitor fluorophores, so we have designed and characterized several Trp-containing Pizza6 derivatives. In total four proteins were designed, of which three could be purified and characterized. Crystal structures confirm these mutant proteins maintain the expected structure, and a clear redshift of Trp fluorescence emission could be observed upon denaturation. Among the derivative proteins, Pizza6-AYW appears to be the most suitable model protein for future folding/unfolding kinetics studies as it has a comparable stability as natural β-propeller proteins. Copyright © 2018 Elsevier Inc. All rights reserved.

  19. Magnetic Fields of Extrasolar Planets: Planetary Interiors and Habitability

    Science.gov (United States)

    Lazio, T. Joseph

    2018-06-01

    Ground-based observations showed that Jupiter's radio emission is linked to its planetary-scale magnetic field, and subsequent spacecraft observations have shown that most planets, and some moons, have or had a global magnetic field. Generated by internal dynamos, magnetic fields are one of the few remote sensing means of constraining the properties of planetary interiors. For the Earth, its magnetic field has been speculated to be partially responsible for its habitability, and knowledge of an extrasolar planet's magnetic field may be necessary to assess its habitability. The radio emission from Jupiter and other solar system planets is produced by an electron cyclotron maser, and detections of extrasolar planetary electron cyclotron masers will enable measurements of extrasolar planetary magnetic fields. Based on experience from the solar system, such observations will almost certainly require space-based observations, but they will also be guided by on-going and near-future ground-based observations.This work has benefited from the discussion and participants of the W. M. Keck Institute of Space Studies "Planetary Magnetic Fields: Planetary Interiors and Habitability" and content within a white paper submitted to the National Academy of Science Committee on Exoplanet Science Strategy. Part of this research was carried out at the Jet Propulsion Laboratory, California Institute of Technology, under a contract with the National Aeronautics and Space Administration.

  20. Studies on protein synthesis by protoplasts of saccharomyces carlsbergensis III. Studies on the specificity and the mechanism of the action of ribonuclease on protein synthesis

    NARCIS (Netherlands)

    Kloet, S.R. de; Dam, G.J.W. van; Koningsberger, V.V.

    1962-01-01

    In this paper, the experimental results are presented of a continued study on the specificity and the mechanism of the inhibition by ribonuclease of protein synthesis in protoplasts of Saccharomyces carlsbergensis. By comparing the effects of native pancreatic ribonuclease with those of

  1. Kajian Estetika Interior Restoran Boncafe Di Jalan Pregolan Surabaya

    OpenAIRE

    Fanuel W., Yemima

    2014-01-01

    Boncafe Pregolan restaurant is a restaurant in Surabaya located at Pregolan Street 2, Tegal sari, Central Surabaya. Boncafe Pregolan restaurant built in 2007. The interior of Boncafe Pregolan restaurant is divided into several rooms, main entrance area, main dining area I, main dining area II, smoking dining area, and terrace dining. The aesthetic of interior Boncafe Pregolan restaurant is interesting to be analyzed, because of the interior's plays inside. The design principles implemented t...

  2. Rapid Determination of Protein Solubility and Stability Conditions for NMR Studies Using Incomplete Factorial Design

    International Nuclear Information System (INIS)

    Ducat, Thierry; Declerck, Nathalie; Gostan, Thierry; Kochoyan, Michel; Demene, Helene

    2006-01-01

    Sample preparation constitutes a crucial and limiting step in structural studies of proteins by NMR. The determination of the solubility and stability (SAS) conditions of biomolecules at millimolar concentrations stays today empirical and hence time- and material-consuming. Only few studies have been recently done in this field and they have highlighted the interest of using crystallogenesis tools to optimise sample conditions. In this study, we have adapted a method based on incomplete factorial design and making use of crystallisation plates to quantify the influence of physico-chemical parameters such as buffer pH and salts on protein SAS. A description of the experimental set up and an evaluation of the method are given by case studies on two functional domains from the bacterial regulatory protein LicT as well as two other proteins. Using this method, we could rapidly determine optimised conditions for extracting soluble proteins from bacterial cells and for preparing purified protein samples sufficiently concentrated and stable for NMR characterisation. The drastic reduction in the time and number of experiments required for searching protein SAS conditions makes this method particularly well-adapted for a systematic investigation on a large range of physico-chemical parameters

  3. Development of a Novel Green Fluorescent Protein-Based Binding Assay to Study the Association of Plakins with Intermediate Filament Proteins.

    Science.gov (United States)

    Favre, Bertrand; Begré, Nadja; Bouameur, Jamal-Eddine; Borradori, Luca

    2016-01-01

    Protein-protein interactions are fundamental for most biological processes, such as the formation of cellular structures and enzymatic complexes or in signaling pathways. The identification and characterization of protein-protein interactions are therefore essential for understanding the mechanisms and regulation of biological systems. The organization and dynamics of the cytoskeleton, as well as its anchorage to specific sites in the plasma membrane and organelles, are regulated by the plakins. These structurally related proteins anchor different cytoskeletal networks to each other and/or to other cellular structures. The association of several plakins with intermediate filaments (IFs) is critical for maintenance of the cytoarchitecture. Pathogenic mutations in the genes encoding different plakins can lead to dramatic manifestations, occurring principally in the skin, striated muscle, and/or nervous system, due to cytoskeletal disorganization resulting in abnormal cell fragility. Nevertheless, it is still unclear how plakins bind to IFs, although some general rules are slowly emerging. We here describe in detail a recently developed protein-protein fluorescence binding assay, based on the production of recombinant proteins tagged with green fluorescent protein (GFP) and their use as fluid-phase fluorescent ligands on immobilized IF proteins. Using this method, we have been able to assess the ability of C-terminal regions of GFP-tagged plakin proteins to bind to distinct IF proteins and IF domains. This simple and sensitive technique, which is expected to facilitate further studies in this area, can also be potentially employed for any kind of protein-protein interaction studies. © 2016 Elsevier Inc. All rights reserved.

  4. A two-hybrid assay to study protein interactions within the secretory pathway.

    Directory of Open Access Journals (Sweden)

    Danielle H Dube

    Full Text Available Interactions of transcriptional activators are difficult to study using transcription-based two-hybrid assays due to potent activation resulting in false positives. Here we report the development of the Golgi two-hybrid (G2H, a method that interrogates protein interactions within the Golgi, where transcriptional activators can be assayed with negligible background. The G2H relies on cell surface glycosylation to report extracellularly on protein-protein interactions occurring within the secretory pathway. In the G2H, protein pairs are fused to modular domains of the reporter glycosyltransferase, Och1p, and proper cell wall formation due to Och1p activity is observed only when a pair of proteins interacts. Cells containing interacting protein pairs are identified by selectable phenotypes associated with Och1p activity and proper cell wall formation: cells that have interacting proteins grow under selective conditions and display weak wheat germ agglutinin (WGA binding by flow cytometry, whereas cells that lack interacting proteins display stunted growth and strong WGA binding. Using this assay, we detected the interaction between transcription factor MyoD and its binding partner Id2. Interfering mutations along the MyoD:Id2 interaction interface ablated signal in the G2H assay. Furthermore, we used the G2H to detect interactions of the activation domain of Gal4p with a variety of binding partners. Finally, selective conditions were used to enrich for cells encoding interacting partners. The G2H detects protein-protein interactions that cannot be identified via traditional two-hybrid methods and should be broadly useful for probing previously inaccessible subsets of the interactome, including transcriptional activators and proteins that traffic through the secretory pathway.

  5. Preliminary study on plasma proteins in pregnant and non-pregnant female dogs.

    Science.gov (United States)

    Szczubiał, Marek; Wawrzykowski, Jacek; Dąbrowski, Roman; Krawczyk, Magdalena; Kankofer, Marta

    2017-07-15

    In this study, we used a combined approach based on 2-dimensional electrophoresis (2-DE), difference in gel electrophoresis (DIGE), and mass spectrometry (MS) to identify the plasma protein composition in pregnant female dogs and compared it with non-pregnant female dogs. We used the plasma samples obtained from four female dogs during I, II, and III thirds of pregnancy, three days after parturition, as well as from four non-pregnant female dogs in diestrus phase. Analysis of 2-DE gel image exhibited of 249 protein spots. The intensity of staining of 35 spots differed significantly (P dogs. We used matrix-assisted laser desorption/ionization-time of flight-mass spectrometry (MALDI TOF MS) to identify 47 spots corresponding to 52 different proteins. Five identified protein spots, including zinc finger BED domain-containing protein 5, hemoglobin subunit beta-2, integrator complex subunit 7, apolipoprotein A-I, and glutamyl aminopeptidase were differentially presented in the plasma of pregnant and non-pregnant female dogs. To the best of our knowledge, this is the first report on the plasma protein profile of pregnant and non-pregnant female dogs. In this study, we identified proteins that have not been previously identified in dogs. Our findings showed that numerous protein spots were differentially presented in the plasma of female dogs during normal pregnancy. Although we identified only a limited number of differentially presented proteins, our study demonstrated that the plasma protein profile changed during pregnancy in female dogs, which suggests its importance in maintaining pregnancy. Further studies are necessary to define complete plasma protein profile of pregnant female dogs and to identify all proteins that are differentially presented in the pregnant animals compared with the non-pregnant ones. In addition, studies are warranted to explain the role of those proteins in maintaining the pregnancy and their usefulness in detection of early pregnancy

  6. An electrophoretic study of the soluble lens proteins from the Indian mackerel, Rastrelliger kanagurta (Cuv)

    Digital Repository Service at National Institute of Oceanography (India)

    Menezes, M.R.

    Soluble eye lens nuclei proteins of the Indian mackerel Rastrelliger kanagurta were studied by cellogel electrophoresis, to see whether there are any intra species variations. A distinct pattern characterised by the number of bands, mobility...

  7. Construction of improved tools for protein localization studies in Streptococcus pneumoniae.

    Directory of Open Access Journals (Sweden)

    Mafalda X Henriques

    Full Text Available We have constructed a set of plasmids that allow efficient expression of both N- and C-terminal fusions of proteins of interest to fluorescent proteins mCherry, Citrine, CFP and GFP in the Gram-positive pathogen Streptococcus pneumoniae. In order to improve expression of the fluorescent fusions to levels that allow their detection by fluorescence microscopy, we have introduced a 10 amino acid tag, named i-tag, at the N-terminal end of the fluorescent proteins. This caused increased expression due to improved translation efficiency and did not interfere with the protein localization in pneumococcal bacteria. Localizing fluorescent derivatives of FtsZ, Wzd and Wze in dividing bacteria validated the developed tools. The availability of the new plasmids described in this work should greatly facilitate studies of protein localization in an important clinical pathogen.

  8. Study Quality Protein and Fat in Some Romanian and Foreign Soybean Varieties

    Directory of Open Access Journals (Sweden)

    Daniela Cenan (Pasc

    2014-11-01

    Full Text Available Worldwide soy is one of the most important sources of vegetable protein and vegetable fats supplying plant. Soybean proteins are important both for human food and animal feed industry concentrated. In the last twenty years soybeans have become an irreplaceable product for the food industry. This paper presents the results of the production capacity, protein and oil content of 25 soybean genotypes studied in 2011-2013 at Agricultural Research Station Turda Development. Were calculated  the amounts of protein and oil produced by each genotype in part each year and averaged over three experimental years. Protein content was between 39 per cent and 43.9 per cent and for fat percentage values ​​were between 18.9 per cent and 21.8 per cent. Romanian genotypes quality results are similar to those obtained for foreign genotypes. These genotypes can be grown in climatic conditions of Transylvania resulting quality for there production.

  9. Study of the hydration of globular proteins by broad NMR lines method

    Energy Technology Data Exchange (ETDEWEB)

    Blicharska, B [Uniwersytet Jagiellonski, Krakow (Poland). Instytut Fizyki

    1973-01-01

    Spectra of proteins and polypeptides obtained by means of a NMR broad line spectrometer consist of broad and thin lines. These broad and thin lines are attributed to proteins and to water absorbed on the surfaces of proteins respectively. The behaviour of the thin line in the spectra of lyophilizated albumin of the egg white has been studied in the temperature range from -42 to 20/sup 0/C. The amount of water has been found by the simple method of weighing and has been equal about 7% of the total weight. It has been found that the water absorbed on the surface of the lyophilizated proteins gives a thinner line in comparison to the water absorbed on molecules of proteins in water solutions and that the correlation time is about 10/sup 3/ times greater.

  10. Purification, identification and preliminary crystallographic studies of a 2S albumin seed protein from Lens culinaris

    International Nuclear Information System (INIS)

    Gupta, Pankaj; Gaur, Vineet; Salunke, Dinakar M.

    2008-01-01

    A 2S albumin from L. culinaris was purified and crystallized and preliminary crystallographic studies were carried out. Lens culinaris (lentil) is a widely consumed high-protein-content leguminous crop. A 2S albumin protein (26.5 kDa) has been identified using NH 2 -terminal sequencing from a 90% ammonium sulfate saturation fraction of total L. culinaris seed protein extract. The NH 2 -terminal sequence shows very high homology to PA2, an allergy-related protein from Pisum sativum. The 2S albumin protein was purified using a combination of size-exclusion and ion-exchange chromatography. Crystals of the 2S seed albumin obtained using the hanging-drop vapour-diffusion method diffracted to 2.5 Å resolution and were indexed in space group P4 1 (or P4 3 ), with unit-cell parameters a = b = 78.6, c = 135.2 Å

  11. Formation of Oxides in the Interior of Friction Stir Welds

    Science.gov (United States)

    Schneider, Judy; Chen, Po; Nunes, Arthur C., Jr.

    2016-01-01

    In friction stir welding (FSWing) the actual solid state joining takes place between the faying surfaces which form the weld seam. Thus the seam trace is often investigated for clues when the strength of the weld is reduced. Aluminum and its alloys are known to form a native, protective oxide on the surface. If these native surface oxides are not sufficiently broken up during the FSW process, they are reported to remain in the FSW interior and weaken the bond strength. This type of weld defect has been referred to as a lazy "S", lazy "Z", joint line defect, kissing bond, or residual oxide defect. Usually these defects are mitigated by modification of the process parameters, such as increased tool rotation rate, which causes a finer breakup of the native oxide particles. This study proposes that there may be an alternative mechanism for formation of oxides found within the weld nugget. As the oxidation rate increases at elevated temperatures above 400ºC, it may be possible for enhanced oxidation to occur on the interior surfaces during the FSW process from entrained air entering the seam gap. Normally, FSWs of aluminum alloys are made without a purge gas and it is unknown how process parameters and initial fit up could affect a potential air path into the interior during the processing. In addition, variations in FSW parameters, such as the tool rotation, are known to have a strong influence on the FSW temperature which may affect the oxidation rate if internal surfaces are exposed to entrained air. A series of FSWs were made in 3 different thickness panels of AA2219 (0.95, 1.27 and 1.56 cm) at 2 different weld pitches. As the thickness of the panels increased, there was an increased tendency for a gap to form in advance of the weld tool. If sufficient air is able to enter the workpiece gap prior to consolidation, the weld temperature can increase the oxidation rate on the interior surfaces. These oxidation rates would also be accelerated in areas of localized

  12. Shotgun proteomic analytical approach for studying proteins adsorbed onto liposome surface

    KAUST Repository

    Capriotti, Anna Laura

    2011-07-02

    The knowledge about the interaction between plasma proteins and nanocarriers employed for in vivo delivery is fundamental to understand their biodistribution. Protein adsorption onto nanoparticle surface (protein corona) is strongly affected by vector surface characteristics. In general, the primary interaction is thought to be electrostatic, thus surface charge of carrier is supposed to play a central role in protein adsorption. Because protein corona composition can be critical in modifying the interactive surface that is recognized by cells, characterizing its formation onto lipid particles may serve as a fundamental predictive model for the in vivo efficiency of a lipidic vector. In the present work, protein coronas adsorbed onto three differently charged cationic liposome formulations were compared by a shotgun proteomic approach based on nano-liquid chromatography-high-resolution mass spectrometry. About 130 proteins were identified in each corona, with only small differences between the different cationic liposome formulations. However, this study could be useful for the future controlled design of colloidal drug carriers and possibly in the controlled creation of biocompatible surfaces of other devices that come into contact with proteins into body fluids. © 2011 Springer-Verlag.

  13. A dynamic study of protein secretion and aggregation in the secretory pathway.

    Science.gov (United States)

    Mossuto, Maria Francesca; Sannino, Sara; Mazza, Davide; Fagioli, Claudio; Vitale, Milena; Yoboue, Edgar Djaha; Sitia, Roberto; Anelli, Tiziana

    2014-01-01

    Precise coordination of protein biogenesis, traffic and homeostasis within the early secretory compartment (ESC) is key for cell physiology. As a consequence, disturbances in these processes underlie many genetic and chronic diseases. Dynamic imaging methods are needed to follow the fate of cargo proteins and their interactions with resident enzymes and folding assistants. Here we applied the Halotag labelling system to study the behavior of proteins with different fates and roles in ESC: a chaperone, an ERAD substrate and an aggregation-prone molecule. Exploiting the Halo property of binding covalently ligands labelled with different fluorochromes, we developed and performed non-radioactive pulse and chase assays to follow sequential waves of proteins in ESC, discriminating between young and old molecules at the single cell level. In this way, we could monitor secretion and degradation of ER proteins in living cells. We can also follow the biogenesis, growth, accumulation and movements of protein aggregates in the ESC. Our data show that protein deposits within ESC grow by sequential apposition of molecules up to a given size, after which novel seeds are detected. The possibility of using ligands with distinct optical and physical properties offers a novel possibility to dynamically follow the fate of proteins in the ESC.

  14. A dynamic study of protein secretion and aggregation in the secretory pathway.

    Directory of Open Access Journals (Sweden)

    Maria Francesca Mossuto

    Full Text Available Precise coordination of protein biogenesis, traffic and homeostasis within the early secretory compartment (ESC is key for cell physiology. As a consequence, disturbances in these processes underlie many genetic and chronic diseases. Dynamic imaging methods are needed to follow the fate of cargo proteins and their interactions with resident enzymes and folding assistants. Here we applied the Halotag labelling system to study the behavior of proteins with different fates and roles in ESC: a chaperone, an ERAD substrate and an aggregation-prone molecule. Exploiting the Halo property of binding covalently ligands labelled with different fluorochromes, we developed and performed non-radioactive pulse and chase assays to follow sequential waves of proteins in ESC, discriminating between young and old molecules at the single cell level. In this way, we could monitor secretion and degradation of ER proteins in living cells. We can also follow the biogenesis, growth, accumulation and movements of protein aggregates in the ESC. Our data show that protein deposits within ESC grow by sequential apposition of molecules up to a given size, after which novel seeds are detected. The possibility of using ligands with distinct optical and physical properties offers a novel possibility to dynamically follow the fate of proteins in the ESC.

  15. Strategic study on energy-protein requirements for local sheep: 5. Ewes during lactation phase

    Directory of Open Access Journals (Sweden)

    I-W Mathius

    2004-03-01

    Full Text Available Thirty-six Javanese thin-tail ewes in the end of late pregnancy phase were set out to study the energy and crude protein requirements during the first eight-week of lactation phase. The ewes were penned individually in doors and randomly assigned to a 3 x 3 factorial arrangement, consisting of three levels of energy (low, medium and high and three levels of crude protein (low, medium and high diets with four ewes per treatment. The diets were pelleted and offered four times daily in approximately equal amount. Feed intake, nutrient digestibility, body weight and milk production were recorded. Results showed that, total lamb birth weights was not affected, but protein content on the ration treatments significantly altered (P0.05, while crude protein content on the ration highly significantly affected (P<0.01. Based on data recorded, the energy and protein requirements for ewes during lactation phase are highly significantly depended on ewes’ live weight, milk production and the ratio of energy metabolism and crude protein of the ration. It was concluded that in order to fulfil the crude protein and energy needs of the ewes during lactation phase, the ration given should contain crude protein and energy as much as 16% (based on dry matter and 13.4 MJ/kg dry matter respectively.

  16. Disorder Prediction Methods, Their Applicability to Different Protein Targets and Their Usefulness for Guiding Experimental Studies

    Directory of Open Access Journals (Sweden)

    Jennifer D. Atkins

    2015-08-01

    Full Text Available The role and function of a given protein is dependent on its structure. In recent years, however, numerous studies have highlighted the importance of unstructured, or disordered regions in governing a protein’s function. Disordered proteins have been found to play important roles in pivotal cellular functions, such as DNA binding and signalling cascades. Studying proteins with extended disordered regions is often problematic as they can be challenging to express, purify and crystallise. This means that interpretable experimental data on protein disorder is hard to generate. As a result, predictive computational tools have been developed with the aim of predicting the level and location of disorder within a protein. Currently, over 60 prediction servers exist, utilizing different methods for classifying disorder and different training sets. Here we review several good performing, publicly available prediction methods, comparing their application and discussing how disorder prediction servers can be used to aid the experimental solution of protein structure. The use of disorder prediction methods allows us to adopt a more targeted approach to experimental studies by accurately identifying the boundaries of ordered protein domains so that they may be investigated separately, thereby increasing the likelihood of their successful experimental solution.

  17. System Cost Analysis for an Interior Permanent Magnet Motor

    Energy Technology Data Exchange (ETDEWEB)

    Peter Campbell

    2008-08-01

    The objective of this program is to provide an assessment of the cost structure for an interior permanent magnet ('IPM') motor which is designed to meet the 2010 FreedomCAR specification. The program is to evaluate the range of viable permanent magnet materials for an IPM motor, including sintered and bonded grades of rare earth magnets. The study considers the benefits of key processing steps, alternative magnet shapes and their assembly methods into the rotor (including magnetization), and any mechanical stress or temperature limits. The motor's costs are estimated for an annual production quantity of 200,000 units, and are broken out into such major components as magnetic raw materials, processing and manufacturing. But this is essentially a feasibility study of the motor's electromagnetic design, and is not intended to include mechanical or thermal studies as would be done to work up a selected design for production.

  18. Deep Interior Mission: Imaging the Interior of Near-Earth Asteroids Using Radio Reflection Tomography

    Science.gov (United States)

    Safaeinili, A.; Asphaug, E.; Belton, M.; Klaasen, K.; Ostro, S.; Plaut, J.; Yeomans, D.

    2004-12-01

    Near-Earth asteroids are important exploration targets since they provide clues to the evolution of the solar system. They are also of interest since they present a clear danger to Earth in the future. Our mission objective is to image the internal structure of two NEOs using radio reflection tomography (RRT), in order to explore the record of asteroid origin and impact evolution, and to test the fundamental hypothesis that these important members of the solar system are rubble piles rather than consolidated bodies. Our mission's RRT technique is analogous to doing a ``CAT scan" of the asteroid from orbit. Closely sampled radar echoes are processed to yield volumetric maps of mechanical and compositional boundaries, and measure interior material dielectric properties. The RRT instrument is a radar that operates at 5 and 15 MHz with two 30-m (tip-to-tip) dipole antennas that are used in a cross-dipole configuration. The radar transmitter and receiver electronics have heritage from JPL's MARSIS contribution to Mars Express, and the antenna is similar to systems used in IMAGE and LACE missions. The 5-MHz channel is designed to penetrate >1 km of basaltic rock, and 15-MHz penetrates a few hundred meters or more. In addition to RRT volumetric imaging, we use a redundant color cameras to explore the surface expressions of unit boundaries, in order to relate interior radar imaging to what is observable from spacecraft imaging and from Earth. The camera also yields stereo color imaging for geology and RRT-related compositional analysis. Gravity and high fidelity geodesy are used to explore how interior structure is expressed in shape, density, mass distribution and spin. Deep interior has two targets (S-type 1999 ND43 and V-type Nyx ) whose composition bracket the diversity of solar system materials that we are likely to encounter, and are richly complementary.

  19. Using Single-Protein Tracking to Study Cell Migration.

    Science.gov (United States)

    Orré, Thomas; Mehidi, Amine; Massou, Sophie; Rossier, Olivier; Giannone, Grégory

    2018-01-01

    To get a complete understanding of cell migration, it is critical to study its orchestration at the molecular level. Since the recent developments in single-molecule imaging, it is now possible to study molecular phenomena at the single-molecule level inside living cells. In this chapter, we describe how such approaches have been and can be used to decipher molecular mechanisms involved in cell migration.

  20. Adamantane-based amphiphiles (ADAs) for membrane protein study: importance of a detergent hydrophobic group in membrane protein solubilisation.

    Science.gov (United States)

    Chae, Pil Seok; Bae, Hyoung Eun; Das, Manabendra

    2014-10-21

    We prepared adamantane-containing amphiphiles and evaluated them using a large membrane protein complex in terms of protein solubilisation and stabilization efficacy. These agents were superior to conventional detergents, especially in terms of the membrane protein solubilisation efficiency, implying a new detergent structure-property relationship.

  1. Optimal Power Flow by Interior Point and Non Interior Point Modern Optimization Algorithms

    Directory of Open Access Journals (Sweden)

    Marcin Połomski

    2013-03-01

    Full Text Available The idea of optimal power flow (OPF is to determine the optimal settings for control variables while respecting various constraints, and in general it is related to power system operational and planning optimization problems. A vast number of optimization methods have been applied to solve the OPF problem, but their performance is highly dependent on the size of a power system being optimized. The development of the OPF recently has tracked significant progress both in numerical optimization techniques and computer techniques application. In recent years, application of interior point methods to solve OPF problem has been paid great attention. This is due to the fact that IP methods are among the fastest algorithms, well suited to solve large-scale nonlinear optimization problems. This paper presents the primal-dual interior point method based optimal power flow algorithm and new variant of the non interior point method algorithm with application to optimal power flow problem. Described algorithms were implemented in custom software. The experiments show the usefulness of computational software and implemented algorithms for solving the optimal power flow problem, including the system model sizes comparable to the size of the National Power System.

  2. Experimental Study on Improvement of Interior Sound Quality of Cars by Using Music Control Method%音乐控制法改善车内声品质的试验研究

    Institute of Scientific and Technical Information of China (English)

    李芳; 左言言; 李玉东

    2014-01-01

    以4种类型汽车内采集到的32个不同噪声样本为评价对象,通过试验研究建立了以心理声学客观参数描述主观评价结果的车内声品质模型,并对声品质较差的噪声样本实施了音乐掩蔽控制试验,试验结果表明,车内噪声的低沉度下降,音调度上升。研究结果表明音乐掩蔽控制法用于改善汽车声品质的可行性和有效性。%Taking 32 car’s interior noise samples acquired from 4 types of vehicles under different conditions as evaluation objects, a sound quality model is built to describe the subjective evaluation by using the objective psycho-acoustical parameters. The music masking control experiments for poor noise sample are performed. The results show that the low-and-deep noise inside the cars is reduced, but the tonality is raised. The music masking control is proved to be feasible and effective in the vehicle sound quality improvement.

  3. Designscholar: Examining Creative Thinking in an Online Learning Community for Interior Design Graduate Students

    Science.gov (United States)

    Ransdell, Marlo Evelyn

    2009-01-01

    This study examined the creative thinking of interior design graduate students in an online learning community. This study considered potential changes in creative thinking (fluency, flexibility, originality, and elaboration) about design research resulting from peer-led online discussions. It further studied the learner characteristics of…

  4. Protein extraction method for the proteomic study of a Mexican traditional fermented starchy food.

    Science.gov (United States)

    Cárdenas, C; Barkla, B J; Wacher, C; Delgado-Olivares, L; Rodríguez-Sanoja, R

    2014-12-05

    Pozol is a traditional fermented maize dough prepared in southeastern Mexico. Wide varieties of microorganisms have already been isolated from this spontaneously fermented product; and include fungi, yeasts, and lactic- and non-lactic acid bacteria. Pozol presents physicochemical features different from that of other food fermentation products, such as a high starch content, in addition to a low protein content. It is these qualities that make it intractable for protein recovery and characterization. The aim of this study was to develop a methodology to optimize the recovery of proteins from the pozol dough following fermentation, by reducing the complexity of the mixture prior to 2D-PAGE analysis and sequencing, to allow the characterization of the metaproteome of the dough. The proteome of 15day fermented maize dough was characterized; proteins were separated and analyzed by mass spectrometry (LC-MS/MS). Subsequent sequence homology database searching, identified numerous bacterial and fungi proteins; with a predominance of lactic acid bacterial proteins, mainly from the Lactobacillus genus. Fungi are mainly represented by Aspergillus. For dominant genera, the most prevalent proteins belong to carbohydrate metabolism and energy production, which suggest that at 15days of fermentation not only fungi but also bacteria are metabolically active. Several methodologies have been employed to study pozol, with a specific focus toward the identification of the microbiota of this fermented maize dough, using both traditional cultivation techniques and culture independent molecular techniques. However to date, the dynamics of this complex fermentation is not well understood. With the purpose to gain further insight into the nature of the fermentation, we used proteomic technologies to identify the origin of proteins and enzymes that facilitate substrate utilization and ultimately the development of the microbiota and fermentation. In this paper we overcome the first general

  5. Deep Interior: Probing the Structure of Primitive Bodies

    Science.gov (United States)

    Asphaug, Erik; Scheeres, Daniel; Safaeinili, Ali

    probe the mechanical behavior of an asteroid we conclude each rendezvous by observing one or more explosion cratering experiments. Cratering (CRT). Cratering is the primary mode of geologic evolution of asteroids, and meteoroid impacts can trigger outbursts on cometary nuclei. The process is important to study for its own sake, and a cratering experiment offers three additional science benefits: (1) final crater diameter and morphology indicates the mechanical behavior of regolith and other exterior materials; (2) cratering exposes the subsurface for analysis of interior materials; and (3) cratering might trigger global reverberations that can be detected using before-and-after image comparisons of toppled boulders and landslides. Small cratering events may be of global consequence on small asteroids (Asphaug, MAPS, in press) and thus a grenade of only a few kg is likely to send a detectable resurfacing reverberation spanning the asteroid. This experiment thus serves as a low cost proxy for primitive body seismology. Global seismic response is quantified using techniques that have been developed on Earth based on estimates for the dynamical acceleration of preciariously balanced rocks (Brune et al., JGR 2003). Ideally the mission would have two cratering charges per rendezvous target, differing by ˜2 orders of magnitude in yield, to bracket local to global response. Cratering and landslide physics will also be studied in this novel microgravity setting, for the purpose of establishing scaling rules and addressing fundamental problems of dense granular flow. Moreover, many cubic meters of ejected regolith are exposed for analysis of size distribution, clast shape, spectral heterogeneity, and dynamics. In the case that the asteroid is metastable (e.g. a rapid rotator), the small cratering event might trigger a global avalanche, in which case Deep Interior will observe the formation of transitory debris disks or small moons (e.g. Scheeres et al., Science 2007). Hazards to

  6. Urine protein electrophoresis study in dogs with pituitary dependent hyperadrenocorticism during therapy with trilostane

    Directory of Open Access Journals (Sweden)

    Douglas S. Caragelasco

    Full Text Available ABSTRACT: Hyperadrenocorticism is one of the most common endocrine disorders in dogs. Regarding to the kidneys, chronic hypercortisolemia can cause damage to the glomerulus, and evolve into chronic kidney disease. This study evaluated nine normotensive dogs with pituitary dependent hyperadrenocorticism, before and after therapy with trilostane, during the follow-up period of six months, in order to investigate the development of pathological proteinuria by quantitative (urinary protein-to-creatinine ratio and qualitative (urinary protein electrophoresis methods, and also to monitor its intensity over the course of the disease and therapy. The main renal lesion detected in dogs with hyperadrenocorticism was in the tubular segment, evidenced by the prevalence of urinary protein bands of lower molecular weight, indicating the lack absorption of these proteins in the proximal segment of the nephron. Low molecular weight proteins persisted throughout the follow-up. Regarding the future of routine veterinary medical clinic in the care of patients with hyperadrenocorticism, the assessments of proteinuria determinations by the urinary protein-to-creatinin ratio and urinary protein electrophoresis, according to the results obtained in this study, can add more information about the renal damage in these animals, and contribute to the prognosis.

  7. Biocompatibility study of protein capped and uncapped silver nanoparticles on human hemoglobin

    Science.gov (United States)

    Bhunia, Amit Kumar; Kanti Samanta, Pijus; Aich, Debasish; Saha, Satyajit; Kamilya, Tapanendu

    2015-06-01

    The interactions of human hemoglobin with protein capped silver nanoparticles and bare silver nanoparticles were studied to understand fundamental perspectives about the biocompatibility of protein capped silver nanoparticles compared with bare silver nanoparticles. Bare silver (Ag) nanoparticles (NPs) were prepared by the chemical reduction method. High resolution transmission electron microscopy (HRTEM) analysis along with absorption at ~390 nm indicated the formation of bare Ag NPs. Protein coated Ag NPs were prepared by a green synthesis method. Absorption at ~440 nm along with ~280 nm indicated the formation of protein coated Ag NPs. The biocompatibility of the above mentioned Ag NPs was studied by interaction with human hemoglobin (Hb) protein. In presence of bare Ag NPs, the Soret band of Hb was red shifted. This revealed the distortion of iron from the heme pockets of Hb. Also, the fluorescence peak of Hb was quenched and red shifted which indicated that Hb became unfolded in the presence of bare Ag NPs. No red shift of the absorption of Soret, along with no shift and quenching of the fluorescence peak of Hb were observed in the presence of protein coated Ag NPs. A hemolysis assay suggested that protein coated Ag NPs were more biocompatible than bare one.

  8. Structural studies of bacterial transcriptional regulatory proteins by multidimensional heteronuclear NMR

    Energy Technology Data Exchange (ETDEWEB)

    Volkman, Brian Finley [Univ. of California, Berkeley, CA (United States)

    1995-02-01

    Nuclear magnetic resonance spectroscopy was used to elucidate detailed structural information for peptide and protein molecules. A small peptide was designed and synthesized, and its three-dimensional structure was calculated using distance information derived from two-dimensional NMR measurements. The peptide was used to induce antibodies in mice, and the cross-reactivity of the antibodies with a related protein was analyzed with enzyme-linked immunosorbent assays. Two proteins which are involved in regulation of transcription in bacteria were also studied. The ferric uptake regulation (Fur) protein is a metal-dependent repressor which controls iron uptake in bacteria. Two- and three-dimensional NMR techniques, coupled with uniform and selective isotope labeling allowed the nearly complete assignment of the resonances of the metal-binding domain of the Fur protein. NTRC is a transcriptional enhancer binding protein whose N-terminal domain is a "receiver domain" in the family of "two-component" regulatory systems. Phosphorylation of the N-terminal domain of NTRC activates the initiation of transcription of aeries encoding proteins involved in nitrogen regulation. Three- and four-dimensional NMR spectroscopy methods have been used to complete the resonance assignments and determine the solution structure of the N-terminal receiver domain of the NTRC protein. Comparison of the solution structure of the NTRC receiver domain with the crystal structures of the homologous protein CheY reveals a very similar fold, with the only significant difference being the position of helix 4 relative to the rest of the protein. The determination of the structure of the NTRC receiver domain is the first step toward understanding a mechanism of signal transduction which is common to many bacterial regulatory systems.

  9. Spatial memory extinction: a c-Fos protein mapping study.

    Science.gov (United States)

    Méndez-Couz, M; Conejo, N M; Vallejo, G; Arias, J L

    2014-03-01

    While the neuronal basis of spatial memory consolidation has been thoroughly studied, the substrates mediating the process of extinction remain largely unknown. This study aimed to evaluate the functional contribution of selected brain regions during the extinction of a previously acquired spatial memory task in the Morris water maze. For that purpose, we used adult male Wistar rats trained in a spatial reference memory task. Learning-related changes in c-Fos inmunoreactive cells after training were evaluated in cortical and subcortical regions. Results show that removal of the hidden platform in the water maze induced extinction of the previously reinforced escape behavior after 16 trials, without spontaneous recovery 24h later. Extinction was related with significantly higher numbers of c-Fos positive nuclei in amygdala nuclei and prefrontal cortex. On the other hand, the lateral mammillary bodies showed higher number of c-Fos positive cells than the control group. Therefore, in contrast with the results obtained in studies of classical conditioning, we show the involvement of diencephalic structures mediating this kind of learning. In summary, our findings suggest that medial prefrontal cortex, the amygdala complex and diencephalic structures like the lateral mammillary nuclei are relevant for the extinction of spatial memory. Copyright © 2013 Elsevier B.V. All rights reserved.

  10. Acute-phase proteins in pregnant goats: a longitudinal study.

    Science.gov (United States)

    Czopowicz, Michał; Szaluś-Jordanow, Olga; Mickiewicz, Marcin; Witkowski, Lucjan; Markowska-Daniel, Iwona; Stefaniak, Tadeusz; Reczyńska, Daria; Bagnicka, Emilia; Kaba, Jarosław

    2017-11-01

    We documented changes in serum amyloid A (SAA) and haptoglobin (Hp) concentration in goats during pregnancy, as measured by competitive ELISAs. Fifteen does (pregnant group) and 20 castrated males (control group) were enrolled in the study. Blood samples were collected on the same day from all 35 goats, 7 times throughout the study period: at mating, then once every month, during the week preceding kidding, and 1 mo after kidding. Baseline SAA and Hp concentrations at mating were identical in the 2 groups. In the pregnant group, SAA concentration rose significantly in the second month and remained elevated until the end of pregnancy, with the peak concentration at kidding. In the control group, SAA concentration remained unchanged compared to the baseline concentration throughout the study. SAA concentration was significantly higher in the pregnant than control group only at the end of the fourth month of pregnancy and at kidding. Hp concentration did not change during pregnancy or between groups. SAA concentration at kidding was affected only by parity of does - it was highest in does in the third and fourth pregnancy and gradually lower in older does.

  11. Study on the interaction between active components from traditional Chinese medicine and plasma proteins.

    Science.gov (United States)

    Jiao, Qishu; Wang, Rufeng; Jiang, Yanyan; Liu, Bin

    2018-05-04

    Traditional Chinese medicine (TCM), as a unique form of natural medicine, has been used in Chinese traditional therapeutic systems over two thousand years. Active components in Chinese herbal medicine are the material basis for the prevention and treatment of diseases. Research on drug-protein binding is one of the important contents in the study of early stage clinical pharmacokinetics of drugs. Plasma protein binding study has far-reaching influence on the pharmacokinetics and pharmacodynamics of drugs and helps to understand the basic rule of drug effects. It is important to study the binding characteristics of the active components in Chinese herbal medicine with plasma proteins for the medical science and modernization of TCM. This review summarizes the common analytical methods which are used to study the active herbal components-protein binding and gives the examples to illustrate their application. Rules and influence factors of the binding between different types of active herbal components and plasma proteins are summarized in the end. Finally, a suggestion on choosing the suitable technique for different types of active herbal components is provided, and the prospect of the drug-protein binding used in the area of TCM research is also discussed.

  12. Single-particle electron microscopy in the study of membrane protein structure.

    Science.gov (United States)

    De Zorzi, Rita; Mi, Wei; Liao, Maofu; Walz, Thomas

    2016-02-01

    Single-particle electron microscopy (EM) provides the great advantage that protein structure can be studied without the need to grow crystals. However, due to technical limitations, this approach played only a minor role in the study of membrane protein structure. This situation has recently changed dramatically with the introduction of direct electron detection device cameras, which allow images of unprecedented quality to be recorded, also making software algorithms, such as three-dimensional classification and structure refinement, much more powerful. The enhanced potential of single-particle EM was impressively demonstrated by delivering the first long-sought atomic model of a member of the biomedically important transient receptor potential channel family. Structures of several more membrane proteins followed in short order. This review recounts the history of single-particle EM in the study of membrane proteins, describes the technical advances that now allow this approach to generate atomic models of membrane proteins and provides a brief overview of some of the membrane protein structures that have been studied by single-particle EM to date. © The Author 2015. Published by Oxford University Press on behalf of The Japanese Society of Microscopy. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  13. Salivary Cytoprotective Proteins in Inflammation and Resolution during Experimental Gingivitis—A Pilot Study

    Science.gov (United States)

    Aboodi, Guy M.; Sima, Corneliu; Moffa, Eduardo B.; Crosara, Karla T. B.; Xiao, Yizhi; Siqueira, Walter L.; Glogauer, Michael

    2016-01-01

    Objective: The protective mechanisms that maintain periodontal homeostasis in gingivitis and prevent periodontal tissue destruction are poorly understood. The aim of this study was to identify changes in the salivary proteome during experimental gingivitis. Study design: We used oral neutrophil quantification and whole saliva (WS) proteomics to assess changes that occur in the inflammatory and resolution phases of gingivitis in healthy individuals. Oral neutrophils and WS samples were collected and clinical parameters measured on days 0, 7, 14, 21, 28, and 35. Results: Increased oral neutrophil recruitment and salivary cytoprotective proteins increased progressively during inflammation and decreased in resolution. Oral neutrophil numbers in gingival inflammation and resolution correlated moderately with salivary β-globin, thioredoxin, and albumin and strongly with collagen alpha-1 and G-protein coupled receptor 98. Conclusions: Our results indicate that changes in salivary cytoprotective proteins in gingivitis are associated with a similar trend in oral neutrophil recruitment and clinical parameters. Clinical relevance: We found moderate to strong correlations between oral neutrophil numbers and levels of several salivary cytoprotective proteins both in the development of the inflammation and in the resolution of gingivitis. Our proteomics approach identified and relatively quantified specific cytoprotective proteins in this pilot study of experimental gingivitis; however, future and more comprehensive studies are needed to clearly identify and validate those protein biomarkers when gingivitis is active. PMID:26779447

  14. Developing Nanodiscs as a Tool for Low Resolution Studies of Membrane Proteins

    DEFF Research Database (Denmark)

    Skar-Gislinge, Nicholas

    studies of membrane proteins. So far most of the studies using nanodiscs have been concerning the function of the incorporated membrane protein. However, due to the good control of the size and lipid composition of the nanodisc system, they seem an ideal tool for expanding the use of small angle......Phospholipid nanodiscs are ⇠ 10 nm disc shaped particles consisting of about 150 phospholipids arranged in a central bilayer stabilized by two amphipathic protein ”belts” that wrap around the rim of the bilayer. Because they contain a small bilayer leaflet they can be used as a tool for solution......-assembly process in general, and in particular in relation to incorporation of membrane proteins. This was the aim of work done early in this thesis. Here a detailed model for the small angle x-ray and neutron scattering from the empty nanodisc system was derived and used to describe the nanodisc system with great...

  15. [A study of recombinant human sestrin 1 and sestrin 2 proteins produced in a prokaryotic system].

    Science.gov (United States)

    Rai, N; Kumar, R; Haque, Md A; Hassan, Md I; Dey, S

    2017-01-01

    Sestrins are highly conserved stress-inducible proteins capable of suppressing the production of ROS and signalling through mTORC1. Here we report a study of human sestrin1 (sesn1) and sestrin2 (sesn2) proteins produced in a pET28^(+) vector based prokaryotic system. Mass spectrometry analysis, western blot and surface plasmon resonance (SPR) of affinity purified sesn1 and sesn2 proteins confirmed their identity; biophysical characteristics were observed using circular dichroism (CD) showing that sesn1 and sesn2 have a predominant α-helical structure. Here we describe a simple, one step purification process to purify a large amount of sestrin proteins with significant yield. Further study of recombinant human sestrins may further facilitate the understanding of their roles in eukaryotic cells.

  16. Nitrogen balance study in young Nigerian adult males using four levels of protein intake.

    Science.gov (United States)

    Atinmo, T; Mbofung, C M; Egun, G; Osotimehin, B

    1988-11-01

    1. The present study was carried out to estimate precisely, via the nitrogen balance technique, the protein requirement of Nigerians (earlier estimated via the obligatory N method) using graded levels of protein intake. 2. Fifteen medical students of the University of Ibadan who volunteered to participate in the study were given graded levels of protein (0.3, 0.45, 0.6 and 0.75 g/kg body-weight per d) derived from foods similar to those usually consumed by the subjects. 3. Each subject was given each of the dietary protein levels for a period of 10 d. Subjects were divided into two groups and the feeding pattern followed a criss-cross design with one group starting with the highest level of protein intake (0.3 g). Mean energy intake during each of the eleven experimental periods was maintained at 0.2 MJ/kg per d. After an initial 5 d adaptation period in each experimental period, 24 h urine and faecal samples were collected in marked containers for five consecutive days for N determination. 4. Mean N balance during consumption of the four protein levels (0.30, 0.45, 0.6 and 0.75 g/kg) were -11.02 (SD 8.07), -9.90 (SD 6.64), +9.70 (SD 4.15) and +5.13 (SD 4.62) respectively. Using regression analysis, the mean daily N requirement was estimated at 110.25 mg N/kg body-weight (0.69 g protein/kg body-weight). Estimates of allowances for individual variations to cover 97.5% of the population adjusted this value to 0.75 g protein/kg body-weight. Net protein utilization for the diet at maintenance level was estimated at 57.5.

  17. Titan's interior from Cassini-Huygens

    Science.gov (United States)

    Tobie, G.; Baland, R.-M.; Lefevre, A.; Monteux, J.; Cadek, O.; Choblet, G.; Mitri, G.

    2013-09-01

    The Cassini-Huygens mission has brought many informations about Titan that can be used to infer its interior structure: the gravity field coefficients (up to degree 3, [1]), the surface shape (up to degree 6, [2]), the tidal Love number [1], the electric field [3], and the orientation of its rotation axis [4]. The measured obliquity and gravity perturbation due to tides, as well as the electric field, are lines of evidence for the presence of an internal global ocean beneath the ice surface of Titan [5,1,3]. The observed surface shape and gravity can be used to further constrain the structure of the ice shell above the internal ocean. The presence of a significant topography associated with weak gravity anomalies indicates that deflections of internal interface or lateral density variations may exist to compensate the topography. To assess the sources of compensation, we consider interior models including interface deflections and/or density variations, which reproduces simultaneously the surface gravity and long-wavelength topography data [6]. Furthermore, in order to test the long-term mechanical stability of the internal mass anomalies, we compute the relaxation rate of each internal interface in response to surface mass load. We show that the topography can be explained either by defections of the ocean/ice interface or by density variations in an upper crust [6]. For non-perfectly compensated models of the outer ice shell, the present-day structure is stable only for a conductive layer above a relatively cold ocean (for bottom viscosity > 1016 Pa.s, T residual gravity anomalies. The existence of mass anomalies in the rocky core is a most likely explanation. However, as the observed geoid and topography are mostly sensitive to the lateral structure of the outer ice shell, no information can be retrieved on the ice shell thickness, ocean density and/or size of the rocky core. Constraints on these internal parameters can be obtained from the tidal Love number and

  18. Borehole locations on seven interior salt domes

    International Nuclear Information System (INIS)

    Simcox, A.C.; Wampler, S.L.

    1982-08-01

    This report is designed as an inventory of all wells known to have been drilled within a five-mile radius of each of seven salt domes within the Interior Salt Basin in east Texas, northern Louisiana and Mississippi. There are 72 boreholes that entered salt above an elevation of -3000 feet mean sea level. For these, details of location, drilling dates, depth of casing and cement, elevation of top of caprock and salt, etc., are given on tables in the appendix. Of the seven domes, Oakwood has the largest number of boreholes, thirty-eight (including two sidetracked wells) that enter the salt stock above -3000 feet mean sea level; another dome in northeast Texas, Keechi, has eight; in northern Louisiana, Rayburn's has four and Vacherie has five; in southern Mississippi, Cypress Creek has seven, Lampton has one, and Richton has nine. In addition, all wells known outside the supra-domal area, but within a five-mile radius of the center of the 7 domes are separately catalogued

  19. 10. The surface and interior of venus

    Science.gov (United States)

    Masursky, H.; Kaula, W.M.; McGill, G.E.; Pettengill, G.H.; Phillips, R.J.; Russell, C.T.; Schubert, G.; Shapiro, I.I.

    1977-01-01

    Present ideas about the surface and interior of Venus are based on data obtained from (1) Earth-based radio and radar: temperature, rotation, shape, and topography; (2) fly-by and orbiting spacecraft: gravity and magnetic fields; and (3) landers: winds, local structure, gamma radiation. Surface features, including large basins, crater-like depressions, and a linear valley, have been recognized from recent ground-based radar images. Pictures of the surface acquired by the USSR's Venera 9 and 10 show abundant boulders and apparent wind erosion. On the Pioneer Venus 1978 Orbiter mission, the radar mapper experiment will determine surface heights, dielectric constant values and small-scale slope values along the sub-orbital track between 50??S and 75??N. This experiment will also estimate the global shape and provide coarse radar images (40-80 km identification resolution) of part of the surface. Gravity data will be obtained by radio tracking. Maps combining radar altimetry with spacecraft and ground-based images will be made. A fluxgate magnetometer will measure the magnetic fields around Venus. The radar and gravity data will provide clues to the level of crustal differentiation and tectonic activity. The magnetometer will determine the field variations accurately. Data from the combined experiments may constrain the dynamo mechanism; if so, a deeper understanding of both Venus and Earth will be gained. ?? 1977 D. Reidel Publishing Company.

  20. Magnetism and the interior of the moon

    Science.gov (United States)

    Dyal, P.; Parkin, C. W.; Daily, W. D.

    1974-01-01

    During the time period 1961-1972, 11 magnetometers were sent to the moon. The primary purpose of this paper is to review the results of lunar magnetometer data analysis, with emphasis on the lunar interior. Magnetic fields have been measured on the lunar surface at the Apollo 12, 14, 15, and 16 landing sites. The remanent field values at these sites are 38, 103 (maximum), 3, and 327 gammas (maximum), respectively. Simultaneous magnetic field and solar plasma pressure measurements show that the Apollo 12 and 16 remanent fields are compressed during times of high plasma dynamic pressure. Apollo 15 and 16 subsatellite magnetometers have mapped in detail the field above portions of the lunar surface and have placed an upper limit on the global permanent dipole moment. Satellite and surface measurements show strong evidence that the lunar crust is magnetized over much of the lunar globe. Magnetic fields are stronger in highland regions than in mare regions and stronger on the lunar far side than on the near side. The largest magnetic anomaly measured to date is between the craters Van de Graaff and Aitken on the lunar far side.

  1. Identification of stress responsive genes by studying specific relationships between mRNA and protein abundance

    Directory of Open Access Journals (Sweden)

    Shimpei Morimoto

    2018-03-01

    Full Text Available Protein expression is regulated by the production and degradation of mRNAs and proteins but the specifics of their relationship are controversial. Although technological advances have enabled genome-wide and time-series surveys of mRNA and protein abundance, recent studies have shown paradoxical results, with most statistical analyses being limited to linear correlation, or analysis of variance applied separately to mRNA and protein datasets. Here, using recently analyzed genome-wide time-series data, we have developed a statistical analysis framework for identifying which types of genes or biological gene groups have significant correlation between mRNA and protein abundance after accounting for potential time delays. Our framework stratifies all genes in terms of the extent of time delay, conducts gene clustering in each stratum, and performs a non-parametric statistical test of the correlation between mRNA and protein abundance in a gene cluster. Consequently, we revealed stronger correlations than previously reported between mRNA and protein abundance in two metabolic pathways. Moreover, we identified a pair of stress responsive genes (ADC17 and KIN1 that showed a highly similar time series of mRNA and protein abundance. Furthermore, we confirmed robustness of the analysis framework by applying it to another genome-wide time-series data and identifying a cytoskeleton-related gene cluster (keratin 18, keratin 17, and mitotic spindle positioning that shows similar correlation. The significant correlation and highly similar changes of mRNA and protein abundance suggests a concerted role of these genes in cellular stress response, which we consider provides an answer to the question of the specific relationships between mRNA and protein in a cell. In addition, our framework for studying the relationship between mRNAs and proteins in a cell will provide a basis for studying specific relationships between mRNA and protein abundance after

  2. Field Dependence and Vocational Choice of Interior Design Students.

    Science.gov (United States)

    Davis, Diane M.; And Others

    One hundred ninety-three interior design college students were administered the Group Embedded Figures Test, a measure of field dependence, in order to evaluate two of Witkin's hypotheses regarding career choice. The career-differentiation hypothesis predicted that students electing to major in interior design would be field independent because…

  3. Virtual Interior Design Based On VRML AND JAVA

    Science.gov (United States)

    Qi, Shaoliang

    Virtual reality has been involved in a wide range of academic and commercial applications. It can give users a natural feeling of the environment by creating realistic virtual worlds. In this paper, we use vrml and java to discuss the virtual interior design. EAI and JASI are used to realize the interaction between user and virtual interior scene.

  4. Mood perception of interior colors in a gym

    Science.gov (United States)

    Ohno, Haruyo; Koizumi, Naoko

    2002-06-01

    When people enter a gym, they feel more like exercising in some cases than other cases. The interior color of the space may be a contributing factor. This paper discusses how the interior color of a gym affects female subjects in their twenties and forties to fifties both physiologically and psychologically.

  5. The Interior Columbia Basin Ecosystem Management Project: scientific assessment.

    Science.gov (United States)

    1999-01-01

    This CD-ROM contains digital versions (PDF) of the major scientific documents prepared for the Interior Columbia Basin Ecosystem Management Project (ICBEMP). "A Framework for Ecosystem Management in the Interior Columbia Basin and Portions of the Klamath and Great Basins" describes a general planning model for ecosystem management. The "Highlighted...

  6. Design for subjective well-being in interior architecture

    NARCIS (Netherlands)

    Petermans, A.; Pohlmeyer, A.E.

    2014-01-01

    Can interior environments engage people in pleasurable and meaningful experiences and thereby have a positive influence on their happiness? This paper discusses why and how interior architects might want to consider implementing ideas in relation to ‘design for subjective well-being’. Despite of

  7. Interior spatial layout with soft objectives using evolutionary computation

    NARCIS (Netherlands)

    Chatzikonstantinou, I.; Bengisu, E.

    2016-01-01

    This paper presents the design problem of furniture arrangement in a residential interior living space, and addresses it by means of evolutionary computation. Interior arrangement is an important and interesting problem that occurs commonly when designing living spaces. It entails determining the

  8. Interior Design Education within a Human Ecological Framework

    Science.gov (United States)

    Kaup, Migette L.; Anderson, Barbara G.; Honey, Peggy

    2007-01-01

    An education based in human ecology can greatly benefit interior designers as they work to understand and improve the human condition. Design programs housed in colleges focusing on human ecology can improve the interior design profession by taking advantage of their home base and emphasizing the human ecological framework in the design curricula.…

  9. DESIGN INFORMATION REPORT: PROTECTION OF WASTEWATER LAGOON INTERIOR SLOPES

    Science.gov (United States)

    A problem common to many wastewater treatment and storage lagoons is erosion of the interior slopes. Erosion may be caused by surface runoff and wind-induced wave action. The soils that compose the steep interior slopes of lagoons are especially susceptible to erosion and slumpin...

  10. Knotworking In An Interior Décor Process

    DEFF Research Database (Denmark)

    Rasmussen, Mai; Jensen, Rasmus Lund; Fisker, Anna Marie

    2016-01-01

    These days, new buildings are being built at Aalborg University in Denmark, why interior décor processes are initiated. Planning the interior décor of Aalborg University is centralized at the Shared Service Center, where internal architects furnish the spaces and buy the selected furniture withou...

  11. Interior-Point Methods for Linear Programming: A Review

    Science.gov (United States)

    Singh, J. N.; Singh, D.

    2002-01-01

    The paper reviews some recent advances in interior-point methods for linear programming and indicates directions in which future progress can be made. Most of the interior-point methods belong to any of three categories: affine-scaling methods, potential reduction methods and central path methods. These methods are discussed together with…

  12. Resilience of Athabascan subsistence systems to interior Alaska's changing climate

    Science.gov (United States)

    Gary P. Kofinas; F. Stuart Chapin; Shauna BurnSilver; Jennifer I. Schmidt; Nancy L. Fresco; Knut Kielland; Stephanie Martin; Anna Springsteen; T. Scott Rupp

    2010-01-01

    Subsistence harvesting and wild food production by Athabascan peoples is part of an integrated social-ecological system of interior Alaska. We describe effects of recent trends and future climate change projections on the boreal ecosystem of interior Alaska and relate changes in ecosystem services to Athabascan subsistence. We focus primarily on moose, a keystone...

  13. A study on the potential of insect protein and lipid as a food source

    NARCIS (Netherlands)

    Yi, L.

    2015-01-01

    Propositions

    Propositions belonging to the thesis, entitled:‘A study on the potential of insect protein and lipid as a food source’. Liya Yi

    Wageningen, 9 February 2015.High protein

  14. Optimisation of anomalous scattering and structural studies of proteins using synchrotron radiation

    International Nuclear Information System (INIS)

    Helliwell, J.R.

    1979-01-01

    Measurements from crystalline protein samples using SR can be conveniently divided into two classes. Firstly, small samples, large unit cells, the rapid collection of accurate high resolution data and dynamical studies can all benefit from the high intensity. Secondly, an important extension of the classical methods of protein structure determination arises from use of the tunability of SR for optimization of anomalous scattering and subsequent phase determination. This paper concentrates on this area of application. (author)

  15. Screening and large-scale expression of membrane proteins in mammalian cells for structural studies

    OpenAIRE

    Goehring, April; Lee, Chia-Hsueh; Wang, Kevin H.; Michel, Jennifer Carlisle; Claxton, Derek P.; Baconguis, Isabelle; Althoff, Thorsten; Fischer, Suzanne; Garcia, K. Christopher; Gouaux, Eric

    2014-01-01

    Structural, biochemical and biophysical studies of eukaryotic membrane proteins are often hampered by difficulties in over-expression of the candidate molecule. Baculovirus transduction of mammalian cells (BacMam), although a powerful method to heterologously express membrane proteins, can be cumbersome for screening and expression of multiple constructs. We therefore developed plasmid Eric Gouaux (pEG) BacMam, a vector optimized for use in screening assays, as well as for efficient productio...

  16. Solid state nuclear magnetic resonance studies of prion peptides and proteins

    Energy Technology Data Exchange (ETDEWEB)

    Heller, Jonathan [Univ. of California, Berkeley, CA (United States)

    1997-08-01

    High-resolution structural studies using x-ray diffraction and solution nuclear magnetic resonance (NMR) are not feasible for proteins of low volubility and high tendency to aggregate. Solid state NMR (SSNMR) is in principle capable of providing structural information in such systems, however to do this efficiently and accurately, further SSNMR tools must be developed This dissertation describes the development of three new methods and their application to a biological system of interest, the priori protein (PrP).

  17. Reticulomics: Protein-Protein Interaction Studies with Two Plasmodesmata-Localized Reticulon Family Proteins Identify Binding Partners Enriched at Plasmodesmata, Endoplasmic Reticulum, and the Plasma Membrane.

    Science.gov (United States)

    Kriechbaumer, Verena; Botchway, Stanley W; Slade, Susan E; Knox, Kirsten; Frigerio, Lorenzo; Oparka, Karl; Hawes, Chris

    2015-11-01

    The endoplasmic reticulum (ER) is a ubiquitous organelle that plays roles in secretory protein production, folding, quality control, and lipid biosynthesis. The cortical ER in plants is pleomorphic and structured as a tubular network capable of morphing into flat cisternae, mainly at three-way junctions, and back to tubules. Plant reticulon family proteins (RTNLB) tubulate the ER by dimerization and oligomerization, creating localized ER membrane tensions that result in membrane curvature. Some RTNLB ER-shaping proteins are present in the plasmodesmata (PD) proteome and may contribute to the formation of the desmotubule, the axial ER-derived structure that traverses primary PD. Here, we investigate the binding partners of two PD-resident reticulon proteins, RTNLB3 and RTNLB6, that are located in primary PD at cytokinesis in tobacco (Nicotiana tabacum). Coimmunoprecipitation of green fluorescent protein-tagged RTNLB3 and RTNLB6 followed by mass spectrometry detected a high percentage of known PD-localized proteins as well as plasma membrane proteins with putative membrane-anchoring roles. Förster resonance energy transfer by fluorescence lifetime imaging microscopy assays revealed a highly significant interaction of the detected PD proteins with the bait RTNLB proteins. Our data suggest that RTNLB proteins, in addition to a role in ER modeling, may play important roles in linking the cortical ER to the plasma membrane. © 2015 American Society of Plant Biologists. All Rights Reserved.

  18. A Class of Rigid Linker-bearing Glucosides for Membrane Protein Structural Study.

    Science.gov (United States)

    Sadaf, Aiman; Mortensen, Jonas S; Capaldi, Stefano; Tikhonova, Elena; Hariharan, Parameswaran; de Castro Ribeiro, Orquidea; Loland, Claus J; Guan, Lan; Byrne, Bernadette; Chae, Pil Seok

    2016-03-01

    Membrane proteins are amphipathic bio-macromolecules incompatible with the polar environments of aqueous media. Conventional detergents encapsulate the hydrophobic surfaces of membrane proteins allowing them to exist in aqueous solution. Membrane proteins stabilized by detergent micelles are used for structural and functional analysis. Despite the availability of a large number of detergents, only a few agents are sufficiently effective at maintaining the integrity of membrane proteins to allow successful crystallization. In the present study, we describe a novel class of synthetic amphiphiles with a branched tail group and a triglucoside head group. These head and tail groups were connected via an amide or ether linkage by using a tris(hydroxylmethyl)aminomethane (TRIS) or neopentyl glycol (NPG) linker to produce TRIS-derived triglucosides (TDTs) and NPG-derived triglucosides (NDTs), respectively. Members of this class conferred enhanced stability on target membrane proteins compared to conventional detergents. Because of straightforward synthesis of the novel agents and their favourable effects on a range of membrane proteins, these agents should be of wide applicability to membrane protein science.

  19. High Protein Intake Improves Insulin Sensitivity but Exacerbates Bone Resorption in Immobility (WISE Study)

    Science.gov (United States)

    Heer, Martina; Smith, Scott M.; Frings-Meuthen, Petra; Zwart, Sara R.; Baecker, Natalie

    2012-01-01

    Inactivity, like bed rest (BR), causes insulin resistance (IR) and bone loss even in healthy subjects. High protein intake seems to mitigate this IR but might exacerbate bone loss. We hypothesized that high protein intake (animal:vegetable protein ratio: 60:40), isocaloric, compared to the control group plus high potassium intake would prevent IR without affecting bone turnover. After a 20-day ambulatory adaptation to controlled confinement and diet, 16 women participated in a 60-day, 6 deg head-down-tilt BR and were assigned randomly to one of the two groups. Control subjects (CON, n=8) received 1g/kg body mass/d dietary protein. Nutrition subjects (NUT, n=8) received 1.45g/kg body mass/d dietary protein plus 7.2g branched chain amino acids per day during BR. All subjects received 1670 kcal/d. Bed rest decreased glucose disposal by 35% (pprotein intake prevented insulin resistance, but exacerbated bed rest induced increase in bone resorption markers C-telopeptide (> 30%) and Ntelopeptide (>20%) (both: pprotein intake. We conclude from these results that high protein intake might positively affect glucose tolerance, but might also foster bone loss. Further long-duration studies are mandatory before high protein intake for diabetic patients, who have an increased fracture risk, might be recommended.

  20. Thermodynamic investigations of protein's behaviour with ionic liquids in aqueous medium studied by isothermal titration calorimetry.

    Science.gov (United States)

    Bharmoria, Pankaj; Kumar, Arvind

    2016-05-01

    While a number of reports appear on ionic liquids-proteins interactions, their thermodynamic behaviour using suitable technique like isothermal titration calorimetry is not systematically presented. Isothermal titration calorimetry (ITC) is a key technique which can directly measure the thermodynamic contribution of IL binding to protein, particularly the enthalpy, heat capacities and binding stoichiometry. Ionic liquids (ILs), owing to their unique and tunable physicochemical properties have been the central area of scientific research besides graphene in the last decade, and growing unabated. Their encounter with proteins in the biological system is inevitable considering their environmental discharge though most of them are recyclable for a number of cycles. In this article we will cover the thermodynamics of proteins upon interaction with ILs as osmolyte and surfactant. The up to date literature survey of IL-protein interactions using isothermal titration calorimetry will be discussed and parallel comparison with the results obtained for such studies with other techniques will be highlighted to demonstrate the accuracy of ITC technique. Net stability of proteins can be obtained from the difference in the free energy (ΔG) of the native (folded) and denatured (unfolded) state using the Gibbs-Helmholtz equation (ΔG=ΔH-TΔS). Isothermal titration calorimetry can directly measure the heat changes upon IL-protein interactions. Calculation of other thermodynamic parameters such as entropy, binding constant and free energy depends upon the proper fitting of the binding isotherms using various fitting models. Copyright © 2015 Elsevier B.V. All rights reserved.