Sample records for igsmail-5051 cgsic svn

  1. Assisting Instructional Assessment of Undergraduate Collaborative Wiki and SVN Activities (United States)

    Kim, Jihie; Shaw, Erin; Xu, Hao; Adarsh, G. V.


    In this paper we examine the collaborative performance of undergraduate engineering students who used shared project documents (Wikis, Google documents) and a software version control system (SVN) to support project collaboration. We present an initial implementation of TeamAnalytics, an instructional tool that facilitates the analyses of the…

  2. Marketing skills as determinants that underpin the competitiveness of the rice industry in Yaguachi canton. Application of SVN numbers to the prioritization of strategies

    Directory of Open Access Journals (Sweden)

    Pablo José Menéndez Vera


    Full Text Available In Ecuador, specifically in the Yaguachi Canton, there is an enormous potential in the rice production, which unfortunately is not being well used and driven by marketing strategies. In this work, marketing strategies were developed that help to sustain the commercial activity of rice in Yaguachi Canton and its surroundings. The proposed strategies were analyzed and prioritized using SVN and Euclidean distance for the treatment of neutralities. The paper ends with conclusion and future work proposal for the application of neutrosophy to new areas of marketing.

  3. A Knowledge-based Recommendation Framework using SVN Numbers

    Directory of Open Access Journals (Sweden)

    Roddy Cabezas Padilla


    Full Text Available Current knowledge based recommender systems, despite proven useful and having a high impact, persist with some shortcomings. Among its limitations are the lack of more flexible models and the inclusion of indeterminacy of the factors involved for computing a global similarity.

  4. Mechanisms of HIV-1 subtype C resistance to GRFT, CV-N and SVN

    CSIR Research Space (South Africa)

    Alexandre, Kabamba B


    Full Text Available escalating concentrations of these lectins became increasingly resistant tolerating 2 to 12 times their 50% inhibitory concentrations. Sequence analysis of gp120 showed that most had deletions of 1 to 5 mannose-rich glycans. Glycosylation sites at positions...

  5. Project CHECO Southeast Asia Report. FAC Operations in Close Air Support Role in SVN

    National Research Council Canada - National Science Library

    Overton, James B


    This report addresses the role of the Forward Air Controller (FAC) in Southeast Asia. The various categories of FACs are discussed, including the function of the Ground FAC and the duties he performs...

  6. Histamine Excites Rat Superior Vestibular Nuclear Neurons via Postsynaptic H1 and H2 Receptors in vitro

    Directory of Open Access Journals (Sweden)

    Qian-Xing Zhuang


    Full Text Available The superior vestibular nucleus (SVN, which holds a key position in vestibulo-ocular reflexes and nystagmus, receives direct hypothalamic histaminergic innervations. By using rat brainstem slice preparations and extracellular unitary recordings, we investigated the effect of histamine on SVN neurons and the underlying receptor mechanisms. Bath application of histamine evoked an excitatory response of the SVN neurons, which was not blocked by the low-Ca2+/high-Mg2+ medium, indicating a direct postsynaptic effect of the amine. Selective histamine H1 receptor agonist 2-pyridylethylamine and H2 receptor agonist dimaprit, rather than VUF8430, a selective H4 receptor agonist, mimicked the excitation of histamine on SVN neurons. In addition, selective H1 receptor antagonist mepyramine and H2 receptor antagonist ranitidine, but not JNJ7777120, a selective H4 receptor antagonist, partially blocked the excitatory response of SVN neurons to histamine. Moreover, mepyramine together with ranitidine nearly totally blocked the histamine-induced excitation. Immunostainings further showed that histamine H1 and H2 instead of H4 receptors existed in the SVN. These results demonstrate that histamine excites the SVN neurons via postsynaptic histamine H1 and H2 receptors, and suggest that the central histaminergic innervation from the hypothalamus may actively bias the SVN neuronal activity and subsequently modulate the SVN-mediated vestibular functions and gaze control.

  7. [Skull vibratory test in partial vestibular lesions--influence of the stimulus frequency on the nystagmus direction]. (United States)

    Dumas, G; Perrin, P; Morel, N; N'Guyen, D Q; Schmerber, S


    Results of the skull vibratory test (SVT) in partial unilateral vestibular peripheral lesions (PUVL) are different from the results in total vestibular lesions (TUVL). To reveal a correlation between the results of the analysis of the skull vibratory nystagmus (SVN) horizontal component and the side of the lesion; to correlate these results with the stimulus frequency. To find out a predictive correlation between the SVN horizontal and vertical components and the topography of a vestibular lesion. To appreciate the degree of vestibular deafferentation (extended to high frequencies) provoked by gentamicin labyrinthectomy and its efficiency in Meniere's disease. 53 patients with a SVN and a PUVL were included and compared with 10 TUVL and 10 normal subjects. Protocol included a HST (2 Hz), a SVT at 30, 60 and 100 Hz and a caloric test. Recordings were performed with a 2D and 3D VNG device. In PUVL, SVN at 30, 60 and 100 Hz was obtained in 80, 90 and 90% of cases respectively. SVN is correlated with the side of the lesion at 30, 60 and 100 Hz respectively in 65%, 63%, 80% of cases. SVN is not correlated with the side of the lesion in 20% of Meniere's disease, in 8% of vestibular neuritis and in 6% of vestibular schwannoma. In PUVL HSN is correlated with the side of the lesion in 69% of cases. The direction of the HSN and of the SVN was different in 23% when the nystagmus attended at the same time for both tests. In PUVL the direction of the SVN is different at 100 Hz and 30 Hz in 16% of cases when they are concomittant on the same patient. After Gentamicine labyrinthectomy, the coherence of the results in caloric test, HSN and SVN (areflexy and lesional nystagmus beating toward the safe side) was correlated with the efficiency of the therapy. A SVN vertical component was met in 10% of PUVL (essentially in anterior canal dehiscence and few cases of partial labyrinthitis). The horizontal SVN SPV is significantly slower in PUVL than in TUVL patients (p=0.0004). The SVT

  8. The cyanobacterial lectin scytovirin displays potent in vitro and in vivo activity against Zaire Ebola virus. (United States)

    Garrison, Aura R; Giomarelli, Barbara G; Lear-Rooney, Calli M; Saucedo, Carrie J; Yellayi, Srikanth; Krumpe, Lauren R H; Rose, Maura; Paragas, Jason; Bray, Mike; Olinger, Gene G; McMahon, James B; Huggins, John; O'Keefe, Barry R


    The cyanobacterial lectin scytovirin (SVN) binds with high affinity to mannose-rich oligosaccharides on the envelope glycoprotein (GP) of a number of viruses, blocking entry into target cells. In this study, we assessed the ability of SVN to bind to the envelope GP of Zaire Ebola virus (ZEBOV) and inhibit its replication. SVN interacted specifically with the protein's mucin-rich domain. In cell culture, it inhibited ZEBOV replication with a 50% virus-inhibitory concentration (EC50) of 50 nM, and was also active against the Angola strain of the related Marburg virus (MARV), with a similar EC50. Injected subcutaneously in mice, SVN reached a peak plasma level of 100 nm in 45 min, but was cleared within 4h. When ZEBOV-infected mice were given 30 mg/kg/day of SVN by subcutaneous injection every 6h, beginning the day before virus challenge, 9 of 10 animals survived the infection, while all infected, untreated mice died. When treatment was begun one hour or one day after challenge, 70-90% of mice survived. Quantitation of infectious virus and viral RNA in samples of serum, liver and spleen collected on days 2 and 5 postinfection showed a trend toward lower titers in treated than control mice, with a significant decrease in liver titers on day 2. Our findings provide further evidence of the potential of natural lectins as therapeutic agents for viral infections. Published by Elsevier B.V.

  9. The lectins griffithsin, cyanovirin-N and scytovirin inhibit HIV-1 binding to the DC-SIGN receptor and transfer to CD4+ cells

    CSIR Research Space (South Africa)

    Alexandre, Kabamba B


    Full Text Available It is generally believed that during the sexual transmission of HIV-1, the glycan-specific DC-SIGN receptor binds the virus and mediates its transfer to CD4(+) cells. The lectins griffithsin (GRFT), cyanovirin-N (CV-N) and scytovirin (SVN) inhibit...

  10. Nanotechnology Aerospace Applications (Applications aerospatiales de la nanotechnologie) (CD-ROM) (United States)

    ABSTRACT: The Educational Notes contain the abstracts and the lecture material of ten presentations, which provide a general introduction into... commercialisation . The lectures were held in October and November 2006 in four cities, namely Seattle, USA, Montreal, CAN, Ljubljana, SVN, and Bordeaux, FRA. The

  11. Size distribution of salbutamol/ipratropium aerosols produced by different nebulizers in the absence and presence of heat and humidification. (United States)

    Yang, Ssu-Han; Yang, Tsung-Ming; Lin, Hui-Ling; Tsai, Ying-Huang; Fang, Tien-Pei; Wan, Gwo-Hwa


    Few studies have evaluated the size distribution of inhaled and exhaled aerosolized drugs, or the effect of heated humidification on particle size and lung deposition. The present study evaluated these aspects of bronchodilator (salbutamol/ipratropium) delivery using a lung model in the absence and presence of heat and humidification. We positioned filters to collect and measure the initial drug, inhaled drug, and exhaled drug. Particle size distribution was evaluated using an 8-stage Marple personal cascade impactor with 0.2-μm polycarbonate filters. A greater inhaled drug mass was delivered using a vibrating mesh nebulizer (VMN) than by using a small volume nebulizer (SVN), when heated humidifiers were not employed. When heated and humidified medical gas was used, there was no significant difference between the inhaled drug mass delivered by the VMN and that delivered by the SVN. A significantly greater mass of inhaled 1.55-μm drug particles was produced by the VMN than with the SVN, under heated and humidified conditions. However, the mass median aerodynamic diameters (MMADs) of the aerosolized drug produced by the SVN and VMN did not differ significantly under the same conditions. The VMN produced more fine particles of salbutamol/ipratropium, and the drug particle size clearly increased in the presence of heat and humidification. Copyright © 2017 Elsevier Ltd. All rights reserved.

  12. 75 FR 14658 - Invitation for Public Comment on Mitigation Options for Global Positioning System Satellite... (United States)


    ... Public Comment on Mitigation Options for Global Positioning System Satellite Vehicle Number 49 AGENCY... options prior to changing the health status of Global Positioning System (GPS) satellite IIR-20M (satellite vehicle number 49--SVN 49) from unhealthy to healthy. The potential mitigations are each designed...

  13. Marketing skills as determinants that underpin the competitiveness of the rice industry in Yaguachi canton


    Menéndez Delgado, Cristhian Fabián; Menéndez Vera, Pablo José; Peña Gónzalez, Miriam; Vázquez, Maikel Leyva


    In Ecuador, specifically in the Yaguachi Canton, there is an enormous potential in the rice production, which unfortunately is not being well used and driven by marketing strategies. In this work, marketing strategies were developed that help to sustain the commercial activity of rice in Yaguachi Canton and its surroundings. The proposed strategies were analyzed and prioritized using SVN and Euclidean distance for the treatment of neutralities. The paper ends with conclusion and future work p...

  14. Flight Control Requirements for Weapon Delivery. Volume 1. Development of the Terminal Aerial Weapon Delivery Simulation (TAWDS) Programs and Their Use in Formulating Flying Qualities Guidelines for Manually Coupled Aircraft Weapon Delivery Systems (United States)


    t) AT(t) + B(t) Q(t) BT(t) X XX 1 267 ■■ ^"""■’■"-’■ «-I ...,r^.-^^ Mitm *<^ «^r*.»*** ■..fin^....^ ■"■""■"""■"" ■ ■»IM II Uli« svn^im^M

  15. Neutrosophy for software requirement prioritization

    Directory of Open Access Journals (Sweden)

    Ronald Barriga Dias


    Full Text Available Software engineers are involved in complex decisions that require multiples viewpoints. A specific case is the requirement prioritization process. This process is used to decide which software requirement to develop in certain release from a group of candidate requirements. Criteria involved in this process can involve indeterminacy. In this paper a software requirement prioritization model is develop based SVN numbers. Finally, an illustrative example is presented in order to show the proposed model.

  16. Case series

    African Journals Online (AJOL)


    27 sept. 2017 ... Résumé. La synovite villonodulaire pigmentée (SVNP) est une prolifération bénigne rare de la synoviale des articulations, des bourses séreuses et des gaines tendineuses, d'étiopathogénie inconnue. Notre travail porte sur 20 cas de SVN du genou colligés à l'hôpital militaire Avicenne de Marrakech sur ...

  17. The NATO Warsaw Summit: How to Strengthen Alliance Cohesion (Strategic Forum, Number 296) (United States)


    notion of European disintegration—if it were to take hold—cannot have but the most profound im- plications for Alliance management. The rise of political...BEL SVN CAN DEU HRV NOR FRA ESP HUN GBR USA TUR DNK NLD CZE ROU PRT EST GRC LVA SVK LUX POL LTU Figure. NATO Defense Expenditure Data Source: Defence ...Danish Institute for International Studies, August 2015); Rainer L. Glatz and Martin Zapfe, NATO Defence Planning between Wales and Warsaw: Politico

  18. Contents of GPS Data Files

    Energy Technology Data Exchange (ETDEWEB)

    Sullivan, John P. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Carver, Matthew Robert [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Norman, Benjamin [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)


    There are no very detailed descriptions of most of these instruments in the literature – we will attempt to fix that problem in the future. The BDD instruments are described in [1]. One of the dosimeter instruments on CXD boxes is described in [2]. These documents (or web links to them) and a few others are in this directory tree. The cross calibration of the CXD electron data with RBSP is described in [3]. Each row in the data file contains the data from one time bin from a CXD or BDD instrument along with a variety of parameters derived from the data. Time steps are commandable but 4 minutes is a typical setting. These instruments are on many (but not all) GPS satellites which are currently in operation. The data come from either BDD instruments on GPS Block IIR satellites (SVN41 and 48), or else CXD-IIR instruments on GPS Block IIR and IIR-M satellites (SVN53-61) or CXD-IIF instruments on GPS block IIF satellites (SVN62-73). The CXD-IIR instruments on block IIR and IIR(M) satellites use the same design.

  19. Modernising ATLAS Software Build Infrastructure

    CERN Document Server

    Gaycken, Goetz; The ATLAS collaboration


    In the last year ATLAS has radically updated its software development infrastructure hugely reducing the complexity of building releases and greatly improving build speed, flexibility and code testing. The first step in this transition was the adoption of CMake as the software build system over the older CMT. This required the development of an automated translation from the old system to the new, followed by extensive testing and improvements. This resulted in a far more standard build process that was married to the method of building ATLAS software as a series of 12 separate projects from SVN. We then proceeded with a migration of its code base from SVN to git. As the SVN repository had been structured to manage each package more or less independently there was no simple mapping that could be used to manage the migration into git. Instead a specialist set of scripts that captured the software changes across official software releases was developed. With some clean up of the repository and the policy of onl...

  20. El sistema vomeronasal y su posible funcionalidad en larvas de anuros

    Directory of Open Access Journals (Sweden)

    Pozzi, Andrea Gabriela


    Full Text Available El sistema vomeronasal (SVN es un sistema olfatorio accesorio presente en la mayoría de los tetrápodos. Clásicamente se lo ha asociado con el paso de los vertebrados al ambiente terrestre; sin embargo las evidencias surgidas en los últimos años indican que el SVN apareció tempranamente en la evolución de los tetrápodos y sería funcional en ambientes acuáticos. Este sistema sensorial ha sido descripto en etapas larvales de anuros. Pero ¿es funcional el SVN en renacuajos? No existen experimentos en donde se evalúe la participación del SVN en la quimiodetección en renacuajos. Sin embargo, un número considerable de evidencias indican que este sistema sensorial podría ser funcional en larvas de anuros: 1 El órgano vomeronasal (OVN aparece durante el desarrollo embrionario y está presente durante toda la etapa larval. 2 El OVN contiene neuronas bipolares cuyos axones proyectan al bulbo olfatorio accesorio (BOA donde establecen conexiones sinápticas con neuronas telencefálicas. 3 Las neuronas del OVN expresan los receptores de membrana descriptos en tetrápodos, así como la proteína G involucrada en la señalización intracelular. 4 Los análisis de microscopía electrónica demuestran que el OVN posee neuronas con microvellosidades apicales como se describe para otros grupos y sus características ultraestructurales no se modifican durante la metamorfosis. Más aún, no hay diferencias en la ultraestructura de las conexiones sinápticas entre larvas y adultos a nivel del BOA. Los renacuajos presentan una gran cantidad de comportamientos mediados por quimiodetección. Conocer si el SVN participa en la detección de alguno/s de estos estímulos ayudaría no sólo a dilucidar aspectos relacionados con la comunicación química y el comportamiento en renacuajos sino también a comprender aspectos evolutivos de los sistemas quimiosensoriales en vertebrados.



    K. Rejinadevi; Dr. C. Ramesh


    The purpose of the study was to find out the effect of core training on selected haematological variables among basketball players. For the purpose of the study forty men basketball players were selected as subjects from S.V.N College and Arul Anandar College, Madurai, Tamilnadu at random and their age ranged from 18 to 25 years. The selected subjects are divided in to two groups of twenty subjects each. Group I acted as core training group and Group II acted as control group. The experimenta...

  2. Prevalência de insónia de novo em doentes com síndrome de apneia obstrutiva do sono tratados com suporte ventilatório nocturno

    Directory of Open Access Journals (Sweden)

    P. Caetano Mota


    Full Text Available Resumo: Introdução: A insónia de novo (IN associada ao uso do suporte ventilatório nocturno (SVN tem sido uma realidade constatada na prática clínica, contudo é de salientar a escassez de dados referentes à sua prevalência. O nosso objectivo consistiu em determinar a prevalência de IN e seus factores de risco em doentes com síndrome de apneia obstrutiva do sono (SAOS sob SVN. Material e métodos: Estudo descritivo transversal que incluiu 80 doentes com SAOS sob SVN. Efectuada comparação entre dois grupos, com e sem IN, relativamente a características demográficas, relacionadas com a doença, e personalidade. Foram excluídos os doentes sob medicação ansiolítica e/ou antidepressiva, com perda ponderal superior ou igual a 10%, e com sintomas da síndrome das pernas inquietas. Resultados: A mediana de idades dos doentes incluídos foi de 60,0 (intervalo interquartil (IIQ 10,0 anos; 82,5% eram do sexo masculino. Os valores iniciais medianos da escala de sonolência de Epworth (ESE e do índice de apneia-hipopneia (IAH foram de 12,5 (IIQ 9,0 e de 44,1 (IIQ 22,4/h, respectivamente. A maioria dos doentes (91,3% estava sob pressão positiva nas vias aéreas em modo automático (auto-adjusting positive airway pressure (APAP. A insónia prévia ao uso de SVN estava presente em 30% (n = 24 dos doentes. A prevalência de IN foi de 21,4% (12/56 e os subtipos de insónia inicial e/ou intermédia foram os mais frequentes (n = 11. Foi encontrada uma relação negativa estatisticamente significativa entre a IN e a pressão em 90% do tempo de SVN (P90 (p = 0.040. Conclusões: Os doentes com SAOS sob SVN apresentaram uma prevalência elevada de IN. Os doentes com IN apresentaram níveis inferiores de pressão de SVN comparativamente com os outros. Abstract: Introduction: New-onset insomnia (NOI associated with nocturnal ventilatory support (NVS is

  3. Quality assurance for the ALICE Monte Carlo procedure

    CERN Document Server

    Ajaz, M; Hristov, Peter; Revol, Jean Pierre


    We implement the already existing macro,$ALICE_ROOT/STEER /CheckESD.C that is ran after reconstruction to compute the physics efficiency, as a task that will run on proof framework like CAF. The task was implemented in a C++ class called AliAnalysisTaskCheckESD and it inherits from AliAnalysisTaskSE base class. The function of AliAnalysisTaskCheckESD is to compute the ratio of the number of reconstructed particles to the number of particle generated by the Monte Carlo generator.The class AliAnalysisTaskCheckESD was successfully implemented. It was used during the production for first physics and permitted to discover several problems (missing track in the MUON arm reconstruction, low efficiency in the PHOS detector etc.). The code is committed to the SVN repository and will become standard tool for quality assurance.

  4. LHCb Tag Collector

    International Nuclear Information System (INIS)

    Fernández, Paloma Fuente; Clemencic, Marco; Cousin, Nicolas


    The LHCb physics software consists of hundreds of packages, each of which is developed by one or more physicists. When the developers have some code changes that they would like released, they commit them to the version control system, and enter the revision number into a database. These changes have to be integrated into a new release of each of the physics analysis applications. Tests are then performed by a nightly build system, which rebuilds various configurations of the whole software stack and executes a suite of run-time functionality tests. A Tag Collector system has been developed using solid standard technologies to cover both the use cases of developers and integration managers. A simple Web interface, based on an AJAX-like technology, is available. Integration with SVN and Nightly Build System, is possible via a Python API. Data are stored in a relational database with the help of an ORM (Object-Relational Mapping) library.

  5. SED-ED, a workflow editor for computational biology experiments written in SED-ML. (United States)

    Adams, Richard R


    The simulation experiment description markup language (SED-ML) is a new community data standard to encode computational biology experiments in a computer-readable XML format. Its widespread adoption will require the development of software support to work with SED-ML files. Here, we describe a software tool, SED-ED, to view, edit, validate and annotate SED-ML documents while shielding end-users from the underlying XML representation. SED-ED supports modellers who wish to create, understand and further develop a simulation description provided in SED-ML format. SED-ED is available as a standalone Java application, as an Eclipse plug-in and as an SBSI ( plug-in, all under an MIT open-source license. Source code is at The application itself is available from

  6. National Transport Code Collaboration (NTCC) PTRANSP, Final Report to the US Department of Energy for the Period August 1, 2007 Through July 31, 2010

    Energy Technology Data Exchange (ETDEWEB)

    Lao, Lang L. [General Atomics; St John, Holger [General Atomics; Staebler, Gary M. [General Atomics; Snyder, Phil B. [General Atomics


    This report describes the work done under U.S. Department of Energy grant number DE-FG02-07ER54935 for the period ending July 31, 2010. The goal of this project was to provide predictive transport analysis to the PTRANSP code. Our contribution to this effort consisted of three parts: (a) a predictive solver suitable for use with highly non-linear transport models and installation of the turbulent confinement models GLF23 and TGLF, (b) an interface of this solver with the PTRANSP code, and (c) initial development of an EPED1 edge pedestal model interface with PTRANSP. PTRANSP has been installed locally on this cluster by importing a complete PTRANSP build environment that always contains the proper version of the libraries and other object files that PTRANSP requires. The GCNMP package and its interface code have been added to the SVN repository at PPPL.

  7. Network monitoring in the Tier2 site in Prague

    International Nuclear Information System (INIS)

    Eliáš, Marek; Fiala, Lukáš; Horký, Jirí; Chudoba, Jirí; Kouba, Tomáš; Kundrát, Jan; Švec, Jan


    Network monitoring provides different types of view on the network traffic. It's output enables computing centre staff to make qualified decisions about changes in the organization of computing centre network and to spot possible problems. In this paper we present network monitoring framework used at Tier-2 in Prague in Institute of Physics (FZU). The framework consists of standard software and custom tools. We discuss our system for hardware failures detection using syslog logging and Nagios active checks, bandwidth monitoring of physical links and analysis of NetFlow exports from Cisco routers. We present tool for automatic detection of network layout based on SNMP. This tool also records topology changes into SVN repository. Adapted weathermap4rrd is used to visualize recorded data to get fast overview showing current bandwidth usage of links in network.

  8. Raven-II: an open platform for surgical robotics research. (United States)

    Hannaford, Blake; Rosen, Jacob; Friedman, Diana W; King, Hawkeye; Roan, Phillip; Cheng, Lei; Glozman, Daniel; Ma, Ji; Kosari, Sina Nia; White, Lee


    The Raven-II is a platform for collaborative research on advances in surgical robotics. Seven universities have begun research using this platform. The Raven-II system has two 3-DOF spherical positioning mechanisms capable of attaching interchangeable four DOF instruments. The Raven-II software is based on open standards such as Linux and ROS to maximally facilitate software development. The mechanism is robust enough for repeated experiments and animal surgery experiments, but is not engineered to sufficient safety standards for human use. Mechanisms in place for interaction among the user community and dissemination of results include an electronic forum, an online software SVN repository, and meetings and workshops at major robotics conferences.

  9. Effective cancer vaccine platform based on attenuated salmonella and a type III secretion system. (United States)

    Xu, Xin; Hegazy, Wael A H; Guo, Linjie; Gao, Xiuhua; Courtney, Amy N; Kurbanov, Suhrab; Liu, Daofeng; Tian, Gengwen; Manuel, Edwin R; Diamond, Don J; Hensel, Michael; Metelitsa, Leonid S


    Vaccines explored for cancer therapy have been based generally on injectable vector systems used to control foreign infectious pathogens, to which the immune system evolved to respond naturally. However, these vectors may not be effective at presenting tumor-associated antigens (TAA) to the immune system in a manner that is sufficient to engender antitumor responses. We addressed this issue with a novel orally administered Salmonella-based vector that exploits a type III secretion system to deliver selected TAA in the cytosol of professional antigen-presenting cells in situ. A systematic comparison of candidate genes from the Salmonella Pathogenicity Island 2 (SPI2) locus was conducted in the vaccine design, using model antigens and a codon-optimized form of the human TAA survivin (coSVN), an oncoprotein that is overexpressed in most human cancers. In a screen of 20 SPI2 promoter:effector combinations, a PsifB::sseJ combination exhibited maximal potency for antigen translocation into the APC cytosol, presentation to CD8 T cells, and murine immunogenicity. In the CT26 mouse model of colon carcinoma, therapeutic vaccination with a lead PsifB::sseJ-coSVN construct (p8032) produced CXCR3-dependent infiltration of tumors by CD8 T cells, reversed the CD8:Treg ratio at the tumor site, and triggered potent antitumor activity. Vaccine immunogenicity and antitumor potency were enhanced by coadministration of the natural killer T-cell ligand 7DW8-5, which heightened the production of IL12 and IFNγ. Furthermore, combined treatment with p8032 and 7DW8-5 resulted in complete tumor regression in A20 lymphoma-bearing mice, where protective memory was demonstrated. Taken together, our results demonstrate how antigen delivery using an oral Salmonella vector can provide an effective platform for the development of cancer vaccines. ©2014 American Association for Cancer Research.

  10. pyam: Python Implementation of YaM (United States)

    Myint, Steven; Jain, Abhinandan


    pyam is a software development framework with tools for facilitating the rapid development of software in a concurrent software development environment. pyam provides solutions for development challenges associated with software reuse, managing multiple software configurations, developing software product lines, and multiple platform development and build management. pyam uses release-early, release-often development cycles to allow developers to integrate their changes incrementally into the system on a continual basis. It facilitates the creation and merging of branches to support the isolated development of immature software to avoid impacting the stability of the development effort. It uses modules and packages to organize and share software across multiple software products, and uses the concepts of link and work modules to reduce sandbox setup times even when the code-base is large. One sidebenefit is the enforcement of a strong module-level encapsulation of a module s functionality and interface. This increases design transparency, system stability, and software reuse. pyam is written in Python and is organized as a set of utilities on top of the open source SVN software version control package. All development software is organized into a collection of modules. pyam packages are defined as sub-collections of the available modules. Developers can set up private sandboxes for module/package development. All module/package development takes place on private SVN branches. High-level pyam commands support the setup, update, and release of modules and packages. Released and pre-built versions of modules are available to developers. Developers can tailor the source/link module mix for their sandboxes so that new sandboxes (even large ones) can be built up easily and quickly by pointing to pre-existing module releases. All inter-module interfaces are publicly exported via links. A minimal, but uniform, convention is used for building modules.

  11. Regression testing in the TOTEM DCS

    International Nuclear Information System (INIS)

    Rodríguez, F Lucas; Atanassov, I; Burkimsher, P; Frost, O; Taskinen, J; Tulimaki, V


    The Detector Control System of the TOTEM experiment at the LHC is built with the industrial product WinCC OA (PVSS). The TOTEM system is generated automatically through scripts using as input the detector Product Breakdown Structure (PBS) structure and its pinout connectivity, archiving and alarm metainformation, and some other heuristics based on the naming conventions. When those initial parameters and automation code are modified to include new features, the resulting PVSS system can also introduce side-effects. On a daily basis, a custom developed regression testing tool takes the most recent code from a Subversion (SVN) repository and builds a new control system from scratch. This system is exported in plain text format using the PVSS export tool, and compared with a system previously validated by a human. A report is sent to the developers with any differences highlighted, in readiness for validation and acceptance as a new stable version. This regression approach is not dependent on any development framework or methodology. This process has been satisfactory during several months, proving to be a very valuable tool before deploying new versions in the production systems.

  12. Integrating configuration workflows with project management system

    International Nuclear Information System (INIS)

    Nilsen, Dimitri; Weber, Pavel


    The complexity of the heterogeneous computing resources, services and recurring infrastructure changes at the GridKa WLCG Tier-1 computing center require a structured approach to configuration management and optimization of interplay between functional components of the whole system. A set of tools deployed at GridKa, including Puppet, Redmine, Foreman, SVN and Icinga, provides the administrative environment giving the possibility to define and develop configuration workflows, reduce the administrative effort and improve sustainable operation of the whole computing center. In this presentation we discuss the developed configuration scenarios implemented at GridKa, which we use for host installation, service deployment, change management procedures, service retirement etc. The integration of Puppet with a project management tool like Redmine provides us with the opportunity to track problem issues, organize tasks and automate these workflows. The interaction between Puppet and Redmine results in automatic updates of the issues related to the executed workflow performed by different system components. The extensive configuration workflows require collaboration and interaction between different departments like network, security, production etc. at GridKa. Redmine plugins developed at GridKa and integrated in its administrative environment provide an effective way of collaboration within the GridKa team. We present the structural overview of the software components, their connections, communication protocols and show a few working examples of the workflows and their automation.


    CERN Document Server

    D. Barney


      There are no major concerns for the ECAL running and operation in 2012. The necessary ameliorations to the system were planned in December, and reviewed in a dedicated workshop at the end of January. Many interventions have taken place, mainly on the Trigger and DAQ side in order to bring all software into line with central developments (e.g. SLC5, XDAQ11 and use of SVN). In addition, steps are being taken to improve the recovery time of the system from “single event upsets (SEU)”, which are suspected to be the cause of some downtimes in 2011 (and, if so, would be more frequent in 2012 due to higher luminosities). A new blue laser, for crystal transparency monitoring, is currently being commissioned in Caltech and will be installed at P5 in March. We have optimised the ECAL zero-suppression settings applied online in preparation for the LHC running with high pile-up conditions. The algorithm to reduce the rate of anomalous signals  (“spikes”) fir...

  14. Application Examples for Handle System Usage (United States)

    Toussaint, F.; Weigel, T.; Thiemann, H.; Höck, H.; Stockhause, M.; Lautenschlager, M.


    Besides the well-known DOI (Digital Object Identifiers) as a special form of Handles that resolve to scientific publications there are various other applications in use. Others perhaps are just not yet. We present some examples for the existing ones and some ideas for the future. The national German project C3-Grid provides a framework to implement a first solution for provenance tracing and explore unforeseen implications. Though project-specific, the high-level architecture is generic and represents well a common notion of data derivation. Users select one or many input datasets and a workflow software module (an agent in this context) to execute on the data. The output data is deposited in a repository to be delivered to the user. All data is accompanied by an XML metadata document. All input and output data, metadata and the workflow module receive Handles and are linked together to establish a directed acyclic graph of derived data objects and involved agents. Data that has been modified by a workflow module is linked to its predecessor data and the workflow module involved. Version control systems such as svn or git provide Internet access to software repositories using URLs. To refer to a specific state of the source code of for instance a C3 workflow module, it is sufficient to reference the URL to the svn revision or git hash. In consequence, individual revisions and the repository as a whole receive PIDs. Moreover, the revision specific PIDs are linked to their respective predecessors and become part of the provenance graph. Another example for usage of PIDs in a current major project is given in EUDAT (European Data Infrastructure) which will link scientific data of several research communities together. In many fields it is necessary to provide data objects at multiple locations for a variety of applications. To ensure consistency, not only the master of a data object but also its copies shall be provided with a PID. To verify transaction safety and to

  15. Les synovites villonodulaires du genou: à propos de 20 cas (United States)

    Margad, Omar; Boukhris, Jalal; Azriouil, Ouahb; Daoudi, Mohamed; Mortaji, Aziz; Koulali, Khalid


    La synovite villonodulaire pigmentée (SVNP) est une prolifération bénigne rare de la synoviale des articulations, des bourses séreuses et des gaines tendineuses, d'étiopathogénie inconnue. Notre travail porte sur 20 cas de SVN du genou colligés à l'hôpital militaire Avicenne de Marrakech sur une période de 9 ans allant de janvier 2000 au décembre 2009 Il vise à identifier les spécificités de cette lésion, et à étudier ses principaux aspects anatomocliniques et pronostiques. L'incidence annuelle était de 2,2 cas par an. Ils étaient 15 hommes et 5 femmes, d'âge moyen de 32,5 ans, atteints du coté droit dans 55%des cas sous un mode mono articulaire chez 18 patients et bi articulaire chez un seul. La douleur et la tuméfaction étaient présentes dans 80% des cas, une masse palpable dans un cas, un syndrome méniscal a été retenu dans un cas, une mono arthrite septique dans 3 circonstances de même qu'un kyste poplité dans 2 autres. L'atteinte était diffuse dans 14 cas (70%), localisée dans 6 cas. L'imagerie par résonnance magnétique(IRM) pratiquée chez 5 patients était évocatrice chez 3, l'arthroscopie diagnostique a été utilisée chez 2 malades. La confirmation s'est faite à chaque fois à l'examen anatomopathlogique. Le traitement a consisté en une synovectomie subtotale dans 15 cas et en l'exérèse de la tumeur dans les autres formes localisées, 2 cas présentant une destruction ostéocartilagineuse ont nécessité une arthroplastie. L'évolution a été marquée par la survenue de 2 récidives sous la forme diffuse avec un recul de 3, 7 ans. On a noté une raideur avec atrophie quadricipitale chez 3 patients et une arthrolyse a été réalisée. Un cas de SVN confirmé par l'histologie s'est révélé être 5 mois après la synovectomie totale un Synovialosarcome monophasique envahissant l'os d'où l'indication de l'amputation. PMID:29255556

  16. SU-E-P-26: Oncospace: A Shared Radiation Oncology Database System Designed for Personalized Medicine, Decision Support, and Research

    International Nuclear Information System (INIS)

    Bowers, M; Robertson, S; Moore, J; Wong, J; DeWeese, T; McNutt, T; Phillips, M; Hendrickson, K; Song, W; Kwok, P


    Purpose: Advancement in Radiation Oncology (RO) practice develops through evidence based medicine and clinical trial. Knowledge usable for treatment planning, decision support and research is contained in our clinical data, stored in an Oncospace database. This data store and the tools for populating and analyzing it are compatible with standard RO practice and are shared with collaborating institutions. The question is - what protocol for system development and data sharing within an Oncospace Consortium? We focus our example on the technology and data meaning necessary to share across the Consortium. Methods: Oncospace consists of a database schema, planning and outcome data import and web based analysis tools.1) Database: The Consortium implements a federated data store; each member collects and maintains its own data within an Oncospace schema. For privacy, PHI is contained within a single table, accessible to the database owner.2) Import: Spatial dose data from treatment plans (Pinnacle or DICOM) is imported via Oncolink. Treatment outcomes are imported from an OIS (MOSAIQ).3) Analysis: JHU has built a number of webpages to answer analysis questions. Oncospace data can also be analyzed via MATLAB or SAS queries.These materials are available to Consortium members, who contribute enhancements and improvements. Results: 1) The Oncospace Consortium now consists of RO centers at JHU, UVA, UW and the University of Toronto. These members have successfully installed and populated Oncospace databases with over 1000 patients collectively.2) Members contributing code and getting updates via SVN repository. Errors are reported and tracked via Redmine. Teleconferences include strategizing design and code reviews.3) Successfully remotely queried federated databases to combine multiple institutions’ DVH data for dose-toxicity analysis (see below – data combined from JHU and UW Oncospace). Conclusion: RO data sharing can and has been effected according to the Oncospace

  17. SU-E-P-26: Oncospace: A Shared Radiation Oncology Database System Designed for Personalized Medicine, Decision Support, and Research

    Energy Technology Data Exchange (ETDEWEB)

    Bowers, M; Robertson, S; Moore, J; Wong, J; DeWeese, T; McNutt, T [Johns Hopkins University, Baltimore, MD (United States); Phillips, M [Univ Washington, Seattle, WA (United States); Hendrickson, K [University of Washington, Seattle, WA (United States); Song, W; Kwok, P [Sunnybrook Research Institute, Sunnybrook Health Sciences Centre, U of T, Toronto, Ontario (Canada)


    Purpose: Advancement in Radiation Oncology (RO) practice develops through evidence based medicine and clinical trial. Knowledge usable for treatment planning, decision support and research is contained in our clinical data, stored in an Oncospace database. This data store and the tools for populating and analyzing it are compatible with standard RO practice and are shared with collaborating institutions. The question is - what protocol for system development and data sharing within an Oncospace Consortium? We focus our example on the technology and data meaning necessary to share across the Consortium. Methods: Oncospace consists of a database schema, planning and outcome data import and web based analysis tools.1) Database: The Consortium implements a federated data store; each member collects and maintains its own data within an Oncospace schema. For privacy, PHI is contained within a single table, accessible to the database owner.2) Import: Spatial dose data from treatment plans (Pinnacle or DICOM) is imported via Oncolink. Treatment outcomes are imported from an OIS (MOSAIQ).3) Analysis: JHU has built a number of webpages to answer analysis questions. Oncospace data can also be analyzed via MATLAB or SAS queries.These materials are available to Consortium members, who contribute enhancements and improvements. Results: 1) The Oncospace Consortium now consists of RO centers at JHU, UVA, UW and the University of Toronto. These members have successfully installed and populated Oncospace databases with over 1000 patients collectively.2) Members contributing code and getting updates via SVN repository. Errors are reported and tracked via Redmine. Teleconferences include strategizing design and code reviews.3) Successfully remotely queried federated databases to combine multiple institutions’ DVH data for dose-toxicity analysis (see below – data combined from JHU and UW Oncospace). Conclusion: RO data sharing can and has been effected according to the Oncospace

  18. DTW4Omics: comparing patterns in biological time series.

    Directory of Open Access Journals (Sweden)

    Rachel Cavill

    Full Text Available When studying time courses of biological measurements and comparing these to other measurements eg. gene expression and phenotypic endpoints, the analysis is complicated by the fact that although the associated elements may show the same patterns of behaviour, the changes do not occur simultaneously. In these cases standard correlation-based measures of similarity will fail to find significant associations. Dynamic time warping (DTW is a technique which can be used in these situations to find the optimal match between two time courses, which may then be assessed for its significance. We implement DTW4Omics, a tool for performing DTW in R. This tool extends existing R scripts for DTW making them applicable for "omics" datasets where thousands entities may need to be compared with a range of markers and endpoints. It includes facilities to estimate the significance of the matches between the supplied data, and provides a set of plots to enable the user to easily visualise the output. We illustrate the utility of this approach using a dataset linking the exposure of the colon carcinoma Caco-2 cell line to oxidative stress by hydrogen peroxide (H2O2 and menadione across 9 timepoints and show that on average 85% of the genes found are not obtained from a standard correlation analysis between the genes and the measured phenotypic endpoints. We then show that when we analyse the genes identified by DTW4Omics as significantly associated with a marker for oxidative DNA damage (8-oxodG, through over-representation, an Oxidative Stress pathway is identified as the most over-represented pathway demonstrating that the genes found by DTW4Omics are biologically relevant. In contrast, when the positively correlated genes were similarly analysed, no pathways were found. The tool is implemented as an R Package and is available, along with a user guide from

  19. Ventral Tegmental Area Dopamine Cell Activation during Male Rat Sexual Behavior Regulates Neuroplasticity and d-Amphetamine Cross-Sensitization following Sex Abstinence. (United States)

    Beloate, Lauren N; Omrani, Azar; Adan, Roger A; Webb, Ian C; Coolen, Lique M


    Experience with sexual behavior causes cross-sensitization of amphetamine reward, an effect dependent on a period of sexual reward abstinence. We previously showed that ΔFosB in the nucleus accumbens (NAc) is a key mediator of this cross-sensitization, potentially via dopamine receptor activation. However, the role of mesolimbic dopamine for sexual behavior or cross-sensitization between natural and drug reward is unknown. This was tested using inhibitory designer receptors exclusively activated by designer drugs in ventral tegmental area (VTA) dopamine cells. rAAV5/hSvn-DIO-hm4D-mCherry was injected into the VTA of TH::Cre adult male rats. Males received clozapine N-oxide (CNO) or vehicle injections before each of 5 consecutive days of mating or handling. Following an abstinence period of 7 d, males were tested for amphetamine conditioned place preference (CPP). Next, males were injected with CNO or vehicle before mating or handling for analysis of mating-induced cFos, sex experience-induced ΔFosB, and reduction of VTA dopamine soma size. Results showed that CNO did not affect mating behavior. Instead, CNO prevented sexual experience-induced cross-sensitization of amphetamine CPP, ΔFosB in the NAc and medial prefrontal cortex, and decreases in VTA dopamine soma size. Expression of hm4D-mCherry was specific to VTA dopamine cells and CNO blocked excitation and mating-induced cFos expression in VTA dopamine cells. These findings provide direct evidence that VTA dopamine activation is not required for initiation or performance of sexual behavior. Instead, VTA dopamine directly contributes to increased vulnerability for drug use following loss of natural reward by causing neuroplasticity in the mesolimbic pathway during the natural reward experience. Drugs of abuse act on the neural pathways that mediate natural reward learning and memory. Exposure to natural reward behaviors can alter subsequent drug-related reward. Specifically, experience with sexual behavior

  20. Easy research data handling with an OpenEarth DataLab for geo-monitoring research (United States)

    Vanderfeesten, Maurice; van der Kuil, Annemiek; Prinčič, Alenka; den Heijer, Kees; Rombouts, Jeroen


    OpenEarth DataLab is an open source-based collaboration and processing platform to enable streamlined research data management from raw data ingest and transformation to interoperable distribution. It enables geo-scientists to easily synchronise, share, compute and visualise the dynamic and most up-to-date research data, scripts and models in multi-stakeholder geo-monitoring programs. This DataLab is developed by the Research Data Services team of TU Delft Library and 3TU.Datacentrum together with coastal engineers of Delft University of Technology and Deltares. Based on the OpenEarth software stack an environment has been developed to orchestrate numerous geo-related open source software components that can empower researchers and increase the overall research quality by managing research data; enabling automatic and interoperable data workflows between all the components with track & trace, hit & run data transformation processing in cloud infrastructure using MatLab and Python, synchronisation of data and scripts (SVN), and much more. Transformed interoperable data products (KML, NetCDF, PostGIS) can be used by ready-made OpenEarth tools for further analyses and visualisation, and can be distributed via interoperable channels such as THREDDS (OpenDAP) and GeoServer. An example of a successful application of OpenEarth DataLab is the Sand Motor, an innovative method for coastal protection in the Netherlands. The Sand Motor is a huge volume of sand that has been applied along the coast to be spread naturally by wind, waves and currents. Different research disciplines are involved concerned with: weather, waves and currents, sand distribution, water table and water quality, flora and fauna, recreation and management. Researchers share and transform their data in the OpenEarth DataLab, that makes it possible to combine their data and to see influence of different aspects of the coastal protection on their models. During the project the data are available only for the

  1. Ontology development for provenance tracing in National Climate Assessment of the US Global Change Research Program (United States)

    Ma, X.; Zheng, J. G.; Goldstein, J.; Duggan, B.; Xu, J.; Du, C.; Akkiraju, A.; Aulenbach, S.; Tilmes, C.; Fox, P. A.


    :// [2] Fox, P., McGuinness, D.L., 2008. TWC Semantic Web Methodology. Accessible at: [3] [4]

  2. Evaluating the Emotion Ontology through use in the self-reporting of emotional responses at an academic conference. (United States)

    Hastings, Janna; Brass, Andy; Caine, Colin; Jay, Caroline; Stevens, Robert


    positive valence, and the free-form feedback supplied new terms for the EM. EmOntoTag can be seen at; source code can be downloaded from the ontology is available at

  3. Lattice QCD Thermodynamics First 5000 Trajectories

    International Nuclear Information System (INIS)

    Soltz, R; Gupta, R


    These results represent the first LQCD analysis for approximately 5000 trajectories with each of the p4rhmc and milc codes, with some of the lower temperature runs having fewer. Both runs were for lattice dimensions of 32 3 x8. Some 32 4 T=0 jobs were also run for p4rhmc. The p4 calculation was performed with v2.0 QMP( ) MPI.X (semi-optimized p4 code using qmp over mpi) and milc version of the su3 rhmc susc eos executable dated Mar 1, 2007 on ubgl in the /usr/gapps/hip/qcd/milc/bin subdirectory (svn revision 28). As with previous runs, calculations were performed along lines of constant physics, with the light quark masses 2-3 times their physics values and the strange quark mass set by m ud = 0.1m s . Job submissions were performed using a new job submission script that locates current jobs and submits additional jobs with the same beta value as pending. Note that after reaching a limit of about 35 jobs subsequent submissions are delayed and will not be submitted directly from that state. The job submission script was used to submit revised versions of the milc and p4rhmc csh scripts. Initial thermalized lattices for each code were also for milc (taken from the firstPhys runs), but the p4rhmc runs include thermalization. The only modifications for running on BG/L were to the directory names and the mT parameter which determines job durations (24 hrs on BG/L vs. 4 hrs on ubgl). All finite temperature jobs were submitted to the 512 node partitions, and all T=0 runs were submitted to 2048 node partitions. The set of runs was plagued by filesystem errors on lscratch1 and lscratcH 2 . Many jobs had to be reset (deleting the most recent output file for milc and/or lattice for p4) and resubmitted. The analysis was performed with a new set of scripts that produced a more condensed output for scanning. All scans were verified with checksums, which have been retained in the output along with the line numbers. All lattices, log files, and job submission scripts

  4. Study on a Dynamic Vegetation Model for Simulating Land Surface Flux Exchanges at Lien-Hua-Chih Flux Observation Site in Taiwan (United States)

    Yeh, T. Y.; Li, M. H.; Chen, Y. Y.; Ryder, J.; McGrath, M.; Otto, J.; Naudts, K.; Luyssaert, S.; MacBean, N.; Bastrikov, V.


    Dynamic vegetation model ORCHIDEE (Organizing Carbon and Hydrology In Dynamic EcosystEms) is a state of art land surface component of the IPSL (Institute Pierre Simon Laplace) Earth System Model. It has been used world-wide to investigate variations of water, carbon, and energy exchanges between the land surface and the atmosphere. In this study we assessed the applicability of using ORCHIDEE-CAN, a new feature with 3-D CANopy structure (Naudts et al., 2015; Ryder et al., 2016), to simulate surface fluxes measured at tower-based eddy covariance fluxes at the Lien-Hua-Chih experimental watershed in Taiwan. The atmospheric forcing including radiation, air temperature, wind speed, and the dynamics of vertical canopy structure for driving the model were obtained from the observations site. Suitable combinations of default plant function types were examined to meet in-situ observations of soil moisture and leaf area index from 2009 to 2013. The simulated top layer soil moisture was ranging from 0.1 to 0.4 and total leaf area was ranging from 2.2 to 4.4, respectively. A sensitivity analysis was performed to investigate the sensitive of model parameters and model skills of ORCHIDEE-CAN on capturing seasonal variations of surface fluxes. The most sensitive parameters were suggested and calibrated by an automatic data assimilation tool ORCHDAS (ORCHIDEE Data Assimilation Systems; Latent heat, sensible heat, and carbon fluxes simulated by the model were compared with long-term observations at the site. ORCHIDEE-CAN by making use of calibrated surface parameters was used to study variations of land-atmosphere interactions on a variety of temporal scale in associations with changes in both land and atmospheric conditions. Ref: Naudts, K., et al.,: A vertically discretised canopy description for ORCHIDEE (SVN r2290) and the modifications to the energy, water and carbon fluxes, Geoscientific Model Development, 8, 2035-2065, doi:10.5194/gmd-8

  5. OpenTox predictive toxicology framework: toxicological ontology and semantic media wiki-based OpenToxipedia. (United States)

    Tcheremenskaia, Olga; Benigni, Romualdo; Nikolova, Ivelina; Jeliazkova, Nina; Escher, Sylvia E; Batke, Monika; Baier, Thomas; Poroikov, Vladimir; Lagunin, Alexey; Rautenberg, Micha; Hardy, Barry


    Tox ontology development page; the OpenTox ontology is available as OWL at 1/opentox.owl, the ToxML - OWL conversion utility is an open source resource available at

  6. Penggunaan Vis-NIR untuk Deteksi Serangan Huanglongbing pada Daun Jeruk

    Directory of Open Access Journals (Sweden)

    Raden Arief Firmansyah


    . Namun, identifikasi menggunakan tes DNA memerlukan persiapan sampel, memakan waktu dan mahal. Tujuan dari penelitian ini adalah membangun perangkat lunak deteksi daun sehat dan terinfeksi HLB. Sampel daun dikumpulkan dari kebun jeruk di Desa Situ Gede, Bogor. Sampel daun dibagi menjadi tiga kelompok, daun yang terinfeksi HLB, daun sehat dan daun belum bergejala. Semua sampel telah diuji dengan PCR untuk verifikasi gejala visual Huanglongbing. Spektrometer Vis-NIR dengan rentang spektrum dari 339-1022nm digunakan untuk mengumpulkan data spektrum daun terinfeksi HLB dan sehat. MSC, SVN, baseline correction, turunan pertama dan kedua dari spektra digunakan sebagai metode praperlakuan. Jaringan syaraf tiruan digunakan untuk membangun model klasifikasi Plot X-loading dari analisis komponen utama digunakan untuk mendapatkan panjang gelombang sensitif. Klasifikasi terhadap kategori daun sehat dan sakit menggunakan panjang gelombang sensitif berbasis baseline correction memiliki nilai akurasi 100 % dan kinerja terbaik. Model klasifikasi yang ditanam pada perangkat lunak berbasis komputer desktop menggunakan bahasa pemrograman visual basic. Data spektrum daun belum bergejala dari pohon positif terinfeksi HLB digunakan untuk menguji model klasifikasi. Model mengklasifikasikan data tersebut ke kelompok terinfeksi HLB, yang konsinten dengan hasil pengujian PCR yang juga mengelompokkan pada daun terinfeksi HLB. Hasil penelitian ini menunjukkan bahwa perangkat lunak dapat digunakan untuk deteksi HLB pada tahap awal perkembangan penyakit.

  7. Data publishing - visions of the future (United States)

    Schäfer, Leonie; Klump, Jens; Bertelmann, Roland; Klar, Jochen; Enke, Harry; Rathmann, Torsten; Koudela, Daniela; Köhler, Klaus; Müller-Pfefferkorn, Ralph; van Uytvanck, Dieter; Strathmann, Stefan; Engelhardt, Claudia


    data collected by experiments, monitoring or simulation. In order to verify the results presented, a paper should also report on the process of data analysis applied to the data sets stored at data centers. In this case data, software, and interpretation supplement each other as a trustworthy, reproducible presentation of research results. Another approach is suggested by researchers of the EU-funded project "Liquid Publications" (1). Instead of traditional publications the researchers propose liquid journals as evolving collections of links and material, and recommend new methods in reviewing and assessing publications. Another point of interest are workflows in data publication. The commonly used model to depict the data life cycle might look appealing but does not necessarily represent reality. The model proposed by Treloar et. al. (2) offers a better approach to depict transition of research data between different domains of use, e.g. from the group domain to the public domain. However, several questions need to be addressed, such as how to avoid the loss of contextual information during transitions between domains, and the influence of the size of the data on the workflow process. This poster aims to present different scenarios of the future - from the point of view of researchers, libraries and scientific journals and will invite for further discussion. (1) LiquidPub Green Paper, (2) Treloar, A., Harboe-Ree, C. (2008). Data management and the curation continuum: how the Monash experience is informing repository relationships. In VALA2008, Melbourne, Australia. Retrieved from

  8. JMARS - A Planetary GIS (United States)

    Christensen, P. R.; Engle, E.; Anwar, S.; Dickenshied, S.; Noss, D.; Gorelick, N.; Weiss-Malik, M.


    to effectively allocate instrument resources by using any available product, including their own. Mission participants submit regions of interest for acquisition, and review the resulting images. Command line tools provide a scriptable environment for querying the position and geometry of spacecraft and targets. JMARS is free and open source. Students and researchers are encouraged to submit their data for inclusion in the data archive, where it may be accessed by other tools that support the necessary web standards. Software developers with a little Java experience are invited to write their own layers, or to learn and borrow from our open source SVN repository. JMARS provides free and efficient access to more than a terabyte of NASA orbiter data, and the basic image and vector processing features to conveniently compare, plot, and blend data. It is used by all levels of user, and is actively supported on Windows, Mac, Linux, and Solaris.

  9. The Effects of L2C Signal Tracking on High-Precision Carrier Phase GPS Positioning (United States)

    Berglund, H.; Blume, F.; Estey, L. H.; Borsa, A. A.


    In 2005, the L2C signal was introduced to improve the accuracy, tracking and redundancy of the GPS system for civilian users. The L2C signal also provides improved SNR data when compared with the L2P(Y) legacy signal, comparable to that of the L1 C/A-code, which allows for better tracking at lower elevations. With the recent launch of the first block II-F satellite (SVN62/PRN25), there are 8 healthy satellites broadcasting L2C signals, or 25% of the constellation. However, GNSS network operators such as the UNAVCO Plate Boundary Observatory (PBO) have been hesitant to use the new signal as it is not well determined how tracking and logging L2C could affect the positions derived from L2 carrier phase measurements for a given receiver. The L2C carrier phase is in quadrature (90° out of phase) with the L2P(Y) phase that has been used by high-precision positioning software since the beginning of GPS. To complicate matters further, some receiver manufacturers (e.g. Trimble) correct for this when logging L2C phase while others (e.g. Topcon) do not. The L2C capability of receivers currently in widespread use in permanent networks can depend on firmware as well as hardware; in some cases receivers can simultaneously track L2C and L2P(Y) phases and some can track only one or the other, and the resulting observation files can depend on how individual operators configure the devices. In cases where both L2C and L2P(Y) are logged simultaneously, translation software (such as UNAVCO’s teqc) must be used carefully in order to select which L2 observation is written to RINEX (2.11) and used in positioning. Modifications were recently made to teqc to eliminate potential confusion in that part of the process; if L2C code observations appear in a RINEX (2.11) file produced by teqc, the L2 phase and S2 SNR observations were from the L2C carrier for those satellites. To date L2C analyses have been restricted to special applications such as snow depth and soil moisture using SNR data

  10. Enabling the development of Community Extensions to GI-cat - the SIB-ESS-C case study (United States)

    Bigagli, L.; Meier, N.; Boldrini, E.; Gerlach, R.


    class: the mechanism used to create GI-cat components) to support a custom community catalog/inventory service in GI-cat. In general, all the terminal nodes of a GI-cat configuration chain are in charge of mediating between the GI-cat common interfaces and a backend, so we implemented a default behavior in an abstract class, termed Accessor, to be more easily subclassed. Moreover, we identified several typical backend scenarios and provided specialized Accessor subclasses, even simpler to implement. For example, in case of a coarse-grained backend service, that responds its data all at once, a specialized Accessor can retrieve the whole content the first time, and subsequently browse/query the local copy of the data. This was the approach followed for the development of SibesscAccessor. The SIB-ESS-C case study is also noticeable because it requires mediating between the relational and the semi-structured data models. In fact, SIB-ESS-C data are stored in a relational database, to provide performant access even to huge amounts of data. The SibesscAccessor is in charge of establishing a JDBC connection to the database, reading the data by means of SQL statements, creating Java objects according to the ISO 19115 data model, and marshalling the resulting information to an XML document. During the implementation of the SibesscAccessor, the mix of technologies and deployment environments and the geographical distribution of the development teams turned out to be important issues. To solve them, we relied on technologies and tools for collaborative software development: the Maven build system, the SVN version control system, the XPlanner project planning and tracking tool, and of course VOIP tools. Moreover, we shipped the Accessor Development Kit (ADK) Java library, containing the classes needed for extending GI-cat to custom community catalog/inventory services and other supporting material (documentation, best-practices, examples). The ADK is distributed as a Maven