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Sample records for interior studying proteins

  1. Studies in Interior Design

    Science.gov (United States)

    Environ Planning Design, 1970

    1970-01-01

    Floor plans and photographs illustrate a description of the Samuel C. Williams Library at Stevens Institute of Technology, Hoboken, N.J. The unusual interior design allows students to take full advantage of the library's resources. (JW)

  2. INTERIORITY - a prefab case study

    DEFF Research Database (Denmark)

    Hvejsel, Marie Frier

    and furnishing articulation hereof. In the second volume of the thesis; ‘INTERIORITY: a prefab case study’ this theory of interiority has been endeavored applied in a specific prefab project concerning the development of a novel prefab building system and housing series in collaboration with the Danish prefab......, tectonically. Hence, it has been a particular idea of the study to explore the relation between furniture, the spatial envelope itself, and its construct by using furniture as an architectural concept. Consequently, the thesis has specifically investigated whether this notion of interiority, describing...

  3. Fractal symmetry of protein interior: what have we learned?

    Science.gov (United States)

    Banerji, Anirban; Ghosh, Indira

    2011-08-01

    The application of fractal dimension-based constructs to probe the protein interior dates back to the development of the concept of fractal dimension itself. Numerous approaches have been tried and tested over a course of (almost) 30 years with the aim of elucidating the various facets of symmetry of self-similarity prevalent in the protein interior. In the last 5 years especially, there has been a startling upsurge of research that innovatively stretches the limits of fractal-based studies to present an array of unexpected results on the biophysical properties of protein interior. In this article, we introduce readers to the fundamentals of fractals, reviewing the commonality (and the lack of it) between these approaches before exploring the patterns in the results that they produced. Clustering the approaches in major schools of protein self-similarity studies, we describe the evolution of fractal dimension-based methodologies. The genealogy of approaches (and results) presented here portrays a clear picture of the contemporary state of fractal-based studies in the context of the protein interior. To underline the utility of fractal dimension-based measures further, we have performed a correlation dimension analysis on all of the available non-redundant protein structures, both at the level of an individual protein and at the level of structural domains. In this investigation, we were able to separately quantify the self-similar symmetries in spatial correlation patterns amongst peptide-dipole units, charged amino acids, residues with the π-electron cloud and hydrophobic amino acids. The results revealed that electrostatic environments in the interiors of proteins belonging to 'α/α toroid' (all-α class) and 'PLP-dependent transferase-like' domains (α/β class) are highly conducive. In contrast, the interiors of 'zinc finger design' ('designed proteins') and 'knottins' ('small proteins') were identified as folds with the least conducive electrostatic

  4. Statistical interior properties of globular proteins

    International Nuclear Information System (INIS)

    Zhou-Ting, Jiang; Tai-Quan, Wu; Lin-Xi, Zhang; Ting-Ting, Sun

    2009-01-01

    The character of forming long-range contacts affects the three-dimensional structure of globular proteins deeply. As the different ability to form long-range contacts between 20 types of amino acids and 4 categories of globular proteins, the statistical properties are thoroughly discussed in this paper. Two parameters N C and N D are defined to confine the valid residues in detail. The relationship between hydrophobicity scales and valid residue percentage of each amino acid is given in the present work and the linear functions are shown in our statistical results. It is concluded that the hydrophobicity scale defined by chemical derivatives of the amino acids and nonpolar phase of large unilamellar vesicle membranes is the most effective technique to characterise the hydrophobic behavior of amino acid residues. Meanwhile, residue percentage P i and sequential residue length L i of a certain protein i are calculated under different conditions. The statistical results show that the average value of P i as well as L i of all-α proteins has a minimum among these 4 classes of globular proteins, indicating that all-α proteins are hardly capable of forming long-range contacts one by one along their linear amino acid sequences. All-β proteins have a higher tendency to construct long-range contacts along their primary sequences related to the secondary configurations, i.e. parallel and anti-parallel configurations of β sheets. The investigation of the interior properties of globular proteins give us the connection between the three-dimensional structure and its primary sequence data or secondary configurations, and help us to understand the structure of protein and its folding process well. (cross-disciplinary physics and related areas of science and technology)

  5. INTERIORITY

    DEFF Research Database (Denmark)

    Hvejsel, Marie Frier

    Dealing with the general theme of domestic architectural quality, the PhD thesis ‘INTERIORITY’ takes its point of departure in the continuous and increasing need to improve our capability as architects to theoretically articulate the intangible concept of quality, and to reveal it through an active...... been motivated by the particular hypothesis that an introduction of the notion of interiority, as an ability of the spatial envelope itself to address the sensuous scale of furniture, unfolds a particular dual critical potential signifying our experience of domestic architectural quality: On the one......, tectonically. Hence, it has been a particular idea of the study to explore the relation between furniture, the spatial envelope itself, and its construct by using furniture as an architectural concept. Consequently, the thesis has specifically investigated whether this notion of interiority, describing...

  6. Interior Design Supports Art Education: A Case Study

    Science.gov (United States)

    Clemons, Stephanie A.

    2006-01-01

    Interior design, as a field of study, is a rapidly growing area of interest--particularly for teenagers in the United States. Part of this interest stems from the proliferation of design-related reality shows available through television media. Some art educators and curriculum specialists in the nation perceive the study of interior spaces as a…

  7. Geothermal studies of seven interior salt domes

    International Nuclear Information System (INIS)

    1983-06-01

    This report defines and compares the geothermal environments of eight selected Gulf Coast salt domes. The thermal regimes in and around Gulf Coast salt domes are not well documented. The data base used for this study is an accumulation of bottom-hole temperature readings from oil and gas exploration wells and temperature logs run for the National Waste Terminal Storage (NWTS) program. The bottom-hole tempreatures were corrected in order to estimate the actual geothermal environments. Prior thermal studies and models indicate temperatures in and around salt domes are elevated above the norm by 1 0 F to 25 0 F. Using existing geothermal data and accepted theory, geothermal gradients for the selected domes and surrounding sediments were estimated. This study concludes that salt domes within a given basin have similar geothermal gradients, but that the basins differ in average geothermal gradients. This relationship is probably controlled by deep basement structural trends. No evidence of residual heat of emplacement was found associated with any of the selected domes

  8. Service-Learning and Interior Design: A Case Study

    Science.gov (United States)

    Sterling, Mary

    2007-01-01

    The case study approach was used to analyze experiential learning through its three components: knowledge, action, and reflection. Two interior design courses were integrated through a university service-learning project. The restoration/adaptive reuse of a 95-year-old library building was to serve as a prototype for future off-campus…

  9. Planning Bepicolombo MPO Science Operations to study Mercury Interior

    Science.gov (United States)

    De La Fuente, Sara; Carasa, Angela; Ortiz, Iñaki; Rodriguez, Pedro; Casale, Mauro; Benkhoff, Johannes; Zender, Joe

    2017-04-01

    BepiColombo is an Interdisciplinary Cornerstone ESA-JAXA Mission to Mercury, with two orbiters, the ESA Mercury Planetary Orbiter (MPO) and the JAXA Mercury Magnetospheric Orbiter (MMO) dedicated to study of the planet and its magnetosphere. The MPO, is a three-axis-stabilized, nadir-pointing spacecraft which will be placed in a polar orbit, providing excellent spatial resolution over the entire planet surface. The MPO's scientific payload comprises 11 instrument packages, including laser altimeter, cameras and the radio science experiment that will be dedicated to the study of Mercury's interior: structure, composition, formation and evolution. The planning of the science operations to be carried out by the Mercury's interior scientific instruments will be done by the SGS located at the European Space Astronomy Centre (ESAC), in conjunction with the scientific instrument teams. The process will always consider the complete nominal mission duration, such that the contribution of the scheduled science operations to the science objectives, the total data volume generated, and the seasonal interdependency, can be tracked. The heart of the science operations planning process is the Observations Catalogue (OC), a web-accessed database to collect and analyse all science operations requests. From the OC, the SGS will first determine all science opportunity windows compatible with the spacecraft operational constraints. Secondly, only those compatible with the resources (power and data volume) and pointing constraints will be chosen, including slew feasibility.

  10. Experimental Study of Interior Temperature Distribution Inside Parked Automobile Cabin

    Directory of Open Access Journals (Sweden)

    Issam Mohammed Ali Aljubury

    2015-03-01

    Full Text Available Temperature inside the vehicle cabin is very important to provide comfortable conditions to the car passengers. Temperature inside the cabin will be increased, when the car is left or parked directly under the sunlight. Experimental studies were performed in Baghdad, Iraq (33.3 oN, 44.4 oE to investigate the effects of solar radiation on car cabin components (dashboard, steering wheel, seat, and inside air. The test vehicle was oriented to face south to ensure maximum (thermal sun load on the front windscreen. Six different parking conditions were investigated. A suggested car cover was examined experimentally. The measurements were recorded for clear sky summer days started at 8 A.M. till 5 P.M. Results show that interior air temperature in unshaded parked car reaches 70oC and dashboard temperature can approach 100 oC. While, cardboard car shade inside the car not reduce the air temperature inside it. Suggested car cover with 1 cm part-down side windows reduced temperature of cabin components by 70 % in average compare to the base case.

  11. Cellular proteins associated with the interior and exterior of vesicular stomatitis virus virions.

    Directory of Open Access Journals (Sweden)

    Megan Moerdyk-Schauwecker

    Full Text Available Virus particles (virions often contain not only virus-encoded but also host-encoded proteins. Some of these host proteins are enclosed within the virion structure, while others, in the case of enveloped viruses, are embedded in the host-derived membrane. While many of these host protein incorporations are likely accidental, some may play a role in virus infectivity, replication and/or immunoreactivity in the next host. Host protein incorporations may be especially important in therapeutic applications where large numbers of virus particles are administered. Vesicular stomatitis virus (VSV is the prototypic rhabdovirus and a candidate vaccine, gene therapy and oncolytic vector. Using mass spectrometry, we previously examined cell type dependent host protein content of VSV virions using intact ("whole" virions purified from three cell lines originating from different species. Here we aimed to determine the localization of host proteins within the VSV virions by analyzing: i whole VSV virions; and ii whole VSV virions treated with Proteinase K to remove all proteins outside the viral envelope. A total of 257 proteins were identified, with 181 identified in whole virions and 183 identified in Proteinase K treated virions. Most of these proteins have not been previously shown to be associated with VSV. Functional enrichment analysis indicated the most overrepresented categories were proteins associated with vesicles, vesicle-mediated transport and protein localization. Using western blotting, the presence of several host proteins, including some not previously shown in association with VSV (such as Yes1, Prl1 and Ddx3y, was confirmed and their relative quantities in various virion fractions determined. Our study provides a valuable inventory of virion-associated host proteins for further investigation of their roles in the replication cycle, pathogenesis and immunoreactivity of VSV.

  12. Small aperture seismic arrays for studying planetary interiors and seismicity

    Science.gov (United States)

    Schmerr, N. C.; Lekic, V.; Fouch, M. J.; Panning, M. P.; Siegler, M.; Weber, R. C.

    2017-12-01

    Seismic arrays are a powerful tool for understanding the interior structure and seismicity across objects in the Solar System. Given the operational constraints of ground-based lander investigations, a small aperture seismic array can provide many of the benefits of a larger-scale network, but does not necessitate a global deployment of instrumentation. Here we define a small aperture array as a deployment of multiple seismometers, with a separation between instruments of 1-1000 meters. For example, small aperture seismic arrays have been deployed on the Moon during the Apollo program, the Active Seismic Experiments of Apollo 14 and 16, and the Lunar Seismic Profiling Experiment deployed by the Apollo 17 astronauts. Both were high frequency geophone arrays with spacing of 50 meters that provided information on the layering and velocity structure of the uppermost kilometer of the lunar crust. Ideally such arrays would consist of instruments that are 3-axis short period or broadband seismometers. The instruments must have a sampling rate and frequency range sensitivity capable of distinguishing between waves arriving at each station in the array. Both terrestrial analogs and the data retrieved from the Apollo arrays demonstrate the efficacy of this approach. Future opportunities exist for deployment of seismic arrays on Europa, asteroids, and other objects throughout the Solar System. Here we will present both observational data and 3-D synthetic modeling results that reveal the sensing requirements and the primary advantages of a small aperture seismic array over single station approach. For example, at the smallest apertures of < 1 m, we constrain that sampling rates must exceed 500 Hz and instrument sensitivity must extend to 100 Hz or greater. Such advantages include the improved ability to resolve the location of the sources near the array through detection of backazimuth and differential timing between stations, determination of the small-scale structure

  13. Study of thermal stability and degradation of fire resistant candidate polymers for aircraft interiors

    Science.gov (United States)

    Hsu, M. T. S.

    1976-01-01

    The thermochemistry of bismaleimide resins and phenolphthalein polycarbonate was studied. Both materials are fire-resistant polymers and may be suitable for aircraft interiors. The chemical composition of the polymers has been determined by nuclear magnetic resonance and infrared spectroscopy and by elemental analysis. Thermal properties of these polymers have been characterized by thermogravimetric analyses. Qualitative evaluation of the volatile products formed in pyrolysis under oxidative and non-oxidative conditions has been made using infrared spectrometry. The residues after pyrolysis were analyzed by elemental analysis. The thermal stability of composite panel and thermoplastic materials for aircraft interiors was studied by thermogravimetric analyses.

  14. Inside Job: Methods for Delivering Proteins to the Interior of Mammalian Cells.

    Science.gov (United States)

    Bruce, Virginia J; McNaughton, Brian R

    2017-08-17

    Currently, 7 of the top 10 selling drugs are biologics, and all of them are proteins. Their large size, structural complexity, and molecular diversity often results in surfaces capable of potent and selective recognition of receptors that challenge, or evade, traditional small molecules. However, most proteins do not penetrate the lipid bilayer exterior of mammalian cells. This severe limitation dramatically limits the number of disease-relevant receptors that proteins can target and modulate. Given the major role proteins play in modern medicine, and the magnitude of this limitation, it is unsurprising that an enormous amount of effort has been dedicated to overcoming this pesky impediment. In this article, we summarize and evaluate current approaches for intracellular delivery of exogenous proteins to mammalian cells and, in doing so, aim to illuminate fertile ground for future discovery in this critical area of research. Copyright © 2017. Published by Elsevier Ltd.

  15. Computational Studies of Protein Hydration Methods

    Science.gov (United States)

    Morozenko, Aleksandr

    It is widely appreciated that water plays a vital role in proteins' functions. The long-range proton transfer inside proteins is usually carried out by the Grotthuss mechanism and requires a chain of hydrogen bonds that is composed of internal water molecules and amino acid residues of the protein. In other cases, water molecules can facilitate the enzymes catalytic reactions by becoming a temporary proton donor/acceptor. Yet a reliable way of predicting water protein interior is still not available to the biophysics community. This thesis presents computational studies that have been performed to gain insights into the problems of fast and accurate prediction of potential water sites inside internal cavities of protein. Specifically, we focus on the task of attainment of correspondence between results obtained from computational experiments and experimental data available from X-ray structures. An overview of existing methods of predicting water molecules in the interior of a protein along with a discussion of the trustworthiness of these predictions is a second major subject of this thesis. A description of differences of water molecules in various media, particularly, gas, liquid and protein interior, and theoretical aspects of designing an adequate model of water for the protein environment are widely discussed in chapters 3 and 4. In chapter 5, we discuss recently developed methods of placement of water molecules into internal cavities of a protein. We propose a new methodology based on the principle of docking water molecules to a protein body which allows to achieve a higher degree of matching experimental data reported in protein crystal structures than other techniques available in the world of biophysical software. The new methodology is tested on a set of high-resolution crystal structures of oligopeptide-binding protein (OppA) containing a large number of resolved internal water molecules and applied to bovine heart cytochrome c oxidase in the fully

  16. Mechanism, kinetics and application studies on enhanced activated sludge by interior microelectrolysis.

    Science.gov (United States)

    Yang, Xiaoyi; Xue, Yu; Wang, Wenna

    2009-01-01

    Enhanced activated sludge by interior microelectrolysis (EAIM) was studied to treat textile wastewater, kinetics, mechanism and application of which were also discussed in comparison with traditional activated sludge and interior microelectrolysis, respectively. The results of kinetics study indicated three different processes all followed first-order kinetics well. In EAIM, three impact factors take effects on COD removal, which are flocculation, activated sludge and electrophoresis and redox. In terms of assumption of no interaction among three COD removal mechanisms, 49.6% of the total COD removal is ascribed to flocculation, 30.1% to activated sludge and 20.3% to electrophoresis and redox. EAIM showed its advantages in COD removal efficiency, extensive adaptability to complex composition and wide range of pH. EAIM-aerobic process provided an efficient and economic performance for dealing with textile wastewater.

  17. The Net-Generation Interior Design Student: An Exploratory Study Assessing Learning and Engagement within a Computer Simulation Environment

    Science.gov (United States)

    Peterson, Julie Ellen

    2009-01-01

    The first purpose of this experimental study was to determine if there were effects on achievement between traditional pencil-and-paper instructional strategies and computer simulated instructional strategies used to teach interior design business ethics. The second purpose was to determine the level of engagement of interior design students using…

  18. Planetary Magnetic Fields: Planetary Interiors and Habitability W. M. Keck Institute for Space Studies Report

    Science.gov (United States)

    Lazio, T. Joseph; Shkolnik, Evgenya; Hallinan, Gregg

    2017-05-01

    The W. M. Keck Institute for Space Studies (KISS) sponsored the "Planetary Magnetic Fields: Planetary Interiors and Habitability" study to review the state of knowledge of extrasolar planetary magnetic fields and the prospects for their detection.There were multiple motivations for this Study. Planetary-scale magnetic fields are a window to a planet's interior and provide shielding of the planet's atmosphere. The Earth, Mercury, Ganymede, and the giant planets of the solar system all contain internal dynamo currents that generate planetary-scale magnetic fields. In turn, these internal dynamo currents arise from differential rotation, convection, compositional dynamics, or a combination of these in objects' interiors. If coupled to an energy source, such as the incident kinetic or magnetic energy from the solar wind or an orbiting satellite, a planet's magnetic field can produce intense electron cyclotron masers in its magnetic polar regions. The most well known example of this process in the solar system is the Jovian decametric emission, but all of the giant planets and the Earth contain similar electron cyclotron masers within their magnetospheres. Extrapolated to extrasolar planets, the remote detection of the magnetic field of an extrasolar planet would provide a means of obtaining constraints on the thermal state, composition, and dynamics of its interior--all of which will be difficult to determine by other means--as well as improved understanding of the basic planetary dynamo process.We review the findings from the Study, including potential mission concepts that emerged and recent developments toward one of the mission concepts, a space-based radio wavelength array. There was an identification of that radio wavelength observations would likely be key to making significant progress in this field.We acknowledge ideas and advice from the participants in the "Planetary Magnetic Fields: Planetary Interiors and Habitability" study organized by the W. M. Keck

  19. A Primary Study on the Recording Method of Interior Decoration in Qing Dynasty - A Case Study of Interior Decoration of Jingfu Palace

    Science.gov (United States)

    Rong, X.; He, B.; Zhuang, L.

    2017-08-01

    The existing interior decoration of Qing Dynasty is the master of that of each dynasty, with its diversified forms and complicated functions. As early as 1920s, the Rehabilitation Committee of Qing court recorded the interior furnishing in the Forbidden City by using Chinese traditional documentary method. Today, along with the constantly updated techniques, the recording method for the current situation of interior decoration has gradually developed from two-dimensional drawings into digital and comprehensive record. However, the current research results are mostly limited to a single field. This paper takes the digital record and reproduction about the current situation of interior decoration in Jingfu Palace in the Forbidden City as an example. Through the use of photogrammetry, 3D laser scanning, virtual display and other technology and equipment at the forefront of architectural field, it makes qualitative and quantitative record about the interior decoration inside Jingfu Palace. By combing with the interpretation of historical documents, it restores the original design ideas hidden behind the current situation of interior decoration, so as to summarize the best recording and reproducing method of interior decoration of Qing Dynasty.

  20. A Primary Study on the Recording Method of Interior Decoration in Qing Dynasty – A Case Study of Interior Decoration of Jingfu Palace

    Directory of Open Access Journals (Sweden)

    X. Rong

    2017-08-01

    Full Text Available The existing interior decoration of Qing Dynasty is the master of that of each dynasty, with its diversified forms and complicated functions. As early as 1920s, the Rehabilitation Committee of Qing court recorded the interior furnishing in the Forbidden City by using Chinese traditional documentary method. Today, along with the constantly updated techniques, the recording method for the current situation of interior decoration has gradually developed from two-dimensional drawings into digital and comprehensive record. However, the current research results are mostly limited to a single field. This paper takes the digital record and reproduction about the current situation of interior decoration in Jingfu Palace in the Forbidden City as an example. Through the use of photogrammetry, 3D laser scanning, virtual display and other technology and equipment at the forefront of architectural field, it makes qualitative and quantitative record about the interior decoration inside Jingfu Palace. By combing with the interpretation of historical documents, it restores the original design ideas hidden behind the current situation of interior decoration, so as to summarize the best recording and reproducing method of interior decoration of Qing Dynasty.

  1. Residential Interior Design as Complex Composition: A Case Study of a High School Senior's Composing Process

    Science.gov (United States)

    Smagorinsky, Peter; Zoss, Michelle; Reed, Patty M.

    2006-01-01

    This research analyzed the composing processes of one high school student as she designed the interiors of homes for a course in interior design. Data included field notes, an interview with the teacher, artifacts from the class, and the focal student's concurrent and retrospective protocols in relation to her design of home interiors. The…

  2. Content Analysis of Introductory Interior Design College Textbooks: A Study Revisited

    Science.gov (United States)

    Temple, Julie A.; Potthoff, Joy K.

    2013-01-01

    Introductory interior design texts adopted by design educators present information relevant to both historical and contemporary issues in interior design. According to one author, they provide a "survey of the field of interior design as it now exists" (Pile, 2007). A comparison of the content of contemporary texts with those of more…

  3. K-core decomposition of a protein domain co-occurrence network reveals lower cancer mutation rates for interior cores.

    Science.gov (United States)

    Emerson, Arnold I; Andrews, Simeon; Ahmed, Ikhlak; Azis, Thasni Ka; Malek, Joel A

    2015-01-01

    Network biology currently focuses primarily on metabolic pathways, gene regulatory, and protein-protein interaction networks. While these approaches have yielded critical information, alternative methods to network analysis will offer new perspectives on biological information. A little explored area is the interactions between domains that can be captured using domain co-occurrence networks (DCN). A DCN can be used to study the function and interaction of proteins by representing protein domains and their co-existence in genes and by mapping cancer mutations to the individual protein domains to identify signals. The domain co-occurrence network was constructed for the human proteome based on PFAM domains in proteins. Highly connected domains in the central cores were identified using the k-core decomposition technique. Here we show that these domains were found to be more evolutionarily conserved than the peripheral domains. The somatic mutations for ovarian, breast and prostate cancer diseases were obtained from the TCGA database. We mapped the somatic mutations to the individual protein domains and the local false discovery rate was used to identify significantly mutated domains in each cancer type. Significantly mutated domains were found to be enriched in cancer disease pathways. However, we found that the inner cores of the DCN did not contain any of the significantly mutated domains. We observed that the inner core protein domains are highly conserved and these domains co-exist in large numbers with other protein domains. Mutations and domain co-occurrence networks provide a framework for understanding hierarchal designs in protein function from a network perspective. This study provides evidence that a majority of protein domains in the inner core of the DCN have a lower mutation frequency and that protein domains present in the peripheral regions of the k-core contribute more heavily to the disease. These findings may contribute further to drug development.

  4. Interior Design.

    Science.gov (United States)

    Texas Tech Univ., Lubbock. Home Economics Curriculum Center.

    This document contains teacher's materials for an eight-unit secondary education vocational home economics course on interior design. The units cover period styles of interiors, furniture and accessories, surface treatments and lighting, appliances and equipment, design and space planning in home and business settings, occupant needs, acquisition…

  5. Study on improvement of continuous hydrogen production by photosynthetic biofilm in interior illuminant reactor.

    Science.gov (United States)

    Liu, Wenhui; Yuan, Linjiang; Wei, Bo

    2016-09-01

    In the present study, a new type of interior optical fiber illuminating reactor was developed for H2 production to solve the problem of luminous intensity attenuation at the center portion of a reactor, and an immobilization technique was used to enhance the stability of a continuous hydrogen production process with attached photosynthetic bacteria, using glucose as a sole carbon substrate for the indigenous photosynthetic bacteria (PSB) Rhodopseudomonas palustris SP-6. Results of the experiments showed that the interior optical fiber illuminating reactor produces H2 more efficiently and productively than the exterior light source reactor, with the cumulative H2 production, the maximum H2 production rate and H2 yield increased by 813ml, 11.3ml l-1 h-1 and 22.3%, respectively. The stability of the product of continuous hydrogen was realized by immobilizing PSB on the surface of powder active carbon(PAC). After adding the dosage of 2.0g l-1 PAC, the continuous steady operation of H2 production gave a high H2 yield of 1.398 mol H2 mol-1 glucose and an average H2 production rate of 35.1ml l-1 h-1 illuminating with a single interior optical fiber light source. Meanwhile, a higher H2 yield of 1.495 mol H2 mol-1 glucose and an average H2 production rate of 38.7ml l-1 h-1 were attained illuminating with a compound lamp in the continuous H2 production for 20 days.

  6. Pengaruh Elemen Desain Interior Terhadap Persepsi Maskulinitas (Studi Kasus: Barber Shop

    Directory of Open Access Journals (Sweden)

    Ardiles Septuaginta Sopakuwa

    2016-07-01

    Full Text Available Barber shop merupakan ruang publik yang masih belum diinfiltrasi oleh wanita dan diperuntukkan bagi pria saja, maka barber shop dianggap cocok untuk menjadi representasi ruang publik khusus pria. Penelitian ini berupaya mencari tahu dampak dari elemen lingkungan interior terhadap persepsi maskulin, sehingga ruang-ruang publik khusus pria yang ada saat ini dapat secara optimal memenuhi kebutuhan persepsi maskulin. Penelitian ini menggunakan stimulus visual berupa desain tiga dimensional dari lima kondisi barber shop yang merupakan manipulasi kombinasi variabel bebas berupa warna biru (A1 dan jingga (A2, serta material concrete (B1 dan kayu (B2. Kombinasi warna dan material ini menghasilkan empat kondisi eksperimental, dan  satu kondisi kontrol tanpa elemen warna maupun material experimental yang diterapkan. Eksperimen dilakukan terhadap 30 orang responden yang merupakan pelanggan barber shop untuk memberikan respon persepsi, emosi, dan sikap terhadap 5 buah stimulus visual yang menggambarkan kondisi barber shop. Data yang didapatkan dianalisa dengan metode ANOVA dan menunjukkan bahwa perbedaan respon terhadap keempat kondisi eksperimental tidak signifikan. Kondisi yang dipersepsi paling positif memiliki setidaknya satu elemen interior maskulin. Sementara kondisi yang dinilai paling mendukung emosi positif tidak menerapkan satu elemen interior maskulin pun. Sehingga menarik untuk menilai lebih jauh dampak kombinasi elemen interior ini terhadap respon responden. Kata Kunci: barber shop; desain eksperimental; emosi positif; persepsi maskulinitas; sikap positif.Influence of Interior Design Elements in Perception of Masculinity (Case Study: Barber ShopThe barber shop is one of the few public spaces that are not infiltrated by women. Therefore, the barber shop is a good representative of a male-only public space. This research was aimed at finding out the effect of interior-environment elements towards a masculine perception, so that current male

  7. Studi Gaya Vintage Pada Interior Cafe Di Surabaya. (Studi Kasus : Canary Cafe, DailySweet Cafe Dan Stilrod Cafe)

    OpenAIRE

    Mariana Wibowo, Lia Monica Tejo

    2014-01-01

    Research studies is about the application of vintage style in some cafe in Surabaya aims to determine the application of vintage design styles contained in the interior of the cafe Carpentier Kitchen , Canary Cafe , Daily Sweet Cafe , and Stilroad Cafe . Research studies of vintage style design will be carried out in Surabaya with a case study that some cafe in Surabaya that meets the criteria of vintage design styles , including the Carpentier Kitchen , Canary Cafe , Daily Sweet Cafe , and S...

  8. RECYCLED TEXTILES USED IN AUTOMOTIVE INTERIORS. CASE STUDY- FORD MOTOR COMPANY

    Directory of Open Access Journals (Sweden)

    CUC Sunhilde

    2017-05-01

    Full Text Available The environmental movement is affecting all industries, but the textile and automotive industries are two of the few that are constantly being criticized. The automotive industry is the subject of much research, it is the largest manufacturing activity, there is a complex supply chain, is resource intensive and emits various hazardous gases and waste products. The article reviews the current state of automotive industry regarding the textile application. Automotive textiles have been classified as belonging to a category called “Mobiltech” which is one of the main streams of technical textiles. The term means all type of textile components e.g. fibers, filaments, yarns and the fabric used in automobiles. They are classed as technical textile because of the very high performance specifications and special properties required, different from those used in clothing and other applications. The performance of the automotive textiles depends on the fibre properties, fabric structures and various finishes used in the manufacturing processes. After a short presentation of used fibres in car interiors, with advantages and disadvantages it is presented the sustainable textile solutions for the automotive industry. The paper focuses in particular of the use of recycling of textile waste to highlight how the processes of recycled textiles and sustainable textiles production are linked in the automotive sector. A case study with Ford Motor Company outlines and examines their design, development and manufacture process for automotive textiles for car seat coverings and interiors

  9. Service platforms management strategy: case study of an interior design firm

    Directory of Open Access Journals (Sweden)

    Leonel Del Rey de Melo Filho

    2015-03-01

    Full Text Available Platform management is a strategic tool for firms of various sizes, although it demands studies in the service sector. The aim of this paper is to investigate a use of platform management, designed to reach flexibility and operational dynamics in service projects. The studied platform is evaluated as a strategic resource in a particular case. The contributions of the service platform were explored from Resource-Based View (RBV and Service Marketing (SM perspectives, to study their effects on firms’ performance. The research strategy used was an exploratory case study in an interior design firm. The data collection techniques included a participant observation, document analysis and a focus group with firm managers. The research demonstrated that platform management is a strategic resource that assists with the planning of internal capabilities, market positioning, and provides better customer service.

  10. Investigation of the interior of Mercury through the study of its gravity, topography, and tidal response

    OpenAIRE

    Padovan, Sebastiano

    2014-01-01

    With the goal of furthering our understanding of the interior structure of Mercury, this work tries to answer the following two questions. What can the response of the planet to solar tides reveal about the interior structure? What is the thickness of the crust and what are the implications for the interior?By comparing the models developed here for the tidal response of Mercury with the response measured by the MErcury Surface Space ENvironment GEochemistry and Ranging spacecraft (MESSENGER)...

  11. Tinjauan Komponen dan Elemen Interior pada Restoran (Studi Kasus : Dinding Masif Solaria PVJ & BEC Bandung)

    OpenAIRE

    Kusnaedi, Iyus; Desrio, Misael; Agustanu, Faisal Rahman

    2013-01-01

    In general, the interior of a restaurant has a theme. The theme in the interior is supported by a variety of factors. In addition to interior design in accordance with the demands of its functions and activities, use of materials and interior elements of the right to form and reinforce these themes. selection of materials or material as constituent elements of the current space is very diverse, from the floor, wall to ceiling. For example Solaria restaurant that is now very much a presence in...

  12. Technology Solutions Case Study: Raised Ceiling Interior Duct System, New Smyrna, Florida

    Energy Technology Data Exchange (ETDEWEB)

    None

    2014-09-01

    Builder S.E. Volusia County Habitat for Humanity (SEVHFH) was interested in constructing a home to the new U.S. Department of Energy (DOE) Zero Energy Ready Home standards. SEVHFH partners with DOE team Building America Partnership for Improved Residential Construction on Habitat for Humanity homes and routinely builds to ENERGY STAR V3.1. The only modification to the design needed to comply with the Zero Energy Ready Home criteria was the interior duct requirement. Unwilling to incur the added costs of a foam roof deck or wall heights that exceed 8 ft to accommodate a fur-down chase, SEVHFH opted to build a fur-up or raised ceiling chase. This case study describes the project.

  13. Technology Solutions Case Study: Interior Foundation Insulation Upgrade-Minneapolis Residence

    Energy Technology Data Exchange (ETDEWEB)

    None

    2013-10-01

    This interior foundation project employed several techniques to improve performance and mitigate moisture issues: dimple mat; spray polyurethane foam insulation; moisture and thermal management systems for the floor; and paperless gypsum board and steel framing.

  14. 2012 Oregon Department of Interior, Bureau of Land Management (BLM) Lidar: Panther Creek Study Area

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Oregon Department of Interior, Bureau of Land Management (BLM) contracted with Watershed Sciences, Inc. to collect high resolution topographic LiDAR data for...

  15. Features of cadets’ adaptation universities Ukrainian Interior Ministry to study the art of sambo

    Directory of Open Access Journals (Sweden)

    V.V. Serebryak

    2014-05-01

    Full Text Available Purpose : to study the problem of adaptation of students to the study of throwing techniques Sambo in the educational process of professional orientation. Material : the study involved 53 first-year cadet. Also 8 teachers - experts. Results : the initial study of the features of self-defense techniques without weapons in the universities of the Interior Ministry of Ukraine. The factors that impede the development of technical action: lack of preparedness of students on basic psychophysical parameters, the desire to avoid pain when you fall; big breaks between classes. Developed a set of special exercises aimed at improving the mental and physical qualities of the future police officers. Complex promotes adaptation to the study of self-defense techniques without weapons. An efficiency of specific exercises to improve motor skills formation and neutralization of negative factors. Conclusions : recommend the use in the educational process special physical training specific exercises. Exercises gradually become more complex in structure as close as possible to the difficult coordination in unarmed combat.

  16. Diagnostic possibilities of body waves for studying the interior structure of mars

    Science.gov (United States)

    Raevskiy, S. N.; Gudkova, T. V.; Zharkov, V. N.

    2015-01-01

    The diagnostic possibilities of body waves for refining the models of the Martian interior structure are explored. The MATLAB-based software is developed for calculating the theoretical travel time curves and estimating the amplitudes of P- and S-waves for the predicted values of seismic moments of the marsquakes. The traveltimes of the P- and S-waves, as well as the reflected phases and the phases that passed through the core as the functions of epicentral distance, are compared for different test models of the interior of Mars.

  17. Experimental and Numerical Studies of Mechanically- and Convectively-Driven Turbulence in Planetary Interiors

    Science.gov (United States)

    Grannan, Alexander Michael

    2017-08-01

    characteristics of the resulting turbulence are investigated using meridional views to identify the dominate modes and spatial location of the turbulence. For the first time, measurements of the velocity in the equatorial plane are coupled with high resolution numerical simulations of the full flow field in identical geometry to characterize the instability mechanism, energy deposited into the fluid layer, and long-term evolution of the flow. The velocities determined through laboratory and numerical simulations when extrapolated to planets allow me to argue that the dynamics of mechanical forcing in low viscosity fluids may an important role as new and potentially large source of dissipation in planetary interiors. To study convective forcing, I have modified and performed a set of rotating and non-rotating hydrodynamic convection experiments using water as well as rotating and non-rotating magnetohydrodynamic convection in gallium. These studies are performed in a cylindrical geometry representing a model of high latitude planetary core style convection wherein the axis of rotation and gravity are aligned. For the studies using water, the steady columns that are characteristic of rotating convection and present in the dynamo models are likely to destabilize at the more extreme planetary parameters giving way to transitions to more complex styles of rotating turbulent flow. In the studies of liquid metal where the viscosity is lower, the onset of rotating convection occurs through oscillatory columnar convection well below the onset of steady columns. Such oscillatory modes are not represented at the parameters used by current dynamo models. Furthermore a suite of laboratory experiments shows that the imposition of rotational forces and magnetic forces both separately and together generate zeroeth order flow transitions that change the fundamental convective modes and heat transfer. Such regimes are more easily accessible to laboratory experiments then to numerical simulations

  18. Seismic Study of Magnetic Field in the Solar Interior H. M. Antia

    Indian Academy of Sciences (India)

    The first order effect of rotation due to the Coriolis force affect only the odd order splitting coefficients, a1,a3,a5,... and these have been used to infer the rotation rate in the solar interior. The even splitting coefficients arise from second order effects of rotation, through the centrifugal force and magnetic field or other departures ...

  19. A Study of Undergraduate Students' Alternative Conceptions of Earth's Interior Using Drawing Tasks

    Science.gov (United States)

    McAllister, Meredith L.

    2014-01-01

    Learning fundamental geoscience topics such as plate tectonics, earthquakes, and volcanoes requires students to develop a deep understanding of the conceptual models geologists use when describing the structure and dynamics of Earth's interior. Despite the importance of these mental models underlying much of the undergraduate geoscience…

  20. Modeling of Service-Drop Wires and Interior-Wiring Cables for Lightning Overvoltage Studies

    Science.gov (United States)

    Matsuura, Susumu; Noda, Taku; Nakamura, Masatoshi; Sakai, Hiroshi

    As the information society progresses, a variety of electronic appliances have come into wide use in common houses. If a lightning stroke causes faults or incorrect operations of these electronic appliances, a social economic loss is considered to be large. For this reason, the focus of lightning protection measures for distribution lines in Japan has expanded to include the low-voltage side of the distribution line in addition to the high-voltage side. In order to calculate lightning overvoltages at the low-voltage side, the surge characteristics of service-drop wires and interior-wiring cables have to be modeled accurately. First, this paper describes test results of the surge characteristics of service-drop wires and interior-wiring cables. The modal surge impedances and the propagation velocities of various service-drop wires and interior-wiring cables are obtained by the test. Based on the test results obtained, this paper proposes a modeling methodology of these wires and cables for accurate EMTP (Electro-Magnetic Transients Program) lightning overvoltage simulations. The proposed model is validated by comparing EMTP simulation results with field test results.

  1. Building America Case Study: Raised Ceiling Interior Duct System, New Smyrna, Florida (Fact Sheet)

    Energy Technology Data Exchange (ETDEWEB)

    2014-09-01

    One of BA-PIRC's longtime Habitat for Humanity partners, S.E. Volusia CO (SEVHFH), was interested in building a home to the new Challenge Home standards. SEVHFH routinely builds ENERGY STAR V3.1 homes. The only modification to their design needed to comply with the Challenge Home criteria was the interior duct requirement. Unwilling to incur the added costs of a foam roof deck or wall heights above 8 feet to accommodate a fur-down chase SEVHFH opted to build a fur-up or raised ceiling chase.

  2. Interior design and healing architecture

    DEFF Research Database (Denmark)

    Mogensen, Jeppe; Poulsen, Søren Bolvig; Hansen, Allan Grutt

    2015-01-01

    Hospital design is today influenced by the design concept healing architecture, stating that the patients’ healing process is promoted through accommodating physical surroundings. However, despite the increasing amount of research in the field of healing architecture, research on interior design...... and materials are rather limited. To compliment research in hospital interior design with particular focus on the use of interior textiles, this pilot study explores if the patients’ preferences for more home-like hospital interiors can be linked to a preference for textile-based furniture and materials...... the interpretation of the quantitative and qualitative data. 21% of the participants requested interior design improvements, and had a pronounced preference for the textile-based furniture and materials. For this particular group, the link between home-like hospital interiors and textile materials were thus...

  3. Integrating Sustainability in Interior Design Studio

    OpenAIRE

    Karslı, Umut Tuğlu

    2013-01-01

    Teaching methods on concept of sustainability are frequently searched in the interior architecture education. The purpose of this study is to propose a model for integrating sustainability in interior design studio. In this context, the first part of the research defines relationship between sustainability and interior architecture and determines sustainable interior design principles. In the second part, an interior design studio model is proposed and principles determined in the first part ...

  4. Frequency-independent radiation modes of interior sound radiation: Experimental study and global active control

    Science.gov (United States)

    Hesse, C.; Papantoni, V.; Algermissen, S.; Monner, H. P.

    2017-08-01

    Active control of structural sound radiation is a promising technique to overcome the poor passive acoustic isolation performance of lightweight structures in the low-frequency region. Active structural acoustic control commonly aims at the suppression of the far-field radiated sound power. This paper is concerned with the active control of sound radiation into acoustic enclosures. Experimental results of a coupled rectangular plate-fluid system under stochastic excitation are presented. The amplitudes of the frequency-independent interior radiation modes are determined in real-time using a set of structural vibration sensors, for the purpose of estimating their contribution to the acoustic potential energy in the enclosure. This approach is validated by acoustic measurements inside the cavity. Utilizing a feedback control approach, a broadband reduction of the global acoustic response inside the enclosure is achieved.

  5. Reconstruction for interior region-of-interest inverse geometry computed tomography: preliminary study

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Dong Su; Kim, Tae Ho; Kim, Kyeong Hyeon; Yoon, Do Kun; Suh, Tae Suk [Dept. of Biomedical Engineering, Research Institute of Biomedical Engineering, College of Medicine, The Catholic University of Korea, Seoul (Korea, Republic of); Kang, Seong Hee [Dept. of Radiation Oncology, Seoul National University Hospital, Seoul (Korea, Republic of); Cho, Min Seok [Dept. of Radiation Oncology, Asan Medical Center, Seoul (Korea, Republic of); Noh, Yu Yoon [Dept. of Radiation Oncology, Eulji University Hospital, Daejeon (Korea, Republic of)

    2017-04-15

    The inverse geometry computed tomography (IGCT) composed of multiple source and small size detector has several merits such as reduction of scatter effect and large volumetric imaging within one rotation without cone-beam artifact, compared to conventional cone-beam computed tomography (CBCT). By using this multi-source characteristics, we intend to present a selective and multiple interior region-of-interest (ROI) imaging method by using a designed source on-off sequence of IGCT. ROI-IGCT showed comparable image quality and has the capability to provide multi ROI image within a rotation. In this regard, it seems to be useful for diagnostic or image guidance for radiotherapy. ROI-IGCT showed comparable image quality and has the capability to provide multi ROI image within a rotation. Projection of ROI-IGCT is performed by selective irradiation, hence unnecessary imaging dose to non-interest region can be reduced. In this regard, it seems to be useful for diagnostic or image guidance for radiotherapy.

  6. Preservation of Art Style in Interior and Architecture Cultural Heritage Buildings: A Case Study in Hotel Kartika Wijaya & Hotel Niagara Malang

    Directory of Open Access Journals (Sweden)

    Sri Rachmayanti

    2016-01-01

    Full Text Available Kartika Wijaya Hotel and Niagara Hotel-Malang are two heritage buildings, which are well managed to preserve their historical building that, has been established since 1891. We can find good harmony and variety in interior elements and design styles, such as Colonial style, Art Noveau and Art Deco style. The purpose of documentating this heritage building that has different design styles is for those who needed. The data will be classified according to the period of the development of the buildings and characteristics of existing styles. The research objective on Kartika Wijaya hotel building and art styles is to preserve historic buildings in Indonesia, through documentation of interior elements and architectures, and to conducted a study of the interior and architectures elements, interior design ornaments, that founded in historical Kartika Wijaya Hotel and Niagara Hotel in Malang, whose the existence needs to be preserved. 

  7. Colour terms in the interior design process

    OpenAIRE

    Attiah, DY; Cheung, TLV; Westland, S; Bromilow, D

    2015-01-01

    Colour is a very important topic that interior designers need to consider. Considerable research has been conducted in the area of colour application in interior design; in this study we are concerned with colour terms in interior design, mainly the terms designers use and know about. Fifteen interior designers with varied professional backgrounds, but based in the Middle East (Saudi Arabia, Dubai, Bahrain, Lebanon, Egypt, and Turkey), were interviewed. Previously we reported that fourteen ou...

  8. Conjugate Heat Transfer Study at Interior Surface of NGV Leading Edge with Combined Shower Head and Impingement Cooling

    Directory of Open Access Journals (Sweden)

    Arun Kumar Pujari

    2014-01-01

    Full Text Available A computational study on conjugate heat transfer is carried out to present the behavior of nondimensional temperature and heat transfer coefficient of a Nozzle Guide Vane (NGV leading edge. Reynolds number of both mainstream flow and coolant impinging jets are varied. The NGV has five rows of film cooling holes arranged in shower head manner and four rows of impingement holes arranged in staggered manner. The results are presented by considering materials of different thermal conductivity. The results show that the mainstream flow affects the temperature distribution on the interior side of the vane leading edge for high conductivity material whereas it has negligible effects for low conductivity material. The effect of changing blowing ratio on internal heat transfer coefficient and internal surface temperature is also presented.

  9. NMR Studies of Protein Hydration and Protein-Ligand Interactions

    Science.gov (United States)

    Chong, Yuan

    Water on the surface of a protein is called hydration water. Hydration water is known to play a crucial role in a variety of biological processes including protein folding, enzymatic activation, and drug binding. Although the significance of hydration water has been recognized, the underlying mechanism remains far from being understood. This dissertation employs a unique in-situ nuclear magnetic resonance (NMR) technique to study the mechanism of protein hydration and the role of hydration in alcohol-protein interactions. Water isotherms in proteins are measured at different temperatures via the in-situ NMR technique. Water is found to interact differently with hydrophilic and hydrophobic groups on the protein. Water adsorption on hydrophilic groups is hardly affected by the temperature, while water adsorption on hydrophobic groups strongly depends on the temperature around 10 C, below which the adsorption is substantially reduced. This effect is induced by the dramatic decrease in the protein flexibility below 10 C. Furthermore, nanosecond to microsecond protein dynamics and the free energy, enthalpy, and entropy of protein hydration are studied as a function of hydration level and temperature. A crossover at 10 C in protein dynamics and thermodynamics is revealed. The effect of water at hydrophilic groups on protein dynamics and thermodynamics shows little temperature dependence, whereas water at hydrophobic groups has stronger effect above 10 C. In addition, I investigate the role of water in alcohol binding to the protein using the in-situ NMR detection. The isotherms of alcohols are first measured on dry proteins, then on proteins with a series of controlled hydration levels. The free energy, enthalpy, and entropy of alcohol binding are also determined. Two distinct types of alcohol binding are identified. On the one hand, alcohols can directly bind to a few specific sites on the protein. This type of binding is independent of temperature and can be

  10. The State of Environmentally Sustainable Interior Design Practice

    OpenAIRE

    Mihyun Kang; Denise A. Guerin

    2009-01-01

    Problem statement: Research that investigates how interior designers use environmentally sustainable interior design criteria in their design solutions has not been done. To provide a base to develop education strategies for sustainable interior design, this study examined the state of environmentally sustainable interior design practice. Approach: A national, Internet-based survey of interior design practitioners was conducted. To collect data, the random sample of US interior design practit...

  11. Iodine deficiency in children: A comparative study in two districts of south-interior Karnataka, India

    Directory of Open Access Journals (Sweden)

    Mansoor Ahmed

    2014-01-01

    Full Text Available Introduction: Iodine is an essential component of the hormones produced by the thyroid gland that are essential for mammalian life. Although goiter is the most visible sequelae of iodine deficiency, the major impact of hypothyroidism as a result of iodine deficiency is impaired neurodevelopment, particularly early in life. According to the World Health Organization, it is the single most preventable cause of mental retardation and brain damage. The simplest, most effective and inexpensive preventive method is the consumption of iodized salt. Objectives: The objective of the following study is to estimate the prevalence of goiter in children in the rural areas of Mysore and Coorg districts in India and estimate iodine levels in salt samples. Materials and Methods: A cross-sectional study in the age group of 6-12 years, using population proportionate to size systematic sampling method. The total sample size was 10,082: out of which 5337 was from Mysore and the rest from Coorg district. Clinical examination of the thyroid gland was done and salt samples collected for the estimation of Iodine. Results: The total prevalence of goiter was 19.01% in children of 6-12 years in Coorg district and 8.77% in Mysore district and it was more in females than in males. Conclusions: It was observed that iodine deficiency disorders is endemic in both districts, with a prevalence of 19.01% in children aged 6-12 years in Coorg district and 8.77% in Mysore district. Analysis of salt samples suggested that most of the samples were inadequately iodised (73.92% in Coorg and 45.92% in Mysore.

  12. Microbial volatile organic compounds in moldy interiors: a long-term climate chamber study.

    Science.gov (United States)

    Schuchardt, Sven; Strube, Andrea

    2013-06-01

    The present study simulated large-scale indoor mold damage in order to test the efficiency of air sampling for the detection of microbial volatile organic compounds (MVOCs). To do this, a wallpaper damaged by condensation was stored in a climate chamber (representing a hypothetical test room of 40 m(3) volume) and was inoculated with 14 typical indoor fungal strains. The chamber ventilation conditions were adjusted to common values found in moldy homes, and the mold growth was allowed to continue to higher than average values. The MVOC content of the chamber air was analyzed daily for a period of 105 days using coupled gas chromatography/mass spectrometry (GC-MS). This procedure guarantees MVOC profiling without external factors such as outdoor air, building materials, furniture, and occupants. However, only nine MVOCs could be detected during the sampling period, which indicates that the very low concentrated MVOCs are hardly accessible, even under these favorable conditions. Furthermore, most of the MVOCs that were detected cannot be considered as reliable indicators of mold growth in indoor environments. © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  13. Analytical study of interior noise control by fuselage design techniques on high-speed, propeller-driven aircraft

    Science.gov (United States)

    Revell, J. D.; Balena, F. J.; Koval, L. R.

    1980-01-01

    The acoustical treatment mass penalties required to achieve an interior noise level of 80 dBA for high speed, fuel efficient propfan-powered aircraft are determined. The prediction method used is based on theory developed for the outer shell dynamics, and a modified approach for add-on noise control element performance. The present synthesis of these methods is supported by experimental data. Three different sized aircraft are studied, including a widebody, a narrowbody and a business sized aircraft. Noise control penalties are calculated for each aircraft for two kinds of noise control designs: add-on designs, where the outer wall structure cannot be changed, and advanced designs where the outer wall stiffness level and the materials usage can be altered. For the add-on designs, the mass penalties range from 1.7 to 2.4 percent of the takeoff gross weight (TOGW) of the various aircraft, similar to preliminary estimates. Results for advanced designs show significant reductions of the mass penalties. For the advanced aluminum designs the penalties are 1.5% of TOGW, and for an all composite aircraft the penalties range from 0.74 to 1.4% of TOGW.

  14. Evaluation of Standard Concepts Design of Library Interior Physical Environment (Case Study at University of Ma Chung

    Directory of Open Access Journals (Sweden)

    Debri Haryndia Putri

    2016-12-01

    Full Text Available Currently the function of a room is not only used as a shelter, the function of the room itself to be increased as a refreshing or relaxation area for users to follow the development of creativity and technology in the field of design. The comfortable factor becomes the main factor that indicates a successful process of creating a space. No exception library. The nature of library seemed stiff because of its function as a place to read, now can be developed and made into more dynamic with the special design concepts or color patterns used. Libraries can be created a special concept that suits the characteristics of the users themselves. Most users of the library, especially in college libraries are teenagers. Naturally, teenagers like to gather with their friends and we have to facilitate this activity in our library design concept. In addition we can also determine the needs of users through research by questionnaire method. The answers of users can be mapped and drawn conclusions. To explore the research, the author reviewed some literature about library interior design and observed the library of Ma Chung University as a case study. The combined results of the method can be concluded and the discovery of ideal standards of physical environment. So, the library can be made as a comfortable reading environment so as to increased interest in reading behavior and the frequent visits of students in the library.

  15. Interior intrusion detection systems

    Energy Technology Data Exchange (ETDEWEB)

    Rodriguez, J.R.; Matter, J.C. (Sandia National Labs., Albuquerque, NM (United States)); Dry, B. (BE, Inc., Barnwell, SC (United States))

    1991-10-01

    The purpose of this NUREG is to present technical information that should be useful to NRC licensees in designing interior intrusion detection systems. Interior intrusion sensors are discussed according to their primary application: boundary-penetration detection, volumetric detection, and point protection. Information necessary for implementation of an effective interior intrusion detection system is presented, including principles of operation, performance characteristics and guidelines for design, procurement, installation, testing, and maintenance. A glossary of sensor data terms is included. 36 figs., 6 tabs.

  16. Sustainable Commercial Interior Design

    OpenAIRE

    Keane, Órla

    2009-01-01

    This dissertation looks at the environmental benefits of 3 key areas in relation to interior design: Energy, Water and Air; energy efficient lighting, water efficient plumbing fixtures and the effects of interior materials and finishes on indoor air quality. Qualitative research methodology: Extensive literature review of texts available on these topics, and also of the relevant building codes and environmental legislation applicable to Irish interior designers and the built environment. ...

  17. Interior intrusion detection systems

    International Nuclear Information System (INIS)

    Rodriguez, J.R.; Matter, J.C.; Dry, B.

    1991-10-01

    The purpose of this NUREG is to present technical information that should be useful to NRC licensees in designing interior intrusion detection systems. Interior intrusion sensors are discussed according to their primary application: boundary-penetration detection, volumetric detection, and point protection. Information necessary for implementation of an effective interior intrusion detection system is presented, including principles of operation, performance characteristics and guidelines for design, procurement, installation, testing, and maintenance. A glossary of sensor data terms is included. 36 figs., 6 tabs

  18. East Meets West--An Introduction to the Design of Residential Interiors in Contemporary Asian Countries. Asian Studies Module.

    Science.gov (United States)

    Hagan, Kay

    This curriculum module presents information for an introductory course designed to develop a cross-cultural awareness and appreciation of the rich opportunities for growth in interior design and related fields that has resulted from the expansion of the global marketplace. First, the instructional goals of the course are outlined, suggesting that…

  19. Radioactive Lysine in Protein Metabolism Studies

    Science.gov (United States)

    Miller, L. L.; Bale, W. F.; Yuile, C. L.; Masters, R. E.; Tishkoff, G. H.; Whipple,, G. H.

    1950-01-09

    Studies of incorporation of DL-lysine in various body proteins of the dog; the time course of labeled blood proteins; and apparent rate of disappearance of labeled plasma proteins for comparison of behavior of the plasma albumin and globulin fractions; shows more rapid turn over of globulin fraction.

  20. Structural Studies of Protein-Surfactant Complexes

    International Nuclear Information System (INIS)

    Chodankar, S. N.; Aswal, V. K.; Wagh, A. G.

    2008-01-01

    The structure of protein-surfactant complexes of two proteins bovine serum albumin (BSA) and lysozyme in presence of anionic surfactant sodium dodecyl sulfate (SDS) has been studied using small-angle neutron scattering (SANS). It is observed that these two proteins form different complex structures with the surfactant. While BSA protein undergoes unfolding on addition of surfactant, lysozyme does not show any unfolding even up to very high surfactant concentrations. The unfolding of BSA protein is caused by micelle-like aggregation of surfactant molecules in the complex. On the other hand, for lysozyme protein there is only binding of individual surfactant molecules to protein. Lysozyme in presence of higher surfactant concentrations has protein-surfactant complex structure coexisting with pure surfactant micelles

  1. Early Polarographic Studies on Proteins

    Czech Academy of Sciences Publication Activity Database

    Heyrovský, Michael

    2004-01-01

    Roč. 16, 13/14 (2004), s. 1067-1073 ISSN 1040-0397 Institutional research plan: CEZ:AV0Z4040901 Keywords : proteins * dropping mercury electrode * peptides Subject RIV: CG - Electrochemistry Impact factor: 2.038, year: 2004

  2. Perancangan Tata Cahaya pada Interior Rumah Tinggal

    Directory of Open Access Journals (Sweden)

    Dila Hendrassukma

    2014-04-01

    Full Text Available Homestay is a place where each individual coming back after doing her/his routine and non-routine daily activities. A good residential interior design would enhance the quality of life of its inhabitants. The majority of Indonesian population, Jakarta in particular, has been aware of the importance of designing their home interior properly. However, home interior lighting, which is key to successful design of an interior space, is often under-emphasized. Research tried to collect lighting techniques often used in residential interiors. The result is a brief explanation and easy to apply regarding the types of information that can be used to illuminate any activity on the interior of the residence. Qualitative method by literature study is used in the making of this research. 

  3. SANS Study of Protein Adsorption on Nanoparticles

    Science.gov (United States)

    Kumar, Sugam; Aswal, V. K.; Kohlbrecher, J.

    2011-07-01

    Adsorption of lysozyme protein on silica nanoparticle has been studied using small-angle neutron scattering (SANS) at pH 7. The measurements were carried out on fixed concentration (1 wt %) of nanoparticles and varying concentration of protein in the range 0 to 2 wt%. It has been found that the protein is adsorbed on the nanoparticle surface at very low protein concentrations whereas strong electrostatic interaction of lysozyme with silica nanoparticles at higher protein concentrations leads to the aggregation of nanoparticles. The adsorption is found to be increased with increase in the particle size and the aggregation is determined to be fractal structure.

  4. High pressure cosmochemistry of major planetary interiors: Laboratory studies of the water-rich region of the system ammonia-water

    Science.gov (United States)

    Nicol, Malcolm; Johnson, Mary; Boone, Steven; Cynn, Hyunchee

    1987-01-01

    Several studies relative to high pressure cosmochemistry of major planetary interiors are summarized. The behavior of gas-ice mixtures at very high pressures, studies of the phase diagram of (NH3) sub x (H2O) sub 1-x at pressures to 5GPa and temperatures from 240 to 370 K, single crystal growth of ammonia dihydrate at room temperature in order to determine their structures by x-ray diffraction, spectroscopy of chemical reactions during shock compression in order to evaluate how the reactions affect the interpretation of equation of state data obtained by shock methods, and temperature and x-ray diffraction measurements made on resistively heated wire in diamond anvil cells in order to obtain phase and structural data relevant to the interiors of terrestrial planets are among the studies discussed.

  5. Study of the earth's deep interior and crystallography. X-ray and neutron diffraction experiments under high pressures

    International Nuclear Information System (INIS)

    Yagi, Takehiko

    2014-01-01

    History of the study of the Earth's deep interior was reviewed. In order to understand Earth's deep interior from the view point of materials science, X-ray diffraction under high pressure and high temperature played very important role. Use of synchrotron radiation dramatically advanced this experimental technique and it is now possible to make precise X-ray study under the P-T conditions corresponding even to the center of the Earth. In order to clarify the behavior of light elements such as hydrogen, however, studies using neutron diffraction are also required. A new neutron beam line dedicated for high-pressure science is constructed at J-PARC and is now ready for use. (author)

  6. Dinâmicas e processos de inovaçâo em regiôes do interior de Portugal: caso de estudo = Dynamics and processes of innovation in the interior regions of Portugal: a case study

    Directory of Open Access Journals (Sweden)

    Maria Manuela Natario

    2011-12-01

    Full Text Available El presente trabajo tiene como objetivo analizar la dinámica y los procesos de innovación en las regiones interiores del centro de Portugal buscando identificar los factores que estimulan la dinámica territorial de la innovación. La preocupación por la dinámica de la innovación ha sido objeto de varios estudios en el contexto de los sistemas regionales de innovación y, más recientemente, se encuadra en el desarrollo del Modelo “Triple Hélix” (Etzkowitz y Leydesdorff, 2000; Dzisah y Etzkowitz, 2009. Este modelo integra el estudio de la interacción entre las hélices para promover la innovación. El estudio empírico se centra en las empresas de tres distritos interiores de la zona Centro de Portugal (Castelo Branco, Guarda y Viseu. Desde el punto de vista de la metodología, para la realización del estudio se envió un cuestionario a las empresas de estos tres distritos y se ha utilizado la aplicación de análisis estadístico multivariante “k-means clustering” para detectar patrones de comportamiento de las empresas relativos a su dinámica de innovación respecto al perfil de la región en términos de innovación, al espíritu de iniciativa empresarial, a la cooperación con las instituciones de enseñanza superior y a la proactividad de las instituciones públicas. Para verificar las hipótesis propuestas se recurrió a aplicación de tests de comparación múltiple de valores medios para estudiar las características únicas de cada grupo.The main objective of this paper is analysis the dynamics and processes of innovation in regions of interior centre of Portugal, seeking to identify factors that stimulate the territorial dynamics of innovation. The dynamics of innovation has been the subject of several studies in the context of regional innovation systems and more recently has been considered in the Model "Triple Helix" (Etzkowitz and Leydesdorff, 2000; Dzisah and Etzkowitz, 2009. This model integrates the interaction

  7. Co-Production of Actionable Science: Recommendations to the Secretary of Interior and a San Francisco Case Study

    Science.gov (United States)

    Behar, D. H.; Pfeffer, W. T.; Beier, P.

    2015-12-01

    "Actionable Science provides data, analyses, projections, or tools that can support decisions regarding the management of the risks and impacts of climate change. It is ideally co-produced by scientists and decision makers and creates rigorous and accessible products to meet the needs of stakeholders. (Report to the Secretary of the Interior, Advisory Committee on Climate Change and Natural Resource Science (ACCCNRS), March 30, 2015)During one 17 month period ending in 2013, three major reports on sea level rise from three highly respected science providers produced three divergent estimates of sea level rise. These reports collectively flummoxed the lay reader seeking direction for adaptation planning. Guidance documents soon emerged from state entities which caused further confusion. The City and County of San Francisco began developing "Guidance for Incorporating Sea Level Rise into Capital Planning" in 2013 at the direction of San Francisco Mayor Edwin Lee (http://onesanfrancisco.org/staff-resources/sea-level-rise-guidance/). The first task in developing this Guidance was to convert these highly technical reports into "actionable science." This required extensive expert elicitation to tease out their meaning and use value for decision making. This process, which resulted in detailed guidance on the use of SLR science in planning, is increasingly being called "co-production."Co-production requires both scientist and decision-maker to hear the other's perspective, reflect upon the decision-maker's precise needs, and translate peer review science into lay language and practical advice for decision making. The co-production dynamic was the subject of extensive discussion in the federal Advisory Committee on Climate Change and Natural Resource Science. The ACCCNRS recommendations (https://nccwsc.usgs.gov/acccnrs) include not only the new definition of Actionable Science cited above, but also a "How-To-Guide" that outlines principles for successfully creating a co

  8. Perancangan InteriorInterior World Center” di Surabaya

    OpenAIRE

    Handojo, Renita Olivia

    2014-01-01

    Interior World Center is a place that contain all needs and matters related to world of interior. The main purpose of Interior World Center is to give access and facilitate people in fulfill their needs that concern and correspond with interior world, that is to say with combine and integrate several interior activity into one in corporated place. Inside of this building there are several commercial space related with the interior world. The commercial spaces will support each other in order ...

  9. Interior Space: Representation, Occupation, Well-Being and Interiority

    OpenAIRE

    Power, Jacqueline

    2014-01-01

    This article will provide an overview of space as it is understood and engaged with from within the discipline of interior design/interior architecture. Firstly, the term interior will be described. Secondly, the paper will discuss space as a general concept, before exploring what space is speifically for the interior design/interior architecture discipline. How is space understood? What does space "look" like for interuior designers/interior architects?.

  10. A study of gizzard nematodes and renal coccidiosis in Canada geese (Branta canadensis interior) of the Mississippi Valley population

    Science.gov (United States)

    Tuggle, Benjamin N.

    1982-01-01

    A total of 309 Mississippi Valley Population Canada geese, Branta canadensis interior, of different sex and age groups was collected from three locations in the Mississippi Flyway from 1979-1981 and examined for gizzard nematodes and renal coccidia. Three species of nematodes were removed from the gizzards, Amidostomum anseris, A. spatulatum, and Epomidiostomum crami. The latter two species are reported from this population of geese for the first time. Gizzard nematodes were found in 95.2% of all Canada geese examined, with A. anseris being the most abundant of the three species. There was no statistically significant difference between immatures and adults in the abundance of total nematodes species however, immature geese carried significantly more A. anseris and adult geese harbored significantly more A. spatulatum and E. crami infections. No significant difference in gizzard worm infections between male and female birds was observed. The abundance of overall gizzard nematodes was greatest in Canada geese from Winisk, Ontario (11.9), but the abundance of worms in southern Illinois geese (10.0) was similar. Geese from Horicon National Wildlife Refuge had the lowest abundance of infection, 7.5. The overall abundance of nematodes showed a general increase the second year of the study in each sex and age group and at each collection area. Each of three species of nematodes was responsible for some degree of damage to the gizzard lining and koilin, but E. crami was the most pathogenic of the species recovered. The occurrence of renal coccidiosis in Canada geese of this flyway is reported for the first time; the etiologic agent is Eimeria clarkei. The oocysts and/or endogenous stages of E. clarkei were present in 6.8% of the Canada geese sampled and this was the only species found. Male and female geese showed no significant differences in E. clarkei infections, however, significantly more immature geese than adult geese were infected with this species. A cell

  11. Interior tomography: theory, algorithms and applications

    Science.gov (United States)

    Yu, Hengyong; Ye, Yangbo; Wang, Ge

    2008-08-01

    The conventional wisdom states that the interior problem (reconstruction of an interior region from projection data along lines only through that region) is NOT uniquely solvable. While it remains correct, our recent theoretical and numerical results demonstrated that this interior problem CAN be solved in a theoretically exact and numerically stable fashion if a sub-region within the interior region is known. In contrast to the well-established lambda tomography, the studies on this type of exact interior reconstruction are referred to as "interior tomography". In this paper, we will overview the development of interior tomography, involving theory, algorithms and applications. The essence of interior tomography is to find the unique solution from highly truncated projection data via analytic continuation. Such an extension can be done either in the filtered backprojection or backprojection filtration formats. The key issue for the exact interior reconstruction is how to invert the truncated Hilbert transform. We have developed a projection onto convex set (POCS) algorithm and a singular value decomposition (SVD) method and produced excellent results in numerical simulations and practical applications.

  12. Groundwater-Quality Data in the South Coast Interior Basins Study Unit, 2008: Results from the California GAMA Program

    Science.gov (United States)

    Mathany, Timothy M.; Kulongoski, Justin T.; Ray, Mary C.; Belitz, Kenneth

    2009-01-01

    Groundwater quality in the approximately 653-square-mile South Coast Interior Basins (SCI) study unit was investigated from August to December 2008, as part of the Priority Basins Project of the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The GAMA Priority Basins Project was developed in response to Legislative mandates (Supplemental Report of the 1999 Budget Act 1999-00 Fiscal Year; and, the Groundwater-Quality Monitoring Act of 2001 [Sections 10780-10782.3 of the California Water Code, Assembly Bill 599]) to assess and monitor the quality of groundwater used as public supply for municipalities in California, and is being conducted by the U.S. Geological Survey (USGS) in cooperation with the California State Water Resources Control Board (SWRCB). SCI was the 27th study unit to be sampled as part of the GAMA Priority Basins Project. This study was designed to provide a spatially unbiased assessment of the quality of untreated groundwater used for public water supplies within SCI, and to facilitate statistically consistent comparisons of groundwater quality throughout California. Samples were collected from 54 wells within the three study areas [Livermore, Gilroy, and Cuyama] of SCI in Alameda, Santa Clara, San Benito, Santa Barbara, Ventura, and Kern Counties. Thirty-five of the wells were selected using a spatially distributed, randomized grid-based method to provide statistical representation of the study unit (grid wells), and 19 were selected to aid in evaluation of specific water-quality issues (understanding wells). The groundwater samples were analyzed for organic constituents [volatile organic compounds (VOCs), pesticides and pesticide degradates, polar pesticides and metabolites, and pharmaceutical compounds], constituents of special interest [perchlorate and N-nitrosodimethylamine (NDMA)], naturally occurring inorganic constituents [trace elements, nutrients, major and minor ions, silica, total dissolved solids (TDS), and alkalinity

  13. Color in interior spaces

    OpenAIRE

    Demirörs, Müge Bozbeyli

    1992-01-01

    Ankara : The Department of Interior Architecture and Environmental Design and the Institute of Fine Arts of Bilkent University, 1992. Thesis (Master's) -- -Bilkent University, 1992. Includes bibliographical references leaves 95-99. Color can be approached from different perspectives and disciplines such as, biology, theory, technology, and psychology. This thesis discusses color, from the stand point of interior spaces, which to some extent involves most of these discipli...

  14. Interior Design Students Perceptions of Sustainability

    Science.gov (United States)

    Stark, Johnnie; Park, Jin Gyu

    2016-01-01

    Purpose: This longitudinal study assessed student perceptions of sustainable design issues in the context of an accredited interior design program. Although literature exists documenting the integration of sustainable strategies into interior design curriculum, more analysis is needed to determine the impact of program experiences on students'…

  15. Prescriptive Methodology as a Generative Tool: A Case Study Conducted at Introductory Interior Design Studio Level in the United Arab Emirates

    Directory of Open Access Journals (Sweden)

    Lina Ahmad

    2017-09-01

    Full Text Available In the U.A.E. (United Arab Emirates, interior design education is often misunderstood as interior decoration, wherein the former is a more comprehensive design approach to spaces formed by structural boundaries and curation of human interaction. The conducted case study addressed a small number of students enrolled in Interior Design Studio I at Zayed University, Abu Dhabi campus. In addition to traditional teaching methods compromised of individual desk critique sessions, group pin-ups and presentations, three innovative methods were implemented as a means of guiding students through the process: direct sequential instruction executed within an assigned time frame, reflection on the surfaced result and use of flat photography or panoramas as means of space communication. Throughout the three implemented stages of the project, and through utilizing the above-described generative methodology, students achieved complex representation and revealed higher spatial order related to human occupation and space inhabitation. This methodology allowed students to channel their work through complex sets of interconnected information and derived an outcome from an accumulative multi-layered resolution. The article presents the process and analyses the achieved outcomes.

  16. Relasi Penerapan Elemen Interior Healing Environment Pada Ruang Rawat Inap dalam Mereduksi Stress Psikis Pasien (Studi Kasus: RSUD. Kanjuruhan, Kabupaten Malang

    Directory of Open Access Journals (Sweden)

    Debri Haryndia Putri

    2013-12-01

    Full Text Available The pleasing atmosphere of medical environment is a friendly atmosphere so it can accelerate the adaptation process of patients. However, the medical environment is very often identical with fear, anxiety, and uncertainty that can suppress the immune system so that patients require longer treatment time and even hasten the complications during treatment occur. This study is conducted to analyze how to optimize the application of healing environment interior elements (such: circulation, lighting, color, interior supporting elements: natural elements, the position of social interaction and television inside the treatment room directly affect the patients psychologically. The research is at Kanjuruhan public hospital which has simple and candid interior physical condition. The results demonstrates that the elements of nature and natural lighting are potential to reduce patient stress, given the daily conditions of people who tend to be close to nature. The differences in economic background, culture, and community demographics would produce a different perception in looking at the most ideal and suitable healing elements for their treatment environment.

  17. Protein aggregation kinetics during Protein A chromatography. Case study for an Fc fusion protein.

    Science.gov (United States)

    Shukla, Abhinav A; Gupta, Priyanka; Han, Xuejun

    2007-11-09

    Protein A chromatography has come to be widely adopted for large-scale purification of monoclonal antibodies and Fc fusion proteins. The low pH conditions required for Protein A elution can often lead to aggregation issues for these products. A concerted study of the kinetics of aggregate formation and their relation to chromatography on Protein A media has been lacking. This paper provides a framework to describe aggregation kinetics for an Fc fusion protein that was highly susceptible to aggregate formation under low pH conditions. In contrast to what is usually expected to be a higher order reaction, first order aggregation kinetics were observed for this protein over a wide range of conditions. A comparison of the rate constants of aggregation forms an effective means of comparing various stabilizing additives to the elution buffer with one another. Inclusion of urea in the elution buffer at moderate concentrations (Protein A column were both found to be effective solutions to the aggregation issue. Elution from the Protein A resin was found to increase the aggregation rate constants over and above what would be expected from exposure to low pH conditions in solution alone. This demonstrates that Protein A-Fc interactions can destabilize product structure and increase the tendency to aggregate. The results presented here are anticipated to assist the development of Protein A process conditions for products that are prone to form high molecular weight aggregates during column elution.

  18. Capillary electrophoresis of proteins for proteomic studies.

    Science.gov (United States)

    Manabe, T

    1999-10-01

    Analyses of proteins in complex mixtures such as cell lyzates are presently performed mainly by sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis. For structural analysis, each protein in a spot is digested with proteases and the fragment peptides are subjected to Edman sequencing and/or mass spectrometry. These works aim at the total analysis of proteins in a complex mixture and reconstruction of their cooperative functions. Genomic studies are now being combined with these proteomic studies. This review article focuses on the application of capillary electrophoresis aiming at the total analysis of complex protein systems or structural analysis of each separated protein. From this viewpoint, articles on capillary zone electrophoresis, capillary isoelectric focusing, and sieving SDS capillary electrophoresis are reviewed. Since these techniques of capillary electrophoresis have been thoroughly reviewed previously, papers published in 1997 and 1998 are mainly covered.

  19. Observing Protein & Energy Nutrition (OPEN) Study

    Science.gov (United States)

    The Observing Protein and Energy Nutrition (OPEN) Study was designed to assess dietary measurement error by comparing results from self-reported dietary intake data with four dietary biomarkers: doubly labeled water and urinary nitrogen, sodium, and potassium.

  20. Questioning the implementation of habitat corridors: a case study in interior São Paulo using ants as bioindicators

    Directory of Open Access Journals (Sweden)

    DM. Lapola

    Full Text Available In this paper we operated ant collections in three inland Atlantic forest fragments and in the neighboring Edmundo Navarro de Andrade State Forest (FEENA, an Eucalyptus plantation located in Rio Claro, interior of São Paulo State. We show that the ant communities of the native forest fragments are more similar among themselves than to the ant community of FEENA. Thus we evidence that, in addition to the clear difference in vegetation segment, other components of the biota (like ants can be different between FEENA and the native forest fragments. Our results conveniently served as a basis to discuss the proposal of connecting FEENA to the three native forest fragments by a habitat corridor. These fragments are important to conservation purposes since they represent the biggest areas of native vegetation in the region.

  1. Numerical study of self-adaptive vibration suppression for flexible structure using interior inlay viscous fluid unit method

    Science.gov (United States)

    Zhang, Xiongwen; Li, Jun; Xu, Hui; Li, Guojun

    2006-11-01

    This paper investigates the usage of an interior inlay viscous fluid unit as a new vibration suppression method for flexible structures via numerical simulations. The first and second modes of vibration for a beam have been calculated using the commercial computational fluid dynamic package Fluent6.1, together with the liquid surface distribution and the fluid force. The calculated results show that the inlay fluid unit has suppressive effects on flexible structures. The liquid converges self-adaptively to locations of larger vibrations. The fluid force varies with the beam vibration at a phase difference of more than 180°. Thus the fluid force suppresses the beam vibration at most of the time.

  2. Interior Design in Architectural Education

    Science.gov (United States)

    Gurel, Meltem O.; Potthoff, Joy K.

    2006-01-01

    The domain of interiors constitutes a point of tension between practicing architects and interior designers. Design of interior spaces is a significant part of architectural profession. Yet, to what extent does architectural education keep pace with changing demands in rendering topics that are identified as pertinent to the design of interiors?…

  3. Geologic study of the interior Salt Domes of Northeast Texas Salt-Dome basin to investigate their suitability for possible storage of radioactive waste material

    International Nuclear Information System (INIS)

    1976-05-01

    The purpose of this study was to investigate the movement and hydrologic stability of the domes, to identify the domes which appear suitable for further study and consideration, and to outline the additional information needed to evaluate these domes. The growth of the interior salt domes appears to have slowed with geologic time and to have halted altogether. The Bullard, Whitehouse, and Keechi domes probably are not subject to significant dissolution at the present time. However, caprock found at Bullard and Whitehouse indicates that salt dissolution occurred at some period during the past 50 million years since Wilcox was deposited. It is recommended that shallow water wells be drilled and tested

  4. INTUITION IN INTERIOR DESIGN

    Directory of Open Access Journals (Sweden)

    Irina Solovyova

    2008-11-01

    Full Text Available Intuition enables individuals to develop an understanding of the structure of complex systems. In interior design many decisions are reached intuitively even though the process of formulating solutions may be argued rationally. Intuition is intrinsically intertwined with our collateral experiences, memories, and implicit thought. Design intuition draws on our entire experience, not only on what we consciously isolate as relevant information. In education we prohibit students from relying on their intuition and require solutions based on pure reason. The author of this paper argues for bringing intuitive decision making back into interior design as a legitimate design tactic.

  5. Interior design for dentistry.

    Science.gov (United States)

    Unthank, M; True, G

    1999-11-01

    In the increasingly complex, competitive and stressful field of dentistry, effectively designed dental offices can offer significant benefits. Esthetic, functional and life-cycle cost issues to be considered when developing your interior design scheme include color, finishes, lighting, furnishings, art and accessories. An appropriately designed dental office serves as a valuable marketing tool for your practice, as well as a safe and enjoyable work environment. Qualified interior design professionals can help you make design decisions that can yield optimum results within your budget.

  6. Prefab-Interiority

    DEFF Research Database (Denmark)

    Frier, Marie; Fisker, Anna Marie; Kirkegaard, Poul Henning

    2010-01-01

    qualities is significantly dependent on our constructive ability to economically and production-technically join building elements. Consequently this paper explores the potential for developing interiority as a theory and design principle for transforming constructive challenges within prefab practice....../S. As a research result the paper suggests a positioning of interiority as a theory and design principle for developing a sensuous prefab practice......., and practical realm of prefabrication, leaving the produced houses as monotonous box-like constructions rather than inhabitable homes. But what are the sensuous qualities actually spatially defining a home, and how to formulate design principles for developing and revealing these qualities within prefab...

  7. Diagonal chromatography to study plant protein modifications.

    Science.gov (United States)

    Walton, Alan; Tsiatsiani, Liana; Jacques, Silke; Stes, Elisabeth; Messens, Joris; Van Breusegem, Frank; Goormachtig, Sofie; Gevaert, Kris

    2016-08-01

    An interesting asset of diagonal chromatography, which we have introduced for contemporary proteome research, is its high versatility concerning proteomic applications. Indeed, the peptide modification or sorting step that is required between consecutive peptide separations can easily be altered and thereby allows for the enrichment of specific, though different types of peptides. Here, we focus on the application of diagonal chromatography for the study of modifications of plant proteins. In particular, we show how diagonal chromatography allows for studying proteins processed by proteases, protein ubiquitination, and the oxidation of protein-bound methionines. We discuss the actual sorting steps needed for each of these applications and the obtained results. This article is part of a Special Issue entitled: Plant Proteomics--a bridge between fundamental processes and crop production, edited by Dr. Hans-Peter Mock. Copyright © 2016 Elsevier B.V. All rights reserved.

  8. COLOR PERCEPTION IN INTERIOR DESIGN

    OpenAIRE

    ÖZSAVAŞ, Nilay

    2016-01-01

    In this study, it is mentioned about color that is a keyfactor of interior architecture profession. Firstly, space perception, colorand space interaction, effects of space, color and user relationship is explainedexcept color theories and definitions. Within this scope these are scrutinizingboth perception of color in the space and material and lighting issues thathave a big role in perception. Recent searches, practice methods and evaluationwith examples play a part in this article. It is ai...

  9. Probing the Solar Interior

    Indian Academy of Sciences (India)

    Home; Journals; Resonance – Journal of Science Education; Volume 3; Issue 3. Probing the Solar Interior Hearing the Heartbeats of the Sun. Ashok Ambastha. General ... Author Affiliations. Ashok Ambastha1. Joint In-Charge Udaipur Solar Observatory Physical Research laboratory P.O. Box No. 198 Udaipur 313 001, India ...

  10. Probing the Solar Interior

    Indian Academy of Sciences (India)

    Home; Journals; Resonance – Journal of Science Education; Volume 3; Issue 3. Probing the Solar Interior Hearing the Heartbeats of the Sun. Ashok Ambastha. General Article Volume 3 Issue 3 March 1998 pp 18-31. Fulltext. Click here to view fulltext PDF. Permanent link:

  11. The theory of discourse in the linguistic scenario: a new route for the clash interior x exterior in the studies of the language

    Directory of Open Access Journals (Sweden)

    Daiany Bonácio

    2017-10-01

    Full Text Available The language has always aroused human interest. Since ancient times, it was discussed by wise men like Aristotle and Plato. Philosophers discoursed, for example, on the relationship between the names and the things which they named, if the relationship was natural or conventional, in an attempt to explain the functioning of the language. Such discussions fomented a question: the studies of the language should focus on what aspect? What is going on inside the subject, in his ability to speak? Or what goes on outside, the manifestation of the interior considering the social? This impasse was extending over the linguistic studies. Faced with the reality described, this article aimed to discuss the impasse between an approach to the language focused on interiority and another focused on the exteriority, tracing a route through language studies from the classics, through the materialist theory of Michel Pêcheux to reach concepts proposed by the philosopher Michel Foucault, which will be used for analysis from a discursive perspective. The Discourse Analysis tries to think Linguistic out of this issue of logicism and sociology: it proposes to look at the discourse, offering another field of study for the language.

  12. Electrophoretic studies on rape seed proteins

    International Nuclear Information System (INIS)

    Chaudry, M.A.; Starr, A.; Bibi, N.

    1992-07-01

    Electrophoresis is a technique which separates biological molecules on the basis of charge and mass properties. The technique is used for separation, purification, characterization and identification of molecules/ compounds. Two major objectives for applications of electrophoresis have been studied in this report i.e. characterization of rape seed proteins and enzymes and identification of rape seed cultivars by polyacrylamide gel electrophoresis (PAGE). Gamma irradiation is being successfully used to create genetic variability and germination which brought about definite changes in the rape seed proteins reflected in different bands. These differences could be used to study variability in crop plants. (A.B.)

  13. Interior intrusion alarm systems

    International Nuclear Information System (INIS)

    Prell, J.A.

    1978-01-01

    In meeting the requirements for the safeguarding of special nuclear material and the physical protection of licensed facilities, the licensee is required to design a physical security system that will meet minimum performance requirements. An integral part of any physical security system is the interior intrusion alarm system. The purpose of this report is to provide the potential user of an interior intrusion alarm system with information on the various types, components, and performance capabilities available so that he can design and install the optimum alarm system for his particular environment. In addition, maintenance and testing procedures are discussed and recommended which, if followed, will help the user obtain the optimum results from his system

  14. INTUITION IN INTERIOR DESIGN

    OpenAIRE

    Irina Solovyova

    2008-01-01

    Intuition enables individuals to develop an understanding of the structure of complex systems. In interior design many decisions are reached intuitively even though the process of formulating solutions may be argued rationally. Intuition is intrinsically intertwined with our collateral experiences, memories, and implicit thought. Design intuition draws on our entire experience, not only on what we consciously isolate as relevant information. In education we prohibit students from relying on t...

  15. A guide to ancient protein studies

    DEFF Research Database (Denmark)

    Hendy, Jessica; Welker, Frido; Demarchi, Beatrice

    2018-01-01

    the phylogenetic reconstruction of extinct species to the investigation of past human diets and ancient diseases. However, there is no explicit consensus at present regarding standards for data reporting, data validation measures or the use of suitable contamination controls in ancient protein studies...

  16. Project management in interior design services

    OpenAIRE

    Şahinoglu, Alp

    1997-01-01

    Ankara : Bilkent University, Department of Interior Architecture and Environmental Design and Institute of Fine Arts, 1997. Thesis (Master's) -- Bilkent University, 1997. Includes bibliographical references. In this study, the concept of project management is analyzed within the framework of interior design services. Project management has been defined as the managing and coordination of all human and physical resources, in order to accomplish the predetermined goals (aim of the proj...

  17. Interior of the Moon

    Science.gov (United States)

    Weber, Renee C.

    2013-01-01

    A variety of geophysical measurements made from Earth, from spacecraft in orbit around the Moon, and by astronauts on the lunar surface allow us to probe beyond the lunar surface to learn about its interior. Similarly to the Earth, the Moon is thought to consist of a distinct crust, mantle, and core. The crust is globally asymmetric in thickness, the mantle is largely homogeneous, and the core is probably layered, with evidence for molten material. This chapter will review a range of methods used to infer the Moon's internal structure, and briefly discuss the implications for the Moon's formation and evolution.

  18. Studying protein-protein interactions via blot overlay/far western blot.

    Science.gov (United States)

    Hall, Randy A

    2015-01-01

    Blot overlay is a useful method for studying protein-protein interactions. This technique involves fractionating proteins on SDS-PAGE, blotting to nitrocellulose or PVDF membrane, and then incubating with a probe of interest. The probe is typically a protein that is radiolabeled, biotinylated, or simply visualized with a specific antibody. When the probe is visualized via antibody detection, this technique is often referred to as "Far Western blot." Many different kinds of protein-protein interactions can be studied via blot overlay, and the method is applicable to screens for unknown protein-protein interactions as well as to the detailed characterization of known interactions.

  19. Studying protein-protein interactions via blot overlay or Far Western blot.

    Science.gov (United States)

    Hall, Randy A

    2004-01-01

    Blot overlay is a useful method for studying protein-protein interactions. This technique involves fractionating proteins on SDS-PAGE, blotting to nitrocellulose or PVDF membrane, and then incubating with a probe of interest. The probe is typically a protein that is radiolabeled, biotinylated, or simply visualized with a specific antibody. When the probe is visualized via antibody detection, this technique is often referred to as "Far Western blot." Many different kinds of protein-protein interactions can be studied via blot overlay, and the method is applicable to screens for unknown protein-protein interactions as well as to the detailed characterization of known interactions.

  20. STUDY OF WHEAT PROTEIN DEGRADATION DURING GERMINATION

    Directory of Open Access Journals (Sweden)

    Eva Michalcová

    2012-06-01

    Full Text Available Glutens, the storage proteins of cereals, play significant role in technological and nutraceutical quality of cereal grains. Whereas the high content of glutens allows making better structure of dough, consummation of foods with high gluten content can cause digestive problems. In our work, we studied ability of wheat proteases to degrade proteins, especially glutens. Wheat grains were germinated for up to seven days at three different temperatures 15, 20, 30 °C and pH 3.0, 4.0, 5.5, 7.0, 8.0. Proteins were fractionated into salt-soluble albumins and globulins, alcohol-soluble gliadins and base-soluble glutenins. In these fractions, protein content and their composition were analyzed by Bradford method and SDS-PAGE (sodium dodecyl sulfate polyacrylamide gel electrophoresis. The results showed that remarkable degradation of glutens started after three days and the lowest concentration was measured at the seventh day of germination of wheat grain at temperature 20 °C, pH 5.5.

  1. Fragment molecular orbital method for studying lanthanide interactions with proteins

    Energy Technology Data Exchange (ETDEWEB)

    Tsushima, Satoru [Helmholtz-Zentrum Dresden-Rossendorf e.V., Dresden (Germany). Biophysics; Komeiji, Y. [National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba (Japan); Mochizuki, Y. [Rikkyo Univ., Tokyo (Japan)

    2017-06-01

    The binding affinity of the calcium-binding protein calmodulin towards Eu{sup 3+} was studied as a model for lanthanide protein interactions in the large family of ''EF-hand'' calcium-binding proteins.

  2. Studying protein-protein interactions using peptide arrays

    NARCIS (Netherlands)

    Katz, C.; Levy-Beladev, L.; Rotem-Bamberger, S.; Rito, T.; Rudiger, S.G.D.; Friedler, A.

    2010-01-01

    Screening of arrays and libraries of compounds is well-established as a high-throughput method for detecting and analyzing interactions in both biological and chemical systems. Arrays and libraries can be composed from various types of molecules, ranging from small organic compounds to DNA, proteins

  3. Fluorescence study of protein-lipid complexes with a new symmetric squarylium probe.

    Science.gov (United States)

    Ioffe, Valeriya M; Gorbenko, Galyna P; Deligeorgiev, Todor; Gadjev, Nikolai; Vasilev, Aleksey

    2007-06-01

    The novel symmetric squarylium derivative SQ-1 has been synthesized and tested for its sensitivity to the formation of protein-lipid complexes. SQ-1 binding to the model membranes composed of zwitterionic lipid phosphatidylcholine (PC) and its mixtures with anionic lipid cardiolipin (CL) in different molar ratios was found to be controlled mainly by hydrophobic interactions. Lysozyme (Lz) and ribonuclease A (RNase) exerted an influence on the probe association with lipid vesicles resulting presumably from the competition between SQ-1 and the proteins for bilayer free volume and modification of its properties. The magnitude of this effect was much higher for lysozyme which may stem from the amphipathy of protein alpha-helix involved in the membrane binding. Varying membrane composition provides evidence for the dye sensitivity to both hydrophobic and electrostatic protein-lipid interactions. Fluorescence anisotropy studies uncovered the restriction of SQ-1 rotational mobility in lipid environment in the presence of Lz and RNase being indicative of the incorporation of the proteins into bilayer interior. The results of binding, fluorescence quenching and kinetic experiments suggested lysozyme-induced local lipid demixing upon protein association with negatively charged membranes with threshold concentration of CL for the lipid demixing being 10 mol%.

  4. Exoplanet's Figure and Its Interior

    Science.gov (United States)

    Mian, Zhang; Cheng-li, Huang

    2018-01-01

    Along with the development of the observing technology, the observation and study on the exoplanets' oblateness and apsidal precession have achieved significant progress. The oblateness of an exoplanet is determined by its interior density profile and rotation period. Between its Love number k2 and core size exists obviously a negative correlation. So oblateness and k2 can well constrain its interior structure. Starting from the Lane-Emden equation, the planet models based on different polytropic indices are built. Then the flattening factors are obtained by solving the Wavre's integro-differential equation. The result shows that the smaller the polytropic index, the faster the rotation, and the larger the oblateness. We have selected 469 exoplanets, which have simultaneously the observed or estimated values of radius, mass, and orbit period from the NASA (National Aeronautics and Space Administration) Exoplanet Archive, and calculated their flattening factors under the two assumptions: tidal locking and fixed rotation period of 10.55 hours. The result shows that the flattening factors are too small to be detected under the tidal locking assumption, and that 28% of exoplanets have the flattening factors larger than 0.1 under the fixed rotation period of 10.55 hours. The Love numbers under the different polytropic models are solved by the Zharkov's approach, and the relation between k2 and core size is discussed.

  5. Immunochemical studies of yellowjacket venom proteins.

    Science.gov (United States)

    King, T P; Alagon, A C; Kuan, J; Sobotka, A K; Lichtenstein, L M

    1983-03-01

    The major proteins of yellowjacket venoms have been isolated and characterized immuno-chemically. They consist of hyaluronidase, phospholipase, and antigen 5. Venoms from three species of yellowjacket were studied. Vespula germanica, V. maculifrons, and V. vulgaris. The phospholipases could be isolated in good yield only when affinity chromatography was used to minimize limited proteolysis. A kallikrein-like peptidase was found present in the yellowjacket venom. Phospholipases from these three species were immunochemically indistinguishable from each other, as were their antigen 5s. Sera from individuals sensitive to yellowjacket venom contained IgE and IgG specific for antigen 5 and phospholipase.

  6. Conjugate Heat Transfer Study at Interior Surface of NGV Leading Edge with Combined Shower Head and Impingement Cooling

    OpenAIRE

    Arun Kumar Pujari; B. V. S. S. S. Prasad; N. Sitaram

    2014-01-01

    A computational study on conjugate heat transfer is carried out to present the behavior of nondimensional temperature and heat transfer coefficient of a Nozzle Guide Vane (NGV) leading edge. Reynolds number of both mainstream flow and coolant impinging jets are varied. The NGV has five rows of film cooling holes arranged in shower head manner and four rows of impingement holes arranged in staggered manner. The results are presented by considering materials of different thermal conductivity. T...

  7. Are current atomistic force fields accurate enough to study proteins in crowded environments?

    Directory of Open Access Journals (Sweden)

    Drazen Petrov

    2014-05-01

    Full Text Available The high concentration of macromolecules in the crowded cellular interior influences different thermodynamic and kinetic properties of proteins, including their structural stabilities, intermolecular binding affinities and enzymatic rates. Moreover, various structural biology methods, such as NMR or different spectroscopies, typically involve samples with relatively high protein concentration. Due to large sampling requirements, however, the accuracy of classical molecular dynamics (MD simulations in capturing protein behavior at high concentration still remains largely untested. Here, we use explicit-solvent MD simulations and a total of 6.4 µs of simulated time to study wild-type (folded and oxidatively damaged (unfolded forms of villin headpiece at 6 mM and 9.2 mM protein concentration. We first perform an exhaustive set of simulations with multiple protein molecules in the simulation box using GROMOS 45a3 and 54a7 force fields together with different types of electrostatics treatment and solution ionic strengths. Surprisingly, the two villin headpiece variants exhibit similar aggregation behavior, despite the fact that their estimated aggregation propensities markedly differ. Importantly, regardless of the simulation protocol applied, wild-type villin headpiece consistently aggregates even under conditions at which it is experimentally known to be soluble. We demonstrate that aggregation is accompanied by a large decrease in the total potential energy, with not only hydrophobic, but also polar residues and backbone contributing substantially. The same effect is directly observed for two other major atomistic force fields (AMBER99SB-ILDN and CHARMM22-CMAP as well as indirectly shown for additional two (AMBER94, OPLS-AAL, and is possibly due to a general overestimation of the potential energy of protein-protein interactions at the expense of water-water and water-protein interactions. Overall, our results suggest that current MD force fields

  8. A case study of interior low-frequency noise from box-shaped bridge girders induced by running trains: Its mechanism, prediction and countermeasures

    Science.gov (United States)

    Zhang, Xun; Li, Xiaozhen; Hao, Hong; Wang, Dangxiong; Li, Yadong

    2016-04-01

    A side effect of high-speed railway and urban rail transit systems is the associated vibration and noise. Since the use of concrete viaducts is predominant in railway construction due to scarce land resources, low-frequency (20-200 Hz) structure-radiated noise from concrete bridges is a principal concern. Although it is the most commonly used bridge type, the mechanism of noise emission from box-shaped bridge girders when subjected to impact forces from moving trains, which sounds like beating a drum, has not been well studied. In this study, a field measurement was first made on a simply-supported box-shaped bridge to record the acceleration of the slabs and the associated sound pressures induced by running trains. These data indicated that a significant beat-wave noise occurred in the box-shaped cavity when the train speed was around 340 km/h, which arose from the interference between two sound waves of 75.0 Hz and 78.8 Hz. The noise leakage from the bridge expansion joint was serious and resulted in obvious noise pollution near the bridge once the beat-wave noise was generated in the cavity. The dominant frequency of the interior noise at 75.0 Hz was confirmed from the spectrum of the data and the modal analysis results, and originated from the peak vibration of the top slab due to resonance and the first-order vertical acoustic mode, which led to cavity resonance, amplifying the corresponding noise. The three-dimensional acoustic modes and local vibration modes of the slab were calculated by using the finite element method. A simplified vehicle-track-bridge coupling vibration model was then developed to calculate the wheel-rail interaction force in a frequency range of 20-200 Hz. Numerical simulations using the boundary element method confirmed the cavity resonance effect and the numerical results agreed well with the data. Based on the calibrated numerical model, three noise reduction measures, i.e., adding a horizontal baffle in the interior cavity, narrowing

  9. Using Fluorescent Protein Fusions to Study Protein Subcellular Localization and Dynamics in Plant Cells.

    Science.gov (United States)

    Cui, Yong; Gao, Caiji; Zhao, Qiong; Jiang, Liwen

    2016-01-01

    Studies of protein subcellular localization and dynamics are helpful in understanding the cellular functions of proteins in an organism. In the past decade, the use of green fluorescent protein (GFP) as a fusion tag has dramatically extended our knowledge in this field. Transient expression and stable transformation of GFP-tagged proteins have been wildly used to study protein localization in vivo in different systems. Although GFP-based tags provide a fast and convenient way to characterize protein properties in living cells, several reports have demonstrated that GFP fusions might not accurately reflect the localization of the native protein as GFP tags may alter the protein properties. To facilitate proper usage of GFP tags in plant cell biology study, we describe detailed protocols to identify possible inhibitory effects of fluorescent tags on protein subcellular localization and to determine if a fluorescently tagged protein is localized to the correct subcellular compartment. Using Arabidopsis Endomembrane protein 12 (EMP12) as an example, we first show the possible inhibitory effect of GFP tags on proper protein localization and then describe the immunofluorescence labeling method to verify the correct localization of GFP fusion proteins. Next, a method is presented using the ImageJ program with the Pearson-Spearman correlation (PSC) colocalization plug-in for statistical quantification of colocalization ratios of two fluorophores. Finally we provide a detailed method for protein dynamics studies using spinning disk confocal microscopy in Arabidopsis cells.

  10. Integration process of theoretical courses with design studios in undergraduate education: Case studies of architecture and interior design studios

    Directory of Open Access Journals (Sweden)

    Ozmehmet Ecehan

    2016-01-01

    Full Text Available The formulations of studios are the most critical problem of design studies, because the foundation of further architectural education is based on these design studios. This paper focuses on discussions of studiobased design learning systems and curriculum developments on integral design studios that aims significant and innovative frameworks. In this context, integrated design studios are the newest approaches of architectural education. In this education system every studio has its own integral course. Integral courses give support to the design studios. This support can be either theoretical or practical. Knowledge that is related with the context of the design studio can be explained in this integrated course in some cases, in some cases as simulation program can be explained in some parts of the course. The support of the integral courses to the studios must be evaluated deeply. This paper presents the positive parts and negative parts of the new integral studio approach in this context. By this way, strong and weak parts of this education system is put forward.

  11. Prospective study on antimicrobial protein of Spirastrella inconstans ...

    African Journals Online (AJOL)

    hp

    contains a 3,000 Da protein (Figure 1). Thus this study shows that this protein of. Spirastrella inconstans has anti MRSA activity. “1, 2”: Protein precipitates by ammounium sulphate precipitation method;. “M”: Low molecular weight marker. Figure 1: Separation of crude protein in Spirastrella inconstans by SDS-PAGE.

  12. Preliminary study on chicken feather protein-based wood adhesives

    Science.gov (United States)

    Zehui Jiang; Daochun Qin; Chung-Yun Hse; Monlin Kuo; Zhaohui Luo; Ge Wang; Yan Yu

    2008-01-01

    The objective of this preliminary study was to partially replace phenol in the synthesis of phenol-formaldehyde resin with feather protein. Feather protein–based resins, which contained one part feather protein and two parts phenol, were formulated under the conditions of two feather protein hydrolysis methods (with and without presence of phenol during...

  13. Interior design conceptual basis

    CERN Document Server

    Sully, Anthony

    2015-01-01

    Maximizing reader insights into interior design as a conceptual way of thinking, which is about ideas and how they are formulated. The major themes of this book are the seven concepts of planning, circulation, 3D, construction, materials, colour and lighting, which covers the entire spectrum of a designer’s activity. Analysing design concepts from the view of the range of possibilities that the designer can examine and eventually decide by choice and conclusive belief the appropriate course of action to take in forming that particular concept, the formation and implementation of these concepts is taken in this book to aid the designer in his/her professional task of completing a design proposal to the client. The purpose of this book is to prepare designers to focus on each concept independently as much as possible, whilst acknowledging relative connections without unwarranted influences unfairly dictating a conceptual bias, and is about that part of the design process called conceptual analysis. It is assu...

  14. Springtime Flood Risk Reduction in Rural Arctic: A Comparative Study of Interior Alaska, United States and Central Yakutia, Russia

    Directory of Open Access Journals (Sweden)

    Yekaterina Y. Kontar

    2018-03-01

    Full Text Available Every spring, riverine communities throughout the Arctic face flood risk. As the river ice begins to thaw and break up, ice jams—accumulation of chunks and sheets of ice in the river channel, force melt water and ice floes to back up for dozens of kilometers and flood vulnerable communities upstream. Via a comparative analysis between two flood-prone communities in Alaska and Yakutia (Siberia, this study examines key components of flood risk—hazards, exposure, and vulnerability, and existing practices in flood risk reduction in rural Arctic. The research sites are two rural communities—Galena (Yukon River and Edeytsy (Lena River, which sustained major ice-jam floods in May 2013. The data was acquired through a combination of direct observations on site, review of documents and archives, focus group discussions, and surveys. Five focus groups with US and Russian representatives from disaster management agencies revealed a few similar patterns as well as significant differences in flood risk reduction strategies. The main differences included higher reliance on mechanical and short-term ice jam and flood mitigation efforts (e.g., ice-jam demolition in the Russian Arctic, and lack of a centralized flood management model in the US. Surveys conducted among population at risk during the site visits to Edeytsy (November 2015 and Galena (March 2016 revealed higher satisfaction levels with the existing flood risk reduction efforts among Edeytsy residents. Survey respondents in Galena indicated the lack of ice jam removal and other flood prevention measures as the key drawback in the existing flood management. Historical analysis, conducted via the disaster Pressure and Release (PAR model, revealed that springtime flood risk in both regions results from complex interactions among a series of natural processes that generate conditions of hazard, and human actions that generate conditions of communities’ exposure and vulnerability. The analysis

  15. A Comparative Study of Applying Active-Set and Interior Point Methods in MPC for Controlling Nonlinear pH Process

    Directory of Open Access Journals (Sweden)

    Syam Syafiie

    2014-06-01

    Full Text Available A comparative study of Model Predictive Control (MPC using active-set method and interior point methods is proposed as a control technique for highly non-linear pH process. The process is a strong acid-strong base system. A strong acid of hydrochloric acid (HCl and a strong base of sodium hydroxide (NaOH with the presence of buffer solution sodium bicarbonate (NaHCO3 are used in a neutralization process flowing into reactor. The non-linear pH neutralization model governed in this process is presented by multi-linear models. Performance of both controllers is studied by evaluating its ability of set-point tracking and disturbance-rejection. Besides, the optimization time is compared between these two methods; both MPC shows the similar performance with no overshoot, offset, and oscillation. However, the conventional active-set method gives a shorter control action time for small scale optimization problem compared to MPC using IPM method for pH control.

  16. Thermokarst lake dynamics and its influence on biogeochemical sediment characteristics: A case study from the discontinuous permafrost zone in Interior Alaska

    Science.gov (United States)

    Lenz, J.; Walter Anthony, K. M.; Maio, C. V.; Matuszewski, F.; Grosse, G.

    2017-12-01

    Under currently projected scenarios of climate warming, discontinuous warm permafrost in Interior Alaska is expected to experience widespread disappearance. Thermokarst ponds and lakes are evidence for rapid permafrost thaw and amplify deep thaw by talik development. During the thawing process, previously preserved organic matter is made available for decomposition and former permafrost carbon is potentially released as greenhouse gases carbon dioxide and methane. In the course of lake development and shoreline expansion, both, younger near-surface and older organic matter from slumping shores are potentially deposited in the lake basin. Lake internal bioproductivity is complementing carbon accumulation in lacustrine deposits and provides an additional source of young carbon. This study presents results of two intersecting, limnolithological transects of 5 sediment cores from Goldstream Lake, a typical small, boreal thermokarst lake in Interior Alaska. We here distinguish external terrestrial and internal aquatic carbon contributions to sediments based on sediment samples that were analyzed for the total organic carbon/total nitrogen ratio (C/N) as well as stable carbon isotopes. The littoral zone with actively eroding shorelines is characterized by methane seeps produced from anaerobic microbial decomposition; however, near-shore sediments have surprisingly low total organic carbon contents with a mean of 1.5 wt%; the low C/N ratio of 8.7 indicate a dominance of lacustrine plant material. Very similar results were found for sediments in the central basin, but here a clear shift to a terrestrial carbon signal (C/N of 22) with total organic carbon content of almost 30 wt% is presumably indicating the presence of a trash layer featuring largely terrestrial plants submerged during the initial lake phase. The talik sediments have carbon storage similar to the lake sediments but in contrast are not layered. Subarctic aquatic environments such as Goldstream Lake

  17. Engineering Lipid Bilayer Membranes for Protein Studies

    Science.gov (United States)

    Khan, Muhammad Shuja; Dosoky, Noura Sayed; Williams, John Dalton

    2013-01-01

    Lipid membranes regulate the flow of nutrients and communication signaling between cells and protect the sub-cellular structures. Recent attempts to fabricate artificial systems using nanostructures that mimic the physiological properties of natural lipid bilayer membranes (LBM) fused with transmembrane proteins have helped demonstrate the importance of temperature, pH, ionic strength, adsorption behavior, conformational reorientation and surface density in cellular membranes which all affect the incorporation of proteins on solid surfaces. Much of this work is performed on artificial templates made of polymer sponges or porous materials based on alumina, mica, and porous silicon (PSi) surfaces. For example, porous silicon materials have high biocompatibility, biodegradability, and photoluminescence, which allow them to be used both as a support structure for lipid bilayers or a template to measure the electrochemical functionality of living cells grown over the surface as in vivo. The variety of these media, coupled with the complex physiological conditions present in living systems, warrant a summary and prospectus detailing which artificial systems provide the most promise for different biological conditions. This study summarizes the use of electrochemical impedance spectroscopy (EIS) data on artificial biological membranes that are closely matched with previously published biological systems using both black lipid membrane and patch clamp techniques. PMID:24185908

  18. Self-assembling peptide and protein nanodiscs for studies of membrane proteins

    DEFF Research Database (Denmark)

    Midtgaard, Søren Roi

    investigations of membrane proteins by traditional X-ray crystallography have proved a difficult challenge, and a surprisingly small amount of membrane proteins has been crystalized so far. This implies that development of lipoproteins as a platform for studying membrane proteins is much needed. In this thesis......Particles containing both lipids and proteins (so-called lipoproteins) are vital to study. They are selfassembling particles that, in the human body, are responsible for the transport of lipids and cholesterol. Due to the increasing problems of obesity and related illnesses in the world, obtaining...... for working with lipoprotein particles are their potential in the study membrane proteins. Membrane proteins are responsible for most of the transport in and out of cells and signaling between cells. As an example G-protein coupled receptors, a class of membrane proteins, are the third largest class...

  19. SAS-Based Studies of Protein Fibrillation

    DEFF Research Database (Denmark)

    Marasini, Carlotta; Vestergaard, Bente

    2017-01-01

    .Small angle scattering is an optimal method for structural studies of the fibrillation process in order to further the knowledge of the associated diseases. The recorded scattering data include the scattering contribution of all the species in solution and must be decomposed to enable structural modeling...... of the individual components involved during the fibrillation, notably without physical separation of the species. In this chapter we explain how to optimize a small angle scattering analysis of the fibrillation process and the basic principles behind analysis of the data. We include several practical tips......Protein fibrillation is associated with a number of fatal amyloid diseases (e.g. Alzheimer's and Parkinson's diseases). From a structural point of view, the aggregation process starts from an ensemble of native states that convert into transiently formed oligomers, higher order assemblies...

  20. Study of wheat protein based materials

    Science.gov (United States)

    Ye, Peng

    Wheat gluten is a naturally occurring protein polymer. It is produced in abundance by the agricultural industry, is biodegradable and very inexpensive (less than $0.50/lb). It has unique viscoelastic properties, which makes it a promising alternative to synthetic plastics. The unplasticized wheat gluten is, however, brittle. Plasticizers such as glycerol are commonly used to give flexibility to the articles made of wheat gluten but with the penalty of greatly reduced stiffness. Former work showed that the brittleness of wheat gluten can also be improved by modifying it with a tri-thiol additive with no penalty of reduced stiffness. However, the cost of the customer designed tri-thiol additive was very high and it was unlikely to make a cost effective material from such an expensive additive. Here we designed a new, inexpensive thiol additive called SHPVA. It was synthesized from polyvinyl alcohol (PVA) through a simple esterification reaction. The mechanical data of the molded wheat gluten/SHPVA material indicated that wheat gluten was toughened by SHPVA. As a control, the wheat gluten/PVA material showed no improvement compared with wheat gluten itself. Several techniques have been used to characterize this novel protein/polymer blend. Differential scanning calorimetric (DSC) study showed two phases in both wheat gluten/PVA and wheat gluten/SHPVA material. However, scanning electron microscope (SEM) pictures indicated that PVA was macroscopically separated from wheat gluten, while wheat gluten/SHPVA had a homogeneous look. The phase image from the atomic force microscope (AFM) gave interesting contrast based on the difference in the mechanical properties of these two phases. The biodegradation behavior of these protein/polymer blends was examined in soil. SHPVA was not degraded in the time period of the experiment. Wheat gluten/SHPVA degraded slower than wheat gluten. We also developed some other interesting material systems based on wheat gluten, including the

  1. Fluorescence Studies of Protein Crystal Nucleation

    Science.gov (United States)

    Pusey, Marc; Sumida, John

    2000-01-01

    -association process is a function of the protein concentration relative to the saturation concentration, and observing it in dilute solution (conc. less than or equal to 10(exp -5)M) requires that the experiments be performed under low solubility conditions, i.e., low temperatures and high salt concentrations. Data from preliminary steady state FRET studies with N-terminal bound pyrene acetic acid (PAA-lys, donor, Ex 340 nm, Em 376 nm) and asp101 LY-lys as an acceptor showed a consistent trend of decreasing donor fluorescence intensity with increasing total protein concentration. The FRET data have been obtained at pH 4.6, 0.1M NaAc buffer, at 5 and 7% NaCl, 4 C. The corresponding C(sub sat) values are 0.471 and 0.362 mg/ml (approx. 3.3 and approx. 2.5 x 10(exp -5)M respectively). The donor fluorescence decrease is more pronounced at7% NaCl, consistent with the expected increased intermolecular interactions at higher salt concentrations as reflected in the lower solubility. Results from these and other ongoing studies will be discussed in conjunction with an emerging model for how tetragonal lysozyme crystals nucleate and the relevance of that model to other proteins.

  2. Graviatoms with de Sitter Interior

    Directory of Open Access Journals (Sweden)

    Irina Dymnikova

    2013-01-01

    Full Text Available We present a graviatom with de Sitter interior as a new candidate to atomic dark matter generically related to a vacuum dark energy through its de Sitter vacuum interior. It is a gravitationally bound quantum system consisting of a nucleus represented by a regular primordial black hole (RPBH, its remnant or gravitational vacuum soliton G-lump, and a charged particle. We estimate probability of formation of RPBHs and G-lumps in the early Universe and evaluate energy spectrum and electromagnetic radiation of graviatom which can in principle bear information about a fundamental symmetry scale responsible for de Sitter interior and serve as its observational signatures.

  3. Interior Design Standards in the Secondary FCS Curriculum

    Science.gov (United States)

    Katz, Shana H.; Smith, Bettye P.

    2006-01-01

    This article deals with a study on interior design standards in the secondary FCS curriculum. This study assessed the importance FCS teachers placed on content standards in the interior design curriculum to help determine the amount of time and emphasis to place on the units within the courses. A cover letter and questionnaire were sent…

  4. Interior Pathways to Dissipation of Mesoscale Energy

    Energy Technology Data Exchange (ETDEWEB)

    Nadiga, Balasubramanya T. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2018-01-27

    This talk at Goethe University asks What Powers Overturning Circulation? How does Ocean Circulation Equilibrate? There is a HUGE reservoir of energy sitting in the interior ocean. Can fluid dynamic instabilities contribute to the mixing required to drive global overturning circulation? Study designed to eliminate distinguished horizontal surfaces such as bottom BL and surface layer

  5. Building of Requirement: Liberating Academic Interior Architecture

    Science.gov (United States)

    McLane, Yelena; Dawkins, Jim

    2014-01-01

    The authors focus on the strategies employed in the recent renovation of the William Johnston Building at Florida State University, in which the historical exterior was preserved, while the interiors were adapted to new functions as classrooms, study centers, and common spaces with intentionally undefined purposes. The building's various use…

  6. Protein turnover in children studied using 15N

    International Nuclear Information System (INIS)

    Pencharz, P.B.

    1983-01-01

    In 12 neonates the effect of the route of feeding on protein turnover rates was studied, and in 8 children suffering from cystic fibrosis the effect of nutritional rehabilitation on the protein metabolism was examined

  7. Amphipathic agents for membrane protein study.

    Science.gov (United States)

    Sadaf, Aiman; Cho, Kyung Ho; Byrne, Bernadette; Chae, Pil Seok

    2015-01-01

    Membrane proteins (MPs) are insoluble in aqueous media as a result of incompatibility between the hydrophilic property of the solvent molecules and the hydrophobic nature of MP surfaces, normally associated with lipid membranes. Amphipathic compounds are necessary for extraction of these macromolecules from the native membranes and their maintenance in solution. The amphipathic agents surround the hydrophobic segments of MPs, thus serving as a membrane mimetic system. Of the available amphipathic agents, detergents are most widely used for MP manipulation. However, MPs encapsulated by conventional detergent micelles have a tendency to undergo structural degradation, hampering MP advance, and necessitating the development of novel detergents with enhanced efficacy for MP study. In this chapter, we will introduce both conventional and novel classes of detergents and discuss about the chemical structures, design principles, and efficacies of these compounds for MP solubilization and stabilization. The behaviors of those agents toward MP crystallization will be a primary topic in our discussion. This discussion highlights the common features of popular conventional/novel detergents essential for successful MP structural study. The conclusions reached by this discussion would not only enable MP scientists to rationally select a set of detergent candidates among a large number of detergents but also provide detergent inventors with useful guidelines in designing novel amphipathic systems. © 2015 Elsevier Inc. All rights reserved.

  8. Assessing the accuracy of crown biomass equations for the major commercial species of the interior northwest: study plan and preliminary results

    Science.gov (United States)

    David L.R. Affleck; Brian R. Turnquist

    2012-01-01

    Fueled by the insistencies of wildfire mitigation, bioenergy development, and carbon sequestration, there is growing demand for reliable characterizations of crown and stem biomass stocks in conifer forests of the Interior Northwest, United States (western Montana, northern Idaho, and eastern Washington). Predictive equations for crown biomass have been developed for...

  9. Study of sperm proteins in different mammalian species

    OpenAIRE

    Pohlová, Alžběta

    2016-01-01

    Reproduction is an essential feature of all animals and a fundamental step to produce new generations. Study of sperm proteins is crucial for understanding of the sperm-egg recognition. We searched out sperm surface proteins involving in the zona pellucida (ZP) binding and studied whether these proteins are preserved throughout mammalian species. Indirect immunofluorescent technique was used to test a panel of monoclonal antibodies prepared against boar sperm surface proteins on spermatozoa o...

  10. How Technology Influences Interior Design.

    Science.gov (United States)

    McDavitt, Tish

    1999-01-01

    Examines telecommunication technology's influences on interior school design and effective learning, and discusses how to implement this technology into the school. Building the infrastructure to support telecommunications in an educational setting and the importance of effective lighting are discussed. (GR)

  11. Compressed Sensing Based Interior Tomography

    Science.gov (United States)

    Yu, Hengyong; Wang, Ge

    2010-01-01

    While the conventional wisdom is that the interior problem does not have a unique solution, by analytic continuation we recently showed that the interior problem can be uniquely and stably solved if we have a known sub-region inside a region-of-interest (ROI). However, such a known sub-region does not always readily available, and it is even impossible to find in some cases. Based on the compressed sensing theory, here we prove that if an object under reconstruction is essentially piecewise constant, a local ROI can be exactly and stably reconstructed via the total variation minimization. Because many objects in CT applications can be approximately modeled as piecewise constant, our approach is practically useful and suggests a new research direction of interior tomography. To illustrate the merits of our finding, we develop an iterative interior reconstruction algorithm that minimizes the total variation of a reconstructed image, and evaluate the performance in numerical simulation. PMID:19369711

  12. The Value of Interior Design

    Science.gov (United States)

    1994-05-01

    example, integrating lighting ( technology ) with VDT (workflow) can help reduce glare and stress (eye fatigue). Facilitate Individuality. Interior...warn of a would’be intruder. Specialty Systems. The continuous advancement of lighting technology provides several creative options for individually

  13. Mirador - Earth Surface and Interior

    Data.gov (United States)

    National Aeronautics and Space Administration — Earth Science data access made simple. The goal of the Earth Surface and Interior focus area is to assess, mitigate and forecast the natural hazards that affect...

  14. Comparative Study of Elastic Network Model and Protein Contact Network for Protein Complexes: The Hemoglobin Case

    Directory of Open Access Journals (Sweden)

    Guang Hu

    2017-01-01

    Full Text Available The overall topology and interfacial interactions play key roles in understanding structural and functional principles of protein complexes. Elastic Network Model (ENM and Protein Contact Network (PCN are two widely used methods for high throughput investigation of structures and interactions within protein complexes. In this work, the comparative analysis of ENM and PCN relative to hemoglobin (Hb was taken as case study. We examine four types of structural and dynamical paradigms, namely, conformational change between different states of Hbs, modular analysis, allosteric mechanisms studies, and interface characterization of an Hb. The comparative study shows that ENM has an advantage in studying dynamical properties and protein-protein interfaces, while PCN is better for describing protein structures quantitatively both from local and from global levels. We suggest that the integration of ENM and PCN would give a potential but powerful tool in structural systems biology.

  15. Studies of Protein Solution Properties Using Osmotic Pressure Measurements

    Science.gov (United States)

    Agena, S.; Bogle, David; Pusey, Marc; Agena, S.

    1998-01-01

    Examination of the protein crystallization process involves investigation of the liquid and solid state and a protein's properties in these states. Liquid state studies such as protein self association in solution by light scattering methods or other methods have been used to examine a protein Is properties and therefore its crystallization process and conditions. Likewise can osmotic pressure data be used to examine protein properties and various published osmotic pressure studies were examined by us to correlate osmotic pressure to protein solution properties. The solution behavior of serum albumin, alpha - chymotrypsin, beta - lactoglobulin and ovalbumin was examined over a range of temperatures, pH values and different salt types and concentrations. Using virial expansion and a local composition model the non ideal solution behavior in form of the activity coefficients (thermodynamic) was described for the systems. This protein activity coefficient data was related to a protein's solubility behavior and this process and the results will be presented.

  16. The cell-based L-glutathione protection assays to study endocytosis and recycling of plasma membrane proteins.

    Science.gov (United States)

    Cihil, Kristine M; Swiatecka-Urban, Agnieszka

    2013-12-13

    Membrane trafficking involves transport of proteins from the plasma membrane to the cell interior (i.e. endocytosis) followed by trafficking to lysosomes for degradation or to the plasma membrane for recycling. The cell based L-glutathione protection assays can be used to study endocytosis and recycling of protein receptors, channels, transporters, and adhesion molecules localized at the cell surface. The endocytic assay requires labeling of cell surface proteins with a cell membrane impermeable biotin containing a disulfide bond and the N-hydroxysuccinimide (NHS) ester at 4 ºC - a temperature at which membrane trafficking does not occur. Endocytosis of biotinylated plasma membrane proteins is induced by incubation at 37 ºC. Next, the temperature is decreased again to 4 ºC to stop endocytic trafficking and the disulfide bond in biotin covalently attached to proteins that have remained at the plasma membrane is reduced with L-glutathione. At this point, only proteins that were endocytosed remain protected from L-glutathione and thus remain biotinylated. After cell lysis, biotinylated proteins are isolated with streptavidin agarose, eluted from agarose, and the biotinylated protein of interest is detected by western blotting. During the recycling assay, after biotinylation cells are incubated at 37 °C to load endocytic vesicles with biotinylated proteins and the disulfide bond in biotin covalently attached to proteins remaining at the plasma membrane is reduced with L-glutathione at 4 ºC as in the endocytic assay. Next, cells are incubated again at 37 °C to allow biotinylated proteins from endocytic vesicles to recycle to the plasma membrane. Cells are then incubated at 4 ºC, and the disulfide bond in biotin attached to proteins that recycled to the plasma membranes is reduced with L-glutathione. The biotinylated proteins protected from L-glutathione are those that did not recycle to the plasma membrane.

  17. Structural Basis of Protein Oxidation Resistance: A Lysozyme Study

    OpenAIRE

    Girod, Marion; Enjalbert, Quentin; Brunet, Claire; Antoine, Rodolphe; Lemoine, Jérôme; Lukac, Iva; Radman, Miroslav; Krisko, Anita; Dugourd, Philippe

    2014-01-01

    Accumulation of oxidative damage in proteins correlates with aging since it can cause irreversible and progressive degeneration of almost all cellular functions. Apparently, native protein structures have evolved intrinsic resistance to oxidation since perfectly folded proteins are, by large most robust. Here we explore the structural basis of protein resistance to radiation-induced oxidation using chicken egg white lysozyme in the native and misfolded form. We study the differential resistan...

  18. Structure and Protein-Protein Interaction Studies on Chlamydia trachomatis Protein CT670 (YscO Homolog)

    Energy Technology Data Exchange (ETDEWEB)

    Lorenzini, Emily; Singer, Alexander; Singh, Bhag; Lam, Robert; Skarina, Tatiana; Chirgadze, Nickolay Y.; Savchenko, Alexei; Gupta, Radhey S. (Toronto); (McMaster U.); (OCI)

    2010-07-28

    Comparative genomic studies have identified many proteins that are found only in various Chlamydiae species and exhibit no significant sequence similarity to any protein in organisms that do not belong to this group. The CT670 protein of Chlamydia trachomatis is one of the proteins whose genes are in one of the type III secretion gene clusters but whose cellular functions are not known. CT670 shares several characteristics with the YscO protein of Yersinia pestis, including the neighboring genes, size, charge, and secondary structure, but the structures and/or functions of these proteins remain to be determined. Although a BLAST search with CT670 did not identify YscO as a related protein, our analysis indicated that these two proteins exhibit significant sequence similarity. In this paper, we report that the CT670 crystal, solved at a resolution of 2 {angstrom}, consists of a single coiled coil containing just two long helices. Gel filtration and analytical ultracentrifugation studies showed that in solution CT670 exists in both monomeric and dimeric forms and that the monomer predominates at lower protein concentrations. We examined the interaction of CT670 with many type III secretion system-related proteins (viz., CT091, CT665, CT666, CT667, CT668, CT669, CT671, CT672, and CT673) by performing bacterial two-hybrid assays. In these experiments, CT670 was found to interact only with the CT671 protein (YscP homolog), whose gene is immediately downstream of ct670. A specific interaction between CT670 and CT671 was also observed when affinity chromatography pull-down experiments were performed. These results suggest that CT670 and CT671 are putative homologs of the YcoO and YscP proteins, respectively, and that they likely form a chaperone-effector pair.

  19. A SIMPLE FLUORESCENT LABELING METHOD FOR STUDIES OF PROTEIN OXIDATION, PROTEIN MODIFICATION, AND PROTEOLYSIS

    Science.gov (United States)

    Pickering, Andrew. M.; Davies, Kelvin. J. A.

    2014-01-01

    Proteins are sensitive to oxidation, and oxidized proteins are excellent substrates for degradation by proteolytic enzymes such as the Proteasome and the mitochondrial Lon protease. Protein labeling is required for studies of protein turnover. Unfortunately, most labeling techniques involve 3H or 14C methylation which is expensive, exposes researchers to radioactivity, generates large amounts of radioactive waste, and allows only single-point assays because samples require acid-precipitation. Alternative labeling methods, have largely proven unsuitable, either because the probe itself is modified by the oxidant(s) being studied, or because the alternative labeling techniques are too complex or too costly for routine use. What is needed is a simple, quick, and cheap labeling technique that uses a non-radioactive marker, that binds strongly to proteins, is resistant to oxidative modification, and emits a strong signal. We have devised a new reductive method for labeling free carboxyl groups of proteins with the small fluorophore 7-amino-4-methycoumarin (AMC). When bound to target proteins, AMC fluoresces very weakly but when AMC is released by proteinases, proteases, or peptidases, it fluoresces strongly. Thus, without acid-precipitation, the proteolysis of any target protein can be studied continuously, in multiwell plates. In direct comparisons, 3H-labeled proteins and AMC-labeled proteins exhibited essentially identical degradation patterns during incubation with trypsin, cell extracts, and purified proteasome. AMC-labeled proteins are well-suited to study increased proteolytic susceptibility following protein modification, since the AMC-protein bond is resistant to oxidizing agents such as hydrogen peroxide and peroxynitrite, and is stable over time and to extremes of pH, temperature (even boiling), freeze-thawing, mercaptoethanol, and methanol. PMID:21988844

  20. Studying host cell protein interactions with monoclonal antibodies using high throughput protein A chromatography.

    Science.gov (United States)

    Sisodiya, Vikram N; Lequieu, Joshua; Rodriguez, Maricel; McDonald, Paul; Lazzareschi, Kathlyn P

    2012-10-01

    Protein A chromatography is typically used as the initial capture step in the purification of monoclonal antibodies produced in Chinese hamster ovary (CHO) cells. Although exploiting an affinity interaction for purification, the level of host cell proteins in the protein A eluent varies significantly with different feedstocks. Using a batch binding chromatography method, we performed a controlled study to assess host cell protein clearance across both MabSelect Sure and Prosep vA resins. We individually spiked 21 purified antibodies into null cell culture fluid generated with a non-producing cell line, creating mock cell culture fluids for each antibody with an identical composition of host cell proteins and antibody concentration. We demonstrated that antibody-host cell protein interactions are primarily responsible for the variable levels of host cell proteins in the protein A eluent for both resins when antibody is present. Using the additives guanidine HCl and sodium chloride, we demonstrated that antibody-host cell protein interactions may be disrupted, reducing the level of host cell proteins present after purification on both resins. The reduction in the level of host cell proteins differed between antibodies suggesting that the interaction likely varies between individual antibodies but encompasses both an electrostatic and hydrophobic component. Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  1. Bootstrap method of interior-branch test for phylogenetic trees.

    Science.gov (United States)

    Sitnikova, T

    1996-04-01

    Statistical properties of the bootstrap test of interior branch lengths of phylogenetic trees have been studied and compared with those of the standard interior-branch test in computer simulations. Examination of the properties of the tests under the null hypothesis showed that both tests for an interior branch of a predetermined topology are quite reliable when the distribution of the branch length estimate approaches a normal distribution. Unlike the standard interior-branch test, the bootstrap test appears to retain this property even when the substitution rate varies among sites. In this case, the distribution of the branch length estimate deviates from a normal distribution, and the standard interior-branch test gives conservative confidence probability values. A simple correction method was developed for both interior-branch tests to be applied for testing the reliability of tree topologies estimated from sequence data. This correction for the standard interior-branch test appears to be as effective as that obtained in our previous study, though it is much simpler. The bootstrap and standard interior-branch tests for estimated topologies become conservative as the number of sequence groups in a star-like tree increases.

  2. Preservation of Art Style in Interior and Architecture Cultural Heritage Buildings: A Case Study in Hotel Kartika Wijaya & Hotel Niagara Malang

    OpenAIRE

    Sri Rachmayanti; Christianto R.; Anak Agung Ayu Wulandari

    2016-01-01

    Kartika Wijaya Hotel and Niagara Hotel-Malang are two heritage buildings, which are well managed to preserve their historical building that, has been established since 1891. We can find good harmony and variety in interior elements and design styles, such as Colonial style, Art Noveau and Art Deco style. The purpose of documentating this heritage building that has different design styles is for those who needed. The data will be classified according to the period of the development of the bui...

  3. Preservation of Art Style in Interior and Architecture Cultural Heritage Buildings a Case Study: Hotel Kartika Wijaya & Hotel Niagara in Malang City

    OpenAIRE

    Sri Rachmayanti; Christianto Roesli; Anak Agung Ayu Wulandari

    2016-01-01

    Kartika Wijaya Hotel and Niagara Hotel-Malang are two heritage buildings, which are well managed to preserve their historical building that, has been established since 1891. We can find good harmony and variety in interior elements and design styles, such as Colonial style, Art Noveau and Art Deco style. The purpose of documentating this heritage building that has different design styles is for those who needed. The data will be classified according to the period of the development of the bui...

  4. Fluorescence Studies of Protein Crystallization Interactions

    Science.gov (United States)

    Pusey, Marc L.; Smith, Lori; Forsythe, Elizabeth

    1999-01-01

    We are investigating protein-protein interactions in under- and over-saturated crystallization solution conditions using fluorescence methods. The use of fluorescence requires fluorescent derivatives where the probe does not markedly affect the crystal packing. A number of chicken egg white lysozyme (CEWL) derivatives have been prepared, with the probes covalently attached to one of two different sites on the protein molecule; the side chain carboxyl of ASP 101, within the active site cleft, and the N-terminal amine. The ASP 101 derivatives crystallize while the N-terminal amine derivatives do not. However, the N-terminal amine is part of the contact region between adjacent 43 helix chains, and blocking this site does would not interfere with formation of these structures in solution. Preliminary FRET data have been obtained at pH 4.6, 0.1M NaAc buffer, at 5 and 7% NaCl, 4 C, using the N-terminal bound pyrene acetic acid (PAA, Ex 340 nm, Em 376 nm) and ASP 101 bound Lucifer Yellow (LY, Ex 425 nm, Em 525 nm) probe combination. The corresponding Csat values are 0.471 and 0.362 mg/ml (approximately 3.3 and approximately 2.5 x 10 (exp 5) M respectively), and all experiments were carried out at approximately Csat or lower total protein concentration. The data at both salt concentrations show a consistent trend of decreasing fluorescence yield of the donor species (PAA) with increasing total protein concentration. This decrease is apparently more pronounced at 7% NaCl, consistent with the expected increased intermolecular interactions at higher salt concentrations (reflected in the lower solubility). The estimated average distance between protein molecules at 5 x 10 (exp 6) M is approximately 70 nm, well beyond the range where any FRET can be expected. The calculated RO, where 50% of the donor energy is transferred to the acceptor, for the PAA-CEWL * LY-CEWL system is 3.28 nm, based upon a PAA-CEWL quantum efficiency of 0.41.

  5. Interior Design Factors in Library Facilities.

    Science.gov (United States)

    Jackson, Patricia Ann

    When planning the interior of a library facility, the planning team of librarian, library consultant, architect, and interior design consultant must focus attention on the basic principles of interior design and the psychological needs of the user. Colors for an interior should be selected with careful regard to space, light, and emotional and…

  6. VARIATIONAL PRINCIPLE FOR PLANETARY INTERIORS

    International Nuclear Information System (INIS)

    Zeng, Li; Jacobsen, Stein B.

    2016-01-01

    In the past few years, the number of confirmed planets has grown above 2000. It is clear that they represent a diversity of structures not seen in our own solar system. In addition to very detailed interior modeling, it is valuable to have a simple analytical framework for describing planetary structures. The variational principle is a fundamental principle in physics, entailing that a physical system follows the trajectory, which minimizes its action. It is alternative to the differential equation formulation of a physical system. Applying the variational principle to the planetary interior can beautifully summarize the set of differential equations into one, which provides us some insight into the problem. From this principle, a universal mass–radius relation, an estimate of the error propagation from the equation of state to the mass–radius relation, and a form of the virial theorem applicable to planetary interiors are derived.

  7. Functional textiles in hospital interiors

    DEFF Research Database (Denmark)

    Mogensen, Jeppe

    This PhD thesis explores the possibilities and design qualities of using functional textiles in the interior of hospital environments, and is the result of a three years collaboration between Aalborg University, Department of Civil Engineering, and VIA University College, VIA Design. The project...... that the physical environments affect the patients’ level of stress and influence their process of recovery and healing. However, although research in this field of hospital design has increased substantially in recent years, knowledge on the use of new materials and textiles in hospital interiors is still rather...... limited. Concerned with the design potentials of using textiles in hospital interiors, the purpose of the PhD project has been to explore the possibilities and design qualities of using these materials in hospital design. Relating to both technical and aesthetic aspects of using functional textiles...

  8. Contemporary NMR Studies of Protein Electrostatics.

    Science.gov (United States)

    Hass, Mathias A S; Mulder, Frans A A

    2015-01-01

    Electrostatics play an important role in many aspects of protein chemistry. However, the accurate determination of side chain proton affinity in proteins by experiment and theory remains challenging. In recent years the field of nuclear magnetic resonance spectroscopy has advanced the way that protonation states are measured, allowing researchers to examine electrostatic interactions at an unprecedented level of detail and accuracy. Experiments are now in place that follow pH-dependent (13)C and (15)N chemical shifts as spatially close as possible to the sites of protonation, allowing all titratable amino acid side chains to be probed sequence specifically. The strong and telling response of carefully selected reporter nuclei allows individual titration events to be monitored. At the same time, improved frameworks allow researchers to model multiple coupled protonation equilibria and to identify the underlying pH-dependent contributions to the chemical shifts.

  9. Interior design for passive solar homes

    Science.gov (United States)

    Breen, J. C.

    1981-07-01

    The increasing emphasis on refinement of passive solar systems brought recognition to interior design as an integral part of passive solar architecture. Interior design can be used as a finetuning tool minimizing many of the problems associated with passive solar energy use in residential buildings. In addition, treatment of interior space in solar model homes may be a prime factor in determining sales success. A new style of interior design is evolving in response to changes in building from incorporating passive solar design features. The psychology behind passive solar architecture is reflected in interiors, and selection of interior components increasingly depends on the functional suitably of various interior elements.

  10. Interior design for passive solar homes

    Energy Technology Data Exchange (ETDEWEB)

    Breen, J. C.

    1981-07-01

    The increasing emphasis on refinement of passive solar systems has brought recognition to interior design as an integral part of passive solar architecture. Interior design can be used as a finetuning tool minimizing many of the problems associated with passive solar energy use in residential buildings. In addition, treatment of interior space in solar model homes may be a prime factor in determining sales success. A new style of interior design is evolving in response to changes in building form incorporating passive solar design features. The psychology behind passive solar architecture is reflected in interiors, and selection of interior components increasingly depends on the functional suitability of various interior elements.

  11. Dewatering tailings impoundments : interior drains

    International Nuclear Information System (INIS)

    Charlie, W.A.; Doehring, D.O.; Durnford, D.S.

    1984-01-01

    For the design of a new uranium tailings impoundment in the western United States, it was proposed that an interior drainage system be considered to economically and reliably minimize potential short- and long-term environmental impacts. The objectives were to decrease the effective hydraulic head on the clay liner, to dewater and stabilize the tailings, and to increase the amount of water recycled to the mill. In addition, desaturation of the impoundment would induce capillary pressure (negative porewater pressure), further reducing the potential movement of dissolved pollutants. This paper presents saturated and unsaturated seepage principles and reviews the concept, criteria and design of the various interior drainage systems considered

  12. Lake Habitat and Fish Surveys on Interior Alaska National Wildlife Refuges, 1984–1986

    Data.gov (United States)

    Department of the Interior — A large-scale lake study on Interior Alaska National Wildlife Refuges (NWR) was undertaken from 1984–1986. Six NWRs were surveyed (Innoko, Kanuti, Koyukuk, Nowitna,...

  13. Using Superfolder Green Fluorescent Protein for Periplasmic Protein Localization Studies

    OpenAIRE

    Dinh, Thuy; Bernhardt, Thomas G.

    2011-01-01

    Studies investigating the subcellular localization of periplasmic proteins have been hampered by problems with the export of green fluorescent protein (GFP). Here we show that a superfolding variant of GFP (sfGFP) is fluorescent following Sec-mediated transport and works best when the cotranslational branch of the pathway is employed.

  14. Small world network strategies for studying protein structures and binding.

    Science.gov (United States)

    Taylor, Neil R

    2013-01-01

    Small world network concepts provide many new opportunities to investigate the complex three dimensional structures of protein molecules. This mini-review explores the published literature on using small-world network approaches to study protein structure, with emphasis on the different combinations of descriptors that have been tested, on studies involving ligand binding in protein-ligand complexes, and on protein-protein complexes. The benefits and success of small world network approaches, which change the focus from specific interactions to the local environment, even to non-local phenomenon, are described. The purpose is to show the different ways that small world network concepts have been used for building new computational models for studying protein structure and function, and for extending and improving existing modelling approaches.

  15. Physics of the Earth’s Interior

    OpenAIRE

    Romanowicz, Barbara; Corvol, Pierre; Romanowicz, Barbara

    2013-01-01

    Earthquakes, tsunamis, volcanic eruptions: the extent of certain recent natural disasters and their dramatic consequences have reminded us of the power of terrestrial phenomena and of the need for scientific research to understand the Earth’s dynamics more fully. Over the last twenty years the study of the Earth’s interior has witnessed a real revolution, owing in particular to the development of increasingly sophisticated seismic tomography techniques and the powerful computations made possi...

  16. Process design (exterior – interior design)

    OpenAIRE

    Sandeva, Vaska; Despot, Katerina

    2013-01-01

    The design is a complex process of spatial organization and creative problem object. It switched to the study of complex natural conditions (analysis and evaluation) and the development of compositional solution structure of the object. Construction and shaping of all buildings whether it is exterior or interior, be it street, Square apartment building, park or greater forest massif, public facility (administrative buildings, hospitals, schools, galleries etc.), residential object (garsion...

  17. Can microbes compete with cows for sustainable protein production - A feasibility study on high quality protein

    DEFF Research Database (Denmark)

    Vestergaard, Mike; Chan, Siu Hung Joshua; Jensen, Peter Ruhdal

    2016-01-01

    An increasing population and their increased demand for high-protein diets will require dramatic changes in the food industry, as limited resources and environmental issues will make animal derived foods and proteins, gradually more unsustainable to produce. To explore alternatives to animal...... derived proteins, an economic model was built around the genome-scale metabolic network of E. coli to study the feasibility of recombinant protein production as a food source. Using a novel model, we predicted which microbial production strategies are optimal for economic return, by capturing the tradeoff...... between the market prices of substrates, product output and the efficiency of microbial production. A case study with the food protein, Bovine Alpha Lactalbumin was made to evaluate the upstream economic feasibilities. Simulations with different substrate profiles at maximum productivity were used...

  18. Fourth Aircraft Interior Noise Workshop

    Science.gov (United States)

    1992-07-01

    distributions of tha A-weighted interior noise for tha four investigated tunvd diaper arrangements tor a simulated piopallei noisa with 10SO RPM are...Schiphol, The Netherlands 5) Matr.i Sap Imagerie at Informatique, St. Quentin en Yvelines, Franc* C) Rason Systea A/S, Slangarup, Denmark 7

  19. Crash simulations for interior design

    NARCIS (Netherlands)

    Poeze, E.; Slaats, P.M.A.

    1996-01-01

    With the increasing number of compact cars, safety aspects becomes increasingly important for interior designs. The smaller dimensions of these cars do not only decrease the car mass, but also the energy absorption length, resulting in a more severe crash pulse. As a consequence, the inertia loading

  20. Interior Design: Teacher's Instructional Guide.

    Science.gov (United States)

    Hays, Tricia

    This teacher's instructional guide, which is part of a family and consumer sciences education series focusing on a broad range of employment opportunities, is intended to assist teachers responsible for teaching one- and two-year interior design programs for Texas high school students. The following are among the items included: (1) introductory…

  1. Interior Design Trends in Libraries.

    Science.gov (United States)

    Sager, Don, Ed.

    2000-01-01

    Four contributing authors discuss perspectives on current trends in library interior design. Articles include: "Trends in Library Furnishings: A Manufacturer's Perspective" (Andrea Johnson); "Libraries, Architecture, and Light: The Architect's Perspective" (Rick McCarthy); "The Library Administrator's Perspective" (Chadwick Raymond); and "The…

  2. Systematic Protein Prioritization for Targeted Proteomics Studies through Literature Mining.

    Science.gov (United States)

    Yu, Kun-Hsing; Lee, Tsung-Lu; Wang, Chi-Shiang; Chen, Yu-Ju; Ré, Christopher; Kou, Samuel C; Chiang, Jung-Hsien; Kohane, Isaac S; Snyder, Michael

    2018-03-05

    There are more than 3.7 million published articles on the biological functions or disease implications of proteins, constituting an important resource of proteomics knowledge. However, it is difficult to summarize the millions of proteomics findings in the literature manually and quantify their relevance to the biology and diseases of interest. In this study, we developed a fully-automated bioinformatics framework to identify and prioritize proteins associated with any biological entity. We used the 22 targeted areas of the Biology/Disease-driven (B/D)-Human Proteome Project (HPP) as examples, prioritized the relevant proteins through their Protein Universal Reference Publication-Originated Search Engine (PURPOSE) scores, validated the relevance of the score by comparing the protein prioritization results with a curated database, computed the scores of proteins across the topics of B/D-HPP, and characterized the top proteins in the common model organisms. We further extended the bioinformatics workflow to identify the relevant proteins in all organ systems and human diseases and deployed a cloud-based tool to prioritize proteins related to any custom search terms in real time. Our tool can facilitate the prioritization of proteins for any organ system or disease of interest and can contribute to the development of targeted proteomic studies for precision medicine. Our cloud-based real-time search tool is freely available for academic and non-profit use at http://rebrand.ly/proteinpurpose.

  3. Protein folding and protein metallocluster studies using synchrotron small angler X-ray scattering

    Energy Technology Data Exchange (ETDEWEB)

    Eliezer, D.

    1994-06-01

    Proteins, biological macromolecules composed of amino-acid building blocks, possess unique three dimensional shapes or conformations which are intimately related to their biological function. All of the information necessary to determine this conformation is stored in a protein`s amino acid sequence. The problem of understanding the process by which nature maps protein amino-acid sequences to three-dimensional conformations is known as the protein folding problem, and is one of the central unsolved problems in biophysics today. The possible applications of a solution are broad, ranging from the elucidation of thousands of protein structures to the rational modification and design of protein-based drugs. The scattering of X-rays by matter has long been useful as a tool for the characterization of physical properties of materials, including biological samples. The high photon flux available at synchrotron X-ray sources allows for the measurement of scattering cross-sections of dilute and/or disordered samples. Such measurements do not yield the detailed geometrical information available from crystalline samples, but do allow for lower resolution studies of dynamical processes not observable in the crystalline state. The main focus of the work described here has been the study of the protein folding process using time-resolved small-angle x-ray scattering measurements. The original intention was to observe the decrease in overall size which must accompany the folding of a protein from an extended conformation to its compact native state. Although this process proved too fast for the current time-resolution of the technique, upper bounds were set on the probable compaction times of several small proteins. In addition, an interesting and unexpected process was detected, in which the folding protein passes through an intermediate state which shows a tendency to associate. This state is proposed to be a kinetic molten globule folding intermediate.

  4. Electromagnetic sounding of the Earth's interior

    CERN Document Server

    Spichak, Viacheslav V

    2015-01-01

    Electromagnetic Sounding of the Earth's Interior 2nd edition provides a comprehensive up-to-date collection of contributions, covering methodological, computational and practical aspects of Electromagnetic sounding of the Earth by different techniques at global, regional and local scales. Moreover, it contains new developments such as the concept of self-consistent tasks of geophysics and , 3-D interpretation of the TEM sounding which, so far, have not all been covered by one book. Electromagnetic Sounding of the Earth's Interior 2nd edition consists of three parts: I- EM sounding methods, II- Forward modelling and inversion techniques, and III - Data processing, analysis, modelling and interpretation. The new edition includes brand new chapters on Pulse and frequency electromagnetic sounding for hydrocarbon offshore exploration. Additionally all other chapters have been extensively updated to include new developments. Presents recently developed methodological findings of the earth's study, including seism...

  5. Elemen Pembentuk Makna pada Sebuah Interior Arsitektur

    Directory of Open Access Journals (Sweden)

    Dila Hendrassukma

    2012-10-01

    Full Text Available Along with the increasing needs of the community, also increasing the need for space to accommodated those needs. With limited space available nowadays, it is not uncommon to change the old buildings’ function as a place to meet the social growing need of the space. However, it is must be remembered by architects and interior architects when changing the functions of a space that the old space has its own histories and particular meaning to people who had ever occupied it. Those histories and meanings should be included in the creation of the new function. Article gives and describes elements that need to be known in order to understand the sense of a space, such as drawing plans, scale, proportion, movement, transition and access that embodied in the architecture and interior space. Qualitative methods by literature study is used in the making of this article.. 

  6. Membrane Protein Production in Lactococcus lactis for Functional Studies.

    Science.gov (United States)

    Seigneurin-Berny, Daphne; King, Martin S; Sautron, Emiline; Moyet, Lucas; Catty, Patrice; André, François; Rolland, Norbert; Kunji, Edmund R S; Frelet-Barrand, Annie

    2016-01-01

    Due to their unique properties, expression and study of membrane proteins in heterologous systems remains difficult. Among the bacterial systems available, the Gram-positive lactic bacterium, Lactococcus lactis, traditionally used in food fermentations, is nowadays widely used for large-scale production and functional characterization of bacterial and eukaryotic membrane proteins. The aim of this chapter is to describe the different possibilities for the functional characterization of peripheral or intrinsic membrane proteins expressed in Lactococcus lactis.

  7. Neutron scattering studies on protein dynamics using the human myelin peripheral membrane protein P2

    Science.gov (United States)

    Laulumaa, Saara; Kursula, Petri; Natali, Francesca

    2015-01-01

    Myelin is a multilayered proteolipid membrane structure surrounding selected axons in the vertebrate nervous system, which allows the rapid saltatory conduction of nerve impulses. Deficits in myelin formation and maintenance may lead to chronic neurological disease. P2 is an abundant myelin protein from peripheral nerves, binding between two apposing lipid bilayers. We studied the dynamics of the human myelin protein P2 and its mutated P38G variant in hydrated powders using elastic incoherent neutron scattering. The local harmonic vibrations at low temperatures were very similar for both samples, but the mutant protein had increased flexibility and softness close to physiological temperatures. The results indicate that a drastic mutation of proline to glycine at a functional site can affect protein dynamics, and in the case of P2, they may explain functional differences between the two proteins.

  8. Protein folding and protein metallocluster studies using synchrotron small angler X-ray scattering

    International Nuclear Information System (INIS)

    Eliezer, D.

    1994-06-01

    Proteins, biological macromolecules composed of amino-acid building blocks, possess unique three dimensional shapes or conformations which are intimately related to their biological function. All of the information necessary to determine this conformation is stored in a protein's amino acid sequence. The problem of understanding the process by which nature maps protein amino-acid sequences to three-dimensional conformations is known as the protein folding problem, and is one of the central unsolved problems in biophysics today. The possible applications of a solution are broad, ranging from the elucidation of thousands of protein structures to the rational modification and design of protein-based drugs. The scattering of X-rays by matter has long been useful as a tool for the characterization of physical properties of materials, including biological samples. The high photon flux available at synchrotron X-ray sources allows for the measurement of scattering cross-sections of dilute and/or disordered samples. Such measurements do not yield the detailed geometrical information available from crystalline samples, but do allow for lower resolution studies of dynamical processes not observable in the crystalline state. The main focus of the work described here has been the study of the protein folding process using time-resolved small-angle x-ray scattering measurements. The original intention was to observe the decrease in overall size which must accompany the folding of a protein from an extended conformation to its compact native state. Although this process proved too fast for the current time-resolution of the technique, upper bounds were set on the probable compaction times of several small proteins. In addition, an interesting and unexpected process was detected, in which the folding protein passes through an intermediate state which shows a tendency to associate. This state is proposed to be a kinetic molten globule folding intermediate

  9. Artificial membranes for membrane protein purification, functionality and structure studies.

    Science.gov (United States)

    Parmar, Mayuriben J; Lousa, Carine De Marcos; Muench, Stephen P; Goldman, Adrian; Postis, Vincent L G

    2016-06-15

    Membrane proteins represent one of the most important targets for pharmaceutical companies. Unfortunately, technical limitations have long been a major hindrance in our understanding of the function and structure of such proteins. Recent years have seen the refinement of classical approaches and the emergence of new technologies that have resulted in a significant step forward in the field of membrane protein research. This review summarizes some of the current techniques used for studying membrane proteins, with overall advantages and drawbacks for each method. © 2016 The Author(s). published by Portland Press Limited on behalf of the Biochemical Society.

  10. High-Sensitivity Rheo-NMR Spectroscopy for Protein Studies.

    Science.gov (United States)

    Morimoto, Daichi; Walinda, Erik; Iwakawa, Naoto; Nishizawa, Mayu; Kawata, Yasushi; Yamamoto, Akihiko; Shirakawa, Masahiro; Scheler, Ulrich; Sugase, Kenji

    2017-07-18

    Shear stress can induce structural deformation of proteins, which might result in aggregate formation. Rheo-NMR spectroscopy has the potential to monitor structural changes in proteins under shear stress at the atomic level; however, existing Rheo-NMR methodologies have insufficient sensitivity to probe protein structure and dynamics. Here we present a simple and versatile approach to Rheo-NMR, which maximizes sensitivity by using a spectrometer equipped with a cryogenic probe. As a result, the sensitivity of the instrument ranks highest among the Rheo-NMR spectrometers reported so far. We demonstrate that the newly developed Rheo-NMR instrument can acquire high-quality relaxation data for a protein under shear stress and can trace structural changes in a protein during fibril formation in real time. The described approach will facilitate rheological studies on protein structural deformation, thereby aiding a physical understanding of shear-induced amyloid fibril formation.

  11. Studying Membrane Protein Structure and Function Using Nanodiscs

    DEFF Research Database (Denmark)

    Huda, Pie

    The structure and dynamic of membrane proteins can provide valuable information about general functions, diseases and effects of various drugs. Studying membrane proteins are a challenge as an amphiphilic environment is necessary to stabilise the protein in a functionally and structurally relevant...... form. This is most typically achieved through the use of detergent based reconstitution systems. However, time and again such systems fail to provide a suitable environment causing aggregation and inactivation. Nanodiscs are self-assembled lipoproteins containing two membrane scaffold proteins...... and a lipid bilayer in defined nanometer size, which can act as a stabiliser for membrane proteins. This enables both functional and structural investigation of membrane proteins in a detergent free environment which is closer to the native situation. Understanding the self-assembly of nanodiscs is important...

  12. Validation of protein carbonyl measurement: A multi-centre study

    Directory of Open Access Journals (Sweden)

    Edyta Augustyniak

    2015-04-01

    Full Text Available Protein carbonyls are widely analysed as a measure of protein oxidation. Several different methods exist for their determination. A previous study had described orders of magnitude variance that existed when protein carbonyls were analysed in a single laboratory by ELISA using different commercial kits. We have further explored the potential causes of variance in carbonyl analysis in a ring study. A soluble protein fraction was prepared from rat liver and exposed to 0, 5 and 15 min of UV irradiation. Lyophilised preparations were distributed to six different laboratories that routinely undertook protein carbonyl analysis across Europe. ELISA and Western blotting techniques detected an increase in protein carbonyl formation between 0 and 5 min of UV irradiation irrespective of method used. After irradiation for 15 min, less oxidation was detected by half of the laboratories than after 5 min irradiation. Three of the four ELISA carbonyl results fell within 95% confidence intervals. Likely errors in calculating absolute carbonyl values may be attributed to differences in standardisation. Out of up to 88 proteins identified as containing carbonyl groups after tryptic cleavage of irradiated and control liver proteins, only seven were common in all three liver preparations. Lysine and arginine residues modified by carbonyls are likely to be resistant to tryptic proteolysis. Use of a cocktail of proteases may increase the recovery of oxidised peptides. In conclusion, standardisation is critical for carbonyl analysis and heavily oxidised proteins may not be effectively analysed by any existing technique.

  13. Virtual Reality as Innovative Approach to the Interior Designing

    Science.gov (United States)

    Kaleja, Pavol; Kozlovská, Mária

    2017-06-01

    We can observe significant potential of information and communication technologies (ICT) in interior designing field, by development of software and hardware virtual reality tools. Using ICT tools offer realistic perception of proposal in its initial idea (the study). A group of real-time visualization, supported by hardware tools like Oculus Rift HTC Vive, provides free walkthrough and movement in virtual interior with the possibility of virtual designing. By improving of ICT software tools for designing in virtual reality we can achieve still more realistic virtual environment. The contribution presented proposal of an innovative approach of interior designing in virtual reality, using the latest software and hardware ICT virtual reality technologies

  14. In silico study of interaction between rice proteins enhanced disease ...

    Indian Academy of Sciences (India)

    2012-06-25

    Jun 25, 2012 ... a dimeric protein complex, which, similar to that in Arabidopsis, is perhaps also important for triggering the salicylic acid signalling pathway in plants. [Singh I and Shah K 2012 In silico study of interaction between rice proteins enhanced disease susceptibility 1 and phytoalexin deficient 4, the regulators of ...

  15. Fungal protein from corn waste effluents : a model study

    NARCIS (Netherlands)

    Schellart, J.A.

    1975-01-01

    The purpose of this investigation was to study the microbiological aspects of the production of microbial protein ('single cell protein'; SCP) from corn waste effluents with simultaneous reduction of the COD of these effluents.

    For practical reasons the corn waste water itself was

  16. Protein Engineering: Case Studies of Commercialized Engineered Products

    Science.gov (United States)

    Walsh, Gary

    2007-01-01

    Programs in biochemistry invariably encompass the principles of protein engineering. Students often display increased understanding and enthusiasm when theoretical concepts are underpinned by practical example. Herein are presented five case studies, each focusing upon a commercial protein product engineered to enhance its application-relevant…

  17. Vibrational spectroscopic study of sulphated silk proteins

    Science.gov (United States)

    Monti, P.; Freddi, G.; Arosio, C.; Tsukada, M.; Arai, T.; Taddei, P.

    2007-05-01

    Degummed Bombyx mori ( B. m.) silk fibroin fabric and mutant naked pupa cocoons (Nd-s) consisting of almost pure silk sericin were treated with chlorosulphonic acid in pyridine and investigated by FT-IR and FT-Raman spectroscopies. Untreated silk fibroin and sericin displayed typical spectral features due to characteristic amino acid composition and molecular conformation (prevailing β-sheet with a less ordered structure in sericin). Upon sulphation, the degree of molecular disorder increased in both proteins and new bands appeared. The IR bands at 1049 and 1014 cm -1 were attributed to vibrations of sulphate salts and that at 1385 cm -1 to the νasSO 2 mode of organic covalent sulphates. In the 1300-1180 cm -1 range various contributions of alkyl and aryl sulphate salts, sulphonamides, sulphoamines and organic covalent sulphates, fell. Fibroin covalently bound sulphate groups through the hydroxyl groups of tyrosine and serine, while sericin through the hydroxyl groups of serine, since the δOH vibrations at 1399 cm -1 in IR and at 1408 cm -1 in Raman disappeared almost completely. Finally, the increase of the I850/ I830 intensity ratio of Raman tyrosine doublet in fibroin suggested a change towards a more exposed state of tyrosine residues, in good agreement with the more disordered conformation taken upon sulphation.

  18. Automated High Throughput Protein Crystallization Screening at Nanoliter Scale and Protein Structural Study on Lactate Dehydrogenase

    Energy Technology Data Exchange (ETDEWEB)

    Li, Fenglei [Iowa State Univ., Ames, IA (United States)

    2006-08-09

    The purposes of our research were: (1) To develop an economical, easy to use, automated, high throughput system for large scale protein crystallization screening. (2) To develop a new protein crystallization method with high screening efficiency, low protein consumption and complete compatibility with high throughput screening system. (3) To determine the structure of lactate dehydrogenase complexed with NADH by x-ray protein crystallography to study its inherent structural properties. Firstly, we demonstrated large scale protein crystallization screening can be performed in a high throughput manner with low cost, easy operation. The overall system integrates liquid dispensing, crystallization and detection and serves as a whole solution to protein crystallization screening. The system can dispense protein and multiple different precipitants in nanoliter scale and in parallel. A new detection scheme, native fluorescence, has been developed in this system to form a two-detector system with a visible light detector for detecting protein crystallization screening results. This detection scheme has capability of eliminating common false positives by distinguishing protein crystals from inorganic crystals in a high throughput and non-destructive manner. The entire system from liquid dispensing, crystallization to crystal detection is essentially parallel, high throughput and compatible with automation. The system was successfully demonstrated by lysozyme crystallization screening. Secondly, we developed a new crystallization method with high screening efficiency, low protein consumption and compatibility with automation and high throughput. In this crystallization method, a gas permeable membrane is employed to achieve the gentle evaporation required by protein crystallization. Protein consumption is significantly reduced to nanoliter scale for each condition and thus permits exploring more conditions in a phase diagram for given amount of protein. In addition

  19. Motivated Proteins: A web application for studying small three-dimensional protein motifs

    Directory of Open Access Journals (Sweden)

    Milner-White E James

    2009-02-01

    Full Text Available Abstract Background Small loop-shaped motifs are common constituents of the three-dimensional structure of proteins. Typically they comprise between three and seven amino acid residues, and are defined by a combination of dihedral angles and hydrogen bonding partners. The most abundant of these are αβ-motifs, asx-motifs, asx-turns, β-bulges, β-bulge loops, β-turns, nests, niches, Schellmann loops, ST-motifs, ST-staples and ST-turns. We have constructed a database of such motifs from a range of high-quality protein structures and built a web application as a visual interface to this. Description The web application, Motivated Proteins, provides access to these 12 motifs (with 48 sub-categories in a database of over 400 representative proteins. Queries can be made for specific categories or sub-categories of motif, motifs in the vicinity of ligands, motifs which include part of an enzyme active site, overlapping motifs, or motifs which include a particular amino acid sequence. Individual proteins can be specified, or, where appropriate, motifs for all proteins listed. The results of queries are presented in textual form as an (XHTML table, and may be saved as parsable plain text or XML. Motifs can be viewed and manipulated either individually or in the context of the protein in the Jmol applet structural viewer. Cartoons of the motifs imposed on a linear representation of protein secondary structure are also provided. Summary information for the motifs is available, as are histograms of amino acid distribution, and graphs of dihedral angles at individual positions in the motifs. Conclusion Motivated Proteins is a publicly and freely accessible web application that enables protein scientists to study small three-dimensional motifs without requiring knowledge of either Structured Query Language or the underlying database schema.

  20. Motivated proteins: a web application for studying small three-dimensional protein motifs.

    Science.gov (United States)

    Leader, David P; Milner-White, E James

    2009-02-11

    Small loop-shaped motifs are common constituents of the three-dimensional structure of proteins. Typically they comprise between three and seven amino acid residues, and are defined by a combination of dihedral angles and hydrogen bonding partners. The most abundant of these are alphabeta-motifs, asx-motifs, asx-turns, beta-bulges, beta-bulge loops, beta-turns, nests, niches, Schellmann loops, ST-motifs, ST-staples and ST-turns. We have constructed a database of such motifs from a range of high-quality protein structures and built a web application as a visual interface to this. The web application, Motivated Proteins, provides access to these 12 motifs (with 48 sub-categories) in a database of over 400 representative proteins. Queries can be made for specific categories or sub-categories of motif, motifs in the vicinity of ligands, motifs which include part of an enzyme active site, overlapping motifs, or motifs which include a particular amino acid sequence. Individual proteins can be specified, or, where appropriate, motifs for all proteins listed. The results of queries are presented in textual form as an (X)HTML table, and may be saved as parsable plain text or XML. Motifs can be viewed and manipulated either individually or in the context of the protein in the Jmol applet structural viewer. Cartoons of the motifs imposed on a linear representation of protein secondary structure are also provided. Summary information for the motifs is available, as are histograms of amino acid distribution, and graphs of dihedral angles at individual positions in the motifs. Motivated Proteins is a publicly and freely accessible web application that enables protein scientists to study small three-dimensional motifs without requiring knowledge of either Structured Query Language or the underlying database schema.

  1. Shape-dependent designability studies of lattice proteins

    International Nuclear Information System (INIS)

    Peto, Myron; Kloczkowski, Andrzej; Jernigan, Robert L

    2007-01-01

    One important problem in computational structural biology is protein designability, that is, why protein sequences are not random strings of amino acids but instead show regular patterns that encode protein structures. Many previous studies that have attempted to solve the problem have relied upon reduced models of proteins. In particular, the 2D square and the 3D cubic lattices together with reduced amino acid alphabet models have been examined extensively and have led to interesting results that shed some light on the evolutionary relationship among proteins. Here we perform designability studies on the 2D square lattice and explore the effects of variable overall shapes on protein designability using a binary hydrophobic-polar (HP) amino acid alphabet. Because we rely on a simple energy function that counts the total number of H-H interactions between non-sequential residues, we restrict our studies to protein shapes that have the same number of residues and also a constant number of non-bonded contacts. We have found that there is a marked difference in the designability between various protein shapes, with some of them accounting for a significantly larger share of the total foldable sequences

  2. The powerful high pressure tool for protein conformational studies

    Directory of Open Access Journals (Sweden)

    S. Marchal

    2005-08-01

    Full Text Available The pressure behavior of proteins may be summarized as a the pressure-induced disordering of their structures. This thermodynamic parameter has effects on proteins that are similar but not identical to those induced by temperature, the other thermodynamic parameter. Of particular importance are the intermolecular interactions that follow partial protein unfolding and that give rise to the formation of fibrils. Because some proteins do not form fibrils under pressure, these observations can be related to the shape of the stability diagram. Weak interactions which are differently affected by hydrostatic pressure or temperature play a determinant role in protein stability. Pressure acts on the 2º, 3º and 4º structures of proteins which are maintained by electrostatic and hydrophobic interactions and by hydrogen bonds. We present some typical examples of how pressure affects the tertiary structure of proteins (the case of prion proteins, induces unfolding (ataxin, is a convenient tool to study enzyme dissociation (enolase, and provides arguments to understand the role of the partial volume of an enzyme (butyrylcholinesterase. This approach may have important implications for the understanding of the basic mechanism of protein diseases and for the development of preventive and therapeutic measures.

  3. Photophysical studies of PET based acridinedione dyes with globular protein: Bovine serum albumin

    International Nuclear Information System (INIS)

    Rajendran, Kumaran; Perumal, Ramamurthy

    2010-01-01

    Interaction of acridinedione dyes with model transport proteins, bovine serum albumin (BSA) in aqueous solution were investigated by fluorescence spectral studies. A fluorescence enhancement was observed on the addition of BSA to photoinduced electron transfer (PET) based acridinedione dyes, which posses C 6 H 4 (p-OCH 3 ) in the 9th position of the basic acridinedione ring. On the contrary, the addition of BSA to non-PET based acridinedione dyes with methyl or phenyl substitution in the 9th position does not result in any fluorescence enhancement. The enhancement in the fluorescence intensity is attributed to the suppression of PET process through space between -OCH 3 group and the acridinedione moiety is elucidated by steady state fluorescence measurements. The fluorescence anisotropy value (r) of 0.40 reveals that the motion of the dye molecule is highly constrained and is largely confined to the rigid microenvironment of the protein molecule. The binding constant (K) was found to be in the order of 6.0x10 3 [M] -1 , which implies the existence of hydrophobic interaction between the PET based dye and BSA. Time resolved fluorescence lifetime measurements reveal that the PET based acridinedione dye preferably binds in the hydrophobic interior of BSA.

  4. SNC Oxygen Fugacity Recorded in Pyroxenes and its Implications for the Oxidation State of the Martian Interior: An Experimental and Analytical Study

    Science.gov (United States)

    McCanta, M. C.; Rutherford, M. J.

    2003-01-01

    Knowledge of the oxidation state of a magma is critical as it is one of the parameters which controls the nature and composition of the resulting crystals. In terrestrial magmatic systems, oxygen fugacity (fo2) is known to vary by over nine orders of magnitude. With variations of this magnitude, understanding the compositional differences, phase changes, and crystallization sequence variations, caused by the magma fo2, is essential in deciphering the origin of all igneous rocks. Magmatic oxidation state is of great importance in that it reflects the degree of oxidation of the source region and can provide insight into magmatic processes, such as metasomatism, degassing, and assimilation, which may have changed them. Carmichael [1991] argues that most magmas are unlikely to have their redox states altered from those of their source region. This assumption allows for estimation of the oxidation state of planetary interiors. Conversely, it is known that the fo2 of the magma can be affected by other processes, which occur outside of the source region and therefore, the oxidation state may record those too. Processes which could overprint source region fugacities include melt dehydrogenation or other volatile loss, water or melt infiltration, or assimilation of oxidized or reduced wallrock. Understanding which of these processes is responsible for the redox state of a magma can provide crucial information regarding igneous processes and other forces active in the region. The composition of the SNC basalts and their widely varying proposed oxidation states raise some interesting questions. Do the SNC meteorites have an oxidized or reduced signature? What was the oxygen fugacity of the SNC source region at the time of melt generation? Is the fugacity calculated for the various SNC samples the fugacity of the magma source region or was it overprinted by later events? Are there different oxidation states in the Martian interior or a single one? This proposal seeks to

  5. Preclinical studies on new proteins as carrier for glycoconjugate vaccines.

    Science.gov (United States)

    Tontini, M; Romano, M R; Proietti, D; Balducci, E; Micoli, F; Balocchi, C; Santini, L; Masignani, V; Berti, F; Costantino, P

    2016-07-29

    Glycoconjugate vaccines are made of carbohydrate antigens covalently bound to a carrier protein to enhance their immunogenicity. Among the different carrier proteins tested in preclinical and clinical studies, five have been used so far for licensed vaccines: Diphtheria and Tetanus toxoids, the non-toxic mutant of diphtheria toxin CRM197, the outer membrane protein complex of Neisseria meningitidis serogroup B and the Protein D derived from non-typeable Haemophilus influenzae. Availability of novel carriers might help to overcome immune interference in multi-valent vaccines containing several polysaccharide-conjugate antigens, and also to develop vaccines which target both protein as well saccharide epitopes of the same pathogen. Accordingly we have conducted a study to identify new potential carrier proteins. Twenty-eight proteins, derived from different bacteria, were conjugated to the model polysaccharide Laminarin and tested in mice for their ability in inducing antibodies against the carbohydrate antigen and eight of them were subsequently tested as carrier for serogroup meningococcal C oligosaccharides. Four out of these eight were able to elicit in mice satisfactory anti meningococcal serogroup C titers. Based on immunological evaluation, the Streptococcus pneumoniae protein spr96/2021 was successfully evaluated as carrier for serogroups A, C, W, Y and X meningococcal capsular saccharides. Copyright © 2016. Published by Elsevier Ltd.

  6. Dynamical measurements of the interior structure of exoplanets

    International Nuclear Information System (INIS)

    Becker, Juliette C.; Batygin, Konstantin

    2013-01-01

    Giant gaseous planets often reside on orbits in sufficient proximity to their host stars for the planetary quadrupole gravitational field to become non-negligible. In presence of an additional planetary companion, a precise characterization of the system's orbital state can yield meaningful constraints on the transiting planet's interior structure. However, such methods can require a very specific type of system. This paper explores the dynamic range of applicability of these methods and shows that interior structure calculations are possible for a wide array of orbital architectures. The HAT-P-13 system is used as a case study, and the implications of perturbations arising from a third distant companion on the feasibility of an interior calculation are discussed. We find that the method discussed here is likely to be useful in studying other planetary systems, allowing the possibility of an expanded survey of the interiors of exoplanets.

  7. Scout-view assisted interior micro-CT

    International Nuclear Information System (INIS)

    Sharma, Kriti Sen; Narayanan, Shree; Agah, Masoud; Holzner, Christian; Vasilescu, Dragoş M; Jin, Xin; Hoffman, Eric A; Yu, Hengyong; Wang, Ge

    2013-01-01

    Micro computed tomography (micro-CT) is a widely-used imaging technique. A challenge of micro-CT is to quantitatively reconstruct a sample larger than the field-of-view (FOV) of the detector. This scenario is characterized by truncated projections and associated image artifacts. However, for such truncated scans, a low resolution scout scan with an increased FOV is frequently acquired so as to position the sample properly. This study shows that the otherwise discarded scout scans can provide sufficient additional information to uniquely and stably reconstruct the interior region of interest. Two interior reconstruction methods are designed to utilize the multi-resolution data without significant computational overhead. While most previous studies used numerically truncated global projections as interior data, this study uses truly hybrid scans where global and interior scans were carried out at different resolutions. Additionally, owing to the lack of standard interior micro-CT phantoms, we designed and fabricated novel interior micro-CT phantoms for this study to provide means of validation for our algorithms. Finally, two characteristic samples from separate studies were scanned to show the effect of our reconstructions. The presented methods show significant improvements over existing reconstruction algorithms. (paper)

  8. Creating Library Interiors: Planning and Design Considerations.

    Science.gov (United States)

    Jones, Plummer Alston, Jr.; Barton, Phillip K.

    1997-01-01

    Examines design considerations for public library interiors: access; acoustical treatment; assignable and nonassignable space; building interiors: ceilings, clocks, color, control, drinking fountains; exhibit space: slotwall display, floor coverings, floor loading, furniture, lighting, mechanical systems, public address, copying machines,…

  9. Effect of area on color harmony in interior spaces

    OpenAIRE

    Odabaşıoğlu, Seden

    2015-01-01

    Cataloged from PDF version of article. Thesis (Ph.D.): Bilkent University, Department of Interior Architecture and Environmental Design, İhsan Doğramacı Bilkent University, 2015. Includes bibliographical references (leaves 142-152). The main aim of this study is to examine the effect of area on color harmony in interior spaces. Area in color harmony is the relative amount of different color areas represented as a proportion on which color harmony depends. Colors in the color ...

  10. Study of the transport of mercurial compounds by seric proteins

    International Nuclear Information System (INIS)

    Jullien-Saint Guily, Nicole

    1970-01-01

    A bond between the seric proteins and various mercurial compounds labeled with the radioisotopes 203 Hg and 197 Hg was demonstrated by means of research methods specific to radioactivity combined with protein separation techniques. In the course of this study it was shown how strongly the composition of the buffer during electrophoretic migration influences the transport of certain organo-mercurial compounds by the seric proteins. By means of a thioloprive: N - ethyl - maleimide, labeled with 14 C, it was proved that the bonding sites between the proteins and the mercurial compounds were the thiol groups of the proteins but that other bonding sites, in particular the amino groups, could also be involved. (author) [fr

  11. Can microbes compete with cows for sustainable protein production - A feasibility study on high quality protein

    Science.gov (United States)

    Vestergaard, Mike; Chan, Siu Hung Joshua; Jensen, Peter Ruhdal

    2016-11-01

    An increasing population and their increased demand for high-protein diets will require dramatic changes in the food industry, as limited resources and environmental issues will make animal derived foods and proteins, gradually more unsustainable to produce. To explore alternatives to animal derived proteins, an economic model was built around the genome-scale metabolic network of E. coli to study the feasibility of recombinant protein production as a food source. Using a novel model, we predicted which microbial production strategies are optimal for economic return, by capturing the tradeoff between the market prices of substrates, product output and the efficiency of microbial production. A case study with the food protein, Bovine Alpha Lactalbumin was made to evaluate the upstream economic feasibilities. Simulations with different substrate profiles at maximum productivity were used to explore the feasibility of recombinant Bovine Alpha Lactalbumin production coupled with market prices of utilized materials. We found that recombinant protein production could be a feasible food source and an alternative to traditional sources.

  12. Can microbes compete with cows for sustainable protein production - A feasibility study on high quality protein.

    Science.gov (United States)

    Vestergaard, Mike; Chan, Siu Hung Joshua; Jensen, Peter Ruhdal

    2016-11-08

    An increasing population and their increased demand for high-protein diets will require dramatic changes in the food industry, as limited resources and environmental issues will make animal derived foods and proteins, gradually more unsustainable to produce. To explore alternatives to animal derived proteins, an economic model was built around the genome-scale metabolic network of E. coli to study the feasibility of recombinant protein production as a food source. Using a novel model, we predicted which microbial production strategies are optimal for economic return, by capturing the tradeoff between the market prices of substrates, product output and the efficiency of microbial production. A case study with the food protein, Bovine Alpha Lactalbumin was made to evaluate the upstream economic feasibilities. Simulations with different substrate profiles at maximum productivity were used to explore the feasibility of recombinant Bovine Alpha Lactalbumin production coupled with market prices of utilized materials. We found that recombinant protein production could be a feasible food source and an alternative to traditional sources.

  13. Definition study for temperature control in advanced protein crystal growth

    Science.gov (United States)

    Nyce, Thomas A.; Rosenberger, Franz; Sowers, Jennifer W.; Monaco, Lisa A.

    1990-01-01

    Some of the technical requirements for an expedient application of temperature control to advanced protein crystal growth activities are defined. Lysozome was used to study the effects of temperature ramping and temperature gradients for nucleation/dissolution and consecutive growth of sizable crystals and, to determine a prototype temperature program. The solubility study was conducted using equine serum albumin (ESA) which is an extremely stable, clinically important protein due to its capability to bind and transport many different small ions and molecules.

  14. Market Aspects of an Interior Design Program.

    Science.gov (United States)

    Gold, Judy E.

    A project was conducted to evaluate a proposed interior design program in order to determine the marketability (job availability in the field of interior design and home furnishings merchandising) and the feasibility (educational requirements for entrance into the interior design and home furnishings merchandising job market) of the program. To…

  15. State Skill Standards: Housing and Interior Design

    Science.gov (United States)

    Nevada Department of Education, 2008

    2008-01-01

    Meeting the Housing and Interior Design Standards will provide students with skills for personal family life and towards becoming a professional in the interior design field. The mission of Housing and Interior Design education is to prepare students for family life, work life, and careers in the fashion industry by creating opportunities to…

  16. Protein Complexes in Urine Interfere with Extracellular Vesicle Biomarker Studies

    Directory of Open Access Journals (Sweden)

    Magda Wachalska

    2016-03-01

    Full Text Available Urine exosomes (extracellular vesicles; EVs contain (microRNA (miRNA and protein biomarkers that are useful for the non-invasive diagnosis of various urological diseases. However, the urinary Tamm-Horsfall protein (THP complex, which forms at reduced temperatures, may affect EV isolation and may also lead to contamination by other molecules including microRNAs (miRNAs. Therefore, we compared the levels of three miRNAs within the purified EV fraction and THP- protein-network. Urine was collected from healthy donors and EVs were isolated by ultracentrifugation (UC, two commercial kits or sepharose size-exclusion chromatography (SEC. SEC enables the separation of EVs from protein-complexes in urine. After UC, the isolation of EV-miRNA was compared with two commercial kits. The EV isolation efficiency was evaluated by measuring the EV protein markers, Alix and TSG101, CD63 by Western blotting, or miR-375, miR-204 and miR-21 by RT-qPCR. By using commercial kits, EV isolation resulted in either low yields or dissimilar miRNA levels. Via SEC, the EVs were separated from the protein-complex fraction. Importantly, a different ratio was observed between the three miRNAs in the protein fraction compared to the EV fraction. Thus, protein-complexes within urine may influence EV-biomarker studies. Therefore, the characterization of the isolated EV fraction is important to obtain reproducible results.

  17. 3D radar wavefield tomography of comet interiors

    Science.gov (United States)

    Sava, Paul; Asphaug, Erik

    2018-04-01

    Answering fundamental questions about the origin and evolution of small planetary bodies hinges on our ability to image their surface and interior structure in detail and at high resolution. The interior structure is not easily accessible without systematic imaging using, e.g., radar transmission and reflection data from multiple viewpoints, as in medical tomography. Radar tomography can be performed using methodology adapted from terrestrial exploration seismology. Our feasibility study primarily focuses on full wavefield methods that facilitate high quality imaging of small body interiors. We consider the case of a monostatic system (co-located transmitters and receivers) operated in various frequency bands between 5 and 15 MHz, from a spacecraft in slow polar orbit around a spinning comet nucleus. Using realistic numerical experiments, we demonstrate that wavefield techniques can generate high resolution tomograms of comets nuclei with arbitrary shape and complex interior properties.

  18. [Interior] Configuration options, habitability and architectural aspects of the transfer habitat module (THM) and the surface habitat on Mars (SHM)/ESA's AURORA human mission to Mars (HMM) study

    Science.gov (United States)

    Imhof, Barbara

    2007-02-01

    This paper discusses the findings for [Interior] configuration options, habitability and architectural aspects of a first human spacecraft to Mars. In 2003 the space architecture office LIQUIFER was invited by the European Space Agency's (ESA) AURORA Program committee to consult the scientists and engineers from the European Space and Technology Center (ESTEC) and other European industrial communities with developing the first human mission to Mars, which will take place in 2030, regarding the architectural issues of crewed habitats. The task was to develop an interior configuration for a transfer vehicle (TV) to Mars, especially a transfer habitation module (THM) and a surface habitat module (SHM) on Mars. The total travel time Earth—Mars and back for a crew of six amounts to approximately 900 days. After a 200-day-flight three crewmembers will land on Mars in the Mars excursion vehicle (MEV) and will live and work in the SHM for 30 days. For 500 days before the 200-day journey back the spacecraft continues to circle the Martian orbit for further exploration. The entire mission program is based on our present knowledge of technology. The project was compiled during a constant feedback-design process and trans-disciplinary collaboration sessions in the ESA-ESTEC concurrent design facility. Long-term human space flight sets new spatial conditions and requirements to the design concept. The guidelines were developed from relevant numbers and facts of recognized standards, interviews with astronauts/cosmonauts and from analyses about habitability, sociology, psychology and configuration concepts of earlier space stations in combination with the topics of the individual's perception and relation of space. Result of this study is the development of a prototype concept for the THM and SHM with detailed information and complete plans of the interior configuration, including mass calculations. In addition the study contains a detailed explanation of the development of

  19. Molecular modeling of protein materials: case study of elastin

    Science.gov (United States)

    Tarakanova, Anna; Buehler, Markus J.

    2013-09-01

    Molecular modeling of protein materials is a quickly growing area of research that has produced numerous contributions in fields ranging from structural engineering to medicine and biology. We review here the history and methods commonly employed in molecular modeling of protein materials, emphasizing the advantages for using modeling as a complement to experimental work. We then consider a case study of the protein elastin, a critically important ‘mechanical protein’ to exemplify the approach in an area where molecular modeling has made a significant impact. We outline the progression of computational modeling studies that have considerably enhanced our understanding of this important protein which endows elasticity and recoil to the tissues it is found in, including the skin, lungs, arteries and the heart. A vast collection of literature has been directed at studying the structure and function of this protein for over half a century, the first molecular dynamics study of elastin being reported in the 1980s. We review the pivotal computational works that have considerably enhanced our fundamental understanding of elastin's atomistic structure and its extraordinary qualities—focusing on two in particular: elastin's superb elasticity and the inverse temperature transition—the remarkable ability of elastin to take on a more structured conformation at higher temperatures, suggesting its effectiveness as a biomolecular switch. Our hope is to showcase these methods as both complementary and enriching to experimental approaches that have thus far dominated the study of most protein-based materials.

  20. Study of the interactions between riboflavin and protein

    International Nuclear Information System (INIS)

    Zhao Hongwei; Zhang Zhaoxia; Zhu Hongping; Ge Min; Miao Jinling; Wang Wenfeng; Yao Side

    2006-01-01

    Riboflavin (VB 2 ), a vitamin that is a natural constituent of living organisms, plays an important role in the process of metabolism and it is essential for normal cellular functions and growth. As an endogenous photosensitizer, riboflavin induces photooxidation damages to cells of skin and eye, causing inflammation, accelerated aging and mutation. The photodynamic actions of riboflavin on DNA have been studied extensively, however, its photodynamic actions on protein and enzyme are less studied due to the complex types and structures of proteins, and less attentions have been paid to photosensitive protein damages than DNA. In our lab, the interactions between riboflavin and serum albumin and lysozyme have been carried out by using transient absorption spectrometry, emission spectrometer analysis and electrophoresis techniques. It was found that stable state products and transient process of photosensitive damage to proteins were closely relative to concentration of riboflavin, time of irradiation and the atmosphere of the solutions. The results indicates that proteins can be photosensitive damaged by riboflavin irradiated by UV lights. Riboflavin can quench the intrinsic fluorescence of protein. Both dynamic and static quenching are simultaneous involved. The binding constants, the kinetics and spectroscopic properties of riboflavin interaction with albumin and lysozyme have also been investigated. Mechanisms of the photosensitive damages to proteins were discussed. The experiments also indicated that antioxidants such as melatonin and chlorogenic acid can reduce the damage of lysozyme effectively. (authors)

  1. In vivo Biotinylation Based Method for the Study of Protein-Protein Proximity in Eukaryotic Cells

    Directory of Open Access Journals (Sweden)

    Arman Kulyyassov

    2014-01-01

    time after its interaction with another protein has occurred. This application should be particularly useful for studying multistep intracellular processes, where the proximities between proteins and protein properties typically changed in a sequential manner. Conclusion: This approach has promised in adding temporal dimension in addition to helping reconstruct cell topology in space.

  2. Structural study of surfactant-dependent interaction with protein

    Energy Technology Data Exchange (ETDEWEB)

    Mehan, Sumit; Aswal, Vinod K., E-mail: vkaswal@barc.gov.in [Solid State Physics Division, Bhabha Atomic Research Centre, Mumbai 400 085 (India); Kohlbrecher, Joachim [Laboratory for Neutron Scattering, Paul Scherrer Institut, CH-5232 PSI Villigen (Switzerland)

    2015-06-24

    Small-angle neutron scattering (SANS) has been used to study the complex structure of anionic BSA protein with three different (cationic DTAB, anionic SDS and non-ionic C12E10) surfactants. These systems form very different surfactant-dependent complexes. We show that the structure of protein-surfactant complex is initiated by the site-specific electrostatic interaction between the components, followed by the hydrophobic interaction at high surfactant concentrations. It is also found that hydrophobic interaction is preferred over the electrostatic interaction in deciding the resultant structure of protein-surfactant complexes.

  3. Interior-exterior connection in architectural design based on the incorporation of spatial in between layers. Study of four architectural projects

    Directory of Open Access Journals (Sweden)

    Krstić Hristina

    2016-01-01

    Full Text Available Different spatial layers in the architectural structure of a building can create particular spatial relations and an architectural space that cannot be defined as an inner space or as an outer space, but one which has the characteristics of both. This space, which can be called “in between space”, appears as the result of a specific design concept in which the architectural composition is created by gradual insertion of volumes one inside another, like a box that is placed inside a box, inside of which is placed another smaller box and so on. The incorporation of various layers in the spatial arrangement of volumes in certain architectural compositions can be conceived as a possible approach in connecting the interior and exterior. This kind of conceptual design distinguishes itself from the common approach by its specific architecture that offers richness, variety, complexity and unique perception of space, thereby increasing its value. The paper investigates this particular concept through the analysis of four residential houses (Villa Le Lac by Le Corbusier, Solar House by Oswald Mathias Ungers, House N by Sou Fujimoto and Guerrero House by Alberto Campo Baeza, and it strives to find out the concept’s use and advantages, all with the aim of opening up new possibilities in the design of buildings and enriching the design process.

  4. Design of asymmetric particles containing a charged interior and a neutral surface charge: comparative study on in vivo circulation of polyelectrolyte microgels.

    Science.gov (United States)

    Chen, Kai; Xu, Jing; Luft, J Christopher; Tian, Shaomin; Raval, Jay S; DeSimone, Joseph M

    2014-07-16

    Lowering the modulus of hydrogel particles could enable them to bypass in vivo physical barriers that would otherwise filter particles with similar size but higher modulus. Incorporation of electrolyte moieties into the polymer network of hydrogel particles to increase the swelling ratio is a straightforward and quite efficient way to decrease the modulus. In addition, charged groups in hydrogel particles can also help secure cargoes. However, the distribution of charged groups on the surface of a particle can accelerate the clearance of particles. Herein, we developed a method to synthesize highly swollen microgels of precise size with near-neutral surface charge while retaining interior charged groups. A strategy was employed to enable a particle to be highly cross-linked with very small mesh size, and subsequently PEGylated to quench the exterior amines only without affecting the internal amines. Acidic degradation of the cross-linker allows for swelling of the particles to microgels with a desired size and deformability. The microgels fabricated demonstrated extended circulation in vivo compared to their counterparts with a charged surface, and could potentially be utilized in in vivo applications including as oxygen carriers or nucleic acid scavengers.

  5. Structural Studies of G Protein-Coupled Receptors.

    Science.gov (United States)

    Zhang, Dandan; Zhao, Qiang; Wu, Beili

    2015-10-01

    G protein-coupled receptors (GPCRs) constitute the largest and the most physiologically important membrane protein family that recognizes a variety of environmental stimuli, and are drug targets in the treatment of numerous diseases. Recent progress on GPCR structural studies shed light on molecular mechanisms of GPCR ligand recognition, activation and allosteric modulation, as well as structural basis of GPCR dimerization. In this review, we will discuss the structural features of GPCRs and structural insights of different aspects of GPCR biological functions.

  6. Techniques for studying protein trafficking and molecular motors in neurons.

    Science.gov (United States)

    Feng, Shanxi; Arnold, Don B

    2016-09-01

    This review focused on techniques that facilitated the visualization of protein trafficking. In the mid-1990s the cloning of GFP allowed fluorescently tagged proteins to be expressed in cells and then visualized in real time. This advance allowed a glimpse, for the first time, of the complex system within cells for distributing proteins. It quickly became apparent, however, that time-lapse sequences of exogenously expressed GFP-labeled proteins can be difficult to interpret. Reasons for this include the relatively low signal that comes from moving proteins and high background rates from stationary proteins and other sources, as well as the difficulty of identifying the origins and destinations of specific vesicular carriers. In this review a range of techniques that have overcome these issues to varying degrees was reviewed and the insights into protein trafficking that they have enabled were discussed. Concentration will be on neurons, as they are highly polarized and, thus, their trafficking systems tend to be accessible for study. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

  7. Structural basis of protein oxidation resistance: a lysozyme study.

    Science.gov (United States)

    Girod, Marion; Enjalbert, Quentin; Brunet, Claire; Antoine, Rodolphe; Lemoine, Jérôme; Lukac, Iva; Radman, Miroslav; Krisko, Anita; Dugourd, Philippe

    2014-01-01

    Accumulation of oxidative damage in proteins correlates with aging since it can cause irreversible and progressive degeneration of almost all cellular functions. Apparently, native protein structures have evolved intrinsic resistance to oxidation since perfectly folded proteins are, by large most robust. Here we explore the structural basis of protein resistance to radiation-induced oxidation using chicken egg white lysozyme in the native and misfolded form. We study the differential resistance to oxidative damage of six different parts of native and misfolded lysozyme by a targeted tandem/mass spectrometry approach of its tryptic fragments. The decay of the amount of each lysozyme fragment with increasing radiation dose is found to be a two steps process, characterized by a double exponential evolution of their amounts: the first one can be largely attributed to oxidation of specific amino acids, while the second one corresponds to further degradation of the protein. By correlating these results to the structural parameters computed from molecular dynamics (MD) simulations, we find the protein parts with increased root-mean-square deviation (RMSD) to be more susceptible to modifications. In addition, involvement of amino acid side-chains in hydrogen bonds has a protective effect against oxidation Increased exposure to solvent of individual amino acid side chains correlates with high susceptibility to oxidative and other modifications like side chain fragmentation. Generally, while none of the structural parameters alone can account for the fate of peptides during radiation, together they provide an insight into the relationship between protein structure and susceptibility to oxidation.

  8. Comparative study on the effects of whey protein isolate and isolated soy protein on healthy adults

    International Nuclear Information System (INIS)

    Ezzal-arab, A.

    2003-01-01

    The objective of study was to investigate the effects of whey protein isolate (WPI) and isolated soy protein (ISP) on total serum levels of amino acids (glutathione, methionine and cystine), triglycerides serum cholesterol, HDL-cholesterol, LDL-cholesterol, thyroxine (T 4 ) and estradiol hormone (E 2 ). The results revealed that the WPI group showed significant increased glutathione, methionine and cystine levels while the SPI group exhibited only significant decreased cystine level. The WPI group did not show significant change in T 4 thyroid activity, whereas the SPI group had significant decreased T 4 thyroid hormone. Females ingested the WPI showed significant decrease in estradiol levels compared to those in the SPI group. The data showed significant decreases in total cholesterol, triglycerides and LDL-cholesterol regardless of ingesting whey protein or soy protein while HDL-cholesterol did not show any change with both proteins. The results of this study support the hypothesis that WPI may be more conductive to good health than SPI because it can increase the levels of some amino acids which responsible for the life of the cell, enhance immunity and promote health in general

  9. A mechanistic study of Protein A chromatography resin lifetime.

    Science.gov (United States)

    Jiang, Canping; Liu, Jing; Rubacha, Michael; Shukla, Abhinav A

    2009-07-31

    A mechanistic study into Protein A chromatographic resin lifetime limitations is presented. Binding and mass transport properties of two widely used agarose-based Protein A resins were studied to distinguish between the roles of resin fouling due to product/impurity build-up and ligand degradation as contributory factors towards the decline in binding capacity with use. Cycling studies were conducted with and without product loading on the columns to separate out the influence of resin fouling. Ligand degradation under the mildly alkaline conditions used for column regeneration was determined to be the primary cause for Protein A resin capacity decline with usage. The use of lower concentrations of caustic and the use of stabilizing excipients to protect the Protein A ligand during cleaning and sanitization were found to be useful techniques in maintaining column performance. The results presented in this paper provide a clearer understanding of the causative factors that limit Protein A chromatographic resin lifetime. It is anticipated that these findings will assist in the development of more robust and economical downstream manufacturing processes for monoclonal antibody and Fc fusion protein purification.

  10. Interior microelectrolysis oxidation of polyester wastewater and its treatment technology.

    Science.gov (United States)

    Yang, Xiaoyi

    2009-09-30

    This paper has investigated the effects of interior microelectrolysis pretreatment on polyester wastewater treatment and analyzed its mechanism on COD and surfactant removal. The efficiency of interior microelectrolysis is mainly influenced by solution pH, aeration and reaction time. Contaminants can be removed not only by redox reaction and flocculation in the result of ferrous and ferric hydroxides but also by electrophoresis under electric fields created by electron flow. pH confirms the chemical states of surfactants, Fe(II)/Fe(III) ratio and the redox potential, and thus influences the effects of electrophoresis, flocculation and redox action on contaminant removal. Anaerobic and aerobic batch tests were performed to study the degradation of polyester wastewater. The results imply that interior microelectrolysis and anaerobic pretreatment are lacking of effectiveness if applied individually in treating polyester wastewater in spite of their individual advantages. The interior microelectrolysis-anaerobic-aerobic process was investigated to treat polyester wastewater with comparison with interior microelectrolysis-aerobic process and anaerobic-aerobic process. High COD removal efficiencies have been gotten by the combination of interior microelectrolysis with anaerobic technology and aerobic technology. The results also imply that only biological treatment was less effective in polyester wastewater treatment.

  11. Interior microelectrolysis oxidation of polyester wastewater and its treatment technology

    Energy Technology Data Exchange (ETDEWEB)

    Yang Xiaoyi, E-mail: yangxiaoyi@buaa.edu.cn [Department of Thermal Energy Engineering, BeiHang University, Beijing 100191 (China)

    2009-09-30

    This paper has investigated the effects of interior microelectrolysis pretreatment on polyester wastewater treatment and analyzed its mechanism on COD and surfactant removal. The efficiency of interior microelectrolysis is mainly influenced by solution pH, aeration and reaction time. Contaminants can be removed not only by redox reaction and flocculation in the result of ferrous and ferric hydroxides but also by electrophoresis under electric fields created by electron flow. pH confirms the chemical states of surfactants, Fe(II)/Fe(III) ratio and the redox potential, and thus influences the effects of electrophoresis, flocculation and redox action on contaminant removal. Anaerobic and aerobic batch tests were performed to study the degradation of polyester wastewater. The results imply that interior microelectrolysis and anaerobic pretreatment are lacking of effectiveness if applied individually in treating polyester wastewater in spite of their individual advantages. The interior microelectrolysis-anaerobic-aerobic process was investigated to treat polyester wastewater with comparison with interior microelectrolysis-aerobic process and anaerobic-aerobic process. High COD removal efficiencies have been gotten by the combination of interior microelectrolysis with anaerobic technology and aerobic technology. The results also imply that only biological treatment was less effective in polyester wastewater treatment.

  12. Interior microelectrolysis oxidation of polyester wastewater and its treatment technology

    International Nuclear Information System (INIS)

    Yang Xiaoyi

    2009-01-01

    This paper has investigated the effects of interior microelectrolysis pretreatment on polyester wastewater treatment and analyzed its mechanism on COD and surfactant removal. The efficiency of interior microelectrolysis is mainly influenced by solution pH, aeration and reaction time. Contaminants can be removed not only by redox reaction and flocculation in the result of ferrous and ferric hydroxides but also by electrophoresis under electric fields created by electron flow. pH confirms the chemical states of surfactants, Fe(II)/Fe(III) ratio and the redox potential, and thus influences the effects of electrophoresis, flocculation and redox action on contaminant removal. Anaerobic and aerobic batch tests were performed to study the degradation of polyester wastewater. The results imply that interior microelectrolysis and anaerobic pretreatment are lacking of effectiveness if applied individually in treating polyester wastewater in spite of their individual advantages. The interior microelectrolysis-anaerobic-aerobic process was investigated to treat polyester wastewater with comparison with interior microelectrolysis-aerobic process and anaerobic-aerobic process. High COD removal efficiencies have been gotten by the combination of interior microelectrolysis with anaerobic technology and aerobic technology. The results also imply that only biological treatment was less effective in polyester wastewater treatment.

  13. Environmental Approach In Interior Design Education In Turkey

    Directory of Open Access Journals (Sweden)

    Derya Adıgüzel

    2013-12-01

    Full Text Available These days there has been a severe encroachment on nature, a large amount of waste being generated, and natural resources being used irresponsibly during the design, application and usage phases of buildings. Environmental sensitivity is necessary during the construction of new buildings and re-usage of current buildings to resolve environmental problems. In order to increase environmental sensitivity, a great responsibility falls onto interior design along with other disciplines during the creation of living spaces. The accumulation of knowledge from career training and the level of awareness will determine the practical development of environmentally sensitive interior design. Therefore the purpose of this article is to make a determination of the current state of environmental design in interior design education in Turkey. The degree to which environmental design is reflected in the curricula of interior design departments was studied. The relationship between the awareness level of the students and the educational programs will be presented through three samples. Surveys were conducted at three universities that have varying degrees of environmental design within the interior design curricula. As a result, the importance of having an environmentally conscious design understanding within the curricula of interior design and recommendations for improving the environmental design awareness of students will be presented in this article.

  14. Effects of coloured lighting on the perception of interior spaces.

    Science.gov (United States)

    Odabaşioğlu, Seden; Olguntürk, Nіlgün

    2015-02-01

    Use of coloured lighting in interior spaces has become prevalent in recent years. Considerable importance is ascribed to coloured lighting in interior and lighting design. The effects of colour on the perception of interior spaces have been studied as surface colour; but here, the effects of three different types of chromatic light were investigated. The lighting differed in colour (red, green and white) and perceptions of interior space were assessed. 97 participants (59 women, 38 men; M age = 21.4 yr.) evaluated the experiment room on a questionnaire assessing eight evaluative factors: Pleasantness, Arousal, Aesthetics, Usefulness, Comfort, Spaciousness, Colour, and Lighting quality. Perceptions of the room differed by colour of lighting for some of the evaluative factors, but there was no sex difference in perceptions. Interior spaces may be perceived as equally pleasant under white, green and red lighting. Under white lighting a space is perceived as more useful, spacious, clear, and luminous. Green lighting would make the same effect. Green and white lighting were perceived equally comfortable in an interior space. Chromatic coloured lighting was perceived to be more aesthetic than white lighting. The results support previous findings for some evaluative factors, but differed for others.

  15. Study of the proteins in the defatted flour and protein concentrate of baru nuts (Dipteryx alata Vog)

    OpenAIRE

    Guimarães,Rita de Cássia Avellaneda; Favaro,Simone Palma; Viana,Antonio Camilo Arguelho; Braga Neto,José Antônio; Neves,Valdir Augusto; Honer,Michael Robin

    2012-01-01

    Baru (Dipteryx alata Vog.) is an abundant legume in the Brazilian Savanna. Its nuts can be exploited sustainably using its protein and lipid fractions. This study aimed to analyze the proteins of the nuts present in the defatted flour and protein concentrate in terms of their functional properties, the profile of their fractions, and the in vitro digestibility. The flour was defatted with hexane and extracted at the pH of higher protein solubility to obtain the protein concentrate. The electr...

  16. Molecular dynamics studies of protein folding and aggregation

    Science.gov (United States)

    Ding, Feng

    This thesis applies molecular dynamics simulations and statistical mechanics to study: (i) protein folding; and (ii) protein aggregation. Most small proteins fold into their native states via a first-order-like phase transition with a major free energy barrier between the folded and unfolded states. A set of protein conformations corresponding to the free energy barrier, Delta G >> kBT, are the folding transition state ensemble (TSE). Due to their evasive nature, TSE conformations are hard to capture (probability ∝ exp(-DeltaG/k BT)) and characterize. A coarse-grained discrete molecular dynamics model with realistic steric constraints is constructed to reproduce the experimentally observed two-state folding thermodynamics. A kinetic approach is proposed to identify the folding TSE. A specific set of contacts, common to the TSE conformations, is identified as the folding nuclei which are necessary to be formed in order for the protein to fold. Interestingly, the amino acids at the site of the identified folding nuclei are highly conserved for homologous proteins sharing the same structures. Such conservation suggests that amino acids that are important for folding kinetics are under selective pressure to be preserved during the course of molecular evolution. In addition, studies of the conformations close to the transition states uncover the importance of topology in the construction of order parameter for protein folding transition. Misfolded proteins often form insoluble aggregates, amyloid fibrils, that deposit in the extracellular space and lead to a type of disease known as amyloidosis. Due to its insoluble and non-crystalline nature, the aggregation structure and, thus the aggregation mechanism, has yet to be uncovered. Discrete molecular dynamics studies reveal an aggregate structure with the same structural signatures as in experimental observations and show a nucleation aggregation scenario. The simulations also suggest a generic aggregation mechanism

  17. In vitro study of proteins surface activity by tritium probe

    International Nuclear Information System (INIS)

    Chernysheva, M.G.; Badun, G.A.

    2010-01-01

    A new technique for in vitro studies of biomacromolecules interactions, their adsorption at aqueous/organic liquid interfaces and distribution in the bulk of liquid/liquid systems was developed. The method includes (1) tritium labeling of biomolecules by tritium thermal activation method and (2) scintillation phase step with organic phase, which can be concerned as a model of cellular membrane. Two globular proteins lysozyme and human serum albumin tested. We have determined the conditions of tritium labeling when labeled by-products can be easy separated by means of dialysis and size-exclusion chromatography. Scintillation phase experiments were conducted for three types of organic liquids. Thus, the influences of the nature of organic phase on proteins adsorption and its distribution in the bulk of aqueous/organic liquid system were determined. It was found that proteins possess high surface activity at aqueous/organic liquid interface. Furthermore, values of hydrophobicity of globular proteins were found by the experiment. (author)

  18. Analytical techniques for the study of polyphenol-protein interactions.

    Science.gov (United States)

    Poklar Ulrih, Nataša

    2017-07-03

    This mini review focuses on advances in biophysical techniques to study polyphenol interactions with proteins. Polyphenols have many beneficial pharmacological properties, as a result of which they have been the subject of intensive studies. The most conventional techniques described here can be divided into three groups: (i) methods used for screening (in-situ methods); (ii) methods used to gain insight into the mechanisms of polyphenol-protein interactions; and (iii) methods used to study protein aggregation and precipitation. All of these methods used to study polyphenol-protein interactions are based on modifications to the physicochemical properties of the polyphenols or proteins after binding/complex formation in solution. To date, numerous review articles have been published in the field of polyphenols. This review will give a brief insight in computational methods and biosensors and cell-based methods, spectroscopic methods including fluorescence emission, UV-vis adsorption, circular dichroism, Fourier transform infrared and mass spectrometry, nuclear magnetic resonance, X-ray diffraction, and light scattering techniques including small-angle X-ray scattering and small-angle neutron scattering, and calorimetric techniques (isothermal titration calorimetry and differential scanning calorimetry), microscopy, the techniques which have been successfully used for polyphenol-protein interactions. At the end the new methods based on single molecule detection with high potential to study polyphenol-protein interactions will be presented. The advantages and disadvantages of each technique will be discussed as well as the thermodynamic, kinetic or structural parameters, which can be obtained. The other relevant biophysical experimental techniques that have proven to be valuable, such electrochemical methods, hydrodynamic techniques and chromatographic techniques will not be described here.

  19. Nanodisc Films for Membrane Protein Studies by Neutron Reflection: Effect of the Protein Scaffold Choice

    OpenAIRE

    Bertram, Nicolas; Laursen, Tomas; Barker, Robert; Bavishi, Krutika; M?ller, Birger Lindberg; C?rdenas, Marit?

    2015-01-01

    Nanodisc films are a promising approach to study the equilibrium conformation of membrane bound proteins in native-like environment. Here we compare nanodisc formation for NADPH-dependent cytochrome P450 oxidoreductase (POR) using two different scaffold proteins, MSP1D1 and MSP1E3D1. Despite the increased stability of POR loaded MSP1E3D1 based nanodiscs in comparison to MSP1D1 based nanodiscs, neutron reflection at the silicon?solution interface showed that POR loaded MSP1E3D1 based nanodisc ...

  20. Study of total seed storage protein in indigenous Brassica species ...

    African Journals Online (AJOL)

    Genetic diversity was studied in 234 accessions of locally collected Brassica species for total seed protein content through sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). These accessions were collected from different locations of Pakistan. After the study of these accessions on SDS-PAGE, ...

  1. Spectroscopic studies on native proteins, glycated and inhibited nonenzymatically

    International Nuclear Information System (INIS)

    Gil, H; Otero, V; Contreras, S

    1995-01-01

    The nonenzymatic glucation is an irreversible process whose speed depends on the concentration reducer sugar in plasma. The glycated albumins is higher in diabetic people. Up to now, this has been indicated as an important mechanism in the pathology of the the secondary complications associated with diabetes and the normal aging. Recently a lot of interest has been focused on the search of certain compounds (inhibitors) to prevent the glucation and / or the formation of ending products of advanced glucation, AGE. The reaction of glucose with the human albumin and γ globulins and the effects of acid acetylsalicylic and ascorbic acid were studied. The proteins were incubated with glucose in absence and in presence of inhibitors for one month. The solutions were dialysed and then lyophilizated. The absorption spectra were taken for native proteins, glycated and inhibited (2 mg/ml) in phosphate 10 mM buffer, p H 7.3. It is observed that the spectra of the acetylate proteins and native proteins are practically same. This can be interpreted as an inhibitor effect of acid acetylsalicylic on glucation. In all the observed cases the glycated proteins absorb more than the native ones and they present a line toward the visible region. The ascorbic acid absorbs below the native proteins and it doesn't present the same characteristics. The increase and / or the decrease in the absorption picks can be associated with environmental changes affecting the groups involved in the absorption process [es

  2. Intake of total protein, plant protein and animal protein in relation to blood pressure : a meta-analysis of observational and intervention studies

    NARCIS (Netherlands)

    Tielemans, S. M. A. J.; Altorf-van der Kuil, W.; Engberink, M. F.; Brink, E. J.; van Baak, M. A.; Bakker, S. J. L.; Geleijnse, J. M.

    There is growing evidence from epidemiological studies that dietary protein may beneficially influence blood pressure (BP), but findings are inconclusive. We performed a meta-analysis of 29 observational studies and randomized controlled trials (RCTs) of dietary protein and types of protein in

  3. A kinetic study on sesame cake protein hydrolysis by Alcalase.

    Science.gov (United States)

    Demirhan, Elçin; Apar, Dilek Kılıç; Özbek, Belma

    2011-01-01

    In the present study, the hydrolysis of sesame cake protein was performed by Alcalase, a bacterial protease produced by Bacillus licheniformis, to investigate the reaction kinetics of sesame cake hydrolysis and to determine decay and product inhibition effects for Alcalase. The reactions were carried out for 10 min in 0.1 L of aqueous solutions containing 10, 15, 20, 25, and 30 g protein/L at various temperature and pH values. To determine decay and product inhibition effects for Alcalase, a series of inhibition experiments were conducted with the addition of various amounts of hydrolysate. The reaction kinetics was investigated by initial rate approach. The initial reaction rates were determined from the slopes of the linear models that fitted to the experimental data. The kinetic parameters, K(m) and V(max), were estimated as 41.17 g/L and 9.24 meqv/L x min. The Lineweaver-Burk plots showed that the type of inhibition for Alcalase determined as uncompetitive, and the inhibition constant, K(i), was estimated as 38.24% (hydrolysate/substrate mixture). Practical Application: Plant proteins are increasingly being used as an alternative to proteins from animal sources to perform functional roles in food formulation. Knowledge of the kinetics of the hydrolysis reaction is essential for the optimization of enzymatic protein hydrolysis and for increasing the utilization of plant proteins in food products. Therefore, in the present study, the hydrolysis of sesame cake protein was performed by Alcalase, a bacterial protease produced by B. licheniformis, to investigate the reaction kinetics of sesame cake hydrolysis and to determine decay and product inhibition effects for Alcalase.

  4. Lipid nanotechnologies for structural studies of membrane-associated proteins.

    Science.gov (United States)

    Stoilova-McPhie, Svetla; Grushin, Kirill; Dalm, Daniela; Miller, Jaimy

    2014-11-01

    We present a methodology of lipid nanotubes (LNT) and nanodisks technologies optimized in our laboratory for structural studies of membrane-associated proteins at close to physiological conditions. The application of these lipid nanotechnologies for structure determination by cryo-electron microscopy (cryo-EM) is fundamental for understanding and modulating their function. The LNTs in our studies are single bilayer galactosylceramide based nanotubes of ∼20 nm inner diameter and a few microns in length, that self-assemble in aqueous solutions. The lipid nanodisks (NDs) are self-assembled discoid lipid bilayers of ∼10 nm diameter, which are stabilized in aqueous solutions by a belt of amphipathic helical scaffold proteins. By combining LNT and ND technologies, we can examine structurally how the membrane curvature and lipid composition modulates the function of the membrane-associated proteins. As proof of principle, we have engineered these lipid nanotechnologies to mimic the activated platelet's phosphtaidylserine rich membrane and have successfully assembled functional membrane-bound coagulation factor VIII in vitro for structure determination by cryo-EM. The macromolecular organization of the proteins bound to ND and LNT are further defined by fitting the known atomic structures within the calculated three-dimensional maps. The combination of LNT and ND technologies offers a means to control the design and assembly of a wide range of functional membrane-associated proteins and complexes for structural studies by cryo-EM. The presented results confirm the suitability of the developed methodology for studying the functional structure of membrane-associated proteins, such as the coagulation factors, at a close to physiological environment. © 2014 Wiley Periodicals, Inc.

  5. Structural basis of protein oxidation resistance: a lysozyme study.

    Directory of Open Access Journals (Sweden)

    Marion Girod

    Full Text Available Accumulation of oxidative damage in proteins correlates with aging since it can cause irreversible and progressive degeneration of almost all cellular functions. Apparently, native protein structures have evolved intrinsic resistance to oxidation since perfectly folded proteins are, by large most robust. Here we explore the structural basis of protein resistance to radiation-induced oxidation using chicken egg white lysozyme in the native and misfolded form. We study the differential resistance to oxidative damage of six different parts of native and misfolded lysozyme by a targeted tandem/mass spectrometry approach of its tryptic fragments. The decay of the amount of each lysozyme fragment with increasing radiation dose is found to be a two steps process, characterized by a double exponential evolution of their amounts: the first one can be largely attributed to oxidation of specific amino acids, while the second one corresponds to further degradation of the protein. By correlating these results to the structural parameters computed from molecular dynamics (MD simulations, we find the protein parts with increased root-mean-square deviation (RMSD to be more susceptible to modifications. In addition, involvement of amino acid side-chains in hydrogen bonds has a protective effect against oxidation Increased exposure to solvent of individual amino acid side chains correlates with high susceptibility to oxidative and other modifications like side chain fragmentation. Generally, while none of the structural parameters alone can account for the fate of peptides during radiation, together they provide an insight into the relationship between protein structure and susceptibility to oxidation.

  6. In silico study of interaction between rice proteins enhanced disease ...

    Indian Academy of Sciences (India)

    EDS1 interacts with its positive co-regulator phytoalexin deficient 4 (PAD4), resulting in mobilization of the salicylic acid defence pathway. Limited information regarding this interaction in rice is available. To study this interaction, a model of EDS1 and PAD4 proteins from rice was generated and validated with Accelrys DS ...

  7. Reference values for serum protein and electrolyte study from Rwanda

    African Journals Online (AJOL)

    Objective: To estimate reference values of serum proteins and electrolytes in a student population in Butare, Rwanda (altitude: 1768 m; barometric pressure: 629 mm Hg). Design: A laboratory based cross-sectional study. Setting: The units of physiology and clinical chemistry, department of medical biology, Butare University ...

  8. Study of total seed storage protein in indigenous Brassica species ...

    African Journals Online (AJOL)

    hope&shola

    2010-11-08

    Nov 8, 2010 ... presented in Figures 1, 2 and 3 showed close relation- ship among these studied accessions, while the diffe- .... Dendrogram showing the relationship between different protein types in indigenous brassica species based on ... Bangladesh, Japan and China. Similarly, Munazza et al. (2009) evaluated 30 ...

  9. Instrumental resolution effects in neutron scattering studies of protein dynamics

    Science.gov (United States)

    Nickels, Jonathan D.

    2013-10-01

    In this study, the dynamics of Green Fluorescent protein (GFP) are analyzed using three neutron scattering spectrometers. We focus on the effect of instrumental energy resolution in the analysis of the elastic incoherent structure factor (EISF) and mean square displacement (MSD). This topic still remains a source of controversy. Our data clearly demonstrate the presence of the resolution effect in the dynamic transition for hydrated protein and the onset of translational motions in hydration water consistent with previous results from quasielastic neutron scattering. The 190 K onset of motions in hydration water observed at ∼1 ns is also consistent with a Tg of hydration water below 190 K.

  10. [Chronic obstructive pulmonary disease (COPD) and the interior environment].

    Science.gov (United States)

    Khayath, N; Qi, S; de Blay, F

    2016-10-01

    In COPD, the risk attributable to smoking is very variable according to published studies. A significant number shows that the risk of COPD in non-smokers is far from negligible. The links between COPD and pollution of the interior environment vary between developed and developing countries. In developing countries, numerous studies have shown a link between COPD and exposure to substances derived from the combustion of biomass fuels, particularly in women where the exposure is the greatest. Nevertheless, a cause and effect relationship has not always been demonstrated. In developed countries, there is no evidence of a role of exposure to domestic interior pollution in the genesis of COPD and interior pollutants such as NO 2  and particulates seem only to aggravate already existing COPD. Further studies are necessary to evaluate their role in COPD and explore the underlying mechanisms. Irritative phenomena could be involved. Copyright © 2016 SPLF. Published by Elsevier Masson SAS. All rights reserved.

  11. Radioisotope techniques in the study of protein metabolism

    International Nuclear Information System (INIS)

    1965-01-01

    The International Atomic Energy Agency (IAEA) held a panel meeting on June 1-5, 1964. The purpose of the panel was to discuss the present status of radioactive tracer techniques for the study of protein metabolism and to suggest ways of extending an co-ordinating the Agency's research programme in this field. The meeting was attended by 13 invited experts from ten different countries, and three representatives of the World Health Organization (WHO). Sessions of the panel were devoted to methods of preparation of labelled proteins and protein-like substances, to techniques of measurement of gastro-intestinal protein absorption and loss and to the clinical applications of these techniques. At each session, working papers were presented by various participants and then discussed in detail. This report gives the full texts of the working papers together with extensive summaries of the discussions and provides a detailed picture of the present situation and likely future developments in this field of work. It is hoped that its publication will be of interest to all concerned with problems of protein metabolism, whether in clinical medicine or the basic medical sciences. 349 refs, figs and tabs

  12. Utilizing Mechanistic Cross-Linking Technology to Study Protein-Protein Interactions: An Experiment Designed for an Undergraduate Biochemistry Lab

    Science.gov (United States)

    Finzel, Kara; Beld, Joris; Burkart, Michael D.; Charkoudian, Louise K.

    2017-01-01

    Over the past decade, mechanistic cross-linking probes have been used to study protein-protein interactions in natural product biosynthetic pathways. This approach is highly interdisciplinary, combining elements of protein biochemistry, organic chemistry, and computational docking. Herein, we described the development of an experiment to engage…

  13. Learning through Nomadic Interiors - Villa Rotonda through the lenses of Heterotopia

    DEFF Research Database (Denmark)

    Hvejsel, Marie Frier; Fisker, Anna Marie

    2015-01-01

    The question of the critical role of our built heritage to the complex and interdisciplinary processes that govern the current development of the built environment define a continuous challenge in interior studies and education: Can a study of the fundamental interior elements of Villa Rotonda fo......-designed in caramelized sugar can create a parallel learning space; an interior that make a utopian space possible....

  14. Deep Interior Mission: Imaging the Interior of Near-Earth Asteroids Using Radio Reflection Tomography

    Science.gov (United States)

    Safaeinili, A.; Asphaug, E.; Rodriquez, E.; Gurrola, E.; Belton, M.; Klaasen, K.; Ostro, S.; Plaut, J.; Yeomans, D.

    2005-01-01

    materials that we are likely to encounter, from undifferentiated to highly evolved. The 5-15 MHz radar is capable of probing more primitive bodies (e.g. comets or C-types) that may be available given other launch schedules. 5 MHz radar easily penetrates, with the required SNR , greater than 1 km of basalt (a good analog for Nyx). Basalt has a greater loss tangent than expected for most asteroids, although iron-rich M-types are probably not appropriate targets. 15 MHz radar penetrates the outer approximately 100 m of rocky 1 km asteroids and the deep interiors of comets. Laboratory studies of the most common NE0 materials expected (S-, C- and V-type meteorite analogs) will commence in 2005.

  15. Interior design of the lunar outpost

    Science.gov (United States)

    Kennedy, Kriss J.

    1990-01-01

    This paper is part of an ongoing study on the interior design of a lunar outpost habitat facility. The concept presented represents the work done up to and including August 1989. This concept is part of NASA's ongoing effort to explore alternative options for planet surface systems habitation. Results of a volume analog study to determine the required pressurized volume are presented along with an internal layout of the habitat facility. The concept presented in this paper is a constructible lunar habitat that provides a living and working environment for a crew of 12. It is a 16-m diameter spherical pneumatic structure which contains 2145 cubic meters of volume. Five levels of living and working areas make up the 742 sq m of floor space. A 2-m vertical circulation shaft at the center allows for transfer of crew and equipment.

  16. Study of the proteins in the defatted flour and protein concentrate of baru nuts (Dipteryx alata Vog

    Directory of Open Access Journals (Sweden)

    Rita de Cássia Avellaneda Guimarães

    2012-09-01

    Full Text Available Baru (Dipteryx alata Vog. is an abundant legume in the Brazilian Savanna. Its nuts can be exploited sustainably using its protein and lipid fractions. This study aimed to analyze the proteins of the nuts present in the defatted flour and protein concentrate in terms of their functional properties, the profile of their fractions, and the in vitro digestibility. The flour was defatted with hexane and extracted at the pH of higher protein solubility to obtain the protein concentrate. The electrophoretic profile of the protein fractions was evaluated in SDS-PAGE gel. The functional properties of the proteins indicate the possibility of their use in various foods, like soybeans providing water absorption capacity, oil absorption capacity, emulsifying properties, and foamability. Globulins, followed by the albumins, are the major fractions of the flour and protein concentrate, respectively. Digestibility was greater for the concentrate than for the defatted flour.

  17. Um estudo sobre a utilização de sistemas, programas e ferramentas da qualidade em empresas do interior de São Paulo A study on the use of quality systems, programs and tools in companies of interior of São Paulo State

    Directory of Open Access Journals (Sweden)

    José Augusto de Oliveira

    2011-01-01

    Full Text Available O desenvolvimento e implantação de sistemas de gestão da qualidade e o uso de programas e ferramentas da qualidade são algumas das opções mais utilizadas pelos gestores para aumentar a competitividade de suas empresas. Nesse contexto, o objetivo deste artigo é apresentar o resultado de uma pesquisa tipo survey em que se verificaram e analisaram as principais características do processo de certificação ISO 9001, seus benefícios, suas dificuldades e quais programas e ferramentas da qualidade são utilizados em 236 empresas do interior do Estado de São Paulo. A pesquisa revelou que a certificação ISO 9001 gera benefícios significativos às organizações, tais como: melhoria dos processos internos e nos seus produtos; aumento da satisfação dos clientes; diminuição do número de não conformidades e de devoluções; aumento da produtividade e do lucro; melhoria no gerenciamento dos recursos e valorização da imagem da empresa no mercado. Ela também ratificou a importância da utilização dos programas e ferramentas da qualidade como forma de as empresas se adequarem melhor aos requisitos da norma ISO 9001. As dificuldades de desenvolvimento e implantação desses sistemas não se confirmaram para a amostra pesquisada. Apenas a resistência à mudança, dentre todas apresentadas, mereceu destaque para os pesquisados.The development and implementation of quality management systems and the use of quality tools and programs are some of the most widely used options by managers to increase the competitiveness of their companies. Thus, the goal of this paper is to present the result of a research type survey which analyzed the main characteristics of the ISO 9001 certification process, its benefits and difficulties and which quality programs and tools are used in 236 company headquartered in the interior of São Paulo State. The survey showed that the ISO 9001 certification generates significant benefits to organizations, such as

  18. Black Hole Interior in Quantum Gravity.

    Science.gov (United States)

    Nomura, Yasunori; Sanches, Fabio; Weinberg, Sean J

    2015-05-22

    We discuss the interior of a black hole in quantum gravity, in which black holes form and evaporate unitarily. The interior spacetime appears in the sense of complementarity because of special features revealed by the microscopic degrees of freedom when viewed from a semiclassical standpoint. The relation between quantum mechanics and the equivalence principle is subtle, but they are still consistent.

  19. Interior operators and topological connectedness | Castellini ...

    African Journals Online (AJOL)

    A categorical notion of interior operator is used in topology to define connectedness and disconnectedness with respect to an interior operator. A commutative diagram of Galois connections is used to show a relationship between these notions and Arhangelskii and Wiegandt's notions of connectedness and ...

  20. Theoretical and computational studies in protein folding, design, and function

    Science.gov (United States)

    Morrissey, Michael Patrick

    2000-10-01

    In this work, simplified statistical models are used to understand an array of processes related to protein folding and design. In Part I, lattice models are utilized to test several theories about the statistical properties of protein-like systems. In Part II, sequence analysis and all-atom simulations are used to advance a novel theory for the behavior of a particular protein. Part I is divided into five chapters. In Chapter 2, a method of sequence design for model proteins, based on statistical mechanical first-principles, is developed. The cumulant design method uses a mean-field approximation to expand the free energy of a sequence in temperature. The method successfully designs sequences which fold to a target lattice structure at a specific temperature, a feat which was not possible using previous design methods. The next three chapters are computational studies of the double mutant cycle, which has been used experimentally to predict intra-protein interactions. Complete structure prediction is demonstrated for a model system using exhaustive, and also sub-exhaustive, double mutants. Nonadditivity of enthalpy, rather than of free energy, is proposed and demonstrated to be a superior marker for inter-residue contact. Next, a new double mutant protocol, called exchange mutation, is introduced. Although simple statistical arguments predict exchange mutation to be a more accurate contact predictor than standard mutant cycles, this hypothesis was not upheld in lattice simulations. Reasons for this inconsistency will be discussed. Finally, a multi-chain folding algorithm is introduced. Known as LINKS, this algorithm was developed to test a method of structure prediction which utilizes chain-break mutants. While structure prediction was not successful, LINKS should nevertheless be a useful tool for the study of protein-protein and protein-ligand interactions. The last chapter of Part I utilizes the lattice to explore the differences between standard folding, from

  1. Structure and composition of giant planet interiors

    International Nuclear Information System (INIS)

    Hubbard, W.B.

    1989-01-01

    In the simplest model of a Jovian planet atmosphere, the atmospheric abundances are identical to the bulk interior abundances, except as modified by atmospheric condensation processes. This model is now known to be generally inadequate, on the basis of comparisons between detailed atmospheric composition measurements and (less-detailed) determinations of interior composition. The latter are primarily deduced by integrating high-pressure equations of state of plausible constituents to obtain interior models which satisfy observational constraints such as mass, radius, gravitational moments, luminosity and age. This chapter reviews the status of discrepancies between such determinations of interior and atmospheric composition, and reviews possible explanations via interior processes such as hydrogen-helium immiscibility and phase transitions in major constituents. We discuss the proposed structure of the core, mantle and deep atmosphere for each of the four giant planets

  2. Etnoteorias parentais: um estudo com mães residentes no interior e na capital de Santa Catarina Parental ethnotheories: a study with mothers living in the capital and countryside of Santa Catarina State

    Directory of Open Access Journals (Sweden)

    Samira Mafioletti Macarini

    2010-04-01

    Full Text Available O estudo teve como objetivo investigar etnoteorias parentais em mães residentes na capital e interior de Santa Catarina. Foram aplicadas escalas de crenças sobre práticas de cuidado, metas de socialização e alocentrismo familiar em 50 mães de cada contexto cultural. Os resultados na capital indicaram predomínio de elementos autônomo-relacionais em práticas e alocentrismo familiar, enquanto que em termos de metas, as mães valorizaram a autonomia da criança. No interior, no que se refere a metas de socialização e alocentrismo familiar, foram identificados aspectos relacionais. Contudo, em termos de crenças sobre práticas de criação, constatou-se maior valorização da autonomia. Concluiu-se que ambos os contextos caracterizam-se por um modelo de self autônomo-relacional, embora com diferentes ênfases de acordo com a dimensão investigada.The aim of this study was to investigate parental ethnotheories of mothers living in the capital city and in the countryside of Santa Catarina State. In each cultural environment, fifty mothers were interviewed based on scales that evaluated their beliefs about childrearing practices, socialization goals and degree of familism. Results from the capital demonstrated a predominance of autonomous-related elements for practices and familism, whereas in terms of socialization goals, mothers valued the autonomy of the child. In the countryside, relational aspects were identified for socialization goals and familism. However, for beliefs about childrearing practices it has been noted emphasis on autonomy. The conclusion was that both contexts are characterized by an autonomous-related self, although with different emphases according to the dimension investigated.

  3. Study on the total proteins and main protein fractions in rabbits experimentally infected with Staphylococcus aureus

    Directory of Open Access Journals (Sweden)

    T. M. Georgieva

    2017-03-01

    Full Text Available Infections with Staphylococcus aureus are a common cause which can induce severe skin infections in rabbits leading to important economic losses. The present study was conducted to evaluate the changes in the concentrations of total protein, albumin, globulin, fibrinogen, and albumin/globulin ratio during S. aureus infection using a model for experimental infection of rabbits. The experiment was carried out on 13 rabbits at the age of 3 months. Infection was induced by inoculation of 7 rabbits by100 μL of bacterial suspension of a field S. aureus strain (density: 8х108 cfu/mL and 6 other rabbits were not treated (controls. Blood samples for principal protein analysis were collected before (0 h and at 24, 48 and72 h on day 7, 14, and 21 after infection. Total protein level showed little changes in the experimental group. The concentration of albumin decreased in the experimental group since 32.2±2.30 g/L to 27.3±1.9g/L. The serum level of globulins rose significantly (P<0.05 in the experimental group and slightly in the control group. Albumin/globulin ratio was lowered and significantly different on day 4 (P<0.01 and on day 7 (P<0.001. The concentration of fibrinogen was used as an acute phase protein with aim to confirm the incidence of infection. In parallel, rectal temperature and skin lesions (abscesses were recorded. In all infected animals, formation of abscess due to the proliferation of the inoculated strain was observed within 48-96 h following the bacterial inoculation and these lesions have gradually extended leading to purulent exudates several days after and sometimes to secondary abscesses in surrounding muscles.

  4. Exploring the Effectiveness of Blended Learning in Interior Design Education

    Science.gov (United States)

    Afacan, Yasemin

    2016-01-01

    This study explores how blended learning can contribute to interior design students' learning outcomes, their engagement with non-studio courses and affect their learning achievements. Within the framework of the study, a blended learning experience was carried out in "IAED 342 Building Performance" module at Bilkent University, Turkey.…

  5. The Neutron Star Interior Composition Explorer (NICER)

    Science.gov (United States)

    Wilson-Hodge, Colleen A.; Gendreau, K.; Arzoumanian, Z.

    2014-01-01

    The Neutron Star Interior Composition Explorer (NICER) is an approved NASA Explorer Mission of Opportunity dedicated to the study of the extraordinary gravitational, electromagnetic, and nuclear-physics environments embodied by neutron stars. Scheduled to be launched in 2016 as an International Space Station payload, NICER will explore the exotic states of matter, using rotation-resolved spectroscopy of the thermal and non-thermal emissions of neutron stars in the soft (0.2-12 keV) X-ray band. Grazing-incidence "concentrator" optics coupled with silicon drift detectors, actively pointed for a full hemisphere of sky coverage, will provide photon-counting spectroscopy and timing registered to GPS time and position, with high throughput and relatively low background. The NICER project plans to implement a Guest Observer Program, which includes competitively selected user targets after the first year of flight operations. I will describe NICER and discuss ideas for potential Be/X-ray binary science.

  6. Planetary Interior Modeling and Tectonic Implications

    Science.gov (United States)

    Phillips, R. J.

    1985-01-01

    A technique is described for estimating spectral admittance functions using Pioneer Venus gravity and topography data. These admittance functions provide a convenient means to carry out systematic geophysical studies over much of the surface of Venus with a variety of interior density models. The admittance functions are calculated in the observation space of line-of-sight (LOS) gravity. Both closed and open system petrological models are considered for the Tharsis region of Mars. An analytic theory for isostatic compensation on one-plate planet is applied, including membrane stresses in the lithosphere, self gravitation, and rotational ellipticity. Crucial to this stress modeling and also to the petrological modeling is the observation that the earliest fracturing seen in the Tharsis region is associated with isostatic stresses. The radial fractures that extend far from Tharsis are associated with an additional and/or a completely different mechanism.

  7. Temperature dependent conformation studies of Calmodulin Protein using Molecular Dynamics

    Science.gov (United States)

    Aneja, Sahil; Bhartiya, Vivek Kumar; Negi, Sunita

    2016-10-01

    Calmodulin (CaM) protein plays a very crucial role in the calcium signaling inside the eukaryotic cell structure [1, 2]. It can also bind to other proteins/targets and facilitate various activities inside the cell [3, 4]. Temperature dependent conformation changes in the CaM protein are studied with extensive molecular dynamics simulations. The quantitative comparison of simulation data with various forms of experimental results probing different aspects of the folding process can facilitate robust assessment of the accuracy of the calculations. It can also provide a detailed structural interpretation for the experimental observations as well as physical interpretation for theory behind different aspects of the experiment. Earlier these kinds of studies have been performed experimentally using fluorescence measurements as in [5]. The calcium bound form of CaM is observed to undergo a reversible conformation change in the range 295-301 K at calcium ion concentration 150 mM. The transition temperature was observed to depend on the calcium ion concentration of the protein. Leap-dynamics approach was used earlier to study the temperature dependent conformation change of CaM [6]. At 290 K, both the N- and C-lobes were stable, at 325 K, the C-lobe unfolds whereas at 360 both the lobes unfold [6]. In this work, we perform molecular dynamics simulations of 100 ns each for the temperatures 325 K and 375 K on the apo form of CaM, 3CLN and 1CFD. A remarkable dependence of the temperature is observed on the overall dynamics of both the forms of the protein as reported in our earlier study [7, 8]. 1CFD shows a much flexible linker as compared to 3CLN whereas the overall dynamics of the lobes mainly N-lobe is observed to be more in later case. Salt bridge formation between the residues 2 (ASP) and 148 (LYS) leads to a more compact form of 1CFD at 325 K. The unfolding of the protein is observed to increase with the increase in the temperature similar to the earlier reported

  8. Virtual Reality as Innovative Approach to the Interior Designing

    Directory of Open Access Journals (Sweden)

    Kaleja Pavol

    2017-06-01

    Full Text Available We can observe significant potential of information and communication technologies (ICT in interior designing field, by development of software and hardware virtual reality tools. Using ICT tools offer realistic perception of proposal in its initial idea (the study. A group of real-time visualization, supported by hardware tools like Oculus Rift HTC Vive, provides free walkthrough and movement in virtual interior with the possibility of virtual designing. By improving of ICT software tools for designing in virtual reality we can achieve still more realistic virtual environment. The contribution presented proposal of an innovative approach of interior designing in virtual reality, using the latest software and hardware ICT virtual reality technologies

  9. Computational protein biomarker prediction: a case study for prostate cancer

    Directory of Open Access Journals (Sweden)

    Adam Bao-Ling

    2004-03-01

    Full Text Available Abstract Background Recent technological advances in mass spectrometry pose challenges in computational mathematics and statistics to process the mass spectral data into predictive models with clinical and biological significance. We discuss several classification-based approaches to finding protein biomarker candidates using protein profiles obtained via mass spectrometry, and we assess their statistical significance. Our overall goal is to implicate peaks that have a high likelihood of being biologically linked to a given disease state, and thus to narrow the search for biomarker candidates. Results Thorough cross-validation studies and randomization tests are performed on a prostate cancer dataset with over 300 patients, obtained at the Eastern Virginia Medical School using SELDI-TOF mass spectrometry. We obtain average classification accuracies of 87% on a four-group classification problem using a two-stage linear SVM-based procedure and just 13 peaks, with other methods performing comparably. Conclusions Modern feature selection and classification methods are powerful techniques for both the identification of biomarker candidates and the related problem of building predictive models from protein mass spectrometric profiles. Cross-validation and randomization are essential tools that must be performed carefully in order not to bias the results unfairly. However, only a biological validation and identification of the underlying proteins will ultimately confirm the actual value and power of any computational predictions.

  10. Sequence- and interactome-based prediction of viral protein hotspots targeting host proteins: a case study for HIV Nef.

    Directory of Open Access Journals (Sweden)

    Mahdi Sarmady

    Full Text Available Virus proteins alter protein pathways of the host toward the synthesis of viral particles by breaking and making edges via binding to host proteins. In this study, we developed a computational approach to predict viral sequence hotspots for binding to host proteins based on sequences of viral and host proteins and literature-curated virus-host protein interactome data. We use a motif discovery algorithm repeatedly on collections of sequences of viral proteins and immediate binding partners of their host targets and choose only those motifs that are conserved on viral sequences and highly statistically enriched among binding partners of virus protein targeted host proteins. Our results match experimental data on binding sites of Nef to host proteins such as MAPK1, VAV1, LCK, HCK, HLA-A, CD4, FYN, and GNB2L1 with high statistical significance but is a poor predictor of Nef binding sites on highly flexible, hoop-like regions. Predicted hotspots recapture CD8 cell epitopes of HIV Nef highlighting their importance in modulating virus-host interactions. Host proteins potentially targeted or outcompeted by Nef appear crowding the T cell receptor, natural killer cell mediated cytotoxicity, and neurotrophin signaling pathways. Scanning of HIV Nef motifs on multiple alignments of hepatitis C protein NS5A produces results consistent with literature, indicating the potential value of the hotspot discovery in advancing our understanding of virus-host crosstalk.

  11. An overview of protein identification studies in cassava.

    Science.gov (United States)

    Batista de Souza, Cláudia R; dos Reis, Sávio P; Castelo Branco Carvalho, Luiz J

    2015-01-01

    Cassava (Manihot esculenta Crantz) belongs to the Euphorbiaceae family and is originated from the Southern Amazon basin. The storage root is the most important product of cassava as food for more than 800 million people in Africa, Asia and Latin America. In this review, we present a retrospective of studies aiming the identification of cassava proteins, starting from the first investigations using SDS-PAGE and classical two-dimensional gel electrophoresis (2DE) to recent studies with advanced technologies such as high-resolution 2DE, mass spectrometry, and iTRAQ-based analysis that have contributed for characterization of cassava proteome. Several cassava proteins have been identified, including those involved in the storage root formation and post-harvest physiological deterioration processes.

  12. Photo-CIDNP studies of amino acids and proteins

    CERN Document Server

    Lopez, J J

    2001-01-01

    half. Chapter 6: CIDNP in Micellar Solutions The presence of detergent, below and above the critical micelle concentration, is shown to affect CIDNP intensities, due to electrostatic interactions between charged dye and detergent molecules. In the last part of this chapter, photo-CIDNP experiments with the membrane protein gramicidin A, incorporated in detergent and lipid micelles, are described. Chapter 7: CIDNP Study of the Tryptophan Radical CIDNP spectra are characteristic of the transient radical intermediates which are generated during the flash photolysis. Here, the tryptophan radicals g-factor is estimated with the help of the CIDNP dependence on the magnetic field in which the flash-photolysis takes place. The ultimate aim of the research described in this thesis is the development of methods with which ope may study the structure and function of proteins on a molecular level. This is done with the help of a combination of NMR (Nuclear Magnetic Resonance) and flash photolysis, in which light initiate...

  13. Studies of Fibronectin-Binding Proteins of Streptococcus equi

    OpenAIRE

    Lannergård, Jonas; Flock, Margareta; Johansson, Staffan; Flock, Jan-Ingmar; Guss, Bengt

    2005-01-01

    Streptococcus equi subsp. equi is the causative agent of strangles, a disease of the upper respiratory tract in horses. The initiation of S. equi subsp. equi infection is likely to involve cell surface-anchored molecules mediating bacterial adhesion to the epithelium of the host. The present study describes the cloning and characterization of FNEB, a fibronectin-binding protein with cell wall-anchoring motifs. FNEB can thus be predicted as cell surface located, contrary to the two previously ...

  14. Protein-containing PEGylated cubosomic particles: freeze-fracture electron microscopy and synchrotron radiation circular dichroism study.

    Science.gov (United States)

    Angelov, Borislav; Angelova, Angelina; Papahadjopoulos-Sternberg, Brigitte; Hoffmann, Søren V; Nicolas, Valérie; Lesieur, Sylviane

    2012-07-05

    The purpose of this work is to investigate the entrapment of protein molecules in cubosomic nanocarriers that are sterically stabilized by an amphiphilic poly(ethylene glycol) (PEG) derivative. Toward that aim, the mechanism of fragmentation of a self-assembled, PEGylated cubic lipid phase into nanoparticles (NPs) is investigated in excess aqueous medium. The molar ratio between the cubic-phase-forming lipid monoolein (MO) and its PEGylated derivative (MO-PEG(2000)) is selected as to favor the formation of inverted-type liquid-crystalline (LC) structures (permitting one to reveal the stages of the fragmentation and bicontinuous membrane NP assembly process) rather than a phase transformation to lamellar or micellar phases. The PEGylated amphiphile considerably affects the interfacial curvature of the cubic lipid membrane and, under agitation, contributes to the fragmentation of the bicontinuous cubic lattice into NPs. Freeze-fracture electron microscopy (FF-EM), quasi-elastic light scattering (QELS), and confocal laser scanning fluorescence microscopy (CLSFM) are applied for determination of the NPs' sizes, inner organization, and stability with regard to a thermal stimulus. Entrapped protein molecules can essentially stabilize the cubosomic particles (proteocubosomes), which display well-defined inner organization of nanochannels in their freeze-fracture planes. The protein α-chymotrypsinogen A is studied in proteocubosome dispersions by means of far-UV synchrotron radiation circular dichroism (SRCD) spectroscopy. It is suggested that the protein molecules are entrapped in the interior of the PEGylated cubosomes via a "nanopockets" mechanism. The LC PEGylated proteocubosomes offer new possibilities for investigation of protein loading in sterically stabilized ("Stealth") nanostructured lipid carriers, which differ from Poloxamer-stabilized isasomes.

  15. Quasi-elastic neutron scattering studies of protein dynamics

    International Nuclear Information System (INIS)

    Rorschach, H.E.

    1993-01-01

    Results that shed new light on the study of protein dynamics were obtained by quasi-elastic neutron scattering. The triple axis instrument H-9 supplied by the cold source was used to perform a detailed study of the quasi-elastic spectrum and the Debye-Waller factor for trypsin in powder form, in solution, and in crystals. A preliminary study of myoglobin crystals was also done. A new way to view the results of quasi-elastic scattering experiments is sketched, and the data on trypsin are presented and analyze according to this new picture

  16. Green Fluorescent Protein as a Model for Protein Crystal Growth Studies

    Science.gov (United States)

    Agena, Sabine; Smith, Lori; Karr, Laurel; Pusey, Marc

    1998-01-01

    Green fluorescent protein (GFP) from jellyfish Aequorea Victoria has become a popular marker for e.g. mutagenesis work. Its fluorescent property, which originates from a chromophore located in the center of the molecule, makes it widely applicable as a research too]. GFP clones have been produced with a variety of spectral properties, such as blue and yellow emitting species. The protein is a single chain of molecular weight 27 kDa and its structure has been determined at 1.9 Angstrom resolution. The combination of GFP's fluorescent property, the knowledge of its several crystallization conditions, and its increasing use in biophysical and biochemical studies, all led us to consider it as a model material for macromolecular crystal growth studies. Initial preparations of GFP were from E.coli with yields of approximately 5 mg/L of culture media. Current yields are now in the 50 - 120 mg/L range, and we hope to further increase this by expression of the GFP gene in the Pichia system. The results of these efforts and of preliminary crystal growth studies will be presented.

  17. STUDY OF ANEMIA AMONG PROTEIN ENERGY MALNOURISHED CHILDREN IN MYSORE

    Directory of Open Access Journals (Sweden)

    Nayana

    2015-02-01

    Full Text Available INTRODUCTION AND OBJECTIVES : Anemia in Protein energy malnutrition (PEM is common and its pathogenesis is multifactorial. Since the clinico - pathological patterns are reflected by their underlying etiopathogenic factors, it is important to study the associated morbidity and mortalit y and to establish their causes for an effective management. The purpose of the present study is to determine the prevalence, patterns, clinico - pathological and morphological types of anemia in protein energy malnutrition children. The objectives of the st udy are: (1 To study the clinico - pathological and morphological patterns of anemia in PEM children of age group 6 month – 5 years. (2 To assess the resultant morbidity and mortality. (3 To determine the ideal parameter for iron deficiency anemia. METHOD S: This study was conducted on 75 clinically diagnosed Protein energy malnutrition patients of age group 6 months to 5 years. Detailed clinical history elicitation and thorough clinical examination was performed. Peripheral smears of these patients were ex amined. The complete hemogram including reticulocyte count was done. The special investigations like bone marrow study, Hb electrophoresis, iron studies and stool examination were done whenever required. RESULTS: In our study, anemia in PEM affected female population more than the males of age 36 - 47 months. Most of children had Grade III PEM and Microcytic hypochromic anemia was most prevalent. Most of the children had Iron deficiency anemia. This study also indicated that Serum iron assay and TIBC are the better indicators of iron deficiency anemia in patients with PEM and it is the investigation of choice when compared to serum ferritin as it gets falsely elevated in these patients with infections confirmed by elevated CRP level. INTERPRETATION AND CONCLUS ION: Malnutrition, Infection and Anemia show a synergistic relationship. So it necessitates prompt screening and early diagnosis through proper

  18. Interior Design Based on Forough Farrokhzad Poetry

    Directory of Open Access Journals (Sweden)

    Mahsa Sanami

    2018-03-01

    Full Text Available The main purpose of this study is to correlate between art, literature, architect and visualization to translate the emotions and aspirations embodied in a well-known poet such as Forough Farrokhzad. Forough Farrokhzad widely regarded as a famous Iranian poet and an advocate for women’s liberation and independence. She wrote during a time when Iranian women were facing extensive discrimination and prejudice. Many of her works are rich in feminist related aspects of Iranian women. By visualization of Forough’s inner feelings, one can see a great revaluation in society towards women feelings and emotions. Like any other human, poets and artist both have thoughts and dreams rich in colors and words capsulizing their imaginary world in possible dreams which are all related to each person’s personality, culture, environment and etc. One of the ways to understand a poet is to understand the depth of his/her thoughts through his/her poems. Thus the main purpose of this research is to review interior design based on in depth analysis of related poems. Psychoanalysis of symbols, themes and colors used in poems, can be used to supplement words in extracting symptoms and energy depicting the poet inner feelings and imaginations when designing. The results of the discussing symbols and colors used by Forough in most of her poems, indicate her interest in life, death, love, society, intellectuality and philosophy. Finally the researchers through usage of visual effects and pictures used in her designs tries to assist the viewers to understand and feel the poet’s emotions and passions for life at the time of creating the poems. Thus, it can be assumed that the interior design is based on poetry rich in motion and dynamism.

  19. Storage study and quality evaluation of coconut protein powder.

    Science.gov (United States)

    Naik, Aduja; Prakash, Maya; R, Ravi; Raghavarao, Ksms

    2013-11-01

    Coconut skim milk and insoluble protein are 2 major byproducts in the production of virgin coconut oil. Coconut skim milk was homogenized along with insoluble protein and spray dried to obtain a value-added product, namely, coconut protein powder (CPP). This study deals with the storage study of CPP under different conditions (refrigerated [control], ambient and accelerated). CPP samples were withdrawn periodically at designated intervals of 15 d for accelerated and control, and 30 d for ambient condition. CPP stored at different conditions exhibited marginal moisture uptake (by 0.74 % w/w for control, 0.76 % w/w for ambient, and 1.26 % w/w for accelerated condition) and as a result, had very little effect on the functional properties of the powder. Withdrawn CPP was tested for sensory quality aspects and subjected to instrumental analysis as well. Withdrawn CPP was incorporated as a milk substitute in dessert (Kheer). Quantitative descriptive analysis of the powder and product (Kheer) showed no significant difference in attributes of CPP during the storage period of 2 mo. Electronic nose analysis revealed that CPP samples were not much different with respect to aroma pattern matching, respectively. © 2013 CSIR-Central Food Technological Research Institute.

  20. Study of the interactions between naphthoquinone and protein

    International Nuclear Information System (INIS)

    Zhang Zhaoxia; Zhao Hongwei; Zhu Hongping; Ge Min; Hao Shumei; Wang Wenfeng; Li Wenxin

    2006-01-01

    Quinones are found in probably all respiring animal and plant cells. They are widely used as anticancer, antibacterial or antimalarial drugs and as fungicides. Over the last several decades, much attention has been paid to quinone compounds since they play important roles as electron and hydrogen atom acceptors in both chemistry and biochemistry. It has been known that the reactive states for the photoreduction of quinones are triplets. As for the photochemistry of simple quinones, such as benzoquinones (BQ), anthraquinones (AQ) and naphthoquinone (NQ), a large number of studies on their photochemical properties and elementary photoreactions. However little research on the protein electron transfer of triplet naphthoquinones ( 3 NQ * ) in organic solvents has been reported using laser flash photolysis. We have studied interactions between 3 NQ * and lysozyme in a mixture solution of acetonitrile and H 2 O (3:1, v/v) using 355 nm laser flash photolysis technique combined with the sample being irradiated in steady-state. Electron transfer reaction between 3 NQ * and lysozyme was found, and the rate constant was determined. On the other hand, the results of electrophoresis suggested that protein can be damaged induced by NQ irradiated with UVA light. It was indicated that the mechanisms and products of oxidative damage were relative to the concentration of riboflavin, the time of irradiation and the ambience. Mechanisms of photosensitive damage of protein were proposed. (authors)

  1. Substrate-Bound Protein Gradients to Study Haptotaxis

    Directory of Open Access Journals (Sweden)

    Sebastien G. Ricoult

    2015-03-01

    Full Text Available Cells navigate in response to inhomogeneous distributions of extracellular guidance cues. The cellular and molecular mechanisms underlying migration in response to gradients of chemical cues have been investigated for over a century. Following the introduction of micropipettes and more recently microfluidics for gradient generation, much attention and effort was devoted to study cellular chemotaxis, which is defined as guidance by gradients of chemical cues in solution. Haptotaxis, directional migration in response to gradients of substrate-bound cues, has received comparatively less attention; however it is increasingly clear that in vivo many physiologically relevant guidance proteins – including many secreted cues – are bound to cellular surfaces or incorporated into extracellular matrix and likely function via a haptotactic mechanism. Here, we review the history of haptotaxis. We examine the importance of the reference surface, the surface in contact with the cell that is not covered by the cue, which forms a gradient opposing the gradient of the protein cue and must be considered in experimental designs and interpretation of results. We review and compare microfluidics, contact-printing, light patterning and 3D fabrication to pattern substrate-bound protein gradients in vitro, and focus on their application to study axon guidance. The range of methods to create substrate-bound gradients discussed herein make possible systematic analyses of haptotactic mechanisms. Furthermore, understanding the fundamental mechanisms underlying cell motility will inform bioengineering approaches to program cell navigation and recover lost function.

  2. Moessbauer spectroscopic studies of iron-storage proteins

    Energy Technology Data Exchange (ETDEWEB)

    St. Pierre, T.G.

    1986-01-01

    /sup 57/Fe Moessbauer spectroscopy was used to study iron storage proteins. Various cryostats and a superconducting magnet were used to obtain sample environment temperatures from 1.3 to 200K and applied magnetic fields of up to 10T. The Moessbauer spectra of ferritins isolated from iron-overloaded human spleen, limpet (Patella vulgata), giant limpet (Patella laticostata) and chiton (Clavarizona hirtosa) hemolymph, and bacterial (Pseudomonas aeruginosa) cells are used to gain information on the magnetic ordering- and superparamagnetic transition temperatures of the microcrystalline cores of the proteins. Investigations were made about the cause of the difference in the magnetic anisotropy constants of the cores of iron-overloaded human spleen ferritin and hemosiderin. Livers taken from an iron-overloaded hornbill and artificially iron-loaded rats showed no component with a superparamagnetic transition temperature approaching that of the human spleen hemosiderin.

  3. Systematic study of plasma and serum proteins in the pig

    International Nuclear Information System (INIS)

    Daburon, F.; Nizza, P.; Hatchikian, C.; Schmidt, J.-P.

    1966-01-01

    This work has been carried out in the framework of the determination of the physiological constants of a normal pig. The aim was to study the serum and plasma proteins of this animal species, the ultimate object being to discover whether the qualitative and quantitative changes in these proteins can make a significant contribution to the establishment of a biological dosimetry for irradiated pigs. The serum and plasma from a normal pig were analyzed first by various simple electrophoretic methods and then by immuno-electrophoresis. As a result of the particular characteristics of pig serum we have gradually been led to make numerous modifications to the techniques used for human serums or for those of small laboratory animals. Much careful work and patience were required in order to obtain reproducible results. (authors) [fr

  4. Digital Interior Design by Stailia Design Oy

    OpenAIRE

    Lindroos, Jaana

    2017-01-01

    The objective of the thesis work is to research and create a web based service in a field of interior design. With my project, I am hoping to find out whether this kind of web service in the field of interior design can work in general and that the process together with the actual order form on internet is smooth from both customer and company point of view. The company has interior design related services but none entirely executed on the web. The target is to create a totally new service/pr...

  5. Computer vision based room interior design

    Science.gov (United States)

    Ahmad, Nasir; Hussain, Saddam; Ahmad, Kashif; Conci, Nicola

    2015-12-01

    This paper introduces a new application of computer vision. To the best of the author's knowledge, it is the first attempt to incorporate computer vision techniques into room interior designing. The computer vision based interior designing is achieved in two steps: object identification and color assignment. The image segmentation approach is used for the identification of the objects in the room and different color schemes are used for color assignment to these objects. The proposed approach is applied to simple as well as complex images from online sources. The proposed approach not only accelerated the process of interior designing but also made it very efficient by giving multiple alternatives.

  6. Possibilities to improve the aircraft interior comfort experience

    NARCIS (Netherlands)

    Vink, P.; Bazley, C.; Kamp, I.; Blok, M.

    2012-01-01

    Comfort plays an increasingly important role in the interior design of airplanes. Although ample research has been conducted on airplane design technology, only a small amount of public scientific information is available addressing the passenger's opinion. In this study, more than 10,000 internet

  7. Interior design of a two-dimensional semiclassical black hole

    International Nuclear Information System (INIS)

    Levanony, Dana; Ori, Amos

    2009-01-01

    We look into the inner structure of a two-dimensional dilatonic evaporating black hole. We establish and employ the homogenous approximation for the black-hole interior. Two kinds of spacelike singularities are found inside the black hole, and their structure is investigated. We also study the evolution of spacetime from the horizon to the singularity.

  8. Improving FCS Accountability: Increasing STEM Awareness with Interior Design Modules

    Science.gov (United States)

    Etheredge, Jessica; Moody, Dana; Cooper, Ashley

    2014-01-01

    This paper demonstrates ways in which family and consumer sciences (FCS) educators can explore more opportunities to integrate Science, Technology, Engineering, and Math (STEM) principles into secondary education curriculum. Interior design is used as a case study for creating learning modules that incorporate STEM principles in a creative and…

  9. Group Dynamics in the Interior Design Studio: Student Perceptions

    Science.gov (United States)

    Hill, Caroline

    2008-01-01

    This article presents the findings of a study measuring the classroom climates in collegiate interior design studios and considers these findings within the group dynamics theory framework. Three groups of students completed the College Classroom Environment Scales (CCES) questionnaire. Five of the six CCES subscale F ratios were statistically…

  10. Perceptions of Interior Design Program Chairs Regarding Credentials for Faculty

    Science.gov (United States)

    Miller, Beth R.

    2017-01-01

    The purpose of this study was to determine whether program chairs in interior design have a preferred degree credential for candidates seeking a full-time, tenure-track position or other full-time position at their institution and to determine if there is a correlation between this preference and the program chair's university's demographics,…

  11. Group Projects in Interior Design Studio Classes: Peer Feedback Benefits

    Science.gov (United States)

    Jurado, Juan A.

    2011-01-01

    Group projects have been shown to be effective for providing peer feedback in classrooms. While students in regular enrollment classes benefit from peer feedback, low-enrollment classes face many challenges. This study compares peer feedback effectiveness between two interior design studio classes with different design projects. In one class,…

  12. Interior design of a two-dimensional semiclassical black hole

    Science.gov (United States)

    Levanony, Dana; Ori, Amos

    2009-10-01

    We look into the inner structure of a two-dimensional dilatonic evaporating black hole. We establish and employ the homogenous approximation for the black-hole interior. Two kinds of spacelike singularities are found inside the black hole, and their structure is investigated. We also study the evolution of spacetime from the horizon to the singularity.

  13. The Integration of Interior Architecture Education with Digital Design Approaches

    Science.gov (United States)

    Yazicioglu, Deniz Ayse

    2011-01-01

    It is inevitable that as a result of progress in technology and the changes in the ways with which design is conceived, interior architecture schools should be updated according to these requirements and that new educational processes should be tried out. It is for this reason that the scope and aim of this study have been determined as being the…

  14. Resiliency of small rural communities in the interior Columbia Basin.

    Science.gov (United States)

    Sally. Duncan

    1998-01-01

    As part of the Interior Columbia Basin Ecosystem Management Project, 198 small communities were assessed for their ability to deal with change and the characteristics that contribute to this ability. Scientists conducted on-the-ground studies and had communities assess themselves.The data revealed complex differences, patterns, and underlying relationships....

  15. Effects of N-glycosylation on protein conformation and dynamics: Protein Data Bank analysis and molecular dynamics simulation study.

    Science.gov (United States)

    Lee, Hui Sun; Qi, Yifei; Im, Wonpil

    2015-03-09

    N-linked glycosylation is one of the most important, chemically complex, and ubiquitous post-translational modifications in all eukaryotes. The N-glycans that are covalently linked to proteins are involved in numerous biological processes. There is considerable interest in developments of general approaches to predict the structural consequences of site-specific glycosylation and to understand how these effects can be exploited in protein design with advantageous properties. In this study, the impacts of N-glycans on protein structure and dynamics are systematically investigated using an integrated computational approach of the Protein Data Bank structure analysis and atomistic molecular dynamics simulations of glycosylated and deglycosylated proteins. Our study reveals that N-glycosylation does not induce significant changes in protein structure, but decreases protein dynamics, likely leading to an increase in protein stability. Overall, these results suggest not only a common role of glycosylation in proteins, but also a need for certain proteins to be properly glycosylated to gain their intrinsic dynamic properties.

  16. Simulation studies of protein-induced bilayer deformations, and lipid-induced protein tilting, on a mesoscopic model for lipid bilayers with embedded proteins

    DEFF Research Database (Denmark)

    Venturoli, M.; Smit, B.; Sperotto, Maria Maddalena

    2005-01-01

    in membranes, we considered proteins of different hydrophobic length ( as well as different sizes). We studied the cooperative behavior of the lipid-protein system at mesoscopic time-and lengthscales. In particular, we correlated in a systematic way the protein-induced bilayer perturbation, and the lipid......Biological membranes are complex and highly cooperative structures. To relate biomembrane structure to their biological function it is often necessary to consider simpler systems. Lipid bilayers composed of one or two lipid species, and with embedded proteins, provide a model system for biological...... membranes. Here we present a mesoscopic model for lipid bilayers with embedded proteins, which we have studied with the help of the dissipative particle dynamics simulation technique. Because hydrophobic matching is believed to be one of the main physical mechanisms regulating lipid-protein interactions...

  17. Study on Fusion Protein and Its gene in Baculovirus Specificity

    International Nuclear Information System (INIS)

    Nemr, W.A.H.

    2012-01-01

    Baculoviruses are subdivided into two groups depending on the type of budded virus envelop fusion protein; group I utilized gp64 which include the most of nucleopolyhedroviruses (NPVs), group II utilized F protein which include the remnants of NPVs and all Granuloviruses (GVs). Recent studies reported the viral F protein coding gene as a host cellular sourced gene and may evolutionary acquired from the host genome referring to phylogeny analysis of fusion proteins. Thus, it was deduced that F protein coding gene is species- specific nucleotide sequence related to the type of the specific host and if virus could infect an unexpected host, the resulted virus may encode a vary F gene. In this regard, the present study utilized the mentioned properties of F gene in an attempt to produce a model of specific and more economic wider range granulovirus bio- pesticide able to infect both Spodoptera littoralis and Phthorimaea operculella larvae. Multiple sequence alignment and phylogeny analysis were performed on six members of group II baculovirus, novel universal PCR primers were manually designed from the conserved regions in the alignment graph, targeted to amplify species- specific sequence entire F gene open reading frame (ORF) which is useful in molecular identification of baculovirus in unknown samples. So, the PCR product of SpliGV used to prepare a specific probe for the F gene of this type of virus. Results reflected that it is possible to infect S. littoralis larvae by PhopGV if injected into larval haemocoel, the resulted virus of this infection showed by using DNA hybridization technique to be encode to F gene homologous with the F gene of Spli GV, which is revealed that the resulted virus acquired this F gene sequence from the host genome after infection. Consequently, these results may infer that if genetic aberrations occur in the host genome, this may affect in baculoviral infectivity. So, this study aimed to investigate the effect of gamma radiation at

  18. Autoradiographic study of nuclear protein acetylation during Locust spermiogenesis

    International Nuclear Information System (INIS)

    Bouvier, D.; Chevaillier, P.

    1975-01-01

    Autoradiographic studies, at the light and electron microscope level, demonstrate that spermatid nuclei of the Locust Locusta migratoria incorporate 3 H-acetate, especially during the first stages of spermiogenesis. The highest level of acetate incorporation is observed during stage II of spermiogenesis. During this stage and the following, the spermatid nucleus undergoes a number of structural and chemical modifications: chromatin decondenses and somatic histones are progressively replaced by newly synthesized arginine-rich proteins. Therefore, the higher degree of acetylation of nuclear components coincides with chromatin decondensation and precedes the protein transition occurring in later stages. Cytochemical and autoradiographic tests have been realized so as to localize 3 H-acetate in the nuclear components. Trichloracetic acid was used at various concentrations: the action of hydrochloric acid, pronase and DNase was also tested. The results support the idea that proteins, and among them histones, are the only nuclear components to be acetylated during spermiogenesis. Thus, histone acetylation seems to play an important role in modulating histone-DNA interactions and allowing histone replacement [fr

  19. Interior Design's Role in Educational Specifications.

    Science.gov (United States)

    Keller, Mary Ann

    1986-01-01

    An experienced interior designer, equipped with a well-written educational specification, will specify the best materials and coordinate colors, materials, and furnishings in line with the district's budget. (MLF)

  20. Studies on the interaction of lidocaine with plasma proteins

    Energy Technology Data Exchange (ETDEWEB)

    Adotey, J.

    1985-01-01

    This study sought to quantitate lidocaine's interaction with alpha-1-acid glycoprotein (AAG), human serum albumin (HSA), and AAG in the presence of HSA, and to determine the extent of displacement of lidocaine from its binding site(s) by selected cardiovascular drugs (dipyridamole, disopyramide and quinidine). Since the limited experimental work reported in this area has involved the use of a single lidocaine concentration, this study involved the evaluation of a range of lidocaine concentrations. Lidocaine interaction with plasma proteins (AAG and HSA) was studied at 37/sup 0/C using an isothermal equilibrium dialysis system and /sup 14/C-lidocaine HCl. A dialysis membrane (M.W. cutoff 12,000 to 14,000) separated the two chambers of each dialysis cell. The extent of /sup 14/C-lidocaine dialysis was studied with respect to both drug and protein concentrations. Aliquots of each chamber of each of the cells were subjected to liquid scintillation counting (LSC) analyses for /sup 14/C-lidocaine. The ratio of bound to free (R/F) lidocaine was evaluated as a function of AAG concentration from the LSC data. Scatchard and/or Rosenthal analyses were employed to evaluate n and k values where appropriate. Linear and multiple linear regression analyses of the data were appropriately performed.

  1. Studies on the interaction of lidocaine with plasma proteins

    International Nuclear Information System (INIS)

    Adotey, J.

    1985-01-01

    This study sought to quantitate lidocaine's interaction with alpha-1-acid glycoprotein (AAG), human serum albumin (HSA), and AAG in the presence of HSA, and to determine the extent of displacement of lidocaine from its binding site(s) by selected cardiovascular drugs (dipyridamole, disopyramide and quinidine). Since the limited experimental work reported in this area has involved the use of a single lidocaine concentration, this study involved the evaluation of a range of lidocaine concentrations. Lidocaine interaction with plasma proteins (AAG and HSA) was studied at 37 0 C using an isothermal equilibrium dialysis system and 14 C-lidocaine HCl. A dialysis membrane (M.W. cutoff 12,000 to 14,000) separated the two chambers of each dialysis cell. The extent of 14 C-lidocaine dialysis was studied with respect to both drug and protein concentrations. Aliquots of each chamber of each of the cells were subjected to liquid scintillation counting (LSC) analyses for 14 C-lidocaine. The ratio of bound to free (R/F) lidocaine was evaluated as a function of AAG concentration from the LSC data. Scatchard and/or Rosenthal analyses were employed to evaluate n and k values where appropriate. Linear and multiple linear regression analyses of the data were appropriately performed

  2. Penerapan Interior Branding pada Hotel Yello

    OpenAIRE

    Gunawan, Astri Indrawati

    2017-01-01

    The development of entertainment and tourism in Surabaya has lead to increasing of tourist arrival. This condition makes hotel businesses flourishing. The 3 star hotel is currently the best-selling hotel due to adequate facilities at current economic level. To cope with the competition, many 3 star hotels applied branding in the interior. Interior branding is formed not only from the visual beauty, but rather to the room's atmosphere that contains stories and unique messages to influence the ...

  3. Discovering the interior of black holes

    Science.gov (United States)

    Brustein, Ram; Medved, A. J. M.; Yagi, K.

    2017-12-01

    The detection of gravitational waves (GWs) from black hole (BH) mergers provides an inroad toward probing the interior of astrophysical BHs. The general-relativistic description of the BH interior is that of empty spacetime with a (possibly) singular core. Recently, however, the hypothesis that the BH interior does not exist has been gaining traction, as it provides a means for resolving the BH information-loss problem. Here, we propose a simple method for answering the following question: Does the BH interior exist and, if so, does it contain some distribution of matter or is it mostly empty? Our proposal is premised on the idea that, similar to the case of relativistic, ultracompact stars, any BH-like object whose interior has some matter distribution should support fluid modes in addition to the conventional spacetime modes. In particular, the Coriolis-induced Rossby (r-) modes, whose spectrum is mostly insensitive to the composition of the interior matter, should be a universal feature of such BH-like objects. In fact, the frequency and damping time of these modes are determined by only the object's mass and speed of rotation. The r-modes oscillate at a lower frequency, decay at a slower rate, and produce weaker GWs than do the spacetime modes. Hence, they imprint a model-insensitive signature of a nonempty interior in the GW spectrum resulting from a BH merger. We find that future GW detectors, such as Advanced LIGO with its design sensitivity, have the potential of detecting such r-modes if the amount of GWs leaking out quantum mechanically from the interior of a BH-like object is sufficiently large.

  4. Population genetic studies in the Balkans. I. Serum proteins.

    Science.gov (United States)

    Scheil, H G; Scheffrahn, W; Schmidt, H D; Huckenbeck, W; Efremovska, L; Xirotiris, N

    2001-09-01

    Within a study of the genetics of Southeastern European populations seven serum protein polymorphisms (AMY2, BF, C3, CP, GC, HPA, TF) were examined in three samples of Aromuns (Albania: the village of Andon Poci, province Gjirocaster, Republic of Macedonia: Stip region, Romania: the village Kogalniceanu, province Dobruja) and four reference samples (Albanians: Tirana, Romanians: Constanta and Ploiesti as well as Greeks (Northeastern Greece)). The Aromun samples from Albania and Romania form one separate cluster and the reference samples together with the Aromuns from Macedonia (Stip region) form a second one.

  5. Structure and Function Study of HIV and Influenza Fusion Proteins

    Science.gov (United States)

    Liang, Shuang

    Human immunodeficiency virus (HIV) and influenza virus are membrane-enveloped viruses causing acquired immunodeficiency syndrome (AIDS) and flu. The initial step of HIV and influenza virus infection is fusion between viral and host cell membrane catalyzed by the viral fusion protein gp41 and hemagglutinin (HA) respectively. However, the structure of gp41 and HA as well as the infection mechanism are still not fully understood. This work addresses (1) full length gp41 ectodomain and TM domain structure and function and (2) IFP membrane location and IFP-membrane interaction. My studies of gp41 protein and IFP can provide better understanding of the membrane fusion mechanism and may aid development of anti-viral therapeutics and vaccine. The full length ectodomain and transmembrane domain of gp41 and shorter constructs were expressed, purified and solubilized at physiology conditions. The constructs adopt overall alpha helical structure in SDS and DPC detergents, and showed hyperthermostability with Tm > 90 °C. The oligomeric states of these proteins vary in different detergent buffer: predominant trimer for all constructs and some hexamer fraction for HM and HM_TM protein in SDS at pH 7.4; and mixtures of monomer, trimer, and higher-order oligomer protein in DPC at pH 4.0 and 7.4. Substantial protein-induced vesicle fusion was observed, including fusion of neutral vesicles at neutral pH, which are the conditions similar HIV/cell fusion. Vesicle fusion by a gp41 ectodomain construct has rarely been observed under these conditions, and is aided by inclusion of both the FP and TM, and by protein which is predominantly trimer rather than monomer. Current data was integrated with existing data, and a structural model was proposed. Secondary structure and conformation of IFP is a helix-turn-helix structure in membrane. However, there has been arguments about the IFP membrane location. 13C-2H REDOR solid-state NMR is used to solve this problem. The IFP adopts major alpha

  6. Prepregnancy Dietary Protein Intake, Major Dietary Protein Sources, and the Risk of Gestational Diabetes Mellitus: A prospective cohort study

    OpenAIRE

    Bao, Wei; Bowers, Katherine; Tobias, Deirdre K.; Hu, Frank B.; Zhang, Cuilin

    2013-01-01

    OBJECTIVE Dietary protein is an important modulator of glucose metabolism. However, studies regarding the association between dietary protein intake and gestational diabetes mellitus (GDM) risk are sparse. This study was to examine the association. RESEARCH DESIGN AND METHODS Our study included 21,457 singleton pregnancies reported among 15,294 participants of the Nurses' Health Study II cohort between 1991 and 2001. Included pregnancies were free of chronic diseases before pregnancy or previ...

  7. Interior Point Method Evaluation for Reactive Power Flow Optimization in the Power System

    Directory of Open Access Journals (Sweden)

    Zbigniew Lubośny

    2013-03-01

    Full Text Available The paper verifies the performance of an interior point method in reactive power flow optimization in the power system. The study was conducted on a 28 node CIGRE system, using the interior point method optimization procedures implemented in Power Factory software.

  8. The Homogeneous Interior-Point Algorithm: Nonsymmetric Cones, Warmstarting, and Applications

    DEFF Research Database (Denmark)

    Skajaa, Anders

    algorithms for these problems is still limited. The goal of this thesis is to investigate and shed light on two computational aspects of homogeneous interior-point algorithms for convex conic optimization: The first part studies the possibility of devising a homogeneous interior-point method aimed at solving...... benchmarking problem test sets as well as an application from smart energy systems....

  9. Potential of 13C and 15N Labeling for Studying Protein-Protein Interactions Using Fourier Transform Infrared Spectroscopy

    NARCIS (Netherlands)

    Haris, Parvez I.; Robillard, George T.; Dijk, Alard A. van; Chapman, Dennis

    1992-01-01

    In this study, we examine the interaction between two bacterial proteins, namely HPr and IIAmtl of the Escherichia coli phosphoenolpyruvate-dependent phosphotransferase system, using FTIR spectroscopy. In an interaction involving a 1:1 molar ratio of these two proteins, when they are unlabeled, the

  10. Perancangan Interior Pusat Terapi Anak Autis Dan Indigo Berdasar Pendekatan Psikologi Interior Di Surabaya

    OpenAIRE

    Wijayanto, Anastasia Vera

    2013-01-01

    Autism and indigo is one of unusual phenomena that happening to some childs. In the case of interior design with special needs-like autism and indigo children-, we need a spesific design that fulfill needs, efficient in doing therapy and self-development. Basicly from that reasons, the functions of interior design not only for fulfill functions and aesthetics, but also cares about society's problems, especially for special needs user's. This design based on approach of interior psy...

  11. Modeling vehicle interior noise exposure dose on freeways: Considering weaving segment designs and engine operation.

    Science.gov (United States)

    Li, Qing; Qiao, Fengxiang; Yu, Lei; Shi, Junqing

    2017-07-05

    Vehicle interior noise functions at the dominant frequencies of 500 Hz below and around 800 Hz, which fall into the bands that may impair hearing. Recent studies demonstrated that freeway commuters are chronically exposed to vehicle interior noise, bearing the risk of hearing impairment. The interior noise evaluation process is mostly conducted in a laboratory environment. The test results and the developed noise models may underestimate or ignore the noise effects from dynamic traffic and road conditions and configuration. However, the interior noise is highly associated with vehicle maneuvering. The vehicle maneuvering on a freeway weaving segment is more complex because of its nature of conflicting areas. This research is intended to explore the risk of the interior noise exposure on freeway weaving segments for freeway commuters and to improve the interior noise estimation by constructing a decision tree learning-based noise exposure dose (NED) model, considering weaving segment designs and engine operation. On-road driving tests were conducted on 12 subjects on State Highway 288 in Houston, Texas. On-board Diagnosis (OBD) II, a smartphone-based roughness app, and a digital sound meter were used to collect vehicle maneuvering and engine information, International Roughness Index, and interior noise levels, respectively. Eleven variables were obtainable from the driving tests, including the length and type of a weaving segment, serving as predictors. The importance of the predictors was estimated by their out-of-bag-permuted predictor delta errors. The hazardous exposure level of the interior noise on weaving segments was quantified to hazard quotient, NED, and daily noise exposure level, respectively. Results showed that the risk of hearing impairment on freeway is acceptable; the interior noise level is the most sensitive to the pavement roughness and is subject to freeway configuration and traffic conditions. The constructed NED model shows high predictive

  12. Observational consequences of unstable stellar interiors

    Science.gov (United States)

    Cantiello, M.

    2009-11-01

    Stars are responsible for the production of all the elements, aside from hydrogen, that constitute our body. To understand the life and death of such important astrophysical objects, their interiors need to be modeled. The evolution of stars, including the effects of rotation, internal magnetic fields, convection, thermohaline mixing and pair creation is the main topic of this study. Stars often come in pairs, and the consequences of binary interaction have been explored as well. A new channel for the formation of Long Gamma Ray-Bursts has been discovered thanks to the inclusion of the aforementioned effects. This scenario suggests that a possibly large fraction of long GRBs occurs in runaway stars. A novel study of convection in massive stars is also presented, showing that microturbulence in the photosphere of hot stars might be caused by the presence of sub-surface convection zones. Such study suggests that clumping in the winds of OB stars could be caused by the same mechanism, and that magnetic fields produced in such sub-surface convection zones could appear at the surface of OB stars.

  13. Comparing protein VEGF inhibitors: In vitro biological studies

    Energy Technology Data Exchange (ETDEWEB)

    Yu, Lanlan; Liang, Xiao Huan [Genentech, Inc., 1 DNA Way, South San Francisco, CA 94080 (United States); Ferrara, Napoleone, E-mail: nf@gene.com [Genentech, Inc., 1 DNA Way, South San Francisco, CA 94080 (United States)

    2011-05-06

    Highlights: {yields} VEGF is a mediator of angiogenesis. {yields} VEGF inhibitors have clinical applications in cancer and eye disorders. {yields} Five protein VEGF inhibitors were compared for their ability to inhibit. {yields} VEGF-induced activities in cultured endothelial cells. -- Abstract: VEGF inhibitors are widely used as a therapy for tumors and intravascular neovascular disorders, but limited and conflicting data regarding their relative biological potencies are available. The purpose of the study is to compare different protein VEGF inhibitors for their ability to inhibit VEGF-stimulated activities. We tested ranibizumab, the full-length variant of ranibizumab (Mab Y0317), bevacizumab, the VEGF-TrapR1R2 and Flt(1-3)-IgG in bioassays measuring VEGF-stimulated proliferation of bovine retinal microvascular endothelial cells or chemotaxis of human umbilical vein endothelial cells (HUVEC). The inhibitors were also compared for their ability to inhibit MAP kinase activation in HUVECs following VEGF addition. Ranibizumab, VEGF-TrapR1R2 and Flt(1-3)-IgG had very similar potencies in the bioassays tested. Bevacizumab was over 10-fold less potent than these molecules. Mab Y0317 was over 30-fold more potent than bevacizumab. The findings reported in this manuscript describe important intrinsic characteristics of several VEGF inhibitors that may be useful to design and interpret preclinical or clinical studies.

  14. The Architectonic Experience of Body and Space in Augmented Interiors

    Directory of Open Access Journals (Sweden)

    Isabella Pasqualini

    2018-04-01

    Full Text Available The environment shapes our experience of space in constant interaction with the body. Architectonic interiors amplify the perception of space through the bodily senses; an effect also known as embodiment. The interaction of the bodily senses with the space surrounding the body can be tested experimentally through the manipulation of multisensory stimulation and measured via a range of behaviors related to bodily self-consciousness. Many studies have used Virtual Reality to show that visuotactile conflicts mediated via a virtual body or avatar can disrupt the unified subjective experience of the body and self. In the full-body illusion paradigm, participants feel as if the avatar was their body (ownership, self-identification and they shift their center of awareness toward the position of the avatar (self-location. However, the influence of non-bodily spatial cues around the body on embodiment remains unclear, and data about the impact of architectonic space on human perception and self-conscious states are sparse. We placed participants into a Virtual Reality arena, where large and narrow virtual interiors were displayed with and without an avatar. We then applied synchronous or asynchronous visuotactile strokes to the back of the participants and avatar, or, to the front wall of the void interiors. During conditions of illusory self-identification with the avatar, participants reported sensations of containment, drift, and touch with the architectonic environment. The absence of the avatar suppressed such feelings, yet, in the large space, we found an effect of continuity between the physical and the virtual interior depending on the full-body illusion. We discuss subjective feelings evoked by architecture and compare the full-body illusion in augmented interiors to architectonic embodiment. A relevant outcome of this study is the potential to dissociate the egocentric, first-person view from the physical point of view through augmented

  15. Pengaruh Elemen Interior Restoran terhadap Pengalaman Nostalgia Konsumen

    Directory of Open Access Journals (Sweden)

    Miranti Sari Rahma

    2017-09-01

    Full Text Available Selama beberapa tahun terakhir, restoran bertema "nostalgia" menjadi populer di Bandung. Penelitian ini bertujuan untuk mengeksplorasi unsur-unsur lingkungan yang disukai konsumen di restoran yang dapat mempengaruhi respon pengalaman nostalgia konsumen di restoran. Penelitian ini menggunakan metode deskriptif eksploratif untuk menentukan variabel yang dapat digunakan sebagai stimulus eksperimen berikutnya guna mendapatkan respon persepsi, emosi, dan sikap. Data hasil eksperimen dianalisis menggunakan ANOVA, menunjukkan bahwa (1 elemen interior restoran yang paling mempengaruhi pengalaman nostalgia konsumen di restoran; (2 meskipun gaya modern dapat membangkitkan respon persepsi, emosi dan sikap nostalgia, elemen dekoratif dan furnitur kolonial paling efektif dapat membangkitkan pengalaman nostalga; (3 ditemukan juga hubungan antara persepsi, emosi, dan sikap kaitannya dengan proses persepsi, emosi dapat mempengaruhi sikap konsumen di restoran, hal ini sejalan dengan mekanisme persepsi dimana kontribusi pengalaman masa lalu dapat membangkitkan emosi sehingga mempengaruhi persepsi dan munculnya sikap konsumen di restoran. Effect of Restaurant Interior Elements on Consumer Nostalgic Experience Abstract. In the last few years, ‘nostalgic’ restaurants have become quite popular in Bandung. This study was aimed at exploring interior elements that may evoke a nostalgic experience in consumers in a restaurant. In this study, an exploratory descriptive method was applied to determine the variables to be used as stimulus in the experiment to get perception, emotion, and attitude responses. The data of this research were analyzed by ANOVA and showed that: (1 interior elements of the restaurant influenced the nostalgic experience by consumers; (2 colonial decorative elements and colonial style furniture, even if other interior elements have a modern style, can evoke nostalgic perceptions, emotions, and attitudes; (3 a link was found between perceptions

  16. Dendronic trimaltoside amphiphiles (DTMs) for membrane protein study

    DEFF Research Database (Denmark)

    Sadaf, Aiman; Du, Yang; Santillan, Claudia

    2017-01-01

    The critical contribution of membrane proteins in normal cellular function makes their detailed structure and functional analysis essential. Detergents, amphipathic agents with the ability to maintain membrane proteins in a soluble state in aqueous solution, have key roles in membrane protein...... alkyl chains by introducing dendronic hydrophobic groups connected to a trimaltoside head group, designated dendronic trimaltosides (DTMs). Representative DTMs conferred enhanced stabilization to multiple membrane proteins compared to the benchmark conventional detergent, DDM. One DTM (i.e., DTM-A6...

  17. Highly Branched Pentasaccharide-Bearing Amphiphiles for Membrane Protein Studies

    DEFF Research Database (Denmark)

    Ehsan, Muhammad; Du, Yang; Scull, Nicola J

    2016-01-01

    Detergents are essential tools for membrane protein manipulation. Micelles formed by detergent molecules have the ability to encapsulate the hydrophobic domains of membrane proteins. The resulting protein-detergent complexes (PDCs) are compatible with the polar environments of aqueous media, maki...

  18. Studies on the Baking Properties of Several Proteins

    OpenAIRE

    筒井, 知己; 金井, 節子; ツツイ, トモミ; カナイ, セツコ; TOMOMI, TSUTSUI; SETSUKO, KANAI

    1993-01-01

    Functional properties and baking properties of several proteins were estimated. Casein and whey proteins indicated the highest emulsifying properties and the highest forming properties. ln baking, bread used these proteins also indicated the highest loaf volume. And the loaf volume increase of bread was negatively correlated to the hardness of the dough.

  19. Assessment of protein allergenicity studies in brown Norway rats

    NARCIS (Netherlands)

    Knippels, L.M.J.; Penninks, A.H.

    2002-01-01

    For the safety evaluation of genetically engineered crops, the potential allergenicity of the newly introduced protein(s) has become an important issue. There is, however, no universal and reliable test system for the evaluation of the allergic sensitizing ability of food proteins. Therefore, there

  20. Interaction between Protein, Phytate, and Microbial Phytase. In Vitro Studies

    NARCIS (Netherlands)

    Kies, A.K.; Jonge, de L.H.; Kemme, P.A.; Jongbloed, A.W.

    2006-01-01

    The interaction between protein and phytate was investigated in vitro using proteins extracted from five common feedstuffs and from casein. The appearance of naturally present soluble protein-phytate complexes in the feedstuffs, the formation of complexes at different pHs, and the degradation of

  1. Structural and Biochemical Studies of LysM Proteins

    DEFF Research Database (Denmark)

    Wong, Mei Mei Jaslyn Elizabeth

    2017-01-01

    The Lysin Motif (LysM) is a well characterised carbohydrate-binding module that is present, usually as repeated entities, in proteins from all organisms except archaea. The functional significance of the multiplicity of the LysM module was investigated using two homologous NlpC/P60 endopeptidases...... involved in peptidoglycan hydrolysis; the Cell Wall Lytic enzyme associated with cell Separation (CwlS) from Bacillus subtilis, and P60_Tth from Thermus thermopiles. Biochemical studies conducted on purified CwlS showed that multiple LysM modules function cooperatively to bind N-acetylglucosamine (NAG......) polymers, and that the increased affinity was positively correlated to the catalytic activity of the enzyme. The cooperativity of LysM domains was further demonstrated in structural studies on P60_2LysM, a variant of P60_Tth that contains only two LysM domains and lacks the catalytic domain. Ligand...

  2. Study of protein and metabolic profile of sugarcane workers

    Energy Technology Data Exchange (ETDEWEB)

    Polachini, G.M.; Tajara, E.H. [Faculdade de Medicina de Sao Jose do Rio Preto (FAMERP), SP (Brazil); Santos, U.P. [Universidade de Sao Paulo (USP), SP (Brazil); Zeri, A.C.M.; Paes Leme, A.F. [Laboratorio Nacional de Luz Sincrotron (LNLS), Campinas, SP (Brazil)

    2012-07-01

    Full text: The National Alcohol Program (Proalcool) is a successful Brazilian renewable fuel initiative aiming to reduce the country's oil dependence. Producing ethanol from sugar cane, the program has shown positive results although accompanied by potential damage. The environmental impact mainly derives from the particulate matter emissions due to sugarcane burning, which is potentially harmful to human health. The physical activity of sugarcane workers is repetitive and exhaustive and is carried out in presence of dust, smoke and soot. The efforts by the sugarcane workers during the labor process result in increased risks of nervous, respiratory and cardiovascular system diseases and also in premature death. The aim of the present study was to investigate the effect of occupational stress on protein and metabolic profile of sugarcane workers. Forty serum samples were analyzed by 1-DE and LC MS/MS proteomic shotgun strategy and nuclear magnetic resonance (NMR). A set of proteins was found to be altered in workers after crops when compared with controls. The analysis of NMR spectra by Chenomx also showed differences in the expression of metabolites. For example, lactate displayed higher levels in control subjects than in sugarcane workers, and vice versa for the acetate. The concentrations of the two metabolites were lower after the crop, except in the case of acetate, which remained uniform in the control subjects before and after the crop. The present findings can have important application for rational designs of preventive measures and early disease detection in sugarcane workers. (author)

  3. Structural and binding studies of SAP-1 protein with heparin.

    Science.gov (United States)

    Yadav, Vikash K; Mandal, Rahul S; Puniya, Bhanwar L; Kumar, Rahul; Dey, Sharmistha; Singh, Sarman; Yadav, Savita

    2015-03-01

    SAP-1 is a low molecular weight cysteine protease inhibitor (CPI) which belongs to type-2 cystatins family. SAP-1 protein purified from human seminal plasma (HuSP) has been shown to inhibit cysteine and serine proteases and exhibit interesting biological properties, including high temperature and pH stability. Heparin is a naturally occurring glycosaminoglycan (with varied chain length) which interacts with a number of proteins and regulates multiple steps in different biological processes. As an anticoagulant, heparin enhances inhibition of thrombin by the serpin antithrombin III. Therefore, we have employed surface plasmon resonance (SPR) to improve our understanding of the binding interaction between heparin and SAP-1 (protease inhibitor). SPR data suggest that SAP-1 binds to heparin with a significant affinity (KD = 158 nm). SPR solution competition studies using heparin oligosaccharides showed that the binding of SAP-1 to heparin is dependent on chain length. Large oligosaccharides show strong binding affinity for SAP-1. Further to get insight into the structural aspect of interactions between SAP-1 and heparin, we used modelled structure of the SAP-1 and docked with heparin and heparin-derived polysaccharides. The results suggest that a positively charged residue lysine plays important role in these interactions. Such information should improve our understanding of how heparin, present in the reproductive tract, regulates cystatins activity. © 2014 John Wiley & Sons A/S.

  4. Study of protein and metabolic profile of sugarcane workers

    International Nuclear Information System (INIS)

    Polachini, G.M.; Tajara, E.H.; Santos, U.P.; Zeri, A.C.M.; Paes Leme, A.F.

    2012-01-01

    Full text: The National Alcohol Program (Proalcool) is a successful Brazilian renewable fuel initiative aiming to reduce the country's oil dependence. Producing ethanol from sugar cane, the program has shown positive results although accompanied by potential damage. The environmental impact mainly derives from the particulate matter emissions due to sugarcane burning, which is potentially harmful to human health. The physical activity of sugarcane workers is repetitive and exhaustive and is carried out in presence of dust, smoke and soot. The efforts by the sugarcane workers during the labor process result in increased risks of nervous, respiratory and cardiovascular system diseases and also in premature death. The aim of the present study was to investigate the effect of occupational stress on protein and metabolic profile of sugarcane workers. Forty serum samples were analyzed by 1-DE and LC MS/MS proteomic shotgun strategy and nuclear magnetic resonance (NMR). A set of proteins was found to be altered in workers after crops when compared with controls. The analysis of NMR spectra by Chenomx also showed differences in the expression of metabolites. For example, lactate displayed higher levels in control subjects than in sugarcane workers, and vice versa for the acetate. The concentrations of the two metabolites were lower after the crop, except in the case of acetate, which remained uniform in the control subjects before and after the crop. The present findings can have important application for rational designs of preventive measures and early disease detection in sugarcane workers. (author)

  5. Reverse protein arrays applied to host-pathogen interaction studies.

    Science.gov (United States)

    Cid, Víctor J; Kauffmann, Ekkehard; Molina, María

    2011-01-01

    Infection of cells and tissues by pathogenic microorganisms often involves severe reprogramming of host cell signaling. Typically, invasive microorganisms manipulate host cellular pathways seeking advantage for replication and survival within the host, or to evade the immune response. Understanding such subversion of the host cell by intracellular pathogens at a molecular level is the key to possible preventive and therapeutic interventions on infectious diseases. Reverse Protein Arrays (RPAs) have been exploited in other fields, especially in molecular oncology. However, this technology has not been applied yet to the study of infectious diseases. Coupling classic in vitro infection techniques used by cellular microbiologists to proteomic approaches such as RPA analysis should provide a wealth of information about how host cell pathways are manipulated by pathogens. The increasing availability of antibodies specific for phosphorylated epitopes in signaling proteins allows monitoring global changes in phosphorylation through the infection process by utilizing RPA analyses. In our lab, we have shown the potential of RPA technology in this field by devising a microarray consisting of lysates from cell cultures infected by Salmonella typhimurium. The protocols used are described here.

  6. Structural studies on proton/protonation of the protein molecule

    International Nuclear Information System (INIS)

    Morimoto, Yukio; Kida, Akiko; Chatake, Toshiyuki; Yamaguchi, Hiroshi; Hosokawa, Keiichi; Murakami, Takuto; Umino, Masaaki; Tanaka, Ichiro; Hisatome, Ichiro; Yanagisawa, Yasutake; Fujiwara, Satoshi; Hidaka, Yuji; Shimamoto, Shigeru; Fujiwara, Mitsutoshi; Nakanishi, Takeyoshi

    2015-01-01

    This paper reports three studies involved in the analysis of protons and protonation at physiologically active sites in protein molecules. (1) 'Elucidation of the higher-order structure formation and activity performing mechanism of yeast proteasome.' With an aim to apply to anti-cancer drugs, this study performed the shape analysis of the total structure of 26S proteasome using small-angle X-ray scattering to clarify the complex form where controlling elements bonded to the both ends of 20S catalyst body, and analyzed the complex structure between the active sites of 20S and inhibitor (drug). (2) 'Basic study on the neutron experiment of biomolecules such as physiologically active substances derived from Natto-bacteria.' This study conducted the purification, crystallization, and X-ray analysis experiment of nattokinase; high-grade purification and solution experiment of vitamin K2 (menaquinone-7); and Z-DNA crystal structure study related to the neutron crystal analysis of DNA as another biomolecule structure study. (3) 'Functional evaluation on digestive enzymes derived from Nephila clavata.' As an Alzheimer's disease-related amyloid fibril formation model, this study carried out elucidation on the fibrosis and fiber-forming mechanism of the traction fiber of Nephila clavata, and the functional analysis of its degrading enzyme. (A.O.)

  7. Application of green fluorescent protein-labeled assay for the study of subcellular localization of Newcastle disease virus matrix protein.

    Science.gov (United States)

    Duan, Zhiqiang; Li, Qunhui; He, Liang; Zhao, Guo; Chen, Jian; Hu, Shunlin; Liu, Xiufan

    2013-12-01

    Green fluorescent protein (GFP) used as a powerful marker of gene expression in vivo has so far been applied widely in studying the localizations and functions of protein in living cells. In this study, GFP-labeled assay was used to investigate the subcellular localization of matrix (M) protein of different virulence and genotype Newcastle disease virus (NDV) strains. The M protein of ten NDV strains fused with GFP (GFP-M) all showed nuclear-and-nucleolar localization throughout transfection, whereas that of the other two strains were observed in the nucleus and nucleolus early in transfection but in the cytoplasm late in transfection. In addition, mutations to the previously defined nuclear localization signal in the GFP-M fusion protein were studied as well. Single changes at positions 262 and 263 did not affect nuclear localization of M, while changing both of these arginine residues to asparagine caused re-localization of M mainly to the cytoplasm. The GFP-M was validated as a suitable system for studying the subcellular localization of M protein and could be used to assist us in further identifying the signal sequences responsible for the nucleolar localization and cytoplasmic localization of M protein. Copyright © 2013 Elsevier B.V. All rights reserved.

  8. Study on protein conformation and adsorption behaviors in nanodiamond particle-protein complexes

    Energy Technology Data Exchange (ETDEWEB)

    Wang Haidong [Department of Biomedical Engineering, University of Saskatchewan, Saskatoon, S7N 5A9 (Canada); Niu, Catherine Hui [Department of Chemical Engineering, University of Saskatchewan, Saskatoon, S7N 5A9 (Canada); Yang Qiaoqin [Department of Mechanical Engineering, University of Saskatchewan, Saskatoon, S7N 5A9 (Canada); Badea, Ildiko, E-mail: catherine.niu@usask.ca [Drug Design and Discovery Research Group, College of Pharmacy and Nutrition, University of Saskatchewan, Saskatoon, S7N 5C9 (Canada)

    2011-04-08

    In the present research, the conformation of bovine serum albumin (BSA) in the nanodiamond particle (ND)-BSA complex was studied by Fourier transform infrared spectroscopy, fluorescence spectroscopy, UV-vis spectroscopy, and circular dichroism spectroscopy. The spectroscopic study revealed that most BSA structural features could be preserved in the complex though the BSA underwent conformational changes in the complex due to ND-BSA interaction. In addition, BSA adsorption isotherms and zeta-potential measurements were employed to investigate the pH dependence of the ND-BSA interaction. The changes in surface charge of the ND-BSA complex with pH variations indicated that the binding of BSA to ND might lead to not only the adsorption of BSA onto the ND surface but also the partial breakup of ND aggregates into relatively small ND-BSA aggregates because of the strong binding force between ND and BSA. The results show that ND is an excellent platform for protein immobilization with high affinity and holds great potential to be used for biosensor applications.

  9. Grain protein concentration and harvestable protein under future climate conditions. A study of 108 spring barley accessions

    DEFF Research Database (Denmark)

    Ingvordsen, Cathrine Heinz; Gislum, René; Jørgensen, Johannes Ravn

    2016-01-01

    In the present study a set of 108 spring barley (H. vulgare L.) accessions were cultivated under predicted future levels of temperature and [CO2] as single factors and in combination (IPCC, AR5, RCP8.5). Across all genotypes, elevated [CO2] (700 ppm day/night) slightly decreased protein concentra......In the present study a set of 108 spring barley (H. vulgare L.) accessions were cultivated under predicted future levels of temperature and [CO2] as single factors and in combination (IPCC, AR5, RCP8.5). Across all genotypes, elevated [CO2] (700 ppm day/night) slightly decreased protein...... protein under future climate change conditions....

  10. Present problems of the solar interior

    International Nuclear Information System (INIS)

    Roxburgh, I.W.

    1986-01-01

    The standard model of solar evolution is reviewed and a number of problems highlighted. A fundamental question is whether there is any mixing of matter in the central regions, since such mixing could radically alter the model of the present Sun and modify our understanding of the evolution of other stars. Standard models of solar evolution become unstable to /sup 3/He driven global oscillations at an age of 3 x 10/sup 8/ years and this may drive some mixing, even if this is not the case the finite amptitude limit of these oscillations is likely to produce modifications in the standard model. Convective overshooting at the bottom of the outer convective zone leads to an increased depth of this zone and small changes in the interior. It is pointed out that the young Sun had a /sup 12/C driven convective core whose extent and duration depends on the extend of overshooting. Such a core is likely to produce a magnetic field which will affect the internal dynamics. The internal rotation of the sun remains an enigma and absence of knowledge of any internal magnetic field makes it difficult to study the problem. Rotationally driven instabilities are ineffective in the central chemically inhomogeneous regions but may contribute to the inward diffusion of lithium from the convective zone. These and other problems are considered, but few solutions are proposed

  11. Tidal constraints on the interior of Venus

    Science.gov (United States)

    Dumoulin, C.; Tobie, G.; Verhoeven, O.; Rosenblatt, P.; Rambaux, N.

    2017-12-01

    As a prospective study for a future exploration of Venus, we compute the tidal response of Venus' interior assuming various mantle compositions and temperature profiles representative of different scenarios of Venus' formation and evolution. The mantle density and seismic velocities are modeled from thermodynamical equilibria of mantle minerals and used to predict the moment of inertia, Love numbers, and tide-induced phase lag characterizing the signature of the internal structure in the gravity field. The viscoelasticity of the mantle is parameterized using an Andrade rheology. From the models considered here, the moment of inertia lies in the range of 0.327 to 0.342, corresponding to a core radius of 2900 to 3450 km. Viscoelasticity of the mantle strongly increases the potential Love number relative to previously published elastic models. Due to the anelasticity effects, we show that the possibility of a completely solid metal core inside Venus cannot be ruled out based on the available estimate of k2 from the Magellan mission (Konopliv and Yoder, 1996). A Love number k2 lower than 0.27 would indicate the presence of a fully solid iron core, while for larger values, solutions with an entirely or partially liquid core are possible. Precise determination of the Love numbers, k2 and h2, together with an estimate of the tidal phase lag, are required to determine the state and size of the core, as well as the composition and viscosity of the mantle.

  12. Protein selectivity with immobilized metal ion-tacn sorbents: chromatographic studies with human serum proteins and several other globular proteins.

    Science.gov (United States)

    Jiang, W; Graham, B; Spiccia, L; Hearn, M T

    1998-01-01

    The chromatographic selectivity of the immobilized chelate system, 1,4,7-triazocyclononane (tacn), complexed with the borderline metal ions Cu2+, Cr3+, Mn2+, Co2+, Zn2+, and Ni2+ has been investigated with hen egg white lysozyme, horse heart cytochrome c, and horse skeletal muscle myoglobin, as well as proteins present in partially fractionated preparations of human plasma. The effects of ionic strength and pH of the loading and elution buffers on protein selectivities of these new immobilized metal ion affinity chromatographic (IMAC) systems have been examined. The results confirm that immobilized Mn;pl-tacn sorbents exhibit a novel type of IMAC behavior with proteins. In particular, the chromatographic properties of these immobilized M(n+)-tacn ligand systems were significantly different compared to the IMAC behavior observed with other types of immobilized tri- and tetradentate chelating ligands, such as iminodiacetic acid, O-phosphoserine, or nitrilotriacetic acid, when complexed with borderline metal ions. The experimental results have consequently been evaluated in terms of the additional contributions to the interactive processes mediated by effects other than solely the conventional lone pair Lewis soft acid-Lewis soft base coordination interactions, typically found for the IMAC of proteins with borderline and soft metal ions, such as Cu2+ or Ni2+.

  13. The selectivity of protein-imprinted gels and its relation to protein properties: A computer simulation study.

    Science.gov (United States)

    Yankelov, Rami; Yungerman, Irena; Srebnik, Simcha

    2017-07-01

    Polymer-based protein recognition systems have enormous potential within clinical and diagnostic fields due to their reusability, biocompatibility, ease of manufacturing, and potential specificity. Imprinted polymer matrices have been extensively studied and applied as a simple technique for creating artificial polymer-based recognition gels for a target molecule. Although this technique has been proven effective when targeting small molecules (such as drugs), imprinting of proteins have so far resulted in materials with limited selectivity due to the large molecular size of the protein and aqueous environment. Using coarse-grained molecular simulation, we investigate the relation between protein makeup, polymer properties, and the selectivity of imprinted gels. Nonspecific binding that results in poor selectivity is shown to be strongly dependent on surface chemistry of the template and competitor proteins as well as on polymer chemistry. Residence time distributions of proteins diffusing within the gels provide a transparent picture of the relation between polymer constitution, protein properties, and the nonspecific interactions with the imprinted gel. The pronounced effect of protein surface chemistry on imprinted gel specificity is demonstrated. Copyright © 2017 John Wiley & Sons, Ltd.

  14. The Prefabricated Interior Design Studio: An Exploration into the History and Sustainability of Interior Prefabrication

    Science.gov (United States)

    Schneiderman, Deborah; Freihoefer, Kara

    2013-01-01

    This article examines the integration of prefabrication into an interior design studio. A review of the literature revealed that while there is a paucity of categorical research focused on this subject, the subject is historically significant with an abundance of evidence regarding the prefabrication of the interior environment dating back…

  15. 49 CFR 179.12 - Interior heater systems.

    Science.gov (United States)

    2010-10-01

    ... 49 Transportation 2 2010-10-01 2010-10-01 false Interior heater systems. 179.12 Section 179.12... Design Requirements § 179.12 Interior heater systems. (a) Interior heater systems shall be of approved... each compartment. (b) Each interior heater system shall be hydrostatically tested at not less than 13...

  16. Interior design. Mastering the master plan.

    Science.gov (United States)

    Mesbah, C E

    1995-10-01

    Reflecting on the results of the survey, this proposed interior design master planning process addresses the concerns and issues of both CEOs and facility managers in ways that focus on problem-solving strategies and methods. Use of the interior design master plan process further promotes the goals and outcomes expressed in the survey by both groups. These include enhanced facility image, the efficient selection of finishes and furnishings, continuity despite staff changes, and overall savings in both costs and time. The interior design master plan allows administrators and facility managers to anticipate changes resulting from the restructuring of health care delivery. The administrators and facility managers are then able to respond in ways that manage those changes in the flexible and cost-effective manner they are striving for. This framework permits staff members to concentrate their time and energy on the care of their patients--which is, after all, what it's all about.

  17. Penerapan Psikologi Desain pada Elemen Desain Interior

    Directory of Open Access Journals (Sweden)

    Budi Setiawan

    2014-10-01

    Full Text Available One of main interior designer’s assignments is to solve the problem within the facility. Problems may occur because the activities of design decision had done or will be done on the facility are not maximized. This problem can be reduced by rethinking the design through psychology design. Utilizing psychology design will help designer decide a better judgment of objects that affects the person using it in routine. The example of interior objects is wall, door, floor, color, and other elements of interior. Desk research method was used to support this article trough data collection from books and other professional institution websites. At the end, the conclusion of this article does not directly impact the result since it took time to persuade judgment of the user, but positively it will construct designer to rethink the design object.  

  18. Inequivalence of interior and exterior dynamical problems

    International Nuclear Information System (INIS)

    Santilli, R.M.

    1991-09-01

    We begin a series of notes with the review of the historical distinction by Lagrange, Hamilton, Jacobi and other Founding Fathers of analytic dynamics, between the exteriordynamical problem, consisting of motion in vacuum under action-at-a-distance interactions, and the interior dynamical problem, consisting of motion within a resistive medium with the additional presence of contact, nonlinear, nonlocal and nonhamiltonian internal forces. After recalling some of the historical reasons that led to the contemporary, virtually complete restriction of research to the exterior problem, we show that the interior dynamical problem cannot be reduced to the exterior one. This establishes the open character of the central objective of these notes: the identification of the space-time symmetries and relativities that are applicable to interior, nonlinear, nonlocal and nonhamiltonian systems. (author). 29 refs

  19. Energetic frustrations in protein folding at residue resolution: a homologous simulation study of Im9 proteins.

    Directory of Open Access Journals (Sweden)

    Yunxiang Sun

    Full Text Available Energetic frustration is becoming an important topic for understanding the mechanisms of protein folding, which is a long-standing big biological problem usually investigated by the free energy landscape theory. Despite the significant advances in probing the effects of folding frustrations on the overall features of protein folding pathways and folding intermediates, detailed characterizations of folding frustrations at an atomic or residue level are still lacking. In addition, how and to what extent folding frustrations interact with protein topology in determining folding mechanisms remains unclear. In this paper, we tried to understand energetic frustrations in the context of protein topology structures or native-contact networks by comparing the energetic frustrations of five homologous Im9 alpha-helix proteins that share very similar topology structures but have a single hydrophilic-to-hydrophobic mutual mutation. The folding simulations were performed using a coarse-grained Gō-like model, while non-native hydrophobic interactions were introduced as energetic frustrations using a Lennard-Jones potential function. Energetic frustrations were then examined at residue level based on φ-value analyses of the transition state ensemble structures and mapped back to native-contact networks. Our calculations show that energetic frustrations have highly heterogeneous influences on the folding of the four helices of the examined structures depending on the local environment of the frustration centers. Also, the closer the introduced frustration is to the center of the native-contact network, the larger the changes in the protein folding. Our findings add a new dimension to the understanding of protein folding the topology determination in that energetic frustrations works closely with native-contact networks to affect the protein folding.

  20. Residual on column host cell protein analysis during lifetime studies of protein A chromatography.

    Science.gov (United States)

    Lintern, Katherine; Pathak, Mili; Smales, C Mark; Howland, Kevin; Rathore, Anurag; Bracewell, Daniel G

    2016-08-26

    Capacity reduction in protein A affinity chromatography with extended cycling during therapeutic antibody manufacture is well documented. Identification of which residual proteins remain from previous cycles during the lifetime of these adsorbent materials is required to understand their role in this ageing process, but represents a significant metrological challenge. Scanning electron microscopy (SEM) and liquid chromatography mass spectrometry (LC-MS/MS) are combined to detect and map this phenomenon of protein carry-over. We show that there is a morphological change at the surface of the agarose resin, revealing deposits on the polymer fibres increasing with cycle number. The amount of residual host cell proteins (HCPs) by LC-MS/MS present on the resin is shown to increase 10-fold between 50 and 100 cycles. During this same period the functional class of the predominant HCPs associated with the resin increased in diversity, with number of proteins identified increasing 5-fold. This ageing is observed in the context of the product quality of the eluate HCP and protein A leachate concentration remaining constant with cycle number. Copyright © 2016 The Author(s). Published by Elsevier B.V. All rights reserved.

  1. Single-Molecule Study of Proteins by Biological Nanopore Sensors

    Science.gov (United States)

    Wu, Dongmei; Bi, Sheng; Zhang, Liyu; Yang, Jun

    2014-01-01

    Nanopore technology has been developed for detecting properties of proteins through monitoring of ionic current modulations as protein passes via a nanosize pore. As a real-time, sensitive, selective and stable technology, biological nanopores are of widespread concern. Here, we introduce the background of nanopore researches in the area of α-hemolysin (α-HL) nanopores in protein conformation detections and protein–ligand interactions. Moreover, several original biological nanopores are also introduced with various features and functions. PMID:25268917

  2. Single-Molecule Study of Proteins by Biological Nanopore Sensors

    Directory of Open Access Journals (Sweden)

    Dongmei Wu

    2014-09-01

    Full Text Available Nanopore technology has been developed for detecting properties of proteins through monitoring of ionic current modulations as protein passes via a nanosize pore. As a real-time, sensitive, selective and stable technology, biological nanopores are of widespread concern. Here, we introduce the background of nanopore researches in the area of α-hemolysin (α-HL nanopores in protein conformation detections and protein–ligand interactions. Moreover, several original biological nanopores are also introduced with various features and functions.

  3. Study on radioimmunoassay of Bt Cry1Ac protein

    International Nuclear Information System (INIS)

    Pan Jiarong; Zhang Wei; Lin Min; Zhang Jie; Qiao Yanhong

    2006-01-01

    Bt Cry1Ac protein was extracted from incubation of Bacillus thuringiensis HD-73, and cutting into more specific protein segment with high insect-resistance. High-affinity multi-colonial antibodies of Bt Cry1 Ac protein were obtained after injected it into New Zealand rabbits. By 125 I labeling of Bt Cry1 Ac protein, a RIA kit was established. In this method, centrifuge for separation was not necessary due to the use of magnetic micro-particle and the specifications of the kit were found equal to those of imported ELISA. (authors)

  4. Whey Protein Supplementation Enhances Whole Body Protein Metabolism and Performance Recovery after Resistance Exercise: A Double-Blind Crossover Study.

    Science.gov (United States)

    West, Daniel W D; Abou Sawan, Sidney; Mazzulla, Michael; Williamson, Eric; Moore, Daniel R

    2017-07-11

    No study has concurrently measured changes in free-living whole body protein metabolism and exercise performance during recovery from an acute bout of resistance exercise. We aimed to determine if whey protein ingestion enhances whole body net protein balance and recovery of exercise performance during overnight (10 h) and 24 h recovery after whole body resistance exercise in trained men. In a double-blind crossover design, 12 trained men (76 ± 8 kg, 24 ± 4 years old, 14% ± 5% body fat; means ± standard deviation (SD)) performed resistance exercise in the evening prior to consuming either 25 g of whey protein (PRO; MuscleTech 100% Whey) or an energy-matched placebo (CHO) immediately post-exercise (0 h), and again the following morning (~10 h of recovery). A third randomized trial, completed by the same participants, involving no exercise and no supplement served as a rested control trial (Rest). Participants ingested [ 15 N]glycine to determine whole body protein kinetics and net protein balance over 10 and 24 h of recovery. Performance was assessed pre-exercise and at 0, 10, and 24 h of recovery using a battery of tests. Net protein balance tended to improve in PRO ( P = 0.064; effect size (ES) = 0.61, PRO vs. CHO) during overnight recovery. Over 24 h, net balance was enhanced in PRO ( P = 0.036) but not in CHO ( P = 0.84; ES = 0.69, PRO vs. CHO), which was mediated primarily by a reduction in protein breakdown (PRO protein supplementation improved MVC (ES = 0.76), REP (ES = 0.44), and peak power (ES = 0.55). In conclusion, whey protein supplementation enhances whole body anabolism, and may improve acute recovery of exercise performance after a strenuous bout of resistance exercise.

  5. Perancangan Interior Museum Film Indonesia Di Surabaya

    OpenAIRE

    Limantoro, Lim Renawati

    2013-01-01

    Surabaya is a city with a thriving cultural variety with a pluralistic society where people in Surabaya is more modern that easy to accept new things that developed in the community. Museum is a public place so that the necessary interior educative and informative and can be used as a sports-themed Indonesian films. The purpose of designing the interior of the film museum in Surabaya this is a venue to preserve Indonesian films and give knowledge to the people of Surabaya on the world of cine...

  6. Interior point algorithms theory and analysis

    CERN Document Server

    Ye, Yinyu

    2011-01-01

    The first comprehensive review of the theory and practice of one of today's most powerful optimization techniques. The explosive growth of research into and development of interior point algorithms over the past two decades has significantly improved the complexity of linear programming and yielded some of today's most sophisticated computing techniques. This book offers a comprehensive and thorough treatment of the theory, analysis, and implementation of this powerful computational tool. Interior Point Algorithms provides detailed coverage of all basic and advanced aspects of the subject.

  7. Possibilities to improve the aircraft interior comfort experience.

    Science.gov (United States)

    Vink, P; Bazley, C; Kamp, I; Blok, M

    2012-03-01

    Comfort plays an increasingly important role in the interior design of airplanes. Although ample research has been conducted on airplane design technology, only a small amount of public scientific information is available addressing the passenger's opinion. In this study, more than 10,000 internet trip reports and 153 passenger interviews were used to gather opinions about aspects which need to be improved in order to design a more comfortable aircraft interior. The results show clear relationships between comfort and legroom, hygiene, crew attention and seat/personal space. Passengers rate the newer planes significantly better than older ones, indicating that attention to design for comfort has proven effective. The study also shows that rude flight attendants and bad hygiene reduce the comfort experience drastically and that a high comfort rating is related to higher "fly again" values. Copyright © 2011 Elsevier Ltd and The Ergonomics Society. All rights reserved.

  8. Co-operative intra-protein structural response due to protein-protein complexation revealed through thermodynamic quantification: study of MDM2-p53 binding

    Science.gov (United States)

    Samanta, Sudipta; Mukherjee, Sanchita

    2017-10-01

    The p53 protein activation protects the organism from propagation of cells with damaged DNA having oncogenic mutations. In normal cells, activity of p53 is controlled by interaction with MDM2. The well understood p53-MDM2 interaction facilitates design of ligands that could potentially disrupt or prevent the complexation owing to its emergence as an important objective for cancer therapy. However, thermodynamic quantification of the p53-peptide induced structural changes of the MDM2-protein remains an area to be explored. This study attempts to understand the conformational free energy and entropy costs due to this complex formation from the histograms of dihedral angles generated from molecular dynamics simulations. Residue-specific quantification illustrates that, hydrophobic residues of the protein contribute maximum to the conformational thermodynamic changes. Thermodynamic quantification of structural changes of the protein unfold the fact that, p53 binding provides a source of inter-element cooperativity among the protein secondary structural elements, where the highest affected structural elements (α2 and α4) found at the binding site of the protein affects faraway structural elements (β1 and Loop1) of the protein. The communication perhaps involves water mediated hydrogen bonded network formation. Further, we infer that in inhibitory F19A mutation of P53, though Phe19 is important in the recognition process, it has less prominent contribution in the stability of the complex. Collectively, this study provides vivid microscopic understanding of the interaction within the protein complex along with exploring mutation sites, which will contribute further to engineer the protein function and binding affinity.

  9. Co-operative intra-protein structural response due to protein-protein complexation revealed through thermodynamic quantification: study of MDM2-p53 binding.

    Science.gov (United States)

    Samanta, Sudipta; Mukherjee, Sanchita

    2017-10-01

    The p53 protein activation protects the organism from propagation of cells with damaged DNA having oncogenic mutations. In normal cells, activity of p53 is controlled by interaction with MDM2. The well understood p53-MDM2 interaction facilitates design of ligands that could potentially disrupt or prevent the complexation owing to its emergence as an important objective for cancer therapy. However, thermodynamic quantification of the p53-peptide induced structural changes of the MDM2-protein remains an area to be explored. This study attempts to understand the conformational free energy and entropy costs due to this complex formation from the histograms of dihedral angles generated from molecular dynamics simulations. Residue-specific quantification illustrates that, hydrophobic residues of the protein contribute maximum to the conformational thermodynamic changes. Thermodynamic quantification of structural changes of the protein unfold the fact that, p53 binding provides a source of inter-element cooperativity among the protein secondary structural elements, where the highest affected structural elements (α2 and α4) found at the binding site of the protein affects faraway structural elements (β1 and Loop1) of the protein. The communication perhaps involves water mediated hydrogen bonded network formation. Further, we infer that in inhibitory F19A mutation of P53, though Phe19 is important in the recognition process, it has less prominent contribution in the stability of the complex. Collectively, this study provides vivid microscopic understanding of the interaction within the protein complex along with exploring mutation sites, which will contribute further to engineer the protein function and binding affinity.

  10. Towards universal approach for bacterial production of three-finger Ly6/uPAR proteins: Case study of cytotoxin I from cobra N. oxiana.

    Science.gov (United States)

    Shulepko, M A; Lyukmanova, E N; Shenkarev, Z O; Dubovskii, P V; Astapova, M V; Feofanov, A V; Arseniev, A S; Utkin, Y N; Kirpichnikov, M P; Dolgikh, D A

    2017-02-01

    Cytotoxins or cardiotoxins is a group of polycationic toxins from cobra venom belonging to the 'three-finger' protein superfamily (Ly6/uPAR family) which includes small β-structural proteins (60-90 residues) with high disulfide bond content (4-5 disulfides). Due to a high cytotoxic activity for cancer cells, cytotoxins are considered as potential anticancer agents. Development of the high-throughput production methods is required for the prospective applications of cytotoxins. Here, efficient approach for bacterial production of recombinant analogue of cytotoxin I from N. oxiana containing additional N-terminal Met-residue (rCTX1) was developed. rCTX1 was produced in the form of E. coli inclusion bodies. Refolding in optimized conditions provided ∼6 mg of correctly folded protein from 1 L of bacterial culture. Cytotoxicity of rCTX1 for C6 rat glioma cells was found to be similar to the activity of wild type CTX1. The milligram quantities of 13 C, 15 N-labeled rCTX1 were obtained. NMR study confirmed the similarity of the spatial structures of recombinant and wild-type toxins. Additional Met residue does not perturb the overall structure of the three-finger core. The analysis of available data for different Ly6/uPAR proteins of snake and human origin revealed that efficiency of their folding in vitro is correlated with the number of proline residues in the third loop and the surface area of hydrophobic residues buried within the protein interior. The obtained data indicate that hydrophobic core is important for the folding of proteins with high disulfide bond content. Developed expression method opens new possibilities for structure-function studies of CTX1 and other related three-finger proteins. Copyright © 2016 Elsevier Inc. All rights reserved.

  11. Immunoelectrophoretic studies on pig intestinal brush border proteins

    DEFF Research Database (Denmark)

    Danielsen, Erik Michael; Sjöström, H; Norén, O

    1977-01-01

    Brush borders were prepared from pig intestinal mucosa and the membrane proteins solubilized with either Triton X-100 or papain. Proteins, thus released, were used as antigens to raise antisera in rabbits. The immunoglobulin G fractions were isolated and shown by the double layer immunofluorescence...

  12. Small angle neutron scattering studies on protein denaturation ...

    Indian Academy of Sciences (India)

    The conformation of the unfolded protein in the presence of surfactant has been determined directly using contrast variation SANS measurements by contrast matching surfactant molecules. The protein acquires a random coil Gaussian conformation on unfolding with its radius of gyration increasing with increase in ...

  13. Study of allosteric communications in chimeric two-domain proteins

    Czech Academy of Sciences Publication Activity Database

    Boušová, Kristýna

    2017-01-01

    Roč. 26, S1 (2017), s. 74 ISSN 0961-8368. [Annual Symposium of the Protein Society /31./. 24.07.2017-27.07.2017, Montreal] Institutional support: RVO:61388963 Keywords : protein domains * chimeric structures Subject RIV: CE - Biochemistry

  14. Comparative study of C-Reactive Protein and other biochemical ...

    African Journals Online (AJOL)

    Serum levels of C-reactive proteins (CRP), Alanine aminotransferase (ALT), Aspartate aminotransferase (AST), total protein, albumin and globulins were investigated using high sensitivity Immunoturbidometric and colorimetric techniques in individuals with hepatitis (n=50), Malaria (n=50) and 40 control subjects in age ...

  15. Alpha-1-antitrypsin studies: canine serum and canine surfactant protein

    International Nuclear Information System (INIS)

    Tuttle, W.C.; Slauson, D.O.; Dahlstrom, M.; Gorman, C.

    1974-01-01

    Canine serum alpha-1-antitrypsin was isolated by gel filtration and affinity chromatography and characterized by polyacrylamide gel electrophoresis and immunoelectrophoresis. Measurement of the trypsin inhibitory capacity of the separated protein indicated a ninefold concentration of functional trypsin inhibitor during the isolation procedure. Electrophoresis demonstrated the presence of a single protein with alpha-globulin mobility and a molecular weight near that of human alpha-1-antitrypsin. The trypsin inhibitory capacity of pulmonary surfactant protein from five Beagle dogs was measured, related to total surfactant protein concentration, and compared with similar measurements on whole serum from the same animals. Results indicated a variable concentration of trypsin inhibitor in the canine pulmonary surfactant protein. However, the concentration in the surfactant protein was always significantly higher than that in the corresponding serum sample. Preliminary experiments designed to separate the trypsin inhibitory fraction(s) from the other surfactant proteins by gel filtration chromatography indicated that the trypsin inhibitor was probably a single protein with a molecular weight near that of alpha-1-antitrypsin. (U.S.)

  16. Molecular dynamics simulation studies of dielectric response and vibrational energy relaxation in photoactive yellow protein and green fluorescent protein

    Science.gov (United States)

    Xu, Yao; Gnanasekaran, Ramachandran; Leitner, David

    2012-02-01

    The first step in the photocycle of many proteins involves conformational change of a chromophore or a charge transfer reaction following photoexcitation. To explore the response of the protein and solvent environment to photoexcitation of the chromophore in photoactive yellow protein (PYP) and green fluorescent protein (GFP) we carried out molecular dynamics simulations of the dielectric response and vibrational energy relaxation (VER) from the chromophore to the protein and solvent. In PYP the time scale of the protein response, mainly contributed by Tyr42 and Glu46, to photoexcitation appears prominently between 0.1 and 0.3 picoseconds. The frequency-dependent VER rate also reveals dynamic coupling between the chromophore and residues that hydrogen bond to it. Resonances in the VER rate appear at frequencies comparable to the oscillations observed in recent fluorescence decay studies. In GFP, which undergoes excited state proton transfer about 10 ps following photoexcitation that may be assisted by specific chromophore vibrations, both the protein and water molecules inside the β-barrel surrounding the chromophore mediate the dielectric response.

  17. Exact interior solutions in 2 + 1-dimensional spacetime

    Energy Technology Data Exchange (ETDEWEB)

    Rahaman, Farook; Bhar, Piyali [Jadavpur University, Department of Mathematics, Kolkata, West Bengal (India); Biswas, Ritabrata [Indian Institute of Engineering Sceince and Technology Shibpur, Howrah, West Bengal (India); Usmani, A.A. [Aligarh Muslim University, Department of Physics, Aligarh, Uttar Pradesh (India)

    2014-04-15

    We provide a new class of exact solutions for the interior in 2 + 1-dimensional spacetime. The solutions obtained for the perfect fluid model both with and without cosmological constant (Λ) are found to be regular and singularity free. It assumes very simple analytical forms that help us to study the various physical properties of the configuration. Solutions without Λ are found to be physically acceptable. (orig.)

  18. Structure study for the complex of HU protein and DNA

    International Nuclear Information System (INIS)

    Tanaka, Ichiro; Niimura, Nobuo; Tanaka, Isao; Kataoka, Mikio; Mihara, Ken-ichi; Tokunaga, Fumio; Mita, Kazuei.

    1993-01-01

    The small angle X-ray and neutron scattering experiments have revealed the structure of the complex of DNA-binding protein HU and DNA with 20 base pair long in solution. By comparing observed Rg(Radius of gyration) of the complex with calculated Rg of the model, we have concluded that HU protein binds DNA in such a manner that the protein bends the rod-like DNA, and that the binding is rather cooperative. This is the first evidence on the structure of HU-DNA complex obtained by the diffractive method in vitro. These findings give us the view that HU protein might facilitate the DNA's dynamical reactions in a cell by winding DNA like an enzyme, and that there might been a possibility that cells turn on and off the enzymatic actions by changing the concentration of HU protein. (author)

  19. Single-molecule studies of unconventional motor protein myosin VI

    Science.gov (United States)

    Kim, HyeongJun

    Myosin VI is one of the myosin superfamily members that are actin-based molecular motors. It has received special attention due to its distinct features as compared to other myosins, such as its opposite directionality and a much larger step size than expected given the length of its "leg". This dissertation presents the author.s graduate work of several single-molecule studies on myosin VI. Special attention was paid to some of myosin VI.s tail domains that consist of proximal tail (PT), medial tail (MT), distal tail (DT) domains and cargo-binding domain (CBD). The functional form of myosin VI in cells is still under debate. Although full length myosin VI proteins in cytosolic extracts of cells were monomers from earlier studies, there are several reasons why it is now believed that myosin VI could exist as a dimer. If this is true and dimerization occurs, the next logical question would be which parts of myosin VI are dimerization regions? One model claimed that the CBD is the sole dimerization region. A competing model claimed that there must be another region that could be involved in dimerization, based on their observation that a construct without the CBD could still dimerize. Our single-molecule experiment with progressively truncated myosin VI constructs showed that the MT domain is a dimerization region, supporting the latter model. Additional single-molecule experiments and molecular dynamics (MD) simulation done with our collaborators suggest that electrostatic salt bridges formed between positive and negative amino acid residues are mainly responsible for the MT domain dimerization. After resolving this, we are left with another important question which is how myosin VI can take such a large step. Recent crystal structure showed that one of the tail domains preceding the MT domain, called the PT domain, is a three-helix bundle. The most easily conceivable way might be an unfolding of the three-helix bundle upon dimerization, allowing the protein to

  20. Mercury's magnetic field and interior

    International Nuclear Information System (INIS)

    Connerney, J.E.P.; Ness, N.F.

    1988-01-01

    The magnetic-field data collected on Mercury by the Mariner-10 spacecraft present substantial evidence for an intrinsic global magnetic field. However, studies of Mercury's thermal evolution show that it is most likely that the inner core region of Mercury solidified or froze early in the planet's history. Thus, the explanation of Mercury's magnetic field in the framework of the traditional planetary dynamo is less than certain

  1. Using a verbal prompt to increase protein consumption in a hospital setting: a field study

    NARCIS (Netherlands)

    Zanden, van der L.D.T.; Essen, van H.; Kleef, van E.; Wijk, de R.A.; Trijp, van J.C.M.

    2015-01-01

    Background: Sufficient protein intake among hospitalized patients may contribute to faster recovery and a decrease in healthcare costs. Nevertheless, hospitalized patients are often found to consume too little protein. This field study explored the success of a small, inexpensive intervention

  2. A study of variability of capsid protein genes of Radish mosaic virus

    OpenAIRE

    HOLÁ, Marcela

    2008-01-01

    The part of RNA2 genome segment of several isolates of Radish mosaic virus (RaMV) including capsid protein genes was sequenced. Variability of capsid protein genes among the isolates of Radish mosaic virus was studied.

  3. Identification of protein secondary structures by laser induced autofluorescence: A study of urea and GnHCl induced protein denaturation

    Science.gov (United States)

    Siddaramaiah, Manjunath; Satyamoorthy, Kapaettu; Rao, Bola Sadashiva Satish; Roy, Suparna; Chandra, Subhash; Mahato, Krishna Kishore

    2017-03-01

    In the present study an attempt has been made to interrogate the bulk secondary structures of some selected proteins (BSA, HSA, lysozyme, trypsin and ribonuclease A) under urea and GnHCl denaturation using laser induced autofluorescence. The proteins were treated with different concentrations of urea (3 M, 6 M, 9 M) and GnHCl (2 M, 4 M, 6 M) and the corresponding steady state autofluorescence spectra were recorded at 281 nm pulsed laser excitations. The recorded fluorescence spectra of proteins were then interpreted based on the existing PDB structures of the proteins and the Trp solvent accessibility (calculated using "Scratch protein predictor" at 30% threshold). Further, the influence of rigidity and conformation of the indole ring (caused by protein secondary structures) on the intrinsic fluorescence properties of proteins were also evaluated using fluorescence of ANS-HSA complexes, CD spectroscopy as well as with trypsin digestion experiments. The outcomes obtained clearly demonstrated GnHCl preferably disrupt helix as compared to the beta β-sheets whereas, urea found was more effective in disrupting β-sheets as compared to the helices. The other way round the proteins which have shown detectable change in the intrinsic fluorescence at lower concentrations of GnHCl were rich in helices whereas, the proteins which showed detectable change in the intrinsic fluorescence at lower concentrations of urea were rich in β-sheets. Since high salt concentrations like GnHCl and urea interfere in the secondary structure analysis by circular dichroism Spectrometry, the present method of analyzing secondary structures using laser induced autofluorescence will be highly advantageous over existing tools for the same.

  4. Solar Powered Automobile Interior Climate Control System

    Science.gov (United States)

    Howard, Richard T. (Inventor)

    2003-01-01

    There is provided a climate control system for a parked vehicle that includes a solar panel, thermostatic switch, fans, and thermoelectric coolers. The solar panel can serve as the sole source of electricity for the system. The system affords convenient installation and removal by including solar panels that are removably attached to the exterior of a vehicle. A connecting wire electrically connects the solar panels to a housing that is removably mounted to a partially opened window on the vehicle. The thermostatic switch, fans, and thermoelectric coolers are included within the housing. The thermostatic switch alternates the direction of the current flow through the thermoelectric coolers to selectively heat or cool the interior of the vehicle. The interior surface of the thermoelectric coolers are in contact with interior heat sinks that have air circulated across them by an interior fan. Similarly, the exterior surface of the thermoelectric coolers are in contact with exterior heat sinks that have air circulated across them by an exterior fan.

  5. Perspectives on the Interior of the Sun

    Indian Academy of Sciences (India)

    2016-01-27

    Jan 27, 2016 ... The interior of the Sun is not directly accessible to observations. Nonetheless, it is possible to infer the physical conditions inside the Sun with the help of structure equations governing its equilibrium and with the powerful observational tools provided by the neutrino fluxes and oscillation frequencies.

  6. Climatology of the interior Columbia River basin.

    Science.gov (United States)

    Sue A. Ferguson

    1999-01-01

    This work describes climate means and trends in each of three major ecological zones and 13 ecological reporting units in the interior Columbia River basin. Widely differing climates help define each major zone and reporting unit, the pattern of which is controlled by three competing air masses: marine, continental, and arctic. Paleoclimatic evidence and historical...

  7. Calidad del aire interior en las escuelas

    Science.gov (United States)

    EPA ha desarrollado el Programa de Herramientas de Calidad del Aire Interior para las Escuelas para reducir la exposición a los contaminantes ambientales en las mismas a través de la adopción voluntaria de las prácticas para manejar la calidad del aire int

  8. 24 CFR 3280.107 - Interior privacy.

    Science.gov (United States)

    2010-04-01

    ... 24 Housing and Urban Development 5 2010-04-01 2010-04-01 false Interior privacy. 3280.107 Section 3280.107 Housing and Urban Development Regulations Relating to Housing and Urban Development (Continued... privacy. Bathroom and toilet compartment doors shall be equipped with a privacy lock. ...

  9. Seismic View of the Solar Interior

    Indian Academy of Sciences (India)

    R. Narasimhan (Krishtel eMaging) 1461 1996 Oct 15 13:05:22

    sound waves trapped in the solar interior. As these waves travel inwards they get refracted away from the radial direction due to increasing sound speed and at some depth they suffer a total internal reflection and turn back to the surface where they are reflected by the steeply falling density profile. Thus these modes are ...

  10. Discussion on interior greening decoration of residence

    Science.gov (United States)

    Tong, ZhiNeng

    2018-02-01

    Green plants bring endless natural energy into the room. This paper introduces the functions, principles and functions of indoor greening decoration from different angles. Its conclusion is that it has become an important measure to improve the living environment of the people, and through the interior greening decoration to create a harmonious living space of architecture, human and nature.

  11. Homemaking (Clothing and Interior Decorating), Course Description.

    Science.gov (United States)

    Shelso, Bessie; Anderson, Floyd L.

    Prepared by an instructor and curriculum development specialist of the Minnesota Work Opportunity Center, this course is designed to aid the dropout and/or hard-core unemployed youth develop skills in clothing and interior decorating. The approach focuses on the individual and the goals he desires to accomplish. During the first interview, the…

  12. Juno's first peek at Jupiter's interior

    Science.gov (United States)

    Guillot, Tristan; Miguel, Yamila; Hubbard, William B.; Kaspi, Yohai; Reese, Daniel; Helled, Ravit; Galanti, Eli; Militzer, Burkhard; Wahl, Sean; Folkner, William M.; Anderson, John; Iess, Luciano; Durante, Daniele; Parisi, Marzia; Stevenson, David J.

    2017-04-01

    The first orbits of Juno around Jupiter have led to a considerable improvement in the measurement of the planet's even gravitational moments. We will discuss how this leads to better constraints on jovian interior models, and how internal differential rotation and equations of state play an important part in the analysis.

  13. The Barriers and Causes of Building Information Modelling Usage for Interior Design Industry

    Science.gov (United States)

    Hamid, A. B. Abd; Taib, M. Z. Mohd; Razak, A. H. N. Abdul; Embi, M. R.

    2017-12-01

    Building Information Modeling (BIM) has since developed alongside the improvement in the construction industry, purposely to simulate the design, management, construction and documentation. It facilitates and monitors the construction through visualization and emphasizes on various inputs to virtually design and construct a building using specific software. This study aims to identify and elaborate barriers of BIM usage in interior design industry in Malaysia. This study is initiated with a pilot survey utilising sixteen respondents that has been randomly chosen. Respondents are attached with interior design firms that are registered by Lembaga Arkitek Malaysia (LAM). The research findings are expected to provide significant information to encourage BIM adoption among interior design firms.

  14. Numerical simulation of interior flow field of nuclear model pump

    International Nuclear Information System (INIS)

    Wang Chunlin; Peng Na; Kang Can; Zhao Baitong; Zhang Hao

    2009-01-01

    Reynolds time-averaged N-S equations and the standard k-ε turbulent model were adopted, and three-dimensional non-structural of tetrahedral mesh division was used for modeling. Multiple reference frame model of rotating fluid mechanical model was used, under the design condition, the three-dimensional incompressible turbulent flow of nuclear model pump was simulated, and the results preferably post the characteristics of the interior flow field. This paper first analyzes the total pressure and velocity distribution in the flow field, and then describes the interior flow field characteristics of each part such as the impeller, diffuser and spherical shell, and also discusses the reasons that cause these characteristics. The study results can be used to estimate the performance of nuclear model pump, and will provide some useful references for its hydraulic optimized design. (authors)

  15. The interactive optical fiber fabrics for smart interior environment

    Science.gov (United States)

    Bai, Z. Q.; Dong, A. H.; Du, Z. Y.; Tan, J.

    2017-10-01

    Comparing to conventional textiles, interactive photonic textiles can emit light, present different colors, change the surface pattern and can interact with users. They are particularly suitable for decorative purpose. Home furniture is one possible application [1]. With attractive illumination and color effect, the photonic textiles can also be used in hotels, exhibition halls, restaurants and many other circumstances to enhance the interior environment. However, the functionality of the interactive photonic textile for interior purpose is still underdeveloped, since there are still sever challenges about how to improve the usability and functionality of the interactive textile. This project aims to study how to improve the interactive function of photonic textiles, which can enhance the well-being of the end-user. In the end, a color-changeable interactive cushion which can detect the main primary particulate matter (PM) 2.5 was developed.

  16. Structural studies of human glioma pathogenesis-related protein 1

    Energy Technology Data Exchange (ETDEWEB)

    Asojo, Oluwatoyin A., E-mail: oasojo@unmc.edu [College of Medicine, Nebraska Medical Center, Omaha, NE 68198-6495 (United States); Koski, Raymond A.; Bonafé, Nathalie [L2 Diagnostics LLC, 300 George Street, New Haven, CT 06511 (United States); College of Medicine, Nebraska Medical Center, Omaha, NE 68198-6495 (United States)

    2011-10-01

    Structural analysis of a truncated soluble domain of human glioma pathogenesis-related protein 1, a membrane protein implicated in the proliferation of aggressive brain cancer, is presented. Human glioma pathogenesis-related protein 1 (GLIPR1) is a membrane protein that is highly upregulated in brain cancers but is barely detectable in normal brain tissue. GLIPR1 is composed of a signal peptide that directs its secretion, a conserved cysteine-rich CAP (cysteine-rich secretory proteins, antigen 5 and pathogenesis-related 1 proteins) domain and a transmembrane domain. GLIPR1 is currently being investigated as a candidate for prostate cancer gene therapy and for glioblastoma targeted therapy. Crystal structures of a truncated soluble domain of the human GLIPR1 protein (sGLIPR1) solved by molecular replacement using a truncated polyalanine search model of the CAP domain of stecrisp, a snake-venom cysteine-rich secretory protein (CRISP), are presented. The correct molecular-replacement solution could only be obtained by removing all loops from the search model. The native structure was refined to 1.85 Å resolution and that of a Zn{sup 2+} complex was refined to 2.2 Å resolution. The latter structure revealed that the putative binding cavity coordinates Zn{sup 2+} similarly to snake-venom CRISPs, which are involved in Zn{sup 2+}-dependent mechanisms of inflammatory modulation. Both sGLIPR1 structures have extensive flexible loop/turn regions and unique charge distributions that were not observed in any of the previously reported CAP protein structures. A model is also proposed for the structure of full-length membrane-bound GLIPR1.

  17. Mercury exposure from interior latex paint.

    Science.gov (United States)

    Agocs, M M; Etzel, R A; Parrish, R G; Paschal, D C; Campagna, P R; Cohen, D S; Kilbourne, E M; Hesse, J L

    1990-10-18

    Many paint companies have used phenylmercuric acetate as a preservative to prolong the shelf life of interior latex paint. In August 1989, acrodynia, a form of mercury poisoning, occurred in a child exposed to paint fumes in a home recently painted with a brand containing 4.7 mmol of mercury per liter (at that time the Environmental Protection Agency's recommended limit was 1.5 mmol or less per liter). To determine whether the recent use of that brand of paint containing phenylmercuric acetate was associated with elevated indoor-air and urinary mercury concentrations, we studied 74 "exposed" persons living in 19 homes recently painted with the brand and 28 "unexposed" persons living in 10 homes not recently painted with paint containing mercury. The paint samples from the homes of exposed persons contained a median of 3.8 mmol of mercury per liter, and air samples from the homes had a median mercury content of 10.0 nmol per cubic meter (range, less than 0.5 to 49.9). No mercury was detected in paint or air samples from the homes of unexposed persons. The median urinary mercury concentration was higher in the exposed persons (4.7 nmol of mercury per millimole of creatinine; range, 1.4 to 66.5) than in the unexposed persons (1.1 nmol per millimole; range, 0.02 to 3.9; P less than 0.001). Urinary mercury concentrations within the range that we found in exposed persons have been associated with symptomatic mercury poisoning. We found that potentially hazardous exposure to mercury had occurred among persons whose homes were painted with a brand of paint containing mercury at concentrations approximately 2 1/2 times the Environmental Protection Agency's recommended limit.

  18. The synthesis of recombinant membrane proteins in yeast for structural studies.

    Science.gov (United States)

    Routledge, Sarah J; Mikaliunaite, Lina; Patel, Anjana; Clare, Michelle; Cartwright, Stephanie P; Bawa, Zharain; Wilks, Martin D B; Low, Floren; Hardy, David; Rothnie, Alice J; Bill, Roslyn M

    2016-02-15

    Historically, recombinant membrane protein production has been a major challenge meaning that many fewer membrane protein structures have been published than those of soluble proteins. However, there has been a recent, almost exponential increase in the number of membrane protein structures being deposited in the Protein Data Bank. This suggests that empirical methods are now available that can ensure the required protein supply for these difficult targets. This review focuses on methods that are available for protein production in yeast, which is an important source of recombinant eukaryotic membrane proteins. We provide an overview of approaches to optimize the expression plasmid, host cell and culture conditions, as well as the extraction and purification of functional protein for crystallization trials in preparation for structural studies. Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.

  19. AFM study of adsorption of protein A on a poly(dimethylsiloxane) surface

    International Nuclear Information System (INIS)

    Yu Ling; Lu Zhisong; Gan Ye; Liu Yingshuai; Li, C M

    2009-01-01

    In this paper, the morphology and kinetics of adsorption of protein A on a PDMS surface is studied by AFM. The results of effects of pH, protein concentration and contact time of the adsorption reveal that the morphology of adsorbed protein A is significantly affected by pH and adsorbed surface concentration, in which the pH away from the isoelectric point (IEP) of protein A could produce electrical repulsion to change the protein conformation, while the high adsorbed surface protein volume results in molecular networks. Protein A can form an adsorbed protein film on PDMS with a maximum volume of 2.45 x 10 -3 μm 3 . This work enhances our fundamental understanding of protein A adsorption on PDMS, a frequently used substrate component in miniaturized immunoassay devices.

  20. A Multicenter Reference Intervals Study for Specific Proteins in China

    Science.gov (United States)

    Qin, Xuzhen; Tang, Guodong; Qiu, Ling; Li, Peng Chang; Xia, Liangyu; Chen, Ming; Tao, Zhihua; Li, Shijun; Liu, Min; Wang, Liang; Gao, Shang; Yu, Songlin; Cheng, Xinqi; Han, Jianhua; Hou, Li’an; Kawano, Reo; Ichihara, Kiyoshi

    2015-01-01

    Abstract A multicenter study conducted in healthy population of 6 cities from the 4 corners and central China for 7 serum-specific proteins to identify the sources of variation and establish the reference intervals on 2 automation platforms. A total of 3148 subjects aged 19 to 64 years old were enrolled in this study to ensure at least 120 participants in each 10-year age group and each city. The majority of samples were transported to central laboratory and measured on both Beckman AU5800 and Immage 800 analytical systems. Three-level nested ANOVA, multiple regression analysis, and the scatter plot were used to explore the variations from sex, age, region, BMI, cigarette smoking, and so on. The latent abnormal value exclusion (LAVE) method was applied at the time of computing RIs as a method for secondary exclusion. Regionality was not observed in any of the immunoassay in China. Variations for sex were significant for IgM among the immune analytes. For CRP and hsCRP results with turbidimetry method (Beckman Coulter AU5800) were lower than the nephelometry method (Beckman Immage). The LAVE method did not affect the RIs computed for the majority of analytes except C4, CRP, and hsCRP. In the scatter plot at the age of 45 years old C3, C4, and IgM reached an inflection point, accordingly RIs were separated by the age group. With the lack of regional differences and the well-standardized status of test results, the RIs of C3, IgG, IgA, IgM derived from this nationwide study can be used for the entire Chinese population. C4, CRP, and hsCRP were affected by different platforms and gender was a significant source of variation for IgM, so they had separated RIs. PMID:26656356

  1. A Biochemical Study of Noncovalent Forces in Proteins Using Phycocyanin from Spirulina

    Science.gov (United States)

    Heller, Barbara A.; Gindt, Yvonne M.

    2000-11-01

    Protein tertiary structure is maintained by noncovalent forces. These forces are disrupted by simple environmental changes (increasing temperature, pH, or adding denaturants) but are not always simple to observe. This experiment, suitable for all levels of undergraduate biochemistry laboratories, uses absorption spectroscopy to monitor the denaturation of a pigmented protein. The protein, phycocyanin, contains a covalently attached pigment whose visible spectrum is sensitive to changes in protein environment. The experiment can be done in one or two 3-hour lab periods. The first session isolates the protein from cyanobacteria capsules and the second session studies the denaturation of the protein.

  2. Clustering of protein domains for functional and evolutionary studies

    Directory of Open Access Journals (Sweden)

    Long Paul F

    2009-10-01

    Full Text Available Abstract Background The number of protein family members defined by DNA sequencing is usually much larger than those characterised experimentally. This paper describes a method to divide protein families into subtypes purely on sequence criteria. Comparison with experimental data allows an independent test of the quality of the clustering. Results An evolutionary split statistic is calculated for each column in a protein multiple sequence alignment; the statistic has a larger value when a column is better described by an evolutionary model that assumes clustering around two or more amino acids rather than a single amino acid. The user selects columns (typically the top ranked columns to construct a motif. The motif is used to divide the family into subtypes using a stochastic optimization procedure related to the deterministic annealing EM algorithm (DAEM, which yields a specificity score showing how well each family member is assigned to a subtype. The clustering obtained is not strongly dependent on the number of amino acids chosen for the motif. The robustness of this method was demonstrated using six well characterized protein families: nucleotidyl cyclase, protein kinase, dehydrogenase, two polyketide synthase domains and small heat shock proteins. Phylogenetic trees did not allow accurate clustering for three of the six families. Conclusion The method clustered the families into functional subtypes with an accuracy of 90 to 100%. False assignments usually had a low specificity score.

  3. Functional conservation study of polarity protein Crumbs intracellular domain.

    Science.gov (United States)

    Shi, Qi-ping; Cao, Hao-wei; Xu, Rui; Zhang, Dan-dan; Huang, Juan

    2017-01-20

    The transmembrane protein Crumbs (Crb) plays key roles in the establishing and maintaining cell apical-basal polarity in epithelial cells by determining the apical plasma membrane identity. Although its intracellular domain contains only 37 amino acids, it is absolutely essential for its function. In Drosophila, mutations in this intracellular domain result in severe defects in epithelial polarity and abnormal embryonic development. The intracellular domain of Crb shows high homology across species from Drosophila to Mus musculus and Homo sapiens. However, the intracellular domains of the two Crb proteins in C. elegans are rather divergent from those of Drosophila and mammals, raising the question on whether the function of the intracellular domain of the Crb protein is conserved in C. elegans. Using genomic engineering approach, we replaced the intracellular domain of the Drosophila Crb with that of C. elegans Crb2 (CeCrb2), which has extremely low homology with those from the Crb proteins of Drosophila and mammals. Surprisingly, substituting the intracellular domain of Drosophila Crb with that of CeCrb2 did not cause any abnormalities in development of the Drosophila embryo, in terms of expression and localization of Crb and other polarity proteins and apical-basal polarity in embryonic epithelial cells. Our results support the notion that despite their extensive sequence variations, all functionally critical amino acid residues and motifs of the intercellular domain of Crb proteins are fully conserved between Drosophila and C. elegans.

  4. Grain protein concentration and harvestable protein under future climate conditions. A study of 108 spring barley accessions.

    Science.gov (United States)

    Ingvordsen, Cathrine H; Gislum, René; Jørgensen, Johannes R; Mikkelsen, Teis N; Stockmarr, Anders; Jørgensen, Rikke B

    2016-04-01

    In the present study a set of 108 spring barley (H. vulgare L.) accessions were cultivated under predicted future levels of temperature and [CO2] as single factors and in combination (IPCC, AR5, RCP8.5). Across all genotypes, elevated [CO2] (700 ppm day/night) slightly decreased protein concentration by 5%, while elevated temperature (+5 °C day/night) substantially increased protein concentration by 29%. The combined treatment increased protein concentration across accessions by 8%. This was an increase less than predicted from strictly additive effects of the individual treatments. Despite the increase in grain protein concentration, the decrease in grain yield at combined elevated temperature and elevated [CO2] resulted in 23% less harvestable protein. There was variation in the response of the 108 accessions, which might be exploited to at least maintain if not increase harvestable grain protein under future climate change conditions. © The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved. For permissions, please email: journals.permissions@oup.com.

  5. Acid-denatured Green Fluorescent Protein (GFP) as model substrate to study the chaperone activity of protein disulfide isomerase.

    Science.gov (United States)

    Mares, Rosa E; Meléndez-López, Samuel G; Ramos, Marco A

    2011-01-01

    Green fluorescent protein (GFP) has been widely used in several molecular and cellular biology applications, since it is remarkably stable in vitro and in vivo. Interestingly, native GFP is resistant to the most common chemical denaturants; however, a low fluorescence signal has been observed after acid-induced denaturation. Furthermore, this acid-denatured GFP has been used as substrate in studies of the folding activity of some bacterial chaperones and other chaperone-like molecules. Protein disulfide isomerase enzymes, a family of eukaryotic oxidoreductases that catalyze the oxidation and isomerization of disulfide bonds in nascent polypeptides, play a key role in protein folding and it could display chaperone activity. However, contrasting results have been reported using different proteins as model substrates. Here, we report the further application of GFP as a model substrate to study the chaperone activity of protein disulfide isomerase (PDI) enzymes. Since refolding of acid-denatured GFP can be easily and directly monitored, a simple micro-assay was used to study the effect of the molecular participants in protein refolding assisted by PDI. Additionally, the effect of a well-known inhibitor of PDI chaperone activity was also analyzed. Because of the diversity their functional activities, PDI enzymes are potentially interesting drug targets. Since PDI may be implicated in the protection of cells against ER stress, including cancer cells, inhibitors of PDI might be able to enhance the efficacy of cancer chemotherapy; furthermore, it has been demonstrated that blocking the reductive cleavage of disulfide bonds of proteins associated with the cell surface markedly reduces the infectivity of the human immunodeficiency virus. Although several high-throughput screening (HTS) assays to test PDI reductase activity have been described, we report here a novel and simple micro-assay to test the chaperone activity of PDI enzymes, which is amenable for HTS of PDI

  6. Interior Design Styles and Socio-demographic Characteristics in Egypt: From the concept of Zeitgeist

    Directory of Open Access Journals (Sweden)

    Rasha Mahmoud Ali El-Zeiny

    2016-01-01

    Full Text Available Interior design plays an important role in reflecting the social and cultural environments of countries and showing the characteristics of the age. The previous literature has suggested that people’s preferences for interior design styles are influenced by social distinctions, based on education level and age. In this study, we have argued more precisely socio – demographic factors (gender, age, income, major and city that affect the Egyptians’ preferences for interior design styles, and have discussed to what extent do the people preferences reflect Zeitgeist in Egypt. The findings supported the idea that socio-demographic factors can explain people’s design preferences.

  7. Nutational constraints on the interior structure of Mars

    Science.gov (United States)

    Rivoldini, A.; Deproost, M. H.; Baland, R. M.; Van Hoolst, T.; Yseboodt, M.; Le Maistre, S.; Péters, M. J.; Dehant, V. M. A.

    2017-12-01

    Knowledge about the rotation of Mars provides insight about its global scale atmosphere dynamics and interior structure. In particular, inferences about the core of Mars can be made by observing its nutation as foreseen by the forthcoming RISE and LaRa experiments on InSight and ExoMars. Nutation can be resonantly amplified if the planet's core is liquid and the amplification depends on the core's polar moment of inertia, figure, and capacity to deform. By combining measured nutation amplitudes with the already well known polar moment of inertia and tidal Love number the size of the core and its material properties can be determined more precisely than from the latter quantities alone. Additionally, the polar moment of the mantle can then be determined from which its composition and thermal state be constrained. Here, we first reconsider the study of the nutations of a rigidly rotating Mars. Then, we use models of Mars' interior structure that agree with its moment of inertia, tidal Love number, and global dissipation to predict the nutations of the real Mars. Our models have been constructed from depth-dependent material properties and use recent thermoelastic and melting properties of plausible core constituents. For each model we determine nutation amplitudes and assess what constraints on the interior structure of the core can be expected from RISE and LaRa.

  8. Dietary protein and risk of hypertension in a Dutch older population: the Rotterdam Study

    NARCIS (Netherlands)

    Altorf-van der Kuil, W.; Engberink, M.F.; Rooij, van F.J.A.; Hofman, A.; Veer, van 't P.; Witteman, J.C.M.; Geleijnse, J.M.

    2010-01-01

    AB Background: Several observational studies suggest an inverse association of protein with blood pressure (BP). However, little is known about the role of dietary protein from specific sources in BP. Method: We examined the relation between several types of dietary protein (total, plant, animal,

  9. A simplified model of dynamic interior cooling load evaluation for office buildings

    International Nuclear Information System (INIS)

    Ding, Yan; Zhang, Qiang; Wang, Zhaoxia; Liu, Min; He, Qing

    2016-01-01

    Highlights: • The core interior disturbance was determined by principle component analysis. • Influences of occupants on cooling load should be described using time series. • A simplified model was built to evaluate dynamic interior building cooling load. - Abstract: Predicted cooling load is a valuable tool for assessing the operation of air-conditioning systems. Compared with exterior cooling load, interior cooling load is more unpredictable. According to principle components analysis, occupancy was proved to be a typical factor influencing interior cooling loads in buildings. By exploring the regularity of interior disturbances in an office building, a simplified evaluation model for interior cooling load was established in this paper. The stochastic occupancy rate was represented by a Markov transition model. Equipment power, lighting power and fresh air were all related to occupancy rate based on time sequence. The superposition of different types of interior cooling loads was also considered in the evaluation model. The error between the evaluation results and measurement results was found to be lower than 10%. In reference to the cooling loads calculated by the traditional design method and area-based method in case study office rooms, the evaluated cooling loads were suitable for operation regulation.

  10. Study on Optimal Conditions of Alcalase Enzymatic Hydrolysis of Soybean Protein Isolate

    OpenAIRE

    Yongsheng Ma; Xianhui Sun; Lintong Wang

    2015-01-01

    Soybean protein isolate was hydrolyzed to obtain soybean polypeptide solution using Alcalase as hydrolase. Degree of hydrolysis and the recovery rate of protein were used to characterize the soybean protein hydrolysis reaction result. Influence factors of soybean protein hydrolysis reaction including the substrate concentration, temperature, pH, enzyme concentration characterized by E/S (ratio of Enzyme and Substrate) and hydrolysis time were systematically studied with single factor and mult...

  11. A Survey on the Color of Interior Design for University Students

    OpenAIRE

    Takata, Hiroshi

    2008-01-01

    The purpose of this study is to clarify the actual conditions of the color on interior design for university students. At first, the author carried out the questionnaire survey in order to grasp the characteristics of respondents and their consciousness of interior and color design. Based on the results of the questionnaire survey, the relationship between the characteristics of respondents and their consciousness was studied. Especially, the influence of the respondents' academic grade and t...

  12. Micromechanical study of protein-DNA interactions and chromosomes

    Science.gov (United States)

    Marko, John

    I will discuss micromechanics experiments that our group has used to analyze protein-DNA interactions and chromosome organization. In single-DNA experiments we have found that a feature of protein-DNA complexes is that their dissociation rates can depend strikingly on bulk solution concentrations of other proteins and DNA segments; I will describe experiments which demonstrate this effect, which can involve tens-fold changes in off-rates with submicromolar changes in solution concentrations. Second, I will discuss experiments aimed at analyzing large-scale human chromosome structure; we isolate metaphase chromosomes, which in their native form behave as remarkably elastic networks of chromatin. Exposure to DNA-cutting restriction enzymes completely eliminates this elasticity, indicating that there is not a mechanically contiguous protein ''scaffold'' from which the chromosome gains its stability. I will show results of siRNA experiments indicating that depletion of condensin proteins leads to destabilization of chromosome mechanics, indicating condensin's role as the major chromatin ''cross-linker'' in metaphase chromosomes. Finally I will discuss similar experiments on human G1 nuclei, where we use genetic and chemical modifications to separate the contributions of the nuclear lamina and chromatin to the mechanical stiffness of the nucleus as a whole. Supported by the NSF (DMR-1206868, MCB-1022117) and the NIH (GM105847, CA193419).

  13. Molecular mechanics work station for protein conformational studies

    International Nuclear Information System (INIS)

    Fine, R.; Levinthal, C.; Schoenborn, B.; Dimmier, G.; Rankowitz, C.

    1984-01-01

    Interest in computational problems in Biology has intensified over the last few years, partly due to the development of techniques for the rapid cloning, sequencing, and mutagenesis of genes from organisims ranging from E. coli to Man. The central dogma of molecular biology; that DNA codes for mRNA which codes for protein, has been understood in a linear programming sense since the genetic code was cracked. But what is not understood at present is how a protein, once assembled as a long sequence of amino acids, folds back on itself to produce a three-dimensional structure which is unique to that protein and which dictates its chemical and biological activity. This folding process is purely physics, and involves the time evolution of a system of several thousand atoms which interact with each other and with atoms from the surrounding solvent. Molecular dynamics simulations on smaller molecules suggest that approaches which treat the protein as a classical ensemble of atoms interacting with each other via an empirical Hamiltonian can yield the kind of predictive results one would like when applied to proteins

  14. Studying inner ear protein–protein interactions using FRET and FLIM

    OpenAIRE

    Hallworth, Richard; Currall, Benjamin; Nichols, Michael G.; Wu, Xudong; Zuo, Jian

    2006-01-01

    Molecular genetic studies of the inner ear have recently revealed a large number of previously undescribed proteins, but their functions remain unclear. Optical methods such as FRET and FLIM are just beginning to be applied to the study of functional interactions between novel inner ear proteins. This review discusses the various methods for employing FRET and FLIM in protein–protein interaction studies, their advantages and pitfalls, with examples drawn from inner ear studies.

  15. Whey Protein Supplementation Enhances Whole Body Protein Metabolism and Performance Recovery after Resistance Exercise: A Double-Blind Crossover Study

    Directory of Open Access Journals (Sweden)

    Daniel W. D. West

    2017-07-01

    Full Text Available No study has concurrently measured changes in free-living whole body protein metabolism and exercise performance during recovery from an acute bout of resistance exercise. We aimed to determine if whey protein ingestion enhances whole body net protein balance and recovery of exercise performance during overnight (10 h and 24 h recovery after whole body resistance exercise in trained men. In a double-blind crossover design, 12 trained men (76 ± 8 kg, 24 ± 4 years old, 14% ± 5% body fat; means ± standard deviation (SD performed resistance exercise in the evening prior to consuming either 25 g of whey protein (PRO; MuscleTech 100% Whey or an energy-matched placebo (CHO immediately post-exercise (0 h, and again the following morning (~10 h of recovery. A third randomized trial, completed by the same participants, involving no exercise and no supplement served as a rested control trial (Rest. Participants ingested [15N]glycine to determine whole body protein kinetics and net protein balance over 10 and 24 h of recovery. Performance was assessed pre-exercise and at 0, 10, and 24 h of recovery using a battery of tests. Net protein balance tended to improve in PRO (P = 0.064; effect size (ES = 0.61, PRO vs. CHO during overnight recovery. Over 24 h, net balance was enhanced in PRO (P = 0.036 but not in CHO (P = 0.84; ES = 0.69, PRO vs. CHO, which was mediated primarily by a reduction in protein breakdown (PRO < CHO; P < 0.01. Exercise decreased repetitions to failure (REP, maximal strength (MVC, peak and mean power, and countermovement jump performance (CMJ at 0 h (all P < 0.05 vs. Pre. At 10 h, there were small-to-moderate effects for enhanced recovery of the MVC (ES = 0.56, mean power (ES = 0.49, and CMJ variables (ES: 0.27–0.49 in PRO. At 24 h, protein supplementation improved MVC (ES = 0.76, REP (ES = 0.44, and peak power (ES = 0.55. In conclusion, whey protein supplementation enhances whole body anabolism, and may improve acute recovery of

  16. Studying RNA-protein interactions in vivo by RNA immunoprecipitation

    DEFF Research Database (Denmark)

    Selth, Luke A; Close, Pierre; Svejstrup, Jesper Q

    2011-01-01

    The crucial roles played by RNA-binding proteins in all aspects of RNA metabolism, particularly in the regulation of transcription, have become increasingly evident. Moreover, other factors that do not directly interact with RNA molecules can nevertheless function proximally to RNA polymerases an...... and have significant effects on gene expression. RNA immunoprecipitation (RIP) is a powerful technique used to detect direct and indirect interactions between individual proteins and specific RNA molecules in vivo. Here, we describe RIP methods for both yeast and mammalian cells....

  17. Nanodisc films for membrane protein studies by neutron reflection

    DEFF Research Database (Denmark)

    Bertram, Nicolas; Laursen, Tomas; Barker, Robert

    2015-01-01

    the increased stability of POR loaded MSP1E3D1 based nanodiscs in comparison to MSP1D1 based nanodiscs, neutron reflection at the silicon-solution interface showed that POR loaded MSP1E3D1 based nanodisc films had poor surface coverage. This was the case, even when incubation was carried out under conditions...... that typically gave high coverage for empty nanodiscs. The low surface coverage affects the embedded POR coverage in the nanodisc film and limits the structural information that can be extracted from membrane bound proteins within them. Thus, nanodisc reconstitution on the smaller scaffold proteins is necessary...

  18. Realization of FRC interior and exterior furniture

    Science.gov (United States)

    Šonka, Š.; Frantová, M.; Štemberk, P.; Havrda, J.; Janouch, P.

    2017-09-01

    This article deals with the implementation of fibre reinforced concrete for interior and exterior furniture. The use of fibre reinforced concrete for non-traditional and small structures brings some specifics in design and realization. These are, in particular, the design of a suitable mixture, the choice of the shape of the structure in relation to the technological possibilities of realization, the static effects and finally the actual production of the element.

  19. Calidad ambiental interior: bienestar, confort y salud

    Directory of Open Access Journals (Sweden)

    Francisco Vargas Marcos

    2005-01-01

    Full Text Available Distintas formas de interpretar las condiciones ambientales han llevado al desarrollo de conceptos tales como edificio enfermo, calidad del aire o calidad ambiental interior, todos ellos encaminados a entender la complejidad de los contaminantes en los ambientes cerrados y las implicaciones sobre la salud de la población. La propuesta de "Calidad ambiental interior" es un avance conceptual y operativo que supera ampliamente a los anteriores, puesto que orienta las acciones hacia ambientes saludables sin limitar al aire la idea de contaminación. El objetivo del trabajo es identificar las competencias y el marco legislativo que permiten actuar en la prevención de riesgos asociados a la exposición de contaminantes en ambientes interiores. Óptimas condiciones en los ambientes interiores deben redundar en salud, bienestar y confort, tanto en lo que respecta a la vida laboral como a los ámbitos donde se desarrollan las actividades cotidianas extralaborales, escolares, de descanso y de ocio. La sociedad actual exige lugares seguros, limpios y bien climatizados, para lo que es necesario integrar percepciones y exigencias de los habitantes y alcanzar un óptimo equilibrio entre estándares sociales, uso de la energía y desarrollo sostenible, buscando confort sin contaminar y sin aumentar el consumo de fuentes energéticas que degraden el medio ambiente. El desarrollo legislativo se orienta a la seguridad y la salud en los lugares de trabajo y la regulación de las sustancias químicas. La Sanidad Ambiental lleva a cabo tareas de prevención y control, participa en la ejecución de convenios internacionales de reducción de contaminantes y desechos y promueve acciones para el desarrollo de la Estrategia Europea de Salud y Medio Ambiente.

  20. Giant Planet Interior Structure and Thermal Evolution

    OpenAIRE

    Fortney, Jonathan J.; Baraffe, Isabelle; Militzer, Burkhard

    2009-01-01

    We discuss the interior structure and composition of giant planets, and how this structure changes as these planets cool and contract over time. Here we define giant planets as those that have an observable hydrogen-helium envelope, which includes Jupiter-like planets, which are predominantly H/He gas, and Neptune-like planets which are predominantly composed of elements heavier than H/He. We describe the equations of state of planetary materials and the construction of static structural mode...

  1. Gravitational Higgs mechanism in neutron star interiors

    Science.gov (United States)

    Coates, Andrew; Horbatsch, Michael W.; Sotiriou, Thomas P.

    2017-04-01

    We suggest that nonminimally coupled scalar fields can lead to modifications of the microphysics in the interiors of relativistic stars. As a concrete example, we consider the generation of a nonzero photon mass in such high-density environments. This is achieved by means of a light gravitational scalar, and the scalarization phase transition in scalar-tensor theories of gravitation. Two distinct models are presented, and phenomenological implications are briefly discussed.

  2. Interiors of the Planets [Book Review

    OpenAIRE

    Stevenson, D. J.

    1981-01-01

    The number of scientists devoted to the problems of planetary interiors (especially for planets other than the Earth) is small, appropriately so in view of the limited data base. However, the recent results from deep space missions together with recent rapid advances in high pressure physics are providing planetary modelers with well-constrained problems and solutions of limited ambiguity. These advances are important and interesting for a wide community of planetary and oth...

  3. Perancangan Interior Hershey's Chocolate World Di Surabaya

    OpenAIRE

    IGN. Ardana, Elisa Novita

    2016-01-01

    Chocolate is a food which is loved by many people, regardless of age. Currently, chocolate's type, flavor, and shapes is different and have varied. Nevertheless, the selling system of chocolate in Surabaya is still very conventional. In order for the chocolate sales to grow and become a profitable business opportunity, it is necessary to design the interior of chocolate shop that provides a challenge to the public to learn how to produce chocolate as a part of shopping activity and simultaneo...

  4. Food for the Future: A Study of Insects as a Protein Source

    Science.gov (United States)

    Riggs, S.

    2017-12-01

    This study is designed to gain a sustainable, organic food source containing the proper amino acids, minerals, and protein to sustain the needs of human life on Earth as the current economy and environment will not be able to equip the needs for the future. The hypotheses are if available protein is increased in an insect's diet then their nutritional value will increase to fulfill a human's daily protein requirements in one serving size or less for each species tested and if there is a higher content of protein in the insects, then food created with it will receive higher ratings. Protein supplements were added to an insect's natural diet to increase nutritional value. Protein value in the insects increased to fulfill a human's daily dietary protein requirement in a third of a serving size. Biuret and absorption spectrometry testing demonstrates this correlation. Insects increased protein in their body showing a positive correlation to the hypothesis. Week one, protein values doubled and tripled in some species, unexpectedly. After three weeks, protein still continued increasing. There was high success in increasing the protein value in the different species of insects chosen. Is there a taste difference benefit with a higher content of protein in the insects? Over 55% of participants rated the brownies with more protein higher than the control groups, and overall 88% preferred brownies with insects opposed to without, supporting the second hypothesis.

  5. Asymmetric interiors for small black holes

    Energy Technology Data Exchange (ETDEWEB)

    Kabat, Daniel [Department of Physics and Astronomy, Lehman College,City University of New York, Bronx NY 10468 (United States); Lifschytz, Gilad [Department of Mathematics, Faculty of Natural Science,University of Haifa, Haifa 31905 (Israel)

    2016-08-16

    We develop the representation of infalling observers and bulk fields in the CFT as a way to understand the black hole interior in AdS. We first discuss properties of CFT states which are dual to black holes. We then show that in the presence of a Killing horizon bulk fields can be decomposed into pieces we call ingoing and outgoing. The ingoing field admits a simple operator representation in the CFT, even inside a small black hole at late times, which leads to a simple CFT description of infalling geodesics. This means classical infalling observers will experience the classical geometry in the interior. The outgoing piece of the field is more subtle. In an eternal two-sided geometry it can be represented as an operator on the left CFT. In a stable one-sided geometry it can be described using entanglement via the PR construction. But in an evaporating black hole trans-horizon entanglement breaks down at the Page time, which means that for old black holes the PR construction fails and the outgoing field does not see local geometry. This picture of the interior allows the CFT to reconcile unitary Hawking evaporation with the classical experience of infalling observers.

  6. Memahami Estetika dari Sudut Pandang Desain Interior

    Directory of Open Access Journals (Sweden)

    Yunida Sofiana

    2015-07-01

    Full Text Available The term aesthetic has always become part of design. Without aesthetic, design has just a functional object. Aesthetic in design, particularly in interior design, has been influenced by many factors, which are aesthetic value, aesthetic perception, and time frame. Aesthetic has subjective meaning related to time frame and objective meaning related to implementation of element and principles of design on aesthetic term. Aesthetic perception is how we judge and see the object using our own thinking and value. Time frame is where and when the aesthetic value happens. Interior design trend right now has been influenced by technology in many ways so the concept of modern design theme is always the best choice for designer. However, using modern theme as a design concept has to be implemented as a whole theme and related to aesthetical value so that the design will gain much appreciation from others. This paper used deductive method to explain the theory of aesthetic and the implementation of aesthetic value in interior design context. Design should speak louder than it looked. 

  7. PeptideMine - A webserver for the design of peptides for protein-peptide binding studies derived from protein-protein interactomes

    Directory of Open Access Journals (Sweden)

    Gopal Balasubramanian

    2010-09-01

    Full Text Available Abstract Background Signal transduction events often involve transient, yet specific, interactions between structurally conserved protein domains and polypeptide sequences in target proteins. The identification and validation of these associating domains is crucial to understand signal transduction pathways that modulate different cellular or developmental processes. Bioinformatics strategies to extract and integrate information from diverse sources have been shown to facilitate the experimental design to understand complex biological events. These methods, primarily based on information from high-throughput experiments, have also led to the identification of new connections thus providing hypothetical models for cellular events. Such models, in turn, provide a framework for directing experimental efforts for validating the predicted molecular rationale for complex cellular processes. In this context, it is envisaged that the rational design of peptides for protein-peptide binding studies could substantially facilitate the experimental strategies to evaluate a predicted interaction. This rational design procedure involves the integration of protein-protein interaction data, gene ontology, physico-chemical calculations, domain-domain interaction data and information on functional sites or critical residues. Results Here we describe an integrated approach called "PeptideMine" for the identification of peptides based on specific functional patterns present in the sequence of an interacting protein. This approach based on sequence searches in the interacting sequence space has been developed into a webserver, which can be used for the identification and analysis of peptides, peptide homologues or functional patterns from the interacting sequence space of a protein. To further facilitate experimental validation, the PeptideMine webserver also provides a list of physico-chemical parameters corresponding to the peptide to determine the feasibility of

  8. Studies of protein structure in solution and protein folding using synchrotron small-angle x-ray scattering

    Energy Technology Data Exchange (ETDEWEB)

    Chen, Lingling [Stanford Univ., CA (United States)

    1996-04-01

    Synchrotron small angle x-ray scattering (SAXS) has been applied to the structural study of several biological systems, including the nitrogenase complex, the heat shock cognate protein (hsc70), and lysozyme folding. The structural information revealed from the SAXS experiments is complementary to information obtained by other physical and biochemical methods, and adds to our knowledge and understanding of these systems.

  9. Exploring Socio-Technical Features of Green Interior Design of Residential Buildings: Indicators, Interdependence and Embeddedness

    Directory of Open Access Journals (Sweden)

    Yan Ning

    2016-12-01

    Full Text Available This research aims to develop indicators for assessing green interior design of new residential buildings in China, grounded in the socio-technical systems approach. The research was carried out through a critical literature review and two focus group studies. The results show that the boundaries of green interior design were identified with respect to three dimensions, namely performance, methodology and stakeholders. The socio-technical systems approach argues for the recognition of the interdependence between the systems elements and the feature of embeddedness. The interdependence of the systems elements exists within each of these three dimensions and across them. It is also found that the socio-technical systems of green interior design are embedded in the social, regulatory and geographic context. Taking interior design of residential buildings as the empirical setting, this study contributes to the literature of green building assessment by presenting a socio-technical systems approach.

  10. Diffraction studies of interactions between poly(ethyleneglycol)and proteins

    Czech Academy of Sciences Publication Activity Database

    Hašek, Jindřich

    2004-01-01

    Roč. 11, 1a (2004), s. 231 ISSN 1211-5894. [European Powder Diffraction International Conference /9./. 02.09.2004-05.09.2004, Prague] R&D Projects: GA ČR GA204/02/0843 Keywords : poly(ethyleneglycol) * protein surface Subject RIV: EB - Genetics ; Molecular Biology

  11. A Study of Surface Proteins, Other Adhesins and Iron Acquiring ...

    African Journals Online (AJOL)

    By the use guinea pig blood cells this was found to be 15% MRHA and 25% MSHA strains. When tested for their iron-binding protein (IBP) production, the MRHAs were positive for IBPs while the MSHA were positive for this property in 10%. Finally, based on the results obtained conclusions and recommendations are given ...

  12. Studies of the silencing of Baculovirus DNA binding protein

    NARCIS (Netherlands)

    Quadt, I.; Lent, van J.W.M.; Knebel-Morsdorf, D.

    2007-01-01

    Baculovirus DNA binding protein (DBP) binds preferentially single-stranded DNA in vitro and colocalizes with viral DNA replication sites. Here, its putative role as viral replication factor has been addressed by RNA interference. Silencing of DBP in Autographa californica multiple

  13. Study of the strength characteristics of protein-based lightweight ...

    African Journals Online (AJOL)

    Compressive strength test was carried out on the protein-based lightweight foamed concrete produced with cement partially replaced by rice husk ash to ascertain its strength characteristics. Standard concrete cubes of 150 x 150 x 150 mm were produced using ordinary Portland cement (OPC), fine aggregate, aqueous ...

  14. Studies on new antifreeze protein from the psychrophilic diatom ...

    African Journals Online (AJOL)

    Antifreeze proteins (AFPs) are found in a wide range of species including fishes, plants, etc. They have very characteristic feature that inhibit the growth and recrystallization of ice that forms in intercellular spaces. Two expressed sequence tags (ESTs) were previously identified from salt stress cDNA library in Fragilariopsis ...

  15. Deep Interior: The first comprehensive geophysical investigation of an asteroid

    Science.gov (United States)

    Asphaug, E.; Belton, M.; Klaasen, K.; McFadden, L.; Ostro, S.; Safaeinili, A.; Scheeres, D.; Sunshine, J.; Yeomans, D.

    Near-Earth Objects (NEOs) come closer to Earth than any other celestial body, and their compositions are represented on Earth by thousands of well-studied meteorites. Yet we understand neither their origin, evolution, nor their geophysical behavior. These secrets are locked up in their unexplored interiors. Goal 1 of the NASA Strategic Plan emphasizes the requirement to catalogue and understand NEOs down to 1 km diameter. Goal 4 urges us to understand natural processes at work in the low gravity environment. Goal 5 expresses the need to explore the solar system and to learn how planets originated and evolved. In response to the NASA Strategic Plan we are proposing a NASA Discovery mission whose primary science objective is to greatly advance the realization of these Goals by conducting the first investigation of the global geophysics of an asteroid. Radio reflection data from 5 km orbit about a 1 km NEO will provide a tomographic 3D image of electromagnetic properties. Mechanical properties will be examined in the simplest possible way, using explosions to initiate seismic cratering events and to expose diverse interior units for spectroscopic analysis. Deep Interior is the lowest-risk, lowest cost path towards attaining the required characterization of NEOs. It breaks new ground for future missions to asteroids and comets and facilitates the design of reliable NEO technologies. Our science goals are as follows, and the techniques (radio science, imaging, IR spectroscopy, active surface science) will be described at this meeting: Asteroid Interiors. Radio, gravity, and seismology experiments give a complete first picture of an asteroid's deep interior, resolving inclusions, voids and unit boundaries at ˜ 30 m scales, and determining global and regional mechanical properties. Surface Geophysics. Blast experiments explore the structure and mechanics of the upper meters, demonstrate microgravity cratering, trigger natural geomorphic events, and expose subsurface

  16. Segmental isotope labeling of proteins for NMR structural study using a protein S tag for higher expression and solubility

    International Nuclear Information System (INIS)

    Kobayashi, Hiroshi; Swapna, G. V. T.; Wu, Kuen-Phon; Afinogenova, Yuliya; Conover, Kenith; Mao, Binchen; Montelione, Gaetano T.; Inouye, Masayori

    2012-01-01

    A common obstacle to NMR studies of proteins is sample preparation. In many cases, proteins targeted for NMR studies are poorly expressed and/or expressed in insoluble forms. Here, we describe a novel approach to overcome these problems. In the protein S tag-intein (PSTI) technology, two tandem 92-residue N-terminal domains of protein S (PrS 2 ) from Myxococcus xanthus is fused at the N-terminal end of a protein to enhance its expression and solubility. Using intein technology, the isotope-labeled PrS 2 -tag is replaced with non-isotope labeled PrS 2 -tag, silencing the NMR signals from PrS 2 -tag in isotope-filtered 1 H-detected NMR experiments. This method was applied to the E. coli ribosome binding factor A (RbfA), which aggregates and precipitates in the absence of a solubilization tag unless the C-terminal 25-residue segment is deleted (RbfAΔ25). Using the PrS 2 -tag, full-length well-behaved RbfA samples could be successfully prepared for NMR studies. PrS 2 (non-labeled)-tagged RbfA (isotope-labeled) was produced with the use of the intein approach. The well-resolved TROSY-HSQC spectrum of full-length PrS 2 -tagged RbfA superimposes with the TROSY-HSQC spectrum of RbfAΔ25, indicating that PrS 2 -tag does not affect the structure of the protein to which it is fused. Using a smaller PrS-tag, consisting of a single N-terminal domain of protein S, triple resonance experiments were performed, and most of the backbone 1 H, 15 N and 13 C resonance assignments for full-length E. coli RbfA were determined. Analysis of these chemical shift data with the Chemical Shift Index and heteronuclear 1 H– 15 N NOE measurements reveal the dynamic nature of the C-terminal segment of the full-length RbfA protein, which could not be inferred using the truncated RbfAΔ25 construct. CS-Rosetta calculations also demonstrate that the core structure of full-length RbfA is similar to that of the RbfAΔ25 construct.

  17. Stakeholder involvement in stages of a participatory process illustrated in interior design cases

    DEFF Research Database (Denmark)

    Vink, Peter; van Rhijn, Gu; Seim, Rikke

    2008-01-01

    In a previous study (Vink et al., 2008) an overview was made of the involvement of different stakeholders in a participatory design process. In this paper this overview was used to describe four participatory design cases focused on improvising productivity, health, and comfort by interior design....... It appeared that this overview is useful to describe the involvement in participatory interior design projects. However, it can only serve as an initial benchmark as much is dependent on the specific case at hand....

  18. Temporal trends of forest interior conditions in the United States

    Science.gov (United States)

    Kurt Riitters; James. Wickham

    2012-01-01

    Nature's benefits derived from forest interior environments cannot be sustained if the natural capital of forest interior area is not sustained. We analyzed the spatial patterns of forest loss and gain for the conterminous United States from 2001 to 2006 to determine whether forest interior environments were maintained at five spatial scales. A 1.1 percent net...

  19. Interior design students win two IDEC Student Design Competition awards

    OpenAIRE

    Watson-Bloch, Cathy

    2005-01-01

    Interior Design students in the School of Architecture + Design at Virginia Tech won two of the four awards presented in the 2004-2005 Interior Design Educators Council (IDEC) Student Design Competition. Winners were selected at the International IDEC Conference in Savannah, Ga. with Virginia Tech Interior Design students winning second place and honorable mention.

  20. Selection of an Appropriate Protein Extraction Method to Study the Phosphoproteome of Maize Photosynthetic Tissue.

    Directory of Open Access Journals (Sweden)

    Inês M Luís

    Full Text Available Often plant tissues are recalcitrant and, due to that, methods relying on protein precipitation, such as TCA/acetone precipitation and phenol extraction, are usually the methods of choice for protein extraction in plant proteomic studies. However, the addition of precipitation steps to protein extraction methods may negatively impact protein recovery, due to problems associated with protein re-solubilization. Moreover, we show that when working with non-recalcitrant plant tissues, such as young maize leaves, protein extraction methods with precipitation steps compromise the maintenance of some labile post-translational modifications (PTMs, such as phosphorylation. Therefore, a critical issue when studying PTMs in plant proteins is to ensure that the protein extraction method is the most appropriate, both at qualitative and quantitative levels. In this work, we compared five methods for protein extraction of the C4-photosynthesis related proteins, in the tip of fully expanded third-leaves. These included: TCA/Acetone Precipitation; Phenol Extraction; TCA/Acetone Precipitation followed by Phenol Extraction; direct extraction in Lysis Buffer (a urea-based buffer; and direct extraction in Lysis Buffer followed by Cleanup with a commercial kit. Protein extraction in Lysis Buffer performed better in comparison to the other methods. It gave one of the highest protein yields, good coverage of the extracted proteome and phosphoproteome, high reproducibility, and little protein degradation. This was also the easiest and fastest method, warranting minimal sample handling. We also show that this method is adequate for the successful extraction of key enzymes of the C4-photosynthetic metabolism, such as PEPC, PPDK, PEPCK, and NADP-ME. This was confirmed by MALDI-TOF/TOF MS analysis of excised spots of 2DE analyses of the extracted protein pools. Staining for phosphorylated proteins in 2DE revealed the presence of several phosphorylated isoforms of PEPC, PPDK

  1. Apply 3D model on the customized product color combination for the interior decoration

    Science.gov (United States)

    Chen, Cheih-Ying

    2013-03-01

    The customized product color interface for the interior decoration is designed to simulate the display of various color combination sofas in the interior of the room. There are 144 color combinations of the spatial image resulted from four the interior rooms and 36 popular color sofas. The image compositing technique is adopted to appear the 144 color combinations of the spatial image on computer screen. This study tests the experience of using the interface by the questionnaire for User Interface Satisfaction (QUIS). The results show that the high grade of evaluation items including wonderful, easy, satisfying, stimulating and flexible for the experience of users. Therefore, the entrepreneur who wants to display the color primarily commodity could using the customized color combination interface with 3D models for consumers to take opportunity to find the appropriate products to meet with the interior room, so as to shorten communication time between entrepreneurs and consumers.

  2. Studying Protein Synthesis-Dependent Synaptic Changes in Tuberous Sclerosis

    Science.gov (United States)

    2013-04-01

    and infantile spasm in TSC is treatable with Vigabatrin, a GABA transaminase inhibitor. This indicates that abnormal protein synthesis may skew the...microscopic duplication of 22q13 including the Shank3 gene manifested with infantile hypotonia, developmental delay and growth deficiency (6). Shank1...deviation toward hyperexcitability was not corrected at least 30 minute after rapamycin treatment (100 µM). This may be because the effect of

  3. Study on antibacterial activity of hydrogel from irradiated silk protein

    Energy Technology Data Exchange (ETDEWEB)

    Bunnak, J.; Chaisupakitsin, M. [King Mongkut' s Institute of Technology Lardkrabang, Bangkok (Thailand)

    2001-03-01

    Hydrogels for biomedical application were prepared from solution blends of 3% silk protein and 3%, 10% poly (vinyl alcohol) (PVA) and followed with irradiation. Mixture of hydrogels were gamma irradiated at 10, 20, 30, 40 and 50 kGy under N{sub 2} atmosphere. To clarify anti-bacterial activity of hydrogels, modified of the Agar disk diffusion method and American Association of Textile Chemists and Colorists, AATCC Test Method 90-1977, were carried out. The four kinds of bacteria such as Escherichia coli, Bacillus subtilis, Staphylococcus aureus and Staphylococcus epidermidis, were used. It was found that a 1:3 volume ratio of 3% silk protein and 3% PVA respectively, at 50 kGy irradiation, is suitable conditions for preparation hydrogels and trend to indicate the highest of an antibacterial activity against E. coli, B. subtilis and S. aureus. However the antibacterial activity of hydrogels against S. epidermidis was not clearly. These results are very useful to expand the application of hydrogel from irradiated silk protein to the medical products. (author)

  4. Study on antibacterial activity of hydrogel from irradiated silk protein

    International Nuclear Information System (INIS)

    Bunnak, J.; Chaisupakitsin, M.

    2001-01-01

    Hydrogels for biomedical application were prepared from solution blends of 3% silk protein and 3%, 10% poly (vinyl alcohol) (PVA) and followed with irradiation. Mixture of hydrogels were gamma irradiated at 10, 20, 30, 40 and 50 kGy under N 2 atmosphere. To clarify anti-bacterial activity of hydrogels, modified of the Agar disk diffusion method and American Association of Textile Chemists and Colorists, AATCC Test Method 90-1977, were carried out. The four kinds of bacteria such as Escherichia coli, Bacillus subtilis, Staphylococcus aureus and Staphylococcus epidermidis, were used. It was found that a 1:3 volume ratio of 3% silk protein and 3% PVA respectively, at 50 kGy irradiation, is suitable conditions for preparation hydrogels and trend to indicate the highest of an antibacterial activity against E. coli, B. subtilis and S. aureus. However the antibacterial activity of hydrogels against S. epidermidis was not clearly. These results are very useful to expand the application of hydrogel from irradiated silk protein to the medical products. (author)

  5. The study of membrane-protein /detergent interactions by neutron crystallography

    Energy Technology Data Exchange (ETDEWEB)

    Timmins, P.A.; Penel, S. [Institut Max von Laue - Paul Langevin (ILL), 38 - Grenoble (France); Pebay-Peyroula, E. [IBS- UJF Grenoble (France)

    1997-04-01

    Proteins which are found embedded in membranes can usually only be purified and studied from the point of view of structure by dissolving them in detergents. The structure of the resulting mixed protein-detergent complexes are poorly understood. An important method for studying them is through neutron diffraction of the crystalline complexes. This allows us to understand better how the proteins behave in the natural membrane as well as allowing us to visualize and hopefully improve the crystallisation process. Studies on the pore-forming protein porin using data collected on the diffractometer DB21 are described. (author). 4 refs.

  6. Fluorescence spectroscopy studies of HEK293 cells expressing DOR-Gi1alfa fusion protein; the effect of cholesterol depletion

    Czech Academy of Sciences Publication Activity Database

    Brejchová, Jana; Sýkora, Jan; Dlouhá, Kateřina; Roubalová, Lenka; Ostašov, Pavel; Vošahlíková, Miroslava; Hof, Martin; Svoboda, Petr

    2011-01-01

    Roč. 1808, č. 12 (2011), s. 2819-2829 ISSN 0005-2736 R&D Projects: GA MŠk(CZ) LC06063; GA MŠk(CZ) LC554; GA ČR(CZ) GD305/08/H037 Grant - others:GA ČR(CZ) GAP208/10/1090 Institutional research plan: CEZ:AV0Z50110509; CEZ:AV0Z40400503 Keywords : plasma membrane * cholesterol depletion * fluorescence spectroscopy * hydrophobic membrane interior * delta-opioid receptor ( DOR ), * G protein Subject RIV: BO - Biophysics Impact factor: 3.990, year: 2011

  7. Binding site of ribosomal proteins on prokaryotic 5S ribonucleic acids: a study with ribonucleases

    DEFF Research Database (Denmark)

    Douthwaite, S; Christensen, A; Garrett, R A

    1982-01-01

    ., & Garrett, R. A. (1981) Biochemistry 20, 7301--7307], reveal an extensive interaction site for protein L18 and a more localized one for L25. Generally comparable results, with a few important differences, were obtained in a study of the binding sites of the two E. coli proteins on Bacillus...... stearothermophilus 5S RNA. Several protein-induced changes in the RNA structures were identified; some are possibly allosteric in nature. The two prokaryotic 5S RNAs were also incubated with total 50S subunit proteins from E. coli and B. stearothermophilus ribosomes. Homologous and heterologous reconstitution...... experiments were performed for both RNAs. The effects of the bound proteins on the ribonuclease digestion of the RNAs could generally be correlated with the results obtained with the E. coli proteins L18 and L25, although there was evidence for an additional protein-induced conformational change in the B...

  8. A Class of Rigid Linker-bearing Glucosides for Membrane Protein Structural Study

    DEFF Research Database (Denmark)

    Sadaf, Aiman; Mortensen, Jonas S; Capaldi, Stefano

    2016-01-01

    for structural and functional analysis. Despite the availability of a large number of detergents, only a few agents are sufficiently effective at maintaining the integrity of membrane proteins to allow successful crystallization. In the present study, we describe a novel class of synthetic amphiphiles....... Members of this class conferred enhanced stability on target membrane proteins compared to conventional detergents. Because of straightforward synthesis of the novel agents and their favourable effects on a range of membrane proteins, these agents should be of wide applicability to membrane protein......Membrane proteins are amphipathic bio-macromolecules incompatible with the polar environments of aqueous media. Conventional detergents encapsulate the hydrophobic surfaces of membrane proteins allowing them to exist in aqueous solution. Membrane proteins stabilized by detergent micelles are used...

  9. Evolution of Asian Interior Arid-Zone Biota: Evidence from the Diversification of Asian Zygophyllum (Zygophyllaceae)

    Science.gov (United States)

    Li, Hong-Lei; Yu, Sheng-Xiang; Zhang, Lin-Jing; Wang, Wei

    2015-01-01

    The Asian interior arid zone is the largest desert landform system in the Northern Hemisphere, and has high biodiversity. Little is currently known about the evolutionary history of its biota. In this study, we used Zygophyllum, an important and characteristic component of the Asian interior arid zone, to provide new insights into the evolution of this biota. By greatly enlarged taxon sampling, we present the phylogenetic analysis of Asian Zygophyllum based on two plastid and one nuclear markers. Our phylogenetic analyses indicate that Asian Zygophyllum and Sarcozygium form a clade and Sarcozygium is further embedded within the shrub subclade. An integration of phylogenetic, biogeographic, and molecular dating methods indicates that Zygophyllum successfully colonized the Asian interior from Africa in the early Oligocene, and Asian Zygophyllum became differentiated in the early Miocene and underwent a burst of diversification in the late Miocene associated with the expansion of Asian interior arid lands due to orogenetic and climatic changes. Combining diversification patterns of other important components of the Asian interior arid zone, we propose a multi-stage evolution model for this biota: the late Eocene–early Oligocene origin, the early Miocene expansion, and the middle-late Miocene rapid expansion to the whole Asian interior arid zone. This study also demonstrates that, for Zygophyllum and perhaps other arid-adapted organisms, arid biomes are evolutionary cradles of diversity. PMID:26393796

  10. Reflective coatings for interior and exterior of buildings and improving thermal performance

    International Nuclear Information System (INIS)

    Joudi, Ali; Svedung, Harald; Cehlin, Mathias; Rönnelid, Mats

    2013-01-01

    Highlights: ► Increase building energy efficiency by optimizing surface optical properties. ► Study different scenarios with both interior and exterior reflective coatings. ► Combined thermal effect of both interior and exterior reflective coatings. -- Abstract: The importance of reducing building energy usage and thriving for more energy efficient architectures, has nurtured creative solutions and smart choices of materials in the last few decades. Among those are optimizing surface optical properties for both interior and exterior claddings of the building. Development in the coil-coating steel industries has now made it possible to allocate correct optical properties for steel clad buildings with improved thermal performance. Although the importance of the exterior coating and solar gain are thoroughly studied in many literatures, the effect of interior cladding are less tackled, especially when considering a combination of both interior and exterior reflective coatings. This paper contemplates the thermal behavior of small cabins with reflective coatings on both interior and exterior cladding, under different conditions and climates with the aim to clarify and point out to the potential energy saving by smart choices of clad coatings.

  11. Space station interior design: Results of the NASA/AIA space station interior national design competition

    Science.gov (United States)

    Haines, R. F.

    1975-01-01

    The results of the NASA/AIA space station interior national design competition held during 1971 are presented in order to make available to those who work in the architectural, engineering, and interior design fields the results of this design activity in which the interiors of several space shuttle size modules were designed for optimal habitability. Each design entry also includes a final configuration of all modules into a complete space station. A brief history of the competition is presented with the competition guidelines and constraints. The first place award entry is presented in detail, and specific features from other selected designs are discussed. This is followed by a discussion of how some of these design features might be applied to terrestrial as well as space situations.

  12. Cloning and characterization of chitinases from interior spruce and lodgepole pine.

    Science.gov (United States)

    Kolosova, N; Breuil, C; Bohlmann, J

    2014-05-01

    Chitinases have been implicated in the defence of conifers against insects and pathogens. cDNA for six chitinases were cloned from interior spruce (Picea glauca x engelmannii) and four from lodgepole pine (Pinus contorta). The cloned interior spruce chitinases were annotated class I PgeChia1-1 and PgeChia1-2, class II PgeChia2-1, class IV PgeChia4-1, and class VII PgeChia7-1 and PgeChia7-2; lodgepole pine chitinases were annotated class I PcChia1-1, class IV PcChia4-1, and class VII PcChia7-1 and PcChia7-2. Chitinases were expressed in Escherichia coli with maltose-binding-protein tags and soluble proteins purified. Functional characterization demonstrated chitinolytic activity for the three class I chitinases PgeChia1-1, PgeChia1-2 and PcChia1-1. Transcript analysis established strong induction of most of the tested chitinases, including all three class I chitinases, in interior spruce and lodgepole pine in response to inoculation with bark beetle associated fungi (Leptographium abietinum and Grosmannia clavigera) and in interior spruce in response to weevil (Pissodes strobi) feeding. Evidence of chitinolytic activity and inducibility by fungal and insect attack support the involvement of these chitinases in conifer defense. Copyright © 2014 Elsevier Ltd. All rights reserved.

  13. Assessment as a Barrier in Developing Design Expertise: Interior Design Student Perceptions of Meanings and Sources of Grades

    Science.gov (United States)

    Smith, Kennon M.

    2013-01-01

    This article reports on a portion of a larger qualitative study focused on a group of interior design students' perceptions of their educational experiences. Twelve interior design students enrolled in their final studio course participated in interviews intended to elicit their perceptions of key barriers encountered during their undergraduate…

  14. Structure Function Studies of Vaccinia Virus Host Range Protein K1 Reveal a Novel Functional Surface for Ankyrin Repeat Proteins

    Energy Technology Data Exchange (ETDEWEB)

    Li, Yongchao; Meng, Xiangzhi; Xiang, Yan; Deng, Junpeng (Texas-HSC); (OKLU)

    2010-06-15

    Poxvirus host tropism at the cellular level is regulated by virus-encoded host range proteins acting downstream of virus entry. The functioning mechanisms of most host range proteins are unclear, but many contain multiple ankyrin (ANK) repeats, a motif that is known for ligand interaction through a concave surface. We report here the crystal structure of one of the ANK repeat-containing host range proteins, the vaccinia virus K1 protein. The structure, at a resolution of 2.3 {angstrom}, showed that K1 consists entirely of ANK repeats, including seven complete ones and two incomplete ones, one each at the N and C terminus. Interestingly, Phe82 and Ser83, which were previously shown to be critical for K1's function, are solvent exposed and located on a convex surface, opposite the consensus ANK interaction surface. The importance of this convex surface was further supported by our additional mutagenesis studies. We found that K1's host range function was negatively affected by substitution of either Asn51 or Cys47 and completely abolished by substitution of both residues. Cys47 and Asn51 are also exposed on the convex surface, spatially adjacent to Phe82 and Ser83. Altogether, our data showed that K1 residues on a continuous convex ANK repeat surface are critical for the host range function, suggesting that K1 functions through ligand interaction and does so with a novel ANK interaction surface.

  15. Interior point decoding for linear vector channels

    International Nuclear Information System (INIS)

    Wadayama, T

    2008-01-01

    In this paper, a novel decoding algorithm for low-density parity-check (LDPC) codes based on convex optimization is presented. The decoding algorithm, called interior point decoding, is designed for linear vector channels. The linear vector channels include many practically important channels such as inter-symbol interference channels and partial response channels. It is shown that the maximum likelihood decoding (MLD) rule for a linear vector channel can be relaxed to a convex optimization problem, which is called a relaxed MLD problem

  16. Interior Design 1992 Buyers Guide issue.

    Science.gov (United States)

    1992-01-30

    The Interior Design Magazine Buyers Guide is compiled with you, the designer, in mind. So it's packed with the most comprehensive collection of sources available anyplace--arranged for fast, easy access. First, the Keyword Index presents all the Buyers Guide product categories alphabetically (see the first tab divider). Refer to the page number indicated in the Product Index (second tab divider) to view various manufacturers of products under each category heading. Addresses, phone and fax numbers, regional and international showroom/representatives are located in the A-Z Index (third tab divider) in alphabetical order. Consult the table of contents for trade associations, lighting consultants, marts, and other useful sections.

  17. Ultrafast slaving dynamics at the protein-water interface studied with 2D-IR spectroscopy

    Directory of Open Access Journals (Sweden)

    Kubarych K. J.

    2013-03-01

    Full Text Available The dynamics of hen egg white lysozyme in D2O/glycerol mixtures is studied using two-dimensional infrared spectroscopy. The hydration dynamics and the protein dynamics are studied simultaneously through vibrational probes attached to the protein surface.

  18. Testing protein leverage in lean humans: a randomised controlled experimental study.

    Directory of Open Access Journals (Sweden)

    Alison K Gosby

    Full Text Available A significant contributor to the rising rates of human obesity is an increase in energy intake. The 'protein leverage hypothesis' proposes that a dominant appetite for protein in conjunction with a decline in the ratio of protein to fat and carbohydrate in the diet drives excess energy intake and could therefore promote the development of obesity. Our aim was to test the 'protein leverage hypothesis' in lean humans by disguising the macronutrient composition of foods offered to subjects under ad libitum feeding conditions. Energy intakes and hunger ratings were measured for 22 lean subjects studied over three 4-day periods of in-house dietary manipulation. Subjects were restricted to fixed menus in random order comprising 28 foods designed to be similar in palatability, availability, variety and sensory quality and providing 10%, 15% or 25% energy as protein. Nutrient and energy intake was calculated as the product of the amount of each food eaten and its composition. Lowering the percent protein of the diet from 15% to 10% resulted in higher (+12±4.5%, p = 0.02 total energy intake, predominantly from savoury-flavoured foods available between meals. This increased energy intake was not sufficient to maintain protein intake constant, indicating that protein leverage is incomplete. Urinary urea on the 10% and 15% protein diets did not differ statistically, nor did they differ from habitual values prior to the study. In contrast, increasing protein from 15% to 25% did not alter energy intake. On the fourth day of the trial, however, there was a greater increase in the hunger score between 1-2 h after the 10% protein breakfast versus the 25% protein breakfast (1.6±0.4 vs 25%: 0.5±0.3, p = 0.005. In our study population a change in the nutritional environment that dilutes dietary protein with carbohydrate and fat promotes overconsumption, enhancing the risk for potential weight gain.

  19. Mass spectroscopic characteristics of low molecular weight proteins extracted from calcium oxalate stones: preliminary study.

    Science.gov (United States)

    Chen, Wen-Chi; Lai, Chien-Chen; Lai, Chein-Cheng; Tsai, Yuhsin; Tsai, Yu-Hsin; Lin, Wei-Yong; Tsai, Fuu-Jen

    2008-01-01

    It is believed that boundary compositions of matrix proteins might play a role in stone formation; however, few proteomic studies concerning matrix proteins in urinary stones have been conducted. In this study, we extracted low molecular weight proteins from calcium oxalate stones and measured their characteristic patterns by mass spectroscopy. A total of 10 stones were surgically removed from patients with urolithiasis. Proteins were extracted from the stones and identified by one-dimensional electrophoresis (sodium dodecyl sulfate buffer [SDS]-polyacrylamide gel electrophoresis [SDS-PAGE]). After in-gel digest, samples were analyzed by the surface-enhanced laser desorption ionization-time of flight (SELDI-TOF) technique. The peptide sequences were analyzed from the data of mass spectroscopy. Proteins were identified from Database Search (SwissProt Protein Database; Swiss Institute of Bioinformatics; http://www.expasy.org/sprot) on a MASCOT server (Matrix Science Ltd.; http://www.matrixscience.com). A total of three bands of proteins (27, 18, and 14 kDa) were identified from SDS-PAGE in each stone sample. A database search (SwissProt) on a MASCOT server revealed that the most frequently seen proteins from band 1 (27 kDa) were leukocyte elastase precursor, cathepsin G precursor, azurocidin precursor, and myeloblastin precursor (EC 3.4.21.76) (leukocyte proteinase 3); band 2 (18 kDa) comprised calgranulin B, eosinophil cationic protein precursor, and lysozyme C precursor; band 3 (14 kDa) showed neutrophil defensin 3 precursor, calgranulin A, calgranulin C, and histone H4. The modifications and deamidations found from the mass pattern of these proteins may provide information for the study of matrix proteins. Various lower molecular weight proteins can be extracted from calcium oxalate stones. The characteristic patterns and their functions of those proteins should be further tested to investigate their roles in stone formation. (c) 2008 Wiley-Liss, Inc.

  20. Production of recombinant proteins in Mycobacterium smegmatis for structural and functional studies.

    Science.gov (United States)

    Bashiri, Ghader; Baker, Edward N

    2015-01-01

    Protein production using recombinant DNA technology has a fundamental impact on our understanding of biology through providing proteins for structural and functional studies. Escherichia coli (E. coli) has been traditionally used as the default expression host to over-express and purify proteins from many different organisms. E. coli does, however, have known shortcomings for obtaining soluble, properly folded proteins suitable for downstream studies. These shortcomings are even more pronounced for the mycobacterial pathogen Mycobacterium tuberculosis, the bacterium that causes tuberculosis, with typically only one third of proteins expressed in E. coli produced as soluble proteins. Mycobacterium smegmatis (M. smegmatis) is a closely related and non-pathogenic species that has been successfully used as an expression host for production of proteins from various mycobacterial species. In this review, we describe the early attempts to produce mycobacterial proteins in alternative expression hosts and then focus on available expression systems in M. smegmatis. The advantages of using M. smegmatis as an expression host, its application in structural biology and some practical aspects of protein production are also discussed. M. smegmatis provides an effective expression platform for enhanced understanding of mycobacterial biology and pathogenesis and for developing novel and better therapeutics and diagnostics. © 2014 The Protein Society.

  1. A Critical Appraisal of Quantitative Studies of Protein Degradation in the Framework of Cellular Proteostasis

    Directory of Open Access Journals (Sweden)

    Beatriz Alvarez-Castelao

    2012-01-01

    Full Text Available Protein homeostasis, proteostasis, is essential to understand cell function. Protein degradation is a crucial component of the proteostatic mechanisms of the cell. Experiments on protein degradation are nowadays present in many investigations in the field of molecular and cell biology. In the present paper, we focus on the different experimental approaches to study protein degradation and present a critical appraisal of the results derived from steady-state and kinetic experiments using detection of unlabelled and labelled protein methodologies with a proteostatic perspective. This perspective allows pinpointing the limitations in interpretation of results and the need of further experiments and/or controls to establish “definitive evidence” for the role of protein degradation in the proteostasis of a given protein or the entire proteome. We also provide a spreadsheet for simple calculations of mRNA and protein decays for mimicking different experimental conditions and a checklist for the analysis of experiments dealing with protein degradation studies that may be useful for researchers interested in the area of protein turnover.

  2. QM/MM Molecular Dynamics Studies of Metal Binding Proteins

    Directory of Open Access Journals (Sweden)

    Pietro Vidossich

    2014-07-01

    Full Text Available Mixed quantum-classical (quantum mechanical/molecular mechanical (QM/MM simulations have strongly contributed to providing insights into the understanding of several structural and mechanistic aspects of biological molecules. They played a particularly important role in metal binding proteins, where the electronic effects of transition metals have to be explicitly taken into account for the correct representation of the underlying biochemical process. In this review, after a brief description of the basic concepts of the QM/MM method, we provide an overview of its capabilities using selected examples taken from our work. Specifically, we will focus on heme peroxidases, metallo-β-lactamases, α-synuclein and ligase ribozymes to show how this approach is capable of describing the catalytic and/or structural role played by transition (Fe, Zn or Cu and main group (Mg metals. Applications will reveal how metal ions influence the formation and reduction of high redox intermediates in catalytic cycles and enhance drug metabolism, amyloidogenic aggregate formation and nucleic acid synthesis. In turn, it will become manifest that the protein frame directs and modulates the properties and reactivity of the metal ions.

  3. Conformationally Preorganized Diastereomeric Norbornane-Based Maltosides for Membrane Protein Study

    DEFF Research Database (Denmark)

    Das, Manabendra; Du, Yang; Ribeiro, Orquidea

    2017-01-01

    Detergents are essential tools for functional and structural studies of membrane proteins. However, conventional detergents are limited in their scope and utility, particularly for eukaryotic membrane proteins. Thus, there are major efforts to develop new amphipathic agents with enhanced properties......-dodecyl-β-d-maltoside (DDM) for all membrane proteins tested. Efficacy of the individual NBMs varied depending on the overall detergent shape and alkyl chain length. Specifically, NBMs with no kink in the lipophilic region conferred greater stability to the proteins than NBMs with a kink. In addition, long alkyl chain NBMs...... novel maltoside detergents with enhanced protein-stabilizing properties but also suggests that overall detergent geometry has an important role in determining membrane protein stability. Notably, this is the first systematic study on the effect of detergent kinking on micellar properties and associated...

  4. Special Features of Using Secondary Materials in the Interior Design of Public Dining Establishments

    Science.gov (United States)

    Kuznetsova, Irina; Hapchuk, Olena; Lukinov, Vitaly

    2017-10-01

    This article analyses the latest publications studying the use and practical application of secondary resources as raw materials in design. This analysis is based on the list of secondary resources and their applications in interior decoration. In particular, the interiors of public catering enterprises were analysed. Restaurants with different functional purposes that were classified into several categories with specific peculiarities of interior design were identified. This article presents and describes different types of public catering enterprises based on those categories. The interior design of a public catering enterprise is regarded as a considerably complex system. Different types of secondary materials were reviewed to identify the most frequently used materials for interior space design. This article describes the main peculiarities of the use of secondary materials and presents examples of their practical application. The function of secondary materials in the interior design of public catering enterprises were detected and reviewed. On the basis of the analysis, several directions for the practical application of our results in the field of public catering enterprise design were suggested.

  5. Reducing interior temperature resulting from solar energy using three-dimensional surface patterns

    Directory of Open Access Journals (Sweden)

    Shiang-Jiun Lin

    2015-05-01

    Full Text Available Excessive solar energy can significantly increase interior temperatures and yield great energy demands for air conditioning. Whereas reducing energy consumptions is very crucial today, this article employs patterned glass technology which incorporates linear patterns throughout the exterior surface of glass to attenuate the solar effect on the interior thermal field based on theoretical and experimental studies. By periodically imposing linearly three-dimensional patterns over the outer surface of window glass, the analytical results indicate that the interior solar heat is able to be reduced, as the surface patterns increase the incident angle and/or decrease the solar energy loading on the patterned glass material. Moreover, the interior solar heat can be strongly affected by the pattern design. According to thermally measured results, the trapezoidal patterned glass having 3-mm-top-edged patterned members yields lower temperature on the interior surface of glass comparing with that for the trapezoidal patterns having 6-mm-top edges. Therefore, making the least non-sloped feature or flat plane appearing on the patterned glass helps decrease the interior temperature resulting from solar energy.

  6. Development of a lectin binding assay to differentiate between recombinant and endogenous proteins in pharmacokinetic studies of protein-biopharmaceuticals.

    Science.gov (United States)

    Weber, Alfred; Minibeck, Eva; Scheiflinger, Friedrich; Turecek, Peter L

    2015-04-10

    Human glycoproteins, expressed in hamster cell lines, show similar glycosylation patterns to naturally occurring human molecules except for a minute difference in the linkage of terminal sialic acid: both cell types lack α2,6-galactosyl-sialyltransferase, abundantly expressed in human hepatocytes and responsible for the α2,6-sialylation of circulating glycoproteins. This minute difference, which is currently not known to have any physiological relevance, was the basis for the selective measurement of recombinant glycoproteins in the presence of their endogenous counterparts. The assay is based on using the lectin Sambucus nigra agglutinin (SNA), selectively binding to α2,6-sialylated N-glycans. Using von Willebrand factor (VWF), factor IX (FIX), and factor VIIa (FVIIa), it was demonstrated that (i) the plasma-derived proteins, but not the corresponding recombinant proteins, specifically bind to SNA and (ii) this binding can be used to deplete the plasma-derived proteins. The feasibility of this approach was confirmed in spike-recovery studies for all three recombinant coagulation proteins in human plasma and for recombinant VWF (rVWF) in macaque plasma. Analysis of plasma samples from macaques after administration of recombinant and a plasma-derived VWF demonstrated the suitability and robustness of this approach. Data showed that rVWF could be selectively measured without changing the ELISAs and furthermore revealed the limitations of baseline adjustment using a single measurement of the predose concentration only. The SNA gel-based depletion procedure can easily be integrated in existing procedures as a specific sample pre-treatment step. While ELISA-based methods were used to measure the recombinant coagulation proteins in the supernatants obtained by depletion, this procedure is applicable for all biochemical analyses. Copyright © 2015 Elsevier B.V. All rights reserved.

  7. Protein a resin lifetime study: Evaluation of protein a resin performance with a model-based approach in continuous capture.

    Science.gov (United States)

    Behere, Ketki; Cha, Bumjoon; Yoon, Seongkyu

    2018-01-22

    A modified shrinking core model (MSCM) has been used to describe the mechanism for the degradation of Protein A resin particles taking place under continuous chromatographic operation. The model is based on the hypothetical shrinkage of the boundary layer of the resin particles, which house the active Protein A ligands within their pores. The caustic during the sanitization phase of chromatography has been determined to cause the Protein A ligand degradation. Protein A resins provided by manufacturers possess unique caustic stability, which has been used in MSCM to appraise the ligand degradation. The kinetic model utilized semiempirical parameters including diffusion constant, rate constant, stoichiometric factor, and reaction order. The parameters were estimated from column breakthrough experiments to simulate continuous Protein A chromatography for three distinct resins. The reaction order has been identified as the key parameter for predicting the degradation kinetics. The recorded reaction orders vary for three different resins with the resin B showing the highest reaction order of 4 and lowest being 1.65 for the resin C. The model can predict the effects of caustic on resin performance and displayed that minimal degradation of the resins A and B occurred, when exposed to 0.1 N and 0.2N NaOH, retaining up to 96% binding capacity after 240 cycles. The adsorption study conducted for the resin B demonstrated the dynamic physical and chemical changes transpiring through the life cycle of the resin, further supported the degradation model. The performance data demonstrate that the resin B exhibits the desirable performance, with higher reaction order indicating slower resin degradation, higher binding capacities, and increased sustenance of this binding capacity for extended duration. The degradation model can be extended to build effective cleaning strategies for continuous downstream processing.

  8. Dietary protein is associated with musculoskeletal health independently of dietary pattern: the Framingham Third Generation Study.

    Science.gov (United States)

    Mangano, Kelsey M; Sahni, Shivani; Kiel, Douglas P; Tucker, Katherine L; Dufour, Alyssa B; Hannan, Marian T

    2017-03-01

    Background: Above-average dietary protein, as a single nutrient, improves musculoskeletal health. Evaluating the link between dietary protein and musculoskeletal health from a whole-diet perspective is important, as dietary guidelines focus on dietary patterns. Objective: We examined the prospective association of novel dietary protein food clusters (derived from established dietary pattern techniques) with appendicular lean mass (ALM), quadriceps strength (QS), and bone mineral density (BMD) in 2986 men and women, aged 19-72 y, from the Framingham Third Generation Study. Design: Total protein intake was estimated by food-frequency questionnaire in 2002-2005. A cluster analysis was used to classify participants into mutually exclusive groups, which were determined by using the percentage of contribution of food intake to overall protein intake. General linear modeling was used to 1 ) estimate the association between protein intake (grams per day) and BMD, ALM, appendicular lean mass normalized for height (ALM/ht 2 ), and QS (2008-2011) and to 2 ) calculate adjusted least-squares mean outcomes across quartiles of protein (grams per day) and protein food clusters. Results: The mean ± SD age of subjects was 40 ± 9 y; 82% of participants met the Recommended Daily Allowance (0.8 g · kg body weight -1 · d -1 ). The following 6 dietary protein food clusters were identified: fast food and full-fat dairy, fish, red meat, chicken, low-fat milk, and legumes. BMD was not different across quartiles of protein intake ( P -trend range = 0.32-0.82); but significant positive trends were observed for ALM, ALM/ht 2 ( P dietary protein is associated with ALM and QS but not with BMD. In this study, dietary protein food patterns do not provide further insight into beneficial protein effects on muscle outcomes. © 2017 American Society for Nutrition.

  9. Studies on protein characteristics and toxic constituents of Simarouba glauca oilseed meal.

    Science.gov (United States)

    Govindaraju, K; Darukeshwara, J; Srivastava, Alok K

    2009-06-01

    In order to exploit the protein rich (47.7 g/100g) simarouba meal in food/feed, studies were conducted on its chemical composition with emphasis on protein characteristics and toxic constituents. Simarouba meal contained high calcium (143 mg/100g) and sodium (79 mg/100g). Saponins with triterpenoid aglycone (3.7 g/100g), alkaloids (1.01 g/100g), phenolics (0.95 g/100g) and phytic acid (0.73 g/100g) were the major toxic constituents identified in simarouba meal. TLC and HPLC results indicated that among different fractions of simarouba saponins, one dominant fraction accounted for about 28%. Proteins of simarouba recorded high in vitro digestibility (88%). SDS-PAGE revealed four major protein bands in molecular weight ranges of 20-24, 36-45 and 55-66 kDa. Apart from, glutamic acid (23.43 g/100g protein) and arginine (10.75 g/100g protein), simarouba protein contained high essential amino acids like leucine (7.76 g/100g protein), lysine (5.62 g/100g protein) and valine (6.12 g/100g protein). Among nutritional indices, simarouba meal recorded a good EAA Index (75.02), C-PER (1.90) and PDCAAS (1.0-Adult group).

  10. Mini-G proteins: Novel tools for studying GPCRs in their active conformation.

    Science.gov (United States)

    Nehmé, Rony; Carpenter, Byron; Singhal, Ankita; Strege, Annette; Edwards, Patricia C; White, Courtney F; Du, Haijuan; Grisshammer, Reinhard; Tate, Christopher G

    2017-01-01

    Mini-G proteins are the engineered GTPase domains of Gα subunits. They couple to GPCRs and recapitulate the increase in agonist affinity observed upon coupling of a native heterotrimeric G protein. Given the small size and stability of mini-G proteins, and their ease of expression and purification, they are ideal for biophysical studies of GPCRs in their fully active state. The first mini-G protein developed was mini-Gs. Here we extend the family of mini-G proteins to include mini-Golf, mini-Gi1, mini-Go1 and the chimeras mini-Gs/q and mini-Gs/i. The mini-G proteins were shown to couple to relevant GPCRs and to form stable complexes with purified receptors that could be purified by size exclusion chromatography. Agonist-bound GPCRs coupled to a mini-G protein showed higher thermal stability compared to the agonist-bound receptor alone. Fusion of GFP at the N-terminus of mini-G proteins allowed receptor coupling to be monitored by fluorescence-detection size exclusion chromatography (FSEC) and, in a separate assay, the affinity of mini-G protein binding to detergent-solubilised receptors was determined. This work provides the foundation for the development of any mini-G protein and, ultimately, for the structure determination of GPCRs in a fully active state.

  11. Computational methods in preformulation study for pharmaceutical solid dosage forms of therapeutic proteins

    Science.gov (United States)

    Majee, Sutapa Biswas; Biswas, Gopa Roy

    2017-06-01

    Design and delivery of protein-based biopharmaceuticals needs detailed planning and strict monitoring of intermediate processing steps, storage conditions and container-closure system to ensure a stable, elegant and biopharmaceutically acceptable dosage form. Selection of manufacturing process variables and conditions along with packaging specifications can be achieved through properly designed preformulation study protocol for the formulation. Thermodynamic stability and biological activity of therapeutic proteins depend on folding-unfolding and three-dimensional packing dynamics of amino acid network in the protein molecule. Lack of favourable environment may cause protein aggregation with loss in activity and even fatal immunological reaction. Although lyophilization can enhance the stability of protein-based formulations in the solid state, it can induce protein unfolding leading to thermodynamic instability. Formulation stabilizers such as preservatives can also result in aggregation of therapeutic proteins. Modern instrumental techniques in conjunction with computational tools enable rapid and accurate prediction of amino acid sequence, thermodynamic parameters associated with protein folding and detection of aggregation "hot-spots." Globular proteins pose a challenge during investigations on their aggregation propensity. Biobetter therapeutic monoclonal antibodies with enhanced stability, solubility and reduced immunogenic potential can be designed through mutation of aggregation-prone zones. The objective of the present review article is to focus on the various analytical methods and computational approaches used in the study of thermodynamic stability and aggregation tendency of therapeutic proteins, with an aim to develop optimal and marketable formulation. Knowledge of protein dynamics through application of computational tools will provide the essential inputs and relevant information for successful and meaningful completion of preformulation studies on

  12. [Application of UV spectroscopy in structural studies of metal centre of metal-protein].

    Science.gov (United States)

    Liang, H; Zhou, Y; Shen, P

    1997-02-01

    The principle of UV spectroscopy applied in structural studies of metal centre of complexes is introduced in this paper. Several examples prove that such spectroscopy is an effective technical method in structural studies of metal centre of metal-protein.

  13. Polyacrylamide gel electrophoresis-SDS as a tool to study myofibrillar proteins. A review.

    Directory of Open Access Journals (Sweden)

    Perez-Chabela, M. Lourdes

    2015-12-01

    Full Text Available Miofibrillar proteins are part of land and sea animals’ muscle. Nonetheless, even when muscle proteins are the same type of proteins, their structure, rigor mortis time, and biochemical process associated to muscle to meat conversion, are different among animal species. This review has the aim to describe the advantages of SDS-polyacrylamide gel electrophoresis (SDS-PAGE in the study of myofibrillar proteins structure, besides the influence of many parameters on this technique to obtain an electrophoretic profile. Applications of this technique as a diagnostic tool in the food science, ecology and health are described as well.

  14. Total synthesis and structure–activity relationship studies of a series of selective G protein inhibitors

    DEFF Research Database (Denmark)

    Xiong, Xiaofeng; Zhang, Hang; Underwood, Christina R.

    2016-01-01

    G proteins are key mediators of G protein-coupled receptor signalling, which facilitates a plethora of important physiological processes. The cyclic depsipeptides YM-254890 and FR900359 are the only known specific inhibitors of the Gq subfamily of G proteins; however, no synthetic route has been...... that both YM-254890 and FR900359 are highly potent inhibitors of Gq signalling, with FR900359 being the most potent. These natural products and their analogues represent unique tools for explorative studies of G protein inhibition....

  15. Housekeeping proteins: How useful are they in skeletal muscle diabetes studies and muscle hypertrophy models?

    Science.gov (United States)

    Fortes, Marco Aurélio Salomão; Marzuca-Nassr, Gabriel Nasri; Vitzel, Kaio Fernando; da Justa Pinheiro, Carlos Hermano; Newsholme, Philip; Curi, Rui

    2016-07-01

    The use of Western blot analysis is of great importance in research, and the measurement of housekeeping proteins is commonly used for loading controls. However, Ponceau S staining has been shown to be an alternative to analysis of housekeeping protein levels as loading controls in some conditions. In the current study, housekeeping protein levels were measured in skeletal muscle hypertrophy and streptozotocin-induced diabetes experimental models. The following housekeeping proteins were investigated: glyceraldehyde-3-phosphate dehydrogenase (GAPDH), β-actin, α-tubulin, γ-tubulin, and α-actinin. Evidence is presented that Ponceau S is more reliable than housekeeping protein levels for specific protein quantifications in Western blot analysis. Copyright © 2016 Elsevier Inc. All rights reserved.

  16. Dynamics of proteins and of their hydration layer studied by neutron scattering and additional biophysical methods

    International Nuclear Information System (INIS)

    Gallat, Francois-Xavier

    2011-01-01

    This thesis work focused on the dynamics of proteins, surrounded by their hydration layer, a water shell around the protein vital for its biological function. Each of these components is accompanied by a specific dynamics which union reforms the complex energy landscape of the system. The joint implementation of selective deuteration, incoherent neutron scattering and tera-hertz spectroscopy allowed to explore the dynamics of proteins and that of the hydration shell. The influence of the folding state of protein on its dynamics has been studied by elastic neutron scattering. Globular proteins were less dynamic than its intrinsically disordered analogues. Themselves appear to be stiffer than non-physiological unfolded proteins. The oligomerization state and the consequences on the dynamics were investigated. Aggregates of a globular protein proved to be more flexible than the soluble form. In contrast, aggregates of a disordered protein showed lower average dynamics compared to the soluble form. These observations demonstrate the wide range of dynamics among the proteome. Incoherent neutron scattering experiences on the hydration layer of globular and disordered proteins have yielded information on the nature of water motion around these proteins. The measurements revealed the presence of translational motions concomitant with the onset of the transition dynamics of hydration layers, at 220 K. Measurements have also shown a stronger coupling between a disordered protein and its hydration water, compared to a globular protein and its hydration shell. The nature of the hydration layer and its influence on its dynamics has been explored with the use of polymers that mimic the water behavior and that act as a source of flexibility for the protein. Eventually, the dynamics of methyl groups involved in the dynamical changes observed at 150 and 220 K, was investigated. (author) [fr

  17. A study of the thermal denaturation of the S-layer protein from Lactobacillus salivarius

    Science.gov (United States)

    Lighezan, Liliana; Georgieva, Ralitsa; Neagu, Adrian

    2012-09-01

    Surface layer (S-layer) proteins display an intrinsic self-assembly property, forming monomolecular crystalline arrays, identified in outermost structures of the cell envelope in many organisms, such as bacteria and archaea. Isolated S-layer proteins also possess the ability to recrystallize into regular lattices, being used in biotechnological applications, such as controlling the architecture of biomimetic surfaces. To this end, the stability of the S-layer proteins under high-temperature conditions is very important. In this study, the S-layer protein has been isolated from Lactobacillus salivarius 16 strain of human origin, and purified by cation-exchange chromatography. Using circular dichroism (CD) spectroscopy, we have investigated the thermal denaturation of the S-layer protein. The far- and near-UV CD spectra have been collected, and the temperature dependence of the CD signal in these spectral domains has been analyzed. The variable temperature results show that the secondary and tertiary structures of the S-layer protein change irreversibly due to the heating of the sample. After the cooling of the heated protein, the secondary and tertiary structures are partially recovered. The denaturation curves show that the protein unfolding depends on the sample concentration and on the heating rate. The secondary and tertiary structures of the protein suffer changes in the same temperature range. We have also detected an intermediate state in the protein denaturation pathway. Our results on the thermal behavior of the S-layer protein may be important for the use of S-layer proteins in biotechnological applications, as well as for a better understanding of the structure and function of S-layer proteins.

  18. Combining size-exclusion chromatography with differential hydrogen-deuterium exchange to study protein conformational changes.

    Science.gov (United States)

    Makarov, Alexey A; Helmy, Roy

    2016-01-29

    Methods for protein characterization are being actively developed based on the growing importance of protein therapies and applications. The goal of this study was to demonstrate the use of size-exclusion chromatography (SEC) in combination with differential hydrogen-deuterium exchange (HDX) to compare protein global conformational changes at different solution conditions. Using chaotropic mobile phase additive, differential HDX was used to detect a number of solvent accessible labile protons of protein on-column at pH and temperature conditions which provided unrestricted intrinsic H/D exchange (all-or-nothing approach). Varying SEC on-column conditions allowed for protein conformational changes to be observed. Temperature and pressure were independently studied with regards to their effect on the proteins' (insulin, cytochrome C, ubiquitin, and myoglobin) conformational changes in the solution. The obtained ΔHDX profiles revealed protein conformational changes in solution under varied conditions manifested as the difference in the number of protons exchanged to deuterons, or vice-versa. The approach described in this manuscript could prove useful for protein batch-to-batch comparisons, for optimization of chemical reactions with enzyme as catalyst or for protein chemical modification reactions. Copyright © 2016 Elsevier B.V. All rights reserved.

  19. Room temperature phosphorescence study on the structural flexibility of single tryptophan containing proteins

    Science.gov (United States)

    Kowalska-Baron, Agnieszka; Gałęcki, Krystian; Wysocki, Stanisław

    2015-01-01

    In this study, we have undertaken efforts to find correlation between phosphorescence lifetimes of single tryptophan containing proteins and some structural indicators of protein flexibility/rigidity, such as the degree of tryptophan burial or its exposure to solvent, protein secondary and tertiary structure of the region of localization of tryptophan as well as B factors for tryptophan residue and its immediate surroundings. Bearing in mind that, apart from effective local viscosity of the protein/solvent matrix, the other factor that concur in determining room temperature tryptophan phosphorescence (RTTP) lifetime in proteins is the extent of intramolecular quenching by His, Cys, Tyr and Trp side chains, the crystallographic structures derived from the Brookhaven Protein Data Bank were also analyzed concentrating on the presence of potentially quenching amino acid side chains in the close proximity of the indole chromophore. The obtained results indicated that, in most cases, the phosphorescence lifetimes of tryptophan containing proteins studied tend to correlate with the above mentioned structural indicators of protein rigidity/flexibility. This correlation is expected to provide guidelines for the future development of phosphorescence lifetime-based method for the prediction of structural flexibility of proteins, which is directly linked to their biological function.

  20. Mass Spectrometry in Studies of Protein Thiol Chemistry and Signaling: Opportunities and Caveats

    Science.gov (United States)

    Devarie Baez, Nelmi O.; Reisz, Julie A.; Furdui, Cristina M.

    2014-01-01

    Mass spectrometry (MS) has become a powerful and widely utilized tool in the investigation of protein thiol chemistry, biochemistry, and biology. Very early biochemical studies of metabolic enzymes have brought to light the broad spectrum of reactivity profiles that distinguish cysteine thiols with functions in catalysis and protein stability from other cysteine residues in proteins. The development of MS methods for the analysis of proteins using electrospray ionization (ESI) or matrix-assisted laser desorption/ionization (MALDI) coupled with the emergence of high-resolution mass analyzers have been instrumental in advancing studies of thiol modifications, both in single proteins and within the cellular context. This article reviews MS instrumentation and methods of analysis employed in investigations of thiols and their reactivity toward a range of small biomolecules. A selected number of studies are detailed to highlight the advantages brought about by the MS technologies along with the caveats associated with these analyses. PMID:25261734

  1. Protein Intake and Mobility Limitation in Community-Dwelling Older Adults: the Health ABC Study

    NARCIS (Netherlands)

    Houston, Denise K.; Tooze, Janet A.; Garcia, Katelyn; Visser, Marjolein; Rubin, Susan; Harris, Tamara B.; Newman, Anne B.; Kritchevsky, Stephen B.

    OBJECTIVES: The current Recommended Dietary Allowance (RDA) for protein is based on short-term nitrogen balance studies in young adults and may underestimate the amount needed to optimally preserve physical function in older adults. We examined the association between protein intake and the onset of

  2. High-Throughput Production of Proteins in E. coli for Structural Studies.

    Science.gov (United States)

    Black, Charikleia; Barker, John J; Hitchman, Richard B; Kwong, Hok Sau; Festenstein, Sam; Acton, Thomas B

    2017-01-01

    We have developed a standardized and efficient workflow for high-throughput (HT) protein expression in E. coli and parallel purification which can be tailored to the downstream application of the target proteins. It includes a one-step purification for the purposes of functional assays and a two-step protocol for crystallographic studies, with the option of on-column tag removal.

  3. Proteomic study on the stability of proteins in bovine, camel, and caprine milk sera after processing

    NARCIS (Netherlands)

    Zhang, Lina; Boeren, Sjef; Smits, Marcel; Hooijdonk, van Toon; Vervoort, Jacques; Hettinga, Kasper

    2016-01-01

    Milk proteins have been shown to be very sensitive to processing. This study aims to investigate the changes of the bovine, camel, and caprine milk proteins after freezing, pasteurization (62 °C, 30 min), and spray drying by proteomic techniques, filter-aided sample preparation (FASP) and

  4. Solution scattering studies on a virus capsid protein as a building block for nanoscale assemblies

    NARCIS (Netherlands)

    Comellas Aragones, M.; Comellas-Aragones, Marta; Sikkema, Friso D.; Delaittre, Guillaume; Terry, Ann E.; King, Stephen M.; Visser, Dirk; Heenan, Richard K.; Nolte, Roeland J.M.; Cornelissen, Jeroen Johannes Lambertus Maria; Feiters, Martin C.

    2011-01-01

    Self-assembled protein cages are versatile building blocks in the construction of biomolecular nanostructures. Because of the defined assembly behaviour the cowpea chlorotic mottle virus (CCMV) protein is often used for such applications. Here we report a detailed solution scattering study of the

  5. Contribution to the study of proteins and peptides structure by hydrogen isotopic exchange

    International Nuclear Information System (INIS)

    Nabedryk-Viala, Eliane.

    1978-01-01

    Development of hydrogen exchange measurement methods to study the structure and the molecular interaction of globular protein molecules in aqueous solution (ribonuclease A, cytochrome c, coupling factors of chloroplasts), in peptide hormones in trifluoroethanol solution (angiotensin II, corticotropin) and in proteins of membranes (rhodopsin) [fr

  6. New penta-saccharide-bearing tripod amphiphiles for membrane protein structure studies

    DEFF Research Database (Denmark)

    Ehsan, Muhammad; Ghani, Lubna; Du, Yang

    2017-01-01

    Integral membrane proteins either alone or as complexes carry out a range of key cellular functions. Detergents are indispensable tools in the isolation of membrane proteins from biological membranes for downstream studies. Although a large number of techniques and tools, including a wide variety...

  7. The interaction of M13 coat protein with lipid bilayers : a spectroscopic study

    NARCIS (Netherlands)

    Sanders, J.C.

    1992-01-01

    In this thesis a small part of the reproductive cycle of the M13 bacteriophage is studied in more detail, namely the interaction of the major coat protein (MW 5240) with lipid bilayers. During the infection process is the major coat protein of M13 bacteriophage stored in the cytoplasm

  8. Studies on two calcium-binding proteins from squid optic lobe

    International Nuclear Information System (INIS)

    Sheldon, A.

    1988-01-01

    Investigations focused on the physicochemical and functional properties of squid calcium-binding protein (SCaBP) and squid calmodulin (SCaM). The physiochemical studies included characterization of Ca 2+ - and Mg 2+ -binding properties, and the effects of metal ion-binding on protein conformation. These studies were performed using various ionic conditions, including those physiological for the squid. Ca 2+ -binding by SCaBP, SCaM, and bovine brain calmodulin (BCaM) (for comparison) was measured by equilibrium dialysis. All three proteins bound 4 Ca 2+ per mol protein under each set of ionic conditions. Under conditions physiological for the squid, both the squid proteins bound Ca 2+ over a similar range of free Ca 2+ concentrations. Ca 2+ - and Mg 2+ -induced changes in the conformation of the proteins were studied by polyacrylamide gel electrophoresis, fluphenazine-Sepharose affinity chromatography, and ultraviolet absorption difference spectroscopy. The functional studies focused on the identification of squid optic lobe proteins which interacted with SCaBP and SCaM in a Ca 2+ - dependent manner. These proteins were identified by SCaBP- and SCaM-Sepharose affinity chromatography, an immunoblotting technique using a polyclonal anti-SCaBP antibody, and a 125 I-calmodulin overlay procedure

  9. Small angle X-ray studies of protein-polymer interactions

    International Nuclear Information System (INIS)

    Torriani, Iris; Oliveira, Cristiano L.P. de; Almeida, Nara L.; Loh, Watson

    2003-01-01

    Full text: The interaction between biological macromolecules and non-adsorbing polymers is considered of utmost importance in the study of protein crystallization processes and in the study of a large number of protein-polymer systems or artificial surfaces used in medical procedures, in which polymeric materials are in contact with blood proteins. The structural information furnished by small angle X-ray scattering (SAXS) experiments can be used to describe protein-polymer interaction in solution mixtures considering the dispersion as a two-component system. In this work, two proteins, lysozyme and bovine serum albumin (BSA), were studied in the presence of Poly(ethylene oxide) (PEO), various EO/PO copolymers of varied composition and Poly(ethylene glycol) (PEG). Thermal stability of both lysozyme and BSA was studied in the presence of these polymers. X-ray scattering experiments were performed at the SAXS beamline of the Laboratorio Nacional de Luz Sincrotron, Campinas, SP, using the facility available for liquid dispersions under controlled temperature. Room temperature measurements were aimed at detecting possible polymer-protein interactions. Thermal denaturation processes were studied in some of these systems in order to check the stabilizing effect of some of the polymers used, at fixed temperatures of 25, 50, 60 and 70 deg C. At 80 deg C, using a real time data acquisition system, structural changes could be followed as a function of time in a sequence of frames that show denaturation and aggregation of the proteins. Real space analysis of the intensity functions was performed using a mathematical expression derived for the form factor of a system of particles of different shapes. The pair distance distribution functions of each component of the system could be calculated separately. The possibility of complex formation in the case of the proteins studied is not supported by our results. The presence of polymers may affect the protein-protein interaction

  10. Development of a system for the study of protein-protein interactions in planta: characterization of a TATA-box binding protein complex in Oryza sativa.

    Science.gov (United States)

    Zhong, Jingping; Haynes, Paul A; Zhang, Shiping; Yang, Xinping; Andon, Nancy L; Eckert, Donna; Yates, John R; Wang, Xun; Budworth, Paul

    2003-01-01

    We describe a simple, rapid method for protein complex purification in planta. Using a biotin peptide as an affinity tag with TATA-box binding protein (TBP), 86 unique proteins present in the purified complex were identified by tandem mass spectrometry. We identified proteins known to be associated with TBP, and many other proteins involved in pre-mRNA processing and chromatin remodeling. The identification of these novel protein-protein associations will upon further investigations provide new insights into the mechanisms of mRNA transcription and pre-mRNA processing.

  11. Protein-protein interactions in the plant Golgi apparatus, studied with FRET acceptor photobleaching technique

    DEFF Research Database (Denmark)

    Poulsen, Christian Peter

    The focus of this Ph.D. study has primarily been to utilize and adapt the acceptor photobleaching technique for measuring of Förster resonance energy transfer (FRET) to tudy proteinprotein interactions (PPIs) among glycosyltranseferases (GTs) and nucleotide ugar transporters (NSTs) localized...... in rhamnogalacturonan-I biosynthesis was proved and further supported by BiFC and non-reducing gel. Finally, association among four different NSTs (AtUTr5, AtUTr5B, At5g41760 and At4g35335) was shown as both homo- and heterodimeric complexes. In conclusion, our findings point to the notion that enzymes and transporters...

  12. Systematic study of plasma and serum proteins in the pig; Etude systematique des proteines plasmatiques et seriques du porc

    Energy Technology Data Exchange (ETDEWEB)

    Daburon, F.; Nizza, P.; Hatchikian, C.; Schmidt, J.-P. [Commissariat a l' Energie Atomique (France)

    1966-07-01

    This work has been carried out in the framework of the determination of the physiological constants of a normal pig. The aim was to study the serum and plasma proteins of this animal species, the ultimate object being to discover whether the qualitative and quantitative changes in these proteins can make a significant contribution to the establishment of a biological dosimetry for irradiated pigs. The serum and plasma from a normal pig were analyzed first by various simple electrophoretic methods and then by immuno-electrophoresis. As a result of the particular characteristics of pig serum we have gradually been led to make numerous modifications to the techniques used for human serums or for those of small laboratory animals. Much careful work and patience were required in order to obtain reproducible results. (authors) [French] Ce travail se situe dans le cadre de la determination des constantes physiologiques du porc normal. il s'agissait de proceder a l'etude des proteines seriques et plasmatiques de cette espece animale, le but ulterieur etant de savoir si les modifications qualitatives et quantitatives de ces proteines pourront representer une contribution valable a l'etablissement d'une dosimetrie biologique chez le porc irradie. Le serum et le plasma du porc normal ont ete analyses d'abord par diverses methodes electrophoretiques simples puis par immunoelectrophorese. Les caracteristiques particulieres du serum de porc nous ont conduits a apporter progressivement de nombreuses modifications aux techniques utilisees pour des serums humains ou de petits animaux de laboratoire. L'obtention de resultats reproductible a exige beaucoup de patience et de minutie. (auteurs)

  13. Seismic Constraints on Interior Solar Convection

    Science.gov (United States)

    Hanasoge, Shravan M.; Duvall, Thomas L.; DeRosa, Marc L.

    2010-01-01

    We constrain the velocity spectral distribution of global-scale solar convective cells at depth using techniques of local helioseismology. We calibrate the sensitivity of helioseismic waves to large-scale convective cells in the interior by analyzing simulations of waves propagating through a velocity snapshot of global solar convection via methods of time-distance helioseismology. Applying identical analysis techniques to observations of the Sun, we are able to bound from above the magnitudes of solar convective cells as a function of spatial convective scale. We find that convection at a depth of r/R(solar) = 0.95 with spatial extent l < 30, where l is the spherical harmonic degree, comprise weak flow systems, on the order of 15 m/s or less. Convective features deeper than r/R(solar) = 0.95 are more difficult to image due to the rapidly decreasing sensitivity of helioseismic waves.

  14. Wall grid structure for interior scene synthesis

    KAUST Repository

    Xu, Wenzhuo

    2015-02-01

    We present a system for automatically synthesizing a diverse set of semantically valid, and well-arranged 3D interior scenes for a given empty room shape. Unlike existing work on layout synthesis, that typically knows potentially needed 3D models and optimizes their location through cost functions, our technique performs the retrieval and placement of 3D models by discovering the relationships between the room space and the models\\' categories. This is enabled by a new analytical structure, called Wall Grid Structure, which jointly considers the categories and locations of 3D models. Our technique greatly reduces the amount of user intervention and provides users with suggestions and inspirations. We demonstrate the applicability of our approach on three types of scenarios: conference rooms, living rooms and bedrooms.

  15. La temperatura del interior de la tierra

    Directory of Open Access Journals (Sweden)

    Eslava R. Jesús A.

    1993-10-01

    Full Text Available The problem of defining the Earth interior temperature is analized from Heat Flow observations and the acceptance of convection processes in the mantle. Comparative analyses of thermal, adiabatic, and melting point profiles, allow to obtain the optimum temperature profile, wich fits the seismic model of a liquid external core.

    EI problema de definir la temperatura del interior de la Tierra, se analiza a partir de las observaciones del flujo térmico y la aceptación de procesos de convección en el manto.

    Análisis comparativos de perfiles térmicos, adiabáticos y de puntos de fusión, permiten obtener un perfil óptimo de distribución de temperaturas, que además satisface la observación sísmica de un núcleo externo líquido.

  16. Membrane proteins: functional and structural studies using reconstituted proteoliposomes and 2-D crystals

    Directory of Open Access Journals (Sweden)

    Rigaud J.-L.

    2002-01-01

    Full Text Available Reconstitution of membrane proteins into lipid bilayers is a powerful tool to analyze functional as well as structural areas of membrane protein research. First, the proper incorporation of a purified membrane protein into closed lipid vesicles, to produce proteoliposomes, allows the investigation of transport and/or catalytic properties of any membrane protein without interference by other membrane components. Second, the incorporation of a large amount of membrane proteins into lipid bilayers to grow crystals confined to two dimensions has recently opened a new way to solve their structure at high resolution using electron crystallography. However, reconstitution of membrane proteins into functional proteoliposomes or 2-D crystallization has been an empirical domain, which has been viewed for a long time more like "black magic" than science. Nevertheless, in the last ten years, important progress has been made in acquiring knowledge of lipid-protein-detergent interactions and has permitted to build upon a set of basic principles that has limited the empirical approach of reconstitution experiments. Reconstitution strategies have been improved and new strategies have been developed, facilitating the success rate of proteoliposome formation and 2-D crystallization. This review deals with the various strategies available to obtain proteoliposomes and 2-D crystals from detergent-solubilized proteins. It gives an overview of the methods that have been applied, which may be of help for reconstituting more proteins into lipid bilayers in a form suitable for functional studies at the molecular level and for high-resolution structural analysis.

  17. Biochemical studies on gamma irradiated male rats fed on whey protein concentrate

    International Nuclear Information System (INIS)

    Mohamed, N.E; Anwar, M.M.; El-bostany, N.A.

    2010-01-01

    This study carried out to investigate the possible role of whey protein protein concentrate in ameliorating some biochemical disorders induced in gamma irradiated male rats. Forty eight male albino rats were divided into four equal groups: Group 1 fed on normal diet during experimental period. Group 2 where the diet contain 15 % whey protein concentrate instead of soybean protein . Group 3 rats were exposed to whole body gamma radiation with single dose of 5 Gy and fed on the normal diet. Group 4 rate exposed to 5 Gy then fed on diet contain 15 % whey protein concentrate, the rats were decapitated after two and four weeks post irradiation. Exposure to whole body irradiation caused significant elevation of serum ALT, AST, glucose, urea, creatinine and total triiodothyronine with significant decrease in total protein, albumin and thyroxin. Irradiated rats fed on whey protein concentrate revealed significant improvement of some biochemical parameters. It could be conclude that whey protein concentrate may be considered as a useful protein source for reducing radiation injury via metabolic pathway.

  18. Some physicochemical and nutritional studies on Karkade (Hibiscus sabdariffa) seed proteins

    International Nuclear Information System (INIS)

    Ahmed, Saif Aldein Bashir

    1998-01-01

    Seeds of Karkade (Al-Rahad variety) were obtained from western Sudan, and investigated perliminary for their chemical composition, the oil of the seed also was investigated. The factors affecting protein extractability such as PH, salt type and concentration and solvent to flour ratio, were studied. The anti nutritional factors investigated were protease inhibitors, gossypol, phytates and tanins, means of inactivation such as heat treatment for trypsin inhibitor and differential solubility for phytates were proposed. Protein fractionation due to solubility was carried out. Other physiochemical properties included polyacrylamide gel electrophersis, ultra violet absorption spectrum and gel filtration pattern. The functional properties investigated were bulk density, solubility, water and oil absorption, emulsifying activity and viscosity. Karkade seed was found to be rich in protein, oil and mineral matter. The amino acid profile of karkade seed proteins indicated the presence of most of essential amino acids in adequate amounts. The relative net protein ratio (RNPR) was found to be 0.75. Protein digestibility-corrected amino acid score of karkade seed protein was found to be 0.63 ( compared to casein in 1.0). The molecular weights of the protein fractions investigated by SDS- PAGE were in the range of 12-82 kDa. UV absorption spectra reflects changes in the molecular structure (native proteins absorb at 280 nm and also interaction with other components e.g. nucleic acids, poly phenols.....etc). Gel filtration pattern reflect changes in molecular size

  19. Qualitative and quantitative assessment of interior moisture buffering by enclosures

    DEFF Research Database (Denmark)

    Janssen, Hans; Roels, Staf

    2009-01-01

    The significance of interior humidity in attaining sustainable, durable, healthy and comfortable buildings is increasingly recognised. Given their significant interaction, interior humidity appraisals need a qualitative and/or quantitative assessment of interior moisture buffering. While...... suggested protocols for the simple and fast measurement of the moisture buffer potential of interior elements allow qualitative assessment, none of these are currently dependable for a wide range of moisture production regimes. In response to these flaws, this paper introduces the production......-adaptive characterisation of the moisture buffer potential of interior elements and corroborates their superposition toward a room-enclosure moisture buffer potential. It is verified that this enables qualitative comparison of enclosures in relation to interior moisture buffering. It is moreover demonstrated that it forms...

  20. Reproducibility of mass spectrometry based protein profiles for diagnosis of breast cancer across clinical studies

    DEFF Research Database (Denmark)

    Callesen, Anne Kjærgaard; Vach, Werner; Jørgensen, Per E

    2008-01-01

    Serum protein profiling by mass spectrometry has achieved attention as a promising technology in oncoproteomics. We performed a systematic review of published reports on protein profiling as a diagnostic tool for breast cancer. The MEDLINE, EMBASE, and COCHRANE databases were searched for original...... studies reporting discriminatory protein peaks for breast cancer as either protein identity or as m/ z values in the period from January 1995 to October 2006. To address the important aspect of reproducibility of mass spectrometry data across different clinical studies, we compared the published lists...... indicating some convergence toward a set of common discriminating, reproducible peaks for breast cancer. These peaks should be further characterized for identification of the protein identity and validated as biomarkers for breast cancer....

  1. A polarizable embedding DFT study of one-photon absorption in fluorescent proteins

    DEFF Research Database (Denmark)

    Beerepoot, Maarten; Steindal, Arnfinn H.; Kongsted, Jacob

    2013-01-01

    A theoretical study of the one-photon absorption of five fluorescent proteins (FPs) is presented. The absorption properties are calculated using a polarizable embedding approach combined with density functional theory (PE-DFT) on the wild-type green fluorescent protein (wtGFP) and several of its...... shift from vacuum to protein. This is the first computational study of a range of fluorescent proteins using a polarizable embedding potential....... optimization of the chromophores within a frozen protein environment is needed in order to reproduce the experimental trends. Explicit account of polarization in the force field is not needed to yield the correct trend between the different FPs, but is necessary for reproducing the experimentally observed red...

  2. NDE [nondestructive evaluation] of the interiors of components: Technology evaluation

    International Nuclear Information System (INIS)

    Goldberg, L.O.

    1990-01-01

    Sea Test Services (STS) is investigating the need for and feasibility of integrating robotic and advanced NDE technology for inspecting nuclear power plants from their interiors. This project covers Phase I of a two-phase program. Phase I concentrates on identifying currently available robotic NDE systems that are readily amenable to integration. Tasks are identified as follows: identify the needs of utilities for interior inspections; document current practices in the nuclear industry and in technology transfer from other industries that require internal robotic NDE; determine the limits of sensitivity that can be expected of an integrated robotic-NDE system; and investigate remote visual inspection relative to determining system sensitivity and provide industry with guidelines for remote visual inspection. Primary focus has been on NDE integration for underwater remote-operated vehicles (UROVs) and pipe crawlers and on manipulators for use on UROVs and pipe crawlers. A limited investigation has been made on remote-operated devices such as the programmable and remote (PaR) tool. This study will disseminate to nuclear utilities information that should assist in making decisions on the use of integrated robotic-NDE systems

  3. Kajian Estetika Interior Restoran Boncafe Di Jalan Pregolan Surabaya

    OpenAIRE

    Fanuel W., Yemima

    2014-01-01

    Boncafe Pregolan restaurant is a restaurant in Surabaya located at Pregolan Street 2, Tegal sari, Central Surabaya. Boncafe Pregolan restaurant built in 2007. The interior of Boncafe Pregolan restaurant is divided into several rooms, main entrance area, main dining area I, main dining area II, smoking dining area, and terrace dining. The aesthetic of interior Boncafe Pregolan restaurant is interesting to be analyzed, because of the interior's plays inside. The design principles implemented t...

  4. Protein requirements in healthy adults: a meta-analysis of nitrogen balance studies.

    Science.gov (United States)

    Li, Min; Sun, Feng; Piao, Jian Hua; Yang, Xiao Guang

    2014-08-01

    The goal of this study was to analyze protein requirements in healthy adults through a meta-analysis of nitrogen balance studies. A comprehensive search for nitrogen balance studies of healthy adults published up to October 2012 was performed, each study were reviewed, and data were abstracted. The studies were first evaluated for heterogeneity. The average protein requirements were analyzed by using the individual data of each included studies. Study site climate, age, sex, and dietary protein source were compared. Data for 348 subjects were gathered from 28 nitrogen balance studies. The natural logarithm of requirement for 348 individuals had a normal distribution with a mean of 4.66. The estimated average requirement was the exponentiation of the mean of the log requirement, 105.64 mg N/kg•d. No significant differences between adult age, source of dietary protein were observed. But there was significant difference between sex and the climate of the study site (P<0.05). The estimated average requirement and recommended nutrient intake of the healthy adult population was 105.64 mg N/kg•d (0.66 g high quality protein/kg•d) and 132.05 mg N/kg•d (0.83 g high quality protein/kg•d), respectively. Copyright © 2014 The Editorial Board of Biomedical and Environmental Sciences. Published by China CDC. All rights reserved.

  5. Studies on the protein and sulfur amino acid requirements of young bobwhite quail

    Science.gov (United States)

    Serafin, J.A.

    1977-01-01

    Four experiments were conducted with purified diets to examine the influence of protein level and to estimate the sulfur amino acid (S.A.A.) requirement of young Bobwhite quail (Colinus virginianus). These studies demonstrated (I) that 26% protein was sufficient for rapid growth when the diet was supplemented with methionine; (2) that diets containing higher levels of protein (29.3% and 31.3%) failed to support satisfactory growth unless they contained supplemental methionine; and (3) that young Bobwhite quail require no more than 1.0% sulfur-containing amino acids for optimal growth and efficiency of feed utilization. A fifth experiment was conducted to examine the protein and S.A.A. requirements of young Bobwhite quail using practical rations and to compare results with those obtained with purified diets. Diets containing 24%, 26% and 28% protein were supplied with and without supplemental methionine in a five week study. Results showed significant growth responses to protein and supplemental methionine. Responses showed that Bobwhite quail require no more than 26% protein for maximum growth and efficiency of feed utilization when the S.A.A. level of the diet was approximately 1.0%. The results were in close agreement with those obtained with purified diets. These findings define more precisely than had been known the quantitative requirements of young Bobwhite quail for protein and for the S.A.A. necessary for optimal growth.

  6. Incorporating information on predicted solvent accessibility to the co-evolution-based study of protein interactions.

    Science.gov (United States)

    Ochoa, David; García-Gutiérrez, Ponciano; Juan, David; Valencia, Alfonso; Pazos, Florencio

    2013-01-27

    A widespread family of methods for studying and predicting protein interactions using sequence information is based on co-evolution, quantified as similarity of phylogenetic trees. Part of the co-evolution observed between interacting proteins could be due to co-adaptation caused by inter-protein contacts. In this case, the co-evolution is expected to be more evident when evaluated on the surface of the proteins or the internal layers close to it. In this work we study the effect of incorporating information on predicted solvent accessibility to three methods for predicting protein interactions based on similarity of phylogenetic trees. We evaluate the performance of these methods in predicting different types of protein associations when trees based on positions with different characteristics of predicted accessibility are used as input. We found that predicted accessibility improves the results of two recent versions of the mirrortree methodology in predicting direct binary physical interactions, while it neither improves these methods, nor the original mirrortree method, in predicting other types of interactions. That improvement comes at no cost in terms of applicability since accessibility can be predicted for any sequence. We also found that predictions of protein-protein interactions are improved when multiple sequence alignments with a richer representation of sequences (including paralogs) are incorporated in the accessibility prediction.

  7. The study of the intercellular trafficking of the fusion proteins of herpes simplex virus protein VP22.

    Science.gov (United States)

    Xue, Xiaodong; Huang, Jianhua; Wang, Huishan

    2014-01-01

    Genetic modifications can improve the therapeutic efficacy of mesenchymal stem cell (MSC) transplantation in myocardial infarction. However, so far, the efficiency of MSC modification is very low. Seeking for a more efficient way of MSC modification, we investigated the possibility of employing the intercellular trafficking capacity of the herpes simplex virus type-1 tegument protein VP22 on the enhancement of MSC modification. Plasmids pVP22-myc, pVP22-EGFP, pEGFP-VP22, pVP22-hBcl-xL and phBcl-xL-VP22 were constructed for the expressions of the myc-tagged VP22 and the fusion proteins VP22-EGFP, EGFP-VP22, VP22-hBcl-xL and hBcl-xL-VP22. MSCs were isolated from rat bone marrow and the surface markers were identified by Flowcytometry. COS-1 cells were transfected with the above plasmids and co-cultured with untransfected MSCs, the intercellular transportations of the constructed proteins were studied by immunofluorescence. The solubility of VP22-hBcl-xL and hBcl-xL-VP22 was analyzed by Western blot. VP22-myc could be expressed in and spread between COS-1 cells, which indicates the validity of our VP22 expression construct. Flowcytometry analysis revealed that the isolated MSCs were CD29, CD44, and CD90 positive and were negative for the hematopoietic markers, CD34 and CD45. The co-culturing and immunofluorescence assay showed that VP22-myc, VP22-EGFP and EGFP-VP22 could traffic between COS-1 cells and MSCs, while the evidence of intercellular transportation of VP22-hBcl-xL and hBcl-xL-VP22 was not detected. Western blot analysis showed that VP22-hBcl-xL and hBcl-xL-VP22 were both insoluble in the cell lysate suggesting interactions of the fusion proteins with other cellular components. The intercellular trafficking of VP22-myc, VP22-EGFP and EGFP-VP22 between COS-1 cells and MSCs presents an intriguing prospect in the therapeutic application of VP22 as a delivery vehicle which enhances genetic modifications of MSCs. However, VP22-hBcl-xL and hBcl-xL-VP22 failed to

  8. The Unheimliche Approach in the Making of Interiors

    Directory of Open Access Journals (Sweden)

    Karel Deckers

    2013-12-01

    Full Text Available ‘The (ReCreative Workings of Existential Anguish in Interior Architecture’ aims to understand, and potentially incorporate, the unheimliche into interior-architectural design teaching. My inquiry addresses a paradoxical and disquieting force inside interiors that does not intimidate, but rather stimulates, the growth of imagination and creativity through design. How can one define the limits of one’s own certainties and how to overcome them even if they cause existential anguish? I will argue that existential anguish in interiors emerges in the tension between a particular belonging to existing affiliations and the fresh unfamiliarity of unexpected encounters. My inquiry complements prevailing values and norms in interior architecture as preset by society (identity, commodities, light, sight, and so on. Interior-architectural unheimlichkeit may engage in a disruptive design approach that triggers and allows the growth of other values, such as empathy, in interior architecture. The unheimliche may specify a small yet existential part of interior architecture as a discipline. How can existential anguish become a (recreative agency in design teaching? It can be argued that a series of pedagogic experiments entitled ‘Onheimelijk Studios’, as collectively organized with and by student co-researchers at the St Lucas School of Architecture, Belgium, contributes to the research of existential anguish through the designing and making of interiors.

  9. Changing sources and sinks of carbon in boreal ecosystems of Interior Alaska: Current and future perspectives

    Science.gov (United States)

    Douglas, T. A.; Jones, M.; Hiemstra, C. A.

    2012-12-01

    Future climate scenarios predict a roughly 5°C increase in mean annual air temperatures for the Alaskan Interior over the next 80 years. Increasing temperatures and greater frequency and severity of climate-induced disturbances such as wildfires will be enough to initiate permafrost degradation in many areas of Alaska, leading to major changes in surface hydrology and ecosystem structure and function. This, in turn, is expected to alter the current inventories of carbon sources and sinks in the region and provide a management challenge for carbon itemization efforts. To assist land managers in adapting and planning for potential changes in Interior Alaska carbon cycling we synthesize information on climate, ecosystem processes, vegetation, and soil, permafrost, and hydrologic regimes in Interior Alaska. Our goal is to provide an assessment of the current and likely future regime of Interior Alaska carbon sources and sinks. For our carbon assessment we: 1) synthesize the most recent results from numerous studies on the carbon cycle with a focus on research from the Alaskan boreal biome, 2) assemble a summary of estimates of carbon sources in soil and vegetation in Interior Alaska, 3) categorize carbon sources and sinks for predominant Interior Alaska ecosystems, and 4) identify expected changes in sources and sinks with climate change and human activities. This information is used to provide recommendations on potential actions land managers can take to minimize carbon export from the boreal forest. Though the results from our project are geared primarily toward policy makers and land managers we also provide recommendations for filling research gaps that currently present uncertainty in our understanding of the carbon cycle in boreal forest ecosystems of Interior Alaska.

  10. Formation of Oxides in the Interior of Friction Stir Welds

    Science.gov (United States)

    Schneider, Judy; Chen, Po; Nunes, Arthur C., Jr.

    2016-01-01

    In friction stir welding (FSWing) the actual solid state joining takes place between the faying surfaces which form the weld seam. Thus the seam trace is often investigated for clues when the strength of the weld is reduced. Aluminum and its alloys are known to form a native, protective oxide on the surface. If these native surface oxides are not sufficiently broken up during the FSW process, they are reported to remain in the FSW interior and weaken the bond strength. This type of weld defect has been referred to as a lazy "S", lazy "Z", joint line defect, kissing bond, or residual oxide defect. Usually these defects are mitigated by modification of the process parameters, such as increased tool rotation rate, which causes a finer breakup of the native oxide particles. This study proposes that there may be an alternative mechanism for formation of oxides found within the weld nugget. As the oxidation rate increases at elevated temperatures above 400ºC, it may be possible for enhanced oxidation to occur on the interior surfaces during the FSW process from entrained air entering the seam gap. Normally, FSWs of aluminum alloys are made without a purge gas and it is unknown how process parameters and initial fit up could affect a potential air path into the interior during the processing. In addition, variations in FSW parameters, such as the tool rotation, are known to have a strong influence on the FSW temperature which may affect the oxidation rate if internal surfaces are exposed to entrained air. A series of FSWs were made in 3 different thickness panels of AA2219 (0.95, 1.27 and 1.56 cm) at 2 different weld pitches. As the thickness of the panels increased, there was an increased tendency for a gap to form in advance of the weld tool. If sufficient air is able to enter the workpiece gap prior to consolidation, the weld temperature can increase the oxidation rate on the interior surfaces. These oxidation rates would also be accelerated in areas of localized

  11. Computational Simulations to Predict Creatine Kinase-Associated Factors: Protein-Protein Interaction Studies of Brain and Muscle Types of Creatine Kinases

    Directory of Open Access Journals (Sweden)

    Wei-Jiang Hu

    2011-01-01

    Full Text Available Creatine kinase (CK; EC 2.7.3.2 is related to several skin diseases such as psoriasis and dermatomyositis. CK is important in skin energy homeostasis because it catalyzes the reversible transfer of a phosphoryl group from MgATP to creatine. In this study, we predicted CK binding proteins via the use of bioinformatic tools such as protein-protein interaction (PPI mappings and suggest the putative hub proteins for CK interactions. We obtained 123 proteins for brain type CK and 85 proteins for muscle type CK in the interaction networks. Among them, several hub proteins such as NFKB1, FHL2, MYOC, and ASB9 were predicted. Determination of the binding factors of CK can further promote our understanding of the roles of CK in physiological conditions.

  12. An electrophoretic study of the soluble lens proteins from the Indian mackerel, Rastrelliger kanagurta (Cuv)

    Digital Repository Service at National Institute of Oceanography (India)

    Menezes, M.R.

    Soluble eye lens nuclei proteins of the Indian mackerel Rastrelliger kanagurta were studied by cellogel electrophoresis, to see whether there are any intra species variations. A distinct pattern characterised by the number of bands, mobility...

  13. Preliminary study on plasma proteins in pregnant and non-pregnant female dogs.

    Science.gov (United States)

    Szczubiał, Marek; Wawrzykowski, Jacek; Dąbrowski, Roman; Krawczyk, Magdalena; Kankofer, Marta

    2017-07-15

    In this study, we used a combined approach based on 2-dimensional electrophoresis (2-DE), difference in gel electrophoresis (DIGE), and mass spectrometry (MS) to identify the plasma protein composition in pregnant female dogs and compared it with non-pregnant female dogs. We used the plasma samples obtained from four female dogs during I, II, and III thirds of pregnancy, three days after parturition, as well as from four non-pregnant female dogs in diestrus phase. Analysis of 2-DE gel image exhibited of 249 protein spots. The intensity of staining of 35 spots differed significantly (P dogs. We used matrix-assisted laser desorption/ionization-time of flight-mass spectrometry (MALDI TOF MS) to identify 47 spots corresponding to 52 different proteins. Five identified protein spots, including zinc finger BED domain-containing protein 5, hemoglobin subunit beta-2, integrator complex subunit 7, apolipoprotein A-I, and glutamyl aminopeptidase were differentially presented in the plasma of pregnant and non-pregnant female dogs. To the best of our knowledge, this is the first report on the plasma protein profile of pregnant and non-pregnant female dogs. In this study, we identified proteins that have not been previously identified in dogs. Our findings showed that numerous protein spots were differentially presented in the plasma of female dogs during normal pregnancy. Although we identified only a limited number of differentially presented proteins, our study demonstrated that the plasma protein profile changed during pregnancy in female dogs, which suggests its importance in maintaining pregnancy. Further studies are necessary to define complete plasma protein profile of pregnant female dogs and to identify all proteins that are differentially presented in the pregnant animals compared with the non-pregnant ones. In addition, studies are warranted to explain the role of those proteins in maintaining the pregnancy and their usefulness in detection of early pregnancy

  14. System Cost Analysis for an Interior Permanent Magnet Motor

    Energy Technology Data Exchange (ETDEWEB)

    Peter Campbell

    2008-08-01

    The objective of this program is to provide an assessment of the cost structure for an interior permanent magnet ('IPM') motor which is designed to meet the 2010 FreedomCAR specification. The program is to evaluate the range of viable permanent magnet materials for an IPM motor, including sintered and bonded grades of rare earth magnets. The study considers the benefits of key processing steps, alternative magnet shapes and their assembly methods into the rotor (including magnetization), and any mechanical stress or temperature limits. The motor's costs are estimated for an annual production quantity of 200,000 units, and are broken out into such major components as magnetic raw materials, processing and manufacturing. But this is essentially a feasibility study of the motor's electromagnetic design, and is not intended to include mechanical or thermal studies as would be done to work up a selected design for production.

  15. Membrane protein stoichiometry studied in intact mammalian cells using liquid-phase electron microscopy.

    Science.gov (United States)

    DE Jonge, N

    2018-02-01

    Receptor membrane proteins in the plasma membranes of cells respond to extracellular chemical signals by conformational changes, spatial redistribution, and (re-)assembly into protein complexes, for example, into homodimers (pairs of the same protein type). The functional state of the proteins can be determined from information about how subunits are assembled into protein complexes. Stoichiometric information about the protein complex subunits, however, is generally not obtained from intact cells but from pooled material extracted from many cells, resulting in a lack of fundamental knowledge about the functioning of membrane proteins. First, functional states may dramatically differ from cell to cell on account of cell heterogeneity. Second, extracting the membrane proteins from the plasma membrane may lead to many artefacts. Liquid-phase scanning transmission electron microscopy (STEM), in short liquid STEM, is a new technique capable of determining the locations of individual membrane proteins within the intact plasma membranes of cells in liquid. Many tens of whole cells can readily be imaged. It is possible to analyse the stoichiometry of membrane proteins in single cells while accounting for heterogenic cell populations. Liquid STEM was used to image epidermal growth factor receptors in whole COS7 cells. A study of the dimerisation of the HER2 protein in breast cancer cells revealed the presence of rare cancer cells in which HER2 was in a different functional state than in the bulk cells. Stoichiometric information about receptors is essential not only for basic science but also for biomedical application because they present many important pharmaceutical targets. © 2017 The Authors Journal of Microscopy © 2017 Royal Microscopical Society.

  16. A two-hybrid assay to study protein interactions within the secretory pathway.

    Directory of Open Access Journals (Sweden)

    Danielle H Dube

    Full Text Available Interactions of transcriptional activators are difficult to study using transcription-based two-hybrid assays due to potent activation resulting in false positives. Here we report the development of the Golgi two-hybrid (G2H, a method that interrogates protein interactions within the Golgi, where transcriptional activators can be assayed with negligible background. The G2H relies on cell surface glycosylation to report extracellularly on protein-protein interactions occurring within the secretory pathway. In the G2H, protein pairs are fused to modular domains of the reporter glycosyltransferase, Och1p, and proper cell wall formation due to Och1p activity is observed only when a pair of proteins interacts. Cells containing interacting protein pairs are identified by selectable phenotypes associated with Och1p activity and proper cell wall formation: cells that have interacting proteins grow under selective conditions and display weak wheat germ agglutinin (WGA binding by flow cytometry, whereas cells that lack interacting proteins display stunted growth and strong WGA binding. Using this assay, we detected the interaction between transcription factor MyoD and its binding partner Id2. Interfering mutations along the MyoD:Id2 interaction interface ablated signal in the G2H assay. Furthermore, we used the G2H to detect interactions of the activation domain of Gal4p with a variety of binding partners. Finally, selective conditions were used to enrich for cells encoding interacting partners. The G2H detects protein-protein interactions that cannot be identified via traditional two-hybrid methods and should be broadly useful for probing previously inaccessible subsets of the interactome, including transcriptional activators and proteins that traffic through the secretory pathway.

  17. Deep Interior Mission: Imaging the Interior of Near-Earth Asteroids Using Radio Reflection Tomography

    Science.gov (United States)

    Safaeinili, A.; Asphaug, E.; Belton, M.; Klaasen, K.; Ostro, S.; Plaut, J.; Yeomans, D.

    2004-12-01

    Near-Earth asteroids are important exploration targets since they provide clues to the evolution of the solar system. They are also of interest since they present a clear danger to Earth in the future. Our mission objective is to image the internal structure of two NEOs using radio reflection tomography (RRT), in order to explore the record of asteroid origin and impact evolution, and to test the fundamental hypothesis that these important members of the solar system are rubble piles rather than consolidated bodies. Our mission's RRT technique is analogous to doing a ``CAT scan" of the asteroid from orbit. Closely sampled radar echoes are processed to yield volumetric maps of mechanical and compositional boundaries, and measure interior material dielectric properties. The RRT instrument is a radar that operates at 5 and 15 MHz with two 30-m (tip-to-tip) dipole antennas that are used in a cross-dipole configuration. The radar transmitter and receiver electronics have heritage from JPL's MARSIS contribution to Mars Express, and the antenna is similar to systems used in IMAGE and LACE missions. The 5-MHz channel is designed to penetrate >1 km of basaltic rock, and 15-MHz penetrates a few hundred meters or more. In addition to RRT volumetric imaging, we use a redundant color cameras to explore the surface expressions of unit boundaries, in order to relate interior radar imaging to what is observable from spacecraft imaging and from Earth. The camera also yields stereo color imaging for geology and RRT-related compositional analysis. Gravity and high fidelity geodesy are used to explore how interior structure is expressed in shape, density, mass distribution and spin. Deep interior has two targets (S-type 1999 ND43 and V-type Nyx ) whose composition bracket the diversity of solar system materials that we are likely to encounter, and are richly complementary.

  18. Development of a Novel Green Fluorescent Protein-Based Binding Assay to Study the Association of Plakins with Intermediate Filament Proteins.

    Science.gov (United States)

    Favre, Bertrand; Begré, Nadja; Bouameur, Jamal-Eddine; Borradori, Luca

    2016-01-01

    Protein-protein interactions are fundamental for most biological processes, such as the formation of cellular structures and enzymatic complexes or in signaling pathways. The identification and characterization of protein-protein interactions are therefore essential for understanding the mechanisms and regulation of biological systems. The organization and dynamics of the cytoskeleton, as well as its anchorage to specific sites in the plasma membrane and organelles, are regulated by the plakins. These structurally related proteins anchor different cytoskeletal networks to each other and/or to other cellular structures. The association of several plakins with intermediate filaments (IFs) is critical for maintenance of the cytoarchitecture. Pathogenic mutations in the genes encoding different plakins can lead to dramatic manifestations, occurring principally in the skin, striated muscle, and/or nervous system, due to cytoskeletal disorganization resulting in abnormal cell fragility. Nevertheless, it is still unclear how plakins bind to IFs, although some general rules are slowly emerging. We here describe in detail a recently developed protein-protein fluorescence binding assay, based on the production of recombinant proteins tagged with green fluorescent protein (GFP) and their use as fluid-phase fluorescent ligands on immobilized IF proteins. Using this method, we have been able to assess the ability of C-terminal regions of GFP-tagged plakin proteins to bind to distinct IF proteins and IF domains. This simple and sensitive technique, which is expected to facilitate further studies in this area, can also be potentially employed for any kind of protein-protein interaction studies. © 2016 Elsevier Inc. All rights reserved.

  19. Purification, identification and preliminary crystallographic studies of a 2S albumin seed protein from Lens culinaris

    International Nuclear Information System (INIS)

    Gupta, Pankaj; Gaur, Vineet; Salunke, Dinakar M.

    2008-01-01

    A 2S albumin from L. culinaris was purified and crystallized and preliminary crystallographic studies were carried out. Lens culinaris (lentil) is a widely consumed high-protein-content leguminous crop. A 2S albumin protein (26.5 kDa) has been identified using NH 2 -terminal sequencing from a 90% ammonium sulfate saturation fraction of total L. culinaris seed protein extract. The NH 2 -terminal sequence shows very high homology to PA2, an allergy-related protein from Pisum sativum. The 2S albumin protein was purified using a combination of size-exclusion and ion-exchange chromatography. Crystals of the 2S seed albumin obtained using the hanging-drop vapour-diffusion method diffracted to 2.5 Å resolution and were indexed in space group P4 1 (or P4 3 ), with unit-cell parameters a = b = 78.6, c = 135.2 Å

  20. Study Quality Protein and Fat in Some Romanian and Foreign Soybean Varieties

    Directory of Open Access Journals (Sweden)

    Daniela Cenan (Pasc

    2014-11-01

    Full Text Available Worldwide soy is one of the most important sources of vegetable protein and vegetable fats supplying plant. Soybean proteins are important both for human food and animal feed industry concentrated. In the last twenty years soybeans have become an irreplaceable product for the food industry. This paper presents the results of the production capacity, protein and oil content of 25 soybean genotypes studied in 2011-2013 at Agricultural Research Station Turda Development. Were calculated  the amounts of protein and oil produced by each genotype in part each year and averaged over three experimental years. Protein content was between 39 per cent and 43.9 per cent and for fat percentage values ​​were between 18.9 per cent and 21.8 per cent. Romanian genotypes quality results are similar to those obtained for foreign genotypes. These genotypes can be grown in climatic conditions of Transylvania resulting quality for there production.

  1. Fundamental studies for the proton polarization technique in neutron protein crystallography

    International Nuclear Information System (INIS)

    Tanaka, Ichiro; Kusaka, Katsuhiro; Chatake, Toshiyuki; Niimura, Nobuo

    2013-01-01

    Fundamental trials to realise the proton polarization technique for detecting hydrogen with higher sensitivity in neutron protein crystallography are described. The isotope effect in conventional neutron protein crystallography (NPC) can be eliminated by the proton polarization technique (ppt). Furthermore, the ppt can improve detection sensitivity of hydrogen (relative neutron scattering length of hydrogen) by approximately eight times in comparison with conventional NPC. Several technical difficulties, however, should be overcome in order to perform the ppt. In this paper, two fundamental studies to realise ppt are presented: preliminary trials using high-pressure flash freezing has shown the advantage of making bulk water amorphous without destroying the single crystal; and X-ray diffraction and liquid-chromatography/mass-spectrometry analyses of standard proteins after introducing radical molecules into protein crystals have shown that radical molecules could be distributed non-specifically around proteins, which is essential for better proton polarization

  2. Purification, identification and preliminary crystallographic studies of a 2S albumin seed protein from Lens culinaris

    Energy Technology Data Exchange (ETDEWEB)

    Gupta, Pankaj; Gaur, Vineet; Salunke, Dinakar M., E-mail: dinakar@nii.res.in [National Institute of Immunology, New Delhi 110 067 (India)

    2008-08-01

    A 2S albumin from L. culinaris was purified and crystallized and preliminary crystallographic studies were carried out. Lens culinaris (lentil) is a widely consumed high-protein-content leguminous crop. A 2S albumin protein (26.5 kDa) has been identified using NH{sub 2}-terminal sequencing from a 90% ammonium sulfate saturation fraction of total L. culinaris seed protein extract. The NH{sub 2}-terminal sequence shows very high homology to PA2, an allergy-related protein from Pisum sativum. The 2S albumin protein was purified using a combination of size-exclusion and ion-exchange chromatography. Crystals of the 2S seed albumin obtained using the hanging-drop vapour-diffusion method diffracted to 2.5 Å resolution and were indexed in space group P4{sub 1} (or P4{sub 3}), with unit-cell parameters a = b = 78.6, c = 135.2 Å.

  3. A growing toolbox of techniques for studying β-barrel outer membrane protein folding and biogenesis.

    Science.gov (United States)

    Horne, Jim E; Radford, Sheena E

    2016-06-15

    Great strides into understanding protein folding have been made since the seminal work of Anfinsen over 40 years ago, but progress in the study of membrane protein folding has lagged behind that of their water soluble counterparts. Researchers in these fields continue to turn to more advanced techniques such as NMR, mass spectrometry, molecular dynamics (MD) and single molecule methods to interrogate how proteins fold. Our understanding of β-barrel outer membrane protein (OMP) folding has benefited from these advances in the last decade. This class of proteins must traverse the periplasm and then insert into an asymmetric lipid membrane in the absence of a chemical energy source. In this review we discuss old, new and emerging techniques used to examine the process of OMP folding and biogenesis in vitro and describe some of the insights and new questions these techniques have revealed. © 2016 The Author(s).

  4. Real-time study of protein adsorption on thin nanocrystalline diamond

    OpenAIRE

    Grieten, Lars; Janssens, S.D.; Ethirajan, Anitha; Vanden Bon, Natalie; Ameloot, Marcel; Michiels, Luc; Haenen, Ken; Wagner, Patrick

    2011-01-01

    The study of protein adsorption on solid surfaces is interesting for theoretical and practical bio-analytical sensing applications. In this work we combine electrochemical impedance spectroscopy, enzyme linked immunosorbent assay, and fluorescence microscopy with thin boron doped nanocrystalline diamond films to address and study the adsorption behavior of globular proteins (antibodies) on hydrophobic and hydrophilic diamond surfaces. A powerful combination of time resolved impedance spectros...

  5. Optimal Power Flow by Interior Point and Non Interior Point Modern Optimization Algorithms

    Directory of Open Access Journals (Sweden)

    Marcin Połomski

    2013-03-01

    Full Text Available The idea of optimal power flow (OPF is to determine the optimal settings for control variables while respecting various constraints, and in general it is related to power system operational and planning optimization problems. A vast number of optimization methods have been applied to solve the OPF problem, but their performance is highly dependent on the size of a power system being optimized. The development of the OPF recently has tracked significant progress both in numerical optimization techniques and computer techniques application. In recent years, application of interior point methods to solve OPF problem has been paid great attention. This is due to the fact that IP methods are among the fastest algorithms, well suited to solve large-scale nonlinear optimization problems. This paper presents the primal-dual interior point method based optimal power flow algorithm and new variant of the non interior point method algorithm with application to optimal power flow problem. Described algorithms were implemented in custom software. The experiments show the usefulness of computational software and implemented algorithms for solving the optimal power flow problem, including the system model sizes comparable to the size of the National Power System.

  6. The protein-protein interactions between SMPI and thermolysin studied by molecular dynamics and MM/PBSA calculations.

    Science.gov (United States)

    Adekoya, Olayiwola A; Willassen, Nils-Peder; Sylte, Ingebrigt

    2005-04-01

    Thermolysin is a zinc-metalloendopeptidase secreted by the gram-positive thermophilic bacterium Bacillus thermoproteolyticus. Thermolysin belongs to the gluzinicin family of enzymes, which is selectively inhibited by Steptomyces metalloproteinase inhibitor (SMPI). Very little is known about the interaction between SMPI and thermolysin. Knowledge about the protein-protein interactions is very important for designing new thermolysin inhibitors with possible industrial or pharmaceutical applications. In the present study, two binding modes between SMPI and thermolysin were studied by 2300 picoseconds (ps) of comparative molecular dynamics (MD) simulations and calculation of the free energy of binding using the molecular mechanics-Poisson-Boltmann surface area (MM/PBSA) method. One of the positions, the 'horizontal arrow head docking' (HAHD) was similar to the previously proposed binding mode by Tate et al. (Tate, S., Ohno, A., Seeram, S. S., Hiraga, K., Oda, K., and Kainosho, M. J. Mol. Biol. 282, 435-446 (1998)). The other position, the 'vertical arrow head docking' (VAHD) was obtained by a manual docking guided by the shape and charge distribution of SMPI and the binding pocket of thermolysin. The calculations showed that SMPI had stronger interactions with thermolysin in the VAHD than in the HAHD complex, and the VAHD complex was considered more realistic than the HAHD complex. SMPI interacted with thermolysin not only at the active site but had auxiliary binding sites contributing to proper interactions. The VAHD complex can be used for designing small molecule inhibitors mimicking the SMPI-thermolysin binding interfaces.

  7. Disorder Prediction Methods, Their Applicability to Different Protein Targets and Their Usefulness for Guiding Experimental Studies

    Directory of Open Access Journals (Sweden)

    Jennifer D. Atkins

    2015-08-01

    Full Text Available The role and function of a given protein is dependent on its structure. In recent years, however, numerous studies have highlighted the importance of unstructured, or disordered regions in governing a protein’s function. Disordered proteins have been found to play important roles in pivotal cellular functions, such as DNA binding and signalling cascades. Studying proteins with extended disordered regions is often problematic as they can be challenging to express, purify and crystallise. This means that interpretable experimental data on protein disorder is hard to generate. As a result, predictive computational tools have been developed with the aim of predicting the level and location of disorder within a protein. Currently, over 60 prediction servers exist, utilizing different methods for classifying disorder and different training sets. Here we review several good performing, publicly available prediction methods, comparing their application and discussing how disorder prediction servers can be used to aid the experimental solution of protein structure. The use of disorder prediction methods allows us to adopt a more targeted approach to experimental studies by accurately identifying the boundaries of ordered protein domains so that they may be investigated separately, thereby increasing the likelihood of their successful experimental solution.

  8. Impact of protein supplementation after bariatric surgery: A randomized controlled double-blind pilot study.

    Science.gov (United States)

    Schollenberger, Asja E; Karschin, Judith; Meile, Tobias; Küper, Markus A; Königsrainer, Alfred; Bischoff, Stephan C

    2016-02-01

    Bariatric patients are at risk of protein deficiency. The aim of this study was to determine possible benefits of postoperative protein supplementation weight reduction, body composition, and protein status. Twenty obese patients who underwent bariatric surgery were randomized either to the protein (PRO) group, which received a daily protein supplement over 6 months postoperatively, or to the control (CON) group, which received an isocaloric placebo in a double-blind fashion. Data on protein and energy intake, body weight, body composition, blood proteins, and grip force was collected preinterventionally and at 1, 3, and 6 months postoperatively. In both groups body weight was significantly reduced to a similar extent (after 6 months: PRO group 25.4 ± 7.2%, CON group 20.9 ± 3.9%; intergroup comparison P > 0.05). Protein intake was steadily increased in the PRO group, but not in the CON group, and reached maximum at month 6 (25.4 ± 3.7% of energy intake versus 15.8 ± 4.4%; P bariatric surgery improves body composition by enhancing loss of body fat mass and reducing loss of lean body mass within the 6 months follow up. Copyright © 2016 Elsevier Inc. All rights reserved.

  9. Shotgun proteomic analytical approach for studying proteins adsorbed onto liposome surface

    KAUST Repository

    Capriotti, Anna Laura

    2011-07-02

    The knowledge about the interaction between plasma proteins and nanocarriers employed for in vivo delivery is fundamental to understand their biodistribution. Protein adsorption onto nanoparticle surface (protein corona) is strongly affected by vector surface characteristics. In general, the primary interaction is thought to be electrostatic, thus surface charge of carrier is supposed to play a central role in protein adsorption. Because protein corona composition can be critical in modifying the interactive surface that is recognized by cells, characterizing its formation onto lipid particles may serve as a fundamental predictive model for the in vivo efficiency of a lipidic vector. In the present work, protein coronas adsorbed onto three differently charged cationic liposome formulations were compared by a shotgun proteomic approach based on nano-liquid chromatography-high-resolution mass spectrometry. About 130 proteins were identified in each corona, with only small differences between the different cationic liposome formulations. However, this study could be useful for the future controlled design of colloidal drug carriers and possibly in the controlled creation of biocompatible surfaces of other devices that come into contact with proteins into body fluids. © 2011 Springer-Verlag.

  10. Strategic study on energy-protein requirements for local sheep: 5. Ewes during lactation phase

    Directory of Open Access Journals (Sweden)

    I-W Mathius

    2004-03-01

    Full Text Available Thirty-six Javanese thin-tail ewes in the end of late pregnancy phase were set out to study the energy and crude protein requirements during the first eight-week of lactation phase. The ewes were penned individually in doors and randomly assigned to a 3 x 3 factorial arrangement, consisting of three levels of energy (low, medium and high and three levels of crude protein (low, medium and high diets with four ewes per treatment. The diets were pelleted and offered four times daily in approximately equal amount. Feed intake, nutrient digestibility, body weight and milk production were recorded. Results showed that, total lamb birth weights was not affected, but protein content on the ration treatments significantly altered (P0.05, while crude protein content on the ration highly significantly affected (P<0.01. Based on data recorded, the energy and protein requirements for ewes during lactation phase are highly significantly depended on ewes’ live weight, milk production and the ratio of energy metabolism and crude protein of the ration. It was concluded that in order to fulfil the crude protein and energy needs of the ewes during lactation phase, the ration given should contain crude protein and energy as much as 16% (based on dry matter and 13.4 MJ/kg dry matter respectively.

  11. iTRAQ-based quantitative proteomic analysis and bioinformatics study of proteins in pterygia.

    Science.gov (United States)

    Linghu, Dandan; Guo, Lili; Zhao, Yinghua; Liu, Zhiming; Zhao, Mingwei; Huang, Lvzhen; Li, Xiaoxin

    2017-07-01

    To analyze proteins in the tissue of pterygia, and to investigate their potential roles in pterygia, using the comparative proteomic technique of Isobaric Tags for Relative and Absolute Quantitation (iTRAQ) coupled with offline 2DLC-MS/MS, Western-bolt. The tissue of pterygia and healthy conjunctiva was collected from 10 pterygia patients (6 females, 4 males; average age was 52 years old; average course of disease was 6 years) in our hospital from September, 2015 to March, 2016. iTRAQ was used to analyze proteins in the patients' pterygia and healthy conjunctiva. Proteins with a fold change of >2. 0 or proteins were subjected to subsequent gene ontology analysis using the DAVID database. Then we confirmed the targeted proteins with western-blot. 156 proteins that expressed differently between the pterygia and healthy conjunctiva were identified using iTRAQ analysis. Of these proteins, 18 were down-regulated, and 138 were up-regulated. On the basis of biological processes in gene ontology, the identified proteins were mainly involved in cellular process, metabolic process, developmental process, location, cellular component organization, Among these proteins, matrix Metalloproteinase 10 (MMP-10) and CD34 may have potential roles in the pathogenesis of pterygia. Then we confirmed with Western-bolt that MMP-10 and CD34 were up-regulated in pterygia. This study is the first to identify 156 proteins associated with pterygia with iTRAQ technology. Data in our study will aid in providing a better understanding of pterygia. © 2017 The Authors. PROTEOMICS - Clinical Applications published by WILEY-VCH Verlag GmbH & Co. KGaA.

  12. Designscholar: Examining Creative Thinking in an Online Learning Community for Interior Design Graduate Students

    Science.gov (United States)

    Ransdell, Marlo Evelyn

    2009-01-01

    This study examined the creative thinking of interior design graduate students in an online learning community. This study considered potential changes in creative thinking (fluency, flexibility, originality, and elaboration) about design research resulting from peer-led online discussions. It further studied the learner characteristics of…

  13. In silico study of interaction between rice proteins enhanced disease ...

    Indian Academy of Sciences (India)

    2012-06-25

    Jun 25, 2012 ... A direct interaction of EDS1 with PAD4 is necessary for basal resistance and is related to the transcrip- ... that amplifies resistance locally and systemically (Feys et al. 2001; Volt et al. 2009). Proteomic studies in ..... Technology, New Delhi, for providing financial support under the DST-Women Scientist DST ...

  14. Adamantane-based amphiphiles (ADAs) for membrane protein study: importance of a detergent hydrophobic group in membrane protein solubilisation.

    Science.gov (United States)

    Chae, Pil Seok; Bae, Hyoung Eun; Das, Manabendra

    2014-10-21

    We prepared adamantane-containing amphiphiles and evaluated them using a large membrane protein complex in terms of protein solubilisation and stabilization efficacy. These agents were superior to conventional detergents, especially in terms of the membrane protein solubilisation efficiency, implying a new detergent structure-property relationship.

  15. Studying protein binding to conjugated gold nanospheres; application of Mie light scattering to reaction kinetics.

    Science.gov (United States)

    Lunt, E A M; Pitter, M C; Somekh, M G; O'Shea, P

    2008-09-01

    The study of protein interactions is an area of much interest, particularly towards obtaining more detailed information about biological processes. Current methods involve the use of complicated, specialised techniques which are beyond the scope of most laboratories. Here, we show how information about the binding of proteins to conjugated gold nanospheres can be obtained using straightforward experimental techniques. A Perkin Elmer LS 55 luminescence spectrometer was used to observe the changes in light scattering caused by the binding of complementary proteins to conjugated nanoparticles, measured by the intensity change over time. Mie theory simulations have been used to predict the expected observations and to quantify the changes in intensity as a function of surface coverage. Further kinetic studies have been carried out at 530 nm to obtain more detailed information about the processes involved in the binding reaction. Thus, we have demonstrated that the interaction of proteins can be studied using a straightforward method which provides information about surface coverage and reaction kinetics.

  16. Protein oligomers studied by solid-state NMR – the case of the full-length nucleoid-associated protein histone-like nucleoid structuring protein

    NARCIS (Netherlands)

    Renault, M.A.M.; García, J.; Cordeiro, T.N.; Baldus, M.; Pons, M.

    2013-01-01

    Members of the histone-like nucleoid structuring protein (H-NS) family play roles both as architectural proteins and as modulators of gene expression in Gram-negative bacteria. The H-NS protein participates in modulatory processes that respond to environmental changes in osmolarity, pH, or

  17. Acute-phase proteins in pregnant goats: a longitudinal study.

    Science.gov (United States)

    Czopowicz, Michał; Szaluś-Jordanow, Olga; Mickiewicz, Marcin; Witkowski, Lucjan; Markowska-Daniel, Iwona; Stefaniak, Tadeusz; Reczyńska, Daria; Bagnicka, Emilia; Kaba, Jarosław

    2017-11-01

    We documented changes in serum amyloid A (SAA) and haptoglobin (Hp) concentration in goats during pregnancy, as measured by competitive ELISAs. Fifteen does (pregnant group) and 20 castrated males (control group) were enrolled in the study. Blood samples were collected on the same day from all 35 goats, 7 times throughout the study period: at mating, then once every month, during the week preceding kidding, and 1 mo after kidding. Baseline SAA and Hp concentrations at mating were identical in the 2 groups. In the pregnant group, SAA concentration rose significantly in the second month and remained elevated until the end of pregnancy, with the peak concentration at kidding. In the control group, SAA concentration remained unchanged compared to the baseline concentration throughout the study. SAA concentration was significantly higher in the pregnant than control group only at the end of the fourth month of pregnancy and at kidding. Hp concentration did not change during pregnancy or between groups. SAA concentration at kidding was affected only by parity of does - it was highest in does in the third and fourth pregnancy and gradually lower in older does.

  18. Spatial memory extinction: a c-Fos protein mapping study.

    Science.gov (United States)

    Méndez-Couz, M; Conejo, N M; Vallejo, G; Arias, J L

    2014-03-01

    While the neuronal basis of spatial memory consolidation has been thoroughly studied, the substrates mediating the process of extinction remain largely unknown. This study aimed to evaluate the functional contribution of selected brain regions during the extinction of a previously acquired spatial memory task in the Morris water maze. For that purpose, we used adult male Wistar rats trained in a spatial reference memory task. Learning-related changes in c-Fos inmunoreactive cells after training were evaluated in cortical and subcortical regions. Results show that removal of the hidden platform in the water maze induced extinction of the previously reinforced escape behavior after 16 trials, without spontaneous recovery 24h later. Extinction was related with significantly higher numbers of c-Fos positive nuclei in amygdala nuclei and prefrontal cortex. On the other hand, the lateral mammillary bodies showed higher number of c-Fos positive cells than the control group. Therefore, in contrast with the results obtained in studies of classical conditioning, we show the involvement of diencephalic structures mediating this kind of learning. In summary, our findings suggest that medial prefrontal cortex, the amygdala complex and diencephalic structures like the lateral mammillary nuclei are relevant for the extinction of spatial memory. Copyright © 2013 Elsevier B.V. All rights reserved.

  19. Biocompatibility study of protein capped and uncapped silver nanoparticles on human hemoglobin

    International Nuclear Information System (INIS)

    Bhunia, Amit Kumar; Saha, Satyajit; Samanta, Pijus Kanti; Aich, Debasish; Kamilya, Tapanendu

    2015-01-01

    The interactions of human hemoglobin with protein capped silver nanoparticles and bare silver nanoparticles were studied to understand fundamental perspectives about the biocompatibility of protein capped silver nanoparticles compared with bare silver nanoparticles. Bare silver (Ag) nanoparticles (NPs) were prepared by the chemical reduction method. High resolution transmission electron microscopy (HRTEM) analysis along with absorption at ∼390 nm indicated the formation of bare Ag NPs. Protein coated Ag NPs were prepared by a green synthesis method. Absorption at ∼440 nm along with ∼280 nm indicated the formation of protein coated Ag NPs. The biocompatibility of the above mentioned Ag NPs was studied by interaction with human hemoglobin (Hb) protein. In presence of bare Ag NPs, the Soret band of Hb was red shifted. This revealed the distortion of iron from the heme pockets of Hb. Also, the fluorescence peak of Hb was quenched and red shifted which indicated that Hb became unfolded in the presence of bare Ag NPs. No red shift of the absorption of Soret, along with no shift and quenching of the fluorescence peak of Hb were observed in the presence of protein coated Ag NPs. A hemolysis assay suggested that protein coated Ag NPs were more biocompatible than bare one. (paper)

  20. Protecting role of cosolvents in protein denaturation by SDS: a structural study

    Directory of Open Access Journals (Sweden)

    Wouters Johan

    2008-06-01

    Full Text Available Abstract Background Recently, we reported a unique approach to preserve the activity of some proteins in the presence of the denaturing agent, Sodium Dodecyl Sulfate (SDS. This was made possible by addition of the amphipathic solvent 2,4-Methyl-2-PentaneDiol (MPD, used as protecting but also as refolding agent for these proteins. Although the persistence of the protein activity in the SDS/MPD mixture was clearly established, preservation of their structure was only speculative until now. Results In this paper, a detailed X-ray study addresses the pending question. Crystals of hen egg-white lysozyme were grown for the first time in the presence of MPD and denaturing concentrations of SDS. Depending on crystallization conditions, tetragonal crystals in complex with either SDS or MPD were collected. The conformation of both structures was very similar to the native lysozyme and the obtained complexes of SDS-lysozyme and MPD-lysozyme give some insights in the interplay of protein-SDS and protein-MPD interactions. Conclusion This study clearly established the preservation of the enzyme structure in a SDS/MPD mixture. It is hypothesized that high concentrations of MPD would change the properties of SDS and lower or avoid interactions between the denaturant and the protein. These structural data therefore support the hypothesis that MPD avoids disruption of the enzyme structure by SDS and can protect proteins from SDS denaturation.