Sample records for hyper spectral imagings

  1. Biologically-inspired data decorrelation for hyper-spectral imaging

    Directory of Open Access Journals (Sweden)

    Ghita Ovidiu


    Full Text Available Abstract Hyper-spectral data allows the construction of more robust statistical models to sample the material properties than the standard tri-chromatic color representation. However, because of the large dimensionality and complexity of the hyper-spectral data, the extraction of robust features (image descriptors is not a trivial issue. Thus, to facilitate efficient feature extraction, decorrelation techniques are commonly applied to reduce the dimensionality of the hyper-spectral data with the aim of generating compact and highly discriminative image descriptors. Current methodologies for data decorrelation such as principal component analysis (PCA, linear discriminant analysis (LDA, wavelet decomposition (WD, or band selection methods require complex and subjective training procedures and in addition the compressed spectral information is not directly related to the physical (spectral characteristics associated with the analyzed materials. The major objective of this article is to introduce and evaluate a new data decorrelation methodology using an approach that closely emulates the human vision. The proposed data decorrelation scheme has been employed to optimally minimize the amount of redundant information contained in the highly correlated hyper-spectral bands and has been comprehensively evaluated in the context of non-ferrous material classification

  2. Hyper-Spectral Imager in visible and near-infrared band for lunar ...

    Indian Academy of Sciences (India)

    Abstract. India 's first lunar mission,Chandrayaan-1,will have a Hyper-Spectral Imager in the visible and near-infrared spectral bands along with other instruments.The instrument will enable mineralogical mapping of the Moon 's crust in a large number of spectral channels.The planned Hyper-Spectral Imager will be the first ...

  3. Pigment identification in pictorial layers by HyperSpectral Imaging (United States)

    Capobianco, Giuseppe; Bonifazi, Giuseppe; Prestileo, Fernanda; Serranti, Silvia


    The use of Hyper-Spectral Imaging (HSI) as a diagnostic tool in the field of cultural heritage is of great interest presenting high potentialities. This analysis, in fact, is non-destructive, non-invasive and portable. Furthermore, the possibility to couple hyperspectral data with chemometric techniques allows getting qualitative and/or quantitative information on the nature and physical-chemical characteristics of the investigated materials. A study was carried out to explore the possibilities offered by this approach to identify pigments in paintings. More in detail, six pigments have been selected and they have been then mixed with four different binders and applied to a wood support. The resulting reference samples were acquired by HSI in the SWIR wavelength range (1000-2500 nm). Data were processed adopting a chemometric approach based on the PLS Toolbox (Eigenvector Research, Inc.) running inside Matlab® (The Mathworks, Inc.). The aim of the study was to verify, according to the information acquired in the investigated wavelength region, the correlation existing between collected spectral signatures and sample characteristics related to the different selected pigments and binders. Results were very good showing as correlations exist. New scenarios can thus be envisaged for analysis, characterization, conservation and restoration of paintings, considering that the developed approach allows to obtain, just "in one shot", information, not only on the type of pigment, but also on the utilized binder and support.

  4. Near-Infrared Hyper-spectral Image Analysis of Astaxanthin Concentration in Fish Feed Coating

    DEFF Research Database (Denmark)

    Ljungqvist, Martin Georg; Ersbøll, Bjarne Kjær; Kobayashi, K.


    The aim of this study was to investigate the possibility of predicting concentration levels of synthetic astaxanthin coating of aquaculture feed pellets by hyper-spectral image analysis in the near infra-red (NIR) range and optical filter design. The imaging devices used were a VideometerLab with...... for prediction of the concentration level. The results show that it is possible to predict the level of synthetic astaxanthin coating using either hyper-spectral imaging or three bandpass filters (BPF)....

  5. Bandwidth Controllable Tunable Filter for Hyper-/Multi-Spectral Imager Project (United States)

    National Aeronautics and Space Administration — This SBIR Phase I proposal introduces a fast speed bandwidth controllable tunable filter for hyper-/multi-spectral (HS/MS) imagers. It dynamically passes a variable...

  6. Ground-based Observation System Development for the Moon Hyper-spectral Imaging (United States)

    Wang, Yang; Huang, Yu; Wang, Shurong; Li, Zhanfeng; Zhang, Zihui; Hu, Xiuqing; Zhang, Peng


    The Moon provides a suitable radiance source for on-orbit calibration of space-borne optical instruments. A ground-based observation system dedicated to the hyper-spectral radiometry of the Moon has been developed for improving and validating the current lunar model. The observation instrument using a dispersive imaging spectrometer is particularly designed for high-accuracy observations of the lunar radiance. The simulation and analysis of the push-broom mechanism is made in detail for lunar observations, and the automated tracking and scanning is well accomplished in different observational condition. A three-month series of hyper-spectral imaging experiments of the Moon have been performed in the wavelength range from 400 to 1000 nm near Lijiang Observatory (Yunnan, China) at phase angles -83°-87°. Preliminary results and data comparison are presented, and it shows the instrument performance and lunar observation capability of this system are well validated. Beyond previous measurements, this observation system provides the entire lunar disk images of continuous spectral coverage by adopting the push-broom mode with special scanning scheme and leads to the further research of lunar photometric model.

  7. Groupwise consistent image registration: a crucial step for the construction of a standardized near infrared hyper-spectral teeth database (United States)

    Špiclin, Žiga; Usenik, Peter; Bürmen, Miran; Fidler, Aleš; Pernuš, Franjo; Likar, Boštjan


    Construction of a standardized near infrared (NIR) hyper-spectral teeth database is a first step in the development of a reliable diagnostic tool for quantification and early detection of dental diseases. The standardized diffuse reflectance hyper-spectral database was constructed by imaging 12 extracted human teeth with natural lesions of various degrees in the spectral range from 900 to 1700 nm with spectral resolution of 10 nm. Additionally, all the teeth were imaged by X-ray and digital color camera. The color and X-ray teeth images were presented to the expert for localization and classification of the dental diseases, thereby obtaining a dental disease gold standard. Accurate transfer of the dental disease gold standard to the NIR images was achieved by image registration in a groupwise manner, taking advantage of the multichannel image information and promoting image edges as the features for the improvement of spatial correspondence detection. By the presented fully automatic multi-modal groupwise registration method, images of new teeth samples can be accurately and reliably registered and then added to the standardized NIR hyper-spectral teeth database. Adding more samples increases the biological and patho-physiological variability of the NIR hyper-spectral teeth database and can importantly contribute to the objective assessment of the sensitivity and specificity of multivariate image analysis techniques used for the detection of dental diseases. Such assessment is essential for the development and validation of reliable qualitative and especially quantitative diagnostic tools based on NIR spectroscopy.

  8. Radiometric flight results from the HyperSpectral Imager for Climate Science (HySICS) (United States)

    Kopp, Greg; Smith, Paul; Belting, Chris; Castleman, Zach; Drake, Ginger; Espejo, Joey; Heuerman, Karl; Lanzi, James; Stuchlik, David


    Long-term monitoring of the Earth-reflected solar spectrum is necessary for discerning and attributing changes in climate. High radiometric accuracy enables such monitoring over decadal timescales with non-overlapping instruments, and high precision enables trend detection on shorter timescales. The HyperSpectral Imager for Climate Science (HySICS) is a visible and near-infrared spatial/spectral imaging spectrometer intended to ultimately achieve ˜ 0.2 % radiometric accuracies of Earth scenes from space, providing an order-of-magnitude improvement over existing space-based imagers. On-orbit calibrations from measurements of spectral solar irradiances acquired by direct views of the Sun enable radiometric calibrations with superior long-term stability than is currently possible with any manmade spaceflight light source or detector. Solar and lunar observations enable in-flight focal-plane array (FPA) flat-fielding and other instrument calibrations. The HySICS has demonstrated this solar cross-calibration technique for future spaceflight instrumentation via two high-altitude balloon flights. The second of these two flights acquired high-radiometric-accuracy measurements of the ground, clouds, the Earth's limb, and the Moon. Those results and the details of the uncertainty analyses of those flight data are described.

  9. A new COmpact hyperSpectral Imaging system (COSI) for UAS (United States)

    Sima, Aleksandra; Baeck, Pieter-Jan; Delalieux, Stephanie; Livens, Stefan; Blommaert, Joris; Delauré, Bavo; Boonen, Miet


    This presentation gives an overview of the new COmpact hyperSpectral Imaging (COSI) system recently developed at the Flemish Institute for Technological Research (VITO, Belgium) and suitable for multirotor Remotely Piloted Aircraft Systems (RPAS) platforms. The camera is compact and lightweight, with a total mass of less than 500g including: an embedded computer, storage and power distribution unit. Such device miniaturization was possible thanks to the application of linear variable filters technology, in which image lines in the across flight direction correspond to different spectral bands as well as a different location on the ground (frame camera). The scanning motion is required to retrieve the complete spectrum for every point on the ground. The COSI camera captures data in 72 narrow (FWHM: 5nm to 10 nm) bands in the spectral range of 600-900 nm. Such spectral information is highly favourable for vegetation studies, since the main chlorophyll absorption feature centred around 680 nm is measured, as well as, the red-edge region (680 nm to 730 nm) which is often linked to plant stress. The NIR region furthermore reflects the internal plant structure, and is often linked to leaf area index and plant biomass. Next to the high spectral resolution, the COSI imager also provides a very high spatial data resolution i.e. images captured with a 9mm lens at 40m altitude cover a swath of ~40m with a ~2cm ground sampling distance. A dedicated data processing chain transforms the raw images into various information and action maps representing the status of the vegetation health and thus allowing for optimization of the management decisions within agricultural fields. In a number of test flights, hyperspectral COSI imager data were acquired covering diverse environments, e.g.: strawberry fields, natural grassland or pear orchards. Next to the COSI system overview, examples of collected data will be presented together with the results of the spectral data analysis. Lessons

  10. Automated classification and visualization of healthy and pathological dental tissues based on near-infrared hyper-spectral imaging (United States)

    Usenik, Peter; Bürmen, Miran; Vrtovec, Tomaž; Fidler, Aleš; Pernuš, Franjo; Likar, Boštjan


    Despite major improvements in dental healthcare and technology, dental caries remains one of the most prevalent chronic diseases of modern society. The initial stages of dental caries are characterized by demineralization of enamel crystals, commonly known as white spots which are difficult to diagnose. If detected early enough, such demineralization can be arrested and reversed by non-surgical means through well established dental treatments (fluoride therapy, anti-bacterial therapy, low intensity laser irradiation). Near-infrared (NIR) hyper-spectral imaging is a new promising technique for early detection of demineralization based on distinct spectral features of healthy and pathological dental tissues. In this study, we apply NIR hyper-spectral imaging to classify and visualize healthy and pathological dental tissues including enamel, dentin, calculus, dentin caries, enamel caries and demineralized areas. For this purpose, a standardized teeth database was constructed consisting of 12 extracted human teeth with different degrees of natural dental lesions imaged by NIR hyper-spectral system, X-ray and digital color camera. The color and X-ray images of teeth were presented to a clinical expert for localization and classification of the dental tissues, thereby obtaining the gold standard. Principal component analysis was used for multivariate local modeling of healthy and pathological dental tissues. Finally, the dental tissues were classified by employing multiple discriminant analysis. High agreement was observed between the resulting classification and the gold standard with the classification sensitivity and specificity exceeding 85 % and 97 %, respectively. This study demonstrates that NIR hyper-spectral imaging has considerable diagnostic potential for imaging hard dental tissues.

  11. A HyperSpectral Imaging (HSI) approach for bio-digestate real time monitoring (United States)

    Bonifazi, Giuseppe; Fabbri, Andrea; Serranti, Silvia


    One of the key issues in developing Good Agricultural Practices (GAP) is represented by the optimal utilisation of fertilisers and herbicidal to reduce the impact of Nitrates in soils and the environment. In traditional agriculture practises, these substances were provided to the soils through the use of chemical products (inorganic/organic fertilizers, soil improvers/conditioners, etc.), usually associated to several major environmental problems, such as: water pollution and contamination, fertilizer dependency, soil acidification, trace mineral depletion, over-fertilization, high energy consumption, contribution to climate change, impacts on mycorrhizas, lack of long-term sustainability, etc. For this reason, the agricultural market is more and more interested in the utilisation of organic fertilisers and soil improvers. Among organic fertilizers, there is an emerging interest for the digestate, a sub-product resulting from anaerobic digestion (AD) processes. Several studies confirm the high properties of digestate if used as organic fertilizer and soil improver/conditioner. Digestate, in fact, is somehow similar to compost: AD converts a major part of organic nitrogen to ammonia, which is then directly available to plants as nitrogen. In this paper, new analytical tools, based on HyperSpectral Imaging (HSI) sensing devices, and related detection architectures, is presented and discussed in order to define and apply simple to use, reliable, robust and low cost strategies finalised to define and implement innovative smart detection engines for digestate characterization and monitoring. This approach is finalized to utilize this "waste product" as a valuable organic fertilizer and soil conditioner, in a reduced impact and an "ad hoc" soil fertilisation perspective. Furthermore, the possibility to contemporary utilize the HSI approach to realize a real time physicalchemical characterisation of agricultural soils (i.e. nitrogen, phosphorus, etc., detection) could

  12. Quality control by HyperSpectral Imaging (HSI) in solid waste recycling: logics, algorithms and procedures (United States)

    Bonifazi, Giuseppe; Serranti, Silvia


    strategies. The problems arising when suitable HyperSpectral Imaging (HSI) based procedures have to be developed and implemented to solid waste products characterization, in order to define time efficient compression and interpretation techniques, are thus analyzed and discussed in the following. Particular attention was also addressed to define an integrated hardware and software (HW and SW) platform able to perform a non-intrusive, non-contact and real-time analysis and embedding a core of analytical logics and procedures to utilize both at laboratory and industrial scale. Several case studies, referred to waste plastics products, are presented and discussed.

  13. Controlling system for smart hyper-spectral imaging array based on liquid-crystal Fabry-Perot device (United States)

    Jiang, Xue; Chen, Xin; Rong, Xin; Liu, Kan; Zhang, Xinyu; Ji, An; Xie, Changsheng


    A research for developing a kind of smart spectral imaging detection technique based on the electrically tunable liquidcrystal (LC) FP structure is launched. It has some advantages of low cost, highly compact integration, perfuming wavelength selection without moving any micro-mirror of FP device, and the higher reliability and stability. The controlling system for hyper-spectral imaging array based on LC-FP device includes mainly a MSP430F5438 as its core. Considering the characteristics of LC-FP device, the controlling system can provide a driving signal of 1-10 kHz and 0- 30Vrms for the device in a static driving mode. This paper introduces the hardware designing of the control system in detail. It presents an overall hardware solutions including: (1) the MSP430 controlling circuit, and (2) the operational amplifier circuit, and (3) the power supply circuit, and (4) the AD conversion circuit. The techniques for the realization of special high speed digital circuits, which is necessary for the PCB employed, is also discussed.

  14. Hyper-spectral scanner design and analysis

    Energy Technology Data Exchange (ETDEWEB)

    Canavan, G.; Moses, J.; Smith, R.


    This is the final report of a two-year, Laboratory Directed Research and Development (LDRD) project at the Los Alamos National Laboratory (LANL). An earlier project produced rough designs for key components of a compact hyper-spectral sensor for environmental and ecological measurements. Such sensors could be deployed on unmanned vehicles, aircraft, or satellites for measurements important to agriculture, the environment, and ecologies. This represents an important advance in remote sensing. Motorola invited us to propose an add-on, proof-of-principle sensor for their Comet satellite, whose primary mission is to demonstrate a channel of the IRIDIUM satellite communications system. Our project converted the preliminary designs from the previous effort into final designs for the telescope, camera, computer and interfaces that constitute the hyper-spectral scanning sensor. The work concentrated on design, fabrication, preliminary integration, and testing of the electronic circuit boards for the computer, data compression board, and interface board for the camera-computer and computer-modulator (transmitter) interfaces.

  15. Hyper-spectral frequency selection for the classification of vegetation diseases

    NARCIS (Netherlands)

    Dijkstra, Klaas; van de Loosdrecht, Jaap; Schomaker, Lambert; Wiering, Marco


    Reducing the use of pesticides by early visual detection of diseases in precision agriculture is important. Because of the color similarity between potato-plant diseases, narrow band hyper-spectral imaging is required. Payload constraints on unmanned aerial vehicles require reduction of spectral

  16. Hyper-spectral frequency selection for the classification of vegetation diseases

    NARCIS (Netherlands)

    K. Dijkstra; Jaap van de Loosdrecht; L.R.B. Schomaker; M.A. Wiering


    Reducing the use of pesticides by early visual detection of diseases in precision agriculture is important. Because of the color similarity between potato-plant diseases, narrow band hyper-spectral imaging is required. Payload constraints on unmanned aerial vehicles require reduc- tion of spectral

  17. Spectral Imaging by Upconversion

    DEFF Research Database (Denmark)

    Dam, Jeppe Seidelin; Pedersen, Christian; Tidemand-Lichtenberg, Peter


    We present a method to obtain spectrally resolved images using upconversion. By this method an image is spectrally shifted from one spectral region to another wavelength. Since the process is spectrally sensitive it allows for a tailored spectral response. We believe this will allow standard...... silicon based cameras designed for visible/near infrared radiation to be used for spectral images in the mid infrared. This can lead to much lower costs for such imaging devices, and a better performance....

  18. Application of hyper spectral imagings techniques to study soil degradation in arid environments. (Los Monegros, Spain); Aplicacion de tecnicas hiperespectrales de imagen al estudio de la degradacion de suelos en ambientes aridos (Los Monegros, Espana)

    Energy Technology Data Exchange (ETDEWEB)

    Gumuzzio Such, A.; Palacios Orueta, A.; Schmid, T.; Dominguez, J. A.; Gumuzzio, J.


    The aim of this work is to identify characteristics associated to soils affected by degradation within and arid area of Spain using optical hyper spectral airborne data. The methodological approach was developed to determine the spatial distribution of selected soils affected by degradation processes. A satisfactory spatial distribution is obtained where the corresponding soil characteristics are closely related to degradation processes. (Author) 2 refs.

  19. Spectral phasor analysis allows rapid and reliable unmixing of fluorescence microscopy spectral images

    NARCIS (Netherlands)

    Fereidouni, F.|info:eu-repo/dai/nl/372641431; Bader, A.N.|info:eu-repo/dai/nl/291137334; Gerritsen, H.C.|info:eu-repo/dai/nl/071548777


    A new global analysis algorithm to analyse (hyper-) spectral images is presented. It is based on the phasor representation that has been demonstrated to be very powerful for the analysis of lifetime imaging data. In spectral phasor analysis the fluorescence spectrum of each pixel in the image is

  20. A fluorescence LIDAR sensor for hyper-spectral time-resolved remote sensing and mapping. (United States)

    Palombi, Lorenzo; Alderighi, Daniele; Cecchi, Giovanna; Raimondi, Valentina; Toci, Guido; Lognoli, David


    In this work we present a LIDAR sensor devised for the acquisition of time resolved laser induced fluorescence spectra. The gating time for the acquisition of the fluorescence spectra can be sequentially delayed in order to achieve fluorescence data that are resolved both in the spectral and temporal domains. The sensor can provide sub-nanometric spectral resolution and nanosecond time resolution. The sensor has also imaging capabilities by means of a computer-controlled motorized steering mirror featuring a biaxial angular scanning with 200 μradiant angular resolution. The measurement can be repeated for each point of a geometric grid in order to collect a hyper-spectral time-resolved map of an extended target.

  1. Accelerating hyper-spectral data processing on the multi-CPU and multi-GPU heterogeneous computing platform (United States)

    Zhang, Lei; Gao, Jiao Bo; Hu, Yu; Wang, Ying Hui; Sun, Ke Feng; Cheng, Juan; Sun, Dan Dan; Li, Yu


    During the research of hyper-spectral imaging spectrometer, how to process the huge amount of image data is a difficult problem for all researchers. The amount of image data is about the order of magnitude of several hundred megabytes per second. The only way to solve this problem is parallel computing technology. With the development of multi-core CPU and GPU parallel computing on multi-core CPU or GPU is increasingly applied in large-scale data processing. In this paper, we propose a new parallel computing solution of hyper-spectral data processing which is based on the multi-CPU and multi-GPU heterogeneous computing platform. We use OpenMP technology to control multi-core CPU, we also use CUDA to schedule the parallel computing on multi-GPU. Experimental results show that the speed of hyper-spectral data processing on the multi-CPU and multi-GPU heterogeneous computing platform is apparently faster than the traditional serial algorithm which is run on single core CPU. Our research has significant meaning for the engineering application of the windowing Fourier transform imaging spectrometer.

  2. Interpretation of archaeological small-scale features in spectral images

    DEFF Research Database (Denmark)

    Grøn, Ole; Palmer, Susanna; Stylegar, Frans-Arne


    The paper's focus is the use of spectral images for the distinction of small archaeological anomalies on the basis of the authors work. Special attention is given to the ground-truthing perspective in the discussion of a number of cases from Norway. Different approaches to pattern-recognition...... are considered in the light of the increasing availability of hyper-spectral images that are difficult to analyse using visual inspection alone....

  3. Matched Spectral Filter Imager Project (United States)

    National Aeronautics and Space Administration — OPTRA proposes the development of an imaging spectrometer for greenhouse gas and volcanic gas imaging based on matched spectral filtering and compressive imaging....

  4. Wavelength conversion based spectral imaging

    DEFF Research Database (Denmark)

    Dam, Jeppe Seidelin

    There has been a strong, application driven development of Si-based cameras and spectrometers for imaging and spectral analysis of light in the visible and near infrared spectral range. This has resulted in very efficient devices, with high quantum efficiency, good signal to noise ratio and high...... resolution for this spectral region. Today, an increasing number of applications exists outside the spectral region covered by Si-based devices, e.g. within cleantech, medical or food imaging. We present a technology based on wavelength conversion which will extend the spectral coverage of state of the art...... visible or near infrared cameras and spectrometers to include other spectral regions of interest....

  5. A construction of standardized near infrared hyper-spectral teeth database: a first step in the development of reliable diagnostic tool for quantification and early detection of caries (United States)

    Bürmen, Miran; Usenik, Peter; Fidler, Aleš; Pernuš, Franjo; Likar, Boštjan


    Dental caries is a disease characterized by demineralization of enamel crystals leading to the penetration of bacteria into the dentin and pulp. If left untreated, the disease can lead to pain, infection and tooth loss. Early detection of enamel demineralization resulting in increased enamel porosity, commonly known as white spots, is a difficult diagnostic task. Several papers reported on near infrared (NIR) spectroscopy to be a potentially useful noninvasive spectroscopic technique for early detection of caries lesions. However, the conducted studies were mostly qualitative and did not include the critical assessment of the spectral variability of the sound and carious dental tissues and influence of the water content. Such assessment is essential for development and validation of reliable qualitative and especially quantitative diagnostic tools based on NIR spectroscopy. In order to characterize the described spectral variability, a standardized diffuse reflectance hyper-spectral database was constructed by imaging 12 extracted human teeth with natural lesions of various degrees in the spectral range from 900 to 1700 nm with spectral resolution of 10 nm. Additionally, all the teeth were imaged by digital color camera. The influence of water content on the acquired spectra was characterized by monitoring the teeth during the drying process. The images were assessed by an expert, thereby obtaining the gold standard. By analyzing the acquired spectra we were able to accurately model the spectral variability of the sound dental tissues and identify the advantages and limitations of NIR hyper-spectral imaging.

  6. Nonlinear spectral imaging of fungi

    NARCIS (Netherlands)

    Knaus, H.


    Nonlinear microscopy combined with fluorescence spectroscopy is known as nonlinear spectral imaging microscopy (NLSM). This method provides simultaneously specimen morphology – distinguishing different parts in a tissue – and (auto)fluorescence spectra, thus their biochemical composition. A novel

  7. Multi-spectral imager

    CSIR Research Space (South Africa)

    Stolper, R


    Full Text Available This poster highlights the design and development of a camera which combines ultraviolet, infrared and visual imaging techniques for advanced diagnostic inspections, and also shows some evaluations carried out to demonstrate the operability...

  8. Characterization of cirrus clouds and atmospheric state using a new hyper-spectral optimal estimation retrieval (United States)

    Veglio, P.; Holz, R.


    The importance of cirrus clouds as regulators of Earth's climate and radiation budget has been widely demonstrated, but still their characterization remains challenging. In order to derive cirrus properties, many retrieval techniques rely on prior assumptions on the atmospheric state or on the ice microphysics, either because the computational cost is too high or because the measurements do not have enough information, as in the case of broadband sensors. In this work we present a novel infrared hyper-spectral optimal estimation retrieval capable of simultaneously deriving cirrus cloud parameters (optical depth, effective radius, cloud top height) and atmospheric state (temperature and water vapor profiles) with their associated uncertainties by using a fast forward radiative transfer code. The use of hyperspectral data help overcoming the problem of the information content while the computational cost can be addressed by using a fast radiative transfer model. The tradeoff of this choice is an increasing in the complexity of the problem. Also, it is important to consider that by using a fast, approximate radiative transfer model, the uncertainties must be carefully evaluated in order to prevent or minimize any biases that could negatively affect the results. For this application data from the HS3 field campaign are used, which provide high quality hyper-spectral measurements from Scanning HIS along with CPL and possibly also dropsonde data and GDAS reanalysis to help validate the results. The future of this work will be to move from aircraft to satellite observations, and the natural choice is AIRS and CALIOP that offer a similar setup to what is currently used for this study.

  9. Radiative modeling and characterization of aerosol plumes hyper-spectral imagery; Modelisation radiative et caracterisation des panaches d'aerosols en imagerie hyperspectrale

    Energy Technology Data Exchange (ETDEWEB)

    Alakian, A


    This thesis aims at characterizing aerosols from plumes (biomass burning, industrial discharges, etc.) with hyper-spectral imagery. We want to estimate the optical properties of emitted particles and also their micro-physical properties such as number, size distribution and composition. To reach our goal, we have built a forward semi-analytical model, named APOM (Aerosol Plume Optical Model), which allows to simulate the radiative effects of aerosol plumes in the spectral range [0,4-2,5 {mu}m] for nadir viewing sensors. Mathematical formulation and model coefficients are obtained from simulations performed with the radiative transfer code COMANCHE. APOM is assessed on simulated data and proves to be accurate with modeling errors between 1% and 3%. Three retrieval methods using APOM have been developed: L-APOM, M-APOM and A-APOM. These methods take advantage of spectral and spatial dimensions in hyper-spectral images. L-APOM and M-APOM assume a priori knowledge on particles but can estimate their optical and micro-physical properties. Their performances on simulated data are quite promising. A-APOM method does not require any a priori knowledge on particles but only estimates their optical properties. However, it still needs improvements before being usable. On real images, inversion provides satisfactory results for plumes above water but meets some difficulties for plumes above vegetation, which underlines some possibilities of improvement for the retrieval algorithm. (author)

  10. Fluorescence and Spectral Imaging

    Directory of Open Access Journals (Sweden)

    Ralph S. DaCosta


    Full Text Available Early identification of dysplasia remains a critical goal for diagnostic endoscopy since early discovery directly improves patient survival because it allows endoscopic or surgical intervention with disease localized without lymph node involvement. Clinical studies have successfully used tissue autofluorescence with conventional white light endoscopy and biopsy for detecting adenomatous colonic polyps, differentiating benign hyperplastic from adenomas with acceptable sensitivity and specificity. In Barrett's esophagus, the detection of dysplasia remains problematic because of background inflammation, whereas in the squamous esophagus, autofluorescence imaging appears to be more dependable. Point fluorescence spectroscopy, although playing a crucial role in the pioneering mechanistic development of fluorescence endoscopic imaging, does not seem to have a current function in endoscopy because of its nontargeted sampling and suboptimal sensitivity and specificity. Other point spectroscopic modalities, such as Raman spectroscopy and elastic light scattering, continue to be evaluated in clinical studies, but still suffer the significant disadvantages of being random and nonimaging. A recent addition to the fluorescence endoscopic imaging arsenal is the use of confocal fluorescence endomicroscopy, which provides real-time optical biopsy for the first time. To improve detection of dysplasia in the gastrointestinal tract, a new and exciting development has been the use of exogenous fluorescence contrast probes that specifically target a variety of disease-related cellular biomarkers using conventional fluorescent dyes and novel potent fluorescent nanocrystals (i.e., quantum dots. This is an area of great promise, but still in its infancy, and preclinical studies are currently under way.

  11. Hyper-Spectral Networking Concept of Operations and Future Air Traffic Management Simulations (United States)

    Davis, Paul; Boisvert, Benjamin


    The NASA sponsored Hyper-Spectral Communications and Networking for Air Traffic Management (ATM) (HSCNA) project is conducting research to improve the operational efficiency of the future National Airspace System (NAS) through diverse and secure multi-band, multi-mode, and millimeter-wave (mmWave) wireless links. Worldwide growth of air transportation and the coming of unmanned aircraft systems (UAS) will increase air traffic density and complexity. Safe coordination of aircraft will require more capable technologies for communications, navigation, and surveillance (CNS). The HSCNA project will provide a foundation for technology and operational concepts to accommodate a significantly greater number of networked aircraft. This paper describes two of the HSCNA projects technical challenges. The first technical challenge is to develop a multi-band networking concept of operations (ConOps) for use in multiple phases of flight and all communication link types. This ConOps will integrate the advanced technologies explored by the HSCNA project and future operational concepts into a harmonized vision of future NAS communications and networking. The second technical challenge discussed is to conduct simulations of future ATM operations using multi-bandmulti-mode networking and technologies. Large-scale simulations will assess the impact, compared to todays system, of the new and integrated networks and technologies under future air traffic demand.

  12. Improvement to the PhytoDOAS method for identification of coccolithophores using hyper-spectral satellite data

    Directory of Open Access Journals (Sweden)

    A. Sadeghi


    Full Text Available The goal of this study was to improve PhytoDOAS, which is a new retrieval method for quantitative identification of major phytoplankton functional types (PFTs using hyper-spectral satellite data. PhytoDOAS is an extension of the Differential Optical Absorption Spectroscopy (DOAS, a method for detection of atmospheric trace gases, developed for remote identification of oceanic phytoplankton groups. Thus far, PhytoDOAS has been successfully exploited to identify cyanobacteria and diatoms over the global ocean from SCIAMACHY (SCanning Imaging Absorption spectroMeter for Atmospheric CHartographY hyper-spectral data. This study aimed to improve PhytoDOAS for remote identification of coccolithophores, another functional group of phytoplankton. The main challenge for retrieving more PFTs by PhytoDOAS is to overcome the correlation effects between different PFT absorption spectra. Different PFTs are composed of different types and amounts of pigments, but also have pigments in common, e.g. chl a, causing correlation effects in the usual performance of the PhytoDOAS retrieval. Two ideas have been implemented to improve PhytoDOAS for the PFT retrieval of more phytoplankton groups. Firstly, using the fourth-derivative spectroscopy, the peak positions of the main pigment components in each absorption spectrum have been derived. After comparing the corresponding results of major PFTs, the optimized fit-window for the PhytoDOAS retrieval of each PFT was determined. Secondly, based on the results from derivative spectroscopy, a simultaneous fit of PhytoDOAS has been proposed and tested for a selected set of PFTs (coccolithophores, diatoms and dinoflagellates within an optimized fit-window, proven by spectral orthogonality tests. The method was then applied to the processing of SCIAMACHY data over the year 2005. Comparisons of the PhytoDOAS coccolithophore retrievals in 2005 with other coccolithophore-related data showed similar patterns in their

  13. Spectral clustering for TRUS images

    Directory of Open Access Journals (Sweden)

    Salama Magdy MA


    Full Text Available Abstract Background Identifying the location and the volume of the prostate is important for ultrasound-guided prostate brachytherapy. Prostate volume is also important for prostate cancer diagnosis. Manual outlining of the prostate border is able to determine the prostate volume accurately, however, it is time consuming and tedious. Therefore, a number of investigations have been devoted to designing algorithms that are suitable for segmenting the prostate boundary in ultrasound images. The most popular method is the deformable model (snakes, a method that involves designing an energy function and then optimizing this function. The snakes algorithm usually requires either an initial contour or some points on the prostate boundary to be estimated close enough to the original boundary which is considered a drawback to this powerful method. Methods The proposed spectral clustering segmentation algorithm is built on a totally different foundation that doesn't involve any function design or optimization. It also doesn't need any contour or any points on the boundary to be estimated. The proposed algorithm depends mainly on graph theory techniques. Results Spectral clustering is used in this paper for both prostate gland segmentation from the background and internal gland segmentation. The obtained segmented images were compared to the expert radiologist segmented images. The proposed algorithm obtained excellent gland segmentation results with 93% average overlap areas. It is also able to internally segment the gland where the segmentation showed consistency with the cancerous regions identified by the expert radiologist. Conclusion The proposed spectral clustering segmentation algorithm obtained fast excellent estimates that can give rough prostate volume and location as well as internal gland segmentation without any user interaction.

  14. Spectral clustering for TRUS images. (United States)

    Mohamed, Samar S; Salama, Magdy M A


    Identifying the location and the volume of the prostate is important for ultrasound-guided prostate brachytherapy. Prostate volume is also important for prostate cancer diagnosis. Manual outlining of the prostate border is able to determine the prostate volume accurately, however, it is time consuming and tedious. Therefore, a number of investigations have been devoted to designing algorithms that are suitable for segmenting the prostate boundary in ultrasound images. The most popular method is the deformable model (snakes), a method that involves designing an energy function and then optimizing this function. The snakes algorithm usually requires either an initial contour or some points on the prostate boundary to be estimated close enough to the original boundary which is considered a drawback to this powerful method. The proposed spectral clustering segmentation algorithm is built on a totally different foundation that doesn't involve any function design or optimization. It also doesn't need any contour or any points on the boundary to be estimated. The proposed algorithm depends mainly on graph theory techniques. Spectral clustering is used in this paper for both prostate gland segmentation from the background and internal gland segmentation. The obtained segmented images were compared to the expert radiologist segmented images. The proposed algorithm obtained excellent gland segmentation results with 93% average overlap areas. It is also able to internally segment the gland where the segmentation showed consistency with the cancerous regions identified by the expert radiologist. The proposed spectral clustering segmentation algorithm obtained fast excellent estimates that can give rough prostate volume and location as well as internal gland segmentation without any user interaction.

  15. Transient circadian hyper-amplitude-tension (CHAT) may be intermittent: case reports illustrating gliding spectral windows. (United States)

    Katinas, George; Halberg, Franz; Cornélissen, Germaine; Otsuka, Kuniaki; Tarquini, Roberto; Perfetto, Federico; Maggioni, Cristina; Schwartzkopff, Othild; Bakken, Earl


    Taking the heart rate (HR) for one cycle, whether to examine behavior in the region of periods of 1 s, 1 day, 1 week, 1.3 or 10.5 years, etc., is hazardous. Replications, when possible are mandatory for examining altered variability, whatever the period(s) involved may be. This replication in the individual, and across individuals when the periods are long, measured in decades, may serve for diagnosis and treatment. This rule applies in particular to a seemingly transient circadian hyper-amplitude-tension (CHAT), an over peer-threshold variability in blood pressure (BP), based on the fit of a 24-h cosine curve to time series of appropriate length, rather than to a mere snapshot covering just a single day or week. Transient CHAT may turn into intermittent CHAT, as determined in two cases presented herein. One case of transient CHAT could be so named after a successful treatment (Rx) change eliminated CHAT as an effect validated by monitoring at 30-min intervals for a 7-day span on a new treatment. CHAT disappeared for over 300 consecutive half-hourly measurements, but thereafter it reappeared. During the ensuing nearly continuously monitored 5 years, CHAT continued to appear and disappear sometimes without a treatment change. In another case, which was responsive to a change in the timing of medication, CHAT also disappeared and thereafter reappeared. In a short-term perspective of weeks or months of monitoring, CHAT seemed to be transient, but further monitoring again revealed it to be intermittent. Cases of intermittent CHAT require follow-up for outcomes by comparison with the population at large. Miniaturized instrumentation for their detection should be a high priority, but it must be realized that the automatic ambulatorily functioning monitors, available at 10% of the regular price through a BIOCOS project (, already signify great progress, as compared to previously used manual measurements made around the clock by hypertensive opinion

  16. Cryptanalysis of a new image encryption algorithm based on hyper-chaos

    Energy Technology Data Exchange (ETDEWEB)

    Rhouma, Rhouma [6' com laboratory, Ecole Nationale d' Ingenieurs de Tunis (ENIT) (Tunisia)], E-mail:; Belghith, Safya [6' com laboratory, Ecole Nationale d' Ingenieurs de Tunis (ENIT) (Tunisia)], E-mail:


    This Letter proposes two different attacks on a recently proposed image based on hyper-chaos. The cryptosystem under study proceed first by shuffling the image rows and columns to disturb the high correlation among pixels by iterating the logistic map. Second, a keystream is generated to mix it with the pixels of the shuffled image using hyper-chaos. These two processes in the encryption stage present weakness, and a chosen plaintext attack and a chosen ciphertext attack can be done to recover the ciphered-image without any knowledge of the key value. It just demands three couples of plaintext/ciphertext to break totally the cryptosystem.


    National Aeronautics and Space Administration — The natural form of imaging spectrometer data is the spectral image cube. It is normally in band sequential format, but has a dual nature. It is a series of 'images'...


    National Aeronautics and Space Administration — The natural form of imaging spectrometer data is the spectral image cube. It is normally in band sequential format, but has a dual nature. It is a series of 'images'...

  19. Calibrating spectral images using penalized likelihood

    NARCIS (Netherlands)

    Heijden, van der G.W.A.M.; Glasbey, C.


    A new method is presented for automatic correction of distortions and for spectral calibration (which band corresponds to which wavelength) of spectral images recorded by means of a spectrograph. The method consists of recording a bar-like pattern with an illumination source with spectral bands

  20. Quantum Color Image Encryption Algorithm Based on A Hyper-Chaotic System and Quantum Fourier Transform (United States)

    Tan, Ru-Chao; Lei, Tong; Zhao, Qing-Min; Gong, Li-Hua; Zhou, Zhi-Hong


    To improve the slow processing speed of the classical image encryption algorithms and enhance the security of the private color images, a new quantum color image encryption algorithm based on a hyper-chaotic system is proposed, in which the sequences generated by the Chen's hyper-chaotic system are scrambled and diffused with three components of the original color image. Sequentially, the quantum Fourier transform is exploited to fulfill the encryption. Numerical simulations show that the presented quantum color image encryption algorithm possesses large key space to resist illegal attacks, sensitive dependence on initial keys, uniform distribution of gray values for the encrypted image and weak correlation between two adjacent pixels in the cipher-image.

  1. Precise Multi-Spectral Dermatological Imaging

    DEFF Research Database (Denmark)

    Gomez, David Delgado; Carstensen, Jens Michael; Ersbøll, Bjarne Kjær


    In this work, an integrated imaging system to obtain accurate and reproducible multi-spectral dermatological images is proposed. The system is made up of an integrating sphere, light emitting diodes and a generic monochromatic camera. The system can collect up to 10 different spectral bands......-spectral images provide more information than the classical thri-chromatic images and that this information is enough to segment lesions easily. These two facts together indicate the suitability of the system to collect images and to summarize and track the evolution of dermatological diseases....

  2. A Parameter-Free Dynamic Alternative to Hyper-Viscosity for Coupled Transport Equations: Application to the Simulation of 3D Squall Lines Using Spectral Elements (United States)


    Viscosity for Coupled Transport Equations: Application to the Simulation of 3D Squall Lines Using Spectral Elements 5a. CONTRACT NUMBER 5b. GRANT NUMBER 5c...the results against those obtained with a fourth-order hyper- viscosity programmed in the same code. The main conclusion that arises is that tuning...second order operator which means that fewer communications are required by VMS+DC than by a hyper- viscosity method fewer communications translate into

  3. Spectrally Adaptable Compressive Sensing Imaging System (United States)


    Compressive Sensing Imaging System” Submitted by: Gonzalo R. Arce, PI Dennis W. Prather and Javier Garcia-Frias Department of Electrical and Computer...spatio-spectral data cube. Push broom spectral imaging sensors, for instance, capture the spectral data cube by using a dispersive element as a prism...Multishot measurements can be attained by successively shifting, along the horizontal axis, the fixed coded aperture in CASSI. A novel piezo- electrical

  4. Active spectral imaging nondestructive evaluation (SINDE) camera

    Energy Technology Data Exchange (ETDEWEB)

    Simova, E.; Rochefort, P.A., E-mail: [Canadian Nuclear Laboratories, Chalk River, Ontario (Canada)


    A proof-of-concept video camera for active spectral imaging nondestructive evaluation has been demonstrated. An active multispectral imaging technique has been implemented in the visible and near infrared by using light emitting diodes with wavelengths spanning from 400 to 970 nm. This shows how the camera can be used in nondestructive evaluation to inspect surfaces and spectrally identify materials and corrosion. (author)

  5. A design of endoscopic imaging system for hyper long pipeline based on wheeled pipe robot (United States)

    Zheng, Dongtian; Tan, Haishu; Zhou, Fuqiang


    An endoscopic imaging system of hyper long pipeline is designed to acquire the inner surface image in advance for the hyper long pipeline detects measurement. The system consists of structured light sensors, pipe robots and control system. The pipe robot is in the form of wheel structure, with the sensor which is at the front of the vehicle body. The control system is at the tail of the vehicle body in the form of upper and lower computer. The sensor can be translated and scanned in three steps: walking, lifting and scanning, then the inner surface image can be acquired at a plurality of positions and different angles. The results of imaging experiments show that the system's transmission distance is longer, the acquisition angle is more diverse and the result is more comprehensive than the traditional imaging system, which lays an important foundation for later inner surface vision measurement.

  6. Nonlinear spectral imaging of biological tissues (United States)

    Palero, J. A.


    The work presented in this thesis demonstrates live high resolution 3D imaging of tissue in its native state and environment. The nonlinear interaction between focussed femtosecond light pulses and the biological tissue results in the emission of natural autofluorescence and second-harmonic signal. Because biological intrinsic emission is generally very weak and extends from the ultraviolet to the visible spectral range, a broad-spectral range and high sensitivity 3D spectral imaging system is developed. Imaging the spectral characteristics of the biological intrinsic emission reveals the structure and biochemistry of the cells and extra-cellular components. By using different methods in visualizing the spectral images, discrimination between different tissue structures is achieved without the use of any stain or fluorescent label. For instance, RGB real color spectral images of the intrinsic emission of mouse skin tissues show blue cells, green hair follicles, and purple collagen fibers. The color signature of each tissue component is directly related to its characteristic emission spectrum. The results of this study show that skin tissue nonlinear intrinsic emission is mainly due to the autofluorescence of reduced nicotinamide adenine dinucleotide (phosphate), flavins, keratin, melanin, phospholipids, elastin and collagen and nonlinear Raman scattering and second-harmonic generation in Type I collagen. In vivo time-lapse spectral imaging is implemented to study metabolic changes in epidermal cells in tissues. Optical scattering in tissues, a key factor in determining the maximum achievable imaging depth, is also investigated in this work.

  7. Unsupervised Band Selection and Segmentation in Hyper/Multispectral Images


    Martínez Usó, Adolfo


    The title of the thesis focuses the attention on hyperspectral image segmentation, that is, we want to detect salient regions in a hyperspectral image and isolate them as accurate as possible. This purpose presents two main problems: Firstly, the fact of using hyperspectral imaging not only give us a huge amount of information, but we also have to face the problem of selecting somehow the information avoiding redundancies.Secondly, the problem of segmentation strictly speaking is still a chal...


    National Aeronautics and Space Administration — This data volume contains a 17 channel spectral image cube of asteroid 951 Gaspra ranging from 0.7 to 5.2 micrometers in wavelength in cgs units of radiance. The...


    National Aeronautics and Space Administration — This data volume contains 17 channel spectral image cubes of asteroid 243 Ida ranging from 0.7 to 5.2 micrometers in wavelength in cgs units of radiance. These data...

  10. A high throughput spectral image microscopy system (United States)

    Gesley, M.; Puri, R.


    A high throughput spectral image microscopy system is configured for rapid detection of rare cells in large populations. To overcome flow cytometry rates and use of fluorophore tags, a system architecture integrates sample mechanical handling, signal processors, and optics in a non-confocal version of light absorption and scattering spectroscopic microscopy. Spectral images with native contrast do not require the use of exogeneous stain to render cells with submicron resolution. Structure may be characterized without restriction to cell clusters of differentiation.

  11. Smoothing of Fused Spectral Consistent Satellite Images

    DEFF Research Database (Denmark)

    Sveinsson, Johannes; Aanæs, Henrik; Benediktsson, Jon Atli


    Several widely used methods have been proposed for fusing high resolution panchromatic data and lower resolution multi-channel data. However, many of these methods fail to maintain spectral consistency of the fused high resolution image, which is of high importance to many of the applications based...... in a statistically meaningful way. The fusion method was called spectral consistent panshapen- ing (SC) and it was shown that spectral consistency was a direct consequence of imaging physics and hence guaranteed by the SCP. In this paper exploit this framework and investigate two smoothing methods of the fused image...... obtain by SCP. The first smoothing method is based on Markov random field (MRF) model, while the second method uses wavelet domain hidden Markov models (HMM) for smoothing of the SCP fused image....

  12. Relationship of intertidal surface sediment chlorophyll concentration to hyper-spectral reflectance and chlorophyll fluorescence

    NARCIS (Netherlands)

    Kromkamp, J.C.; Morris, E.P.; Forster, R.M.; Honeywill, C.; Hagerthey, S.; Paterson, D.M.


    Estimating biomass of microphytobenthos (MPB) on intertidal mud flats is extremely difficult due to their patchy occurrence, especially at the scale of an entire mud flat. We tested two optical approaches that can be applied in situ: spectral reflectance and chlorophyll fluorescence. These two

  13. Calibration and characterization of spectral imaging systems (United States)

    Polder, Gerrit; van der Heijden, Gerie W.


    Spectral image sensors provide images with a large umber of contiguous spectral channels per pixel. This paper describes the calibration of spectrograph based spectral imaging systems. The relation between pixel position and measured wavelength was determined using three different wavelength calibration sources. Results indicate that for spectral calibration a source with very small peaks,such as a HgAr source, is preferred to arrow band filters. A second order polynomial model gives a better fit than a linear model for the pixel to wavelength mapping. The signal to noise ratio (SNR)is determined per wavelength. In the blue part of the spectrum,the SNR was lower than in the green and red part.This is due to a decreased quantum efficiency of the CCD,a smaller transmission coefficient of the spectrograph,as well as poor performance of the illuminant. Increasing the amount of blue light,using additional Fluorescent tube with special coating increased the SNR considerably. Furthermore, the spatial and spectral resolution of the system are determined.These can be used to choose appropriate binning factors to decrease the image size without losing information.

  14. Intelligent multi-spectral IR image segmentation (United States)

    Lu, Thomas; Luong, Andrew; Heim, Stephen; Patel, Maharshi; Chen, Kang; Chao, Tien-Hsin; Chow, Edward; Torres, Gilbert


    This article presents a neural network based multi-spectral image segmentation method. A neural network is trained on the selected features of both the objects and background in the longwave (LW) Infrared (IR) images. Multiple iterations of training are performed until the accuracy of the segmentation reaches satisfactory level. The segmentation boundary of the LW image is used to segment the midwave (MW) and shortwave (SW) IR images. A second neural network detects the local discontinuities and refines the accuracy of the local boundaries. This article compares the neural network based segmentation method to the Wavelet-threshold and Grab-Cut methods. Test results have shown increased accuracy and robustness of this segmentation scheme for multi-spectral IR images.

  15. Model-based biological Raman spectral imaging. (United States)

    Shafer-Peltier, Karen E; Haka, Abigail S; Motz, Jason T; Fitzmaurice, Maryann; Dasari, Ramachandra R; Feld, Michael S


    Raman spectral imaging is a powerful tool for determining chemical information in a biological specimen. The challenge is to condense the large amount of spectral information into an easily visualized form with high information content. Researchers have applied a range of techniques, from peak-height ratios to sophisticated models, to produce interpretable Raman images. The purpose of this article is to review some of the more common imaging approaches, in particular principal components analysis, multivariate curve resolution, and Euclidean distance, as well as to present a new technique, morphological modeling. How to best extract meaningful chemical information using each imaging approach will be discussed and examples of images produced with each will be shown. Copyright 2002 Wiley-Liss, Inc.

  16. Color image encryption based on hybrid hyper-chaotic system and cellular automata (United States)

    Yaghouti Niyat, Abolfazl; Moattar, Mohammad Hossein; Niazi Torshiz, Masood


    This paper proposes an image encryption scheme based on Cellular Automata (CA). CA is a self-organizing structure with a set of cells in which each cell is updated by certain rules that are dependent on a limited number of neighboring cells. The major disadvantages of cellular automata in cryptography include limited number of reversal rules and inability to produce long sequences of states by these rules. In this paper, a non-uniform cellular automata framework is proposed to solve this problem. This proposed scheme consists of confusion and diffusion steps. In confusion step, the positions of the original image pixels are replaced by chaos mapping. Key image is created using non-uniform cellular automata and then the hyper-chaotic mapping is used to select random numbers from the image key for encryption. The main contribution of the paper is the application of hyper chaotic functions and non-uniform CA for robust key image generation. Security analysis and experimental results show that the proposed method has a very large key space and is resistive against noise and attacks. The correlation between adjacent pixels in the encrypted image is reduced and the amount of entropy is equal to 7.9991 which is very close to 8 which is ideal.

  17. [Microscopic raman spectral imaging of oily core]. (United States)

    Huang, Qiao-song; Yu, Zhao-xian; Li, Jing


    In the present paper, the authors examined some oily core by Raman spectral imaging methods. Those methods can be classified into two categories, referred to as "parallel or direct imaging" (Imaging) and "series or indirect imaging" (Mapping) techniques. The observed oily core samples which belong to siltstone that was from LONG-HU-PAO structure in SONG-LIAO basin. The samples were made from quartz (approximately 60%), feldspar (approximately 25%) and other impurity, a little recrystallized calcite (approximately 1%) was in the pore, and the argillaceous matter was distributed along the edge of a pore. The experimental work was accomplished using Renishaw MKI2000 Model Raman spectrometer including System 1000 plus filter wheel and filter set. The experimental condition is as follows: room temperature, back-scattering geometry, and excitation wavelength 514. 5 nm (Ar ion laser). In organic matter region, the microscopic Raman spectrum shows that there are two strong scattering peaks at 1 587. 2 and 1334.5 cm(-1), respectively. The former corresponds to intralayer bi-carbon-atomic stretch mode, referred to as "graphite peak"; the latter is disorder-induced feature because of the relaxation of the wave-vector selection rule resulting from finite crystal size effects, referred to as "disorder peak". In pure core substrate region, we observed a sharper peak at 462.7 cm(-1), corresponding to Raman active nonpolar optical mode of quartz crystal. On the basis of the above-mentioned experimental result, we accomplished Raman spectral imaging using mapping (indirect-imaging) procedure and imaging (direct-imaging) procedure, separately. In mapping (indirect-imaging) procedure, although the Raman spectra possess a high spectral resolution (approximately 1 cm(-1)) in every spatial dot, the restructured picture shows a low spatial resolution power (approximately 1 micrometer) because the smallest laser beam radius on the sample plane was restricted by objective lens NA. In

  18. Spectral clustering algorithms for ultrasound image segmentation. (United States)

    Archip, Neculai; Rohling, Robert; Cooperberg, Peter; Tahmasebpour, Hamid; Warfield, Simon K


    Image segmentation algorithms derived from spectral clustering analysis rely on the eigenvectors of the Laplacian of a weighted graph obtained from the image. The NCut criterion was previously used for image segmentation in supervised manner. We derive a new strategy for unsupervised image segmentation. This article describes an initial investigation to determine the suitability of such segmentation techniques for ultrasound images. The extension of the NCut technique to the unsupervised clustering is first described. The novel segmentation algorithm is then performed on simulated ultrasound images. Tests are also performed on abdominal and fetal images with the segmentation results compared to manual segmentation. Comparisons with the classical NCut algorithm are also presented. Finally, segmentation results on other types of medical images are shown.

  19. Spectrally Consistent Satellite Image Fusion with Improved Image Priors

    DEFF Research Database (Denmark)

    Nielsen, Allan Aasbjerg; Aanæs, Henrik; Jensen, Thomas B.S.


    Here an improvement to our previous framework for satellite image fusion is presented. A framework purely based on the sensor physics and on prior assumptions on the fused image. The contributions of this paper are two fold. Firstly, a method for ensuring 100% spectrally consistency is proposed......, even when more sophisticated image priors are applied. Secondly, a better image prior is introduced, via data-dependent image smoothing....

  20. Multi-spectral imaging of oxygen saturation (United States)

    Savelieva, Tatiana A.; Stratonnikov, Aleksander A.; Loschenov, Victor B.


    The system of multi-spectral imaging of oxygen saturation is an instrument that can record both spectral and spatial information about a sample. In this project, the spectral imaging technique is used for monitoring of oxygen saturation of hemoglobin in human tissues. This system can be used for monitoring spatial distribution of oxygen saturation in photodynamic therapy, surgery or sports medicine. Diffuse reflectance spectroscopy in the visible range is an effective and extensively used technique for the non-invasive study and characterization of various biological tissues. In this article, a short review of modeling techniques being currently in use for diffuse reflection from semi-infinite turbid media is presented. A simple and practical model for use with a real-time imaging system is proposed. This model is based on linear approximation of the dependence of the diffuse reflectance coefficient on relation between absorbance and reduced scattering coefficient. This dependence was obtained with the Monte Carlo simulation of photon propagation in turbid media. Spectra of the oxygenated and deoxygenated forms of hemoglobin differ mostly in the red area (520 - 600 nm) and have several characteristic points there. Thus four band-pass filters were used for multi-spectral imaging. After having measured the reflectance, the data obtained are used for fitting the concentration of oxygenated and free hemoglobin, and hemoglobin oxygen saturation.

  1. Multiple snapshot colored compressive spectral imager (United States)

    Correa, Claudia V.; Hinojosa, Carlos A.; Arce, Gonzalo R.; Arguello, Henry


    The snapshot colored compressive spectral imager (SCCSI) is a recent compressive spectral imaging (CSI) architecture that senses the spatial and spectral information of a scene in a single snapshot by means of a colored mosaic FPA detector and a dispersive element. Commonly, CSI architectures allow multiple snapshot acquisition, yielding improved reconstructions of spatially detailed and spectrally rich scenes. Each snapshot is captured employing a different coding pattern. In principle, SCCSI does not admit multiple snapshots since the pixelated tiling of optical filters is directly attached to the detector. This paper extends the concept of SCCSI to a system admitting multiple snapshot acquisition by rotating the dispersive element, so the dispersed spatio-spectral source is coded and integrated at different detector pixels in each rotation. Thus, a different set of coded projections is captured using the same optical components of the original architecture. The mathematical model of the multishot SCCSI system is presented along with several simulations. Results show that a gain up to 7 dB of peak signal-to-noise ratio is achieved when four SCCSI snapshots are compared to a single snapshot reconstruction. Furthermore, a gain up to 5 dB is obtained with respect to state-of-the-art architecture, the multishot CASSI.

  2. The spectral imaging facility: Setup characterization

    Energy Technology Data Exchange (ETDEWEB)

    De Angelis, Simone, E-mail:; De Sanctis, Maria Cristina; Manzari, Paola Olga [Institute for Space Astrophysics and Planetology, INAF-IAPS, Via Fosso del Cavaliere, 100, 00133 Rome (Italy); Ammannito, Eleonora [Institute for Space Astrophysics and Planetology, INAF-IAPS, Via Fosso del Cavaliere, 100, 00133 Rome (Italy); Department of Earth, Planetary and Space Sciences, University of California, Los Angeles, Los Angeles, California 90095-1567 (United States); Di Iorio, Tatiana [ENEA, UTMEA-TER, Rome (Italy); Liberati, Fabrizio [Opto Service SrL, Campagnano di Roma (RM) (Italy); Tarchi, Fabio; Dami, Michele; Olivieri, Monica; Pompei, Carlo [Selex ES, Campi Bisenzio (Italy); Mugnuolo, Raffaele [Italian Space Agency, ASI, Spatial Geodesy Center, Matera (Italy)


    The SPectral IMager (SPIM) facility is a laboratory visible infrared spectrometer developed to support space borne observations of rocky bodies of the solar system. Currently, this laboratory setup is used to support the DAWN mission, which is in its journey towards the asteroid 1-Ceres, and to support the 2018 Exo-Mars mission in the spectral investigation of the Martian subsurface. The main part of this setup is an imaging spectrometer that is a spare of the DAWN visible infrared spectrometer. The spectrometer has been assembled and calibrated at Selex ES and then installed in the facility developed at the INAF-IAPS laboratory in Rome. The goal of SPIM is to collect data to build spectral libraries for the interpretation of the space borne and in situ hyperspectral measurements of planetary materials. Given its very high spatial resolution combined with the imaging capability, this instrument can also help in the detailed study of minerals and rocks. In this paper, the instrument setup is first described, and then a series of test measurements, aimed to the characterization of the main subsystems, are reported. In particular, laboratory tests have been performed concerning (i) the radiation sources, (ii) the reference targets, and (iii) linearity of detector response; the instrumental imaging artifacts have also been investigated.

  3. Spectral imaging for contamination detection in food

    DEFF Research Database (Denmark)

    Carstensen, Jens Michael

    Spectral imaging is a technique with a big potential for surface chemistry mapping of heterogeneous samples. It works by making a spectrum in every pixel of an image, and this spectrum may under the right circumstances be transformed into abundance maps for chemical components. One important...... application of the technique is finding anomalies I supposedly homogeneous matter or homogeneous mixtures. This application occurs frequently in the food industry when different types of contamination are to be detected. Contaminants could be e.g. foreign matter, process-induced toxins, and microbiological...

  4. Narrow-band Imaging in the Diagnosis of Colorectal Hyper-plastic Lesions

    Directory of Open Access Journals (Sweden)

    Li Zhang


    Full Text Available Objective: To evaluate the differential diagnostic value of narrow-band imaging (NBI endoscopy and indigo carmine staining endoscopy in the diagnosis of colorectal hyper-plastic lesions. Methods: A total of 71 lesions form 57 patients were examined with conventional colonoscopy, NBI endoscopy and indigo carmine staining endoscopy to compare and analyze the lesions outlines, pit patterns (PIT and capillary patterns (CP, so as to distinguish neo-plastic and nonneo- plastic lesions and to compare with the results of pathological diagnosis. Results: The detection rate of conventional endoscopy was 91.5% (65/71, while it was 100% (71/71 under NBI and indigo carmine staining endoscopies, respectively. For the observation of lesion outlines and CP, NBI endoscopy was significantly better than conventional and indigo carmine staining endoscopies, while for the observation of PIT, NBI endoscopy was evidently better than conventional one but similar to indigo carmine staining endoscopy. The diagnostic accuracy rate, sensitivity and specificity of NBI were 91.5% (65/71, 81.8% (18/22 and 95.9% (47/49, which were not statistically significant when compared with indigo carmine staining endoscopy’s 88.7% (63/71, 77.3% (17/22 and 93.9% (46/49, but superior to those under conventional endoscopy. Conclusion: NBI endoscopy is superior to conventional colonoscopy in the diagnosis of colorectal hyper-plastic lesions, especially in the differentiation between neo-plastic and non-neo-plastic lesions. NBI has the advantage of showing the outlines changes of colorectal hyper-plastic lesions, PIT and CP clearly. In addition, it is easy and convenient in operation, so it is also an effective technique to make early diagnosis and has important functions in prevention of CRC.

  5. Hyperspectral small animal fluorescence imaging: spectral selection imaging (United States)

    Leavesley, Silas; Jiang, Yanan; Patsekin, Valery; Hall, Heidi; Vizard, Douglas; Robinson, J. Paul


    Molecular imaging is a rapidly growing area of research, fueled by needs in pharmaceutical drug-development for methods for high-throughput screening, pre-clinical and clinical screening for visualizing tumor growth and drug targeting, and a growing number of applications in the molecular biology fields. Small animal fluorescence imaging employs fluorescent probes to target molecular events in vivo, with a large number of molecular targeting probes readily available. The ease at which new targeting compounds can be developed, the short acquisition times, and the low cost (compared to microCT, MRI, or PET) makes fluorescence imaging attractive. However, small animal fluorescence imaging suffers from high optical scattering, absorption, and autofluorescence. Much of these problems can be overcome through multispectral imaging techniques, which collect images at different fluorescence emission wavelengths, followed by analysis, classification, and spectral deconvolution methods to isolate signals from fluorescence emission. We present an alternative to the current method, using hyperspectral excitation scanning (spectral selection imaging), a technique that allows excitation at any wavelength in the visible and near-infrared wavelength range. In many cases, excitation imaging may be more effective at identifying specific fluorescence signals because of the higher complexity of the fluorophore excitation spectrum. Because the excitation is filtered and not the emission, the resolution limit and image shift imposed by acousto-optic tunable filters have no effect on imager performance. We will discuss design of the imager, optimizing the imager for use in small animal fluorescence imaging, and application of spectral analysis and classification methods for identifying specific fluorescence signals.

  6. Spectral bidirectional texture function reconstruction by fusing multiple-color and spectral images. (United States)

    Dong, Wei; Shen, Hui-Liang; Du, Xin; Shao, Si-Jie; Xin, John H


    Spectral bidirectional texture function (BTF) is essential for accurate reproduction of material appearance due to its nature of conveying both spatial and spectral information. A practical issue is that the acquisition of raw spectral BTFs is time-consuming. To resolve the limitation, this paper proposes a novel framework for efficient spectral BTF acquisition and reconstruction. The framework acquires red-green-blue (RGB) BTF images and just one spectral image. The full spectral BTFs are reconstructed by fusing the RGB and spectral images based on nonnegative matrix factorization (NMF). Experimental results indicate that the accuracy of spectral reflectance reconstruction is higher than that of existing algorithms. With the reconstructed spectral BTFs, the material appearance can be reproduced with high fidelity under various illumination conditions.

  7. Combined morphological-spectral unsupervised image segmentation. (United States)

    O'Callaghan, Robert J; Bull, David R


    The goal of segmentation is to partition an image into disjoint regions, in a manner consistent with human perception of the content. For unsupervised segmentation of general images, however, there is the competing requirement not to make prior assumptions about the scene. Here, a two-stage method for general image segmentation is proposed, which is capable of processing both textured and nontextured objects in a meaningful fashion. The first stage extracts texture features from the subbands of the dual-tree complex wavelet transform. Oriented median filtering is employed, to circumvent the problem of texture feature response at step edges in the image. From the processed feature images, a perceptual gradient function is synthesised, whose watershed transform provides an initial segmentation. The second stage of the algorithm groups together these primitive regions into meaningful objects. To achieve this, a novel spectral clustering technique is proposed, which introduces the weighted mean cut cost function for graph partitioning. The ability of the proposed algorithm to generalize across a variety of image types is demonstrated.

  8. HyperART: non-invasive quantification of leaf traits using hyperspectral absorption-reflectance-transmittance imaging. (United States)

    Bergsträsser, Sergej; Fanourakis, Dimitrios; Schmittgen, Simone; Cendrero-Mateo, Maria Pilar; Jansen, Marcus; Scharr, Hanno; Rascher, Uwe


    Combined assessment of leaf reflectance and transmittance is currently limited to spot (point) measurements. This study introduces a tailor-made hyperspectral absorption-reflectance-transmittance imaging (HyperART) system, yielding a non-invasive determination of both reflectance and transmittance of the whole leaf. We addressed its applicability for analysing plant traits, i.e. assessing Cercospora beticola disease severity or leaf chlorophyll content. To test the accuracy of the obtained data, these were compared with reflectance and transmittance measurements of selected leaves acquired by the point spectroradiometer ASD FieldSpec, equipped with the FluoWat device. The working principle of the HyperART system relies on the upward redirection of transmitted and reflected light (range of 400 to 2500 nm) of a plant sample towards two line scanners. By using both the reflectance and transmittance image, an image of leaf absorption can be calculated. The comparison with the dynamically high-resolution ASD FieldSpec data showed good correlation, underlying the accuracy of the HyperART system. Our experiments showed that variation in both leaf chlorophyll content of four different crop species, due to different fertilization regimes during growth, and fungal symptoms on sugar beet leaves could be accurately estimated and monitored. The use of leaf reflectance and transmittance, as well as their sum (by which the non-absorbed radiation is calculated) obtained by the HyperART system gave considerably improved results in classification of Cercospora leaf spot disease and determination of chlorophyll content. The HyperART system offers the possibility for non-invasive and accurate mapping of leaf transmittance and absorption, significantly expanding the applicability of reflectance, based on mapping spectroscopy, in plant sciences. Therefore, the HyperART system may be readily employed for non-invasive determination of the spatio-temporal dynamics of various plant

  9. HYMOSS signal processing for pushbroom spectral imaging (United States)

    Ludwig, David E.


    The objective of the Pushbroom Spectral Imaging Program was to develop on-focal plane electronics which compensate for detector array non-uniformities. The approach taken was to implement a simple two point calibration algorithm on focal plane which allows for offset and linear gain correction. The key on focal plane features which made this technique feasible was the use of a high quality transimpedance amplifier (TIA) and an analog-to-digital converter for each detector channel. Gain compensation is accomplished by varying the feedback capacitance of the integrate and dump TIA. Offset correction is performed by storing offsets in a special on focal plane offset register and digitally subtracting the offsets from the readout data during the multiplexing operation. A custom integrated circuit was designed, fabricated, and tested on this program which proved that nonuniformity compensated, analog-to-digital converting circuits may be used to read out infrared detectors. Irvine Sensors Corporation (ISC) successfully demonstrated the following innovative on-focal-plane functions that allow for correction of detector non-uniformities. Most of the circuit functions demonstrated on this program are finding their way onto future IC's because of their impact on reduced downstream processing, increased focal plane performance, simplified focal plane control, reduced number of dewar connections, as well as the noise immunity of a digital interface dewar. The potential commercial applications for this integrated circuit are primarily in imaging systems. These imaging systems may be used for: security monitoring systems, manufacturing process monitoring, robotics, and for spectral imaging when used in analytical instrumentation.

  10. Detection limits with spectral differential imaging data (United States)

    Rameau, J.; Chauvin, G.; Lagrange, A.-M.; Maire, A.-L.; Boccaletti, A.; Bonnefoy, M.


    Context. Direct imaging of exoplanets is polluted by speckle noise that severely limits the achievable contrast. Angular and spectral differential imaging have been proposed to make use of the temporal and chromatic properties of the speckles. Both modes, associated with extreme adaptive-optics and coronagraphy, are at the core of the new generation of planet imagers SPHERE and GPI. Aims: We aim to illustrate and characterize the impact of the SDI and SDI+ADI (ASDI) data reduction on the detection of giant planets. We also propose an unbiased method to derive the detection limits from SDI/ASDI data. Methods: Observations of AB Dor B and β Pictoris made with VLT/NaCo were used to simulate and quantify the effects of SDI and ASDI. The novel method is compared to the traditional injection of artificial point sources. Results: The SDI reduction process creates a typical radial positive-negative pattern of any point-source. Its characteristics and its self-subtraction depend on the separation, but also on the spectral properties of the object. This work demonstrates that the self-subtraction cannot be reduced to a simple geometric effect. As a consequence, the detection performances of SDI observations cannot be expressed as a contrast in magnitude with the central star without the knowledge of the spectral properties of detectable companions. In addition, the residual noise cannot be converted into contrast and physical characteristics (mass, temperature) by standard calibration of flux losses. The proposed method takes the SDI bias into account to derive detection limits without the cost of massively injecting artificial sources into the data. Finally, the sensitivity of ASDI observations can be measured only with a control parameter on the algorithms that controls the minimum rotation that is necessary to build the reference image. Based on observations collected at the European Organization for Astronomical Research in the Southern Hemisphere, Chile, ESO : 60.A

  11. Spectral domain optical coherence tomography imaging of spectacular ecdysis in the royal python (Python regius). (United States)

    Tusler, Charlotte A; Maggs, David J; Kass, Philip H; Paul-Murphy, Joanne R; Schwab, Ivan R; Murphy, Christopher J


    To describe using spectral domain optical coherence tomography (SD-OCT), digital slit-lamp biomicroscopy, and external photography, changes in the ophidian cuticle, spectacle, and cornea during ecdysis. Four normal royal pythons (Python regius). Snakes were assessed once daily throughout a complete shed cycle using nasal, axial, and temporal SD-OCT images, digital slit-lamp biomicroscopy, and external photography. Spectral domain optical coherence tomography (SD-OCT) images reliably showed the spectacular cuticle and stroma, subcuticular space (SCS), cornea, anterior chamber, iris, and Schlemm's canal. When visible, the subspectacular space (SSS) was more distended peripherally than axially. Ocular surface changes throughout ecdysis were relatively conserved among snakes at all three regions imaged. From baseline (7 days following completion of a full cycle), the spectacle gradually thickened before separating into superficial cuticular and deep, hyper-reflective stromal components, thereby creating the SCS. During spectacular separation, the stroma regained original reflectivity, and multiple hyper-reflective foci (likely fragments from the cuticular-stromal interface) were noted within the SCS. The cornea was relatively unchanged in character or thickness throughout all stages of ecdysis. Slit-lamp images did not permit observation of these changes. Spectral domain optical coherence tomography (SD-OCT) provided excellent high-resolution images of the snake anterior segment, and especially the cuticle, spectacle, and cornea of manually restrained normal snakes at all stages of ecdysis and warrants investigation in snakes with anterior segment disease. The peripheral spectacle may be the preferred entry point for diagnostic or therapeutic injections into the SSS and for initiating spectacular surgery. © 2014 American College of Veterinary Ophthalmologists.

  12. Spectral-Spatial Scale Invariant Feature Transform for Hyperspectral Images. (United States)

    Al-Khafaji, Suhad Lateef; Zhou, Jun; Zia, Ali; Liew, Alan Wee-Chung


    Spectral-spatial feature extraction is an important task in hyperspectral image processing. In this paper we propose a novel method to extract distinctive invariant features from hyperspectral images for registration of hyperspectral images with different spectral conditions. Spectral condition means images are captured with different incident lights, viewing angles, or using different hyperspectral cameras. In addition, spectral condition includes images of objects with the same shape but different materials. This method, which is named Spectral-Spatial Scale Invariant Feature Transform (SS-SIFT), explores both spectral and spatial dimensions simultaneously to extract spectral and geometric transformation invariant features. Similar to the classic SIFT algorithm, SS-SIFT consists of keypoint detection and descriptor construction steps. Keypoints are extracted from spectral-spatial scale space and are detected from extrema after 3D difference of Gaussian is applied to the data cube. Two descriptors are proposed for each keypoint by exploring the distribution of spectral-spatial gradient magnitude in its local 3D neighborhood. The effectiveness of the SS-SIFT approach is validated on images collected in different light conditions, different geometric projections, and using two hyperspectral cameras with different spectral wavelength ranges and resolutions. The experimental results show that our method generates robust invariant features for spectral-spatial image matching.

  13. Hyper Suprime-Cam: System design and verification of image quality (United States)

    Miyazaki, Satoshi; Komiyama, Yutaka; Kawanomoto, Satoshi; Doi, Yoshiyuki; Furusawa, Hisanori; Hamana, Takashi; Hayashi, Yusuke; Ikeda, Hiroyuki; Kamata, Yukiko; Karoji, Hiroshi; Koike, Michitaro; Kurakami, Tomio; Miyama, Shoken; Morokuma, Tomoki; Nakata, Fumiaki; Namikawa, Kazuhito; Nakaya, Hidehiko; Nariai, Kyoji; Obuchi, Yoshiyuki; Oishi, Yukie; Okada, Norio; Okura, Yuki; Tait, Philip; Takata, Tadafumi; Tanaka, Yoko; Tanaka, Masayuki; Terai, Tsuyoshi; Tomono, Daigo; Uraguchi, Fumihiro; Usuda, Tomonori; Utsumi, Yousuke; Yamada, Yoshihiko; Yamanoi, Hitomi; Aihara, Hiroaki; Fujimori, Hiroki; Mineo, Sogo; Miyatake, Hironao; Oguri, Masamune; Uchida, Tomohisa; Tanaka, Manobu M.; Yasuda, Naoki; Takada, Masahiro; Murayama, Hitoshi; Nishizawa, Atsushi J.; Sugiyama, Naoshi; Chiba, Masashi; Futamase, Toshifumi; Wang, Shiang-Yu; Chen, Hsin-Yo; Ho, Paul T. P.; Liaw, Eric J. Y.; Chiu, Chi-Fang; Ho, Cheng-Lin; Lai, Tsang-Chih; Lee, Yao-Cheng; Jeng, Dun-Zen; Iwamura, Satoru; Armstrong, Robert; Bickerton, Steve; Bosch, James; Gunn, James E.; Lupton, Robert H.; Loomis, Craig; Price, Paul; Smith, Steward; Strauss, Michael A.; Turner, Edwin L.; Suzuki, Hisanori; Miyazaki, Yasuhito; Muramatsu, Masaharu; Yamamoto, Koei; Endo, Makoto; Ezaki, Yutaka; Ito, Noboru; Kawaguchi, Noboru; Sofuku, Satoshi; Taniike, Tomoaki; Akutsu, Kotaro; Dojo, Naoto; Kasumi, Kazuyuki; Matsuda, Toru; Imoto, Kohei; Miwa, Yoshinori; Suzuki, Masayuki; Takeshi, Kunio; Yokota, Hideo


    The Hyper Suprime-Cam (HSC) is an 870 megapixel prime focus optical imaging camera for the 8.2 m Subaru telescope. The wide-field corrector delivers sharp images of 0{^''.}2 (FWHM) in the HSC-i band over the entire 1.5° diameter field of view. The collimation of the camera with respect to the optical axis of the primary mirror is done with hexapod actuators, the mechanical accuracy of which is a few microns. Analysis of the remaining wavefront error in off-focus stellar images reveals that the collimation of the optical components meets design specifications. While there is a flexure of mechanical components, it also is within the design specification. As a result, the camera achieves its seeing-limited imaging on Maunakea during most of the time; the median seeing over several years of observing is 0.67" (FWHM) in the i band. The sensors use p-channel, fully depleted CCDs of 200 μm thickness (2048 × 4176 15 μm square pixels) and we employ 116 of them to pave the 50 cm diameter focal plane. The minimum interval between exposures is 34 s, including the time to read out arrays, to transfer data to the control computer, and to save them to the hard drive. HSC on Subaru uniquely features a combination of a large aperture, a wide field of view, sharp images and a high sensitivity especially at longer wavelengths, which makes the HSC one of the most powerful observing facilities in the world.

  14. Retinal imaging by spectral optical coherence tomography. (United States)

    Kałuzny, J J; Szkulmowska, A; Bajraszewski, T; Szkulmowski, M; Kałuzny, B J; Gorczyńska, I; Targowski, P; Wojtkowski, M


    To demonstrate applicability of high speed spectral optical coherence tomography (SOCT) method for imaging retinal pathologies in clinical conditions. SOCT was performed in 67 eyes with different macular diseases. Examinations were carried out with the prototype SOCT instrument constructed in the Institute of Physics, Nicolaus Copernicus University, Toruń, Poland. A broadband superluminescent diode was used as a light source. The disturbances of retinal layer structure concerning mainly outer segments of photoreceptors were observed in case of central serous chorioretinopathy and choroidal neovascularization in age-related macular degeneration. Large drusen were often related to significant changes of outer nuclear layer thickness and reflectivity. SOCT detects small disturbances of the retinal structure and helps to precisely determine layers involved in different pathologies.

  15. Precise acquisition and unsupervised segmentation of multi-spectral images

    DEFF Research Database (Denmark)

    Gomez, David Delgado; Clemmensen, Line Katrine Harder; Ersbøll, Bjarne Kjær


    In this work, an integrated imaging system to obtain accurate and reproducible multi-spectral images and a novel multi-spectral image segmentation algorithm are proposed. The system collects up to 20 different spectral bands within a range that vary from 395 nm to 970 nm. The system is designed...... to acquire geometrically and chromatically corrected images in homogeneous and diffuse illumination, so images can be compared over time. The proposed segmentation algorithm combines the information provided by all the spectral bands to segment the different regions of interest. Three experiments...... are conducted to show the ability of the system to acquire highly precise, reproducible and standardized multi-spectral images and to show its applicabilities in different situations....

  16. A New Multichannel Spectral Imaging Laser Scanning Confocal Microscope

    Directory of Open Access Journals (Sweden)

    Yunhai Zhang


    Full Text Available We have developed a new multichannel spectral imaging laser scanning confocal microscope for effective detection of multiple fluorescent labeling in the research of biological tissues. In this paper, the design and key technologies of the system are introduced. Representative results on confocal imaging, 3-dimensional sectioning imaging, and spectral imaging are demonstrated. The results indicated that the system is applicable to multiple fluorescent labeling in biological experiments.

  17. Evaluation of atmospheric correction procedures for ocean color data processing using hyper- and multi-spectral radiometric measurements from the Long Island Sound Coastal Observatory (United States)

    Ahmed, S.; Gilerson, A.; Harmel, T.; Hlaing, S.; Tonizzo, A.; Weidemann, A.; Arnone, R.


    In Ocean Color (OC) data processing one of the most critical steps is the atmospheric correction procedure used to separate the water leaving radiance, which contains information on water constituents, from the total radiance measured by space borne sensors, which contains atmospheric contributions. To ensure reliability of retrieved water leaving radiance values, and OC information derived from them, the quality of the atmospheric correction procedures applied needs to be assessed and validated. In this regard, the Long Island Sound Coastal Observatory (LISCO), jointly established by the City College of New York and the Naval Research Laboratory is becoming one of the key elements for OC sensors validation efforts, in part because of its capabilities for co-located hyper and multi-spectral measurements using HyperSAS and SeaPRISM radiometers respectively, with the latter being part of the NASA AERONET - OC network. Accordingly, the impact of the procedures used for atmospheric correction on the retrieval of remote sensing reflectance (Rrs) data can then be evaluated based on satellite OC data acquired from the LISCO site over the last two years. From this, the qualities of atmospheric correction procedures are assessed by performing matchup comparisons between the satellites retrieved atmospheric data and that of LISCO.

  18. Fresnel zone plate light field spectral imaging simulation (United States)

    Hallada, Francis D.; Franz, Anthony L.; Hawks, Michael R.


    Through numerical simulation, we have demonstrated a novel snapshot spectral imaging concept using binary diffractive optics. Binary diffractive optics, such as Fresnel zone plates (FZP) or photon sieves, can be used as the single optical element in a spectral imager that conducts both imaging and dispersion. In previous demonstrations of spectral imaging with diffractive optics, the detector array was physically translated along the optic axis to measure different image formation planes. In this new concept the wavelength-dependent images are constructed synthetically, by using integral photography concepts commonly applied to light field (plenoptic) cameras. Light field cameras use computational digital refocusing methods after exposure to make images at different object distances. Our concept refocuses to make images at different wavelengths instead of different object distances. The simulations in this study demonstrate this concept for an imager designed with a FZP. Monochromatic light from planar sources is propagated through the system to a measurement plane using wave optics in the Fresnel approximation. Simple images, placed at optical infinity, are illuminated by monochromatic sources and then digitally refocused to show different spectral bins. We show the formation of distinct images from different objects, illuminated by monochromatic sources in the VIS/NIR spectrum. Additionally, this concept could easily be applied to imaging in the MWIR and LWIR ranges. In conclusion, this new type of imager offers a rugged and simple optical design for snapshot spectral imaging and warrants further development.

  19. E-Waste recycling: new algorithm for hyper spectral identification; Reciclaje de chatarra electronica. Nuevo algoritmo para su clasificacion por imagenes hiperespectrales

    Energy Technology Data Exchange (ETDEWEB)

    Picon-Ruiz, A.; Echazarra-Higuet, J.; Bereciartua-Perez, A.


    Waste electrical and Electronic Equipment (WEEE) constitutes 4% of the municipal waste in Europe, being increased by 16-28% every five years. Nowadays, Europe produces 6,5 million tonnes of WEEE per year and currently 90% goes to landfill. WEEE waste is growing 3 times faster than municipal waste and this figure is expected to be increased up to 12 million tones by 2015. Applying a new technology to separate non-ferrous metal Waste from WEEE is the aim of this paper, by identifying multi-and hyper-spectral materials and inserting them in a recycling plant. This technology will overcome the shortcomings passed by current methods, which are unable to separate valuable materials very similar in colour, size or shape. For this reason, it is necessary to develop new algorithms able to distinguish among these materials and to face the timing requirements. (Author). 22 refs.

  20. Remote sensing of coccolithophore blooms in selected oceanic regions using the PhytoDOAS method applied to hyper-spectral satellite data

    Directory of Open Access Journals (Sweden)

    A. Sadeghi


    Full Text Available In this study temporal variations of coccolithophore blooms are investigated using satellite data. Eight years (from 2003 to 2010 of data of SCIAMACHY, a hyper-spectral satellite sensor on-board ENVISAT, were processed by the PhytoDOAS method to monitor the biomass of coccolithophores in three selected regions. These regions are characterized by frequent occurrence of large coccolithophore blooms. The retrieval results, shown as monthly mean time series, were compared to related satellite products, including the total surface phytoplankton, i.e. total chlorophyll a (from GlobColour merged data and the particulate inorganic carbon (from MODIS-Aqua. The inter-annual variations of the phytoplankton bloom cycles and their maximum monthly mean values have been compared in the three selected regions to the variations of the geophysical parameters: sea-surface temperature (SST, mixed-layer depth (MLD and surface wind-speed, which are known to affect phytoplankton dynamics. For each region, the anomalies and linear trends of the monitored parameters over the period of this study have been computed. The patterns of total phytoplankton biomass and specific dynamics of coccolithophore chlorophyll a in the selected regions are discussed in relation to other studies. The PhytoDOAS results are consistent with the two other ocean color products and support the reported dependencies of coccolithophore biomass dynamics on the compared geophysical variables. This suggests that PhytoDOAS is a valid method for retrieving coccolithophore biomass and for monitoring its bloom developments in the global oceans. Future applications of time series studies using the PhytoDOAS data set are proposed, also using the new upcoming generations of hyper-spectral satellite sensors with improved spatial resolution.

  1. Optimization of compressive 4D-spatio-spectral snapshot imaging (United States)

    Zhao, Xia; Feng, Weiyi; Lin, Lihua; Su, Wu; Xu, Guoqing


    In this paper, a modified 3D computational reconstruction method in the compressive 4D-spectro-volumetric snapshot imaging system is proposed for better sensing spectral information of 3D objects. In the design of the imaging system, a microlens array (MLA) is used to obtain a set of multi-view elemental images (EIs) of the 3D scenes. Then, these elemental images with one dimensional spectral information and different perspectives are captured by the coded aperture snapshot spectral imager (CASSI) which can sense the spectral data cube onto a compressive 2D measurement image. Finally, the depth images of 3D objects at arbitrary depths, like a focal stack, are computed by inversely mapping the elemental images according to geometrical optics. With the spectral estimation algorithm, the spectral information of 3D objects is also reconstructed. Using a shifted translation matrix, the contrast of the reconstruction result is further enhanced. Numerical simulation results verify the performance of the proposed method. The system can obtain both 3D spatial information and spectral data on 3D objects using only one single snapshot, which is valuable in the agricultural harvesting robots and other 3D dynamic scenes.

  2. Learning from weakly representative data and applications in spectral image analysis

    NARCIS (Netherlands)

    Dinh, C.


    Spectral imaging has been extensively applied in many fields, including agriculture, environmental monitoring, biomedical diagnostics, etc. Thanks to the advances in sensor technology, spectral imaging systems nowadays provide finer and finer spectral resolution needed to characterize the spectral


    Directory of Open Access Journals (Sweden)

    I. M. Gulis


    Full Text Available Instruments for spectral filtration of images are an important element of the systems used in remote sensing, medical diagnostics, in-process measurements. The aim of this study is analysis of the functional features and characteristics of the proposed two image monochromator versions which are based on dispersive spectral filtering. The first is based on the use of a dispersive monochromator, where collimating and camera lenses form a telescopic system, the dispersive element of which is within the intermediate image plane. The second version is based on an imaging double monochromator with dispersion subtraction by back propagation. For the telescopic system version, the spectral and spatial resolutions are estimated, the latter being limited by aberrations and diffraction from the entrance slit. The device has been numerically simulated and prototyped. It is shown that for the spectral bandwidth 10 nm (visible spectral range, the aberration-limited spot size is from 10–20 μm at the image center to about 30 μm at the image periphery for the image size 23–27 mm. The monochromator with dispersion subtraction enables one to vary the spectral resolution (up to 1 nm and higher by changing the intermediate slit width. But the distinctive feature is a significant change in the selected central wavelength over the image field. The considered designs of dispersive image monochromators look very promising due to the particular advantages over the systems based on tunable filters as regards the spectral resolution, fast tuning, and the spectral contrast. The monochromator based on a telescopic system has a simple design and a rather large image field but it also has a limited light throughput due to small aperture size. The monochromator with dispersion subtraction has higher light throughput, can provide high spectral resolution when recording a full data cube in a series of measuring acts for different dispersive element positions. 

  4. [Spectral line shift property of prism dispersive imaging spectrometer]. (United States)

    Zhang, Jun-qiang; Yan, Chang-xiang; Zheng, Yu-quan; Wu, Qing wen


    In order to study the spectral line shift property of prism-dispersive imaging spectrometer, the influencing factors and mechanisms of spectral line shift were presented, and the mathematical model based on linear optics model was established to describe the spectral line shift property. Code V API functions was used, in Matlab environment, to verify the validity of mathematical model, and the sensitivity coefficient of spectral line shift was analyzed. Results indicate that rigid body motion of optical mirror surface generated by environmental variation is the key causation of spectral line shift. When the decenter of mirror surface is no more than 0.2 mm and the tilt is less than 0.02 degrees, the value of spectral line shift of different wavelengths at different fields is equivalent, and the error is less than 0.1 pixel. Spectral line shift due to mirror rigid body motion is linear and independent, and the total shift of the spectral line is the algebraic sum of values produced by the single freedom of motion (DOF) of single mirror surface. The mathematical model based on linear optics model can be used to study the spectral line shift property of the prism-dispersive imaging spectrometer. It will provide some guidance for spectral calibration and spectral property analysis under complex work condition.

  5. Spectral unmixing techniques for optoacoustic imaging of tissue pathophysiology. (United States)

    Tzoumas, Stratis; Ntziachristos, Vasilis


    A key feature of optoacoustic imaging is the ability to illuminate tissue at multiple wavelengths and therefore record images with a spectral dimension. While optoacoustic images at single wavelengths reveal morphological features, in analogy to ultrasound imaging or X-ray imaging, spectral imaging concedes sensing of intrinsic chromophores and externally administered agents that can reveal physiological, cellular and subcellular functions. Nevertheless, identification of spectral moieties within images obtained at multiple wavelengths requires spectral unmixing techniques, which present a unique mathematical problem given the three-dimensional nature of the optoacoustic images. Herein we discuss progress with spectral unmixing techniques developed for multispectral optoacoustic tomography. We explain how different techniques are required for accurate sensing of intrinsic tissue chromophores such as oxygenated and deoxygenated haemoglobin versus extrinsically administered photo-absorbing agents and nanoparticles. Finally, we review recent developments that allow accurate quantification of blood oxygen saturation (sO2) by transforming and solving the sO2 estimation problem from the spatial to the spectral domain.This article is part of the themed issue 'Challenges for chemistry in molecular imaging'. © 2017 The Author(s).

  6. Spectral unmixing techniques for optoacoustic imaging of tissue pathophysiology (United States)

    Tzoumas, Stratis; Ntziachristos, Vasilis


    A key feature of optoacoustic imaging is the ability to illuminate tissue at multiple wavelengths and therefore record images with a spectral dimension. While optoacoustic images at single wavelengths reveal morphological features, in analogy to ultrasound imaging or X-ray imaging, spectral imaging concedes sensing of intrinsic chromophores and externally administered agents that can reveal physiological, cellular and subcellular functions. Nevertheless, identification of spectral moieties within images obtained at multiple wavelengths requires spectral unmixing techniques, which present a unique mathematical problem given the three-dimensional nature of the optoacoustic images. Herein we discuss progress with spectral unmixing techniques developed for multispectral optoacoustic tomography. We explain how different techniques are required for accurate sensing of intrinsic tissue chromophores such as oxygenated and deoxygenated haemoglobin versus extrinsically administered photo-absorbing agents and nanoparticles. Finally, we review recent developments that allow accurate quantification of blood oxygen saturation (sO2) by transforming and solving the sO2 estimation problem from the spatial to the spectral domain. This article is part of the themed issue 'Challenges for chemistry in molecular imaging'.

  7. Spectral Imaging Visualization and Tracking System Project (United States)

    National Aeronautics and Space Administration — To address the NASA Earth Observation Mission need for innovative optical tracking systems, Physical Optics Corporation (POC) proposes to develop a new Spectral...

  8. Designing a Practical System for Spectral Imaging of Skylight (United States)


    relatively inexpensive system for spectral imaging of daylight. Here we improve our simulation of the multispectral system by (1) considering the properties of optimum sensors in the presence of noise, one side effect of which is that adding more sensors may not improve the spectral...LCTF. We vary sensors’ peak sensitivities from 380 780 nm in 5 nm steps, a spectral resolution ade- quate for both colorimetry and radiometry. We

  9. Colored coded-apertures for spectral image unmixing (United States)

    Vargas, Hector M.; Arguello Fuentes, Henry


    Hyperspectral remote sensing technology provides detailed spectral information from every pixel in an image. Due to the low spatial resolution of hyperspectral image sensors, and the presence of multiple materials in a scene, each pixel can contain more than one spectral signature. Therefore, endmember extraction is used to determine the pure spectral signature of the mixed materials and its corresponding abundance map in a remotely sensed hyperspectral scene. Advanced endmember extraction algorithms have been proposed to solve this linear problem called spectral unmixing. However, such techniques require the acquisition of the complete hyperspectral data cube to perform the unmixing procedure. Researchers show that using colored coded-apertures improve the quality of reconstruction in compressive spectral imaging (CSI) systems under compressive sensing theory (CS). This work aims at developing a compressive supervised spectral unmixing scheme to estimate the endmembers and the abundance map from compressive measurements. The compressive measurements are acquired by using colored coded-apertures in a compressive spectral imaging system. Then a numerical procedure estimates the sparse vector representation in a 3D dictionary by solving a constrained sparse optimization problem. The 3D dictionary is formed by a 2-D wavelet basis and a known endmembers spectral library, where the Wavelet basis is used to exploit the spatial information. The colored coded-apertures are designed such that the sensing matrix satisfies the restricted isometry property with high probability. Simulations show that the proposed scheme attains comparable results to the full data cube unmixing technique, but using fewer measurements.

  10. Digital staining for histopathology multispectral images by the combined application of spectral enhancement and spectral transformation. (United States)

    Bautista, Pinky A; Yagi, Yukako


    In this paper we introduced a digital staining method for histopathology images captured with an n-band multispectral camera. The method consisted of two major processes: enhancement of the original spectral transmittance and the transformation of the enhanced transmittance to its target spectral configuration. Enhancement is accomplished by shifting the original transmittance with the scaled difference between the original transmittance and the transmittance estimated with m dominant principal component (PC) vectors;the m-PC vectors were determined from the transmittance samples of the background image. Transformation of the enhanced transmittance to the target spectral configuration was done using an nxn transformation matrix, which was derived by applying a least square method to the enhanced and target spectral training data samples of the different tissue components. Experimental results on the digital conversion of a hematoxylin and eosin (H&E) stained multispectral image to its Masson's trichrome stained (MT) equivalent shows the viability of the method.

  11. Upconversion based spectral imaging in 6 to 8 μm spectral regime

    DEFF Research Database (Denmark)

    Junaid, Saher; Tidemand-Lichtenberg, Peter; Pedersen, Christian


    Spectral imaging in the 6 to 8μm range has great potential for medical diagnostics. Here a novel technique based on frequency upconversion of the infrared images to the near visible for subsequent acquisition using a Si-CCD camera is investigated. The upconversion unit consists of an AgGaS2 crystal...... for the full field of view. Simulated images are created and compared with the measured images....

  12. Electro-Optic Imaging Fourier Transform Spectral Polarimeter Project (United States)

    National Aeronautics and Space Administration — Boulder Nonlinear Systems, Inc. (BNS) proposes to develop an Electro-Optic Imaging Fourier Transform Spectral Polarimeter (E-O IFTSP). The polarimetric system is...

  13. Retinex Preprocessing for Improved Multi-Spectral Image Classification (United States)

    Thompson, B.; Rahman, Z.; Park, S.


    The goal of multi-image classification is to identify and label "similar regions" within a scene. The ability to correctly classify a remotely sensed multi-image of a scene is affected by the ability of the classification process to adequately compensate for the effects of atmospheric variations and sensor anomalies. Better classification may be obtained if the multi-image is preprocessed before classification, so as to reduce the adverse effects of image formation. In this paper, we discuss the overall impact on multi-spectral image classification when the retinex image enhancement algorithm is used to preprocess multi-spectral images. The retinex is a multi-purpose image enhancement algorithm that performs dynamic range compression, reduces the dependence on lighting conditions, and generally enhances apparent spatial resolution. The retinex has been successfully applied to the enhancement of many different types of grayscale and color images. We show in this paper that retinex preprocessing improves the spatial structure of multi-spectral images and thus provides better within-class variations than would otherwise be obtained without the preprocessing. For a series of multi-spectral images obtained with diffuse and direct lighting, we show that without retinex preprocessing the class spectral signatures vary substantially with the lighting conditions. Whereas multi-dimensional clustering without preprocessing produced one-class homogeneous regions, the classification on the preprocessed images produced multi-class non-homogeneous regions. This lack of homogeneity is explained by the interaction between different agronomic treatments applied to the regions: the preprocessed images are closer to ground truth. The principle advantage that the retinex offers is that for different lighting conditions classifications derived from the retinex preprocessed images look remarkably "similar", and thus more consistent, whereas classifications derived from the original

  14. Canny Edge Detection in Cross-Spectral Fused Images

    Directory of Open Access Journals (Sweden)

    Patricia Suárez


    Full Text Available Considering that the images of different spectra provide an ample information that helps a lo in the process of identification and distinction of objects that have unique spectral signatures. In this paper, the use of cross-spectral images in the process of edge detection is evaluated. This study aims to assess the Canny edge detector with two variants. The first relates to the use of merged cross-spectral images and the second the inclusion of morphological filters. To ensure the quality of the data used in this study the GQM (Goal-Question- Metrics, framework, was applied to reduce noise and increase the entropy on images. The metrics obtained in the experiments confirm that the quantity and quality of the detected edges increases significantly after the inclusion of a morphological filter and a channel of near infrared spectrum in the merged images.

  15. Methods for spectral image analysis by exploiting spatial simplicity (United States)

    Keenan, Michael R.


    Several full-spectrum imaging techniques have been introduced in recent years that promise to provide rapid and comprehensive chemical characterization of complex samples. One of the remaining obstacles to adopting these techniques for routine use is the difficulty of reducing the vast quantities of raw spectral data to meaningful chemical information. Multivariate factor analysis techniques, such as Principal Component Analysis and Alternating Least Squares-based Multivariate Curve Resolution, have proven effective for extracting the essential chemical information from high dimensional spectral image data sets into a limited number of components that describe the spectral characteristics and spatial distributions of the chemical species comprising the sample. There are many cases, however, in which those constraints are not effective and where alternative approaches may provide new analytical insights. For many cases of practical importance, imaged samples are "simple" in the sense that they consist of relatively discrete chemical phases. That is, at any given location, only one or a few of the chemical species comprising the entire sample have non-zero concentrations. The methods of spectral image analysis of the present invention exploit this simplicity in the spatial domain to make the resulting factor models more realistic. Therefore, more physically accurate and interpretable spectral and abundance components can be extracted from spectral images that have spatially simple structure.

  16. A Subspace Approach to Spectral Quantification for MR Spectroscopic Imaging. (United States)

    Li, Yudu; Lam, Fan; Clifford, Bryan; Liang, Zhi-Pei


    To provide a new approach to spectral quantification for magnetic resonance spectroscopic imaging (MRSI), incorporating both spatial and spectral priors. A novel signal model is proposed, which represents the spectral distributions of each molecule as a subspace and the entire spectrum as a union of subspaces. Based on this model, the spectral quantification can be solved in two steps: 1) subspace estimation based on the empirical distributions of the spectral parameters estimated using spectral priors; and 2) parameter estimation for the union-of-subspaces model incorporating spatial priors. The proposed method has been evaluated using both simulated and experimental data, producing impressive results. The proposed union-of-subspaces representation of spatiospectral functions provides an effective computational framework for solving the MRSI spectral quantification problem with spatiospectral constraints. The proposed approach transforms how the MRSI spectral quantification problem is solved and enables efficient and effective use of spatiospectral priors to improve parameter estimation. The resulting algorithm is expected to be useful for a wide range of quantitative metabolic imaging studies using MRSI.

  17. Multi-spectral Image Analysis for Astaxanthin Coating Classification

    DEFF Research Database (Denmark)

    Ljungqvist, Martin Georg; Ersbøll, Bjarne Kjær; Nielsen, Michael Engelbrecht


    Industrial quality inspection using image analysis on astaxanthin coating in aquaculture feed pellets is of great importance for automatic production control. In this study multi-spectral image analysis of pellets was performed using LDA, QDA, SNV and PCA on pixel level and mean value of pixels...


    Directory of Open Access Journals (Sweden)

    H. Shen


    Full Text Available Data fusion techniques have been widely researched and applied in remote sensing field. In this paper, an integrated fusion method for remotely sensed images is presented. Differently from the existed methods, the proposed method has the performance to integrate the complementary information in multiple temporal-spatial-spectral images. In order to represent and process the images in one unified framework, two general image observation models are firstly presented, and then the maximum a posteriori (MAP framework is used to set up the fusion model. The gradient descent method is employed to solve the fused image. The efficacy of the proposed method is validated using simulated images.

  19. Demonstration of random projections applied to the retrieval problem of geophysical parameters from hyper-spectral infrared observations. (United States)

    Serio, Carmine; Masiello, Guido; Liuzzi, Giuliano


    The random projections statistical technique has been used to reduce the dimensionality of the radiance data space generated from high spectral resolution infrared observations. The mathematical inversion of the physical radiative transfer equation for geophysical parameters has been solved in this space of reduced dimensionality. The great advantage of using random projections is that they provide an unified treatment of instrument noise and forward model error, which can be comprehensively modeled with a single variance term. The result is a novel retrieval approach, which combines computational efficiency to possibly improved accuracy of the retrieval products. The novel approach has been demonstrated through application to the Infrared Atmospheric Sounding Interferometer. We have found that state-of-the-art spectroscopy and related line-mixing treatment for the ν2CO2 absorption band, i.e., the fundamental band for temperature retrieval, show an excellent consistency with satellite observations.

  20. Probability of correct reconstruction in compressive spectral imaging

    Directory of Open Access Journals (Sweden)

    Samuel Eduardo Pinilla


    Full Text Available Coded Aperture Snapshot Spectral Imaging (CASSI systems capture the 3-dimensional (3D spatio-spectral information of a scene using a set of 2-dimensional (2D random coded Focal Plane Array (FPA measurements. A compressed sensing reconstruction algorithm is then used to recover the underlying spatio-spectral 3D data cube. The quality of the reconstructed spectral images depends exclusively on the CASSI sensing matrix, which is determined by the statistical structure of the coded apertures. The Restricted Isometry Property (RIP of the CASSI sensing matrix is used to determine the probability of correct image reconstruction and provides guidelines for the minimum number of FPA measurement shots needed for image reconstruction. Further, the RIP can be used to determine the optimal structure of the coded projections in CASSI. This article describes the CASSI optical architecture and develops the RIP for the sensing matrix in this system. Simulations show the higher quality of spectral image reconstructions when the RIP property is satisfied. Simulations also illustrate the higher performance of the optimal structured projections in CASSI.

  1. Computational Fluid Dynamics (CFD) Image of Hyper-X Research Vehicle at Mach 7 with Engine Operating (United States)


    This computational fluid dynamics (CFD) image shows the Hyper-X vehicle at a Mach 7 test condition with the engine operating. The solution includes both internal (scramjet engine) and external flow fields, including the interaction between the engine exhaust and vehicle aerodynamics. The image illustrates surface heat transfer on the vehicle surface (red is highest heating) and flowfield contours at local Mach number. The last contour illustrates the engine exhaust plume shape. This solution approach is one method of predicting the vehicle performance, and the best method for determination of vehicle structural, pressure and thermal design loads. The Hyper-X program is an ambitious series of experimental flights to expand the boundaries of high-speed aeronautics and develop new technologies for space access. When the first of three aircraft flies, it will be the first time a non-rocket engine has powered a vehicle in flight at hypersonic speeds--speeds above Mach 5, equivalent to about one mile per second or approximately 3,600 miles per hour at sea level. Hyper-X, the flight vehicle for which is designated as X-43A, is an experimental flight-research program seeking to demonstrate airframe-integrated, 'air-breathing' engine technologies that promise to increase payload capacity for future vehicles, including hypersonic aircraft (faster than Mach 5) and reusable space launchers. This multiyear program is currently underway at NASA Dryden Flight Research Center, Edwards, California. The Hyper-X schedule calls for its first flight later this year (2000). Hyper-X is a joint program, with Dryden sharing responsibility with NASA's Langley Research Center, Hampton, Virginia. Dryden's primary role is to fly three unpiloted X-43A research vehicles to validate engine technologies and hypersonic design tools as well as the hypersonic test facility at Langley. Langley manages the program and leads the technology development effort. The Hyper-X Program seeks to significantly

  2. Imaging Cellular Dynamics with Spectral Relaxation Imaging Microscopy: Distinct Spectral Dynamics in Golgi Membranes of Living Cells. (United States)

    Lajevardipour, Alireza; Chon, James W M; Chattopadhyay, Amitabha; Clayton, Andrew H A


    Spectral relaxation from fluorescent probes is a useful technique for determining the dynamics of condensed phases. To this end, we have developed a method based on wide-field spectral fluorescence lifetime imaging microscopy to extract spectral relaxation correlation times of fluorescent probes in living cells. We show that measurement of the phase and modulation of fluorescence from two wavelengths permit the identification and determination of excited state lifetimes and spectral relaxation correlation times at a single modulation frequency. For NBD fluorescence in glycerol/water mixtures, the spectral relaxation correlation time determined by our approach exhibited good agreement with published dielectric relaxation measurements. We applied this method to determine the spectral relaxation dynamics in membranes of living cells. Measurements of the Golgi-specific C6-NBD-ceramide probe in living HeLa cells revealed sub-nanosecond spectral dynamics in the intracellular Golgi membrane and slower nanosecond spectral dynamics in the extracellular plasma membrane. We interpret the distinct spectral dynamics as a result of structural plasticity of the Golgi membrane relative to more rigid plasma membranes. To the best of our knowledge, these results constitute one of the first measurements of Golgi rotational dynamics.

  3. Imaging Cellular Dynamics with Spectral Relaxation Imaging Microscopy: Distinct Spectral Dynamics in Golgi Membranes of Living Cells (United States)

    Lajevardipour, Alireza; Chon, James W. M.; Chattopadhyay, Amitabha; Clayton, Andrew H. A.


    Spectral relaxation from fluorescent probes is a useful technique for determining the dynamics of condensed phases. To this end, we have developed a method based on wide-field spectral fluorescence lifetime imaging microscopy to extract spectral relaxation correlation times of fluorescent probes in living cells. We show that measurement of the phase and modulation of fluorescence from two wavelengths permit the identification and determination of excited state lifetimes and spectral relaxation correlation times at a single modulation frequency. For NBD fluorescence in glycerol/water mixtures, the spectral relaxation correlation time determined by our approach exhibited good agreement with published dielectric relaxation measurements. We applied this method to determine the spectral relaxation dynamics in membranes of living cells. Measurements of the Golgi-specific C6-NBD-ceramide probe in living HeLa cells revealed sub-nanosecond spectral dynamics in the intracellular Golgi membrane and slower nanosecond spectral dynamics in the extracellular plasma membrane. We interpret the distinct spectral dynamics as a result of structural plasticity of the Golgi membrane relative to more rigid plasma membranes. To the best of our knowledge, these results constitute one of the first measurements of Golgi rotational dynamics.

  4. Fluvial particle characterization using artificial neural network and spectral image processing (United States)

    Shrestha, Bim Prasad; Gautam, Bijaya; Nagata, Masateru


    Sand, chemical waste, microbes and other solid materials flowing with the water bodies are of great significance to us as they cause substantial impact to different sectors including drinking water management, hydropower generation, irrigation, aquatic life preservation and various other socio-ecological factors. Such particles can't completely be avoided due to the high cost of construction and maintenance of the waste-treatment methods. A detailed understanding of solid particles in surface water system can have benefit in effective, economic, environmental and social management of water resources. This paper describes an automated system of fluvial particle characterization based on spectral image processing that lead to the development of devices for monitoring flowing particles in river. Previous research in coherent field has shown that it is possible to automatically classify shapes and sizes of solid particles ranging from 300-400 μm using artificial neural networks (ANN) and image processing. Computer facilitated with hyper spectral and multi spectral images using ANN can further classify fluvial materials into organic, inorganic, biodegradable, bio non degradable and microbes. This makes the method attractive for real time monitoring of particles, sand and microorganism in water bodies at strategic locations. Continuous monitoring can be used to determine the effect of socio-economic activities in upstream rivers, or to monitor solid waste disposal from treatment plants and industries or to monitor erosive characteristic of sand and its contribution to degradation of efficiency of hydropower plant or to identify microorganism, calculate their population and study the impact of their presence. Such system can also be used to characterize fluvial particles for planning effective utilization of water resources in micro-mega hydropower plant, irrigation, aquatic life preservation etc.

  5. Hyper-Spectral Imager in visible and near-infrared band for lunar ...

    Indian Academy of Sciences (India)

    planned for India's Chandrayaan-1 satellite for mapping the lunar surface along with other ima- ging payloads. The uniqueness of this instrument will be its capability of ... interconnecting harness. The collecting optics is designed as refractive, tele-centric with five elements lens assembly to cover a circular field of view of ± ...

  6. Research on hyperspectral dynamic scene and image sequence simulation (United States)

    Sun, Dandan; Gao, Jiaobo; Sun, Kefeng; Hu, Yu; Li, Yu; Xie, Junhu; Zhang, Lei


    This paper presents a simulation method of hyper-spectral dynamic scene and image sequence for hyper-spectral equipment evaluation and target detection algorithm. Because of high spectral resolution, strong band continuity, anti-interference and other advantages, in recent years, hyper-spectral imaging technology has been rapidly developed and is widely used in many areas such as optoelectronic target detection, military defense and remote sensing systems. Digital imaging simulation, as a crucial part of hardware in loop simulation, can be applied to testing and evaluation hyper-spectral imaging equipment with lower development cost and shorter development period. Meanwhile, visual simulation can produce a lot of original image data under various conditions for hyper-spectral image feature extraction and classification algorithm. Based on radiation physic model and material characteristic parameters this paper proposes a generation method of digital scene. By building multiple sensor models under different bands and different bandwidths, hyper-spectral scenes in visible, MWIR, LWIR band, with spectral resolution 0.01μm, 0.05μm and 0.1μm have been simulated in this paper. The final dynamic scenes have high real-time and realistic, with frequency up to 100 HZ. By means of saving all the scene gray data in the same viewpoint image sequence is obtained. The analysis results show whether in the infrared band or the visible band, the grayscale variations of simulated hyper-spectral images are consistent with the theoretical analysis results.

  7. Design of a Novel Spectral Albedometer for Validating the MODerate Resolution Imaging Spectroradiometer Spectral Albedo Product

    Directory of Open Access Journals (Sweden)

    Hongmin Zhou


    Full Text Available Land surface shortwave broadband albedo is a key parameter in general circulation models and surface energy budget models. Multispectral satellite data are typically used to generate broadband albedo products in a three-step process: atmospheric correction, for converting the top-of-atmosphere observations to surface directional reflectance; angular modeling, for converting the surface directional reflectance to spectral albedo of each individual band; and finally, narrowband-to-broadband conversion, for transforming the spectral albedos to broadband albedos. Spectroradiometers can be used for validating surface directional reflectance products and pyranometers or broadband albedometers, for validating broadband albedo products, but spectral albedo products are rarely validated using ground measurements. In this study, we designed a new type of albedometer that can measure spectral albedos. It consists of multiple interference filters and a silicon detector, for measuring irradiance from 400–1100 nm. The linearity of the sensors is 99%, and the designed albedometer exhibits consistency up to 0.993, with a widely-used commercial instrument. A field experiment for measuring spectral albedo of grassland using this new albedometer was conducted in Yudaokou, China and the measurements are used for validating the MODerate Resolution Imaging Spectroradiometer (MODIS spectral albedos. The results show that the biases of the MODIS spectral albedos of the first four bands are −0.0094, 0.0065, 0.0159, and −0.0001, respectively. This new instrument provides an effective technique for validating spectral albedos of any satellite sensor in this spectral range, which is critical for improving satellite broadband albedo products.

  8. Nonlinear spectral imaging of biological tissues

    NARCIS (Netherlands)

    Palero, J.A.


    The work presented in this thesis demonstrates live high resolution 3D imaging of tissue in its native state and environment. The nonlinear interaction between focussed femtosecond light pulses and the biological tissue results in the emission of natural autofluorescence and second-harmonic signal.

  9. Image completion by diffusion maps and spectral relaxation. (United States)

    Gepshtein, Shai; Keller, Yosi


    We present a framework for image inpainting that utilizes the diffusion framework approach to spectral dimensionality reduction. We show that on formulating the inpainting problem in the embedding domain, the domain to be inpainted is smoother in general, particularly for the textured images. Thus, the textured images can be inpainted through simple exemplar-based and variational methods. We discuss the properties of the induced smoothness and relate it to the underlying assumptions used in contemporary inpainting schemes. As the diffusion embedding is nonlinear and noninvertible, we propose a novel computational approach to approximate the inverse mapping from the inpainted embedding space to the image domain. We formulate the mapping as a discrete optimization problem, solved through spectral relaxation. The effectiveness of the presented method is exemplified by inpainting real images, where it is shown to compare favorably with contemporary state-of-the-art schemes.

  10. Differential spectral imaging with gold nanorod light scattering labels (United States)

    Qiu, Le; Vitkin, Edward; Guo, Lianyu; Hanlon, Eugene B.; Itzkan, Irving; Perelman, Lev T.


    Gold nanorods have the potential to be employed as extremely bright molecular marker labels. However, samples containing a large number of gold nanorods usually exhibit relatively wide spectral lines. This linewidth limits the use of the nanorods since it would be rather difficult to image several types of nanorod markers simultaneously. We measured native scattering spectra of single gold nanorods with the CLASS microscope and found that single gold nanorods have a narrow spectrum as predicted by the theory. That suggests that nanorod-based molecular markers with controlled narrow aspect ratios should provide spectral lines sufficiently narrow for effective biomedical imaging.

  11. Miniaturized spectral imaging for environment surveillance based on UAV platform (United States)

    Liu, Shuyang; Zhang, Chen; Zhang, Yunhao; Wang, Tianhe; Zhao, Anna; Zhou, Tao; Jia, Xiaodong


    Spectral imaging is a technique which enables the ability of detecting the target by un-contact measurement with both imaging and spectral feature in every pixel inside the image. In this way, spectral imaging device is able to collect more detailed information than traditional RGB camera and hence classify the objects into a more precise category. Environment surveillance is a vital step in the environment protection in the terms of advance warning, pollution area measurement, pollution identification, emergency response and response effectiveness evaluation. In this case, a measurement with a large surveillance area and the capacity of recognizing the target object will be preferred in this application especially for the country with large land area such as China. In this paper, a solution based on the miniaturized spectral imaging system is proposed and the practical experiment has been performed. The result shows that the proposed system is able to be installed in a small UAV and work in an altitude up to 1.7 km.


    Directory of Open Access Journals (Sweden)

    T. Hakala


    Full Text Available Rapidly developing unmanned aerial vehicles (UAV have provided the remote sensing community with a new rapidly deployable tool for small area monitoring. The progress of small payload UAVs has introduced greater demand for light weight aerial payloads. For applications requiring aerial images, a simple consumer camera provides acceptable data. For applications requiring more detailed spectral information about the surface, a new Fabry-Perot interferometer based spectral imaging technology has been developed. This new technology produces tens of successive images of the scene at different wavelength bands in very short time. These images can be assembled in spectral data cubes with stereoscopic overlaps. On field the weather conditions vary and the UAV operator often has to decide between flight in sub optimal conditions and no flight. Our objective was to investigate methods for quantitative radiometric processing of images taken under varying illumination conditions, thus expanding the range of weather conditions during which successful imaging flights can be made. A new method that is based on insitu measurement of irradiance either in UAV platform or in ground was developed. We tested the methods in a precision agriculture application using realistic data collected in difficult illumination conditions. Internal homogeneity of the original image data (average coefficient of variation in overlapping images was 0.14–0.18. In the corrected data, the homogeneity was 0.10–0.12 with a correction based on broadband irradiance measured in UAV, 0.07–0.09 with a correction based on spectral irradiance measurement on ground, and 0.05–0.08 with a radiometric block adjustment based on image data. Our results were very promising, indicating that quantitative UAV based remote sensing could be operational in diverse conditions, which is prerequisite for many environmental remote sensing applications.

  13. Kernel based subspace projection of near infrared hyperspectral images of maize kernels

    DEFF Research Database (Denmark)

    Larsen, Rasmus; Arngren, Morten; Hansen, Per Waaben


    In this paper we present an exploratory analysis of hyper- spectral 900-1700 nm images of maize kernels. The imaging device is a line scanning hyper spectral camera using a broadband NIR illumi- nation. In order to explore the hyperspectral data we compare a series of subspace projection methods...

  14. Conjugate Etalon Spectral Imager (CESI) & Scanning Etalon Methane Mapper (SEMM) Project (United States)

    National Aeronautics and Space Administration — The Conjugate Etalon Spectral Imaging (CESI) concept enables the development of miniature instruments with high spectral resolution, suitable for LEO missions aboard...

  15. AMARSI: Aerosol modeling and retrieval from multi-spectral imagers

    NARCIS (Netherlands)

    Leeuw, G. de; Curier, R.L.; Staroverova, A.; Kokhanovsky, A.; Hoyningen-Huene, W. van; Rozanov, V.V.; Burrows, J.P.; Hesselmans, G.; Gale, L.; Bouvet, M.


    The AMARSI project aims at the development and validation of aerosol retrieval algorithms over ocean. One algorithm will be developed for application with data from the Multi Spectral Imager (MSI) on EarthCARE. A second algorithm will be developed using the combined information from AATSR and MERIS,

  16. Tomato sorting using independent component analysis on spectral images

    NARCIS (Netherlands)

    Polder, G.; Heijden, van der G.W.A.M.; Young, I.T.


    Independent Component Analysis is one of the most widely used methods for blind source separation. In this paper we use this technique to estimate the most important compounds which play a role in the ripening of tomatoes. Spectral images of tomatoes were analyzed. Two main independent components

  17. Spatial and spectral imaging of LMA photonic crystal fiber amplifiers

    DEFF Research Database (Denmark)

    Laurila, Marko; Lægsgaard, Jesper; Alkeskjold, Thomas Tanggaard


    We demonstrate modal characterization using spatial and spectral resolved (S2) imaging, on an Ytterbium-doped large-mode-area photonic crystal fiber (PCF) amplifier and compare results with conventional cut-off methods. We apply numerical simulations and step-index fiber experiments to calibrate...

  18. Spatial, Temporal and Spectral Satellite Image Fusion via Sparse Representation (United States)

    Song, Huihui

    Remote sensing provides good measurements for monitoring and further analyzing the climate change, dynamics of ecosystem, and human activities in global or regional scales. Over the past two decades, the number of launched satellite sensors has been increasing with the development of aerospace technologies and the growing requirements on remote sensing data in a vast amount of application fields. However, a key technological challenge confronting these sensors is that they tradeoff between spatial resolution and other properties, including temporal resolution, spectral resolution, swath width, etc., due to the limitations of hardware technology and budget constraints. To increase the spatial resolution of data with other good properties, one possible cost-effective solution is to explore data integration methods that can fuse multi-resolution data from multiple sensors, thereby enhancing the application capabilities of available remote sensing data. In this thesis, we propose to fuse the spatial resolution with temporal resolution and spectral resolution, respectively, based on sparse representation theory. Taking the study case of Landsat ETM+ (with spatial resolution of 30m and temporal resolution of 16 days) and MODIS (with spatial resolution of 250m ~ 1km and daily temporal resolution) reflectance, we propose two spatial-temporal fusion methods to combine the fine spatial information of Landsat image and the daily temporal resolution of MODIS image. Motivated by that the images from these two sensors are comparable on corresponding bands, we propose to link their spatial information on available Landsat- MODIS image pair (captured on prior date) and then predict the Landsat image from the MODIS counterpart on prediction date. To well-learn the spatial details from the prior images, we use a redundant dictionary to extract the basic representation atoms for both Landsat and MODIS images based on sparse representation. Under the scenario of two prior Landsat

  19. A search algorithm to meta-optimize the parameters for an extended Kalman filter to improve classification on hyper-temporal images

    CSIR Research Space (South Africa)

    Salmon, P


    Full Text Available -1 IEEE International Geoscience and Remote Sensing Symposium, Munich, Germany, 22-27 July 2012 A search algorithm to meta-optimize the parameters for an extended Kalman filter to improve classification on hyper-temporal images yzB.P. Salmon, yz...

  20. Spies - Spectral Polarimetric Imager For The Energetic Sun (United States)

    Lin, Haosheng; Jaeggli, S.


    Spectropolarimetric observation with uncompromised spatial, spectral, and temporal resolution simulatneously over a substantial 2D field and multiple spectral lines is the key to the resolution of many important questions in modern solar physics. While 2D imaging spectroscopy based on fiber optics integral field unit and image slicer has a long history nighttime astronomy, adaptation for solar observation occured only recently. This paper will present preliminary results of magnetic field observation in the HeI 1083 nm and FeI 1565 nm lines obtained with SPIES --- a true imaging spectropolarimeter based on a large format (64 x 32 fibers input array) fiber-optic array optimized for the study of evolution of magnetic and thermodynamic properties of energetic and dynamic phenomena of the sun. We will also discuss considerations for the use of fiber-optic array for solar spectropolarimetric applications, as well as the design of SPIES.

  1. Room temperature mid-IR single photon spectral imaging

    DEFF Research Database (Denmark)

    Dam, Jeppe Seidelin; Tidemand-Lichtenberg, Peter; Pedersen, Christian


    modern Quantum cascade lasers have evolved as ideal coherent mid-IR excitation sources, simple, low noise, room temperature detectors and imaging systems still lag behind. We address this need presenting a novel, field-deployable, upconversion system for sensitive, 2-D, mid-IR spectral imaging. Measured...... room temperature dark noise is 0.2 photons/spatial element/second, which is a billion times below the dark noise level of cryogenically cooled InSb cameras. Single photon imaging and up to 200 x 100 spatial elements resolution is obtained reaching record high continuous wave quantum efficiency of about...

  2. Multiphoton autofluorescence spectral analysis for fungus imaging and identification (United States)

    Lin, Sung-Jan; Tan, Hsin-Yuan; Kuo, Chien-Jui; Wu, Ruei-Jr; Wang, Shiou-Han; Chen, Wei-Liang; Jee, Shiou-Hwa; Dong, Chen-Yuan


    We performed multiphoton imaging on fungi of medical significance. Fungal hyphae and spores of Aspergillus flavus, Micosporum gypseum, Micosoprum canis, Trichophyton rubrum, and Trichophyton tonsurans were found to be strongly autofluorescent but generate less prominent second harmonic signal. The cell wall and septum of fungal hyphae can be easily identified by autofluorescence imaging. We found that fungi of various species have distinct autofluorescence characteristics. Our result shows that the combination of multiphoton imaging and spectral analysis can be used to visualize and identify fungal species. This approach may be developed into an effective diagnostic tool for fungal identification.

  3. Spectral analysis of mammographic images using a multitaper method

    Energy Technology Data Exchange (ETDEWEB)

    Wu Gang; Mainprize, James G.; Yaffe, Martin J. [Department of Medical Biophysics, University of Toronto (Canada); Imaging Research, Sunnybrook Health Sciences Centre, S636, 2075 Bayview Avenue, Toronto, Ontario M4N 3M5 (Canada)


    Purpose: Power spectral analysis in radiographic images is conventionally performed using a windowed overlapping averaging periodogram. This study describes an alternative approach using a multitaper technique and compares its performance with that of the standard method. This tool will be valuable in power spectrum estimation of images, whose content deviates significantly from uniform white noise. The performance of the multitaper approach will be evaluated in terms of spectral stability, variance reduction, bias, and frequency precision. The ultimate goal is the development of a useful tool for image quality assurance. Methods: A multitaper approach uses successive data windows of increasing order. This mitigates spectral leakage allowing one to calculate a reduced-variance power spectrum. The multitaper approach will be compared with the conventional power spectrum method in several typical situations, including the noise power spectra (NPS) measurements of simulated projection images of a uniform phantom, NPS measurement of real detector images of a uniform phantom for two clinical digital mammography systems, and the estimation of the anatomic noise in mammographic images (simulated images and clinical mammograms). Results: Examination of spectrum variance versus frequency resolution and bias indicates that the multitaper approach is superior to the conventional single taper methods in the prevention of spectrum leakage and variance reduction. More than four times finer frequency precision can be achieved with equivalent or less variance and bias. Conclusions: Without any shortening of the image data length, the bias is smaller and the frequency resolution is higher with the multitaper method, and the need to compromise in the choice of regions of interest size to balance between the reduction of variance and the loss of frequency resolution is largely eliminated.

  4. Spectral analysis of mammographic images using a multitaper method. (United States)

    Wu, Gang; Mainprize, James G; Yaffe, Martin J


    Power spectral analysis in radiographic images is conventionally performed using a windowed overlapping averaging periodogram. This study describes an alternative approach using a multitaper technique and compares its performance with that of the standard method. This tool will be valuable in power spectrum estimation of images, whose content deviates significantly from uniform white noise. The performance of the multitaper approach will be evaluated in terms of spectral stability, variance reduction, bias, and frequency precision. The ultimate goal is the development of a useful tool for image quality assurance. A multitaper approach uses successive data windows of increasing order. This mitigates spectral leakage allowing one to calculate a reduced-variance power spectrum. The multitaper approach will be compared with the conventional power spectrum method in several typical situations, including the noise power spectra (NPS) measurements of simulated projection images of a uniform phantom, NPS measurement of real detector images of a uniform phantom for two clinical digital mammography systems, and the estimation of the anatomic noise in mammographic images (simulated images and clinical mammograms). Examination of spectrum variance versus frequency resolution and bias indicates that the multitaper approach is superior to the conventional single taper methods in the prevention of spectrum leakage and variance reduction. More than four times finer frequency precision can be achieved with equivalent or less variance and bias. Without any shortening of the image data length, the bias is smaller and the frequency resolution is higher with the multitaper method, and the need to compromise in the choice of regions of interest size to balance between the reduction of variance and the loss of frequency resolution is largely eliminated.

  5. Room temperature mid-IR single photon spectral imaging

    CERN Document Server

    Dam, Jeppe Seidelin; Tidemand-Lichtenberg, Peter


    Spectral imaging and detection of mid-infrared (mid-IR) wavelengths are emerging as an enabling technology of great technical and scientific interest; primarily because important chemical compounds display unique and strong mid-IR spectral fingerprints revealing valuable chemical information. While modern Quantum cascade lasers have evolved as ideal coherent mid-IR excitation sources, simple, low noise, room temperature detectors and imaging systems still lag behind. We address this need presenting a novel, field-deployable, upconversion system for sensitive, 2-D, mid-IR spectral imaging. Measured room temperature dark noise is 0.2 photons/spatial element/second, which is a billion times below the dark noise level of cryogenically cooled InSb cameras. Single photon imaging and up to 200 x 100 spatial elements resolution is obtained reaching record high continuous wave quantum efficiency of about 20 % for polarized incoherent light at 3 \\mum. The proposed method is relevant for existing and new mid-IR applicat...

  6. Snapshot Spectral and Color Imaging Using a Regular Digital Camera with a Monochromatic Image Sensor (United States)

    Hauser, J.; Zheludev, V. A.; Golub, M. A.; Averbuch, A.; Nathan, M.; Inbar, O.; Neittaanmäki, P.; Pölönen, I.


    Spectral imaging (SI) refers to the acquisition of the three-dimensional (3D) spectral cube of spatial and spectral data of a source object at a limited number of wavelengths in a given wavelength range. Snapshot spectral imaging (SSI) refers to the instantaneous acquisition (in a single shot) of the spectral cube, a process suitable for fast changing objects. Known SSI devices exhibit large total track length (TTL), weight and production costs and relatively low optical throughput. We present a simple SSI camera based on a regular digital camera with (i) an added diffusing and dispersing phase-only static optical element at the entrance pupil (diffuser) and (ii) tailored compressed sensing (CS) methods for digital processing of the diffused and dispersed (DD) image recorded on the image sensor. The diffuser is designed to mix the spectral cube data spectrally and spatially and thus to enable convergence in its reconstruction by CS-based algorithms. In addition to performing SSI, this SSI camera is capable to perform color imaging using a monochromatic or gray-scale image sensor without color filter arrays.


    Directory of Open Access Journals (Sweden)

    J. Hauser


    Full Text Available Spectral imaging (SI refers to the acquisition of the three-dimensional (3D spectral cube of spatial and spectral data of a source object at a limited number of wavelengths in a given wavelength range. Snapshot spectral imaging (SSI refers to the instantaneous acquisition (in a single shot of the spectral cube, a process suitable for fast changing objects. Known SSI devices exhibit large total track length (TTL, weight and production costs and relatively low optical throughput. We present a simple SSI camera based on a regular digital camera with (i an added diffusing and dispersing phase-only static optical element at the entrance pupil (diffuser and (ii tailored compressed sensing (CS methods for digital processing of the diffused and dispersed (DD image recorded on the image sensor. The diffuser is designed to mix the spectral cube data spectrally and spatially and thus to enable convergence in its reconstruction by CS-based algorithms. In addition to performing SSI, this SSI camera is capable to perform color imaging using a monochromatic or gray-scale image sensor without color filter arrays.

  8. Cloud-based processing of multi-spectral imaging data (United States)

    Bernat, Amir S.; Bolton, Frank J.; Weiser, Reuven; Levitz, David


    Multispectral imaging holds great promise as a non-contact tool for the assessment of tissue composition. Performing multi - spectral imaging on a hand held mobile device would allow to bring this technology and with it knowledge to low resource settings to provide a state of the art classification of tissue health. This modality however produces considerably larger data sets than white light imaging and requires preliminary image analysis for it to be used. The data then needs to be analyzed and logged, while not requiring too much of the system resource or a long computation time and battery use by the end point device. Cloud environments were designed to allow offloading of those problems by allowing end point devices (smartphones) to offload computationally hard tasks. For this end we present a method where the a hand held device based around a smartphone captures a multi - spectral dataset in a movie file format (mp4) and compare it to other image format in size, noise and correctness. We present the cloud configuration used for segmenting images to frames where they can later be used for further analysis.

  9. Noninvasive dosimetry and monitoring of TTT using spectral imaging (United States)

    Schuele, G.; Molnar, F. E.; Yellachich, D.; Vitkin, E.; Perelman, L. T.; Palanker, D.


    Transpupillary thermo therapy (TTT) is a slow (60 seconds) photothermal treatment of the fundus with a near-infrared (780-810nm) laser irradiating a large spot (0.5- 1. mm) on the retina. Due to high variability in ocular tissue properties and the lack of immediately observable outcome of the therapy, a real-time dosimetry is highly desirable. We found that fundus spectroscopy and spectrally-resolved imaging allow for non-invasive real-time monitoring and dosimetry of TTT. A 795nm laser was applied in rabbit eyes for 60 seconds using a 0.86mm retinal spot diameter. The fundus was illuminated with a broadband polarized light, and its reflectance spectra were measured in parallel and cross-polarizations. The fundus was also imaged in selected spectral domains. At irradiances that do not create ophthalmoscopically visible lesions the fundus reflectance increases at the wavelengths corresponding to absorption of the oxygenated blood indicating the reduced concentration of blood in the choroid. Vasoconstrictive response of the choroidal and retinal vasculature during TTT was also directly observed using spectrally-resolved imaging. At irradiances that produce ophthalmoscopically visible lesions a rapid reduction of the fundus reflectance was observed within the first 5-10 seconds of the exposure even when the visible lesions developed only by the end of the 60 second exposure. No visible lesions were produced where the laser was terminated after detection of the reduced scattering but prior to appearance of the enhanced scattering.

  10. Wavelength optimization for quantitative spectral imaging of breast tumor margins.

    Directory of Open Access Journals (Sweden)

    Justin Y Lo

    Full Text Available A wavelength selection method that combines an inverse Monte Carlo model of reflectance and a genetic algorithm for global optimization was developed for the application of spectral imaging of breast tumor margins. The selection of wavelengths impacts system design in cost, size, and accuracy of tissue quantitation. The minimum number of wavelengths required for the accurate quantitation of tissue optical properties is 8, with diminishing gains for additional wavelengths. The resulting wavelength choices for the specific probe geometry used for the breast tumor margin spectral imaging application were tested in an independent pathology-confirmed ex vivo breast tissue data set and in tissue-mimicking phantoms. In breast tissue, the optical endpoints (hemoglobin, β-carotene, and scattering that provide the contrast between normal and malignant tissue specimens are extracted with the optimized 8-wavelength set with <9% error compared to the full spectrum (450-600 nm. A multi-absorber liquid phantom study was also performed to show the improved extraction accuracy with optimization and without optimization. This technique for selecting wavelengths can be used for designing spectral imaging systems for other clinical applications.


    Directory of Open Access Journals (Sweden)

    S. Livens


    Full Text Available Imaging with a conventional frame camera from a moving remotely piloted aircraft system (RPAS is by design very inefficient. Less than 1 % of the flying time is used for collecting light. This unused potential can be utilized by an innovative imaging concept, the spatio-spectral camera. The core of the camera is a frame sensor with a large number of hyperspectral filters arranged on the sensor in stepwise lines. It combines the advantages of frame cameras with those of pushbroom cameras. By acquiring images in rapid succession, such a camera can collect detailed hyperspectral information, while retaining the high spatial resolution offered by the sensor. We have developed two versions of a spatio-spectral camera and used them in a variety of conditions. In this paper, we present a summary of three missions with the in-house developed COSI prototype camera (600–900 nm in the domains of precision agriculture (fungus infection monitoring in experimental wheat plots, horticulture (crop status monitoring to evaluate irrigation management in strawberry fields and geology (meteorite detection on a grassland field. Additionally, we describe the characteristics of the 2nd generation, commercially available ButterflEYE camera offering extended spectral range (475–925 nm, and we discuss future work.

  12. a Spatio-Spectral Camera for High Resolution Hyperspectral Imaging (United States)

    Livens, S.; Pauly, K.; Baeck, P.; Blommaert, J.; Nuyts, D.; Zender, J.; Delauré, B.


    Imaging with a conventional frame camera from a moving remotely piloted aircraft system (RPAS) is by design very inefficient. Less than 1 % of the flying time is used for collecting light. This unused potential can be utilized by an innovative imaging concept, the spatio-spectral camera. The core of the camera is a frame sensor with a large number of hyperspectral filters arranged on the sensor in stepwise lines. It combines the advantages of frame cameras with those of pushbroom cameras. By acquiring images in rapid succession, such a camera can collect detailed hyperspectral information, while retaining the high spatial resolution offered by the sensor. We have developed two versions of a spatio-spectral camera and used them in a variety of conditions. In this paper, we present a summary of three missions with the in-house developed COSI prototype camera (600-900 nm) in the domains of precision agriculture (fungus infection monitoring in experimental wheat plots), horticulture (crop status monitoring to evaluate irrigation management in strawberry fields) and geology (meteorite detection on a grassland field). Additionally, we describe the characteristics of the 2nd generation, commercially available ButterflEYE camera offering extended spectral range (475-925 nm), and we discuss future work.

  13. Filtered gradient reconstruction algorithm for compressive spectral imaging (United States)

    Mejia, Yuri; Arguello, Henry


    Compressive sensing matrices are traditionally based on random Gaussian and Bernoulli entries. Nevertheless, they are subject to physical constraints, and their structure unusually follows a dense matrix distribution, such as the case of the matrix related to compressive spectral imaging (CSI). The CSI matrix represents the integration of coded and shifted versions of the spectral bands. A spectral image can be recovered from CSI measurements by using iterative algorithms for linear inverse problems that minimize an objective function including a quadratic error term combined with a sparsity regularization term. However, current algorithms are slow because they do not exploit the structure and sparse characteristics of the CSI matrices. A gradient-based CSI reconstruction algorithm, which introduces a filtering step in each iteration of a conventional CSI reconstruction algorithm that yields improved image quality, is proposed. Motivated by the structure of the CSI matrix, Φ, this algorithm modifies the iterative solution such that it is forced to converge to a filtered version of the residual ΦTy, where y is the compressive measurement vector. We show that the filtered-based algorithm converges to better quality performance results than the unfiltered version. Simulation results highlight the relative performance gain over the existing iterative algorithms.

  14. A Novel Spectral Clustering and its Application in Image Processing

    Directory of Open Access Journals (Sweden)

    Gu Ruijun


    Full Text Available This paper proposes an improved spectral clustering algorithm based on neighbour adaptive scale, who fully considers the local structure of dataset using neighbour adaptive scale, which simplifies the selection of parameters and makes the improved algorithm insensitive to both density and outliers. This paper illustrates the proposed algorithm not only has inhibition for certain outliers but is able to cluster the data sets with different scales. Experiments on UCI data sets show that the proposed method is effective. Some experiments were also performed in image clustering and image segmentation to demonstrate its excellent features in application.

  15. Spectral Properties of Homogeneous and Nonhomogeneous Radar Images

    DEFF Research Database (Denmark)

    Madsen, Søren Nørvang


    On the basis of a two-dimensional, nonstationary white noisemodel for the complex radar backscatter, the spectral properties ofa one-look synthetic-aperture radar (SAR) system is derived. It isshown that the power spectrum of the complex SAR image is sceneindependent. It is also shown...... that the spectrum of the intensityimage is in general related to the radar scene spectrum by a linearintegral equation, a Fredholm's integral equation of the third kind.Under simplifying assumptions, a closed-form equation giving theradar scene spectrum as a function of the SAR image spectrum canbe derived....

  16. [The improved design of encoding mask and the correcting method for recovered spectral images in Hadamard transform spectral imager based on DMD]. (United States)

    Xu, Jun; Xie, Cheng-Wang; Liu, Hai-Wen; Liu, Qiang; Li, Bin-Cheng


    A novel type of DMD-based Hadamard transform spectral imager is introduced. Taking the 7-order S-matrix as an example for discussion, the present paper develops an improved design of Hadamard encoding mask, which makes the dispersed spectrum of all pixels to be encoded by seven elements strictly. A correcting method for the recovered spectral images is proposed, and eventually 6 high-quality spectral images are obtained when Hadamard transform spectral imager operates based on 7-order S-matrix. Similarly, if the spectral imager operates based on n-order S-matrix, n--1 spectral images can be obtained. The experimental results show that the improved design and the correction method are feasible and effective.

  17. Spectrally optimal illuminations for diabetic retinopathy detection in retinal imaging (United States)

    Bartczak, Piotr; Fält, Pauli; Penttinen, Niko; Ylitepsa, Pasi; Laaksonen, Lauri; Lensu, Lasse; Hauta-Kasari, Markku; Uusitalo, Hannu


    Retinal photography is a standard method for recording retinal diseases for subsequent analysis and diagnosis. However, the currently used white light or red-free retinal imaging does not necessarily provide the best possible visibility of different types of retinal lesions, important when developing diagnostic tools for handheld devices, such as smartphones. Using specifically designed illumination, the visibility and contrast of retinal lesions could be improved. In this study, spectrally optimal illuminations for diabetic retinopathy lesion visualization are implemented using a spectrally tunable light source based on digital micromirror device. The applicability of this method was tested in vivo by taking retinal monochrome images from the eyes of five diabetic volunteers and two non-diabetic control subjects. For comparison to existing methods, we evaluated the contrast of retinal images taken with our method and red-free illumination. The preliminary results show that the use of optimal illuminations improved the contrast of diabetic lesions in retinal images by 30-70%, compared to the traditional red-free illumination imaging.

  18. Wavelength and alignment tests for confocal spectral imaging systems. (United States)

    Zucker, Robert M; Lerner, Jeremy M


    Confocal spectral imaging (CSI) microscope systems now on the market delineate multiple fluorescent proteins, labels, or dyes within biological specimens by performing spectral characterizations. However, we find that some CSI present inconsistent spectral profiles of reference spectra within a particular system as well as between related and unrelated instruments. We also find evidence of instability that, if not diagnosed, could lead to inconsistent data. This variability confirms the need for diagnostic tools to provide a standardized, objective means of characterizing instability, evidence of misalignment, as well as performing calibration and validation functions. Our protocol uses an inexpensive multi-ion discharge lamp (MIDL) that contains Hg+, Ar+, and inorganic fluorophores that emit distinct, stable spectral features, in place of a sample. An MIDL characterization verifies the accuracy and consistency of a CSI system and validates acquisitions of biological samples. We examined a total of 10 CSI systems, all of which displayed spectral inconsistencies, enabling us to identify malfunctioning subsystems. Only one of the 10 instruments met its optimal performance expectations. We have found that using a primary light source that emits an absolute standard "reference spectrum" enabled us to diagnose instrument errors and measure accuracy and reproducibility under normalized conditions. Using this information, a CSI operator can determine whether a CSI system is working optimally and make objective comparisons with the performance of other CSI systems. It is evident that if CSI systems of a similar make and model were standardized to reveal the same spectral profile from a standard light source, then researchers could be confident that real-life experimental findings would be repeatable on any similar system. (c) 2005 Wiley-Liss, Inc.

  19. Light source design for spectral tuning in biomedical imaging. (United States)

    Basu, Chandrajit; Schlangen, Sebastian; Meinhardt-Wollweber, Merve; Roth, Bernhard


    We propose an architecture with a remote phosphor-based modular and compact light-emitting diode (LED) light source in a noncontact dermoscope prototype for skin cancer screening. The spectrum and color temperature of the output light can easily and significantly be changed depending on spectral absorption characteristics of the tissues being imaged. The new system has several advantages compared to state-of-the-art phosphor converted ultrabright white LEDs, used in a wide range of medical imaging devices, which have a fixed spectrum and color temperature at a given operating point. In particular, the system can more easily be adapted to the requirements originating from different tissues in the human body, which have wavelength-dependent absorption and reflectivity. This leads to improved contrast for different kinds of imaged tissue components. The concept of such a lighting architecture can be vastly utilized in many other medical imaging devices including endoscopic systems.

  20. Multi-spectral fluorescence imaging for cultural heritage (United States)

    Comelli, Daniela; Valentini, Gianluca; Cubeddu, Rinaldo; Toniolo, Lucia


    A portable fluorescence multi-spectral imaging system was developed and applied to the analysis of artistic surfaces. The imaging apparatus exploits UV lamps for excitation and a liquid crystal tunable filter coupled to a low-noise CCD as the image detector. A sequence of images is acquired by sweeping the transmission band of the filter in order to slice the fluorescence emission in many narrow bands within the visible region of the e.m. spectrum. In this way, the fluorescence spectrum is recorded in each point of the analyzed area. The main features of the system will be discussed, together with its application to the analysis of the fluorescence properties of binders and pigment typically used in mural paintings. Finally, the study of the conservation of Renaissance frescoes recently restored will be presented.

  1. Accuracy in mineral identification: image spectral and spatial resolutions and mineral spectral properties

    Directory of Open Access Journals (Sweden)

    L. Pompilio


    Full Text Available Problems related to airborne hyperspectral image data are reviewed and the requirements for data analysis applied to mineralogical (rocks and soils interpretation are discussed. The variability of mineral spectral features, including absorption position, shape and depth is considered and interpreted as due to chemical composition, grain size effects and mineral association. It is also shown how this variability can be related to well defined geologic processes. The influence of sensor noise and diffuse atmospheric radiance in classification accuracy is also analyzed.

  2. Ultrahigh speed spectral/Fourier domain OCT imaging in ophthalmology (United States)

    Potsaid, Benjamin; Gorczynska, Iwona; Srinivasan, Vivek J.; Chen, Yueli; Liu, Jonathan; Jiang, James; Cable, Alex; Duker, Jay S.; Fujimoto, James G.


    Ultrahigh speed Spectral/Fourier domain ophthalmic OCT imaging at 70,000-312,500 axial scans per second is demonstrated using a high speed CMOS camera at 800 nm. Comparative imaging results of the fovea illustrate the performance tradeoffs between different imaging speeds and spectrometer configurations. Dense 3D volumetric acquisitions show minimal motion artifacts when acquired at 250,000 axial scans per second. The porous structure of the lamina cribrosa is shown in en face images extracted from a dense volumetric acquisition of the optical nerve head acquired at 106, 382 axial scans per second. Rapid repeated volume imaging (4D-OCT) shows blood flow in retinal capillaries. Boundaries of the capillary network are enhanced by motion contrast. 3D volumetric data acquired at 49,000 axial scans per second using an InGaAs camera at 1050 nm is compared to volumetric data acquired at 101, 010 axial scans per second using a CMOS camera at 800nm. Averaging of adjacent cross sectional scans in the volume is shown to increase contrast in the images and reduce speckle. The enhanced penetration of the 1050 nm compared to the 800 nm OCT imaging system is shown. Dense 2D/3D data sets and 4D-OCT repeated volume imaging promise alternative methods for diagnosis and monitoring of disease.

  3. Spectrally resolved incoherent holography: 3D spatial and spectral imaging using a Mach-Zehnder radial-shearing interferometer. (United States)

    Naik, Dinesh N; Pedrini, Giancarlo; Takeda, Mitsuo; Osten, Wolfgang


    Spatial and spectral information holds the key for characterizing incoherently illuminated or self-luminous objects, as well as for imaging fluorescence. We propose spectrally resolved incoherent holography using a multifunctional Mach-Zehnder interferometer that can introduce both a radial shear and a variable time delay between the interfering optical fields and permits the measurement of both spatial and temporal coherence functions, from which a 3D spatial and spectral image of the object is reconstructed. We propose and demonstrate the accurate 3D imaging of the object spectra by in situ calibration.

  4. Cryptanalysis of an Image Encryption Algorithm Based on DNA Sequence Operation and Hyper-chaotic System (United States)

    Xu, Ming


    Recently, chaotic image cipher using DNA sequence operation has been studied extensively. However, corresponding cryptanalysis is lacking, which impedes its further development. This paper cryptanalyzes a newly proposed chaotic image cipher based on DNA sequence operation. In this paper, we firstly analyze the security defects of the proposal. Then by applying chosen-plaintext attack, we show that all the secret parameters can be revealed. The effectiveness of the proposed chosen-plaintext attack is supported both by rigorous theoretical analysis and experimental results.

  5. Quantitative evaluation of perfusion magnetic resonance imaging hyper-acute ischemic stroke patients comparison with 1.5T and 3.0T units

    Energy Technology Data Exchange (ETDEWEB)

    Goo, Eun Hoe [Dept. of Radiological Science, Cheongju University, Cheongju (Korea, Republic of); Moon, Il Bong; Dong, Kyung Rae [Dept. of Radiological Technology, Gwangju Health University, Gwangju (Korea, Republic of)


    Perfusion magnetic resonance image of biological mechanism are independent of magnetic field strength in hyper acute ischemic stroke. 3.0 T magnetic field, however, does affect the SNRs (signal to noise ratio) and artifacts of PMRI (perfusion magnetic resonance image), which basically will influence the quantitative of PMRI. In this study, the effects of field strength on PMRI are analyzed. The effects of the diseases also are discussed. PMRI in WM (white matter), GM (gray matter), hyper acute ischemic stroke were companied with 1.5 T and 3.0 T on SNR. PMRI also was compared to the SI difference after setting ROI (region of interest) in left and right b side of the brain. In conclusion, the SNRs and SI of the 3.0 T PMRI showed higher than those at 1.5 T. In summary, PMRI studies at 3.0 T is provided significantly improved perfusion evaluation when comparing with 1.5 T.

  6. Gastric cancer staging with dual energy spectral CT imaging.

    Directory of Open Access Journals (Sweden)

    Zilai Pan

    Full Text Available PURPOSE: To evaluate the clinical utility of dual energy spectral CT (DEsCT in staging and characterizing gastric cancers. MATERIALS AND METHODS: 96 patients suspected of gastric cancers underwent dual-phasic scans (arterial phase (AP and portal venous phase (PP with DEsCT mode. Three types of images were reconstructed for analysis: conventional polychromatic images, material-decomposition images, and monochromatic image sets with photon energies from 40 to 140 keV. The polychromatic and monochromatic images were compared in TNM staging. The iodine concentrations in the lesions and lymph nodes were measured on the iodine-based material-decomposition images. These values were further normalized against that in aorta and the normalized iodine concentration (nIC values were statistically compared. Results were correlated with pathological findings. RESULTS: The overall accuracies for T, N and M staging were (81.2%, 80.0%, and 98.9% and (73.9%, 75.0%, and 98.9% determined with the monochromatic images and the conventional kVp images, respectively. The improvement of the accuracy in N-staging using the keV images was statistically significant (p<0.05. The nIC values between the differentiated and undifferentiated carcinoma and between metastatic and non-metastatic lymph nodes were significantly different both in AP (p = 0.02, respectively and PP (p = 0.01, respectively. Among metastatic lymph nodes, nIC of the signet-ring cell carcinoma were significantly different from the adenocarcinoma (p = 0.02 and mucinous adenocarcinoma (p = 0.01 in PP. CONCLUSION: The monochromatic images obtained with DEsCT may be used to improve the N-staging accuracy. Quantitative iodine concentration measurements may be helpful for differentiating between differentiated and undifferentiated gastric carcinoma, and between metastatic and non-metastatic lymph nodes.

  7. Quantitative imaging of excised osteoarthritic cartilage using spectral CT

    Energy Technology Data Exchange (ETDEWEB)

    Rajendran, Kishore; Bateman, Christopher J.; Younis, Raja Aamir; De Ruiter, Niels J.A.; Ramyar, Mohsen; Anderson, Nigel G. [University of Otago - Christchurch, Department of Radiology, Christchurch (New Zealand); Loebker, Caroline [University of Otago, Christchurch Regenerative Medicine and Tissue Engineering Group, Department of Orthopaedic Surgery and Musculoskeletal Medicine, Christchurch (New Zealand); University of Twente, Department of Developmental BioEngineering, Enschede (Netherlands); Schon, Benjamin S.; Hooper, Gary J.; Woodfield, Tim B.F. [University of Otago, Christchurch Regenerative Medicine and Tissue Engineering Group, Department of Orthopaedic Surgery and Musculoskeletal Medicine, Christchurch (New Zealand); Chernoglazov, Alex I. [University of Canterbury, Human Interface Technology Laboratory New Zealand, Christchurch (New Zealand); Butler, Anthony P.H. [University of Otago - Christchurch, Department of Radiology, Christchurch (New Zealand); European Organisation for Nuclear Research (CERN), Geneva (Switzerland); MARS Bioimaging, Christchurch (New Zealand)


    To quantify iodine uptake in articular cartilage as a marker of glycosaminoglycan (GAG) content using multi-energy spectral CT. We incubated a 25-mm strip of excised osteoarthritic human tibial plateau in 50 % ionic iodine contrast and imaged it using a small-animal spectral scanner with a cadmium telluride photon-processing detector to quantify the iodine through the thickness of the articular cartilage. We imaged both spectroscopic phantoms and osteoarthritic tibial plateau samples. The iodine distribution as an inverse marker of GAG content was presented in the form of 2D and 3D images after applying a basis material decomposition technique to separate iodine in cartilage from bone. We compared this result with a histological section stained for GAG. The iodine in cartilage could be distinguished from subchondral bone and quantified using multi-energy CT. The articular cartilage showed variation in iodine concentration throughout its thickness which appeared to be inversely related to GAG distribution observed in histological sections. Multi-energy CT can quantify ionic iodine contrast (as a marker of GAG content) within articular cartilage and distinguish it from bone by exploiting the energy-specific attenuation profiles of the associated materials. (orig.)

  8. Open issues in hyperspectral imaging for diagnostics on paintings: when high-spectral and spatial resolution turns into data redundancy (United States)

    Cucci, Costanza; Casini, Andrea; Picollo, Marcello; Poggesi, Marco; Stefani, Lorenzo


    Hyper-Spectral Imaging (HSI) has emerged in the last decade as one of the most promising technologies for diagnostics and documentation of polychrome surfaces. Despite the fact that presently HSI is a well-established technique for non-invasive investigations on paintings, a number of technological issues remain open and are still topics for on-going studies. In particular, it is known that high spatial resolution is a crucial parameter for obtaining high quality images, whereas the possibility to identify pictorial materials strictly depends on the spectral resolution and on the extent of the spectral region investigated. At the same time, by increasing the sampling rates in both the spatial and spectral dimensions, the size of the data-set will be enlarged and the acquisition times will be lengthened. As a consequence, a good compromise between the acquisition of highquality data and their application should always be reached, taking into account the specific purposes of the HSI application. The above questions are discussed in the present work, which illustrates two applications of the latest version of a hyperspectral scanner designed at IFAC-CNR for the digitization of artworks. The prototype has recently been upgraded, with new visualization software as well as mechanical and optical improvements. This high performance system operates in the 400-1000nm spectral range, with a spectral resolution of about 2-3 nm and a spatial sampling of 0.1 mm over areas of about 1 m2. Three case-studies are presented, which highlight the importance of both high spatial and high spectral sampling rate in hyperspectral imaging. Two of the examples reported focus on the full exploitation of the spatial resolution: the first one is a study performed on a small painting, dated from the eighteenth century and belonging to the Uffizi Gallery in Florence; the second case-study refers to the valuable "Carrand diptych" (14th century) from the Bargello Museum in Florence. The last

  9. SAR image segmentation using MSER and improved spectral clustering (United States)

    Gui, Yang; Zhang, Xiaohu; Shang, Yang


    A novel approach is presented for synthetic aperture radar (SAR) image segmentation. By incorporating the advantages of maximally stable extremal regions (MSER) algorithm and spectral clustering (SC) method, the proposed approach provides effective and robust segmentation. First, the input image is transformed from a pixel-based to a region-based model by using the MSER algorithm. The input image after MSER procedure is composed of some disjoint regions. Then the regions are treated as nodes in the image plane, and a graph structure is applied to represent them. Finally, the improved SC is used to perform globally optimal clustering, by which the result of image segmentation can be generated. To avoid some incorrect partitioning when considering each region as one graph node, we assign different numbers of nodes to represent the regions according to area ratios among the regions. In addition, K-harmonic means instead of K-means is applied in the improved SC procedure in order to raise its stability and performance. Experimental results show that the proposed approach is effective on SAR image segmentation and has the advantage of calculating quickly.

  10. Design of a nano-satellite demonstrator of an infrared imaging space interferometer: the HyperCube (United States)

    Dohlen, Kjetil; Vives, Sébastien; Rakotonimbahy, Eddy; Sarkar, Tanmoy; Tasnim Ava, Tanzila; Baccichet, Nicola; Savini, Giorgio; Swinyard, Bruce


    The construction of a kilometer-baseline far infrared imaging interferometer is one of the big instrumental challenges for astronomical instrumentation in the coming decades. Recent proposals such as FIRI, SPIRIT, and PFI illustrate both science cases, from exo-planetary science to study of interstellar media and cosmology, and ideas for construction of such instruments, both in space and on the ground. An interesting option for an imaging multi-aperture interferometer with km baseline is the space-based hyper telescope (HT) where a giant, sparsely populated primary mirror is constituted of several free-flying satellites each carrying a mirror segment. All the segments point the same object and direct their part of the pupil towards a common focus where another satellite, containing recombiner optics and a detector unit, is located. In Labeyrie's [1] original HT concept, perfect phasing of all the segments was assumed, allowing snap-shot imaging within a reduced field of view and coronagraphic extinction of the star. However, for a general purpose observatory, image reconstruction using closure phase a posteriori image reconstruction is possible as long as the pupil is fully non-redundant. Such reconstruction allows for much reduced alignment tolerances, since optical path length control is only required to within several tens of wavelengths, rather than within a fraction of a wavelength. In this paper we present preliminary studies for such an instrument and plans for building a miniature version to be flown on a nano satellite. A design for recombiner optics is proposed, including a scheme for exit pupil re-organization, is proposed, indicating the focal plane satellite in the case of a km-baseline interferometer could be contained within a 1m3 unit. Different options for realization of a miniature version are presented, including instruments for solar observations in the visible and the thermal infrared and giant planet observations in the visible, and an

  11. Multiphoton FLIM and spectral imaging of cells and tissues (United States)

    Konig, Karsten; Riemann, Iris; Ehrlich, Gunter; Ulrich, Volker; Fischer, Peter


    Five-dimensional (5D) multiphoton measurements with submicron spatial resolution, 270 ps temporal resolution and 5 nm spectral resolution have been performed on living cells and tissues at 750 nm - 850 nm laser excitation. A compact (65x62x48 cm3) multiport laser scanning microscope TauMap (JenLab GmbH) equipped with fast PMT and CCD camera, SPC 830 time-correlated single photon counting board and Sagnac interferometer was used. Laser excitation radiation was provided by a tuneable MaiTai Ti:sapphire femtosecond laser as well as by a 405 nm 50 MHz picosecond laser diode. The spectral and temporal fluorescence behaviour of intratissue chloroplasts of water plant leafs, of a variety of exogenous fluorophores as well as of fluorescent proteins in transfected brain cells have been studied. When calculating fluorescence lifetime images (FLIM) we found differences in intracellular twophoton fluorescence lifetimes vs. one-photon fluorescence lifetimes. Multiphoton FLIM-FRET and multiphoton spectral FRET studies have been performed in living HBMEC brain cells using CFP and YFP fusion proteins. It was shown that FLIM-FRET data depend on laser power due to photodestructive multiphoton effects. This has to be considered in long-term fluorescence resonance energy transfer studies of dynamic protein-protein interactions.

  12. Spectral Skyline Separation: Extended Landmark Databases and Panoramic Imaging

    Directory of Open Access Journals (Sweden)

    Dario Differt


    Full Text Available Evidence from behavioral experiments suggests that insects use the skyline as a cue for visual navigation. However, changes of lighting conditions, over hours, days or possibly seasons, significantly affect the appearance of the sky and ground objects. One possible solution to this problem is to extract the “skyline” by an illumination-invariant classification of the environment into two classes, ground objects and sky. In a previous study (Insect models of illumination-invariant skyline extraction from UV (ultraviolet and green channels, we examined the idea of using two different color channels available for many insects (UV and green to perform this segmentation. We found out that for suburban scenes in temperate zones, where the skyline is dominated by trees and artificial objects like houses, a “local” UV segmentation with adaptive thresholds applied to individual images leads to the most reliable classification. Furthermore, a “global” segmentation with fixed thresholds (trained on an image dataset recorded over several days using UV-only information is only slightly worse compared to using both the UV and green channel. In this study, we address three issues: First, to enhance the limited range of environments covered by the dataset collected in the previous study, we gathered additional data samples of skylines consisting of minerals (stones, sand, earth as ground objects. We could show that also for mineral-rich environments, UV-only segmentation achieves a quality comparable to multi-spectral (UV and green segmentation. Second, we collected a wide variety of ground objects to examine their spectral characteristics under different lighting conditions. On the one hand, we found that the special case of diffusely-illuminated minerals increases the difficulty to reliably separate ground objects from the sky. On the other hand, the spectral characteristics of this collection of ground objects covers well with the data collected

  13. Flash spectral imaging for optical metrology of solar cells (United States)

    Ho, Jian Wei; Koh, Jessica Li Jian; Wong, Johnson Kai Chi; Raj, Samuel; Janssen, Eric; Aberle, Armin G.


    Flash spectral imaging of full area (156 mm by 156 mm) silicon solar wafers and cells is realized in a setup integrating pseudo-monochromatic LEDs over the wavelength range of 370 to 1050 nm and a high-resolution monochrome camera. The captured information allows the computation of sample reflectance as a function of wavelength and coordinates, thereby constituting a spectral reflectance map. The derived values match that obtained from monochromator-based measurements. Optical inspection is then based on the characteristic reflectance of surface features at optimally contrasting wavelengths. The technique reveals otherwise hidden stains and anti-reflection coating (ARC) non-uniformities, and enable more selective visualization of grains in multicrystalline Si wafers. Optical contrast enhancement of metallization significantly improves accuracy of metal detection. The high effective resolution of the monochrome camera also allows fine metallization patterns to be measured. The rapid succession of flash-and-image-capture at each wavelength makes the reported optical metrology technique amenable in photovoltaic manufacturing for solar wafers/cells sorting, monitoring and optimization of processes.

  14. Open-box spectral clustering: applications to medical image analysis. (United States)

    Schultz, Thomas; Kindlmann, Gordon L


    Spectral clustering is a powerful and versatile technique, whose broad range of applications includes 3D image analysis. However, its practical use often involves a tedious and time-consuming process of tuning parameters and making application-specific choices. In the absence of training data with labeled clusters, help from a human analyst is required to decide the number of clusters, to determine whether hierarchical clustering is needed, and to define the appropriate distance measures, parameters of the underlying graph, and type of graph Laplacian. We propose to simplify this process via an open-box approach, in which an interactive system visualizes the involved mathematical quantities, suggests parameter values, and provides immediate feedback to support the required decisions. Our framework focuses on applications in 3D image analysis, and links the abstract high-dimensional feature space used in spectral clustering to the three-dimensional data space. This provides a better understanding of the technique, and helps the analyst predict how well specific parameter settings will generalize to similar tasks. In addition, our system supports filtering outliers and labeling the final clusters in such a way that user actions can be recorded and transferred to different data in which the same structures are to be found. Our system supports a wide range of inputs, including triangular meshes, regular grids, and point clouds. We use our system to develop segmentation protocols in chest CT and brain MRI that are then successfully applied to other datasets in an automated manner.

  15. Spectral imaging toolbox: segmentation, hyperstack reconstruction, and batch processing of spectral images for the determination of cell and model membrane lipid order. (United States)

    Aron, Miles; Browning, Richard; Carugo, Dario; Sezgin, Erdinc; Bernardino de la Serna, Jorge; Eggeling, Christian; Stride, Eleanor


    Spectral imaging with polarity-sensitive fluorescent probes enables the quantification of cell and model membrane physical properties, including local hydration, fluidity, and lateral lipid packing, usually characterized by the generalized polarization (GP) parameter. With the development of commercial microscopes equipped with spectral detectors, spectral imaging has become a convenient and powerful technique for measuring GP and other membrane properties. The existing tools for spectral image processing, however, are insufficient for processing the large data sets afforded by this technological advancement, and are unsuitable for processing images acquired with rapidly internalized fluorescent probes. Here we present a MATLAB spectral imaging toolbox with the aim of overcoming these limitations. In addition to common operations, such as the calculation of distributions of GP values, generation of pseudo-colored GP maps, and spectral analysis, a key highlight of this tool is reliable membrane segmentation for probes that are rapidly internalized. Furthermore, handling for hyperstacks, 3D reconstruction and batch processing facilitates analysis of data sets generated by time series, z-stack, and area scan microscope operations. Finally, the object size distribution is determined, which can provide insight into the mechanisms underlying changes in membrane properties and is desirable for e.g. studies involving model membranes and surfactant coated particles. Analysis is demonstrated for cell membranes, cell-derived vesicles, model membranes, and microbubbles with environmentally-sensitive probes Laurdan, carboxyl-modified Laurdan (C-Laurdan), Di-4-ANEPPDHQ, and Di-4-AN(F)EPPTEA (FE), for quantification of the local lateral density of lipids or lipid packing. The Spectral Imaging Toolbox is a powerful tool for the segmentation and processing of large spectral imaging datasets with a reliable method for membrane segmentation and no ability in programming required. The

  16. Color camera computed tomography imaging spectrometer for improved spatial-spectral image accuracy (United States)

    Wilson, Daniel W. (Inventor); Bearman, Gregory H. (Inventor); Johnson, William R. (Inventor)


    Computed tomography imaging spectrometers ("CTIS"s) having color focal plane array detectors are provided. The color FPA detector may comprise a digital color camera including a digital image sensor, such as a Foveon X3.RTM. digital image sensor or a Bayer color filter mosaic. In another embodiment, the CTIS includes a pattern imposed either directly on the object scene being imaged or at the field stop aperture. The use of a color FPA detector and the pattern improves the accuracy of the captured spatial and spectral information.

  17. Spectral imaging of multi-color chromogenic dyes in pathological specimens.

    NARCIS (Netherlands)

    Macville, M.V.E.; Laak, J.A.W.M. van der; Speel, E.J.; Katzir, N.; Garini, Y.; Soenksen, D.; McNamara, G.; Wilde, P.C.M. de; Hanselaar, A.G.J.M.; Hopman, A.H.N.; Ried, T.


    We have investigated the use of spectral imaging for multi-color analysis of permanent cytochemical dyes and enzyme precipitates on cytopathological specimens. Spectral imaging is based on Fourier-transform spectroscopy and digital imaging. A pixel-by-pixel spectrum-based color classification is

  18. Spectral optical coherence tomography: a novel technique for cornea imaging. (United States)

    Kaluzny, Bartłomiej J; Kaluzy, Bartłomiej J; Kałuzny, Jakub J; Szkulmowska, Anna; Gorczyńska, Iwona; Szkulmowski, Maciej; Bajraszewski, Tomasz; Wojtkowski, Maciej; Targowski, Piotr


    Spectral optical coherence tomography (SOCT) is a new, noninvasive, noncontact, high-resolution technique that provides cross-sectional images of the objects that weakly absorb and scatter light. SOCT, because of very short acquisition time and high sensitivity, is capable of providing tomograms of substantially better quality than the conventional OCT. The aim of this paper is to show the application of the SOCT to cross-sectional imaging of the cornea and its pathologies. Eleven eyes with different corneal pathologies were examined with a slit lamp and the use of a prototype SOCT instrument constructed in the Institute of Physics, Nicolaus Copernicus University, Toruń, Poland. Our SOCT system provides high-resolution (4 microm axial, 10 microm transversal) tomograms composed of 3000-5000 A-scans with an acquisition time of 120-200 ms. The quality of the images is adequate for detailed cross-sectional evaluation of various corneal pathologies. Objective assessment of the localization, size, shape, and light-scattering properties of the changed tissue is possible. Corneal and epithelial thickness and the depth and width of lesions can be estimated. SOCT technique allows acquiring clinically valuable cross-sectional optical biopsy of the cornea and its pathologies.

  19. Integrated Spectral Low Noise Image Sensor with Nanowire Polarization Filters for Low Contrast Imaging (United States)


    found sexually dimorphic polarized reflectance, polarization-dependent mate choice behavior, and differential polarization signaling across social...investigate alternative spectral imaging architectures based on my previous experience in this research area. I will develop nanowire polarization...influence the accuracy of this estimation. Presented here are a formal system of DISTRIBUTION A: Distribution approved for public release experiments

  20. Multimodal Spectral Imaging of Cells Using a Transmission Diffraction Grating on a Light Microscope (United States)

    Isailovic, Dragan; Xu, Yang; Copus, Tyler; Saraswat, Suraj; Nauli, Surya M.


    A multimodal methodology for spectral imaging of cells is presented. The spectral imaging setup uses a transmission diffraction grating on a light microscope to concurrently record spectral images of cells and cellular organelles by fluorescence, darkfield, brightfield, and differential interference contrast (DIC) spectral microscopy. Initially, the setup was applied for fluorescence spectral imaging of yeast and mammalian cells labeled with multiple fluorophores. Fluorescence signals originating from fluorescently labeled biomolecules in cells were collected through triple or single filter cubes, separated by the grating, and imaged using a charge-coupled device (CCD) camera. Cellular components such as nuclei, cytoskeleton, and mitochondria were spatially separated by the fluorescence spectra of the fluorophores present in them, providing detailed multi-colored spectral images of cells. Additionally, the grating-based spectral microscope enabled measurement of scattering and absorption spectra of unlabeled cells and stained tissue sections using darkfield and brightfield or DIC spectral microscopy, respectively. The presented spectral imaging methodology provides a readily affordable approach for multimodal spectral characterization of biological cells and other specimens. PMID:21639978

  1. Review of spectral imaging technology in biomedical engineering: achievements and challenges. (United States)

    Li, Qingli; He, Xiaofu; Wang, Yiting; Liu, Hongying; Xu, Dongrong; Guo, Fangmin


    Spectral imaging is a technology that integrates conventional imaging and spectroscopy to get both spatial and spectral information from an object. Although this technology was originally developed for remote sensing, it has been extended to the biomedical engineering field as a powerful analytical tool for biological and biomedical research. This review introduces the basics of spectral imaging, imaging methods, current equipment, and recent advances in biomedical applications. The performance and analytical capabilities of spectral imaging systems for biological and biomedical imaging are discussed. In particular, the current achievements and limitations of this technology in biomedical engineering are presented. The benefits and development trends of biomedical spectral imaging are highlighted to provide the reader with an insight into the current technological advances and its potential for biomedical research.

  2. Retinal Imaging of Infants on Spectral Domain Optical Coherence Tomography

    Directory of Open Access Journals (Sweden)

    Anand Vinekar


    Full Text Available Spectral domain coherence tomography (SD OCT has become an important tool in the management of pediatric retinal diseases. It is a noncontact imaging device that provides detailed assessment of the microanatomy and pathology of the infant retina with a short acquisition time allowing office examination without the requirement of anesthesia. Our understanding of the development and maturation of the infant fovea has been enhanced by SD OCT allowing an in vivo assessment that correlates with histopathology. This has helped us understand the critical correlation of foveal development with visual potential in the first year of life and beyond. In this review, we summarize the recent literature on the clinical applications of SD OCT in studying the pathoanatomy of the infant macula, its ability to detect subclinical features, and its correlation with disease and vision. Retinopathy of prematurity and macular edema have been discussed in detail. The review also summarizes the current status of SD OCT in other infant retinal conditions, imaging the optic nerve, the choroid, and the retinal nerve fibre in infants and children, and suggests future areas of research.


    Directory of Open Access Journals (Sweden)

    Z. Huang


    Full Text Available Variational pansharpening can enhance the spatial resolution of a hyperspectral (HS image using a high-resolution panchromatic (PAN image. However, this technology may lead to spectral distortion that obviously affect the accuracy of data analysis. In this article, we propose an improved variational method for HS image pansharpening with the constraint of spectral difference minimization. We extend the energy function of the classic variational pansharpening method by adding a new spectral fidelity term. This fidelity term is designed following the definition of spectral angle mapper, which means that for every pixel, the spectral difference value of any two bands in the HS image is in equal proportion to that of the two corresponding bands in the pansharpened image. Gradient descent method is adopted to find the optimal solution of the modified energy function, and the pansharpened image can be reconstructed. Experimental results demonstrate that the constraint of spectral difference minimization is able to preserve the original spectral information well in HS images, and reduce the spectral distortion effectively. Compared to original variational method, our method performs better in both visual and quantitative evaluation, and achieves a good trade-off between spatial and spectral information.

  4. An Improved Variational Method for Hyperspectral Image Pansharpening with the Constraint of Spectral Difference Minimization (United States)

    Huang, Z.; Chen, Q.; Shen, Y.; Chen, Q.; Liu, X.


    Variational pansharpening can enhance the spatial resolution of a hyperspectral (HS) image using a high-resolution panchromatic (PAN) image. However, this technology may lead to spectral distortion that obviously affect the accuracy of data analysis. In this article, we propose an improved variational method for HS image pansharpening with the constraint of spectral difference minimization. We extend the energy function of the classic variational pansharpening method by adding a new spectral fidelity term. This fidelity term is designed following the definition of spectral angle mapper, which means that for every pixel, the spectral difference value of any two bands in the HS image is in equal proportion to that of the two corresponding bands in the pansharpened image. Gradient descent method is adopted to find the optimal solution of the modified energy function, and the pansharpened image can be reconstructed. Experimental results demonstrate that the constraint of spectral difference minimization is able to preserve the original spectral information well in HS images, and reduce the spectral distortion effectively. Compared to original variational method, our method performs better in both visual and quantitative evaluation, and achieves a good trade-off between spatial and spectral information.

  5. Orthogonal polarization spectral (OPS) imaging and topographical characteristics of oral squamous cell carcinoma

    NARCIS (Netherlands)

    Lindeboom, Jerome A.; Mathura, Keshen R.; Ince, Can


    Tumor microcirculatory characteristics until now have only been assessed by histological examination of biopsies or invasive imaging technique. The recent introduction of orthogonal polarization spectral (OPS) imaging as a new tool for in vivo visualization of human microcirculation makes it

  6. Double-AOTF-based aberration-free spectral imaging endoscopic system for biomedical applications

    Directory of Open Access Journals (Sweden)

    Alexander Machikhin


    Full Text Available The problem of in vivo photoluminescence diagnostics of the tissues accessible by endoscopes is discussed. The spectral imaging module attachable to conventional rigid and flexible medical endoscopes is developed and described. It is based on a double acousto-optical tunable filter (AOTF and a specialized optical coupling system. The module provides wide field of view (FOV, absence of image distortions, random spectral access, fast spectral image acquisition at any wavelength in the visible range and accurate measurement of reflectance spectrum in each pixel of the image. Images of typical biomedical samples are presented and discussed. Their spectra are compared to the reference data.

  7. Software defined multi-spectral imaging for Arctic sensor networks (United States)

    Siewert, Sam; Angoth, Vivek; Krishnamurthy, Ramnarayan; Mani, Karthikeyan; Mock, Kenrick; Singh, Surjith B.; Srivistava, Saurav; Wagner, Chris; Claus, Ryan; Vis, Matthew Demi


    Availability of off-the-shelf infrared sensors combined with high definition visible cameras has made possible the construction of a Software Defined Multi-Spectral Imager (SDMSI) combining long-wave, near-infrared and visible imaging. The SDMSI requires a real-time embedded processor to fuse images and to create real-time depth maps for opportunistic uplink in sensor networks. Researchers at Embry Riddle Aeronautical University working with University of Alaska Anchorage at the Arctic Domain Awareness Center and the University of Colorado Boulder have built several versions of a low-cost drop-in-place SDMSI to test alternatives for power efficient image fusion. The SDMSI is intended for use in field applications including marine security, search and rescue operations and environmental surveys in the Arctic region. Based on Arctic marine sensor network mission goals, the team has designed the SDMSI to include features to rank images based on saliency and to provide on camera fusion and depth mapping. A major challenge has been the design of the camera computing system to operate within a 10 to 20 Watt power budget. This paper presents a power analysis of three options: 1) multi-core, 2) field programmable gate array with multi-core, and 3) graphics processing units with multi-core. For each test, power consumed for common fusion workloads has been measured at a range of frame rates and resolutions. Detailed analyses from our power efficiency comparison for workloads specific to stereo depth mapping and sensor fusion are summarized. Preliminary mission feasibility results from testing with off-the-shelf long-wave infrared and visible cameras in Alaska and Arizona are also summarized to demonstrate the value of the SDMSI for applications such as ice tracking, ocean color, soil moisture, animal and marine vessel detection and tracking. The goal is to select the most power efficient solution for the SDMSI for use on UAVs (Unoccupied Aerial Vehicles) and other drop

  8. Frequency up-conversion based single photon, mid-IR spectral imaging with 20% quantum efficiency

    DEFF Research Database (Denmark)

    Tidemand-Lichtenberg, Peter; Dam, Jeppe Seidelin; Pedersen, Christian

    Spectral imaging of mid-infrared (mid-IR) light is emerging as a promising technology since important chemical compounds display unique and strong mid-IR spectral fingerprints. We demonstrate for detection a novel method including a field deployable imaging system with single photon sensitivity...

  9. Multichannel tunable imager architecture for hyperspectral imaging in relevant spectral domains. (United States)

    Goenka, Chhavi; Semeter, Joshua; Noto, John; Baumgardner, Jeffrey; Riccobono, Juanita; Migliozzi, Mike; Dahlgren, Hanna; Marshall, Robert; Kapali, Sudha; Hirsch, Michael; Hampton, Donald; Akbari, Hassanali


    In this paper, we present a technique for dimensionality reduction in hyperspectral imaging during the data collection process. A four-channel hyperspectral imager using liquid crystal Fabry-Perot etalons has been built and used to verify this method for four applications: auroral imaging, plant study, landscape classification, and anomaly detection. This imager is capable of making measurements simultaneously in four wavelength ranges while being tunable within those ranges, and thus can be used to measure narrow contiguous bands in four spectral domains. In this paper, we describe the design, concept of operation, and deployment of this instrument. The results from preliminary testing of this instrument are discussed and are promising and demonstrate this instrument as a good candidate for hyperspectral imaging.

  10. Comparison of Background Parenchymal Enhancement at Contrast-enhanced Spectral Mammography and Breast MR Imaging. (United States)

    Sogani, Julie; Morris, Elizabeth A; Kaplan, Jennifer B; D'Alessio, Donna; Goldman, Debra; Moskowitz, Chaya S; Jochelson, Maxine S


    Purpose To assess the extent of background parenchymal enhancement (BPE) at contrast material-enhanced (CE) spectral mammography and breast magnetic resonance (MR) imaging, to evaluate interreader agreement in BPE assessment, and to examine the relationships between clinical factors and BPE. Materials and Methods This was a retrospective, institutional review board-approved, HIPAA-compliant study. Two hundred seventy-eight women from 25 to 76 years of age with increased breast cancer risk who underwent CE spectral mammography and MR imaging for screening or staging from 2010 through 2014 were included. Three readers independently rated BPE on CE spectral mammographic and MR images with the ordinal scale: minimal, mild, moderate, or marked. To assess pairwise agreement between BPE levels on CE spectral mammographic and MR images and among readers, weighted κ coefficients with quadratic weights were calculated. For overall agreement, mean κ values and bootstrapped 95% confidence intervals were calculated. The univariate and multivariate associations between BPE and clinical factors were examined by using generalized estimating equations separately for CE spectral mammography and MR imaging. Results Most women had minimal or mild BPE at both CE spectral mammography (68%-76%) and MR imaging (69%-76%). Between CE spectral mammography and MR imaging, the intrareader agreement ranged from moderate to substantial (κ = 0.55-0.67). Overall agreement on BPE levels between CE spectral mammography and MR imaging and among readers was substantial (κ = 0.66; 95% confidence interval: 0.61, 0.70). With both modalities, BPE demonstrated significant association with menopausal status, prior breast radiation therapy, hormonal treatment, breast density on CE spectral mammographic images, and amount of fibroglandular tissue on MR images (P < .001 for all). Conclusion There was substantial agreement between readers for BPE detected on CE spectral mammographic and MR images. © RSNA

  11. Spectral-Spatial Shared Linear Regression for Hyperspectral Image Classification. (United States)

    Haoliang Yuan; Yuan Yan Tang


    Classification of the pixels in hyperspectral image (HSI) is an important task and has been popularly applied in many practical applications. Its major challenge is the high-dimensional small-sized problem. To deal with this problem, lots of subspace learning (SL) methods are developed to reduce the dimension of the pixels while preserving the important discriminant information. Motivated by ridge linear regression (RLR) framework for SL, we propose a spectral-spatial shared linear regression method (SSSLR) for extracting the feature representation. Comparing with RLR, our proposed SSSLR has the following two advantages. First, we utilize a convex set to explore the spatial structure for computing the linear projection matrix. Second, we utilize a shared structure learning model, which is formed by original data space and a hidden feature space, to learn a more discriminant linear projection matrix for classification. To optimize our proposed method, an efficient iterative algorithm is proposed. Experimental results on two popular HSI data sets, i.e., Indian Pines and Salinas demonstrate that our proposed methods outperform many SL methods.

  12. Quantitative method to assess caries via fluorescence imaging from the perspective of autofluorescence spectral analysis (United States)

    Chen, Q. G.; Zhu, H. H.; Xu, Y.; Lin, B.; Chen, H.


    A quantitative method to discriminate caries lesions for a fluorescence imaging system is proposed in this paper. The autofluorescence spectral investigation of 39 teeth samples classified by the International Caries Detection and Assessment System levels was performed at 405 nm excitation. The major differences in the different caries lesions focused on the relative spectral intensity range of 565-750 nm. The spectral parameter, defined as the ratio of wavebands at 565-750 nm to the whole spectral range, was calculated. The image component ratio R/(G + B) of color components was statistically computed by considering the spectral parameters (e.g. autofluorescence, optical filter, and spectral sensitivity) in our fluorescence color imaging system. Results showed that the spectral parameter and image component ratio presented a linear relation. Therefore, the image component ratio was graded as 1.62 to quantitatively classify sound, early decay, established decay, and severe decay tissues, respectively. Finally, the fluorescence images of caries were experimentally obtained, and the corresponding image component ratio distribution was compared with the classification result. A method to determine the numerical grades of caries using a fluorescence imaging system was proposed. This method can be applied to similar imaging systems.

  13. Spectral images browsing using principal component analysis and set partitioning in hierarchical tree (United States)

    Ma, Long; Zhao, Deping


    Spectral imaging technology have been used mostly in remote sensing, but have recently been extended to new area requiring high fidelity color reproductions like telemedicine, e-commerce, etc. These spectral imaging systems are important because they offer improved color reproduction quality not only for a standard observer under a particular illuminantion, but for any other individual exhibiting normal color vision capability under another illuminantion. A possibility for browsing of the archives is needed. In this paper, the authors present a new spectral image browsing architecture. The architecture for browsing is expressed as follow: (1) The spectral domain of the spectral image is reduced with the PCA transform. As a result of the PCA transform the eigenvectors and the eigenimages are obtained. (2) We quantize the eigenimages with the original bit depth of spectral image (e.g. if spectral image is originally 8bit, then quantize eigenimage to 8bit), and use 32bit floating numbers for the eigenvectors. (3) The first eigenimage is lossless compressed by JPEG-LS, the other eigenimages were lossy compressed by wavelet based SPIHT algorithm. For experimental evalution, the following measures were used. We used PSNR as the measurement for spectral accuracy. And for the evaluation of color reproducibility, ΔE was standard D65 was used as a light source. To test the proposed method, we used FOREST and CORAL spectral image databases contrain 12 and 10 spectral images, respectively. The images were acquired in the range of 403-696nm. The size of the images were 128*128, the number of bands was 40 and the resolution was 8 bits per sample. Our experiments show the proposed compression method is suitable for browsing, i.e., for visual purpose.

  14. The characteristic analysis of spectral image for cabbage leaves damaged by diamondback moth pests (United States)

    Lin, Li-bo; Li, Hong-ning; Cao, Peng-fei; Qin, Feng; Yang, Shu-ming; Feng, Jie


    Cabbage growth and health diagnosis are important parts for cabbage fine planting, spectral imaging technology with the advantages of obtaining spectrum and space information of the target at the same time, which has become a research hotspot at home and abroad. The experiment measures the reflection spectrum at different stages using liquid crystal tunable filter (LCTF) and monochromatic CMOS camera composed of spectral imaging system for cabbage leaves damaged by diamondback moth pests, and analyzes its feature bands and the change of spectral parameters. The study shows that the feature bands of cabbage leaves damaged by diamondback moth pests have a tendency to blue light direction, the red edge towards blue shift, and red valley raising in spectral characteristic parameters, which have a good indication in diagnosing the extent of cabbage damaged by pests. Therefore, it has a unique advantage of monitoring the cabbage leaves damaged by diamondback moth pests by combinating feature bands and spectral characteristic parameters in spectral imaging technology.

  15. Laser-induced fluorescence imaging of subsurface tissue structures with a volume holographic spatial-spectral imaging system. (United States)

    Luo, Yuan; Gelsinger-Austin, Paul J; Watson, Jonathan M; Barbastathis, George; Barton, Jennifer K; Kostuk, Raymond K


    A three-dimensional imaging system incorporating multiplexed holographic gratings to visualize fluorescence tissue structures is presented. Holographic gratings formed in volume recording materials such as a phenanthrenquinone poly(methyl methacrylate) photopolymer have narrowband angular and spectral transmittance filtering properties that enable obtaining spatial-spectral information within an object. We demonstrate this imaging system's ability to obtain multiple depth-resolved fluorescence images simultaneously.

  16. Spectral resolution enhancement of hyperspectral imagery by a multiple-aperture compressive optical imaging system

    Directory of Open Access Journals (Sweden)

    Hoover Fabian Rueda Chacon


    Full Text Available The Coded Aperture Snapshot Spectral Imaging (CASSI system captures the three-dimensional (3D spatio-spectral information of a scene using a set of two-dimensional (2D random-coded Focal Plane Array (FPA measurements. A compressive sensing reconstruc-tion algorithm is then used to recover the underlying spatio-spectral 3D data cube. The quality of the reconstructed spectral images depends exclusively on the CASSI sensing matrix, which is determined by the structure of a set of random coded apertures. In this paper, the CASSI system is generalized by developing a multiple-aperture optical imaging system such that spectral resolution en-hancement is attainable. In the proposed system, a pair of high-resolution coded apertures is introduced into the CASSI system, allow-ing it to encode both spatial and spectral characteristics of the hyperspectral image. This approach allows the reconstruction of super-resolved hyperspectral data cubes, where the number of spectral bands is significantly increased and the quality in the spatial domain is greatly improved. Extensively simulated experiments show a gain in the peak-signal-to-noise ratio (PSNR, along with a better fit of the reconstructed spectral signatures to the original spectral data.

  17. [Influence of human body target's spectral characteristics on visual range of low light level image intensifiers]. (United States)

    Zhang, Jun-Ju; Yang, Wen-Bin; Xu, Hui; Liu, Lei; Tao, Yuan-Yaun


    To study the effect of different human target's spectral reflective characteristic on low light level (LLL) image intensifier's distance, based on the spectral characteristics of the night-sky radiation and the spectral reflective coefficients of common clothes, we established a equation of human body target's spectral reflective distribution, and analyzed the spectral reflective characteristics of different human targets wearing the clothes of different color and different material, and from the actual detection equation of LLL image intensifier distance, discussed the detection capability of LLL image intensifier for different human target. The study shows that the effect of different human target's spectral reflective characteristic on LLL image intensifier distance is mainly reflected in the average reflectivity rho(-) and the initial contrast of the target and the background C0. Reflective coefficient and spectral reflection intensity of cotton clothes are higher than polyester clothes, and detection capability of LLL image intensifier is stronger for the human target wearing cotton clothes. Experimental results show that the LLL image intensifiers have longer visual ranges for targets who wear cotton clothes than targets who wear same color but polyester clothes, and have longer visual ranges for targets who wear light-colored clothes than targets who wear dark-colored clothes. And in the full moon illumination conditions, LLL image intensifiers are more sensitive to the clothes' material.

  18. Statistical iterative material image reconstruction for spectral CT using a semi-empirical forward model (United States)

    Mechlem, Korbinian; Ehn, Sebastian; Sellerer, Thorsten; Pfeiffer, Franz; Noël, Peter B.


    In spectral computed tomography (spectral CT), the additional information about the energy dependence of attenuation coefficients can be exploited to generate material selective images. These images have found applications in various areas such as artifact reduction, quantitative imaging or clinical diagnosis. However, significant noise amplification on material decomposed images remains a fundamental problem of spectral CT. Most spectral CT algorithms separate the process of material decomposition and image reconstruction. Separating these steps is suboptimal because the full statistical information contained in the spectral tomographic measurements cannot be exploited. Statistical iterative reconstruction (SIR) techniques provide an alternative, mathematically elegant approach to obtaining material selective images with improved tradeoffs between noise and resolution. Furthermore, image reconstruction and material decomposition can be performed jointly. This is accomplished by a forward model which directly connects the (expected) spectral projection measurements and the material selective images. To obtain this forward model, detailed knowledge of the different photon energy spectra and the detector response was assumed in previous work. However, accurately determining the spectrum is often difficult in practice. In this work, a new algorithm for statistical iterative material decomposition is presented. It uses a semi-empirical forward model which relies on simple calibration measurements. Furthermore, an efficient optimization algorithm based on separable surrogate functions is employed. This partially negates one of the major shortcomings of SIR, namely high computational cost and long reconstruction times. Numerical simulations and real experiments show strongly improved image quality and reduced statistical bias compared to projection-based material decomposition.

  19. Spectral CT imaging in patients with Budd-Chiari syndrome: investigation of image quality. (United States)

    Su, Lei; Dong, Junqiang; Sun, Qiang; Liu, Jie; Lv, Peijie; Hu, Lili; Yan, Liangliang; Gao, Jianbo


    To assess the image quality of monochromatic imaging from spectral CT in patients with Budd-Chiari syndrome (BCS), fifty patients with BCS underwent spectral CT to generate conventional 140 kVp polychromatic images (group A) and monochromatic images, with energy levels from 40 to 80, 40 + 70, and 50 + 70 keV fusion images (group B) during the portal venous phase (PVP) and the hepatic venous phase (HVP). Two-sample t tests compared vessel-to-liver contrast-to-noise ratio (CNR) and signal-to-noise ratio (SNR) for the portal vein (PV), hepatic vein (HV), inferior vena cava. Readers' subjective evaluations of the image quality were recorded. The highest SNR values in group B were distributed at 50 keV; the highest CNR values in group B were distributed at 40 keV. The higher CNR values and SNR values were obtained though PVP of PV (SNR 18.39 ± 6.13 vs. 10.56 ± 3.31, CNR 7.81 ± 3.40 vs. 3.58 ± 1.31) and HVP of HV (3.89 ± 2.08 vs. 1.27 ± 1.55) in the group B; the lower image noise for group B was at 70 keV and 50 + 70 keV (15.54 ± 8.39 vs. 18.40 ± 4.97, P = 0.0004 and 18.97 ± 7.61 vs. 18.40 ± 4.97, P = 0.0691); the results show that the 50 + 70 keV fusion image quality was better than that in group A. Monochromatic energy levels of 40-70, 40 + 70, and 50 + 70 keV fusion image can increase vascular contrast and that will be helpful for the diagnosis of BCS, we select the 50 + 70 keV fusion image to acquire the best BCS images.

  20. Estimation of a fluorescent lamp spectral distribution for color image in machine vision


    Corzo, Luis Galo; Penaranda, Jose Antonio; Peer, Peter


    We present a technique to quickly estimate the Illumination Spectral Distribution (ISD) in an image illuminated by a fluorescent lamp. It is assumed that the object colors are a set of colors for which spectral reflectances are available (in our experiments we use spectral measurements of 12 colors checker chart), the sensitivities of the camera sensors are known and the camera response is linear. Thus, the ISD can be approximated by a finite linear combinations of a small number of basis fun...

  1. A spatial-spectral approach for deriving high signal quality eigenvectors for remote sensing image transformations

    DEFF Research Database (Denmark)

    Rogge, Derek; Bachmann, Martin; Rivard, Benoit


    Spectral decorrelation (transformations) methods have long been used in remote sensing. Transformation of the image data onto eigenvectors that comprise physically meaningful spectral properties (signal) can be used to reduce the dimensionality of hyperspectral images as the number of spectrally......-line surveys, or temporal data sets as computational burden becomes significant. In this paper we present a spatial-spectral approach to deriving high signal quality eigenvectors for image transformations which possess an inherently ability to reduce the effects of noise. The approach applies a spatial...... and spectral subsampling to the data, which is accomplished by deriving a limited set of eigenvectors for spatially contiguous subsets. These subset eigenvectors are compiled together to form a new noise reduced data set, which is subsequently used to derive a set of global orthogonal eigenvectors. Data from...

  2. Validation of spectral sky radiance derived from all-sky camera images – a case study

    Directory of Open Access Journals (Sweden)

    K. Tohsing


    Full Text Available Spectral sky radiance (380–760 nm is derived from measurements with a hemispherical sky imager (HSI system. The HSI consists of a commercial compact CCD (charge coupled device camera equipped with a fish-eye lens and provides hemispherical sky images in three reference bands such as red, green and blue. To obtain the spectral sky radiance from these images, non-linear regression functions for various sky conditions have been derived. The camera-based spectral sky radiance was validated using spectral sky radiance measured with a CCD spectroradiometer. The spectral sky radiance for complete distribution over the hemisphere between both instruments deviates by less than 20% at 500 nm for all sky conditions and for zenith angles less than 80°. The reconstructed spectra of the wavelengths 380–760 nm between both instruments at various directions deviate by less than 20% for all sky conditions.

  3. Color reproduction of human skin by spectral reflectance using RGB images and the Wiener estimation method (United States)

    Sato, Kiyomi; Miyazawa, Shota; Funamizu, Hideki; Yuasa, Tomonori; Nishidate, Izumi; Aizu, Yoshihisa


    Skin measurements based on spectral reflectance are widely studied in the fields of medical care and cosmetics. It has the advantage that several skin properties can be estimated in the non-invasive and non-contacting manner. In this study, we demonstrate the color reproduction of human skin by spectral reflectance using RGB images and the Wiener estimation method.

  4. Spectral CT imaging of vulnerable plaque with two independent biomarkers (United States)

    Baturin, Pavlo; Alivov, Yahya; Molloi, Sabee


    The purpose of this paper is to investigate the feasibility of a novel four-material decomposition technique for assessing the vulnerability of plaque with two contrast materials spectral computer tomography (CT) using two independent markers: plaque's inflammation and spotty calcification. A simulation study was conducted using an energy-sensitive photon-counting detector for k-edge imaging of the coronary arteries. In addition to detecting the inflammation status, which is known as a biological marker of a plaque's vulnerability, we use spotty calcium concentration as an independent marker to test a plaque's vulnerability. We have introduced a new method for detecting and quantifying calcium concentrations in the presence of two contrast materials (iodine and gold), calcium and soft tissue background. In this method, four-material decomposition was performed on a pixel-by-pixel basis, assuming there was an arbitrary mixture of materials in the voxel. The concentrations of iodine and gold were determined by the k-edge material decomposition based on the maximum likelihood method. The calibration curves of the attenuation coefficients, with respect to the concentrations of different materials, were used to separate the calcium signal from both contrast materials and different soft tissues in the mixtures. Three different materials (muscle, blood and lipid) were independently used as soft tissue. The simulations included both ideal and more realistic energy resolving detectors to measure the polychromatic photon spectrum in single slice parallel beam geometry. The ideal detector was used together with a 3 cm diameter digital phantom to demonstrate the decomposition method while a more realistic detector and a 33 × 24 cm2 digital chest phantom were simulated to validate the vulnerability assessment technique. A 120 kVp spectrum was generated to produce photon flux sufficient for detecting contrast materials above the k-edges of iodine (33.2 keV) and gold (80.7 ke

  5. TICMR: Total Image Constrained Material Reconstruction via Nonlocal Total Variation Regularization for Spectral CT. (United States)

    Liu, Jiulong; Ding, Huanjun; Molloi, Sabee; Zhang, Xiaoqun; Gao, Hao


    This work develops a material reconstruction method for spectral CT, namely Total Image Constrained Material Reconstruction (TICMR), to maximize the utility of projection data in terms of both spectral information and high signal-to-noise ratio (SNR). This is motivated by the following fact: when viewed as a spectrally-integrated measurement, the projection data can be used to reconstruct a total image without spectral information, which however has a relatively high SNR; when viewed as a spectrally-resolved measurement, the projection data can be utilized to reconstruct the material composition, which however has a relatively low SNR. The material reconstruction synergizes material decomposition and image reconstruction, i.e., the direct reconstruction of material compositions instead of a two-step procedure that first reconstructs images and then decomposes images. For material reconstruction with high SNR, we propose TICMR with nonlocal total variation (NLTV) regularization. That is, first we reconstruct a total image using spectrally-integrated measurement without spectral binning, and build the NLTV weights from this image that characterize nonlocal image features; then the NLTV weights are incorporated into a NLTV-based iterative material reconstruction scheme using spectrally-binned projection data, so that these weights serve as a high-SNR reference to regularize material reconstruction. Note that the nonlocal property of NLTV is essential for material reconstruction, since material compositions may have significant local intensity variations although their structural information is often similar. In terms of solution algorithm, TICMR is formulated as an iterative reconstruction method with the NLTV regularization, in which the nonlocal divergence is utilized based on the adjoint relationship. The alternating direction method of multipliers is developed to solve this sparsity optimization problem. The proposed TICMR method was validated using both simulated

  6. Ratiometric spectral imaging for fast tumor detection and chemotherapy monitoring in vivo (United States)

    Hwang, Jae Youn; Gross, Zeev; Gray, Harry B.; Medina-Kauwe, Lali K.; Farkas, Daniel L.


    We report a novel in vivo spectral imaging approach to cancer detection and chemotherapy assessment. We describe and characterize a ratiometric spectral imaging and analysis method and evaluate its performance for tumor detection and delineation by quantitatively monitoring the specific accumulation of targeted gallium corrole (HerGa) into HER2-positive (HER2 +) breast tumors. HerGa temporal accumulation in nude mice bearing HER2 + breast tumors was monitored comparatively by a. this new ratiometric imaging and analysis method; b. established (reflectance and fluorescence) spectral imaging; c. more commonly used fluorescence intensity imaging. We also tested the feasibility of HerGa imaging in vivo using the ratiometric spectral imaging method for tumor detection and delineation. Our results show that the new method not only provides better quantitative information than typical spectral imaging, but also better specificity than standard fluorescence intensity imaging, thus allowing enhanced in vivo outlining of tumors and dynamic, quantitative monitoring of targeted chemotherapy agent accumulation into them. PMID:21721808

  7. Local spectral adaptive multitaper method with bilateral filtering for spectrum analysis of mammographic images (United States)

    Wu, Gang; Mainprize, James G.; Yaffe, Martin J.


    Estimation of the image power spectrum is fundamental to the development of a figure of merit for image performance analysis. We are investigating a new multitaper approach to determine power spectra, which provides a combination of low variance and high spectral resolution in the frequency range of interest. To further reduce the variance, the spectrum estimated by the proposed Local Spectral Adaptive Multitaper Method (LSAMTM) is subsequently smoothed in the frequency domain by bilateral filtering, while keeping the spectral resolution intact. This tool will be especially valuable in power spectrum estimation of images that deviate significantly from uniform white noise. The performance of this approach was evaluated in terms of spectral stability, variance reduction, bias and frequency precision. It was also compared to the conventional power spectrum method in several typical situations, including the noise power spectra (NPS) measurements of simulated projection images of a uniform phantom and NPS measurement of real detector images of a uniform phantom for two clinical digital mammography systems. Examination of variance reduction versus spectral resolution and bias indicates that the LSAMTM with bilateral filtering technique is superior to the conventional estimation methods in variance reduction, spectral resolution and in the prevention of spectrum leakage. It has the ability to keep both low variance and narrow spectral linewidth in the frequency range of interest. Up to 87% more variance reduction can be achieved with proper filtration and no sacrifice of frequency precision has been observed.

  8. A Spectral Signature Shape-Based Algorithm for Landsat Image Classification

    Directory of Open Access Journals (Sweden)

    Yuanyuan Chen


    Full Text Available Land-cover datasets are crucial for earth system modeling and human-nature interaction research at local, regional and global scales. They can be obtained from remotely sensed data using image classification methods. However, in processes of image classification, spectral values have received considerable attention for most classification methods, while the spectral curve shape has seldom been used because it is difficult to be quantified. This study presents a classification method based on the observation that the spectral curve is composed of segments and certain extreme values. The presented classification method quantifies the spectral curve shape and takes full use of the spectral shape differences among land covers to classify remotely sensed images. Using this method, classification maps from TM (Thematic mapper data were obtained with an overall accuracy of 0.834 and 0.854 for two respective test areas. The approach presented in this paper, which differs from previous image classification methods that were mostly concerned with spectral “value” similarity characteristics, emphasizes the "shape" similarity characteristics of the spectral curve. Moreover, this study will be helpful for classification research on hyperspectral and multi-temporal images.

  9. Conjugate Etalon Spectral Imager (CESI) & Scanning Etalon Methane Mapper (SEMM) Project (United States)

    National Aeronautics and Space Administration — Development of the CESI focal plane and optics technology will lead to miniaturized hyperspectral and SWIR-band spectral imaging instrumentation compatible with...

  10. Intelligent spectral signature bio-imaging in vivo for surgical applications (United States)

    Jeong, Jihoon; Frykman, Philip K.; Gaon, Mark; Chung, Alice P.; Lindsley, Erik H.; Hwang, Jae Y.; Farkas, Daniel L.


    Multi-spectral imaging provides digital images of a scene or object at a large, usually sequential number of wavelengths, generating precise optical spectra at every pixel. We use the term "spectral signature" for a quantitative plot of optical property variations as a function of wavelengths. We present here intelligent spectral signature bio-imaging methods we developed, including automatic signature selection based on machine learning algorithms and database search-based automatic color allocations, and selected visualization schemes matching these approaches. Using this intelligent spectral signature bio-imaging method, we could discriminate normal and aganglionic colon tissue of the Hirschsprung's disease mouse model with over 95% sensitivity and specificity in various similarity measure methods and various anatomic organs such as parathyroid gland, thyroid gland and pre-tracheal fat in dissected neck of the rat in vivo.

  11. Interactive Machine Learning for Discovering Patterns in Spectral Data and Images (United States)

    Oyen, D. A.; Lanza, N. L.


    We balance the strengths of machine learning to perform pattern recognition, while empowering scientists to explore large sets of data. We demonstrate two such approaches for (1) ChemCam spectral data, and (2) interactive image analysis.

  12. High Spectral Resolution, High Cadence, Imaging X-ray Microcalorimeters for Solar Physics - Phase 2 Project (United States)

    National Aeronautics and Space Administration — Microcalorimeter x-ray instruments are non-dispersive, high spectral resolution, broad-band, high cadence imaging spectrometers. We have been developing these...

  13. Reliability of confocal microscopy spectral imaging systems: use of multispectral beads. (United States)

    Zucker, Robert M; Rigby, Paul; Clements, Ian; Salmon, Wendy; Chua, Michael


    There is a need for a standardized, impartial calibration, and validation protocol on confocal spectral imaging (CSI) microscope systems. To achieve this goal, it is necessary to have testing tools to provide a reproducible way to evaluate instrument performance. We evaluated fluorescent spectral beads (FocalCheck) from Molecular Probes/Invitrogen that consist of four pairs with emissions between 500 and 725 nm and a europium macrocycle quantum dye bead. These bead tools compliment our previously published protocol for testing spectral imaging systems that used an inexpensive multi-ion discharge lamp (MIDL) that contains Hg(+), Ar(+), and inorganic fluorophores that emits distinct, stable spectral features. We acquired the spectra of the FocalCheck beads on a Zeiss 510 Meta, a Leica TCS-SP1, a Leica SP2 AOBS, an Olympus FV 1000, and a Nikon C1Si confocal systems and a PARISS microscopic spectral system and of the europium beads on the Leica TCS-SP1 and PARISS spectral imaging systems. A lack of performance with some equipment between 650 and 750 nm was identified using the far red pair of the FocalCheck beads. The position of the slider in front of PMT 2 that reflects light into PMT 1 and PMT 3 affected the measurement of all bead intensities. Unmixing algorithms were used to separate beads with different fluorochromes and separate two fluorochromes on the same bead. The FocalCheck multi-spectral beads yielded similar profiles on four CSI systems and a PARISS spectral system. The utilization of the spectral FocalCheck beads is helpful to evaluate proper spectral performance, especially in the far red region. Europium beads provide a very narrow spectrum that can help to identify machines that have spectral problems. The dyes located on individual beads or mixed together in ring-core configuration can be used as test particles to demonstrate spectral unmixing with various algorithms.

  14. Depth Modeling With Spectral Selective Region Coding For Image Inpainting (United States)

    Balasaheb Patil Mr., H.; Pradeep Patil, M., Dr.


    Image inpainting, has an evolving approach for image quality enhancement and image visualization. In the process of image inpainting, pixels of similar area variants are considered in a tracing manner to achieve the objectives of unwanted image coefficient which are introduced due to detritions in image handing. To overcome this issue, images are processed in spatial domain, where, images are traced using 8-neighbor region growing method to achieve the objective of image enhancement However, in such approach, the pixel variations are observed in one variation plane. The variation with respect to successive pixel variants is not observed. To develop a new coding in considering with multiple domains, in this paper a new inpainting approach based on image depth coding is suggested.

  15. Fast, versatile, and non-destructive biscuit inspection system using spectral imaging

    DEFF Research Database (Denmark)

    Carstensen, Jens Michael


    A fast, versatile, and non-destructive method for assessing biscuit quality is presented. The method integrates color (or browning) measurement, moisture assessment, compositional and dimensional measurements on a spectral imaging platform using the silicon range 400–1000 nm.......A fast, versatile, and non-destructive method for assessing biscuit quality is presented. The method integrates color (or browning) measurement, moisture assessment, compositional and dimensional measurements on a spectral imaging platform using the silicon range 400–1000 nm....

  16. Segmentation of cDNA Microarray Images using Parallel Spectral Clustering

    Directory of Open Access Journals (Sweden)

    Daniel RUIZ


    Full Text Available Microarray technology generates large amounts of expression level of genes to be analyzed simultaneously. This analysis implies microarray image segmentation to extract the quantitative information from spots. Spectral clustering is one of the most relevant unsupervised methods able to gather data without a priori information on shapes or locality. We propose and test on microarray images a parallel strategy for the Spectral Clustering method based on domain decomposition with a criterion to determine the number of clusters.

  17. High-speed Vibrational Imaging and Spectral Analysis of Lipid Bodies by Compound Raman Microscopy


    Slipchenko, Mikhail N.; Le, Thuc T.; Chen, Hongtao; Cheng, Ji-Xin


    Cells store excess energy in the form of cytoplasmic lipid droplets. At present, it is unclear how different types of fatty acids contribute to the formation of lipid-droplets. We describe a compound Raman microscope capable of both high-speed chemical imaging and quantitative spectral analysis on the same platform. We use a picosecond laser source to perform coherent Raman scattering imaging of a biological sample and confocal Raman spectral analysis at points of interest. The potential of t...

  18. Spectral properties and dynamics of gold nanorods revealed by EMCCD-based spectral phasor method. (United States)

    Chen, Hongtao; Gratton, Enrico; Digman, Michelle A


    Gold nanorods (NRs) with tunable plasmon-resonant absorption in the near-infrared region have considerable advantages over organic fluorophores as imaging agents due to their brightness and lack of photobleaching. However, the luminescence spectral properties of NRs have not been fully characterized at the single particle level due to lack of proper analytic tools. Here, we present a spectral phasor analysis method that allows investigations of NRs' spectra at single particle level showing the spectral variance and providing spatial information during imaging. The broad phasor distribution obtained by the spectral phasor analysis indicates that spectra of NRs are different from particle to particle. NRs with different spectra can be identified in images with high spectral resolution. The spectral behaviors of NRs under different imaging conditions, for example, different excitation powers and wavelengths, were revealed by our laser-scanning multiphoton microscope using a high-resolution spectrograph with imaging capability. Our results prove that the spectral phasor method is an easy and efficient tool in hyper-spectral imaging analysis to unravel subtle changes of the emission spectrum. We applied this method to study the spectral dynamics of NRs during direct optical trapping and by optothermal trapping. Interestingly, different spectral shifts were observed in both trapping phenomena. © 2015 Wiley Periodicals, Inc.

  19. Spectral Properties and Dynamics of Gold Nanorods Revealed by EMCCD Based Spectral-Phasor Method (United States)

    Chen, Hongtao; Digman, Michelle A.


    Gold nanorods (NRs) with tunable plasmon-resonant absorption in the near-infrared region have considerable advantages over organic fluorophores as imaging agents. However, the luminescence spectral properties of NRs have not been fully explored at the single particle level in bulk due to lack of proper analytic tools. Here we present a global spectral phasor analysis method which allows investigations of NRs' spectra at single particle level with their statistic behavior and spatial information during imaging. The wide phasor distribution obtained by the spectral phasor analysis indicates spectra of NRs are different from particle to particle. NRs with different spectra can be identified graphically in corresponding spatial images with high spectral resolution. Furthermore, spectral behaviors of NRs under different imaging conditions, e.g. different excitation powers and wavelengths, were carefully examined by our laser-scanning multiphoton microscope with spectral imaging capability. Our results prove that the spectral phasor method is an easy and efficient tool in hyper-spectral imaging analysis to unravel subtle changes of the emission spectrum. Moreover, we applied this method to study the spectral dynamics of NRs during direct optical trapping and by optothermal trapping. Interestingly, spectral shifts were observed in both trapping phenomena. PMID:25684346

  20. HYPER system design study

    Energy Technology Data Exchange (ETDEWEB)

    Park, Won S.; Han, Seok J.; Song, Tae Y. [Korea Atomic Energy Research Institute, Taejon (Korea)


    KAERI is developing ADS, named HYPER for the transmutation of nuclear waste. HYPER is designed to produce 1000 MWth with the subcriticality of 0.97. HYPER adopts a hollow cylinder type metal fuel and require 1.0GeV, 16mA proton beams. Pb-Bi is used as coolant and the inlet and outlet temperatures are 340 deg C, 510 deg C, respectively. In addition, Pb-Bi coolant is used as spallation target also. HYPER is expected to incinerate about 380 kg of TRU a year, which is corresponding to the support ratio 5 {approx} 6. 23 refs., 50 figs., 31 tabs. (Author)

  1. Spectral Imaging of Multi-Color Chromogenic Dyes in Pathological Specimens

    Directory of Open Access Journals (Sweden)

    Merryn V. E. Macville


    Full Text Available We have investigated the use of spectral imaging for multi‐color analysis of permanent cytochemical dyes and enzyme precipitates on cytopathological specimens. Spectral imaging is based on Fourier‐transform spectroscopy and digital imaging. A pixel‐by‐pixel spectrum‐based color classification is presented of single‐, double‐, and triple‐color in situ hybridization for centromeric probes in T24 bladder cancer cells, and immunocytochemical staining of nuclear antigens Ki‐67 and TP53 in paraffin‐embedded cervical brush material (AgarCyto. The results demonstrate that spectral imaging unambiguously identifies three chromogenic dyes in a single bright‐field microscopic specimen. Serial microscopic fields from the same specimen can be analyzed using a spectral reference library. We conclude that spectral imaging of multi‐color chromogenic dyes is a reliable and robust method for pixel color recognition and classification. Our data further indicate that the use of spectral imaging (a may increase the number of parameters studied simultaneously in pathological diagnosis, (b may provide quantitative data (such as positive labeling indices more accurately, and (c may solve segmentation problems currently faced in automated screening of cell‐ and tissue specimens. Figures on‐3/macville.htm.

  2. Implementation of a multi-spectral color imaging device without color filter array (United States)

    Langfelder, G.; Longoni, A. F.; Zaraga, F.


    In this work the use of the Transverse Field Detector (TFD) as a device for multispectral image acquisition is proposed. The TFD is a color imaging pixel capable of color reconstruction without color filters. Its basic working principle is based on the generation of a suitable electric field configuration inside a Silicon depleted region by means of biasing voltages applied to surface contacts. With respect to previously proposed methods for performing multispectral capture, the TFD has a unique characteristic of electrically tunable spectral responses. This feature allows capturing an image with different sets of spectral responses (RGB, R'G'B', and so on) simply by tuning the device biasing voltages in multiple captures. In this way no hardware complexity (no external filter wheels or varying sources) is added with respect to a colorimetric device. The estimation of the spectral reflectance of the area imaged by a TFD pixel is based in this work on a linear combination of six eigenfunctions. It is shown that a spectral reconstruction can be obtained either (1) using two subsequent image captures that generate six TFD spectral responses or (2) using a new asymmetric biasing scheme, which allows the implementation of five spectral responses for each TFD pixel site in a single configuration, definitely allowing one-shot multispectral imaging.

  3. Self-assembled Tunable Photonic Hyper-crystals (United States)


    a cobalt nanoparticle-based ferrofluid . Unique spectral properties of photonic hyper-crystals lead to extreme sensitivity of the material to...assembly of photonic hyper crystals has been achieved by application of external magnetic field to a cobalt nanoparticle based ferrofluid . Unique SCIENTIFIC REPORTS | 4 : 5706 | DOI: 10.1038/srep05706 1 4 Figure 1 | (A) Experimental geometry of the ferrofluid based hyperbolic

  4. Application of a partial least-squares regression model to retrieve chlorophyll- a concentrations in coastal waters using hyper-spectral data (United States)

    Ryan, Kimberly; Ali, Khalid


    Coastal and inland waters represent a diverse set of resources that support natural habitats and provide valuable ecosystem services to the human population. Monitoring the quality of these waters is essential to maintaining the resources they provide, and long-term monitoring may offer a better understanding of the relationship between human development and the health of these resource producers. The implementation of conventional monitoring is typically time-intensive and limited in geographic scale. Alternatively, the use of airborne and spaceborne remote sensors provides a synoptic view of water quality with better spatial coverage to more accurately identify dynamic and unique parameters. Concentrations of optically active constituents (OACs) such as suspended sediments and the phytoplankton pigment chlorophylla (CHL a), act as proxies for water quality and can be detected by optical sensors. Traditional remote sensing techniques were developed using multispectral sensors, and employ band ratio algorithms that seek to predict the concentrations of OACs in relation to water quality. In complex coastal waters, overlapping spectral signatures of OACs often confound these algorithms and reduce their predictive capacity. The objective of this study was to develop a dataset to test the predictive capabilities of partial least-squares regression, a multivariate statistical method, for hyperspectral remote sensing and in situ CHL a concentrations. This paper presents the model performance for a dataset developed in Long Bay, a ~160 km arcuate bay that spans the border between North and South Carolina. The model uses multivariate-based statistical modeling to capitalize on the spectral advantage gained by hyperspectral sensors when observing such waters. Following this approach, a multivariate-based monitoring tool for the prediction of CHL a concentrations is presented with a partial least-squares regression (PLSR) method using hyperspectral and laboratory

  5. Spectral feature variations in x-ray diffraction imaging systems (United States)

    Wolter, Scott D.; Greenberg, Joel A.


    Materials with different atomic or molecular structures give rise to unique scatter spectra when measured by X-ray diffraction. The details of these spectra, though, can vary based on both intrinsic (e.g., degree of crystallinity or doping) and extrinsic (e.g., pressure or temperature) conditions. While this sensitivity is useful for detailed characterizations of the material properties, these dependences make it difficult to perform more general classification tasks, such as explosives threat detection in aviation security. A number of challenges, therefore, currently exist for reliable substance detection including the similarity in spectral features among some categories of materials combined with spectral feature variations from materials processing and environmental factors. These factors complicate the creation of a material dictionary and the implementation of conventional classification and detection algorithms. Herein, we report on two prominent factors that lead to variations in spectral features: crystalline texture and temperature variations. Spectral feature comparisons between materials categories will be described for solid metallic sheet, aqueous liquids, polymer sheet, and metallic, organic, and inorganic powder specimens. While liquids are largely immune to texture effects, they are susceptible to temperature changes that can modify their density or produce phase changes. We will describe in situ temperature-dependent measurement of aqueous-based commercial goods in the temperature range of -20°C to 35°C.

  6. Spectral matching consideration in the design of a novel x-ray image intensifier (United States)

    Yu, Chunyu; Chang, Benkang; Wei, Dianxiu


    In this article, a novel x-ray image intensifier is introduced. It is mainly composed of an x-ray intensifying screen and a low-light-level (L3) image intensifier. In order to obtain a bright enough image, the spectral compatibility among three different combinations of the x-ray intensifying screen and the photocathode is analyzed. The comparison indicates that a (Zn,Cd)S:Ag screen is superior to either a CaWO4 screen or a Gd2O2S :Tb screen when combined with the Super S25 photocathode and spectral compatibility analysis is a useful guide when designing an optoelectronic imaging device.

  7. Spectral compression algorithms for the analysis of very large multivariate images (United States)

    Keenan, Michael R.


    A method for spectrally compressing data sets enables the efficient analysis of very large multivariate images. The spectral compression algorithm uses a factored representation of the data that can be obtained from Principal Components Analysis or other factorization technique. Furthermore, a block algorithm can be used for performing common operations more efficiently. An image analysis can be performed on the factored representation of the data, using only the most significant factors. The spectral compression algorithm can be combined with a spatial compression algorithm to provide further computational efficiencies.

  8. Study on spectral calibration of an ultraviolet Fourier transform imaging spectrometer with high precision (United States)

    Yang, Wenming; Liao, Ningfang; Cheng, Haobo; Li, Yasheng; Bai, Xueqiong; Deng, Chengyang


    In this paper, we reported the laboratory spectral calibration of an ultraviolet (UV) Fourier transform imaging spectrometer (FTIS). A short overview of the designed UV-FTIS, which feature with a Cassegrain objective, an Offner relay optics system and a spatial-and-temporal modulation Michelson structure, is given. The experimental setup of spectral calibration is described, including details of the light source and integrating sphere. A high pressure mercury lamp was used to acquire reference spectrum. We calculated the all optical path difference (OPD) to achieve spectral response of every wavelength sample and divided the position of reference peak to subpixel to increase the precision of spectral calibration. The spectrum of spectral calibration show two weakly responded peaks, which was validated by reference spectrum of fiber optic spectrometer. The deviation of wavelength calibration is low to establish a best spectrometer resolution. The results of spectral calibration can meet the requirements of the UV-FTIS application.

  9. Spectrally resolved imaging of Cabot rings and Howell-Jolly bodies. (United States)

    Rothmann, C; Malik, Z; Cohen, A M


    The spectral characteristics of erythropoietic cellular inclusions stained by May-Grunwald Giemsa (MGG) were determined by spectrally resolved imaging. Multipixel spectra were obtained from Cabot rings and Howell-Jolly (HJ) bodies, displaying a range of wavelengths of transmitted light. The spectral characteristics of these inclusions were compared with those of isolated DNA, histones (type II) and arginine-rich histones (type VI), all stained by MGG. Results of single-cell spectroscopy show that the spectra of Cabot rings and HJ bodies share spectral characteristics with the type II and type VI histones. However, no resemblance was found between Cabot rings and DNA spectra. The spectral analysis of heterochromatin displayed a spectral pattern with characteristics of both DNA and histones, while the euchromatin showed a major contribution of the DNA component.

  10. Stepwise method based on Wiener estimation for spectral reconstruction in spectroscopic Raman imaging. (United States)

    Chen, Shuo; Wang, Gang; Cui, Xiaoyu; Liu, Quan


    Raman spectroscopy has demonstrated great potential in biomedical applications. However, spectroscopic Raman imaging is limited in the investigation of fast changing phenomena because of slow data acquisition. Our previous studies have indicated that spectroscopic Raman imaging can be significantly sped up using the approach of narrow-band imaging followed by spectral reconstruction. A multi-channel system was built to demonstrate the feasibility of fast wide-field spectroscopic Raman imaging using the approach of simultaneous narrow-band image acquisition followed by spectral reconstruction based on Wiener estimation in phantoms. To further improve the accuracy of reconstructed Raman spectra, we propose a stepwise spectral reconstruction method in this study, which can be combined with the earlier developed sequential weighted Wiener estimation to improve spectral reconstruction accuracy. The stepwise spectral reconstruction method first reconstructs the fluorescence background spectrum from narrow-band measurements and then the pure Raman narrow-band measurements can be estimated by subtracting the estimated fluorescence background from the overall narrow-band measurements. Thereafter, the pure Raman spectrum can be reconstructed from the estimated pure Raman narrow-band measurements. The result indicates that the stepwise spectral reconstruction method can improve spectral reconstruction accuracy significantly when combined with sequential weighted Wiener estimation, compared with the traditional Wiener estimation. In addition, qualitatively accurate cell Raman spectra were successfully reconstructed using the stepwise spectral reconstruction method from the narrow-band measurements acquired by a four-channel wide-field Raman spectroscopic imaging system. This method can potentially facilitate the adoption of spectroscopic Raman imaging to the investigation of fast changing phenomena.

  11. Visible spectral imager for occultation and nightglow (VISION) for the PICASSO Mission (United States)

    Saari, Heikki; Näsilä, Antti; Holmlund, Christer; Mannila, Rami; Näkki, Ismo; Ojanen, Harri J.; Fussen, Didier; Pieroux, Didier; Demoulin, Philippe; Dekemper, Emmanuel; Vanhellemont, Filip


    PICASSO - A PICo-satellite for Atmospheric and Space Science Observations is an ESA project led by the Belgian Institute for Space Aeronomy, in collaboration with VTT, Clyde Space Ltd. (UK), and the Centre Spatial de Liège (BE). VTT Technical Research Centre of Finland Ltd. will deliver the Visible Spectral Imager for Occultation and Nightglow (VISION) for the PICASSO mission. The VISION targets primarily the observation of the Earth's atmospheric limb during orbital Sun occultation. By assessing the radiation absorption in the Chappuis band for different tangent altitudes, the vertical profile of the ozone is retrieved. A secondary objective is to measure the deformation of the solar disk so that stratospheric and mesospheric temperature profiles are retrieved by inversion of the refractive raytracing problem. Finally, occasional full spectral observations of polar auroras are also foreseen. The VISION design realized with commercial of the shelf (CoTS) parts is described. The VISION instrument is small, lightweight (~500 g), Piezo-actuated Fabry-Perot Interferometer (PFPI) tunable spectral imager operating in the visible and near-infrared (430 - 800 nm). The spectral resolution over the whole wavelength range will be better than 10 nm @ FWHM. VISION has is 2.5° x 2.5° total field of view and it delivers maximum 2048 x 2048 pixel spectral images. The sun image size is around 0.5° i.e. ~500 pixels. To enable fast spectral data image acquisition VISION can be operated with programmable image sizes. VTT has previously developed PFPI tunable filter based AaSI Spectral Imager for the Aalto-1 Finnish CubeSat. In VISION the requirements of the spectral resolution and stability are tighter than in AaSI. Therefore the optimization of the of the PFPI gap control loop for the operating temperature range and vacuum conditions has to be improved. VISION optical, mechanical and electrical design is described.

  12. Can spectral-spatial image segmentation be used to discriminate experimental burn wounds? (United States)

    Paluchowski, Lukasz A.; Nordgaard, Håvard B.; Bjorgan, Asgeir; Hov, Håkon; Berget, Sissel M.; Randeberg, Lise L.


    Hyperspectral imaging (HSI) is a noncontact and noninvasive optical modality emerging the field of medical research. The goal of this study was to determine the ability of HSI and image segmentation to discriminate burn wounds in a preclinical porcine model. A heated brass rod was used to introduce burn wounds of graded severity in a pig model and a sequence of hyperspectral data was recorded up to 8-h postinjury. The hyperspectral images were processed by an unsupervised spectral-spatial segmentation algorithm. Segmentation was validated using results from histology. The proposed algorithm was compared to K-means segmentation and was found superior. The obtained segmentation maps revealed separated zones within the burn sites, indicating a variation in burn severity. The suggested image-processing scheme allowed mapping dynamic changes of spectral properties within the burn wounds over time. The results of this study indicate that unsupervised spectral-spatial segmentation applied on hyperspectral images can discriminate burn injuries of varying severity.

  13. Hyperspectral remote sensing image retrieval system using spectral and texture features. (United States)

    Zhang, Jing; Geng, Wenhao; Liang, Xi; Li, Jiafeng; Zhuo, Li; Zhou, Qianlan


    Although many content-based image retrieval systems have been developed, few studies have focused on hyperspectral remote sensing images. In this paper, a hyperspectral remote sensing image retrieval system based on spectral and texture features is proposed. The main contributions are fourfold: (1) considering the "mixed pixel" in the hyperspectral image, endmembers as spectral features are extracted by an improved automatic pixel purity index algorithm, then the texture features are extracted with the gray level co-occurrence matrix; (2) similarity measurement is designed for the hyperspectral remote sensing image retrieval system, in which the similarity of spectral features is measured with the spectral information divergence and spectral angle match mixed measurement and in which the similarity of textural features is measured with Euclidean distance; (3) considering the limited ability of the human visual system, the retrieval results are returned after synthesizing true color images based on the hyperspectral image characteristics; (4) the retrieval results are optimized by adjusting the feature weights of similarity measurements according to the user's relevance feedback. The experimental results on NASA data sets can show that our system can achieve comparable superior retrieval performance to existing hyperspectral analysis schemes.

  14. Biomedical Applications of the Information-efficient Spectral Imaging Sensor (ISIS)

    Energy Technology Data Exchange (ETDEWEB)

    Gentry, S.M.; Levenson, R.


    The Information-efficient Spectral Imaging Sensor (ISIS) approach to spectral imaging seeks to bridge the gap between tuned multispectral and fixed hyperspectral imaging sensors. By allowing the definition of completely general spectral filter functions, truly optimal measurements can be made for a given task. These optimal measurements significantly improve signal-to-noise ratio (SNR) and speed, minimize data volume and data rate, while preserving classification accuracy. The following paper investigates the application of the ISIS sensing approach in two sample biomedical applications: prostate and colon cancer screening. It is shown that in these applications, two to three optimal measurements are sufficient to capture the majority of classification information for critical sample constituents. In the prostate cancer example, the optimal measurements allow 8% relative improvement in classification accuracy of critical cell constituents over a red, green, blue (RGB) sensor. In the colon cancer example, use of optimal measurements boost the classification accuracy of critical cell constituents by 28% relative to the RGB sensor. In both cases, optimal measurements match the performance achieved by the entire hyperspectral data set. The paper concludes that an ISIS style spectral imager can acquire these optimal spectral images directly, allowing improved classification accuracy over an RGB sensor. Compared to a hyperspectral sensor, the ISIS approach can achieve similar classification accuracy using a significantly lower number of spectral samples, thus minimizing overall sample classification time and cost.

  15. Dual illumination for cornea and retina imaging using spectral domain optical coherence tomography (United States)

    Shirazi, Muhammad Faizan; Wijesinghe, Ruchire Eranga; Ravichandran, Naresh Kumar; Jeon, Mansik; Kim, Jeehyun


    A dual illumination system is proposed for cornea and retina imaging using spectral domain optical coherence tomography (SD-OCT). The system is designed to acquire cornea and retina imaging with dual illumination with limited optics and using a single spectrometer. The beam propagation for cornea and retina imaging in dual illumination enables to acquire the images of different segments. This approach will reduce the imaging time for separate corneal and retinal imaging. The in vivo imaging of both the cornea and retina of a health volunteer shows the feasibility of the system for clinical applications

  16. Simultaneous Multicolor Single-Molecule Tracking with Single-Laser Excitation via Spectral Imaging. (United States)

    Huang, Tao; Phelps, Carey; Wang, Jing; Lin, Li-Jung; Bittel, Amy; Scott, Zubenelgenubi; Jacques, Steven; Gibbs, Summer L; Gray, Joe W; Nan, Xiaolin


    Single-molecule tracking (SMT) offers rich information on the dynamics of underlying biological processes, but multicolor SMT has been challenging due to spectral cross talk and a need for multiple laser excitations. Here, we describe a single-molecule spectral imaging approach for live-cell tracking of multiple fluorescent species at once using a single-laser excitation. Fluorescence signals from all the molecules in the field of view are collected using a single objective and split between positional and spectral channels. Images of the same molecule in the two channels are then combined to determine both the location and the identity of the molecule. The single-objective configuration of our approach allows for flexible sample geometry and the use of a live-cell incubation chamber required for live-cell SMT. Despite a lower photon yield, we achieve excellent spatial (20-40 nm) and spectral (10-15 nm) resolutions comparable to those obtained with dual-objective, spectrally resolved Stochastic Optical Reconstruction Microscopy. Furthermore, motions of the fluorescent molecules did not cause loss of spectral resolution owing to the dual-channel spectral calibration. We demonstrate SMT in three (and potentially more) colors using spectrally proximal fluorophores and single-laser excitation, and show that trajectories of each species can be reliably extracted with minimal cross talk. Copyright © 2017 Biophysical Society. Published by Elsevier Inc. All rights reserved.

  17. Superpixel segmentation and pigment identification of colored relics based on visible spectral image. (United States)

    Li, Junfeng; Wan, Xiaoxia


    To enrich the contents of digital archive and to guide the copy and restoration of colored relics, non-invasive methods for extraction of painting boundary and identification of pigment composition are proposed in this study based on the visible spectral images of colored relics. Superpixel concept is applied for the first time to the field of oversegmentation of visible spectral images and implemented on the visible spectral images of colored relics to extract their painting boundary. Since different pigments are characterized by their own spectrum and the same kind of pigment has the similar geometric profile in spectrum, an automatic identification method is established by comparing the proximity between the geometric profiles of the unknown spectrum from each superpixel and the pre-known spectrum from a deliberately prepared database. The methods are validated using the visible spectral images of the ancient wall paintings in Mogao Grottoes. By the way, the visible spectral images are captured by a multispectral imaging system consisting of two broadband filters and a RGB camera with high spatial resolution. Copyright © 2017 Elsevier B.V. All rights reserved.

  18. Superpixel segmentation and pigment identification of colored relics based on visible spectral image (United States)

    Li, Junfeng; Wan, Xiaoxia


    To enrich the contents of digital archive and to guide the copy and restoration of colored relics, non-invasive methods for extraction of painting boundary and identification of pigment composition are proposed in this study based on the visible spectral images of colored relics. Superpixel concept is applied for the first time to the field of oversegmentation of visible spectral images and implemented on the visible spectral images of colored relics to extract their painting boundary. Since different pigments are characterized by their own spectrum and the same kind of pigment has the similar geometric profile in spectrum, an automatic identification method is established by comparing the proximity between the geometric profiles of the unknown spectrum from each superpixel and the pre-known spectrum from a deliberately prepared database. The methods are validated using the visible spectral images of the ancient wall paintings in Mogao Grottoes. By the way, the visible spectral images are captured by a multispectral imaging system consisting of two broadband filters and a RGB camera with high spatial resolution.

  19. Inference of dense spectral reflectance images from sparse reflectance measurement using non-linear regression modeling (United States)

    Deglint, Jason; Kazemzadeh, Farnoud; Wong, Alexander; Clausi, David A.


    One method to acquire multispectral images is to sequentially capture a series of images where each image contains information from a different bandwidth of light. Another method is to use a series of beamsplitters and dichroic filters to guide different bandwidths of light onto different cameras. However, these methods are very time consuming and expensive and perform poorly in dynamic scenes or when observing transient phenomena. An alternative strategy to capturing multispectral data is to infer this data using sparse spectral reflectance measurements captured using an imaging device with overlapping bandpass filters, such as a consumer digital camera using a Bayer filter pattern. Currently the only method of inferring dense reflectance spectra is the Wiener adaptive filter, which makes Gaussian assumptions about the data. However, these assumptions may not always hold true for all data. We propose a new technique to infer dense reflectance spectra from sparse spectral measurements through the use of a non-linear regression model. The non-linear regression model used in this technique is the random forest model, which is an ensemble of decision trees and trained via the spectral characterization of the optical imaging system and spectral data pair generation. This model is then evaluated by spectrally characterizing different patches on the Macbeth color chart, as well as by reconstructing inferred multispectral images. Results show that the proposed technique can produce inferred dense reflectance spectra that correlate well with the true dense reflectance spectra, which illustrates the merits of the technique.

  20. Acquisition of multi-spectral flash image using optimization method via weight map (United States)

    Choi, Bong-Seok; Kim, Dae-Chul; Kwon, Oh-Seol; Ha, Yeong-Ho


    To acquire images in low-light environments, it is usually necessary to adopt long exposure times or to resort to flashes. Flashes, however, often induce color distortion, cause the red-eye effect and can be disturbing to the subjects. On the other hand, long-exposure shots are susceptible to subject-motion, as well as motion-blur due to camera shake when performed with a hand-held camera. A recently introduced technique to overcome the limitations of the traditional lowlight photography is the use of the multi-spectral flash. Multi-spectral flash images are a combination of UV/IR and visible spectrum information. The general idea is to retrieve the details from the UV/IR spectrum and the color from the visible spectrum. Multi-spectral flash images, however, are themselves subject to color distortion and noise. In this work, a method of computing multi-spectral flash images so as to reduce the noise and to improve the color accuracy is presented. The proposed method is a previously seen optimization method, improved by introducing a weight map used to discriminate the uniform regions from the detail regions. The optimization target function takes into account the output likelihood with respect to the ambient light image, the sparsity of image gradients, and the spectral constraints for the IR-red and UV-blue channels. The performance of the proposed method was objectively evaluated using longexposure shots as references.

  1. Technology for detecting spectral radiance by a snapshot multi-imaging spectroradiometer (United States)

    Zuber, Ralf; Stührmann, Ansgar; Gugg-Helminger, Anton; Seckmeyer, Gunther


    Technologies to determine spectral sky radiance distributions have evolved in recent years and have enabled new applications in remote sensing, for sky radiance measurements, in biological/diagnostic applications and luminance measurements. Most classical spectral imaging radiance technologies are based on mechanical and/or spectral scans. However, these methods require scanning time in which the spectral radiance distribution might change. To overcome this limitation, different so-called snapshot spectral imaging technologies have been developed that enable spectral and spatial non-scanning measurements. We present a new setup based on a facet mirror that is already used in imaging slicing spectrometers. By duplicating the input image instead of slicing it and using a specially designed entrance slit, we are able to select nearly 200 (14 × 14) channels within the field of view (FOV) for detecting spectral radiance in different directions. In addition, a megapixel image of the FOV is captured by an additional RGB camera. This image can be mapped onto the snapshot spectral image. In this paper, the mechanical setup, technical design considerations and first measurement results of a prototype are presented. For a proof of concept, the device is radiometrically calibrated and a 10 mm × 10 mm test pattern measured within a spectral range of 380 nm–800 nm with an optical bandwidth of 10 nm (full width at half maximum or FWHM). To show its potential in the UV spectral region, zenith sky radiance measurements in the UV of a clear sky were performed. Hence, the prototype was equipped with an entrance optic with a FOV of 0.5° and modified to obtain a radiometrically calibrated spectral range of 280 nm–470 nm with a FWHM of 3 nm. The measurement results have been compared to modeled data processed by UVSPEC, which showed deviations of less than 30%. This is far from being ideal, but an acceptable result with respect to available state

  2. Real-Time Imaging of Rabbit Retina with Retinal Degeneration by Using Spectral-Domain Optical Coherence Tomography (United States)

    Muraoka, Yuki; Ikeda, Hanako Ohashi; Nakano, Noriko; Hangai, Masanori; Toda, Yoshinobu; Okamoto-Furuta, Keiko; Kohda, Haruyasu; Kondo, Mineo; Terasaki, Hiroko; Kakizuka, Akira; Yoshimura, Nagahisa


    Background Recently, a transgenic rabbit with rhodopsin Pro 347 Leu mutation was generated as a model of retinitis pigmentosa (RP), which is characterized by a gradual loss of vision due to photoreceptor degeneration. The purpose of the current study is to noninvasively visualize and assess time-dependent changes in the retinal structures of a rabbit model of retinal degeneration by using speckle noise-reduced spectral-domain optical coherence tomography (SD-OCT). Methodology/Principal Findings Wild type (WT) and RP rabbits (aged 4–20 weeks) were investigated using SD-OCT. The total retinal thickness in RP rabbits decreased with age. The thickness of the outer nuclear layer (ONL) and between the external limiting membrane and Bruch's membrane (ELM–BM) were reduced in RP rabbits around the visual streak, compared to WT rabbits even at 4 weeks of age, and the differences increased with age. However, inner nuclear layer (INL) thickness in RP rabbits did not differ from that of WT during the observation period. The ganglion cell complex (GCC) thickness in RP rabbits increased near the optic nerve head but not around the visual streak in the later stages of the observation period. Hyper-reflective change was widely observed in the inner segments (IS) and outer segments (OS) of the photoreceptors in the OCT images of RP rabbits. Ultrastructural findings in RP retinas included the appearance of small rhodopsin-containing vesicles scattered in the extracellular space around the photoreceptors. Conclusions/Significance In the current study, SD-OCT provided the pattern of photoreceptor degeneration in RP rabbits and the longitudinal changes in each retinal layer through the evaluation of identical areas over time. The time-dependent changes in the retinal structure of RP rabbits showed regional and time-stage variations. In vivo imaging of RP rabbit retinas by using SD-OCT is a powerful method for characterizing disease dynamics and for assessing the therapeutic effects

  3. MARS spectral molecular imaging of lamb tissue: data collection and image analysis

    CERN Document Server

    Aamir, R; Bateman, C.J.; Butler, A.P.H.; Butler, P.H.; Anderson, N.G.; Bell, S.T.; Panta, R.K.; Healy, J.L.; Mohr, J.L.; Rajendran, K.; Walsh, M.F.; Ruiter,; Gieseg, S.P.; Woodfield, T.; Renaud, P.F.; Brooke, L.; Abdul-Majid, S.; Clyne, M.; Glendenning, R.; Bones, P.J.; Billinghurst, M.; Bartneck, C.; Mandalika, H.; Grasset, R.; Schleich, N.; Scott, N.; Nik, S.J.; Opie, A.; Janmale, T.; Tang, D.N.; Kim, D.; Doesburg, R.M.; Zainon, R.; Ronaldson, J.P.; Cook, N.J.; Smithies, D.J.; Hodge, K.


    Spectral molecular imaging is a new imaging technique able to discriminate and quantify different components of tissue simultaneously at high spatial and high energy resolution. Our MARS scanner is an x-ray based small animal CT system designed to be used in the diagnostic energy range (20 to 140 keV). In this paper, we demonstrate the use of the MARS scanner, equipped with the Medipix3RX spectroscopic photon-processing detector, to discriminate fat, calcium, and water in tissue. We present data collected from a sample of lamb meat including bone as an illustrative example of human tissue imaging. The data is analyzed using our 3D Algebraic Reconstruction Algorithm (MARS-ART) and by material decomposition based on a constrained linear least squares algorithm. The results presented here clearly show the quantification of lipid-like, water-like and bone-like components of tissue. However, it is also clear to us that better algorithms could extract more information of clinical interest from our data. Because we ...

  4. Continuous non-invasive blood glucose monitoring by spectral image differencing method (United States)

    Huang, Hao; Liao, Ningfang; Cheng, Haobo; Liang, Jing


    Currently, the use of implantable enzyme electrode sensor is the main method for continuous blood glucose monitoring. But the effect of electrochemical reactions and the significant drift caused by bioelectricity in body will reduce the accuracy of the glucose measurements. So the enzyme-based glucose sensors need to be calibrated several times each day by the finger-prick blood corrections. This increases the patient's pain. In this paper, we proposed a method for continuous Non-invasive blood glucose monitoring by spectral image differencing method in the near infrared band. The method uses a high-precision CCD detector to switch the filter in a very short period of time, obtains the spectral images. And then by using the morphological method to obtain the spectral image differences, the dynamic change of blood sugar is reflected in the image difference data. Through the experiment proved that this method can be used to monitor blood glucose dynamically to a certain extent.

  5. Single-pixel imaging based on compressive sensing with spectral-domain optical mixing (United States)

    Zhu, Zhijing; Chi, Hao; Jin, Tao; Zheng, Shilie; Jin, Xiaofeng; Zhang, Xianmin


    In this letter a single-pixel imaging structure is proposed based on compressive sensing using a spatial light modulator (SLM)-based spectrum shaper. In the approach, an SLM-based spectrum shaper, the pattern of which is a predetermined pseudorandom bit sequence (PRBS), spectrally codes the optical pulse carrying image information. The energy of the spectrally mixed pulse is detected by a single-pixel photodiode and the measurement results are used to reconstruct the image via a sparse recovery algorithm. As the mixing of the image signal and the PRBS is performed in the spectral domain, optical pulse stretching, modulation, compression and synchronization in the time domain are avoided. Experiments are implemented to verify the feasibility of the approach.

  6. Clearing up the signal: spectral imaging and linear unmixing in fluorescence microscopy. (United States)

    Zimmermann, Timo; Marrison, Joanne; Hogg, Karen; O'Toole, Peter


    The ongoing progress in fluorescence labeling and in microscope instrumentation allows the generation and the imaging of complex biological samples that contain increasing numbers of fluorophores. For the correct quantitative analysis of datasets with multiple fluorescence channels, it is essential that the signals of the different fluorophores are reliably separated. Due to the width of fluorescence spectra, this cannot always be achieved using the fluorescence filters in the microscope. In such cases spectral imaging of the fluorescence data and subsequent linear unmixing allows the separation even of highly overlapping fluorophores into pure signals. In this chapter, the problems of fluorescence cross talk are defined, the concept of spectral imaging and separation by linear unmixing is described, and an overview of the microscope types suitable for spectral imaging are given.

  7. Hyperspectral Image Classification Based on the Combination of Spatial-spectral Feature and Sparse Representation

    Directory of Open Access Journals (Sweden)

    YANG Zhaoxia


    Full Text Available In order to avoid the problem of being over-dependent on high-dimensional spectral feature in the traditional hyperspectral image classification, a novel approach based on the combination of spatial-spectral feature and sparse representation is proposed in this paper. Firstly, we extract the spatial-spectral feature by reorganizing the local image patch with the first d principal components(PCs into a vector representation, followed by a sorting scheme to make the vector invariant to local image rotation. Secondly, we learn the dictionary through a supervised method, and use it to code the features from test samples afterwards. Finally, we embed the resulting sparse feature coding into the support vector machine(SVM for hyperspectral image classification. Experiments using three hyperspectral data show that the proposed method can effectively improve the classification accuracy comparing with traditional classification methods.

  8. A Spectral-Texture Kernel-Based Classification Method for Hyperspectral Images

    Directory of Open Access Journals (Sweden)

    Yi Wang


    Full Text Available Classification of hyperspectral images always suffers from high dimensionality and very limited labeled samples. Recently, the spectral-spatial classification has attracted considerable attention and can achieve higher classification accuracy and smoother classification maps. In this paper, a novel spectral-spatial classification method for hyperspectral images by using kernel methods is investigated. For a given hyperspectral image, the principle component analysis (PCA transform is first performed. Then, the first principle component of the input image is segmented into non-overlapping homogeneous regions by using the entropy rate superpixel (ERS algorithm. Next, the local spectral histogram model is applied to each homogeneous region to obtain the corresponding texture features. Because this step is performed within each homogenous region, instead of within a fixed-size image window, the obtained local texture features in the image are more accurate, which can effectively benefit the improvement of classification accuracy. In the following step, a contextual spectral-texture kernel is constructed by combining spectral information in the image and the extracted texture information using the linearity property of the kernel methods. Finally, the classification map is achieved by the support vector machines (SVM classifier using the proposed spectral-texture kernel. Experiments on two benchmark airborne hyperspectral datasets demonstrate that our method can effectively improve classification accuracies, even though only a very limited training sample is available. Specifically, our method can achieve from 8.26% to 15.1% higher in terms of overall accuracy than the traditional SVM classifier. The performance of our method was further compared to several state-of-the-art classification methods of hyperspectral images using objective quantitative measures and a visual qualitative evaluation.


    Directory of Open Access Journals (Sweden)

    P. Walczykowski


    Full Text Available Remote Sensing plays very important role in many different study fields, like hydrology, crop management, environmental and ecosystem studies. For all mentioned areas of interest different remote sensing and image processing techniques, such as: image classification (object and pixel- based, object identification, change detection, etc. can be applied. Most of this techniques use spectral reflectance coefficients as the basis for the identification and distinction of different objects and materials, e.g. monitoring of vegetation stress, identification of water pollutants, yield identification, etc. Spectral characteristics are usually acquired using discrete methods such as spectrometric measurements in both laboratory and field conditions. Such measurements however can be very time consuming, which has led many international researchers to investigate the reliability and accuracy of using image-based methods. According to published and ongoing studies, in order to acquire these spectral characteristics from images, it is necessary to have hyperspectral data. The presented article describes a series of experiments conducted using the push-broom Headwall MicroHyperspec A-series VNIR. This hyperspectral scanner allows for registration of images with more than 300 spectral channels with a 1.9 nm spectral bandwidth in the 380- 1000 nm range. The aim of these experiments was to establish a methodology for acquiring spectral reflectance characteristics of different forms of land cover using such sensor. All research work was conducted in controlled conditions from low altitudes. Hyperspectral images obtained with this specific type of sensor requires a unique approach in terms of post-processing, especially radiometric correction. Large amounts of acquired imagery data allowed the authors to establish a new post- processing approach. The developed methodology allowed the authors to obtain spectral reflectance coefficients from a hyperspectral sensor

  10. Spectral-spatial classification combined with diffusion theory based inverse modeling of hyperspectral images (United States)

    Paluchowski, Lukasz A.; Bjorgan, Asgeir; Nordgaard, Hâvard B.; Randeberg, Lise L.


    Hyperspectral imagery opens a new perspective for biomedical diagnostics and tissue characterization. High spectral resolution can give insight into optical properties of the skin tissue. However, at the same time the amount of collected data represents a challenge when it comes to decomposition into clusters and extraction of useful diagnostic information. In this study spectral-spatial classification and inverse diffusion modeling were employed to hyperspectral images obtained from a porcine burn model using a hyperspectral push-broom camera. The implemented method takes advantage of spatial and spectral information simultaneously, and provides information about the average optical properties within each cluster. The implemented algorithm allows mapping spectral and spatial heterogeneity of the burn injury as well as dynamic changes of spectral properties within the burn area. The combination of statistical and physics informed tools allowed for initial separation of different burn wounds and further detailed characterization of the injuries in short post-injury time.

  11. Spectral segmentation of polygonized images with normalized cuts

    Energy Technology Data Exchange (ETDEWEB)

    Matsekh, Anna [Los Alamos National Laboratory; Skurikhin, Alexei [Los Alamos National Laboratory; Rosten, Edward [UNIV OF CAMBRIDGE


    We analyze numerical behavior of the eigenvectors corresponding to the lowest eigenvalues of the generalized graph Laplacians arising in the Normalized Cuts formulations of the image segmentation problem on coarse polygonal grids.

  12. In vivo spectral micro-imaging of tissue (United States)

    Demos, Stavros G; Urayama, Shiro; Lin, Bevin; Saroufeem, Ramez; Ghobrial, Moussa


    In vivo endoscopic methods an apparatuses for implementation of fluorescence and autofluorescence microscopy, with and without the use of exogenous agents, effectively (with resolution sufficient to image nuclei) visualize and categorize various abnormal tissue forms.

  13. Spectral imaging using clinical megavoltage beams and a novel multi-layer imager (United States)

    Myronakis, Marios; Fueglistaller, Rony; Rottmann, Joerg; Hu, Yue-Houng; Wang, Adam; Baturin, Paul; Huber, Pascal; Morf, Daniel; Star-Lack, Josh; Berbeco, Ross


    We assess the feasibility of clinical megavoltage (MV) spectral imaging for material and bone separation with a novel multi-layer imager (MLI) prototype. The MLI provides higher detective quantum efficiency and lower noise than conventional electronic portal imagers. Simulated experiments were performed using a validated Monte Carlo model of the MLI to estimate energy absorption and energy separation between the MLI components. Material separation was evaluated experimentally using solid water and aluminum (Al), copper (Cu) and gold (Au) for 2.5 MV, 6 MV and 6 MV flattening filter free (FFF) clinical photon beams. An anthropomorphic phantom with implanted gold fiducials was utilized to further demonstrate bone/gold separation. Weighted subtraction imaging was employed for material and bone separation. The weighting factor (w) was iteratively estimated, with the optimal w value determined by minimization of the relative signal difference (Δ {{S}R} ) and signal-difference-to-noise ratio (SDNR) between material (or bone) and the background. Energy separation between layers of the MLI was mainly the result of beam hardening between components with an average energy separation between 34 and 47 keV depending on the x-ray beam energy. The minimum average energy of the detected spectrum in the phosphor layer was 123 keV in the top layer of the MLI with the 2.5 MV beam. The w values that minimized Δ {{S}R} and SDNR for Al, Cu and Au were 0.89, 0.76 and 0.64 for 2.5 MV; for 6 MV FFF, w was 0.98, 0.93 and 0.77 respectively. Bone suppression in the anthropomorphic phantom resulted in improved visibility of the gold fiducials with the 2.5 MV beam. Optimization of the MLI design is required to achieve optimal separation at clinical MV beam energies.

  14. The 2D Spectral Intrinsic Decomposition Method Applied to Image Analysis

    Directory of Open Access Journals (Sweden)

    Samba Sidibe


    Full Text Available We propose a new method for autoadaptive image decomposition and recomposition based on the two-dimensional version of the Spectral Intrinsic Decomposition (SID. We introduce a faster diffusivity function for the computation of the mean envelope operator which provides the components of the SID algorithm for any signal. The 2D version of SID algorithm is implemented and applied to some very known images test. We extracted relevant components and obtained promising results in images analysis applications.

  15. Liquid crystal-based Mueller matrix spectral imaging polarimetry for parameterizing mineral structural organization. (United States)

    Gladish, James C; Duncan, Donald D


    Herein, we discuss the remote assessment of the subwavelength organizational structure of a medium. Specifically, we use spectral imaging polarimetry, as the vector nature of polarized light enables it to interact with optical anisotropies within a medium, while the spectral aspect of polarization is sensitive to small-scale structure. The ability to image these effects allows for inference of spatial structural organization parameters. This work describes a methodology for revealing structural organization by exploiting the Stokes/Mueller formalism and by utilizing measurements from a spectral imaging polarimeter constructed from liquid crystal variable retarders and a liquid crystal tunable filter. We provide results to validate the system and then show results from measurements on a mineral sample.

  16. Snapshot spectrally encoded fluorescence imaging through a fiber bundle (United States)

    Bedard, Noah; Tkaczyk, Tomasz S.


    Fiber optic endomicroscopy is a valuable tool for clinical diagnostics and animal studies because it can capture images of tissue in vivo with subcellular resolution. Current configurations for endomicroscopes have either limited spatial resolution or require a scanning mechanism at the distal end of the fiber, which can slow imaging speed and increase the probe size. We present a novel configuration that provides high contrast 350×350 pixel images at 7.2 frames per second, without the need for mechanical scanning at the proximal or distal end of the fiber. The proof-of-concept benchtop system is tested in fluorescence mode and can resolve 1.5 μm features of a high resolution 1951 USAF target.

  17. A method for comparison of growth media in objective identification of Penicillium based on multi-spectral imaging

    DEFF Research Database (Denmark)

    Clemmensen, Line Katrine Harder; Hansen, Michael Adsetts Edberg; Frisvad, Jens Christian


    propose the use of multi-spectral imaging as a means of objective identification. Three species of the fungal genus Penicillium are subject to classification. To obtain an objective classification we use multi-spectral images. Previously, RGB images have proven useful for the purpose. We use multi...

  18. Color Restoration of RGBN Multispectral Filter Array Sensor Images Based on Spectral Decomposition

    Directory of Open Access Journals (Sweden)

    Chulhee Park


    Full Text Available A multispectral filter array (MSFA image sensor with red, green, blue and near-infrared (NIR filters is useful for various imaging applications with the advantages that it obtains color information and NIR information simultaneously. Because the MSFA image sensor needs to acquire invisible band information, it is necessary to remove the IR cut-offfilter (IRCF. However, without the IRCF, the color of the image is desaturated by the interference of the additional NIR component of each RGB color channel. To overcome color degradation, a signal processing approach is required to restore natural color by removing the unwanted NIR contribution to the RGB color channels while the additional NIR information remains in the N channel. Thus, in this paper, we propose a color restoration method for an imaging system based on the MSFA image sensor with RGBN filters. To remove the unnecessary NIR component in each RGB color channel, spectral estimation and spectral decomposition are performed based on the spectral characteristics of the MSFA sensor. The proposed color restoration method estimates the spectral intensity in NIR band and recovers hue and color saturation by decomposing the visible band component and the NIR band component in each RGB color channel. The experimental results show that the proposed method effectively restores natural color and minimizes angular errors.

  19. Color Restoration of RGBN Multispectral Filter Array Sensor Images Based on Spectral Decomposition. (United States)

    Park, Chulhee; Kang, Moon Gi


    A multispectral filter array (MSFA) image sensor with red, green, blue and near-infrared (NIR) filters is useful for various imaging applications with the advantages that it obtains color information and NIR information simultaneously. Because the MSFA image sensor needs to acquire invisible band information, it is necessary to remove the IR cut-offfilter (IRCF). However, without the IRCF, the color of the image is desaturated by the interference of the additional NIR component of each RGB color channel. To overcome color degradation, a signal processing approach is required to restore natural color by removing the unwanted NIR contribution to the RGB color channels while the additional NIR information remains in the N channel. Thus, in this paper, we propose a color restoration method for an imaging system based on the MSFA image sensor with RGBN filters. To remove the unnecessary NIR component in each RGB color channel, spectral estimation and spectral decomposition are performed based on the spectral characteristics of the MSFA sensor. The proposed color restoration method estimates the spectral intensity in NIR band and recovers hue and color saturation by decomposing the visible band component and the NIR band component in each RGB color channel. The experimental results show that the proposed method effectively restores natural color and minimizes angular errors.

  20. Digital simulation of staining in histopathology multispectral images: enhancement and linear transformation of spectral transmittance. (United States)

    Bautista, Pinky A; Yagi, Yukako


    Hematoxylin and eosin (H&E) stain is currently the most popular for routine histopathology staining. Special and/or immuno-histochemical (IHC) staining is often requested to further corroborate the initial diagnosis on H&E stained tissue sections. Digital simulation of staining (or digital staining) can be a very valuable tool to produce the desired stained images from the H&E stained tissue sections instantaneously. We present an approach to digital staining of histopathology multispectral images by combining the effects of spectral enhancement and spectral transformation. Spectral enhancement is accomplished by shifting the N-band original spectrum of the multispectral pixel with the weighted difference between the pixel's original and estimated spectrum; the spectrum is estimated using M transformed to the spectral configuration associated to its reaction to a specific stain by utilizing an N × N transformation matrix, which is derived through application of least mean squares method to the enhanced and target spectral transmittance samples of the different tissue components found in the image. Results of our experiments on the digital conversion of an H&E stained multispectral image to its Masson's trichrome stained equivalent show the viability of the method.

  1. Hyper-V Replica essentials

    CERN Document Server

    Krstevski, Vangel


    a in various deployment scenarios.Hyper-V Replica Essentials is for Windows Server administrators who want to improve their system availability and speed up disaster recovery. You will need experience in Hyper-V deployment because Hyper-V Replica is built in the Hyper-V platform.

  2. Integrating two spectral imaging systems in an automated mineralogy application

    CSIR Research Space (South Africa)

    Harris, D


    Full Text Available are then extracted by means of a SCARA robot, in a pickand-place arrangement. The successful development required the solution of various challenges in the image processing and materials handling domains. A previous paper has concentrated on the physical handling...

  3. Multi-spectral lifetime imaging: methods and applications

    NARCIS (Netherlands)

    Fereidouni, F.


    The aim of this PhD project is to further develop multispectral life time imaging hardware and analyses methods. The hardware system, Lambda-Tau, generates a considerable amount of data at high speed. To fully exploit the power of this new hardware, fast and reliable data analyses methods are

  4. Imaging acoustic vibrations in an ear model using spectrally encoded interferometry (United States)

    Grechin, Sveta; Yelin, Dvir


    Imaging vibrational patterns of the tympanic membrane would allow an accurate measurement of its mechanical properties and provide early diagnosis of various hearing disorders. Various optical technologies have been suggested to address this challenge and demonstrated in vitro using point scanning and full-field interferometry. Spectrally encoded imaging has been previously demonstrated capable of imaging tissue acoustic vibrations with high spatial resolution, including two-dimensional phase and amplitude mapping. In this work, we demonstrate a compact optical apparatus for imaging acoustic vibrations that could be incorporated into a commercially available digital otoscope. By transmitting harmonic sound waves through the otoscope insufflation port and analyzing the spectral interferograms using custom-built software, we demonstrate high-resolution vibration imaging of a circular rubber membrane within an ear model.

  5. BASS Net: Band-Adaptive Spectral-Spatial Feature Learning Neural Network for Hyperspectral Image Classification (United States)

    Santara, Anirban; Mani, Kaustubh; Hatwar, Pranoot; Singh, Ankit; Garg, Ankur; Padia, Kirti; Mitra, Pabitra


    Deep learning based landcover classification algorithms have recently been proposed in literature. In hyperspectral images (HSI) they face the challenges of large dimensionality, spatial variability of spectral signatures and scarcity of labeled data. In this article we propose an end-to-end deep learning architecture that extracts band specific spectral-spatial features and performs landcover classification. The architecture has fewer independent connection weights and thus requires lesser number of training data. The method is found to outperform the highest reported accuracies on popular hyperspectral image data sets.

  6. Mastering Hyper-V

    CERN Document Server

    Tender, Peter De


    This book is mainly targeted at the common network and system administrator who has to deal with server virtualization in their day to day job, primarily using Microsoft Hyper-V and System Center. It assumes you have some practical experience with previous versions of Hyper-V, although this is not a requirement; you don't need to be a subject matter expert.

  7. High-speed atmospheric correction for spectral image processing (United States)

    Perkins, Timothy; Adler-Golden, Steven; Cappelaere, Patrice; Mandl, Daniel


    Land and ocean data product generation from visible-through-shortwave-infrared multispectral and hyperspectral imagery requires atmospheric correction or compensation, that is, the removal of atmospheric absorption and scattering effects that contaminate the measured spectra. We have recently developed a prototype software system for automated, low-latency, high-accuracy atmospheric correction based on a C++-language version of the Spectral Sciences, Inc. FLAASH™ code. In this system, pre-calculated look-up tables replace on-the-fly MODTRAN® radiative transfer calculations, while the portable C++ code enables parallel processing on multicore/multiprocessor computer systems. The initial software has been installed on the Sensor Web at NASA Goddard Space Flight Center, where it is currently atmospherically correcting new data from the EO-1 Hyperion and ALI sensors. Computation time is around 10 s per data cube per processor. Further development will be conducted to implement the new atmospheric correction software on board the upcoming HyspIRI mission's Intelligent Payload Module, where it would generate data products in nearreal time for Direct Broadcast to the ground. The rapid turn-around of data products made possible by this software would benefit a broad range of applications in areas of emergency response, environmental monitoring and national defense.


    Directory of Open Access Journals (Sweden)

    C. Tsouvaltsidis


    Full Text Available The purpose of this scientific survey is to support the research being conducted at York University in the field of spectroscopy and nanosatellites using Argus 1000 micro- spectrometer and low cost unmanned aerial vehicle (UAV system. On the CanX-2 mission, the Argus spectrometer observes reflected infrared solar radiation emitted by Earth surface targets as small as 1.5 km within the 0.9-1.7 μm range. However, limitations in the volume of data due to onboard power constraints and a lack of an onboard camera system make it very difficult to verify these objectives using ground truth. In the last five years that Argus has been in operation, we have made over 200 observations over a series of land and ocean targets. We have recently examined algorithms to improve the geolocation accuracy of the spectrometer payload and began to conduct an analysis of soil health content using Argus spectral data. A field campaign is used to obtain data to assess geolocation accuracy using coastline crossing detection and to obtain airborne bare soil spectra in ground truth form. The payload system used for the field campaign consists of an Argus spectrometer, optical camera, GPS, and attitude sensors, integrated into a low-cost, unmanned aerial vehicle (UAV, which will be presented along with the experimental procedure and field campaign results.

  9. Characteristics of north jovian aurora from STIS FUV spectral images


    Gustin, J.; Grodent, D.; Ray, L. C.; Bonfond, B.; Bunce, E. J.; Nichols, J. D.; Ozak, N.


    We analyzed two observations obtained in Jan. 2013, consisting of spatial scans of the jovian north ultraviolet aurora with the HST Space Telescope Imaging Spectrograph (STIS) in the spectroscopic mode. The color ratio (CR) method, which relates the wavelength-dependent absorption of the FUV spectra to the mean energy of the precipitating electrons, allowed us to determine important characteristics of the entire auroral region. The results show that the spatial distribution of the precipitati...

  10. Spectrally enhanced image resolution of tooth enamel surfaces (United States)

    Zhang, Liang; Nelson, Leonard Y.; Berg, Joel H.; Seibel, Eric J.


    Short-wavelength 405 nm laser illumination of surface dental enamel using an ultrathin scanning fiber endoscope (SFE) produced enhanced detail of dental topography. The surfaces of human extracted teeth and artificial erosions were imaged with 405 nm, 444 nm, 532 nm, or 635 nm illumination lasers. The obtained images were then processed offline to compensate for any differences in the illumination beam diameters between the different lasers. Scattering and absorption coefficients for a Monte Carlo model of light propagation in dental enamel for 405 nm were scaled from published data at 532 nm and 633 nm. The value of the scattering coefficient used in the model was scaled from the coefficients at 532 nm and 633 nm by the inverse third power of wavelength. Simulations showed that the penetration depth of short-wavelength illumination is localized close to the enamel surface, while long-wavelength illumination travels much further and is backscattered from greater depths. Therefore, images obtained using short wavelength laser are not contaminated by the superposition of light reflected from enamel tissue at greater depths. Hence, the SFE with short-wavelength illumination may make it possible to visualize surface manifestations of phenomena such as demineralization, thus better aiding the clinician in the detection of early caries.


    Energy Technology Data Exchange (ETDEWEB)



    We consider the problem of pixel-by-pixel classification of a multi-spectral image using supervised learning. Conventional supervised classification techniques such as maximum likelihood classification and less conventional ones such as neural networks, typically base such classifications solely on the spectral components of each pixel. It is easy to see why the color of a pixel provides a nice, bounded, fixed dimensional space in which these classifiers work well. It is often the case however, that spectral information alone is not sufficient to correctly classify a pixel. Maybe spatial neighborhood information is required as well. Or may be the raw spectral components do not themselves make for easy classification, but some arithmetic combination of them would. In either of these cases we have the problem of selecting suitable spatial, spectral or spatio-spectral features that allow the classifier to do its job well. The number of all possible such features is extremely large. How can we select a suitable subset? We have developed GENIE, a hybrid learning system that combines a genetic algorithm that searches a space of image processing operations for a set that can produce suitable feature planes, and a more conventional classifier which uses those feature planes to output a final classification. In this paper we show that the use of a hybrid GA provides significant advantages over using either a GA alone or more conventional classification methods alone. We present results using high-resolution IKONOS data, looking for regions of burned forest and for roads.

  12. Classifying the Baltic Sea Shallow Water Habitats Using Image-Based and Spectral Library Methods

    Directory of Open Access Journals (Sweden)

    Tiit Kutser


    Full Text Available The structure of benthic macrophyte habitats is known to indicate the quality of coastal water. Thus, a large-scale analysis of the spatial patterns of coastal marine habitats enables us to adequately estimate the status of valuable coastal marine habitats, provide better evidence for environmental changes and describe processes that are behind the changes. Knowing the spatial distribution of benthic habitats is also important from the coastal management point of view. A big challenge in remote sensing mapping of benthic habitats is to define appropriate mapping classes that are also meaningful from the ecological point of view. In this study, the benthic habitat classification scheme was defined for the study areas in the relatively turbid north-eastern Baltic Sea coastal environment. Two different classification methods—image-based and the spectral library—method were used for image classification. The image-based classification method can provide benthic habitat maps from coastal areas, but requires extensive field studies. An alternative approach in image classification is to use measured and/or modelled spectral libraries. This method does not require fieldwork at the time of image collection if preliminary information about the potential benthic habitats and their spectral properties, as well as variability in optical water properties exists from earlier studies. A spectral library was generated through radiative transfer model HydroLight computations using measured reflectance spectra from representative benthic substrates and water quality measurements. Our previous results have shown that benthic habitat mapping should be done at high spatial resolution, owing to the small-scale heterogeneity of such habitats in the Estonian coastal waters. In this study, the capability of high spatial resolution hyperspectral airborne a Compact Airborne Spectrographic Imager (CASI sensor and a high spatial resolution multispectral WorldView-2


    Directory of Open Access Journals (Sweden)

    Y.-T. Hsieh


    Full Text Available The shadows in optical remote sensing images are regarded as image nuisances in numerous applications. The classification and interpretation of shadow area in a remote sensing image are a challenge, because of the reduction or total loss of spectral information in those areas. In recent years, airborne multispectral aerial image devices have been developed 12-bit or higher radiometric resolution data, including Leica ADS-40, Intergraph DMC. The increased radiometric resolution of digital imagery provides more radiometric details of potential use in classification or interpretation of land cover of shadow areas. Therefore, the objectives of this study are to analyze the spectral properties of the land cover in the shadow areas by ADS-40 high radiometric resolution aerial images, and to investigate the spectral and vegetation index differences between the various shadow and non-shadow land covers. According to research findings of spectral analysis of ADS-40 image: (i The DN values in shadow area are much lower than in nonshadow area; (ii DN values received from shadowed areas that will also be affected by different land cover, and it shows the possibility of land cover property retrieval as in nonshadow area; (iii The DN values received from shadowed regions decrease in the visible band from short to long wavelengths due to scattering; (iv The shadow area NIR of vegetation category also shows a strong reflection; (v Generally, vegetation indexes (NDVI still have utility to classify the vegetation and non-vegetation in shadow area. The spectral data of high radiometric resolution images (ADS-40 is potential for the extract land cover information of shadow areas.

  14. Parallel exploitation of a spatial-spectral classification approach for hyperspectral images on RVC-CAL (United States)

    Lazcano, R.; Madroñal, D.; Fabelo, H.; Ortega, S.; Salvador, R.; Callicó, G. M.; Juárez, E.; Sanz, C.


    Hyperspectral Imaging (HI) assembles high resolution spectral information from hundreds of narrow bands across the electromagnetic spectrum, thus generating 3D data cubes in which each pixel gathers the spectral information of the reflectance of every spatial pixel. As a result, each image is composed of large volumes of data, which turns its processing into a challenge, as performance requirements have been continuously tightened. For instance, new HI applications demand real-time responses. Hence, parallel processing becomes a necessity to achieve this requirement, so the intrinsic parallelism of the algorithms must be exploited. In this paper, a spatial-spectral classification approach has been implemented using a dataflow language known as RVCCAL. This language represents a system as a set of functional units, and its main advantage is that it simplifies the parallelization process by mapping the different blocks over different processing units. The spatial-spectral classification approach aims at refining the classification results previously obtained by using a K-Nearest Neighbors (KNN) filtering process, in which both the pixel spectral value and the spatial coordinates are considered. To do so, KNN needs two inputs: a one-band representation of the hyperspectral image and the classification results provided by a pixel-wise classifier. Thus, spatial-spectral classification algorithm is divided into three different stages: a Principal Component Analysis (PCA) algorithm for computing the one-band representation of the image, a Support Vector Machine (SVM) classifier, and the KNN-based filtering algorithm. The parallelization of these algorithms shows promising results in terms of computational time, as the mapping of them over different cores presents a speedup of 2.69x when using 3 cores. Consequently, experimental results demonstrate that real-time processing of hyperspectral images is achievable.

  15. Hurricane coastal flood analysis using multispectral spectral images (United States)

    Ogashawara, I.; Ferreira, C.; Curtarelli, M. P.


    Flooding is one of the main hazards caused by extreme events such as hurricanes and tropical storms. Therefore, flood maps are a crucial tool to support policy makers, environmental managers and other government agencies for emergency management, disaster recovery and risk reduction planning. However traditional flood mapping methods rely heavily on the interpolation of hydrodynamic models results, and most recently, the extensive collection of field data. These methods are time-consuming, labor intensive, and costly. Efficient and fast response alternative methods should be developed in order to improve flood mapping, and remote sensing has been proved as a valuable tool for this application. Our goal in this paper is to introduce a novel technique based on spectral analysis in order to aggregate knowledge and information to map coastal flood areas. For this purpose we used the Normalized Diference Water Index (NDWI) which was derived from two the medium resolution LANDSAT/TM 5 surface reflectance product from the LANDSAT climate data record (CDR). This product is generated from specialized software called Landsat Ecosystem Disturbance Adaptive Processing System (LEDAPS). We used the surface reflectance products acquired before and after the passage of Hurricane Ike for East Texas in September of 2008. We used as end member a classification of estimated flooded area based on the United States Geological Survey (USGS) mobile storm surge network that was deployed for Hurricane Ike. We used a dataset which consisted of 59 water levels recording stations. The estimated flooded area was delineated interpolating the maximum surge in each location using a spline with barriers method with high tension and a 30 meter Digital Elevation Model (DEM) from the National Elevation Dataset (NED). Our results showed that, in the flooded area, the NDWI values decreased after the hurricane landfall on average from 0.38 to 0.18 and the median value decreased from 0.36 to 0.2. However

  16. Spectral Laplace-Beltrami wavelets with applications in medical images. (United States)

    Tan, Mingzhen; Qiu, Anqi


    The spectral graph wavelet transform (SGWT) has recently been developed to compute wavelet transforms of functions defined on non-Euclidean spaces such as graphs. By capitalizing on the established framework of the SGWT, we adopt a fast and efficient computation of a discretized Laplace-Beltrami (LB) operator that allows its extension from arbitrary graphs to differentiable and closed 2-D manifolds (smooth surfaces embedded in the 3-D Euclidean space). This particular class of manifolds are widely used in bioimaging to characterize the morphology of cells, tissues, and organs. They are often discretized into triangular meshes, providing additional geometric information apart from simple nodes and weighted connections in graphs. In comparison with the SGWT, the wavelet bases constructed with the LB operator are spatially localized with a more uniform "spread" with respect to underlying curvature of the surface. In our experiments, we first use synthetic data to show that traditional applications of wavelets in smoothing and edge detectio can be done using the wavelet bases constructed with the LB operator. Second, we show that multi-resolutional capabilities of the proposed framework are applicable in the classification of Alzheimer's patients with normal subjects using hippocampal shapes. Wavelet transforms of the hippocampal shape deformations at finer resolutions registered higher sensitivity (96%) and specificity (90%) than the classification results obtained from the direct usage of hippocampal shape deformations. In addition, the Laplace-Beltrami method requires consistently a smaller number of principal components (to retain a fixed variance) at higher resolution as compared to the binary and weighted graph Laplacians, demonstrating the potential of the wavelet bases in adapting to the geometry of the underlying manifold.

  17. Generating stimuli of arbitrary spectral power distributions for vision and imaging research (United States)

    Farup, Ivar; Seim, Thorstein; Wold, Jan H.; Hardeberg, Jon Y.


    The spectral integrator at the University of Oslo consists of a lamp whose light is dispersed into a spectrum by means of a prism. Using a transmissive LCD panel controlled by a computer, certain fractions of the light in different parts of the spectrum is masked out. The remaining spectrum is integrated and the resulting colored light projected onto a dispersing plate. Attached to the computer is also a spectroradiometer measuring the projected light, thus making the spectral integrator a closed-loop system. One main challenge is the generation of stimuli of arbitrary spectral power distributions. We have solved this by means of a computational calibration routine: Vertical lines of pixels within the spectral window of the LCD panel are opened successively and the resulting spectral power distribution on the dispersing plate is measured. A similar procedure for the horizontal lines gives, under certain assumptions, the contribution from each opened pixel. Hereby, light of any spectral power distribution can be generated by means of a fast iterative heuristic search algorithm. The apparatus is convenient for research within the fields of color vision, color appearance modelling, multispectral color imaging, and spectral characterization of devices ranging from digital cameras to solar cell panels.

  18. Assessing reliability of classification in the most informative spectral regions of hyperspectral images (United States)

    Aria, S. E. Hosseini; Menenti, M.; Gorte, B. G. H.


    Reliability analysis is usually applied to evaluate classification procedures with different classes. In this research, we have applied the analysis to two different band sets to find out which one is more reliable. These band sets provide the most informative spectral regions covered by hyperspectral images. The informative regions are identified by minimizing two dependency measures between bands: correlation coefficient and normalized mutual information. The implementations are done by a newly developed top-down method named Spectral Region Splitting (SRS) resulting in two sets of bands which are almost identical at critical spectral regions. A reliability analysis based on the thresholding technique of the two sets of bands was performed. A technique was applied to discard those pixels that are not correctly classified at the given confidence level. The results show that the informative spectral regions selected by normalized mutual information was more reliable.

  19. Image Retrieval Based on Multiview Constrained Nonnegative Matrix Factorization and Gaussian Mixture Model Spectral Clustering Method

    Directory of Open Access Journals (Sweden)

    Qunyi Xie


    Full Text Available Content-based image retrieval has recently become an important research topic and has been widely used for managing images from repertories. In this article, we address an efficient technique, called MNGS, which integrates multiview constrained nonnegative matrix factorization (NMF and Gaussian mixture model- (GMM- based spectral clustering for image retrieval. In the proposed methodology, the multiview NMF scheme provides competitive sparse representations of underlying images through decomposition of a similarity-preserving matrix that is formed by fusing multiple features from different visual aspects. In particular, the proposed method merges manifold constraints into the standard NMF objective function to impose an orthogonality constraint on the basis matrix and satisfy the structure preservation requirement of the coefficient matrix. To manipulate the clustering method on sparse representations, this paper has developed a GMM-based spectral clustering method in which the Gaussian components are regrouped in spectral space, which significantly improves the retrieval effectiveness. In this way, image retrieval of the whole database translates to a nearest-neighbour search in the cluster containing the query image. Simultaneously, this study investigates the proof of convergence of the objective function and the analysis of the computational complexity. Experimental results on three standard image datasets reveal the advantages that can be achieved with the proposed retrieval scheme.

  20. Fast, cheap and in control: spectral imaging with handheld devices (United States)

    Gooding, Edward A.; Deutsch, Erik R.; Huehnerhoff, Joseph; Hajian, Arsen R.


    Remote sensing has moved out of the laboratory and into the real world. Instruments using reflection or Raman imaging modalities become faster, cheaper and more powerful annually. Enabling technologies include virtual slit spectrometer design, high power multimode diode lasers, fast open-loop scanning systems, low-noise IR-sensitive array detectors and low-cost computers with touchscreen interfaces. High-volume manufacturing assembles these components into inexpensive portable or handheld devices that make possible sophisticated decision-making based on robust data analytics. Examples include threat, hazmat and narcotics detection; remote gas sensing; biophotonic screening; environmental remediation and a host of other applications.

  1. Real-time video imaging of gas plumes using a DMD-enabled full-frame programmable spectral filter (United States)

    Graff, David L.; Love, Steven P.


    Programmable spectral filters based on digital micromirror devices (DMDs) are typically restricted to imaging a 1D line across a scene, analogous to conventional "push-broom scanning" hyperspectral imagers. In previous work, however, we demonstrated that, by placing the diffraction grating at a telecentric image plane rather than at the more conventional location in collimated space, a spectral plane can be created at which light from the entire 2D scene focuses to a unique location for each wavelength. A DMD placed at this spectral plane can then spectrally manipulate an entire 2D image at once, enabling programmable matched filters to be applied to real-time video imaging. We have adapted this concept to imaging rapidly evolving gas plumes. We have constructed a high spectral resolution programmable spectral imager operating in the shortwave infrared region, capable of resolving the rotational-vibrational line structure of several gases at sub-nm spectral resolution. This ability to resolve the detailed gas-phase line structure enables implementation of highly selective filters that unambiguously separate the gas spectrum from background spectral clutter. On-line and between-line multi-band spectral filters, with bands individually weighted using the DMD's duty-cycle-based grayscale capability, are alternately uploaded to the DMD, the resulting images differenced, and the result displayed in real time at rates of several frames per second to produce real-time video of the turbulent motion of the gas plume.

  2. Chest CT using spectral filtration: radiation dose, image quality, and spectrum of clinical utility

    Energy Technology Data Exchange (ETDEWEB)

    Braun, Franziska M.; Johnson, Thorsten R.C.; Sommer, Wieland H.; Thierfelder, Kolja M.; Meinel, Felix G. [University Hospital Munich, Institute for Clinical Radiology, Munich (Germany)


    To determine the radiation dose, image quality, and clinical utility of non-enhanced chest CT with spectral filtration. We retrospectively analysed 25 non-contrast chest CT examinations acquired with spectral filtration (tin-filtered Sn100 kVp spectrum) compared to 25 examinations acquired without spectral filtration (120 kV). Radiation metrics were compared. Image noise was measured. Contrast-to-noise-ratio (CNR) and figure-of-merit (FOM) were calculated. Diagnostic confidence for the assessment of various thoracic pathologies was rated by two independent readers. Effective chest diameters were comparable between groups (P = 0.613). In spectral filtration CT, median CTDI{sub vol}, DLP, and size-specific dose estimate (SSDE) were reduced (0.46 vs. 4.3 mGy, 16 vs. 141 mGy*cm, and 0.65 vs. 5.9 mGy, all P < 0.001). Spectral filtration CT had higher image noise (21.3 vs. 13.2 HU, P < 0.001) and lower CNR (47.2 vs. 75.3, P < 0.001), but was more dose-efficient (FOM 10,659 vs. 2,231/mSv, P < 0.001). Diagnostic confidence for parenchymal lung disease and osseous pathologies was lower with spectral filtration CT, but no significant difference was found for pleural pathologies, pulmonary nodules, or pneumonia. Non-contrast chest CT using spectral filtration appears to be sufficient for the assessment of a considerable spectrum of thoracic pathologies, while providing superior dose efficiency, allowing for substantial radiation dose reduction. (orig.)

  3. Multi-spectral imaging for the estimation of shooting distances. (United States)

    Zapata, Félix; López-López, María; Amigo, José Manuel; García-Ruiz, Carmen


    Multispectral images of clothing targets shot at seven different distances (from 10 to 220cm) were recorded at 18 specific wavelengths in the 400-1000nm range to visualize the gunshot residue (GSR) pattern. Principal component analysis (PCA) showed that the use of violet-blue wavelengths (430, 450 and 470nm) provided the largest contrast between the GSR particles and the white cotton fabric. Then, the correlation between the amount of GSR particles on clothing targets and the shooting distance was studied. By selecting the blue frame of multispectral images (i.e. the blue frame in the red-green-blue (RGB) system which falls at 470nm), the amount of pixels containing GSR particles was accounted based on the intensity of pixels in that frame. Results demonstrated that the number of pixels containing GSR exponentially decreases with the shooting distance from 30 to 220cm following a particular exponential equation. However, the targets shot at the shortest distance (10cm) did not satisfy the above equation, probably due to the noticeable differences of the GSR-pattern of these targets (e.g. high presence of soot). Then, the equation was applied to validation samples to estimate the shooting distances, obtaining results with an error below 10%. Copyright © 2017 Elsevier B.V. All rights reserved.

  4. Classification of Error-Diffused Halftone Images Based on Spectral Regression Kernel Discriminant Analysis

    Directory of Open Access Journals (Sweden)

    Zhigao Zeng


    Full Text Available This paper proposes a novel algorithm to solve the challenging problem of classifying error-diffused halftone images. We firstly design the class feature matrices, after extracting the image patches according to their statistics characteristics, to classify the error-diffused halftone images. Then, the spectral regression kernel discriminant analysis is used for feature dimension reduction. The error-diffused halftone images are finally classified using an idea similar to the nearest centroids classifier. As demonstrated by the experimental results, our method is fast and can achieve a high classification accuracy rate with an added benefit of robustness in tackling noise.

  5. Descemet Membrane Endothelial Keratoplasty: Intraoperative and Postoperative Imaging Spectral-Domain Optical Coherence Tomography

    Directory of Open Access Journals (Sweden)

    Marcus Ang


    Full Text Available We describe a case report of using the same handheld spectral-domain anterior segment optical coherence tomography (ASOCT for rapid intraoperative and postoperative imaging in a case of Descemet membrane endothelial keratoplasty (DMEK. A 67-year-old woman, with Fuchs dystrophy and corneal decompensation, underwent DMEK with intraoperative ASOCT imaging using the handheld Envisu spectral domain ASOCT system (Bioptigen, Inc., Morrisville, NC, USA. We found that this easy-to-use portable system with handheld probe allowed for rapid imaging of the anterior segment during donor manipulation to visualize the orientation of the DMEK donor, as well as to confirm the initial adhesion of the DMEK donor. Moreover, the same system may be used for postoperative monitoring of graft adhesion, corneal thickness, and stromal remodeling in the clinic with very high-definition images.

  6. Rapid mapping of digital integrated circuit logic gates via multi-spectral backside imaging

    CERN Document Server

    Adato, Ronen; Zangeneh, Mahmoud; Zhou, Boyou; Joshi, Ajay; Goldberg, Bennett; Unlu, M Selim


    Modern semiconductor integrated circuits are increasingly fabricated at untrusted third party foundries. There now exist myriad security threats of malicious tampering at the hardware level and hence a clear and pressing need for new tools that enable rapid, robust and low-cost validation of circuit layouts. Optical backside imaging offers an attractive platform, but its limited resolution and throughput cannot cope with the nanoscale sizes of modern circuitry and the need to image over a large area. We propose and demonstrate a multi-spectral imaging approach to overcome these obstacles by identifying key circuit elements on the basis of their spectral response. This obviates the need to directly image the nanoscale components that define them, thereby relaxing resolution and spatial sampling requirements by 1 and 2 - 4 orders of magnitude respectively. Our results directly address critical security needs in the integrated circuit supply chain and highlight the potential of spectroscopic techniques to addres...

  7. Digital simulation of staining in histopathology multispectral images: enhancement and linear transformation of spectral transmittance (United States)

    Bautista, Pinky A.; Yagi, Yukako


    Hematoxylin and eosin (H&E) stain is currently the most popular for routine histopathology staining. Special and/or immuno-histochemical (IHC) staining is often requested to further corroborate the initial diagnosis on H&E stained tissue sections. Digital simulation of staining (or digital staining) can be a very valuable tool to produce the desired stained images from the H&E stained tissue sections instantaneously. We present an approach to digital staining of histopathology multispectral images by combining the effects of spectral enhancement and spectral transformation. Spectral enhancement is accomplished by shifting the N-band original spectrum of the multispectral pixel with the weighted difference between the pixel's original and estimated spectrum; the spectrum is estimated using M Masson's trichrome stained equivalent show the viability of the method.

  8. Multi-spectral imaging analysis of pigmented and vascular skin lesions: results of a clinical trial (United States)

    Kuzmina, Ilona; Diebele, Ilze; Valeine, Lauma; Jakovels, Dainis; Kempele, Anna; Kapostinsh, Janis; Spigulis, Janis


    A clinical trial comprising 266 pigmented lesions and 49 vascular lesions has been performed in three Riga clinics by means of multi-spectral imaging analysis. The imaging system Nuance 2.4 (CRI) and self-developed software for mapping of the main skin chromophores were used. The obtained results confirm clinical potential of this technology for non-contact quantitative assessment of skin pathologies.

  9. In-vivo fluorescence imaging with a multivariate curve resolution spectral unmixing technique (United States)

    Xu, Heng; Rice, Brad W.


    Spectral unmixing is a useful technique in fluorescence imaging for reducing the effects of native tissue autofluorescence and separating multiple fluorescence probes. While spectral unmixing methods are well established in fluorescence microscopy, they typically rely on precharacterized in-vitro spectra for each fluorophore. However, there are unique challenges for in-vivo applications, since the tissue absorption and scattering can have a significant impact on the measured spectrum of the fluorophore, and therefore make the in-vivo spectra substantially different to that of in vitro. In this work, we introduce a spectral unmixing algorithm tailored for in-vivo optical imaging that does not rely on precharacterized spectral libraries. It is derived from a multivariate curve resolution (MCR) method, which has been widely used in studies of chemometrics and gene expression. Given multispectral images and a few straightforward constraints such as non-negativity, the algorithm automatically finds the signal distribution and the pure spectrum of each component. Signal distribution maps help separate autofluorescence from other probes in the raw images and hence provide better quantification and localization for each probe. The algorithm is demonstrated with an extensive set of in-vivo experiments using near-infrared dyes and quantum dots in both epi-illumination and transillumination geometries.

  10. Hyperspectral imaging of polymer banknotes for building and analysis of spectral library (United States)

    Lim, Hoong-Ta; Murukeshan, Vadakke Matham


    The use of counterfeit banknotes increases crime rates and cripples the economy. New countermeasures are required to stop counterfeiters who use advancing technologies with criminal intent. Many countries started adopting polymer banknotes to replace paper notes, as polymer notes are more durable and have better quality. The research on authenticating such banknotes is of much interest to the forensic investigators. Hyperspectral imaging can be employed to build a spectral library of polymer notes, which can then be used for classification to authenticate these notes. This is however not widely reported and has become a research interest in forensic identification. This paper focuses on the use of hyperspectral imaging on polymer notes to build spectral libraries, using a pushbroom hyperspectral imager which has been previously reported. As an initial study, a spectral library will be built from three arbitrarily chosen regions of interest of five circulated genuine polymer notes. Principal component analysis is used for dimension reduction and to convert the information in the spectral library to principal components. A 99% confidence ellipse is formed around the cluster of principal component scores of each class and then used as classification criteria. The potential of the adopted methodology is demonstrated by the classification of the imaged regions as training samples.

  11. Smoothing of Fused Spectral Consistent Satellite Images with TV-based Edge Detection

    DEFF Research Database (Denmark)

    Sveinsson, Johannes; Aanæs, Henrik; Benediktsson, Jon Atli


    Several widely used methods have been proposed for fusing high resolution panchromatic data and lower resolution multi-channel data. However, many of these methods fail to maintain the spectral consistency of the fused high resolution image, which is of high importance to many of the applications...

  12. The assessment of the gingival capillary density with orthogonal spectral polarization (OPS) imaging

    NARCIS (Netherlands)

    Lindeboom, J. A.; Mathura, K. R.; Ramsoekh, D.; Harkisoen, S.; Aartman, I. H.; van den Akker, H. P.; Ince, C.


    OBJECTIVE: In this study we evaluated the inter-observer agreement in the assessment of gingival capillary density using Orthogonal Polarization Spectral Imaging. METHODS: In this study gingival capillary density of 100 healthy subjects was determined by 2 independent observers. Agreement was

  13. Estimation of compound distribution in spectral images of tomatoes using independent component analysis

    NARCIS (Netherlands)

    Polder, G.; Heijden, van der G.W.A.M.


    Independent Component Analysis (ICA) is one of the most widely used methods for blind source separation. In this paper we use this technique to estimate the important compounds which play a role in the ripening of tomatoes. Spectral images of tomatoes were analyzed. Two main independent components

  14. The performance of Dynamic Spectral Imaging colposcopy depends on indication for referrals

    NARCIS (Netherlands)

    Louwers, J. A.; Zaal, A.|info:eu-repo/dai/nl/31441911X; Kocken, M.; Berkhof, J.; Papagiannakis, E.; Snijders, P. J. F.; Meijer, C. J. L. M.; Verheijen, RHM|info:eu-repo/dai/nl/071420487


    Objective. A previous study has shown that Dynamic Spectral Imaging (DSI) colposcopy increases the sensitivity of the colposcopic examination in women referred with abnormal cytology. In this study we have re-analyzed the performance of DSI and conventional colposcopy for new referral conditions and

  15. A hyper-temporal remote sensing protocol for high-resolution mapping of ecological sites. (United States)

    Maynard, Jonathan J; Karl, Jason W


    Ecological site classification has emerged as a highly effective land management framework, but its utility at a regional scale has been limited due to the spatial ambiguity of ecological site locations in the U.S. or the absence of ecological site maps in other regions of the world. In response to these shortcomings, this study evaluated the use of hyper-temporal remote sensing (i.e., hundreds of images) for high spatial resolution mapping of ecological sites. We posit that hyper-temporal remote sensing can provide novel insights into the spatial variability of ecological sites by quantifying the temporal response of land surface spectral properties. This temporal response provides a spectral 'fingerprint' of the soil-vegetation-climate relationship which is central to the concept of ecological sites. Consequently, the main objective of this study was to predict the spatial distribution of ecological sites in a semi-arid rangeland using a 28-year time series of normalized difference vegetation index from Landsat TM 5 data and modeled using support vector machine classification. Results from this study show that support vector machine classification using hyper-temporal remote sensing imagery was effective in modeling ecological site classes, with a 62% correct classification. These results were compared to Gridded Soil Survey Geographic database and expert delineated maps of ecological sites which had a 51 and 89% correct classification, respectively. An analysis of the effects of ecological state on ecological site misclassifications revealed that sites in degraded states (e.g., shrub-dominated/shrubland and bare/annuals) had a higher rate of misclassification due to their close spectral similarity with other ecological sites. This study identified three important factors that need to be addressed to improve future model predictions: 1) sampling designs need to fully represent the range of both within class (i.e., states) and between class (i.e., ecological sites

  16. High-resolution two-grating spectrometer for dual wavelength spectral imaging. (United States)

    Gornushkin, I B; Omenetto, N; Smith, B W; Winefordner, J D


    A two-grating high-resolution spectrometer for dual wavelength imaging is demonstrated based on the standard Czerny-Turner mounting with an auxiliary grating and a mirror. A two-dimensional charge-coupled device (CCD) detector in the spectrometer focal plane allows simultaneous detection of two spectral intervals. Each spectrometer grating is driven by a high-precision stepper motor interfaced to a computer via home-made software. The software allows fast tuning of the gratings to a desirable spectral interval anywhere between 200 nm and 800 nm. The spectral interval widths are 2-3 nm for a ''high-resolution'' (2400 grooves/mm) grating and 4-5 nm for a ''low-resolution'' (1200 grooves/mm) grating. The resolution varies between 0.01 nm and 0.02 nm depending on the grating used. The performance of the spectrometer is demonstrated by detecting spectrally resolved images from a back-illuminated template and from a laser-induced plasma. The spectrometer can be useful for two-line spectroscopic diagnostics or can be expanded for multi-element spectral analysis.

  17. Photoplethysmographic imaging via spectrally demultiplexed erythema fluctuation analysis for remote heart rate monitoring (United States)

    Deglint, Jason; Chung, Audrey G.; Chwyl, Brendan; Amelard, Robert; Kazemzadeh, Farnoud; Wang, Xiao Yu; Clausi, David A.; Wong, Alexander


    Traditional photoplethysmographic imaging (PPGI) systems use the red, green, and blue (RGB) broadband measurements of a consumer digital camera to remotely estimate a patients heart rate; however, these broadband RGB signals are often corrupted by ambient noise, making the extraction of subtle fluctuations indicative of heart rate difficult. Therefore, the use of narrow-band spectral measurements can significantly improve the accuracy. We propose a novel digital spectral demultiplexing (DSD) method to infer narrow-band spectral information from acquired broadband RGB measurements in order to estimate heart rate via the computation of motion- compensated skin erythema fluctuation. Using high-resolution video recordings of human participants, multiple measurement locations are automatically identified on the cheeks of an individual, and motion-compensated broadband reflectance measurements are acquired at each measurement location over time via measurement location tracking. The motion-compensated broadband reflectance measurements are spectrally demultiplexed using a non-linear inverse model based on the spectral sensitivity of the camera's detector. A PPG signal is then computed from the demultiplexed narrow-band spectral information via skin erythema fluctuation analysis, with improved signal-to-noise ratio allowing for reliable remote heart rate measurements. To assess the effectiveness of the proposed system, a set of experiments involving human motion in a front-facing position were performed under ambient lighting conditions. Experimental results indicate that the proposed system achieves robust and accurate heart rate measurements and can provide additional information about the participant beyond the capabilities of traditional PPGI methods.

  18. 3D high spectral and spatial resolution imaging of ex vivo mouse brain

    Energy Technology Data Exchange (ETDEWEB)

    Foxley, Sean, E-mail:; Karczmar, Gregory S. [Department of Radiology, University of Chicago, Chicago, Illinois 60637 (United States); Domowicz, Miriam [Department of Pediatrics, University of Chicago, Chicago, Illinois 60637 (United States); Schwartz, Nancy [Department of Pediatrics, Department of Biochemistry and Molecular Biology, University of Chicago, Chicago, Illinois 60637 (United States)


    Purpose: Widely used MRI methods show brain morphology both in vivo and ex vivo at very high resolution. Many of these methods (e.g., T{sub 2}{sup *}-weighted imaging, phase-sensitive imaging, or susceptibility-weighted imaging) are sensitive to local magnetic susceptibility gradients produced by subtle variations in tissue composition. However, the spectral resolution of commonly used methods is limited to maintain reasonable run-time combined with very high spatial resolution. Here, the authors report on data acquisition at increased spectral resolution, with 3-dimensional high spectral and spatial resolution MRI, in order to analyze subtle variations in water proton resonance frequency and lineshape that reflect local anatomy. The resulting information compliments previous studies based on T{sub 2}{sup *} and resonance frequency. Methods: The proton free induction decay was sampled at high resolution and Fourier transformed to produce a high-resolution water spectrum for each image voxel in a 3D volume. Data were acquired using a multigradient echo pulse sequence (i.e., echo-planar spectroscopic imaging) with a spatial resolution of 50 × 50 × 70 μm{sup 3} and spectral resolution of 3.5 Hz. Data were analyzed in the spectral domain, and images were produced from the various Fourier components of the water resonance. This allowed precise measurement of local variations in water resonance frequency and lineshape, at the expense of significantly increased run time (16–24 h). Results: High contrast T{sub 2}{sup *}-weighted images were produced from the peak of the water resonance (peak height image), revealing a high degree of anatomical detail, specifically in the hippocampus and cerebellum. In images produced from Fourier components of the water resonance at −7.0 Hz from the peak, the contrast between deep white matter tracts and the surrounding tissue is the reverse of the contrast in water peak height images. This indicates the presence of a shoulder in

  19. Compressive spectral image super-resolution by using singular value decomposition (United States)

    Marquez, M.; Mejia, Y.; Arguello, Henry


    Compressive sensing (CS) has been recently applied to the acquisition and reconstruction of spectral images (SI). This field is known as compressive spectral imaging (CSI). The attainable resolution of SI depends on the sensor characteristics, whose cost increases in proportion to the resolution. Super-resolution (SR) approaches are usually applied to low-resolution (LR) CSI systems to improve the quality of the reconstructions by solving two consecutive optimization problems. In contrast, this work aims at reconstructing a high resolution (HR) SI from LR compressive measurements by solving a single convex optimization problem based on the fusion of CS and SR techniques. Furthermore, the truncated singular value decomposition is used to alleviate the computational complexity of the inverse reconstruction problem. The proposed method is tested by using the coded aperture snapshot spectral imager (CASSI), and the results are compared to HR-SI images directly reconstructed from LR-SI images by using an SR algorithm via sparse representation. In particular, a gain of up to 1.5 dB of PSNR is attained with the proposed method.

  20. Detection of the power lines in UAV remote sensed images using spectral-spatial methods. (United States)

    Bhola, Rishav; Krishna, Nandigam Hari; Ramesh, K N; Senthilnath, J; Anand, Gautham


    In this paper, detection of the power lines on images acquired by Unmanned Aerial Vehicle (UAV) based remote sensing is carried out using spectral-spatial methods. Spectral clustering was performed using Kmeans and Expectation Maximization (EM) algorithm to classify the pixels into the power lines and non-power lines. The spectral clustering methods used in this study are parametric in nature, to automate the number of clusters Davies-Bouldin index (DBI) is used. The UAV remote sensed image is clustered into the number of clusters determined by DBI. The k clustered image is merged into 2 clusters (power lines and non-power lines). Further, spatial segmentation was performed using morphological and geometric operations, to eliminate the non-power line regions. In this study, UAV images acquired at different altitudes and angles were analyzed to validate the robustness of the proposed method. It was observed that the EM with spatial segmentation (EM-Seg) performed better than the Kmeans with spatial segmentation (Kmeans-Seg) on most of the UAV images. Copyright © 2017 Elsevier Ltd. All rights reserved.

  1. Visual perception enhancement for detection of cancerous oral tissue by multi-spectral imaging (United States)

    Wang, Hsiang-Chen; Tsai, Meng-Tsan; Chiang, Chun-Ping


    Color reproduction systems based on the multi-spectral imaging technique (MSI) for both directly estimating reflection spectra and direct visualization of oral tissues using various light sources are proposed. Images from three oral cancer patients were taken as the experimental samples, and spectral differences between pre-cancerous and normal oral mucosal tissues were calculated at three time points during 5-aminolevulinic acid photodynamic therapy (ALA-PDT) to analyze whether they were consistent with disease processes. To check the successful treatment of oral cancer with ALA-PDT, oral cavity images by swept source optical coherence tomography (SS-OCT) are demonstrated. This system can also reproduce images under different light sources. For pre-cancerous detection, the oral images after the second ALA-PDT are assigned as the target samples. By using RGB LEDs with various correlated color temperatures (CCTs) for color difference comparison, the light source with a CCT of about 4500 K was found to have the best ability to enhance the color difference between pre-cancerous and normal oral mucosal tissues in the oral cavity. Compared with the fluorescent lighting commonly used today, the color difference can be improved by 39.2% from 16.5270 to 23.0023. Hence, this light source and spectral analysis increase the efficiency of the medical diagnosis of oral cancer and aid patients in receiving early treatment.


    Energy Technology Data Exchange (ETDEWEB)



    The authors examine the task of pixel-by-pixel classification of the multispectral and grayscale images typically found in remote-sensing and medical applications. Simple machine learning techniques have long been applied to remote-sensed image classification, but almost always using purely spectral information about each pixel. Humans can often outperform these systems, and make extensive use of spatial context to make classification decisions. They present AFREET: an SVM-based learning system which attempts to automatically construct and refine spatio-spectral features in a somewhat human-inspired fashion. Comparisons with traditionally used machine learning techniques show that AFREET achieves significantly higher performance. The use of spatial context is particularly useful for medical imagery, where multispectral images are still rare.

  3. Systems and methods for selective detection and imaging in coherent Raman microscopy by spectral excitation shaping (United States)

    Xie, Xiaoliang Sunney; Freudiger, Christian; Min, Wei


    A microscopy imaging system is disclosed that includes a light source system, a spectral shaper, a modulator system, an optics system, an optical detector and a processor. The light source system is for providing a first train of pulses and a second train of pulses. The spectral shaper is for spectrally modifying an optical property of at least some frequency components of the broadband range of frequency components such that the broadband range of frequency components is shaped producing a shaped first train of pulses to specifically probe a spectral feature of interest from a sample, and to reduce information from features that are not of interest from the sample. The modulator system is for modulating a property of at least one of the shaped first train of pulses and the second train of pulses at a modulation frequency. The optical detector is for detecting an integrated intensity of substantially all optical frequency components of a train of pulses of interest transmitted or reflected through the common focal volume. The processor is for detecting a modulation at the modulation frequency of the integrated intensity of substantially all of the optical frequency components of the train of pulses of interest due to the non-linear interaction of the shaped first train of pulses with the second train of pulses as modulated in the common focal volume, and for providing an output signal for a pixel of an image for the microscopy imaging system.

  4. Land cover mapping based on random forest classification of multitemporal spectral and thermal images. (United States)

    Eisavi, Vahid; Homayouni, Saeid; Yazdi, Ahmad Maleknezhad; Alimohammadi, Abbas


    Thematic mapping of complex landscapes, with various phenological patterns from satellite imagery, is a particularly challenging task. However, supplementary information, such as multitemporal data and/or land surface temperature (LST), has the potential to improve the land cover classification accuracy and efficiency. In this paper, in order to map land covers, we evaluated the potential of multitemporal Landsat 8's spectral and thermal imageries using a random forest (RF) classifier. We used a grid search approach based on the out-of-bag (OOB) estimate of error to optimize the RF parameters. Four different scenarios were considered in this research: (1) RF classification of multitemporal spectral images, (2) RF classification of multitemporal LST images, (3) RF classification of all multitemporal LST and spectral images, and (4) RF classification of selected important or optimum features. The study area in this research was Naghadeh city and its surrounding region, located in West Azerbaijan Province, northwest of Iran. The overall accuracies of first, second, third, and fourth scenarios were equal to 86.48, 82.26, 90.63, and 91.82%, respectively. The quantitative assessments of the results demonstrated that the most important or optimum features increase the class separability, while the spectral and thermal features produced a more moderate increase in the land cover mapping accuracy. In addition, the contribution of the multitemporal thermal information led to a considerable increase in the user and producer accuracies of classes with a rapid temporal change behavior, such as crops and vegetation.

  5. Image de-noising via spectral distribution similarity analysis for ultrasonic non-destructive evaluation (United States)

    Xiao, B.; Li, M.; Gongzhang, R.; O'Leary, R. L.; Gachagan, A.


    Ultrasonic detection and characterization of flaws in coarse-grained materials exhibiting heterogeneous and scattering microstructure is of particular importance across many industries, but remains challenging. Most spectral based denoising methods in the literature are sensitive to material properties, which necessitate a troublesome parameter optimization process and consequently impede their application into ultrasonic image processing. In order to improve flaw visibility in an image, we propose a novel and robust clutter suppression method through spectral distribution similarity analysis (SDSA). This method isometrically segments all the time-series data in a dataset acquired by the Full-Matrix-Capture technique and then censuses the spectral distribution of global segments and of local segments for every focusing point in the Total-Focusing- Method image. The coefficient computed by measuring the similarity between the two spectral distributions reveals the possibility of a legitimate flaw indication. Experiments on two highly scattering samples were conducted to validate this method. By applying SDSA, crack visibility is greatly enhanced with an average >20 dB target-to-noise ratio enhancement for a stainless steel weld sample, whilst ˜30dB improvement for an austenitic steel sample. The proposed technique retains excellent performance for both samples when the selected segment length is varied, proving its robustness and highlighting its potential for application across various materials.

  6. Uncertainty analysis of in-flight spectral calibration for hyperspectral imaging spectrometers (United States)

    Zhao, Huijie; Geng, Ruonan; Jia, Guorui; Wang, Daming


    Hyperspectral imaging instrument performance, especially spectral response parameters, may change when the sensors work in-flight due to vibrations, temperature and pressure changes compared with the laboratory status. In order to derive valid information from imaging data, accurate spectral calibration accompanied by uncertainty analysis to the data must be made. The purpose of this work is to present a process to estimate the uncertainties of in-flight spectral calibration parameters by analyzing the sources of uncertainty and calculating their sensitivity coefficients. In the in-flight spectral calibration method, the band-center and bandwidth determinations are made by correlating the in-flight sensor measured radiance with reference radiance. In this procedure, the uncertainty analysis is conducted separately for three factors: (a) the radiance calculated from imaging data; (b) the reference data; (c) the matching process between the above two items. To obtain the final uncertainty, contributions due to every impact factor must be propagated through this process. Analyses have been made using above process for the Hyperion data. The results show that the shift of band-center in the oxygen absorption (about 762nm), compared with the value measured in the lab, is less than 0.9nm with uncertainties ranging from 0.063nm to 0.183nm related to spatial distribution along the across-track direction of the image, the change of bandwidth is less than 1nm with uncertainties ranging from 0.066nm to 0.166nm. This results verify the validity of the in-flight spectral calibration process.

  7. Chemical imaging and microspectroscopy with spectral focusing coherent anti-Stokes Raman scattering (United States)

    Chen, Bi-Chang; Sung, Jiha; Wu, Xiaoxi; Lim, Sang-Hyun


    We demonstrate two different coherent anti-Stokes Raman scattering (CARS) microscopy and microspectroscopy methods based on the spectral focusing mechanism. The first method uses strongly chirped broadband pulses from a single Ti:sapphire laser and generates CARS signals at the fingerprint region. Fast modulation of the time delay between the pump and Stokes laser pulses coupled with lock-in signal detection significantly reduces the nonresonant background and produces Raman-like CARS signals with a spectral resolution of 20 cm-1. The second method generates CARS signals in the CH (carbon-hydrogen) stretching region with IR supercontinuum pulses from a photonic crystal fiber. The spectral resolution of 30 cm-1 is achieved. Maximum entropy method is used to retrieve a Raman-equivalent CARS spectrum from lipid membranes. Chemical imaging and microspectroscopy are demonstrated with various samples.

  8. [Research on extraction method of water body with DS spectral enhancement based on HJ-1 images]. (United States)

    Deng, Rui; Huang, Jing-Feng; Wang, Fu-Min


    Natural disaster is one of the major global issues, and it is an important premise for disaster prevention and reduction to monitor it. In the present paper, multi-temporal HJ-1 images pre- and posto-typhoon Morakot were used. First, radiometric calibration and registration were done, then, decorrelation stretch (DS) was applied, and finally, maximum likelihood classification (MLC) was adopted to extract water body and monitor change of water body caused by typhoon Morakot. The results show that after DS spectral enhancement, the correlations among bands decrease and spectral differences increase, and it is helpful to identify surface features. The accuracy assessment demonstrates that the overall accuracies and Kappa coefficients of four phases are higher, above 96.0% and 0.94 respectively, than that of direct MLC without DS spectral enhancement. It is beneficial to scheduling flood discharge and ensuring the safety of reservoir downstream by comparing extracted multi-temporal water bodies.

  9. Overhead Detection of Underground Nuclear Explosions by Multi-Spectral and Infrared Imaging (United States)

    Henderson, John R.; Smith, Milton O.; Zelinski, Michael E.


    The Comprehensive Nuclear Test Ban Treaty allows for Multi-Spectral and Infrared Imaging from an aircraft and on the ground to help reduce the search area for an underground nuclear explosion from the initial 1,000 km2. Satellite data, primarily from Landsat, have been used as a surrogate for aircraft data to investigate whether there are any multi-spectral features associated with the nuclear tests in Pakistan, India or North Korea. It is shown that there are multi-spectral observables on the ground that can be associated with the nominal surface ground zero for at least some of these explosions, and that these are likely to be found by measurements allowed by the treaty.

  10. A hyperspectral imaging system for the evaluation of the human iris spectral reflectance (United States)

    Di Cecilia, Luca; Marazzi, Francesco; Rovati, Luigi


    According to previous studies, the measurement of the human iris pigmentation can be exploited to detect certain eye pathological conditions in their early stage. In this paper, we propose an instrument and a method to perform hyperspectral quantitative measurements of the iris spectral reflectance. The system is based on a simple imaging setup, which includes a monochrome camera mounted on a standard ophthalmic microscope movement controller, a monochromator, and a flashing LED-based slit lamp. To assure quantitative measurements, the system is properly calibrated against a NIST reflectance standard. Iris reflectance images can be obtained in the spectral range 495-795 nm with a resolution of 25 nm. Each image consists of 1280 x 1024 pixels having a spatial resolution of 18 μm. Reflectance spectra can be calculated both from discrete areas of the iris and as the average of the whole iris surface. Preliminary results suggest that hyperspectral imaging of the iris can provide much more morphological and spectral information with respect to conventional qualitative colorimetric methods.

  11. Noninvasive tumor detection using spectrally-resolved in-vivo imaging (United States)

    Kostenich, Gennady; Kimel, Sol; Malik, Zvi; Orenstein, Arie


    A novel spectral image-analysis system was used for tumor fluorescence and reflectance imaging in an animal model and in patients. Transcutaneous fluorescence imaging was carried out on Balb/c mice bearing subcutaneous C26 colon carcinoma after intraperitoneal (i.p.) administration of 5-aminolevulinic acid (ALA), a metabolic precursor of protoporphyrin-IX (PP), and of a novel photosensitizer tetrahydroporphyrin (THP). Tumors were clearly observable by fluorescence detection using green light excitation. Tumor versus normal tissue uptake of the photosensitizing agents was determined by monitoring fluorescence intensity. Maximal PP accumulation in tumor was observed 3 h after i.p. injection of ALA, whereas THP showed selective accumulation in tumor 24 h after administration. Reflectance spectroscopy was employed to study pigmented human skin lesions (nevus, pigmented BCC and pigmented melanoma). In the near-infrared region (800-880 nm) pigmented BCC and melanoma exhibited a differently shaped reflectance spectrum compared to normal skin and nevus. Spatially and spectrally resolved imaging, in combination with mathematical algorithms (such as normalization, spectral similarity mapping and division) allowed unambiguous detection of malignancies. Optical biopsy results from a total of 51 patients showed 45 benign nevi, 3 pigmented BCC and 3 malignant melanomas, as confirmed by histology.

  12. Dual energy spectral CT imaging for the evaluation of small hepatocellular carcinoma microvascular invasion. (United States)

    Yang, Chuang-Bo; Zhang, Shuang; Jia, Yong-Jun; Yu, Yong; Duan, Hai-Feng; Zhang, Xi-Rong; Ma, Guang-Ming; Ren, Chenglong; Yu, Nan


    To study the clinical value of dual-energy spectral CT in the quantitative assessment of microvascular invasion of small hepatocellular carcinoma. This study was approved by our ethics committee. 50 patients with small hepatocellular carcinoma who underwent contrast enhanced spectral CT in arterial phase (AP) and portal venous phase (VP) were enrolled. Tumour CT value and iodine concentration (IC) were measured from spectral CT images. The slope of spectral curve, normalized iodine concentration (NIC, to abdominal aorta) and ratio of IC difference between AP and VP (RICAP-VP: [RICAP-VP=(ICAP-ICVP)/ICAP]) were calculated. Tumours were identified as either with or without microvascular invasion based on pathological results. Measurements were statistically compared using independent samples t test. The receiver operating characteristic (ROC) analysis was used to evaluate the diagnostic performance of tumours microvascular invasion assessment. The 70keV images were used to simulate the results of conventional CT scans for comparison. 56 small hepatocellular carcinomas were detected with 37 lesions (Group A) with microvascular invasion and 19 (Group B) without. There were significant differences in IC, NIC and slope in AP and RICAP-VP between Group A (2.48±0.70mg/ml, 0.23±0.05, 3.39±1.01 and 0.28±0.16) and Group B (1.65±0.47mg/ml, 0.15±0.05, 2.22±0.64 and 0.03±0.24) (all pSpectral CT provides additional quantitative parameters than conventional CT to improve the differentiation between small hepatocellular carcinoma with and without microvascular invasion. Quantitative iodine concentration measurement in spectral CT may be used to provide a new method to improve the evaluation for small hepatocellular carcinoma microvascular invasion. Copyright © 2017 Elsevier B.V. All rights reserved.

  13. A Study on Spectral Signature Analysis of Wetland Vegetation Based on Ground Imaging Spectrum Data (United States)

    Ling, Chengxing; Liu, Hua; Ju, Hongbo; Zhang, Huaiqing; You, Jia; Li, Weina


    The objective of this study was to verify the application of imaging spectrometer in wetland vegetation remote sensing monitoring, based on analysis of wetland vegetation spectral features. Spectral information of Carex vegetation spectral data under different water environment was collected bySOC710VP and ASD FieldSpec 3; Meanwhile, the chlorophyll contents of wheat leaves were tested in the lab. A total 9 typical vegetation indices were calculated by using two instruments’ data which were spectral values from 400nm to 1000 nm. Then features between the same vegetation indices and soil water contents for two applications were analyzed and compared. The results showed that there were same spectrum curve trends of Carex vegetation (soil moisture content of 51%, 32%, 14% and three regional comparative analysis)reflectance between SOC710VP and ASD FieldSpec 3, including the two reflectance peak of 550nm and 730 nm, two reflectance valley of 690 nm and 970nm, and continuous near infrared reflectance platform. However, The two also have a very clear distinction: (1) The reflection spectra of SOC710VP leaves of Carex Carex leaf spectra in the three soil moisture environment values are greater than ASD FieldSpec 3 collected value; (2) The SOC710VP reflectivity curve does not have the smooth curve of the original spectrum measured by the ASD FieldSpec 3, the amplitude of fluctuation is bigger, and it is more obvious in the near infrared band. It is concluded that SOC710VP spectral data are reliable, with the image features, spectral curve features reliable. It has great potential in the research of hyperspectral remote sensing technology in the development of wetland near earth, remote sensing monitoring of wetland resources.

  14. Virtual spectral multiplexing for applications in in-situ imaging microscopy of transient phenomena (United States)

    Deglint, Jason; Kazemzadeh, Farnoud; Shafiee, Mohammad Javad; Li, Edward; Khodadad, Iman; Saini, Simarjeet S.; Wong, Alexander; Clausi, David A.


    Multispectral sensing is specifically designed to provide quantitative spectral information about various materials or scenes. Using spectral information, various properties of objects can be measured and analysed. Microscopy, the observing and imaging of objects at the micron- or nano-scale, is one application where multispectral sensing can be advantageous, as many fields of science and research that use microscopy would benefit from observing a specimen in multiple wavelengths. Multispectral microscopy is available, but often requires the operator of the device to switch filters which is a labor intensive process. Furthermore, the need for filter switching makes such systems particularly limiting in cases where the sample contains live species that are constantly moving or exhibit transient phenomena. Direct methods for capturing multispectral data of a live sample simultaneously can also be challenging for microscopy applications as it requires an elaborate optical systems design which uses beamsplitters and a number of detectors proportional to the number of bands sought after. Such devices can therefore be quite costly to build and difficult to maintain, particularly for microscopy. In this paper, we present the concept of virtual spectral demultiplexing imaging (VSDI) microscopy for low-cost in-situ multispectral microscopy of transient phenomena. In VSDI microscopy, the spectral response of a color detector in the microscope is characterized and virtual spectral demultiplexing is performed on the simultaneously-acquired broadband detector measurements based on the developed spectral characterization model to produce microscopic imagery at multiple wavelengths. The proposed VSDI microscope was used to observe colorful nanowire arrays at various wavelengths simultaneously to illustrate its efficacy.

  15. HyperPeer

    DEFF Research Database (Denmark)

    Larsen, R.D.; Bouvin, N.O.


    This paper presents HyperPeer, a framework for developing peer-to-peer based hypermedia. The distribution of hypermedia structures is handled through a peer-to-peer (P2P) network, allowing for highly scalable sharing between users. A central challenge of all decentralized systems is to locate...

  16. The Hyper Tourism Academy

    DEFF Research Database (Denmark)

    Munar, Ana Maria

    those cultures take for granted. To do this I will introduce the identity of a contemporary super-hero 'The Hyper Tourism Researcher'. This ideal archetype will be presented to help us reflect on the questions of speed and busyness (why do we all run so much?), meaning and purpose (towards what end...

  17. Radical advancement in multi-spectral imaging for autonomous vehicles (UAVs, UGVs, and UUVs) using active compensation.

    Energy Technology Data Exchange (ETDEWEB)

    Clark, Brian F.; Bagwell, Brett E.; Wick, David Victor


    The purpose of this LDRD was to demonstrate a compact, multi-spectral, refractive imaging systems using active optical compensation. Compared to a comparable, conventional lens system, our system has an increased operational bandwidth, provides for spectral selectivity and, non-mechanically corrects aberrations induced by the wavelength dependent properties of a passive refractive optical element (i.e. lens). The compact nature and low power requirements of the system lends itself to small platforms such as autonomous vehicles. In addition, the broad spectral bandwidth of our system would allow optimized performance for both day/night use, and the multi-spectral capability allows for spectral discrimination and signature identification.

  18. Spectral analysis of the Crab Nebula and GRB 160530A with the Compton Spectrometer and Imager (United States)

    Sleator, Clio; Boggs, Steven E.; Chiu, Jeng-Lun; Kierans, Carolyn; Lowell, Alexander; Tomsick, John; Zoglauer, Andreas; Amman, Mark; Chang, Hsiang-Kuang; Tseng, Chao-Hsiung; Yang, Chien-Ying; Lin, Chih H.; Jean, Pierre; von Ballmoos, Peter


    The Compton Spectrometer and Imager (COSI) is a balloon-borne soft gamma-ray (0.2-5 MeV) telescope designed to study astrophysical sources including gamma-ray bursts and compact objects. As a compact Compton telescope, COSI has inherent sensitivity to polarization. COSI utilizes 12 germanium detectors to provide excellent spectral resolution. On May 17, 2016, COSI was launched from Wanaka, New Zealand and completed a successful 46-day flight on NASA’s new Superpressure balloon. To perform spectral analysis with COSI, we have developed an accurate instrument model as required for the response matrix. With carefully chosen background regions, we are able to fit the background-subtracted spectra in XSPEC. We have developed a model of the atmosphere above COSI based on the NRLMSISE-00 Atmosphere Model to include in our spectral fits. The Crab and GRB 160530A are among the sources detected during the 2016 flight. We present spectral analysis of these two point sources. Our GRB 160530A results are consistent with those from other instruments, confirming COSI’s spectral abilities. Furthermore, we discuss prospects for measuring the Crab polarization with COSI.

  19. Programmable spectral engine design of hyperspectral image projectors based on digital micro-mirror device (DMD) (United States)

    Wang, Xicheng; Gao, Jiaobo; Wu, Jianghui; Li, Jianjun; Cheng, Hongliang


    Recently, hyperspectral image projectors (HIP) have been developed in the field of remote sensing. For the advanced performance of system-level validation, target detection and hyperspectral image calibration, HIP has great possibility of development in military, medicine, commercial and so on. HIP is based on the digital micro-mirror device (DMD) and projection technology, which is capable to project arbitrary programmable spectra (controlled by PC) into the each pixel of the IUT1 (instrument under test), such that the projected image could simulate realistic scenes that hyperspectral image could be measured during its use and enable system-level performance testing and validation. In this paper, we built a visible hyperspectral image projector also called the visible target simulator with double DMDs, which the first DMD is used to product the selected monochromatic light from the wavelength of 410 to 720 um, and the light come to the other one. Then we use computer to load image of realistic scenes to the second DMD, so that the target condition and background could be project by the second DMD with the selected monochromatic light. The target condition can be simulated and the experiment could be controlled and repeated in the lab, making the detector instrument could be tested in the lab. For the moment, we make the focus on the spectral engine design include the optical system, research of DMD programmable spectrum and the spectral resolution of the selected spectrum. The detail is shown.

  20. Identification and Evaluation of Composition in Food Powder Using Point-Scan Raman Spectral Imaging

    Directory of Open Access Journals (Sweden)

    Sagar Dhakal


    Full Text Available This study used Raman spectral imaging coupled with self-modeling mixture analysis (SMA for identification of three components mixed into a complex food powder mixture. Vanillin, melamine, and sugar were mixed together at 10 different concentration level (1% to 10%, w/w into powdered non-dairy creamer. SMA was used to decompose the complex multi-component spectra and extract the pure component spectra and corresponding contribution images. Spectral information divergence (SID values of the extracted pure component spectra and reference component spectra were computed to identify the components corresponding to the extracted spectra. The contribution images obtained via SMA were used to create Raman chemical images of the mixtures samples, to which threshold values were applied to obtain binary detection images of the components at all concentration levels. The detected numbers of pixels of each component in the binary images was found to be strongly correlated with the actual sample concentrations (correlation coefficient of 0.99 for all components. The results show that this method can be used for simultaneous identification of different components and estimation of their concentrations for authentication or quantitative inspection purposes.

  1. Widefield in vivo spectral and fluorescence imaging microscopy of microvessel blood supply and oxygenation (United States)

    Lee, Jennifer; Kozikowski, Raymond; Wankhede, Mamta; Sorg, Brian S.


    Abnormal microvascular function and angiogenesis are key components of various diseases that can contribute to the perpetuation of the disease. Several skin diseases and ophthalmic pathologies are characterized by hypervascularity, and in cancer the microvasculature of tumors is structurally and functionally abnormal. Thus, the microvasculature can be an important target for treatment of diseases characterized by abnormal microvasculature. Motivated largely by cancer research, significant effort has been devoted to research on drugs that target the microvasculature. Several vascular targeting drugs for cancer therapy are in clinical trials and approved for clinical use, and several off-label uses of these drugs have been reported for non-cancer diseases. The ability to image and measure parameters related to microvessel function preclinically in laboratory animals can be useful for development and comparison of vascular targeting drugs. For example, blood supply time measurements give information related to microvessel morphology and can be measured with first-pass fluorescence imaging. Hemoglobin saturation measurements give an indication of microvessel oxygen transport and can be measured with spectral imaging. While each measurement individually gives some information regarding microvessel function, the measurements together may yield even more information since theoretically microvessel morphology can influence microvessel oxygenation, especially in metabolically active tissue like tumors. However, these measurements have not yet been combined. In this study, we report the combination of blood supply time imaging and hemoglobin saturation imaging of microvessel networks in tumors using widefield fluorescence and spectral imaging, respectively. The correlation between the measurements in a mouse mammary tumor is analyzed.

  2. Optical perception for detection of cutaneous T-cell lymphoma by multi-spectral imaging (United States)

    Hsiao, Yu-Ping; Wang, Hsiang-Chen; Chen, Shih-Hua; Tsai, Chung-Hung; Yang, Jen-Hung


    In this study, the spectrum of each picture element of the patient’s skin image was obtained by multi-spectral imaging technology. Spectra of normal or pathological skin were collected from 15 patients. Principal component analysis and principal component scores of skin spectra were employed to distinguish the spectral characteristics with different diseases. Finally, skin regions with suspected cutaneous T-cell lymphoma (CTCL) lesions were successfully predicted by evaluation and classification of the spectra of pathological skin. The sensitivity and specificity of this technique were 89.65% and 95.18% after the analysis of about 109 patients. The probability of atopic dermatitis and psoriasis patients misinterpreted as CTCL were 5.56% and 4.54%, respectively.

  3. Near-IR Spectral Imaging of Semiconductor Absorption Sites in Integrated Circuits

    Directory of Open Access Journals (Sweden)

    E. C. Samson


    Full Text Available We derive spectral maps of absorption sites in integrated circuits (ICs by varying the wavelength of the optical probe within the near-IR range. This method has allowed us to improve the contrast of the acquired images by revealing structures that have a different optical absorption from neighboring sites. A false color composite image from those acquired at different wavelengths is generated from which the response of each semiconductor structure can be deduced. With the aid of the spectral maps, nonuniform absorption was also observed in a semiconductor structure located near an electrical overstress defect. This method may prove important in failure analysis of ICs by uncovering areas exhibiting anomalous absorption, which could improve localization of defective edifices in the semiconductor parts of the microchip

  4. Spectral imaging of O(2) infrared atmospheric airglow with an InGaAs array detector. (United States)

    Doushkina, V V; Wiens, R H; Thomas, P J; Peterson, R N; Shepherd, G G


    A linear InGaAs array was used in an interference filter spectral imager to monitor the twilight decay of the O(2) Infrared Atmospheric (0-1) band in the twilight airglow. The interference filter was centered at 1.582 μm and had a bandwidth (full width at half-maximum) of 1.0 nm. The imaging lens was a simple doublet, and a Fresnel lens was used for smearing any possible sky inhomogeneities. Spectra measured over Toronto in October 1994 show that the sensitivity and spectral discrimination against the contaminating OH spectrum are potentially sufficient to infer meaningful rotational temperatures. The improvements that would result from an area InGaAs array are discussed.

  5. Efficiency of the spectral-spatial classification of hyperspectral imaging data (United States)

    Borzov, S. M.; Potaturkin, O. I.


    The efficiency of methods of the spectral-spatial classification of similarly looking types of vegetation on the basis of hyperspectral data of remote sensing of the Earth, which take into account local neighborhoods of analyzed image pixels, is experimentally studied. Algorithms that involve spatial pre-processing of the raw data and post-processing of pixel-based spectral classification maps are considered. Results obtained both for a large-size hyperspectral image and for its test fragment with different methods of training set construction are reported. The classification accuracy in all cases is estimated through comparisons of ground-truth data and classification maps formed by using the compared methods. The reasons for the differences in these estimates are discussed.

  6. An Improved Combination of Spectral and Spatial Features for Vegetation Classification in Hyperspectral Images

    Directory of Open Access Journals (Sweden)

    Yuanyuan Fu


    Full Text Available Due to the advances in hyperspectral sensor technology, hyperspectral images have gained great attention in precision agriculture. In practical applications, vegetation classification is usually required to be conducted first and then the vegetation of interest is discriminated from the others. This study proposes an integrated scheme (SpeSpaVS_ClassPair_ScatterMatrix for vegetation classification by simultaneously exploiting image spectral and spatial information to improve vegetation classification accuracy. In the scheme, spectral features are selected by the proposed scatter-matrix-based feature selection method (ClassPair_ScatterMatrix. In this method, the scatter-matrix-based class separability measure is calculated for each pair of classes and then averaged as final selection criterion to alleviate the problem of mutual redundancy among the selected features, based on the conventional scatter-matrix-based class separability measure (AllClass_ScatterMatrix. The feature subset search is performed by the sequential floating forward search method. Considering the high spectral similarity among different green vegetation types, Gabor features are extracted from the top two principal components to provide complementary spatial features for spectral features. The spectral features and Gabor features are stacked into a feature vector and then the ClassPair_ScatterMatrix method is used on the formed vector to overcome the over-dimensionality problem and select discriminative features for vegetation classification. The final features are fed into support vector machine classifier for classification. To verify whether the ClassPair_ScatterMatrix method could well avoid selecting mutually redundant features, the mean square correlation coefficients were calculated for the ClassPair_ScatterMatrix method and AllClass_ScatterMatrix method. The experiments were conducted on a widely used agricultural hyperspectral image. The experimental results showed

  7. High-speed quantitative phase imaging using time-stretch spectral shearing contrast (Conference Presentation) (United States)

    Bosworth, Bryan; Foster, Mark A.


    Photonic time-stretch microscopy (TSM) provides an ideal platform for high-throughput imaging flow cytometry, affording extremely high shutter speeds and frame rates with high sensitivity. In order to resolve weakly scattering cells in biofluid and solve the issue of signal-to-noise in cell labeling specificity of biomarkers in imaging flow cytometry, several quantitative phase (QP) techniques have recently been adapted to TSM. However, these techniques have relied primarily on sensitive free-space optical configurations to generate full electric field measurements. The present work draws from the field of ultrashort pulse characterization to leverage the coherence of the ultrashort optical pulses integral to all TSM systems in order to do self-referenced single-shot quantitative phase imaging in a TSM system. Self-referencing is achieved via spectral shearing interferometry in an exceptionally stable and straightforward Sagnac loop incorporating an electro-optic phase modulator and polarization-maintaining fiber that produce sheared and unsheared copies of the pulse train with an inter-pulse delay determined by polarization mode dispersion. The spectral interferogram then yields a squared amplitude and a phase derivative image that can be integrated for conventional phase. We apply this spectral shearing contrast microscope to acquire QP images on a high-speed flow microscope at 90-MHz line rates with <400 pixels per line. We also consider the extension of this technique to compressed sensing (CS) acquisition by intensity modulating the interference spectra with pseudorandom binary waveforms to reconstruct the images from a highly sub-Nyquist number of random inner products, providing a path to even higher operating rates and reduced data storage requirements.

  8. BIM for existing facilities: feasibility of spectral image integration to 3D point cloud data

    Directory of Open Access Journals (Sweden)

    Amano Kinjiro


    Full Text Available Accurate geometrical and spatial information of the built environment can be accurately acquired and the resulting 3D point cloud data is required to be processed to construct the digital model, Building Information Modelling (BIM for existing facilities. Point cloud by laser scanning over the buildings and facilities has been commonly used, but the data requires external information so that any objects and materials can be correctly identified and classified. A number of advanced data processing methods have been developed, such as the use of colour information to attach semantic information. However, the accuracy of colour information depends largely on the scene environment where the image is acquired. The limited number of spectral channels on conventional RGB camera often fails to extract important information about surface material, despite spectral surface reflectance can represent a signature of the material. Hyperspectral imaging can, instead, provide precise representation of spatial and spectral information. By implementing such information to 3D point cloud, the efficiency of material detection and classification in BIM should be significantly improved. In this work, the feasibility of the image integration and discuss practical difficulties in the development.

  9. Spatial-phase-shift imaging interferometry using a spectrally modulated white light source. (United States)

    Epshtein, Shlomi; Harris, Alon; Yaacobovitz, Igor; Locketz, Garrett; Yitzhaky, Yitzhak; Arieli, Yoel


    An extension of the white light spatial-phase-shift (WLSPS) for object surface measurements is described. Using WLSPS, surface measurements can be obtained from any real object image without the need of a reference beam, thus achieving inherent vibration cancellation. The surface topography is obtained by acquiring multiple images of an object illuminated by a spectrally modulated white light source and using an appropriate algorithm. The modulation of the light source obviates the need for the continuous phase delay to obtain the interferograms.

  10. Spectral-domain and swept-source OCT imaging of asteroid hyalosis: a case report. (United States)

    Alasil, Tarek; Adhi, Mehreen; Liu, Jonathan J; Fujimoto, James G; Duker, Jay S; Baumal, Caroline R


    A 72-year-old man with diabetes was referred to the retina clinic for diabetic retinopathy. Detailed funduscopic examination of the left eye was limited by prominent asteroid hyalosis. Spectral-domain (SD) and swept-source (SS) optical coherence tomography (OCT) were utilized to examine the vitreous, vitreoretinal interface, and the morphology of the retina. Asteroid hyalosis induced artifacts of the OCT images, which resolved when the appropriate imaging protocols were applied. SS-OCT may show superior diagnostic and preoperative capabilities when compared to SD-OCT in the settings of asteroid hyalosis-induced media opacity.

  11. Spectral domain OCT to diagnose clinically inapparent hypotony maculopathy using 3D image rendering software (United States)

    Raja, Muhammad; Boukavala, Stavoroula; Goldsmith, Craig; Mukherji, Subhanjan


    Three-dimensional (3D) image rendering capability of a commercially available 3D-optical coherence tomogram (OCT) system was used to diagnose a subclinical but symptomatic case of hypotony maculopathy in an eye with significant cataract and an only-eyed patient. Bleb revision improved intraocular pressure and symptoms, confirmed by repeat OCT imaging. Hypotony maculopathy may be subclinical and difficult to diagnose particularly in eyes with non-clear ocular media. Use of spectral domain OCT can be complementary to improve patient outcomes. PMID:23264160

  12. Sparse modeling of EELS and EDX spectral imaging data by nonnegative matrix factorization

    Energy Technology Data Exchange (ETDEWEB)

    Shiga, Motoki, E-mail: [Department of Electrical, Electronic and Computer Engineering, Gifu University, 1-1, Yanagido, Gifu 501-1193 (Japan); Tatsumi, Kazuyoshi; Muto, Shunsuke [Advanced Measurement Technology Center, Institute of Materials and Systems for Sustainability, Nagoya University, Chikusa-ku, Nagoya 464-8603 (Japan); Tsuda, Koji [Graduate School of Frontier Sciences, University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa 277-8561 (Japan); Center for Materials Research by Information Integration, National Institute for Materials Science, 1-2-1 Sengen, Tsukuba 305-0047 (Japan); Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology, 2-4-7 Aomi Koto-ku, Tokyo 135-0064 (Japan); Yamamoto, Yuta [High-Voltage Electron Microscope Laboratory, Institute of Materials and Systems for Sustainability, Nagoya University, Chikusa-ku, Nagoya 464-8603 (Japan); Mori, Toshiyuki [Environment and Energy Materials Division, National Institute for Materials Science, 1-1 Namiki, Tsukuba 305-0044 (Japan); Tanji, Takayoshi [Division of Materials Research, Institute of Materials and Systems for Sustainability, Nagoya University, Chikusa-ku, Nagoya 464-8603 (Japan)


    Advances in scanning transmission electron microscopy (STEM) techniques have enabled us to automatically obtain electron energy-loss (EELS)/energy-dispersive X-ray (EDX) spectral datasets from a specified region of interest (ROI) at an arbitrary step width, called spectral imaging (SI). Instead of manually identifying the potential constituent chemical components from the ROI and determining the chemical state of each spectral component from the SI data stored in a huge three-dimensional matrix, it is more effective and efficient to use a statistical approach for the automatic resolution and extraction of the underlying chemical components. Among many different statistical approaches, we adopt a non-negative matrix factorization (NMF) technique, mainly because of the natural assumption of non-negative values in the spectra and cardinalities of chemical components, which are always positive in actual data. This paper proposes a new NMF model with two penalty terms: (i) an automatic relevance determination (ARD) prior, which optimizes the number of components, and (ii) a soft orthogonal constraint, which clearly resolves each spectrum component. For the factorization, we further propose a fast optimization algorithm based on hierarchical alternating least-squares. Numerical experiments using both phantom and real STEM-EDX/EELS SI datasets demonstrate that the ARD prior successfully identifies the correct number of physically meaningful components. The soft orthogonal constraint is also shown to be effective, particularly for STEM-EELS SI data, where neither the spatial nor spectral entries in the matrices are sparse. - Highlights: • Automatic resolution of chemical components from spectral imaging is considered. • We propose a new non-negative matrix factorization with two new penalties. • The first penalty is sparseness to choose the number of components from data. • Experimental results with real data demonstrate effectiveness of our method.

  13. Using Non-Invasive Multi-Spectral Imaging to Quantitatively Assess Tissue Vasculature

    Energy Technology Data Exchange (ETDEWEB)

    Vogel, A; Chernomordik, V; Riley, J; Hassan, M; Amyot, F; Dasgeb, B; Demos, S G; Pursley, R; Little, R; Yarchoan, R; Tao, Y; Gandjbakhche, A H


    This research describes a non-invasive, non-contact method used to quantitatively analyze the functional characteristics of tissue. Multi-spectral images collected at several near-infrared wavelengths are input into a mathematical optical skin model that considers the contributions from different analytes in the epidermis and dermis skin layers. Through a reconstruction algorithm, we can quantify the percent of blood in a given area of tissue and the fraction of that blood that is oxygenated. Imaging normal tissue confirms previously reported values for the percent of blood in tissue and the percent of blood that is oxygenated in tissue and surrounding vasculature, for the normal state and when ischemia is induced. This methodology has been applied to assess vascular Kaposi's sarcoma lesions and the surrounding tissue before and during experimental therapies. The multi-spectral imaging technique has been combined with laser Doppler imaging to gain additional information. Results indicate that these techniques are able to provide quantitative and functional information about tissue changes during experimental drug therapy and investigate progression of disease before changes are visibly apparent, suggesting a potential for them to be used as complementary imaging techniques to clinical assessment.

  14. Orthogonal polarization spectral (OPS) imaging and topographical characteristics of oral squamous cell carcinoma. (United States)

    Lindeboom, Jerome A; Mathura, Keshen R; Ince, Can


    Tumor microcirculatory characteristics until now have only been assessed by histological examination of biopsies or invasive imaging technique. The recent introduction of orthogonal polarization spectral (OPS) imaging as a new tool for in vivo visualization of human microcirculation makes it possible to acquire high resolution images of the oral mucosa. In this study we report the microcirculatory changes in ten patients with oral squamous cell carcinoma of the tongue and compared the images to the normal contralateral side as the control. All carcinomas were T2 tumors without evidence for lymph node metastasis. The carcinomas were characterized by chaotic and dilated vessels accompanied by numerous areas of haemorrhage. The OPS technique seems very promising in the assessment of oral squamous cell carcinoma microcirculatory characteristics and may possibly play a future role in both the detection of early oral mucosal vascular aberrations and the effect of anti-tumor agents on the tumor microvasculature.

  15. Real-time and static in vivo ophthalmic imaging by spectral optical coherence tomography (United States)

    Wojtkowski, Maciej; Bajraszewski, Tomasz; Targowski, Piotr; Kowalczyk, Andrzej


    Fast Spectral Optical Coherence Tomography (SOCT) technique is used to perform cross sectional and three-dimensional ophthalmic images. Static, real-time and 3-D in vivo images of the human cornea, lens, iris, corneo-scleral junction, retinal layers, optic disc and macula lutea are presented. The ophthalmic application of SOCT is promising because this technique ensures fast acquisition with relatively low optical power of incident light. All demonstrated images are obtained with the aid of SOCT instrument, which was constructed in the optical laboratory of medical physics group at Nicolaus Copernicus University (Torun, Poland). What is to our knowledge there are the first good quality (>90dB sensitivity) ophthalmic OCT images obtained by technique, which is different than time domain OCT.

  16. A dynamic attenuator improves spectral imaging with energy-discriminating, photon counting detectors. (United States)

    Hsieh, Scott S; Pelc, Norbert J


    Energy-discriminating, photon counting (EDPC) detectors have high potential in spectral imaging applications but exhibit degraded performance when the incident count rate approaches or exceeds the characteristic count rate of the detector. In order to reduce the requirements on the detector, we explore the strategy of modulating the X-ray flux field using a recently proposed dynamic, piecewise-linear attenuator. A previous paper studied this modulation for photon counting detectors but did not explore the impact on spectral applications. In this work, we modeled detection with a bipolar triangular pulse shape (Taguchi et al., 2011) and estimated the Cramer-Rao lower bound (CRLB) of the variance of material selective and equivalent monoenergetic images, assuming deterministic errors at high flux could be corrected. We compared different materials for the dynamic attenuator and found that rare earth elements, such as erbium, outperformed previously proposed materials such as iron in spectral imaging. The redistribution of flux reduces the variance or dose, consistent with previous studies on benefits with conventional detectors. Numerical simulations based on DICOM datasets were used to assess the impact of the dynamic attenuator for detectors with several different characteristic count rates. The dynamic attenuator reduced the peak incident count rate by a factor of 4 in the thorax and 44 in the pelvis, and a 10 Mcps/mm (2) EDPC detector with dynamic attenuator provided generally superior image quality to a 100 Mcps/mm (2) detector with reference bowtie filter for the same dose. The improvement is more pronounced in the material images.

  17. Spatiotemporal blue noise coded aperture design for multi-shot compressive spectral imaging. (United States)

    Correa, Claudia V; Arguello, Henry; Arce, Gonzalo R


    Multi-shot coded aperture snapshot spectral imaging (CASSI) systems capture the spectral information of a scene using a small set of coded focal plane array (FPA) compressive measurements. Compressed sensing (CS) reconstruction algorithms are then used to reconstruct the underlying spectral 3D data cube from an underdetermined system of linear equations. Multiple snapshots result in a less ill-posed inverse problem and improved reconstructions. The only varying components in CASSI are the coded apertures, whose structure is crucial inasmuch as they determine the minimum number of FPA measurements needed for correct image reconstruction and the corresponding attainable quality. Traditionally, the spatial structures of the coded aperture entries are selected at random, leading to suboptimal reconstruction solutions. This work presents an optimal structure design of a set of coded apertures by optimizing the concentration of measure of the multi-shot CASSI sensing matrix and its incoherence with respect to the sparse representation basis. First, the CASSI matrix system representation in terms of the ensemble of random projections is established. Then, the restricted isometry property (RIP) of the CASSI projections is determined as a function of the coded aperture entries. The optimal coded aperture structures are designed under the criterion of satisfying the RIP with high probability, coined spatiotemporal blue noise (BN) coded apertures. Furthermore, an algorithm that implements the BN ensembles is presented. Extensive simulations and a testbed implementation are developed to illustrate the improvements of the BN coded apertures over the traditionally used coded aperture structures, in terms of spectral image reconstruction PSNR and SSIM.

  18. The Spectral Response of the Landsat-8 Operational Land Imager

    Directory of Open Access Journals (Sweden)

    Julia A. Barsi


    Full Text Available Abstract: This paper discusses the pre-launch spectral characterization of the Operational Land Imager (OLI at the component, assembly and instrument levels and relates results of those measurements to artifacts observed in the on-orbit imagery. It concludes that the types of artifacts observed and their magnitudes are consistent with the results of the pre-launch characterizations. The OLI in-band response was characterized both at the integrated instrument level for a sampling of detectors and by an analytical stack-up of component measurements. The out-of-band response was characterized using a combination of Focal Plane Module (FPM level measurements and optical component level measurements due to better sensitivity. One of the challenges of a pushbroom design is to match the spectral responses for all detectors so that images can be flat-fielded regardless of the spectral nature of the targets in the imagery. Spectral variability can induce striping (detector-to-detector variation, banding (FPM-to-FPM variation and other artifacts in the final data products. Analyses of the measured spectral response showed that the maximum discontinuity between FPMs due to spectral filter differences is 0.35% for selected targets for all bands except for Cirrus, where there is almost no signal. The average discontinuity between FPMs is 0.12% for the same targets. These results were expected and are in accordance with the OLI requirements. Pre-launch testing identified low levels (within requirements of spectral crosstalk amongst the three HgCdTe (Cirrus, SWIR1 and SWIR2 bands of the OLI and on-orbit data confirms this crosstalk in the imagery. Further post-launch analyses and simulations revealed that the strongest crosstalk effect is from the SWIR1 band to the Cirrus band; about 0.2% of SWIR1 signal leaks into the Cirrus. Though the total crosstalk signal is only a few counts, it is evident in some scenes when the in-band cirrus signal is very weak. In

  19. Raman spectral imaging of single living cancer cells: a preliminary study. (United States)

    Draux, Florence; Jeannesson, Pierre; Beljebbar, Abdelilah; Tfayli, Ali; Fourre, Nicolas; Manfait, Michel; Sulé-Suso, Josep; Sockalingum, Ganesh D


    Raman microspectroscopy allows probing subcellular compartments and provides a unique spectral fingerprint indicative of endogenous molecular composition. Although several spectroscopic cell studies have been reported on fixed samples, only few attempts concern single growing cells. Here, we have tested different optical substrates that would best preserve cell integrity and allow direct measurement of Raman spectra at the single living cell level. Calu-1 lung cancer cells were used as a model and their morphology and growth were assessed on Raman substrates like quartz, calcium fluoride, and zinc selenide. Data show that quartz was the most appropriate taking into consideration both cell morphology and proliferation rate (47% on quartz vs. 55% of BrdU-positive cells on conventional plastic). Using quartz, 40 cells were analysed and Raman spectra were collected from nuclei and cytoplasms using a 785 nm laser excitation of 30 mW at the sample, in the spectral range of 580-1750 cm(-1), and an acquisition time of 2 x 10 sec/spectrum. Discriminant spectral information related to nucleus and cytoplasm were extracted by multivariate statistical methods and attributed to nucleic acids, lipids, and proteins. Finally, Raman spectral imaging was performed to show the distribution of these components within the cell.

  20. Spectral optical coherence tomography in video-rate and 3D imaging of contact lens wear. (United States)

    Kaluzny, Bartlomiej J; Fojt, Wojciech; Szkulmowska, Anna; Bajraszewski, Tomasz; Wojtkowski, Maciej; Kowalczyk, Andrzej


    To present the applicability of spectral optical coherence tomography (SOCT) for video-rate and three-dimensional imaging of a contact lens on the eye surface. The SOCT prototype instrument constructed at Nicolaus Copernicus University (Torun, Poland) is based on Fourier domain detection, which enables high sensitivity (96 dB) and increases the speed of imaging 60 times compared with conventional optical coherence tomography techniques. Consequently, video-rate imaging and three-dimensional reconstructions can be achieved, preserving the high quality of the image. The instrument operates under clinical conditions in the Ophthalmology Department (Collegium Medicum Nicolaus Copernicus University, Bydgoszcz, Poland). A total of three eyes fitted with different contact lenses were examined with the aid of the instrument. Before SOCT measurements, slit lamp examinations were performed. Data, which are representative for each imaging mode, are presented. The instrument provided high-resolution (4 microm axial x 10 microm transverse) tomograms with an acquisition time of 40 micros per A-scan. Video-rate imaging allowed the simultaneous quantitative evaluation of the movement of the contact lens and assessment of the fitting relationship between the lens and the ocular surface. Three-dimensional scanning protocols further improved lens visualization and fit evaluation. SOCT allows video-rate and three-dimensional cross-sectional imaging of the eye fitted with a contact lens. The analysis of both imaging modes suggests the future applicability of this technology to the contact lens field.

  1. Application of low concentration contrast medium in spectral CT imaging for CT portal venography. (United States)

    Zhao, Yongxia; Wu, Yanmin; Zuo, Ziwei; Suo, Hongna; Zhao, Sisi; Han, Jun; Chang, Xian; Cheng, Shujie


    To investigate the effect of low-concentration contrast medium on spectral computed tomography (CT) image quality for portal venography CT. 150 patients with suspected portal diseases were divided into three groups and had spectral CT examination using a GE Discovery CT 750 HD scanner. The patients in three groups were injected with different concentrations of iodine (350 mgI/mL, 315 mgI/mL and 280 mgI/mL) at an injection rate of 4.0-5.0 mL/s with 1.2 mL/kg (body weight) of contrast medium, respectively. During the portal vein imaging phase, 0.625 mm-slice-thickness monochromatic images and optimal monochromatic images were obtained. Optimal keV mono-energy was achieved using the optimal contrast-to-noise ratio (CNR) in the portal vein relative to the erector spinae muscle. Volume rendering and maximum intensity projection methods were applied to generate portal venography. The CT values and standard deviations were measured at the portal vein, the erector spinae muscle, and the abdomen fat, respectively. These values were used to calculate the signal-to-noise ratio (SNR); while CNR was calculated using CT values of the portal vein and erector spinae muscle. The overall imaging quality was evaluated on a five-point scale by two radiologists with at least five years' experience. Comparisons among the three groups were performed using One-Way ANOVA test. Monochromatic images at 50-53 keV demonstrated the best CNR for both the portal vein and erector spinae muscle. SNR and CNR of images with different contrast medium concentrations were similar (P > 0.05). The five-point scores were also similar (P > 0.05) for the three groups. The total iodine intake at 280 mgI/mL was 25.4% lower than that at 350 mgI/mL. Spectral CT with monochromatic images at 50-53 keV allows significant reduction in iodine load while improving portal vein signal intensity and maintaining image quality.

  2. Estimation of Melanin and Hemoglobin Using Spectral Reflectance Images Reconstructed from a Digital RGB Image by the Wiener Estimation Method

    Directory of Open Access Journals (Sweden)

    Yoshihisa Aizu


    Full Text Available A multi-spectral diffuse reflectance imaging method based on a single snap shot of Red-Green-Blue images acquired with the exposure time of 65 ms (15 fps was investigated for estimating melanin concentration, blood concentration, and oxygen saturation in human skin tissue. The technique utilizes the Wiener estimation method to deduce spectral reflectance images instantaneously from an RGB image. Using the resultant absorbance spectrum as a response variable and the extinction coefficients of melanin, oxygenated hemoglobin and deoxygenated hemoglobin as predictor variables, multiple regression analysis provides regression coefficients. Concentrations of melanin and total blood are then determined from the regression coefficients using conversion vectors that are numerically deduced in advance by the Monte Carlo simulations for light transport in skin. Oxygen saturation is obtained directly from the regression coefficients. Experiments with a tissue-like agar gel phantom validated the method. In vivo experiments on fingers during upper limb occlusion demonstrated the ability of the method to evaluate physiological reactions of human skin.

  3. Comparison of data and spectral driven methods for kaolinite-bearing area mapping in Masahim volcano, using Hyperion images

    Directory of Open Access Journals (Sweden)

    Bahram Bahrambeygi


    Full Text Available Hyperion hyperspectral data contains a very rich source of information from the Earth surface that collects 242 narrow contiguous spectral bands. Achieving this source of rich information is subject to the performance of suitable image processing methods on raw satellite data. Satellite image processing methods can be classified into two categories of statistical-based and spectral-based. In the statistical-based methods, processing principle is based on the distribution pattern of pixels’ DN values around mean, mode and median in DN value histogram of each band. However, in the spectral-based methods, the analysis is performed based on the spectral properties of the materials under question. In this study, we investigated both image processing methods and validated the results with field and laboratory data. Field and laboratory studies included the investigation of field samples, laboratory spectroradiometry, XRD analysis and thin section studies of the rock samples. SAM and PCA image processing methods performed on Hyperion images of the argillic zone in Masahim volcanic crater as spectral and statistical-based methods, respectively. The MTMF method also was surveyed as a composite method in addition to the use of reference spectrum using statistical principles. Confusion matrix prepared for the results of the three methods illustrated producer accuracy of 74.58% for SAM, 25.42% for PCA and 61% for MTMF results. Therefore, use of spectral-based methods on hyperspectral image processing is considered as a suitable way for ground surface remote sensing studies using hyperspectral Hyperion images.

  4. Multi-Spectral imaging of vegetation for detecting CO2 leaking from underground

    Energy Technology Data Exchange (ETDEWEB)

    Rouse, J.H.; Shaw, J.A.; Lawrence, R.L.; Lewicki, J.L.; Dobeck, L.M.; Repasky, K.S.; Spangler, L.H.


    Practical geologic CO{sub 2} sequestration will require long-term monitoring for detection of possible leakage back into the atmosphere. One potential monitoring method is multi-spectral imaging of vegetation reflectance to detect leakage through CO{sub 2}-induced plant stress. A multi-spectral imaging system was used to simultaneously record green, red, and near-infrared (NIR) images with a real-time reflectance calibration from a 3-m tall platform, viewing vegetation near shallow subsurface CO{sub 2} releases during summers 2007 and 2008 at the Zero Emissions Research and Technology field site in Bozeman, Montana. Regression analysis of the band reflectances and the Normalized Difference Vegetation Index with time shows significant correlation with distance from the CO{sub 2} well, indicating the viability of this method to monitor for CO{sub 2} leakage. The 2007 data show rapid plant vigor degradation at high CO{sub 2} levels next to the well and slight nourishment at lower, but above-background CO{sub 2} concentrations. Results from the second year also show that the stress response of vegetation is strongly linked to the CO{sub 2} sink-source relationship and vegetation density. The data also show short-term effects of rain and hail. The real-time calibrated imaging system successfully obtained data in an autonomous mode during all sky and daytime illumination conditions.

  5. Spectral Behavior of White Pigment Mixtures Using Reflectance, Ultraviolet-Fluorescence Spectroscopy, and Multispectral Imaging. (United States)

    Pronti, Lucilla; Felici, Anna Candida; Ménager, Matthieu; Vieillescazes, Cathy; Piacentini, Mario


    Reflectance spectroscopy, ultraviolet (UV)-fluorescence spectroscopy, and multispectral imaging have been widely employed for pigment identification on paintings. From ancient times to the present, lead white, zinc white, and titanium white have been the most important white pigments used for paintings and they are used as pigment markers for dating a work of art. The spectral behavior of these pigments is reported in several scientific papers and websites, but those of their mixtures are quite unknown. We present a combined nondestructive approach for identifying mixtures of lead white, zinc white, and titanium white as powder and dispersed in two different binder media (egg yolk and linseed oil) by using reflectance spectroscopy, spectrofluorimetry, multispectral reflectance and UV-fluorescence imaging. We propose a novel approach for mapping the presence of white pigments in paintings by false color images obtained from multispectral reflectance and UV-fluorescence images. We found that the presence of lead white mixed with either zinc white or titanium white is highly detectable. Zinc white mixed with lead white or titanium white can be identified due to its UV-fluorescence emission, whereas titanium white in association with lead white or zinc white is distinguishable by its reflectance spectral features. In most cases, the UV-fluorescence analyses also permit the recognition of the binder media in which the pigments are dispersed.

  6. Spectral and temporal multiplexing for multispectral fluorescence and reflectance imaging using two color sensors. (United States)

    Dimitriadis, Nikolas; Grychtol, Bartłomiej; Theuring, Martin; Behr, Tobias; Sippel, Christian; Deliolanis, Nikolaos C


    Fluorescence imaging can reveal functional, anatomical or pathological features of high interest in medical interventions. We present a novel method to record and display in video rate multispectral color and fluorescence images over the visible and near infrared range. The fast acquisition in multiple channels is achieved through a combination of spectral and temporal multiplexing in a system with two standard color sensors. Accurate color reproduction and high fluorescence unmixing performance are experimentally demonstrated with a prototype system in a challenging imaging scenario. Through spectral simulation and optimization we show that the system is sensitive to all dyes emitting in the visible and near infrared region without changing filters and that the SNR of multiple unmixed components can be kept high if parameters are chosen well. We propose a sensitive per-pixel metric of unmixing quality in a single image based on noise propagation and present a method to visualize the high-dimensional data in a 2D graph, where up to three fluorescent components can be distinguished and segmented.

  7. Application of dual-energy spectral CT imaging in differential diagnosis of bladder cancer and benign prostate hyperplasia. (United States)

    Chen, Anliang; Liu, Ailian; Liu, Jinghong; Tian, Shifeng; Wang, Heqing; Liu, Yijun


    The aim of this study was to explore the clinical value of dual-energy spectral CT imaging in the differential diagnosis between bladder cancer and benign prostate hyperplasia (BPH).We retrospectively analyzed images of 118 patients who received pelvic dual-energy spectral CT imaging. These patients were later confirmed to have bladder cancer in 61 patients and BPH in 57 patients. CT values of the 2 lesion types from 40 to 140 keV were measured from the monochromatic spectral CT image to generate spectral HU curves. The slope of the spectral curve and the lesion effective atomic number were calculated. The measured parameters were analyzed with independent-sample Mann-Whitney U test.There was a statistically significant difference in CT value between the 2 groups from 40 to 90 keV, with the biggest difference at 40 keV (median and interquartile range: 83.3 HU and 22.9 HU vs 60.6 HU and 16.7 HU, Z = 5.932, P spectral HU curve for bladder cancer was markedly higher than that of BPH (median and interquartile range: 0.48 and 0.23 vs 0.26 and 0.22, Z = 5.162, P spectral CT imaging provides high sensitivity and specificity for differentiating bladder cancer from benign prostate hyperplasia.

  8. CH1-ORB MOON M3 2 L0 RAW NEAR-IR SPECTRAL IMAGES V1.0 (United States)

    National Aeronautics and Space Administration — This data set contains raw near-IR spectral image cubes acquired from November 2008 through August 2009 by the Moon Mineralogy Mapper (M3) instrument during the...

  9. Quantitative iodine-based material decomposition images with spectral CT imaging for differentiating prostatic carcinoma from benign prostatic hyperplasia. (United States)

    Zhang, Xiao Fei; Lu, Qing; Wu, Lian Ming; Zou, Ai Hua; Hua, Xiao Lan; Xu, Jian Rong


    To investigate the value of iodine-based material decomposition images produced via spectral computed tomography (CT) in differentiating prostate cancer (PCa) from benign prostate hyperplasia (BPH). Fifty-six male patients underwent CT examination with spectral imaging during arterial phase (AP), venous phase (VP), and parenchymal phase (PP) of enhancement. Iodine concentrations of lesions were measured and normalized to that of the obturator internus muscle. Lesion CT values at 75 keV (corresponding to the energy of polychromatic images at 120 kVp) were measured and also normalized; their differences between AP and VP, VP and PP, and PP and AP were also obtained. The two-sample t-test was performed for comparisons. A receiver operating characteristic curve was generated to establish the threshold for normalized iodine concentration (NIC). Fifty-two peripheral lesions were found, which were confirmed by biopsy as 28 cases of PCa and 24 BPHs. The NICs of prostate cancers significantly differed from those of the BPHs: 2.38 ± 1.72 compared with 1.21 ± 0.72 in AP, respectively, and 2.67 ± 0.61 compared with 2.27 ± 0.77 in VP. Receiver operating characteristic analysis indicated that an NIC of 1.24 in the AP provided a sensitivity of 88% and a specificity of 71% for differentiating PCa from BPH. Spectral CT imaging enabled quantitative depiction of contrast medium uptake in prostatic lesions and improved sensitivity and specificity for differentiating PCa from BPH. Copyright © 2013 AUR. Published by Elsevier Inc. All rights reserved.

  10. Multi-spectral light interaction modeling and imaging of skin lesions (United States)

    Patwardhan, Sachin Vidyanand

    Nevoscope as a diagnostic tool for melanoma was evaluated using a white light source with promising results. Information about the lesion depth and its structure will further improve the sensitivity and specificity of melanoma diagnosis. Wavelength-dependent variable penetration power of monochromatic light in the trans-illumination imaging using the Nevoscope can be used to obtain this information. Optimal selection of wavelengths for multi-spectral imaging requires light-tissue interaction modeling. For this, three-dimensional wavelength dependent voxel-based models of skin lesions with different depths are proposed. A Monte Carlo simulation algorithm (MCSVL) is developed in MATLAB and the tissue models are simulated using the Nevoscope optical geometry. 350--700nm optical wavelengths with an interval of 5nm are used in the study. A correlation analysis between the lesion depth and the diffuse reflectance is then used to obtain wavelengths that will produce diffuse reflectance suitable for imaging and give information related to the nevus depth and structure. Using the selected wavelengths, multi-spectral trans-illumination images of the skin lesions are collected and analyzed. An adaptive wavelet transform based tree-structure classification method (ADWAT) is proposed to classify epi-illuminance images of the skin lesions obtained using a white light source into melanoma and dysplastic nevus images classes. In this method, tree-structure models of melanoma and dysplastic nevus are developed and semantically compared with the tree-structure of the unknown image for classification. Development of the tree-structure is dependent on threshold selections obtained from a statistical analysis of the feature set. This makes the classification method adaptive. The true positive value obtained for this classifier is 90% with a false positive of 10%. The Extended ADWAT method and Fuzzy Membership Functions method using combined features from the epi-illuminance and multi-spectral

  11. Remote spectral identification of surface aggregates by thermal imaging techniques - Progress report (United States)

    Scholen, Douglas E.; Clerke, William H.; Burns, Gregory S.


    The NASA Thermal Infrared Multispectral Scanner (TIMS) has been successfully used for the remote identification of a variety of soil and aggregate deposits in vegetated areas of two states. Over three million cubic meters of gravel deposits were identified from the imagery during a two year period. Verification was accomplished by ground reconnaissance using drilling machinery and by ground instrumentation. The method has been used to differentiate between fine and coarse grained soils, and gravel deposits. The deposits were found to have been naturally sorted according to grain size by depositional processes, providing each deposit with distinct spectral qualities. It was found that the masking effects of relatively dense vegetation were largely overcome by using imagery acquired at higher altitudes above terrain than 9000 meters, due to loss of resolution of the finer detail. The mechanics of image resolution are discussed, a method of data analysis used is described, and sample spectral signatures are illustrated.

  12. Effects of spatial resolution and spectral purity on transvenous coronary angiography images

    Energy Technology Data Exchange (ETDEWEB)

    Chapman, D.; Thomlinson, W.; Gumer, N.F. [and others


    Measurements have been made on the National Synchrotron Light Source (NSLS) Coronary Angiography X17B2 beamline under ideal and real imaging conditions to investigate the optimal imaging conditions for spatial resolution and spectral purity. The spatial resolution tests were performed using two multielement Si(Li) detectors (600 element, 0.5mm, pixel-pixel spacing; 1200 element, 0.25mm pixel-pixel spacing. Images were taken of phantoms containing iodine contrast agent over a wide range of incident beam absorption conditions. Patient images were also obtained using the same viewing projection with both detectors. Harmonics present in the imaging beam can be reduced by operating the superconducting wiggler source at reduced field strength. At regions of high absorption in the patient, the harmonics present can contribute to the detected signal. Iodine phantom images were obtained at a wiggler field strength of 3 Tesla (E{sub c}=13.3keV) and 4 Tesla (E{sub c}= I 7.8keV) for comparison. As before, patient images were obtained using the same projection at both wiggler fields. Results of the detector resolution and wiggler eld measurements will be presented for the phantoms as well as the patient scans.

  13. Preliminary application of high-definition CT Gemstone Spectral Imaging in hand and foot tendons. (United States)

    Deng, Kai; Zhang, Cheng-Qi; Li, Wei; Wang, Jun-Jun; Wang, Xin-Yi; Pang, Tao; Wang, Guang-Li; Liu, Cheng


    To assess the feasibility of visualizing hand and foot tendon anatomy and disorders by Gemstone Spectral Imaging (GSI) high-definition CT (HDCT). Thirty-five patients who suffered from hand or foot pain were scanned with GSI mode HDCT and MRI. Spectrum analysis was used to select the monochromatic images that provide the optimal contrast-to-noise ratio (CNR) for tendons. The image quality at the best selected monochromatic level and the conventional polychromatic images were compared. Tendon anatomy and disease were also analyzed at GSI and MRI. The monochromatic images at about 65 keV (mean 65.09 ± 2.98) provided the optimal CNR for hand and foot tendons. The image quality at the optimal selected monochromatic level was superior to conventional polychromatic images (p = 0.005, p differences between GSI and MRI with regard to tendon thickening (χ(2) = 0, p > 0.05), compression (χ(2) = 0.5, p > 0.05), absence (χ(2) = 0, p > 0.05) and rupture (χ(2) = 0, p > 0.05). GSI was significantly less sensitive than MRI in displaying tendon adhesion (χ(2) = 4.17, p individual patient disease condition.

  14. Carotid Plaque Evaluation Using Gemstone Spectral Imaging: Comparison with Magnetic Resonance Angiography. (United States)

    Shinohara, Yuki; Sakamoto, Makoto; Kuya, Keita; Kishimoto, Junichi; Yamashita, Eijiro; Fujii, Shinya; Kurosaki, Masamichi; Ogawa, Toshihide


    The present study compared the applicability of computed tomography carotid plaque imaging using effective Z maps with gemstone spectral imaging (GSI) to that of magnetic resonance plaque imaging using 3-dimensional time-of-flight magnetic resonance angiography. Stenosis was assessed in 18 carotid arteries of 14 patients, and the effective Z values of noncalcified carotid plaques were compared with the signal intensities of magnetic resonance angiography. It was found that the effective Z value of noncalcified carotid plaques was significantly lower for a group with high signal intensity than for a group with low signal intensity on magnetic resonance angiography (P magnetic resonance angiography was 7.83. The effective Z value generated by GSI is a useful parameter to detect vulnerable carotid plaque materials. Copyright © 2017 National Stroke Association. Published by Elsevier Inc. All rights reserved.

  15. Image-Based Airborne Sensors: A Combined Approach for Spectral Signatures Classification through Deterministic Simulated Annealing (United States)

    Guijarro, María; Pajares, Gonzalo; Herrera, P. Javier


    The increasing technology of high-resolution image airborne sensors, including those on board Unmanned Aerial Vehicles, demands automatic solutions for processing, either on-line or off-line, the huge amountds of image data sensed during the flights. The classification of natural spectral signatures in images is one potential application. The actual tendency in classification is oriented towards the combination of simple classifiers. In this paper we propose a combined strategy based on the Deterministic Simulated Annealing (DSA) framework. The simple classifiers used are the well tested supervised parametric Bayesian estimator and the Fuzzy Clustering. The DSA is an optimization approach, which minimizes an energy function. The main contribution of DSA is its ability to avoid local minima during the optimization process thanks to the annealing scheme. It outperforms simple classifiers used for the combination and some combined strategies, including a scheme based on the fuzzy cognitive maps and an optimization approach based on the Hopfield neural network paradigm. PMID:22399989

  16. Imaging Grating Spectrometer (I-GRASP) for Solar Soft X-Ray Spectral Measurements in Critically Under-Observed 0.5 - 7 nm Spectral Range (United States)

    Didkovsky, L. V.; Wieman, S. R.; Chao, W.; Woods, T. N.; Jones, A. R.; Thiemann, E.; Mason, J. P.


    We discuss science and technology advantages of the Imaging Grating Spectrometer (I-GRASP) based on a novel transmission diffracting grating (TDG) made possible by technology for fabricating Fresnel zone plates (ZPs) developed at the Lawrence Berkeley National Laboratory (LBNL). Older version TDGs with 200 nm period available in the 1990s became a proven technology for providing 21 years of regular measurements of solar EUV irradiance. I-GRASP incorporates an advanced TDG with a grating period of 50 nm providing four times better diffraction dispersion than the 200 nm period gratings used in the SOHO/CELIAS/SEM, the SDO/EVE/ESP flight spectrophotometers, and the EVE/SAM sounding rocket channel. Such new technology for the TDG combined with a back-illuminated 2000 x 1504 CMOS image sensor with 7 micron pixels, will provide spatially-and-spectrally resolved images and spectra from individual Active Regions (ARs) and solar flares with high (0.15 nm) spectral resolution. Such measurements are not available in the spectral band from about 2 to 6 nm from existing or planned spectrographs and will be significantly important to study ARs and solar flare temperatures and dynamics, to improve existing spectral models, e.g. CHIANTI, and to better understand processes in the Earth's atmosphere processes. To test this novel technology, we have proposed to the NASA LCAS program an I-GRASP version for a sounding rocket flight to increase the TDG TRL to a level appropriate for future CubeSat projects.

  17. Content-based image retrieval of digitized histopathology in boosted spectrally embedded spaces. (United States)

    Sridhar, Akshay; Doyle, Scott; Madabhushi, Anant


    Content-based image retrieval (CBIR) systems allow for retrieval of images from within a database that are similar in visual content to a query image. This is useful for digital pathology, where text-based descriptors alone might be inadequate to accurately describe image content. By representing images via a set of quantitative image descriptors, the similarity between a query image with respect to archived, annotated images in a database can be computed and the most similar images retrieved. Recently, non-linear dimensionality reduction methods have become popular for embedding high-dimensional data into a reduced-dimensional space while preserving local object adjacencies, thereby allowing for object similarity to be determined more accurately in the reduced-dimensional space. However, most dimensionality reduction methods implicitly assume, in computing the reduced-dimensional representation, that all features are equally important. In this paper we present boosted spectral embedding(BoSE), which utilizes a boosted distance metric to selectively weight individual features (based on training data) to subsequently map the data into a reduced-dimensional space. BoSE is evaluated against spectral embedding (SE) (which employs equal feature weighting) in the context of CBIR of digitized prostate and breast cancer histopathology images. The following datasets, which were comprised of a total of 154 hematoxylin and eosin stained histopathology images, were used: (1) Prostate cancer histopathology (benign vs. malignant), (2) estrogen receptor (ER) + breast cancer histopathology (low vs. high grade), and (3) HER2+ breast cancer histopathology (low vs. high levels of lymphocytic infiltration). We plotted and calculated the area under precision-recall curves (AUPRC) and calculated classification accuracy using the Random Forest classifier. BoSE outperformed SE both in terms of CBIR-based (area under the precision-recall curve) and classifier-based (classification accuracy

  18. Robust spectral analysis of videocapsule images acquired from celiac disease patients

    Directory of Open Access Journals (Sweden)

    Bhagat Govind


    Full Text Available Abstract Background Dominant frequency (DF analysis of videocapsule endoscopy images is a new method to detect small intestinal periodicities that may result from mechanical rhythms such as peristalsis. Longer periodicity is related to greater image texture at areas of villous atrophy in celiac disease. However, extraneous features and spatiotemporal phase shift may mask DF rhythms. Method The robustness of Fourier and ensemble averaging spectral analysis to compute DF was tested. Videocapsule images from the distal duodenum of 11 celiac patients (frame rate 2/s and pixel resolution 576 × 576 were analyzed. For patients 1, 2, ... 11, respectively, a total of 10, 11, ..., 20 sequential images were extracted from a randomly selected time epoch. Each image sequence was artificially repeated to 200 frames, simulating periodicities of 0.2, 0.18, ..., 0.1Hz, respectively. Random white noise at four different levels, spatiotemporal phase shift, and frames with air bubbles were added. Power spectra were constructed pixel-wise over 200 frames, and an average spectrum was computed from the 576 × 576 individual spectra. The largest spectral peak in the average spectrum was the estimated DF. Error was defined as the absolute difference between actual DF and estimated DF. Results For Fourier analysis, the mean absolute error between estimated and actual DF was 0.032 ± 0.052Hz. Error increased with greater degree of random noise imposed. In contrast, all ensemble average estimates precisely predicted the simulated DF. Conclusions The ensemble average DF estimate of videocapsule images with simulated periodicity is robust to noise and spatiotemporal phase shift as compared with Fourier analysis. Accurate estimation of DF eliminates the need to impose complex masking, extraction, and/or corrective preprocessing measures.

  19. Spectral characterization of tissues in high spectral and spatial resolution MR images: Implications for a classification-based synthetic CT algorithm. (United States)

    Wood, Abbie M; Shea, Steven M; Medved, Milica; Karczmar, Gregory S; Surucu, Murat; Gros, Sebastien; Small, William; Roeske, John


    To characterize the spectral parameters of tissues with high spectral and spatial resolution magnetic resonance images to be used as a foundation for a classification-based synthetic CT algorithm. A phantom was constructed consisting of a section of fresh beef leg with bone embedded in 1% agarose gel. The high spectral and spatial (HiSS) resolution MR imaging sequence used had 1.0 mm in-plane resolution and 11.1 Hz spectral resolution. This sequence was used to image the phantom and one patient. Post-processing was performed off-line with IDL and included Fourier transformation of the time-domain data, labeling of fat and water peaks, and fitting the magnitude spectra with Lorentzian functions. Images of the peak height and peak integral of both the water and fat resonances were generated and analyzed. Several regions-of-interest (ROIs) were identified in phantom: bone marrow, cortical bone, adipose tissue, muscle, agar gel, and air; in the patient, no agar gel was present but an ROI of saline in the bladder was analyzed. All spectra were normalized by the noise within each voxel; thus, all parameters are reported in terms of signal-to-noise (SNR). The distributions of tissue spectral parameters were analyzed and scatterplots generated. Water peak height in cortical bone was compared to air using a nonparametric t-test. Composition of the various ROIs in terms of water, fat, or fat and water was also reported. In phantom, the scatterplot of peak height (water versus fat) showed good separation of bone marrow and adipose tissue. Water versus fat integral scatterplot showed better separation of muscle and cortical bone than the peak height scatterplot. In the patient data, the distributions of water and fat peak heights were similar to that in phantom, with more overlap of bone marrow and cortical bone than observed in phantom. The relationship between bone marrow and cortical bone for peak integral was better separated than those of peak heights in the patient data

  20. Accurate Annotation of Remote Sensing Images via Active Spectral Clustering with Little Expert Knowledge

    Directory of Open Access Journals (Sweden)

    Gui-Song Xia


    Full Text Available It is a challenging problem to efficiently interpret the large volumes of remotely sensed image data being collected in the current age of remote sensing “big data”. Although human visual interpretation can yield accurate annotation of remote sensing images, it demands considerable expert knowledge and is always time-consuming, which strongly hinders its efficiency. Alternatively, intelligent approaches (e.g., supervised classification and unsupervised clustering can speed up the annotation process through the application of advanced image analysis and data mining technologies. However, high-quality expert-annotated samples are still a prerequisite for intelligent approaches to achieve accurate results. Thus, how to efficiently annotate remote sensing images with little expert knowledge is an important and inevitable problem. To address this issue, this paper introduces a novel active clustering method for the annotation of high-resolution remote sensing images. More precisely, given a set of remote sensing images, we first build a graph based on these images and then gradually optimize the structure of the graph using a cut-collect process, which relies on a graph-based spectral clustering algorithm and pairwise constraints that are incrementally added via active learning. The pairwise constraints are simply similarity/dissimilarity relationships between the most uncertain pairwise nodes on the graph, which can be easily determined by non-expert human oracles. Furthermore, we also propose a strategy to adaptively update the number of classes in the clustering algorithm. In contrast with existing methods, our approach can achieve high accuracy in the task of remote sensing image annotation with relatively little expert knowledge, thereby greatly lightening the workload burden and reducing the requirements regarding expert knowledge. Experiments on several datasets of remote sensing images show that our algorithm achieves state

  1. HSI-Find: A Visualization and Search Service for Terascale Spectral Image Catalogs (United States)

    Thompson, D. R.; Smith, A. T.; Castano, R.; Palmer, E. E.; Xing, Z.


    Imaging spectrometers are remote sensing instruments commonly deployed on aircraft and spacecraft. They provide surface reflectance in hundreds of wavelength channels, creating data cubes known as hyperspecrtral images. They provide rich compositional information making them powerful tools for planetary and terrestrial science. These data products can be challenging to interpret because they contain datapoints numbering in the thousands (Dawn VIR) or millions (AVIRIS-C). Cross-image studies or exploratory searches involving more than one scene are rare; data volumes are often tens of GB per image and typical consumer-grade computers cannot store more than a handful of images in RAM. Visualizing the information in a single scene is challenging since the human eye can only distinguish three color channels out of the hundreds available. To date, analysis has been performed mostly on single images using purpose-built software tools that require extensive training and commercial licenses. The HSIFind software suite provides a scalable distributed solution to the problem of visualizing and searching large catalogs of spectral image data. It consists of a RESTful web service that communicates to a javascript-based browser client. The software provides basic visualization through an intuitive visual interface, allowing users with minimal training to explore the images or view selected spectra. Users can accumulate a library of spectra from one or more images and use these to search for similar materials. The result appears as an intensity map showing the extent of a spectral feature in a scene. Continuum removal can isolate diagnostic absorption features. The server-side mapping algorithm uses an efficient matched filter algorithm that can process a megapixel image cube in just a few seconds. This enables real-time interaction, leading to a new way of interacting with the data: the user can launch a search with a single mouse click and see the resulting map in seconds

  2. Interference filter spectral imaging of twilight O+(2P-2D emission

    Directory of Open Access Journals (Sweden)

    R. H. Wiens

    Full Text Available A spectral imager specifically designed to measure the O+(2P-2D emission in the thermosphere during twilight has been constructed and tested in Toronto (43.8°N, 79.3°W, and found to show promise for long-term and campaign-mode operations. A modification of the mesopause oxygen rotational temperature imager (MORTI, it consists basically of a narrow-band interference filter (0.14 nm bandwidth to separate wavelengths as a function of off-axis angle, a lens to focus the spectrum into a series of concentric rings, and a focal plane array (CCD to record the spectral images in digital form. The instrument was built with two fields of view, one for the zenith and one for 20° above the horizon, movable to track the azimuth of the Sun, in order to provide appropriate data for inversion. Data gathered during June 1991 provided measurements of the column-integrated emission rate with a precision of about 3%. An atomic oxygen profile was deduced that showed good agreement with that predicted by the MSIS-90 model atmosphere. Geomagnetically induced variations of the O+ lines, calcium spectra resulting from meteor showers, and OH nightglow were also observed.

  3. Interference filter spectral imaging of twilight O+(2P-2D emission

    Directory of Open Access Journals (Sweden)

    Y. Ma


    Full Text Available A spectral imager specifically designed to measure the O+(2P-2D emission in the thermosphere during twilight has been constructed and tested in Toronto (43.8°N, 79.3°W, and found to show promise for long-term and campaign-mode operations. A modification of the mesopause oxygen rotational temperature imager (MORTI, it consists basically of a narrow-band interference filter (0.14 nm bandwidth to separate wavelengths as a function of off-axis angle, a lens to focus the spectrum into a series of concentric rings, and a focal plane array (CCD to record the spectral images in digital form. The instrument was built with two fields of view, one for the zenith and one for 20° above the horizon, movable to track the azimuth of the Sun, in order to provide appropriate data for inversion. Data gathered during June 1991 provided measurements of the column-integrated emission rate with a precision of about 3%. An atomic oxygen profile was deduced that showed good agreement with that predicted by the MSIS-90 model atmosphere. Geomagnetically induced variations of the O+ lines, calcium spectra resulting from meteor showers, and OH nightglow were also observed.

  4. A recursive spectral selection scheme for unsupervised segmentation of multispectral Pap smear image sets (United States)

    Zhao, Tong; Wachman, Elliot S.; Geyer, Stanley J.; Farkas, Daniel L.


    Efficient computer-aided cervical cancer detection can improve both the accuracy and the productivity of cytotechnologists and pathologists. Nuclear segmentation is essential to automated screening, and is still a challenge. We propose and demonstrate a novel approach to improving segmentation performance by multispectral imaging followed by unsupervised nuclear segmentation relying on selecting a useful subset of spectral or derived image features. In the absence of prior knowledge, feature selection can be negatively affected by the bias, present in most unsupervised segmentation, to erroneously segment out small objects, yielding ill-balanced class samples. To address this issue, we first introduce a new measurement, Criterion Vector (CV), measuring the distances between the segmentation result and the original data. This efficiently reduces the bias generated by feature selection. Second, we apply a novel recursive feature selection scheme, to generate a new feature subset based on the corresponding CV, ensuring that the correct part of the initial segmentation results is used to obtain better feature subsets. We studied the speed and accuracy of our two-step algorithm in analyzing a number of multispectral Pap smear image sets. The results show high accuracy of segmentation, as well as great reduction of spectral redundancy. The nuclear segmentation accuracy can reach over 90%, by selecting as few as 4 distinct spectra out of 30.

  5. GPU-Based High-performance Imaging for Mingantu Spectral RadioHeliograph (United States)

    Mei, Ying; Wang, Feng; Wang, Wei; Chen, Linjie; Liu, Yingbo; Deng, Hui; Dai, Wei; Liu, Cuiyin; Yan, Yihua


    As a dedicated solar radio interferometer, the MingantU SpEctral RadioHeliograph (MUSER) generates massive observational data in the frequency range of 400 MHz-15 GHz. High-performance imaging forms a significantly important aspect of MUSER’s massive data processing requirements. In this study, we implement a practical high-performance imaging pipeline for MUSER data processing. At first, the specifications of the MUSER are introduced and its imaging requirements are analyzed. Referring to the most commonly used radio astronomy software such as CASA and MIRIAD, we then implement a high-performance imaging pipeline based on the Graphics Processing Unit technology with respect to the current operational status of the MUSER. A series of critical algorithms and their pseudo codes, i.e., detection of the solar disk and sky brightness, automatic centering of the solar disk and estimation of the number of iterations for clean algorithms, are proposed in detail. The preliminary experimental results indicate that the proposed imaging approach significantly increases the processing performance of MUSER and generates images with high-quality, which can meet the requirements of the MUSER data processing. Supported by the National Key Research and Development Program of China (2016YFE0100300), the Joint Research Fund in Astronomy (No. U1531132, U1631129, U1231205) under cooperative agreement between the National Natural Science Foundation of China (NSFC) and the Chinese Academy of Sciences (CAS), the National Natural Science Foundation of China (Nos. 11403009 and 11463003).

  6. Multi-spectral quantitative phase imaging based on filtration of light via ultrasonic wave (United States)

    Machikhin, A. S.; Polschikova, O. V.; Ramazanova, A. G.; Pozhar, V. E.


    A new digital holographic microscopy scheme for multi-spectral quantitative phase imaging is proposed and implemented. It is based on acousto-optic filtration of wide-band low-coherence light at the entrance of a Mach-Zehnder interferometer, recording and digital processing of interferograms. The key requirements for the acousto-optic filter are discussed. The effectiveness of the technique is demonstrated by calculating the phase maps of human red blood cells at multiple wavelengths in the range 770-810 nm. The scheme can be used for the measurement of dispersion of thin films and biological samples.

  7. Debris Disk Dust Characterization through Spectral Types: Deep Visible-Light Imaging of Nine Systems (United States)

    Choquet, Elodie


    We propose STIS coronagraphy of 9 debris disks recently seen in the near-infrared from our re-analysis of archival NICMOS data. STIS coronagraphy will provide complementary visible-light images that will let us characterize the disk colors needed to place constraints on dust grain sizes, albedos, and anisotropy of scattering of these disks. With 3 times finer angular resolution and much better sensitivity, our STIS images will dramatically surpass the NICMOS discovery images, and will more clearly reveal disk local structures, cleared inner regions, and test for large-scale asymmetries in the dust distributions possibly triggered by associated planets in these systems. The exquisite sensitivity to visible-light scattering by submicron particles uniquely offered by STIS coronagraphy will let us detect and spatially characterize the diffuse halo of dust blown out of the systems by the host star radiative pressure. Our sample includes disks around 3 low-mass stars, 3 solar-type stars, and 3 massive A stars; together with our STIS+NICMOS imaging of 6 additional disks around F and G stars, our sample covers the full range of spectral types and will let us perform a comparative study of dust distribution properties as a function of stellar mass and luminosity. Our sample makes up more than 1/3 of all debris disks imaged in scattered light to date, and will offer the first homogeneous characterization of the visible-light to near-IR properties of debris disk systems over a large range of spectral types. Our program will let us analyze how the dynamical balance is affected by initial conditions and star properties, and how it may be perturbed by gas drag or planet perturbations.

  8. Multimodal and multiplex spectral imaging of rat cornea ex vivo using a white-light laser source. (United States)

    Segawa, Hiroki; Kaji, Yuichi; Leproux, Philippe; Couderc, Vincent; Ozawa, Takeaki; Oshika, Tetsuro; Kano, Hideaki


    We applied our multimodal nonlinear spectral imaging microscope to the measurement of rat cornea. We successfully obtained multiple nonlinear signals of coherent anti-Stokes Raman scattering (CARS), third-order sum frequency generation (TSFG), and second harmonic generation (SHG). Depending on the nonlinear optical processes, the cornea tissue was visualized with different image contrast mechanism simultaneously. Due to white-light laser excitation, multiplex CARS and TSFG spectra were obtained. Combined multimodal and spectral analysis clearly elucidated the layered structure of rat cornea with molecular structural information. This study indicates that our multimodal nonlinear spectral microscope is a promising bioimaging method for tissue study. Multimodal nonlinear spectral images of rat cornea at corneal epithelium and corneal stroma in the in-plane (XY) direction. With use of the combinational analysis of different nonlinear optical processes, detailed molecular structural information is available without staining or labelling. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  9. Evaluating visibility of age spot and freckle based on simulated spectral reflectance distribution and facial color image (United States)

    Hirose, Misa; Toyota, Saori; Tsumura, Norimichi


    In this research, we evaluate the visibility of age spot and freckle with changing the blood volume based on simulated spectral reflectance distribution and the actual facial color images, and compare these results. First, we generate three types of spatial distribution of age spot and freckle in patch-like images based on the simulated spectral reflectance. The spectral reflectance is simulated using Monte Carlo simulation of light transport in multi-layered tissue. Next, we reconstruct the facial color image with changing the blood volume. We acquire the concentration distribution of melanin, hemoglobin and shading components by applying the independent component analysis on a facial color image. We reproduce images using the obtained melanin and shading concentration and the changed hemoglobin concentration. Finally, we evaluate the visibility of pigmentations using simulated spectral reflectance distribution and facial color images. In the result of simulated spectral reflectance distribution, we found that the visibility became lower as the blood volume increases. However, we can see that a specific blood volume reduces the visibility of the actual pigmentations from the result of the facial color images.

  10. Automatic spectral imaging protocol selection and iterative reconstruction in abdominal CT with reduced contrast agent dose: initial experience

    Energy Technology Data Exchange (ETDEWEB)

    Lv, Peijie; Liu, Jie; Chai, Yaru; Yan, Xiaopeng; Gao, Jianbo; Dong, Junqiang [The First Affiliated Hospital of Zhengzhou University, Department of Radiology, Zhengzhou, Henan Province (China)


    To evaluate the feasibility, image quality, and radiation dose of automatic spectral imaging protocol selection (ASIS) and adaptive statistical iterative reconstruction (ASIR) with reduced contrast agent dose in abdominal multiphase CT. One hundred and sixty patients were randomly divided into two scan protocols (n = 80) each; protocol A, 120 kVp/450 mgI/kg, filtered back projection algorithm (FBP); protocol B, spectral CT imaging with ASIS and 40 to 70 keV monochromatic images generated per 300 mgI/kg, ASIR algorithm. Quantitative parameters (image noise and contrast-to-noise ratios [CNRs]) and qualitative visual parameters (image noise, small structures, organ enhancement, and overall image quality) were compared. Monochromatic images at 50 keV and 60 keV provided similar or lower image noise, but higher contrast and overall image quality as compared with 120-kVp images. Despite the higher image noise, 40-keV images showed similar overall image quality compared to 120-kVp images. Radiation dose did not differ between the two protocols, while contrast agent dose in protocol B was reduced by 33 %. Application of ASIR and ASIS to monochromatic imaging from 40 to 60 keV allowed contrast agent dose reduction with adequate image quality and without increasing radiation dose compared to 120 kVp with FBP. (orig.)

  11. Improved in Vivo Whole-Animal Detection Limits of Green Fluorescent Protein–Expressing Tumor Lines by Spectral Fluorescence Imaging

    Directory of Open Access Journals (Sweden)

    Jenny M. Tam


    Full Text Available Green fluorescent protein (GFP has been used for cell tracking and imaging gene expression in superficial or surgically exposed structures. However, in vivo murine imaging is often limited by several factors, including scatter and attenuation with depth and overlapping autofluorescence. The autofluorescence signals have spectral profiles that are markedly different from the GFP emission spectral profile. The use of spectral imaging allows separation and quantitation of these contributions to the total fluorescence signal seen in vivo by weighting known pure component profiles. Separation of relative GFP and autofluorescence signals is not readily possible using epifluorescent continuous-wave single excitation and emission bandpass imaging (EFI. To evaluate detection thresholds using these two methods, nude mice were subcutaneously injected with a series of GFP-expressing cells. For EFI, optimized excitation and emission bandpass filters were used. Owing to the ability to separate autofluorescence contributions from the emission signal using spectral imaging compared with the mixed contributions of GFP and autofluorescence in the emission signal recorded by the EFI system, we achieved a 300-fold improvement in the cellular detection limit. The detection limit was 3 × 103 cells for spectral imaging versus 1 × 106 cells for EFI. Despite contributions to image stacks from autofluorescence, a 100-fold dynamic range of cell number in the same image was readily visualized. Finally, spectral imaging was able to separate signal interference of red fluorescent protein from GFP images and vice versa. These findings demonstrate the utility of the approach in detecting low levels of multiple fluorescent markers for whole-animal in vivo applications.

  12. HyperCLIPS: A HyperCard interface to CLIPS (United States)

    Pickering, Brad; Hill, Randall W., Jr.


    HyperCLIPS combines the intuitive, interactive user interface of the Apple Macintosh(TM) with the powerful symbolic computation of an expert system interpreter. HyperCard(TM) is an excellent environment for quickly developing the front end of an application with buttons, dialogs, and pictures, while the CLIPS interpreter provides a powerful inference engine for complex problem solving and analysis. By integrating HyperCard and CLIPS the advantages and uses of both packages are made available for a wide range of uses: rapid prototyping of knowledge-based expert systems, interactive simulations of physical systems, and intelligent control of hypertext processes, to name a few. Interfacing HyperCard and CLIPS is natural. HyperCard was designed to be extended through the use of external commands (XCMDs), and CLIPS was designed to be embedded through the use of the I/O router facilities and callable interface routines. With the exception of some technical difficulties which will be discussed later, HyperCLIPS implements this interface in a straight forward manner, using the facilities provided. An XCMD called 'ClipsX' was added to HyperCard to give access to the CLIPS routines: clear, load, reset, and run. And an I/O router was added to CLIPS to handle the communication of data between CLIPS and HyperCard.

  13. Hyper-Spectral Communications, Networking and ATM as Foundation for Safe and Efficient Future Flight: Transcending Aviation Operational Limitations with Diverse and Secure Multi-Band, Multi-Mode, and mmWave Wireless Links: Project Overview, Aviation Communications and New Signaling (United States)

    Matolak, David W.


    NASA's Aeronautics Research Mission Directorate (ARMD) has recently solicited proposals and awarded funds for research and development to achieve and exceed the goals envisioned in the ARMD Strategic Implementation Plan (SIP). The Hyper-Spectral Communications and Networking for Air Traffic Management (ATM) (HSCNA) project is the only University Leadership Initiative (ULI) program to address communications and networking (and to a degree, navigation and surveillance). This paper will provide an overview of the HSCNA project, and specifically describe two of the project's technical challenges: comprehensive aviation communications and networking assessment, and proposed multi-band and multimode communications and networking. The primary goals will be described, as will be research and development aimed to achieve and exceed these goals. Some example initial results are also provided.

  14. Improving Spectral Crop Coefficient Approach with Raw Image Digital Count Data to Estimate Crop Water Use (United States)

    Shafian, S.; Maas, S. J.; Rajan, N.


    Water resources and agricultural applications require knowledge of crop water use (CWU) over a range of spatial and temporal scales. Due to the spatial density of meteorological stations, the resolution of CWU estimates based on these data is fairly coarse and not particularly suitable or reliable for water resources planning, irrigation scheduling and decision making. Various methods have been developed for quantifying CWU of agricultural crops. In this study, an improved version of the spectral crop coefficient which includes the effects of stomatal closure is applied. Raw digital count (DC) data in the red, near-infrared, and thermal infrared (TIR) spectral bands of Landsat-7 and Landsat-8 imaging sensors are used to construct the TIR-ground cover (GC) pixel data distribution and estimate the effects of stomatal closure. CWU is then estimated by combining results of the spectral crop coefficient approach and the stomatal closer effect. To test this approach, evapotranspiration was measured in 5 agricultural fields in the semi-arid Texas High Plains during the 2013 and 2014 growing seasons and compared to corresponding estimated values of CWU determined using this approach. The results showed that the estimated CWU from this approach was strongly correlated (R2 = 0.79) with observed evapotranspiration. In addition, the results showed that considering the stomatal closer effect in the proposed approach can improve the accuracy of the spectral crop coefficient method. These results suggest that the proposed approach is suitable for operational estimation of evapotranspiration and irrigation scheduling where irrigation is used to replace the daily CWU of a crop.

  15. High-dynamic range compressive spectral imaging by grayscale coded aperture adaptive filtering

    Directory of Open Access Journals (Sweden)

    Nelson Eduardo Diaz


    Full Text Available The coded aperture snapshot spectral imaging system (CASSI is an imaging architecture which senses the three dimensional informa-tion of a scene with two dimensional (2D focal plane array (FPA coded projection measurements. A reconstruction algorithm takes advantage of the compressive measurements sparsity to recover the underlying 3D data cube. Traditionally, CASSI uses block-un-block coded apertures (BCA to spatially modulate the light. In CASSI the quality of the reconstructed images depends on the design of these coded apertures and the FPA dynamic range. This work presents a new CASSI architecture based on grayscaled coded apertu-res (GCA which reduce the FPA saturation and increase the dynamic range of the reconstructed images. The set of GCA is calculated in a real-time adaptive manner exploiting the information from the FPA compressive measurements. Extensive simulations show the attained improvement in the quality of the reconstructed images when GCA are employed.  In addition, a comparison between traditional coded apertures and GCA is realized with respect to noise tolerance.

  16. [Research on Anti-Camouflaged Target System Based on Spectral Detection and Image Recognition]. (United States)

    Wang, Bo; Gao, Yu-bin; Lu, Xu-tao


    To be able to quickly and efficiently identify Enemy camouflaged maneuvering targets in the wild environment, target recognition system was designed based on spectral detection technology and video target recognition method. System was composed of the visible light image acquisition module and static interferometer module. The system used image recognition technology to obtain two dimensional video images of measurement region, and through spectrum detection technology to identify targets. Ultimately, measured target was rebuilt on the corresponding position in the image, so the visual target recognition was realized. After the theoretical derivation, identifiable target function formula of the system was obtained, and based on the functional relationship to complete the quantitative experiments for target recognition. In the experiments, maneuvering target in the battlefield environment was simulated by a car. At different distances, the background was respectively selected to detect a flat wasteland, bushes and abandoned buildings. Obvious target, coated camouflage target and covered disguises target was respectively spectrum detection. Experimental results show that spectrum detection technology can overcome the shortcomings of unrecognized the camouflaged target by traditional image target recognition method. Testing background had some influence on spectrum detection results, and the continuity of the background was conducive to target recognition. Covered disguises target was the hardest to identify in various camouflage mode. As the distance between the target and the system increases, signal to noise ratio of the system was reduced. In summary, the system can achieve effective recognition of camouflaged targets to meet the design requirements.

  17. Performance Evaluation of Machine Learning Algorithms for Urban Pattern Recognition from Multi-spectral Satellite Images

    Directory of Open Access Journals (Sweden)

    Marc Wieland


    Full Text Available In this study, a classification and performance evaluation framework for the recognition of urban patterns in medium (Landsat ETM, TM and MSS and very high resolution (WorldView-2, Quickbird, Ikonos multi-spectral satellite images is presented. The study aims at exploring the potential of machine learning algorithms in the context of an object-based image analysis and to thoroughly test the algorithm’s performance under varying conditions to optimize their usage for urban pattern recognition tasks. Four classification algorithms, Normal Bayes, K Nearest Neighbors, Random Trees and Support Vector Machines, which represent different concepts in machine learning (probabilistic, nearest neighbor, tree-based, function-based, have been selected and implemented on a free and open-source basis. Particular focus is given to assess the generalization ability of machine learning algorithms and the transferability of trained learning machines between different image types and image scenes. Moreover, the influence of the number and choice of training data, the influence of the size and composition of the feature vector and the effect of image segmentation on the classification accuracy is evaluated.

  18. Standard resolution spectral domain optical coherence tomography in clinical ophthalmic imaging (United States)

    Szkulmowska, Anna; Cyganek, Marta; Targowski, Piotr; Kowalczyk, Andrzej; Kaluzny, Jakub J.; Wojtkowski, Maciej; Fujimoto, James G.


    In this study we show clinical application of Spectral Optical Coherence Tomography (SOCT), which enables operation with 40 times higher speed than commercial Stratus OCT instrument. Using high speed SOCT instrument it is possible to collect more information and increase the quality of reconstructed cross-sectional retinal images. Two generations of compact and portable clinical SOCT instruments were constructed in Medical Physics Group at Nicolaus Copernicus University in Poland. The first SOCT instrument is a low-cost system operating with standard, 12 micrometer axial resolution and the second is high resolution system using combined superluminescent diodes light source, which enables imaging with 4.8 micrometer axial resolution. Both instruments have worked in Ophthalmology Clinic of Collegium Medicum in Bydgoszcz. During the study we have examined 44 patients with different pathologies of the retina including: Central Serous Chorioretinopathy (CSC), Choroidal Neovascularization (CNV), Pigment Epithelial Detachment (PED), Macular Hole, Epiretinal Membrane, Outer Retinal Infarction etc. All these pathologies were first diagnosed by classical methods (like fundus camera imaging and angiography) and then examined with the aid of SOCT system. In this contribution we present examples of SOCT cross-sectional retinal imaging of pathologic eyes measured with standard resolution. We also compare cross-sectional images of pathology obtained by standard and high resolution systems.

  19. MARS Spectral Imaging: From High-Energy Physics to a Biomedical Business

    CERN Multimedia

    CERN. Geneva


    Abstract MARS spectral scanners provide colour X-Ray images. Current MARS pre-clinical scanners enable researchers and clinicians to measure biochemical and physiological processes in specimens, and animal models of disease. The scanners have developed from a 10 year scientific collaboration between New Zealand and CERN. In parallel a company, MARS Bioimaging Ltd, was founded to commercialise the technology by productising the scanner and selling it to biomedical users around the world. The New Zealand team is now more than 30 people including staff and students from the fields of physics, engineering, computing, maths, radiology, cardiology, biochemistry, oncology, and orthopaedics. Current work with pre-clinical scanners has concluded that the technology will be  useful in heart disease, stroke, arthritis, joint replacements, and cancer. In late 2014, the government announced funding for NZ to build a MARS scanner capable of imaging humans. Bio Professor Anthony Butler is a radiologist wit...

  20. Spectral embedding-based multiview features fusion for content-based image retrieval (United States)

    Feng, Lin; Yu, Laihang; Zhu, Hai


    In many computer vision applications, an object can be described by multiple features from different views. For instance, to characterize an image well, a variety of visual features is exploited to represent color, texture, and shape information and encode each feature into a vector. Recently, we have witnessed a surge of interests of combining multiview features for image recognition and classification. However, these features are always located in different high-dimensional spaces, which challenge the features fusion, and many conventional methods fail to integrate compatible and complementary information from multiple views. To address the above issues, multifeatures fusion framework is proposed, which utilizes multiview spectral embedding and a unified distance metric to integrate features, the alternating optimization is reconstructed by learning the complementarities between different views. This method exploits complementary property of different views and obtains a low-dimensional embedding wherein the different dimensional subspace. Various experiments on several benchmark datasets have verified the excellent performance of the proposed method.

  1. Regularization of nonlinear decomposition of spectral x-ray projection images. (United States)

    Ducros, Nicolas; Abascal, Juan Felipe Perez-Juste; Sixou, Bruno; Rit, Simon; Peyrin, Françoise


    Exploiting the x-ray measurements obtained in different energy bins, spectral computed tomography (CT) has the ability to recover the 3-D description of a patient in a material basis. This may be achieved solving two subproblems, namely the material decomposition and the tomographic reconstruction problems. In this work, we address the material decomposition of spectral x-ray projection images, which is a nonlinear ill-posed problem. Our main contribution is to introduce a material-dependent spatial regularization in the projection domain. The decomposition problem is solved iteratively using a Gauss-Newton algorithm that can benefit from fast linear solvers. A Matlab implementation is available online. The proposed regularized weighted least squares Gauss-Newton algorithm (RWLS-GN) is validated on numerical simulations of a thorax phantom made of up to five materials (soft tissue, bone, lung, adipose tissue, and gadolinium), which is scanned with a 120 kV source and imaged by a 4-bin photon counting detector. To evaluate the method performance of our algorithm, different scenarios are created by varying the number of incident photons, the concentration of the marker and the configuration of the phantom. The RWLS-GN method is compared to the reference maximum likelihood Nelder-Mead algorithm (ML-NM). The convergence of the proposed method and its dependence on the regularization parameter are also studied. We show that material decomposition is feasible with the proposed method and that it converges in few iterations. Material decomposition with ML-NM was very sensitive to noise, leading to decomposed images highly affected by noise, and artifacts even for the best case scenario. The proposed method was less sensitive to noise and improved contrast-to-noise ratio of the gadolinium image. Results were superior to those provided by ML-NM in terms of image quality and decomposition was 70 times faster. For the assessed experiments, material decomposition was possible

  2. A theoretical-experimental methodology for assessing the sensitivity of biomedical spectral imaging platforms, assays, and analysis methods. (United States)

    Leavesley, Silas J; Sweat, Brenner; Abbott, Caitlyn; Favreau, Peter; Rich, Thomas C


    Spectral imaging technologies have been used for many years by the remote sensing community. More recently, these approaches have been applied to biomedical problems, where they have shown great promise. However, biomedical spectral imaging has been complicated by the high variance of biological data and the reduced ability to construct test scenarios with fixed ground truths. Hence, it has been difficult to objectively assess and compare biomedical spectral imaging assays and technologies. Here, we present a standardized methodology that allows assessment of the performance of biomedical spectral imaging equipment, assays, and analysis algorithms. This methodology incorporates real experimental data and a theoretical sensitivity analysis, preserving the variability present in biomedical image data. We demonstrate that this approach can be applied in several ways: to compare the effectiveness of spectral analysis algorithms, to compare the response of different imaging platforms, and to assess the level of target signature required to achieve a desired performance. Results indicate that it is possible to compare even very different hardware platforms using this methodology. Future applications could include a range of optimization tasks, such as maximizing detection sensitivity or acquisition speed, providing high utility for investigators ranging from design engineers to biomedical scientists. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  3. Development of detailed design concepts for the EarthCARE multi-spectral imager (United States)

    Lobb, Dan; Escadero, Isabel; Chang, Mark; Gode, Sophie


    The EarthCARE mission is dedicated to the study of clouds by observations from a satellite in low Earth orbit. The payload will include major radar and LIDAR instruments, supported by a multi-spectral imager (MSI) and a broadband radiometer. The paper describes development of detailed design concepts for the MSI, and analysis of critical performance parameters. The MSI will form Earth images at 500m ground sample distance (GSD) over a swath width of 150km, from a nominal platform altitude of around 400km. The task of the MSI is to provide spatial context for the single-point measurements made by the radar and LIDAR systems; it will image Earth in 7 spectral bands: one visible, one near-IR, two short-wave IR and three thermal IR. The MSI instrument will be formed in two parts: a visible-NIR-SWIR (VNS) system, radiometrically calibrated using a sunilluminated diffuser, and a thermal IR (TIR) system calibrated using cold space and an internal black-body. The VNS system will perform push-broom imaging, using linear array detectors (silicon and InGaAs) and 4 separate lenses. The TIR system will use a microbolometer array detector in a time delay and integration (TDI) mode. Critical issues discussed for the VNS system include detector selection and detailed optical design trade-offs. The latter are related to the desirability of dichroics to achieve a common aperture, which influences the calibration hardware and lens design. The TIR system's most significant problems relate to control of random noise and bias errors, requiring optimisation of detector operation and calibration procedures.

  4. The Cross radiometric calibration test of KOMPSAT-2 multi-spectral images over Desert area (United States)

    Yeom, J.; Kim, H.


    The KOrea MultiPurpose SAtellite-2 (KOMPSAT-2) satellite was launched on July 28, 2006 and has been operated to support multi-purpose monitoring of earth surface with high spatial resolution. The KOMPSAT-2 has 1m panchromatic image and 4-m multi spectral bands such as blue (450-520nm), green (520-600nm), red (630-690nm), NIR (760-900nm). Since the performance of sensor onboard satellites is usually degraded in orbit after launch, it is necessary to calibrate spectral radiance for getting accurate TOP radiance values by performing cross radiometric methods. In this study, Cross Calibration method is adopted for the estimation of TOA (Top of Atmosphere) radiance to KOMPSAT-2 multi spectral images with ancillary data such as LandSat TOA radiance, MODIS products, and atmospheric measurements. For the calibration desert areas are served as reference target objects because its relative high surface reflectance is not very sensitive to the presence of low aerosol load, which is main probleggm of inferring TOA radiance by using Radiative Transfer model. Although desert areas have low aerosol effect when comparing with other reference targets such like deep Ocean, surface bidirectional effects predominant in desert should be considered to estimate TOA radiance. In this study, MODIS 16-day Level 3 BRDF/albedo model parameters product (MCD43A1) is used to correct surface bidirectional effects by inputting 6S parameters. The surface reflectance over target area is simulated from LandSat recalibrated TOA radiance with AERONET measurement, and MODIS BRDF product. After then, KOMPSAT-2 TOA radiance is simulated from LandSat-based surface target reflectance from 6S radiative transfer model. Finally, the estimated TOA radiance from KOMPSAT-2 is compared with the KOMPSAT-2's DN values in order to produce DN to Radiance coefficients.

  5. Spectral-Spatial Classification of Hyperspectral Image Based on Kernel Extreme Learning Machine

    Directory of Open Access Journals (Sweden)

    Chen Chen


    Full Text Available Extreme learning machine (ELM is a single-layer feedforward neural network based classifier that has attracted significant attention in computer vision and pattern recognition due to its fast learning speed and strong generalization. In this paper, we propose to integrate spectral-spatial information for hyperspectral image classification and exploit the benefits of using spatial features for the kernel based ELM (KELM classifier. Specifically, Gabor filtering and multihypothesis (MH prediction preprocessing are two approaches employed for spatial feature extraction. Gabor features have currently been successfully applied for hyperspectral image analysis due to the ability to represent useful spatial information. MH prediction preprocessing makes use of the spatial piecewise-continuous nature of hyperspectral imagery to integrate spectral and spatial information. The proposed Gabor-filtering-based KELM classifier and MH-prediction-based KELM classifier have been validated on two real hyperspectral datasets. Classification results demonstrate that the proposed methods outperform the conventional pixel-wise classifiers as well as Gabor-filtering-based support vector machine (SVM and MH-prediction-based SVM in challenging small training sample size conditions.

  6. Near infrared spectral imaging of explosives using a tunable laser source

    Energy Technology Data Exchange (ETDEWEB)

    Klunder, G L; Margalith, E; Nguyen, L K


    Diffuse reflectance near infrared hyperspectral imaging is an important analytical tool for a wide variety of industries, including agriculture consumer products, chemical and pharmaceutical development and production. Using this technique as a method for the standoff detection of explosive particles is presented and discussed. The detection of the particles is based on the diffuse reflectance of light from the particle in the near infrared wavelength range where CH, NH, OH vibrational overtones and combination bands are prominent. The imaging system is a NIR focal plane array camera with a tunable OPO/laser system as the illumination source. The OPO is programmed to scan over a wide spectral range in the NIR and the camera is synchronized to record the light reflected from the target for each wavelength. The spectral resolution of this system is significantly higher than that of hyperspectral systems that incorporate filters or dispersive elements. The data acquisition is very fast and the entire hyperspectral cube can be collected in seconds. A comparison of data collected with the OPO system to data obtained with a broadband light source with LCTF filters is presented.

  7. Spectral-spatial classification of hyperspectral images using trilateral filter and stacked sparse autoencoder (United States)

    Zhao, Chunhui; Wan, Xiaoqing; Zhao, Genping; Yan, Yiming


    A spectral-spatial classification method using a trilateral filter (TF) and stacked sparse autoencoder (SSA) for improving the classification accuracy of hyperspectral image (HSI) is proposed. The operation is carried out in two main stages: edge-preserved smoothing and high-level feature learning. First, a reference image obtained from dual tree complex wavelet transform is adopted in a TF for smoothing the HSI. As expected, the filter not only can effectively attenuate the mixed noise (e.g., Gaussian noise and impulse noise) where the bilateral filter shows poor performance but also can produce useful spectral-spatial features from HSI by considering geometric closeness and photometric similarity between pixels simultaneously. Second, an artificial fish swarm algorithm (AFSA) is first introduced into a SSA, and the proposed deep learning architecture is used to adaptively exploit more abstract and differentiable high-level feature representations from the smoothed HSI, based on the factor that AFSA provides better trade-off among concurrency, search efficiency, and convergence rate compared with gradient descent and back-propagation algorithms in a traditional SSA. Finally, a random forest classifier is utilized to perform supervised fine-tuning and classification. Experimental results on two real HSI data sets demonstrate that the proposed method generates competitive performance compared with those of conventional methods.

  8. Assessment of 70-keV virtual monoenergetic spectral images in abdominal CT imaging: A comparison study to conventional polychromatic 120-kVp images. (United States)

    Rassouli, Negin; Chalian, Hamid; Rajiah, Prabhakar; Dhanantwari, Amar; Landeras, Luis


    To evaluate the image quality of 70-keV virtual monoenergetic (monoE) abdominal CT images compared to 120-kVp polychromatic images generated from a spectral detector CT (SDCT) scanner. This prospective study included generation of a 120-kVp polychromatic dataset and a 70-keV virtual monoE dataset after a single contrast-enhanced CT acquisition on a SDCT scanner (Philips Healthcare) during portal venous phase. The attenuation values (HU), noise, signal-to-noise ratio (SNR), and contrast-to-noise ratio (CNR) were measured in the liver, spleen, pancreas, kidney, aorta, portal vein, and muscle. The subjective image quality including noise, soft tissue contrast, sharpness, and overall image quality were graded on a 5-point Likert scale by two radiologists independently (1-worst image quality, 5-best image quality). Statistical analysis was performed using paired sample t test and Fleiss's Kappa. Fifty-five patients (54.3 ± 16.8 y/o; 28 M, 27 F) were recruited. The noise of target organs was significantly lower in virtual monoE images in comparison to polychromatic images (p virtual monoE images (p virtual monoE images was significantly better (p virtual monoE images, respectively. The inter-reader agreement for overall image quality was good (Kappa were 0.767 and 0.762 for polychromatic and virtual monoE images, respectively). In abdominal imaging, 70-keV virtual monoE CT images demonstrated significantly better noise, SNR, CNR, and subjective score compared to conventional 120-kVp polychromatic images.

  9. [Algae identification research based on fluorescence spectral imaging technology combined with cluster analysis and principal component analysis]. (United States)

    Liang, Man; Huang, Fu-rong; He, Xue-jia; Chen, Xing-dan


    In order to explore rapid real-time algae detection methods, in the present study experiments were carried out to use fluorescence spectral imaging technology combined with a pattern recognition method for identification research of different types of algae. The fluorescence effect of algae samples is obvious during the detection. The fluorescence spectral imaging system was adopted to collect spectral images of 40 algal samples. Through image denoising, binarization processing and making sure the effective pixels, the spectral curves of each sample were drawn according to the spectral cube. The spectra in the 400-720 nm wavelength range were obtained. Then, two pattern recognition methods, i.e., hierarchical cluster analysis and principal component analysis, were used to process the spectral data. The hierarchical cluster analysis results showed that the Euclidean distance method and average weighted method were used to calculate the cluster distance between samples, and the samples could be correctly classified at a level of the distance L=2.452 or above, with an accuracy of 100%. The principal component analysis results showed that first-order derivative, second-order derivative, multiplicative scatter correction, standard normal variate and other pretreatments were carried out on raw spectral data, then principal component analysis was conducted, among which the identification effect after the second-order derivative pretreatment was shown to be the most effective, and eight types of algae samples were independently distributed in the principal component eigenspace. It was thus shown that it was feasible to use fluorescence spectral imaging technology combined with cluster analysis and principal component analysis for algae identification. The method had the characteristics of being easy to operate, fast and nondestructive.

  10. Non-invasive, Contrast-enhanced Spectral Imaging of Breast Cancer Signatures in Preclinical Animal Models In vivo. (United States)

    Ramanujan, V Krishnan; Ren, Songyang; Park, Sangyong; Farkas, Daniel L


    We report here a non-invasive multispectral imaging platform for monitoring spectral reflectance and fluorescence images from primary breast carcinoma and metastatic lymph nodes in preclinical rat model in vivo. The system is built around a monochromator light source and an acousto-optic tunable filter (AOTF) for spectral selection. Quantitative analysis of the measured reflectance profiles in the presence of a widely-used lymphazurin dye clearly demonstrates the capability of the proposed imaging platform to detect tumor-associated spectral signatures in the primary tumors as well as metastatic lymphatics. Tumor-associated changes in vascular oxygenation and interstitial fluid pressure are reasoned to be the physiological sources of the measured reflectance profiles. We also discuss the translational potential of our imaging platform in intra-operative clinical setting.

  11. Imaging of acute superior mesenteric artery embolus using spectral CT in a canine model (United States)

    Wang, Hongzhen; Xiao, Xigang; Zhang, Wei; Ma, Zhiwen; Zhang, Jin ling; Tang, Liang


    Objective: To explore the diagnostic value of single-source dual-energy spectral CT (sDECT) imaging in an acute superior mesenteric artery embolus (SMAE) canine model. Methods: Pre-contrast and double-phase contrast-enhanced sDECT were performed before and after embolization in eight SMAE dog models. Monochromatic images of embolized intestine with the best contrast-to-noise ratio (CNR) were obtained and compared with the polychromatic images. CT parameters including attenuation value, iodine content, water content and thickness of the embolized intestinal segments were obtained, and normalized difference in iodine concentration (NDIC) was calculated. Results: The CNR in pre-contrast, arterial phase and portal venous phase at 4 h after embolization was 1.11 ± 1.23, 13.50 ± 1.54 and 10.63 ± 3.75, respectively, significantly higher than those of the polychromatic images (p clearly revealed the embolized intestinal segments, which were highly consistent with the gross findings. The difference in attenuation values between the embolization area and non-embolization area in the monochromatic images was 105.06 ± 35.35 HU, higher than that in the polychromatic images (p provide the optimal monochromatic images and allow increased detection rates of lesions. sDECT is a very promising tool for quantitative diagnosis of SMAE. Advances in knowledge: Our research provides more quantitative parameters for the assessment of SMAE by sDECT. PMID:26185922

  12. Improved classification accuracy of powdery mildew infection levels of wine grapes by spatial-spectral analysis of hyperspectral images. (United States)

    Knauer, Uwe; Matros, Andrea; Petrovic, Tijana; Zanker, Timothy; Scott, Eileen S; Seiffert, Udo


    Hyperspectral imaging is an emerging means of assessing plant vitality, stress parameters, nutrition status, and diseases. Extraction of target values from the high-dimensional datasets either relies on pixel-wise processing of the full spectral information, appropriate selection of individual bands, or calculation of spectral indices. Limitations of such approaches are reduced classification accuracy, reduced robustness due to spatial variation of the spectral information across the surface of the objects measured as well as a loss of information intrinsic to band selection and use of spectral indices. In this paper we present an improved spatial-spectral segmentation approach for the analysis of hyperspectral imaging data and its application for the prediction of powdery mildew infection levels (disease severity) of intact Chardonnay grape bunches shortly before veraison. Instead of calculating texture features (spatial features) for the huge number of spectral bands independently, dimensionality reduction by means of Linear Discriminant Analysis (LDA) was applied first to derive a few descriptive image bands. Subsequent classification was based on modified Random Forest classifiers and selective extraction of texture parameters from the integral image representation of the image bands generated. Dimensionality reduction, integral images, and the selective feature extraction led to improved classification accuracies of up to [Formula: see text] for detached berries used as a reference sample (training dataset). Our approach was validated by predicting infection levels for a sample of 30 intact bunches. Classification accuracy improved with the number of decision trees of the Random Forest classifier. These results corresponded with qPCR results. An accuracy of 0.87 was achieved in classification of healthy, infected, and severely diseased bunches. However, discrimination between visually healthy and infected bunches proved to be challenging for a few samples

  13. Second Harmonic Generation Imaging and Fourier Transform Spectral Analysis Reveal Damage in Fatigue-Loaded Tendons (United States)

    Fung, David T.; Sereysky, Jedd B.; Basta-Pljakic, Jelena; Laudier, Damien M.; Huq, Rumana; Jepsen, Karl J.; Schaffler, Mitchell B.; Flatow, Evan L.


    Conventional histologic methods provide valuable information regarding the physical nature of damage in fatigue-loaded tendons, limited to thin, two-dimensional sections. We introduce an imaging method that characterizes tendon microstructure three-dimensionally and develop quantitative, spatial measures of damage formation within tendons. Rat patellar tendons were fatigue loaded in vivo to low, moderate, and high damage levels. Tendon microstructure was characterized using multiphoton microscopy by capturing second harmonic generation signals. Image stacks were analyzed using Fourier transform-derived computations to assess frequency-based properties of damage. Results showed 3D microstructure with progressively increased density and variety of damage patterns, characterized by kinked deformations at low, fiber dissociation at moderate, and fiber thinning and out-of-plane discontinuities at high damage levels. Image analysis generated radial distributions of power spectral gradients, establishing a “fingerprint” of tendon damage. Additionally, matrix damage was mapped using local, discretized orientation vectors. The frequency distribution of vector angles, a measure of damage content, differed from one damage level to the next. This study established an objective 3D imaging and analysis method for tendon microstructure, which characterizes directionality and anisotropy of the tendon microstructure and quantitative measures of damage that will advance investigations of the microstructural basis of degradation that precedes overuse injuries. PMID:20232150

  14. A novel spectral imaging system for use during pancreatic cancer surgery (United States)

    Peller, Joseph; Shipley, A. E.; Trammell, Susan R.; Abolbashari, Mehrdad; Farahi, Faramarz


    Pancreatic cancer is the fourth leading cause of cancer death in the United States. Most pancreatic cancer patients will die within the first year of diagnosis, and just 6% will survive five years. Currently, surgery is the only treatment that offers a chance of cure for pancreatic cancer patients. Accurately identifying the tumors margins in real time is a significant difficulty during pancreatic cancer surgery and contributes to the low 5-year survival rate. We are developing a hyperspectral imaging system based on compressive sampling for real-time tumor margin detection to facilitate more effective removal of diseased tissue and result in better patient outcomes. Recent research has shown that optical spectroscopy can be used to distinguish between healthy and diseased tissue and will likely become an important minimally invasive diagnostic tool for a range of diseases. Reflectance spectroscopy provides information about tissue morphology, while laser-induced autofluorescence spectra give accurate information about the content and molecular structure of the emitting tissue. We are developing a spectral imaging system that targets emission from collagen and NAD(P)H as diagnostics for differentiating healthy and diseased pancreatic tissue. In this study, we demonstrate the ability of our camera system to acquire hyperspectral images and its potential application for imaging autofluorescent emission from pancreatic tissue.

  15. The GOES-R Advanced Baseline Imager: detector spectral response effects on thermal emissive band calibration (United States)

    Pearlman, Aaron J.; Padula, Francis; Cao, Changyong; Wu, Xiangqian


    The Advanced Baseline Imager (ABI) will be aboard the National Oceanic and Atmospheric Administration's Geostationary Operational Environmental Satellite R-Series (GOES-R) to supply data needed for operational weather forecasts and long-term climate variability studies, which depend on high quality data. Unlike the heritage operational GOES systems that have two or four detectors per band, ABI has hundreds of detectors per channel requiring calibration coefficients for each one. This increase in number of detectors poses new challenges for next generation sensors as each detector has a unique spectral response function (SRF) even though only one averaged SRF per band is used operationally to calibrate each detector. This simplified processing increases computational efficiency. Using measured system-level SRF data from pre-launch testing, we have the opportunity to characterize the calibration impact using measured SRFs, both per detector and as an average of detector-level SRFs similar to the operational version. We calculated the spectral response impacts for the thermal emissive bands (TEB) theoretically, by simulating the ABI response viewing an ideal blackbody and practically, with the measured ABI response to an external reference blackbody from the pre-launch TEB calibration test. The impacts from the practical case match the theoretical results using an ideal blackbody. The observed brightness temperature trends show structure across the array with magnitudes as large as 0.1 K for and 12 (9.61 µm), and 0.25 K for band 14 (11.2 µm) for a 300 K blackbody. The trends in the raw ABI signal viewing the blackbody support the spectral response measurements results, since they show similar trends in bands 12 (9.61µm), and 14 (11.2 µm), meaning that the spectral effects dominate the response differences between detectors for these bands. We further validated these effects using the radiometric bias calculated between calibrations using the external blackbody and

  16. Spectral embedding finds meaningful (relevant structure in image and microarray data

    Directory of Open Access Journals (Sweden)

    Solka Jeffrey L


    Full Text Available Abstract Background Accurate methods for extraction of meaningful patterns in high dimensional data have become increasingly important with the recent generation of data types containing measurements across thousands of variables. Principal components analysis (PCA is a linear dimensionality reduction (DR method that is unsupervised in that it relies only on the data; projections are calculated in Euclidean or a similar linear space and do not use tuning parameters for optimizing the fit to the data. However, relationships within sets of nonlinear data types, such as biological networks or images, are frequently mis-rendered into a low dimensional space by linear methods. Nonlinear methods, in contrast, attempt to model important aspects of the underlying data structure, often requiring parameter(s fitting to the data type of interest. In many cases, the optimal parameter values vary when different classification algorithms are applied on the same rendered subspace, making the results of such methods highly dependent upon the type of classifier implemented. Results We present the results of applying the spectral method of Lafon, a nonlinear DR method based on the weighted graph Laplacian, that minimizes the requirements for such parameter optimization for two biological data types. We demonstrate that it is successful in determining implicit ordering of brain slice image data and in classifying separate species in microarray data, as compared to two conventional linear methods and three nonlinear methods (one of which is an alternative spectral method. This spectral implementation is shown to provide more meaningful information, by preserving important relationships, than the methods of DR presented for comparison. Tuning parameter fitting is simple and is a general, rather than data type or experiment specific approach, for the two datasets analyzed here. Tuning parameter optimization is minimized in the DR step to each subsequent

  17. Imaging the spectral reflectance properties of bipolar radiofrequency-fused bowel tissue (United States)

    Clancy, Neil T.; Arya, Shobhit; Stoyanov, Danail; Du, Xiaofei; Hanna, George B.; Elson, Daniel S.


    Delivery of radiofrequency (RF) electrical energy is used during surgery to heat and seal tissue, such as vessels, allowing resection without blood loss. Recent work has suggested that this approach may be extended to allow surgical attachment of larger tissue segments for applications such as bowel anastomosis. In a large series of porcine surgical procedures bipolar RF energy was used to resect and re-seal the small bowel in vivo with a commercial tissue fusion device (Ligasure; Covidien PLC, USA). The tissue was then imaged with a multispectral imaging laparoscope to obtain a spectral datacube comprising both fused and healthy tissue. Maps of blood volume, oxygen saturation and scattering power were derived from the measured reflectance spectra using an optimised light-tissue interaction model. A 60% increase in reflectance of visible light (460-700 nm) was observed after fusion, with the tissue taking on a white appearance. Despite this the distinctive shape of the haemoglobin absorption spectrum was still noticeable in the 460-600 nm wavelength range. Scattering power increased in the fused region in comparison to normal serosa, while blood volume and oxygen saturation decreased. Observed fusion-induced changes in the reflectance spectrum are consistent with the biophysical changes induced through tissue denaturation and increased collagen cross-linking. The multispectral imager allows mapping of the spatial extent of these changes and classification of the zone of damaged tissue. Further analysis of the spectral data in parallel with histopathological examination of excised specimens will allow correlation of the optical property changes with microscopic alterations in tissue structure.

  18. A comparison of the imaging characteristics of the new Kodak Hyper Speed G film with the current T-MAT G/RA film and the CR 9000 system

    Energy Technology Data Exchange (ETDEWEB)

    Monnin, P [Institut universitaire de Radiophysique Appliquee (IRA), CH-1007 Lausanne (Switzerland); Gutierrez, D [Institut universitaire de Radiophysique Appliquee (IRA), CH-1007 Lausanne (Switzerland); Bulling, S [Institut universitaire de Radiophysique Appliquee (IRA), CH-1007 Lausanne (Switzerland); Lepori, D [Department of Radiology, University Hospital Center (CHUV), CH-1011 Lausanne (Switzerland); Verdun, F R [Institut universitaire de Radiophysique Appliquee (IRA), CH-1007 Lausanne (Switzerland)


    Three standard radiation qualities (RQA 3, RQA 5 and RQA 9) and two screens, Kodak Lanex Regular and Insight Skeletal, were used to compare the imaging performance and dose requirements of the new Kodak Hyper Speed G and the current Kodak T-MAT G/RA medical x-ray films. The noise equivalent quanta (NEQ) and detective quantum efficiencies (DQE) of the four screen-film combinations were measured at three gross optical densities and compared with the characteristics for the Kodak CR 9000 system with GP (general purpose) and HR (high resolution) phosphor plates. The new Hyper Speed G film has double the intrinsic sensitivity of the T-MAT G/RA film and a higher contrast in the high optical density range for comparable exposure latitude. By providing both high sensitivity and high spatial resolution, the new film significantly improves the compromise between dose and image quality. As expected, the new film has a higher noise level and a lower signal-to-noise ratio than the standard film, although in the high frequency range this is compensated for by a better resolution, giving better DQE results-especially at high optical density. Both screen-film systems outperform the phosphor plates in terms of MTF and DQE for standard imaging conditions (Regular screen at RQA 5 and RQA 9 beam qualities). At low energy (RQA 3), the CR system has a comparable low-frequency DQE to screen-film systems when used with a fine screen at low and middle optical densities, and a superior low-frequency DQE at high optical density.

  19. Multimodal ophthalmic imaging using spectrally encoded scanning laser ophthalmoscopy and optical coherence tomography (United States)

    El-Haddad, Mohamed T.; Malone, Joseph D.; Li, Jianwei D.; Bozic, Ivan; Arquitola, Amber M.; Joos, Karen M.; Patel, Shriji N.; Tao, Yuankai K.


    Ophthalmic surgery involves manipulation of delicate, layered tissue structures on milli- to micrometer scales. Traditional surgical microscopes provide an inherently two-dimensional view of the surgical field with limited depth perception which precludes accurate depth-resolved visualization of these tissue layers, and limits the development of novel surgical techniques. We demonstrate multimodal swept-source spectrally encoded scanning laser ophthalmoscopy and optical coherence tomography (SS-SESLO-OCT) to address current limitations of image-guided ophthalmic microsurgery. SS-SESLO-OCT provides inherently co-registered en face and cross-sectional field-of-views (FOVs) at a line rate of 400 kHz and >2 GPix/s throughput. We show in vivo imaging of the anterior segment and retinal fundus of a healthy volunteer, and preliminary results of multi-volumetric mosaicking for ultrawide-field retinal imaging with 90° FOV. Additionally, a scan-head was rapid-prototyped with a modular architecture which enabled integration of SS-SESLO-OCT with traditional surgical microscope and slit-lamp imaging optics. Ex vivo surgical maneuvers were simulated in cadaveric porcine eyes. The system throughput enabled volumetric acquisition at 10 volumes-per-second (vps) and allowed visualization of surgical dynamics in corneal sweeps, compressions, and dissections, and retinal sweeps, compressions, and elevations. SESLO en face images enabled simple real-time co-registration with the surgical microscope FOV, and OCT cross-sections provided depth-resolved visualization of instrument-tissue interactions. Finally, we demonstrate novel augmented-reality integration with the surgical view using segmentation overlays to aid surgical guidance. SS-SESLO-OCT may benefit clinical diagnostics by enabling aiming, registration, and mosaicking; and intraoperative imaging by allowing for real-time surgical feedback, instrument tracking, and overlays of computationally extracted biomarkers of disease.

  20. Urban Built-Up Area Extraction from Landsat TM/ETM+ Images Using Spectral Information and Multivariate Texture

    Directory of Open Access Journals (Sweden)

    Jun Zhang


    Full Text Available Urban built-up area information is required by various applications. However, urban built-up area extraction using moderate resolution satellite data, such as Landsat series data, is still a challenging task due to significant intra-urban heterogeneity and spectral confusion with other land cover types. In this paper, a new method that combines spectral information and multivariate texture is proposed. The multivariate textures are separately extracted from multispectral data using a multivariate variogram with different distance measures, i.e., Euclidean, Mahalanobis and spectral angle distances. The multivariate textures and the spectral bands are then combined for urban built-up area extraction. Because the urban built-up area is the only target class, a one-class classifier, one-class support vector machine, is used. For comparison, the classical gray-level co-occurrence matrix (GLCM is also used to extract image texture. The proposed method was evaluated using bi-temporal Landsat TM/ETM+ data of two megacity areas in China. Results demonstrated that the proposed method outperformed the use of spectral information alone and the joint use of the spectral information and the GLCM texture. In particular, the inclusion of multivariate variogram textures with spectral angle distance achieved the best results. The proposed method provides an effective way of extracting urban built-up areas from Landsat series images and could be applicable to other applications.

  1. Linear vs. Nonlinear Extreme Learning Machine for Spectral-Spatial Classification of Hyperspectral Images. (United States)

    Cao, Faxian; Yang, Zhijing; Ren, Jinchang; Jiang, Mengying; Ling, Wing-Kuen


    As a new machine learning approach, the extreme learning machine (ELM) has received much attention due to its good performance. However, when directly applied to hyperspectral image (HSI) classification, the recognition rate is low. This is because ELM does not use spatial information, which is very important for HSI classification. In view of this, this paper proposes a new framework for the spectral-spatial classification of HSI by combining ELM with loopy belief propagation (LBP). The original ELM is linear, and the nonlinear ELMs (or Kernel ELMs) are an improvement of linear ELM (LELM). However, based on lots of experiments and much analysis, it is found that the LELM is a better choice than nonlinear ELM for the spectral-spatial classification of HSI. Furthermore, we exploit the marginal probability distribution that uses the whole information in the HSI and learns such a distribution using the LBP. The proposed method not only maintains the fast speed of ELM, but also greatly improves the accuracy of classification. The experimental results in the well-known HSI data sets, Indian Pines, and Pavia University, demonstrate the good performance of the proposed method.

  2. Spectrally resolved fluorescence lifetime imaging to investigate cell metabolism in malignant and nonmalignant oral mucosa cells (United States)

    Rück, Angelika; Hauser, Carmen; Mosch, Simone; Kalinina, Sviatlana


    Fluorescence-guided diagnosis of tumor tissue is in many cases insufficient, because false positive results interfere with the outcome. Improvement through observation of cell metabolism might offer the solution, but needs a detailed understanding of the origin of autofluorescence. With respect to this, spectrally resolved multiphoton fluorescence lifetime imaging was investigated to analyze cell metabolism in metabolic phenotypes of malignant and nonmalignant oral mucosa cells. The time-resolved fluorescence characteristics of NADH were measured in cells of different origins. The fluorescence lifetime of bound and free NADH was calculated from biexponential fitting of the fluorescence intensity decay within different spectral regions. The mean lifetime was increased from nonmalignant oral mucosa cells to different squamous carcinoma cells, where the most aggressive cells showed the longest lifetime. In correlation with reports in the literature, the total amount of NADH seemed to be less for the carcinoma cells and the ratio of free/bound NADH was decreased from nonmalignant to squamous carcinoma cells. Moreover for squamous carcinoma cells a high concentration of bound NADH was found in cytoplasmic organelles (mainly mitochondria). This all together indicates that oxidative phosphorylation and a high redox potential play an important role in the energy metabolism of these cells.

  3. Modelling of Carbon Monoxide Air Pollution in Larg Cities by Evaluetion of Spectral LANDSAT8 Images (United States)

    Hamzelo, M.; Gharagozlou, A.; Sadeghian, S.; Baikpour, S. H.; Rajabi, A.


    Air pollution in large cities is one of the major problems that resolve and reduce it need multiple applications and environmental management. Of The main sources of this pollution is industrial activities, urban and transport that enter large amounts of contaminants into the air and reduces its quality. With Variety of pollutants and high volume manufacturing, local distribution of manufacturing centers, Testing and measuring emissions is difficult. Substances such as carbon monoxide, sulfur dioxide, and unburned hydrocarbons and lead compounds are substances that cause air pollution and carbon monoxide is most important. Today, data exchange systems, processing, analysis and modeling is of important pillars of management system and air quality control. In this study, using the spectral signature of carbon monoxide gas as the most efficient gas pollution LANDSAT8 images in order that have better spatial resolution than appropriate spectral bands and weather meters،SAM classification algorithm and Geographic Information System (GIS ), spatial distribution of carbon monoxide gas in Tehran over a period of one year from the beginning of 2014 until the beginning of 2015 at 11 map have modeled and then to the model valuation ،created maps were compared with the map provided by the Tehran quality comparison air company. Compare involved plans did with the error matrix and results in 4 types of care; overall, producer, user and kappa coefficient was investigated. Results of average accuracy were about than 80%, which indicates the fit method and data used for modeling.


    Directory of Open Access Journals (Sweden)

    M. Hamzelo


    Full Text Available Air pollution in large cities is one of the major problems that resolve and reduce it need multiple applications and environmental management. Of The main sources of this pollution is industrial activities, urban and transport that enter large amounts of contaminants into the air and reduces its quality. With Variety of pollutants and high volume manufacturing, local distribution of manufacturing centers, Testing and measuring emissions is difficult. Substances such as carbon monoxide, sulfur dioxide, and unburned hydrocarbons and lead compounds are substances that cause air pollution and carbon monoxide is most important. Today, data exchange systems, processing, analysis and modeling is of important pillars of management system and air quality control. In this study, using the spectral signature of carbon monoxide gas as the most efficient gas pollution LANDSAT8 images in order that have better spatial resolution than appropriate spectral bands and weather meters،SAM classification algorithm and Geographic Information System (GIS , spatial distribution of carbon monoxide gas in Tehran over a period of one year from the beginning of 2014 until the beginning of 2015 at 11 map have modeled and then to the model valuation ،created maps were compared with the map provided by the Tehran quality comparison air company. Compare involved plans did with the error matrix and results in 4 types of care; overall, producer, user and kappa coefficient was investigated. Results of average accuracy were about than 80%, which indicates the fit method and data used for modeling.

  5. A portable confocal hyperspectral microscope without any scan or tube lens and its application in fluorescence and Raman spectral imaging (United States)

    Li, Jingwei; Cai, Fuhong; Dong, Yongjiang; Zhu, Zhenfeng; Sun, Xianhe; Zhang, Hequn; He, Sailing


    In this study, a portable confocal hyperspectral microscope is developed. In traditional confocal laser scanning microscopes, scan lens and tube lens are utilized to achieve a conjugate relationship between the galvanometer and the back focal plane of the objective, in order to achieve a better resolution. However, these lenses make it difficult to scale down the volume of the system. In our portable confocal hyperspectral microscope (PCHM), the objective is placed directly next to the galvomirror. Thus, scan lens and tube lens are not included in our system and the size of this system is greatly reduced. Furthermore, the resolution is also acceptable in many biomedical and food-safety applications. Through reducing the optical length of the system, the signal detection efficiency is enhanced. This is conducive to realizing both the fluorescence and Raman hyperspectral imaging. With a multimode fiber as a pinhole, an improved image contrast is also achieved. Fluorescent spectral images for HeLa cells/fingers and Raman spectral images of kumquat pericarp are present. The spectral resolution and spatial resolutions are about 0.4 nm and 2.19 μm, respectively. These results demonstrate that this portable hyperspectral microscope can be used in in-vivo fluorescence imaging and in situ Raman spectral imaging.

  6. Miniature spectral imaging device for wide-field quantitative functional imaging of the morphological landscape of breast tumor margins (United States)

    Nichols, Brandon S.; Llopis, Antonio; Palmer, Gregory M.; McCachren, Samuel S., III; Senlik, Ozlem; Miller, David; Brooke, Martin A.; Jokerst, Nan M.; Geradts, Joseph; Greenup, Rachel; Ramanujam, Nimmi


    We have developed a portable, breast margin assessment probe leveraging diffuse optical spectroscopy to quantify the morphological landscape of breast tumor margins during breast conserving surgery. The approach presented here leverages a custom-made 16-channel annular photodiode imaging array (arranged in a 4×4 grid), a raster-scanning imaging platform with precision pressure control, and compressive sensing with an optimized set of eight wavelengths in the visible spectral range. A scalable Monte-Carlo-based inverse model is used to generate optical property [μs‧(λ) and μa(λ)] measures for each of the 16 simultaneously captured diffuse reflectance spectra. Subpixel sampling (0.75 mm) is achieved through incremental x, y raster scanning of the imaging probe, providing detailed optical parameter maps of breast margins over a 2×2 cm2 area in ˜9 min. The morphological landscape of a tumor margin is characterized using optical surrogates for the fat to fibroglandular content ratio, which has demonstrated diagnostic utility in delineating tissue subtypes in the breast.

  7. A simulation study of spectral Čerenkov luminescence imaging for tumour margin estimation (United States)

    Calvert, Nick; Helo, Yusef; Mertzanidou, Thomy; Tuch, David S.; Arridge, Simon R.; Stoyanov, Danail


    Breast cancer is the most common cancer in women in the world. Breast-conserving surgery (BCS) is a standard surgical treatment for breast cancer with the key objective of removing breast tissue, maintaining a negative surgical margin and providing a good cosmetic outcome. A positive surgical margin, meaning the presence of cancerous tissues on the surface of the breast specimen after surgery, is associated with local recurrence after therapy. In this study, we investigate a new imaging modality based on Cerenkov luminescence imaging (CLI) for the purpose of detecting positive surgical margins during BCS. We develop Monte Carlo (MC) simulations using the Geant4 nuclear physics simulation toolbox to study the spectrum of photons emitted given 18F-FDG and breast tissue properties. The resulting simulation spectra show that the CLI signal contains information that may be used to estimate whether the cancerous cells are at a depth of less than 1 mm or greater than 1 mm given appropriate imaging system design and sensitivity. The simulation spectra also show that when the source is located within 1 mm of the surface, the tissue parameters are not relevant to the model as the spectra do not vary significantly. At larger depths, however, the spectral information varies significantly with breast optical parameters, having implications for further studies and system design. While promising, further studies are needed to quantify the CLI response to more accurately incorporate tissue specific parameters and patient specific anatomical details.

  8. Unsupervised Segmentation of Spectral Images with a Spatialized Gaussian Mixture Model and Model Selection

    Directory of Open Access Journals (Sweden)

    Cohen S.X.


    Full Text Available In this article, we describe a novel unsupervised spectral image segmentation algorithm. This algorithm extends the classical Gaussian Mixture Model-based unsupervised classification technique by incorporating a spatial flavor into the model: the spectra are modelized by a mixture of K classes, each with a Gaussian distribution, whose mixing proportions depend on the position. Using a piecewise constant structure for those mixing proportions, we are able to construct a penalized maximum likelihood procedure that estimates the optimal partition as well as all the other parameters, including the number of classes. We provide a theoretical guarantee for this estimation, even when the generating model is not within the tested set, and describe an efficient implementation. Finally, we conduct some numerical experiments of unsupervised segmentation from a real dataset.

  9. Wide-field microscopic FRET imaging using simultaneous spectral unmixing of excitation and emission spectra. (United States)

    Du, Mengyan; Zhang, Lili; Xie, Shusen; Chen, Tongsheng


    Simultaneous spectral unmixing of excitation and emission spectra (ExEm unmixing) has the inherent ability to resolve donor emission, fluorescence resonance energy transfer (FRET)-sensitized acceptor emission and directly excited acceptor emission. We here develop an ExEm unmixing-based quantitative FRET measurement method (EES-FRET) independent of excitation intensity and detector parameter setting. The ratio factor (rK), predetermined using a donor-acceptor tandem construct, of total acceptor absorption to total donor absorption in excitation wavelengths used is introduced for determining the concentration ratio of acceptor to donor. We implemented EES-FRET method on a wide-field microscope to image living cells expressing tandem FRET constructs with different donor-acceptor stoichiometry.

  10. Spectrally constrained NIR tomography for breast imaging: simulations and clinical results (United States)

    Srinivasan, Subhadra; Pogue, Brian W.; Jiang, Shudong; Dehghani, Hamid; Paulsen, Keith D.


    A multi-spectral direct chromophore and scattering reconstruction for frequency domain NIR tomography has been implemented using constraints of the known molar spectra of the chromophores and a Mie theory approximation for scattering. This was tested in a tumor-simulating phantom containing an inclusion with higher hemoglobin, lower oxygenation and contrast in scatter. The recovered images were quantitatively accurate and showed substantial improvement over existing methods; and in addition, showed robust results tested for up to 5% noise in amplitude and phase measurements. When applied to a clinical subject with fibrocystic disease, the tumor was visible in hemoglobin and water, but no decrease in oxygenation was observed, making oxygen saturation, a potential diagnostic indicator.

  11. The Descent Imager/Spectral Radiometer (DISR) Experiment on the Huygens Entry Probe of Titan (United States)

    Tomasko, M. G.; Buchhauser, D.; Bushroe, M.; Dafoe, L. E.; Doose, L. R.; Eibl, A.; Fellows, C.; Farlane, E. M.; Prout, G. M.; Pringle, M. J.; Rizk, B.; See, C.; Smith, P. H.; Tsetsenekos, K.


    The payload of the Huygens Probe into the atmosphere of Titan includes the Descent Imager/Spectral Radiometer (DISR). This instrument includes an integrated package of several optical instruments built around a silicon charge coupled device (CCD) detector, a pair of linear InGaAs array detectors, and several individual silicon detectors. Fiber optics are used extensively to feed these detectors with light collected from three frame imagers, an upward and downward-looking visible spectrometer, an upward and downward looking near-infrared spectrometer, upward and downward looking violet phtotometers, a four-channel solar aerole camera, and a sun sensor that determines the azimuth and zenith angle of the sun and measures the flux in the direct solar beam at 940 nm. An onboard optical calibration system uses a small lamp and fiber optics to track the relative sensitivity of the different optical instruments relative to each other during the seven year cruise to Titan. A 20 watt lamp and collimator are used to provide spectrally continuous illumination of the surface during the last 100 m of the descent for measurements of the reflection spectrum of the surface. The instrument contains software and hardware data compressors to permit measurements of upward and downward direct and diffuse solar flux between 350 and 1700 nm in some 330 spectral bands at approximately 2 km vertical resolution from an alititude of 160 km to the surface. The solar aureole camera measures the brightness of a 6° wide strip of the sky from 25 to 75° zenith angle near and opposite the azimuth of the sun in two passbands near 500 and 935 nm using vertical and horizontal polarizers in each spectral channel at a similar vertical resolution. The downward-looking spectrometers provide the reflection spectrum of the surface at a total of some 600 locations between 850 and 1700 nm and at more than 3000 locations between 480 and 960 nm. Some 500 individual images of the surface are expected which can

  12. Imaging of hemoglobin oxygen saturation ratio in the face by spectral camera and its application to evaluate dark circles. (United States)

    Kikuchi, Kumiko; Masuda, Yuji; Hirao, Tetsuji


    Contact-type spectrophotometers have been widely used to measure skin color to determine the color values and melanin and hemoglobin contents. Recently, a spectral camera was introduced to evaluate two-dimensional color distribution. However, its application to skin color measurement has been limited. The original spectral imaging system developed for facial skin consisted of a spectral camera and an original lighting unit for uniform irradiation of the face. The distribution of skin chromophores in the face, including melanin and oxy- and deoxyhemoglobin, was calculated from the reflectance data for each pixel of the spectral images. In addition, to create a mean spectral image of the group, a face morphing technology for spectral data was proposed. Using the system, we determined the characteristics of the dark circles around the eyes and also evaluated the effects of an anti-dark circle cosmetic. This system enabled the sensitive detection of skin chromophores in the face. Melanin content increased and hemoglobin oxygen saturation ratio decreased locally in the infraorbital areas of women with dark circles compared with those of women without dark circles. In addition, we were able to detect improvement in the dark circles after 6 weeks' use of anti-dark circle cosmetic products by visualizing the distribution of the relative concentrations of melanin and hemoglobin oxygen saturation ratio. Using a spectral camera, we developed a non-contact image-processing system that was capable of capturing a wide area of the face to visualize the distribution of the relative concentrations of skin chromophores in the face. © 2013 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

  13. Spectral-domain optical coherence tomography staging and autofluorescence imaging in achromatopsia. (United States)

    Greenberg, Jonathan P; Sherman, Jerome; Zweifel, Sandrine A; Chen, Royce W S; Duncker, Tobias; Kohl, Susanne; Baumann, Britta; Wissinger, Bernd; Yannuzzi, Lawrence A; Tsang, Stephen H


    IMPORTANCE Evidence is mounting that achromatopsia is a progressive retinal degeneration, and treatments for this condition are on the horizon. OBJECTIVES To categorize achromatopsia into clinically identifiable stages using spectral-domain optical coherence tomography and to describe fundus autofluorescence imaging in this condition. DESIGN, SETTING, AND PARTICIPANTS A prospective observational study was performed between 2010 and 2012 at the Edward S. Harkness Eye Institute, New York-Presbyterian Hospital. Participants included 17 patients (aged 10-62 years) with full-field electroretinography-confirmed achromatopsia. MAIN OUTCOMES AND MEASURES Spectral-domain optical coherence tomography features and staging system, fundus autofluorescence and near-infrared reflectance features and their correlation to optical coherence tomography, and genetic mutations served as the outcomes and measures. RESULTS Achromatopsia was categorized into 5 stages on spectral-domain optical coherence tomography: stage 1 (2 patients [12%]), intact outer retina; stage 2 (2 patients [12%]), inner segment ellipsoid line disruption; stage 3 (5 patients [29%]), presence of an optically empty space; stage 4 (5 patients [29%]), optically empty space with partial retinal pigment epithelium disruption; and stage 5 (3 patients [18%]), complete retinal pigment epithelium disruption and/or loss of the outer nuclear layer. Stage 1 patients showed isolated hyperreflectivity of the external limiting membrane in the fovea, and the external limiting membrane was hyperreflective above each optically empty space. On near infrared reflectance imaging, the fovea was normal, hyporeflective, or showed both hyporeflective and hyperreflective features. All patients demonstrated autofluorescence abnormalities in the fovea and/or parafovea: 9 participants (53%) had reduced or absent autofluorescence surrounded by increased autofluorescence, 4 individuals (24%) showed only reduced or absent autofluorescence, 3

  14. Spectral-Domain Optical Coherence Tomography Staging and Autofluorescence Imaging in Achromatopsia (United States)

    Greenberg, Jonathan P.; Sherman, Jerome; Zweifel, Sandrine A.; Chen, Royce W. S.; Duncker, Tobias; Kohl, Susanne; Baumann, Britta; Wissinger, Bernd; Yannuzzi, Lawrence A.; Tsang, Stephen H.


    Importance Evidence is mounting that achromatopsia is a progressive retinal degeneration, and treatments for this condition are on the horizon. Objectives To categorize achromatopsia into clinically identifiable stages using spectral-domain optical coherence tomography and to describe fundus autofluorescence imaging in this condition. Design, Setting, and Participants A prospective observational study was performed between 2010 and 2012 at the Edward S. Harkness Eye Institute, New York-Presbyterian Hospital. Participants included 17 patients (aged 10-62 years) with full-field electroretinography-confirmed achromatopsia. Main outcomes and Measures Spectral-domain optical coherence tomography features and staging system, fundus autofluorescence and near-infrared reflectance features and their correlation to optical coherence tomography, and genetic mutations served as the outcomes and measures. Results Achromatopsia was categorized into 5 stages on spectral-domain optical coherence tomography: stage 1 (2 patients [12%]), intact outer retina; stage 2 (2 patients [12%]), inner segment ellipsoid line disruption; stage 3 (5 patients [29%]), presence of an optically empty space; stage 4 (5 patients [29%]), optically empty space with partial retinal pigment epithelium disruption; and stage 5 (3 patients [18%]), complete retinal pigment epithelium disruption and/or loss of the outer nuclear layer. Stage 1 patients showed isolated hyperreflectivity of the external limiting membrane in the fovea, and the external limiting membrane was hyperreflective above each optically empty space. On near infrared reflectance imaging, the fovea was normal, hyporeflective, or showed both hyporeflective and hyperreflective features. All patients demonstrated autofluorescence abnormalities in the fovea and/or parafovea: 9 participants (53%) had reduced or absent autofluorescence surrounded by increased autofluorescence, 4 individuals (24%) showed only reduced or absent autofluorescence, 3

  15. In Vivo Phenotyping of Tumor Metabolism in a Canine Cancer Patient with Simultaneous (18)F-FDG-PET and Hyperpolarized (13)C-Pyruvate Magnetic Resonance Spectroscopic Imaging (hyperPET): Mismatch Demonstrates that FDG may not Always Reflect the Warburg Effect

    DEFF Research Database (Denmark)

    Gutte, Henrik; Hansen, Adam E; Larsen, Majbrit M E


    In this communication the mismatch between simultaneous (18)F-FDG-PET and a (13)C-lactate imaging (hyperPET) in a biopsy verified squamous cell carcinoma in the right tonsil of a canine cancer patient is shown. The results demonstrate that (18)F-FDG-PET may not always reflect the Warburg effect i...

  16. Primer on Use of Multi-Spectral and Infra Red Imaging for On-Site Inspections

    Energy Technology Data Exchange (ETDEWEB)

    Henderson, J R


    The purpose of an On-Site Inspection (OSI) is to determine whether a nuclear explosion has occurred in violation of the Comprehensive Nuclear Test Ban Treaty (CTBT), and to gather information which might assist in identifying the violator (CTBT, Article IV, Paragraph 35) Multi-Spectral and Infra Red Imaging (MSIR) is allowed by the treaty to detect observables which might help reduce the search area and thus expedite an OSI and make it more effective. MSIR is permitted from airborne measurements, and at and below the surface to search for anomalies and artifacts (CTBT, Protocol, Part II, Paragraph 69b). The three broad types of anomalies and artifacts MSIR is expected to be capable of observing are surface disturbances (disturbed earth, plant stress or anomalous surface materials), human artifacts (man-made roads, buildings and features), and thermal anomalies. The purpose of this Primer is to provide technical information on MSIR relevant to its use for OSI. It is expected that this information may be used for general background information, to inform decisions about the selection and testing of MSIR equipment, to develop operational guidance for MSIR use during an OSI, and to support the development of a training program for OSI Inspectors. References are provided so readers can pursue a topic in more detail than the summary information provided here. The following chapters will provide more information on how MSIR can support an OSI (Section 2), a short summary what Multi-Spectral Imaging and Infra Red Imaging is (Section 3), guidance from the CTBT regarding the use of MSIR (Section 4), and a description of several nuclear explosion scenarios (Section 5) and consequent observables (Section 6). The remaining sections focus on practical aspects of using MSIR for an OSI, such as specification and selection of MSIR equipment, operational considerations for deployment of MISR equipment from an aircraft, and the conduct of field exercises to mature MSIR for an OSI

  17. In vivo imaging of the spectral line broadening of the human lung in a single breathhold. (United States)

    Carinci, Flavio; Meyer, Cord; Breuer, Felix A; Jakob, Peter M


    To present a technique, which allows for the in vivo quantification of the spectral line broadening of the human lung in a single breathhold. The line broadening is an interesting parameter of the lung because it can provide information about important lung properties, namely: inflation and oxygen uptake. The proposed technique integrates the asymmetric spin-echo (ASE) approach, which is commonly used to quantify the line broadening, with a single shot turbo spin-echo pulse sequence with half-Fourier acquisition (HASTE), to reduce the acquisition times. Imaging experiments were performed at 1.5 Tesla on 14 healthy volunteers, using a ASE-prepared HASTE sequence. The line broadening was quantified using a two-points method. Data were acquired at different breathing states: functional residual capacity (FRC) and total lung capacity (TLC), and with different breathing gases: room-air and pure-oxygen. Image acquisition was accomplished within a single breathhold of approximately 15 s duration. The violation of the Carr-Purcell-Meiboom-Gill conditions, deriving from inhomogeneities of the static magnetic field, was overcome by means of radiofrequency-phase cycling and generalized autocalibrating partially parallel acquisitions (GRAPPA) reconstruction. Significant increase of the line broadening was observed with both lung inflation and oxygen concentration (P lung parenchyma at different breathing states (1.48 ± 0.29 ppm at FRC and 1.95 ± 0.43 ppm at TLC) are in agreement with previous reports and show excellent reproducibility, with a coefficient of variation lung in vivo. Image acquisition can be accomplished in a single breathhold, which could be suitable for clinical applications on patients with lung diseases. J. Magn. Reson. Imaging 2016;44:745-757. © 2016 International Society for Magnetic Resonance in Medicine.

  18. Hyper-Kamiokande and Astrophysics (United States)

    Yano, Takatomi; Hyper-Kamiokande proto Collaboration


    Hyper-Kamiokande (Hyper-K) is a proposed next generation underground large water Cherenkov detector. Recently a new detector design of Hyper-K is presented, as the two cylindrical pure water tanks. In the new design, each detector is surrounded by 40,000 newly developed photos sensors and provids the fiducial volume of 0.187 Mt. In total, the fiducial volume will be 0.37 Mt. Hyper-K will play the important role in several sciene of the next neutrino physics frontier, even in the neutrino astrophysics. The detection with large statistics of astrophysical neutrons, i.e., solar neutrino, supernova burst neutrino and supernova relic neutrino, will be remarkable information for both of particle physics and astrophysics.

  19. Hierarchies of hyper-AFLs

    NARCIS (Netherlands)

    Engelfriet, Joost


    For a full semi-AFL K, B(K) is defined as the family of languages generated by all K-extended basic macro grammars, while H(K) B(K) is the smallest full hyper-AFL containing K; a full basic-AFL is a full AFL K such that B(K) = K (hence every full basic-AFL is a full hyper-AFL). For any full semi-AFL

  20. Simulated radiance profiles for automating the interpretation of airborne passive multi-spectral infrared images. (United States)

    Sulub, Yusuf; Small, Gary W


    Methodology is developed for simulating the radiance profiles acquired from airborne passive multispectral infrared imaging measurements of ground sources of volatile organic compounds (VOCs). The simulation model allows the superposition of pure-component laboratory spectra of VOCs onto spectral backgrounds that simulate those acquired during field measurements conducted with a downward-looking infrared line scanner mounted on an aircraft flying at an altitude of 2000-3000 ft (approximately 600-900 m). Wavelength selectivity in the line scanner is accomplished through the use of a multichannel Hg:Cd:Te detector with up to 16 integrated optical filters. These filters allow the detection of absorption and emission signatures of VOCs superimposed on the upwelling infrared background radiance within the instrumental field of view (FOV). By combining simulated radiance profiles containing analyte signatures with field-collected background signatures, supervised pattern recognition methods can be employed to train automated classifiers for use in detecting the signatures of VOCs during field measurements. The targeted application for this methodology is the use of the imaging system to detect releases of VOCs during emergency response scenarios. In the work described here, the simulation model is combined with piecewise linear discriminant analysis to build automated classifiers for detecting ethanol and methanol. Field data collected during controlled releases of ethanol, as well as during a methanol release from an industrial facility, are used to evaluate the methodology.

  1. Space station image captures a red tide ciliate bloom at high spectral and spatial resolution. (United States)

    Dierssen, Heidi; McManus, George B; Chlus, Adam; Qiu, Dajun; Gao, Bo-Cai; Lin, Senjie


    Mesodinium rubrum is a globally distributed nontoxic ciliate that is known to produce intense red-colored blooms using enslaved chloroplasts from its algal prey. Although frequent enough to have been observed by Darwin, blooms of M. rubrum are notoriously difficult to quantify because M. rubrum can aggregate into massive clouds of rusty-red water in a very short time due to its high growth rates and rapid swimming behavior and can disaggregate just as quickly by vertical or horizontal dispersion. A September 2012 hyperspectral image from the Hyperspectral Imager for the Coastal Ocean sensor aboard the International Space Station captured a dense red tide of M. rubrum (10(6) cells per liter) in surface waters of western Long Island Sound. Genetic data confirmed the identity of the chloroplast as a cryptophyte that was actively photosynthesizing. Microscopy indicated extremely high abundance of its yellow fluorescing signature pigment phycoerythrin. Spectral absorption and fluorescence features were related to ancillary photosynthetic pigments unique to this organism that cannot be observed with traditional satellites. Cell abundance was estimated at a resolution of 100 m using an algorithm based on the distinctive yellow fluorescence of phycoerythrin. Future development of hyperspectral satellites will allow for better enumeration of bloom-forming coastal plankton, the associated physical mechanisms, and contributions to marine productivity.

  2. In vivo imaging of raptor retina with ultra high resolution spectral domain optical coherence tomography (United States)

    Ruggeri, Marco; Major, James C., Jr.; McKeown, Craig; Wehbe, Hassan; Jiao, Shuliang; Puliafito, Carmen A.


    Among birds, raptors are well known for their exceptional eyesight, which is partly due to the unique structure of their retina. Because the raptor retina is the most advanced of any animal species, in vivo examination of its structure would be remarkable. Furthermore, a noticeable percentage of traumatic ocular injuries are identified in birds of prey presented to rehabilitation facilities. Injuries affecting the posterior segment have been considered as a major impact on raptor vision. Hence, in vivo examination of the structure of the posterior segment of the raptors would be helpful for the diagnosis of traumatized birds. The purpose of this study is to demonstrate the application of ultrahigh-resolution Spectral Domain Optical Coherence Tomography (SD-OCT) for non contact in vivo imaging of the retina of birds of prey, which to the best of our knowledge has never been attempted. For the first time we present high quality OCT images of the retina of two species of bird of prey, one diurnal hawk and one nocturnal owl.

  3. Image Segmentation Based on Constrained Spectral Variance Difference and Edge Penalty

    Directory of Open Access Journals (Sweden)

    Bo Chen


    Full Text Available Segmentation, which is usually the first step in object-based image analysis (OBIA, greatly influences the quality of final OBIA results. In many existing multi-scale segmentation algorithms, a common problem is that under-segmentation and over-segmentation always coexist at any scale. To address this issue, we propose a new method that integrates the newly developed constrained spectral variance difference (CSVD and the edge penalty (EP. First, initial segments are produced by a fast scan. Second, the generated segments are merged via a global mutual best-fitting strategy using the CSVD and EP as merging criteria. Finally, very small objects are merged with their nearest neighbors to eliminate the remaining noise. A series of experiments based on three sets of remote sensing images, each with different spatial resolutions, were conducted to evaluate the effectiveness of the proposed method. Both visual and quantitative assessments were performed, and the results show that large objects were better preserved as integral entities while small objects were also still effectively delineated. The results were also found to be superior to those from eCongnition’s multi-scale segmentation.

  4. Mapping Forest Health Using Spectral and Textural Information Extracted from SPOT-5 Satellite Images

    Directory of Open Access Journals (Sweden)

    Jinghui Meng


    Full Text Available Forest health is an important variable that we need to monitor for forest management decision making. However, forest health is difficult to assess and monitor based merely on forest field surveys. In the present study, we first derived a comprehensive forest health indicator using 15 forest stand attributes extracted from forest inventory plots. Second, Pearson’s correlation analysis was performed to investigate the relationship between the forest health indicator and the spectral and textural measures extracted from SPOT-5 images. Third, all-subsets regression was performed to build the predictive model by including the statistically significant image-derived measures as independent variables. Finally, the developed model was evaluated using the coefficient of determination (R2 and the root mean square error (RMSE. Additionally, the produced model was further validated for its performance using the leave-one-out cross-validation approach. The results indicated that our produced model could provide reliable, fast and economic means to assess and monitor forest health. A thematic map of forest health was finally produced to support forest health management.

  5. Review of spectral domain enhanced depth imaging optical coherence tomography of tumors of the choroid

    Directory of Open Access Journals (Sweden)

    Carol L Shields


    Full Text Available Background: Spectral domain enhanced depth imaging optical coherence tomography (EDI-OCT can provide anatomic localization of intraocular tumors. Aims: The aim was to identify topographical and intrinsic patterns of choroidal tumors on EDI-OCT. Settings and Design: Retrospective review. Materials and Methods: Analysis of published reports and personal observations using office based EDI-OCT. Results: Using EDI-OCT, choroidal nevus displayed a smooth, dome-shaped topography with overlying retinal pigment epithelium alterations, drusen, and occasional subretinal cleft demonstrating photoreceptor loss. Small choroidal melanoma showed smooth, moderately dome-shaped topography, commonly with overlying shallow subretinal fluid that often depicted "shaggy" photoreceptors. Choroidal metastasis showed a minimally "lumpy, bumpy" surface topography and with overlying subretinal fluid and shaggy photoreceptors. Choroidal hemangioma showed a smooth, dome-shaped topography, with expansion of the affected small, medium, and large choroidal vessels. Choroidal lymphoma showed varying topography with increasing tumor thickness as "flat, rippled, or undulating (seasick" surface. Choroidal osteoma displayed a smooth undulating surface with visible intralesional horizontal lines suggestive of bone lamellae and occasional horizontal and vertical tubules with intralesional "spongy" flecks. Choroidal melanocytosis appeared as uniformly thickened choroid with increased stromal density surrounding the normal choroidal vascular structures. Conclusions: Enhanced depth imaging-OCT can depict characteristic patterns that are suggestive of various choroidal tumors.

  6. Radiometric and spectral calibrations of the Geostationary Imaging Fourier Transform Spectrometer (GIFTS) using principle component analysis (United States)

    Tian, Jialin; Smith, William L.; Gazarik, Michael J.


    The ultimate remote sensing benefits of the high resolution Infrared radiance spectrometers will be realized with their geostationary satellite implementation in the form of imaging spectrometers. This will enable dynamic features of the atmosphere's thermodynamic fields and pollutant and greenhouse gas constituents to be observed for revolutionary improvements in weather forecasts and more accurate air quality and climate predictions. As an important step toward realizing this application objective, the Geostationary Imaging Fourier Transform Spectrometer (GIFTS) Engineering Demonstration Unit (EDU) was successfully developed under the NASA New Millennium Program, 2000-2006. The GIFTS-EDU instrument employs three focal plane arrays (FPAs), which gather measurements across the long-wave IR (LWIR), short/mid-wave IR (SMWIR), and visible spectral bands. The raw GIFTS interferogram measurements are radiometrically and spectrally calibrated to produce radiance spectra, which are further processed to obtain atmospheric profiles via retrieval algorithms. The radiometric calibration is achieved using internal blackbody calibration references at ambient (260 K) and hot (286 K) temperatures. The absolute radiometric performance of the instrument is affected by several factors including the FPA off-axis effect, detector/readout electronics induced nonlinearity distortions, and fore-optics offsets. The GIFTS-EDU, being the very first imaging spectrometer to use ultra-high speed electronics to readout its large area format focal plane array detectors, operating at wavelengths as large as 15 microns, possessed non-linearity's not easily removable in the initial calibration process. In this paper, we introduce a refined calibration technique that utilizes Principle Component (PC) analysis to compensate for instrument distortions and artifacts remaining after the initial radiometric calibration process, thus, further enhance the absolute calibration accuracy. This method is

  7. [Hyper-reactive malarial splenomegaly]. (United States)

    Maazoun, F; Deschamps, O; Barros-Kogel, E; Ngwem, E; Fauchet, N; Buffet, P; Froissart, A


    Hyper-reactive malarial splenomegaly is a rare and severe form of chronic malaria. This condition is a common cause of splenomegaly in endemic areas. The pathophysiology of hyper-reactive malarial splenomegaly involves an intense immune reaction (predominantly B cell-driven) to repeated/chronic infections with Plasmodium sp. The diagnosis may be difficult, due to a poorly specific clinical presentation (splenomegaly, fatigue, cytopenias), a long delay between residence in a malaria-endemic area and onset of symptoms, and a frequent absence of parasites on conventional thin and thick blood smears. A strongly contributive laboratory parameter is the presence of high levels of total immunoglobulin M. When the diagnostic of hyper-reactive malarial splenomegaly is considered, search for anti-Plasmodium antibodies and Plasmodium nucleic acids (genus and species) by PCR is useful. Diagnosis of hyper-reactive malarial splenomegaly relies on the simultaneous presence of epidemiological, clinical, biological and follow-up findings. Regression of both splenomegaly and hypersplenism following antimalarial therapy allows the differential diagnosis with splenic lymphoma, a common complication of hyper-reactive malarial splenomegaly. Although rare in Western countries, hyper-reactive malarial splenomegaly deserves increased medical awareness to reduce the incidence of incorrect diagnosis, to prevent progression to splenic lymphoma and to avoid splenectomy. Copyright © 2015 Société nationale française de médecine interne (SNFMI). Published by Elsevier SAS. All rights reserved.

  8. Quantifying potential reduction in contrast dose with monoenergetic images synthesized from dual-layer detector spectral CT. (United States)

    Tsang, Derek S; Merchant, Thomas E; Merchant, Sophie E; Smith, Hanna; Yagil, Yoad; Hua, Chia-Ho


    To estimate the potential dose reduction in iodinated contrast when interpreting monoenergetic images from spectral CT. 51 paediatric patients received contrast-enhanced CT simulation for radiation therapy using a single-source, dual-layer detector spectral CT. The contrast-to-noise ratios (CNRs) of blood vessels were measured relative to surrounding soft tissue. CNRs on monoenergetic 40-70 keV images were compared with polychromatic 120 kVp images. To compare with in vivo results, a phantom with iodine inserts (2-20 mg ml -1 concentration) was scanned and CNRs were calculated relative to water background. Monoenergetic keV and body site had significant effects on CNR ratio (p images, respectively. Image noise was highest at 40 keV and lowest at 70 keV. Phantom measurements indicated that the same CNR as 120 kVp images can be achieved with a 4.0-fold lower iodine concentration on 40 keV images and 2.5-fold lower on 50 keV images. 50 keV monoenergetic images provided the best balance of improved CNR on all studies (mean 2.4-fold increase in vivo) for enhancing vessels vs image noise. A 50% reduction in contrast dose on a 50 keV image should maintain comparable or better CNR as compared with polychromatic CT in over 80% of CT studies. Advances in knowledge: Use of a novel, single-source, dual-layer detector spectral CT scanner to improve visualization of contrast-enhanced blood vessels will reduce the amount of iodinated contrast required for radiation oncology treatment planning.

  9. Parallel implementation of linear and nonlinear spectral unmixing of remotely sensed hyperspectral images (United States)

    Plaza, Antonio; Plaza, Javier


    Hyperspectral unmixing is a very important task for remotely sensed hyperspectral data exploitation. It addresses the (possibly) mixed nature of pixels collected by instruments for Earth observation, which are due to several phenomena including limited spatial resolution, presence of mixing effects at different scales, etc. Spectral unmixing involves the separation of a mixed pixel spectrum into its pure component spectra (called endmembers) and the estimation of the proportion (abundance) of endmember in the pixel. Two models have been widely used in the literature in order to address the mixture problem in hyperspectral data. The linear model assumes that the endmember substances are sitting side-by-side within the field of view of the imaging instrument. On the other hand, the nonlinear mixture model assumes nonlinear interactions between endmember substances. Both techniques can be computationally expensive, in particular, for high-dimensional hyperspectral data sets. In this paper, we develop and compare parallel implementations of linear and nonlinear unmixing techniques for remotely sensed hyperspectral data. For the linear model, we adopt a parallel unsupervised processing chain made up of two steps: i) identification of pure spectral materials or endmembers, and ii) estimation of the abundance of each endmember in each pixel of the scene. For the nonlinear model, we adopt a supervised procedure based on the training of a parallel multi-layer perceptron neural network using intelligently selected training samples also derived in parallel fashion. The compared techniques are experimentally validated using hyperspectral data collected at different altitudes over a so-called Dehesa (semi-arid environment) in Extremadura, Spain, and evaluated in terms of computational performance using high performance computing systems such as commodity Beowulf clusters.

  10. A novel fluorescence imaging technique combining deconvolution microscopy and spectral analysis for quantitative detection of opportunistic pathogens

    Energy Technology Data Exchange (ETDEWEB)

    Le Puil, Michael [Florida Gulf Coast University; Biggerstaff, John P. [University of Tennessee, Knoxville (UTK); Weidow, B. [University of Tennessee, Knoxville (UTK); Price, Jeffery R [ORNL; Naser, S. [University of Central Florida; White, D.C. [University of Tennessee, Knoxville (UTK); Alberte, R. [Florida Gulf Coast University


    A novel fluorescence imaging technique based on deconvolution microscopy and spectral analysis is presented here as an alternative to confocal laser scanning microscopy. It allowed rapid, specific and simultaneous identification of five major opportunistic pathogens, relevant for public health, in suspension and provided quantitative results.

  11. High-sensitivity hyperspectral imager for biomedical video diagnostic applications (United States)

    Leitner, Raimund; Arnold, Thomas; De Biasio, Martin


    Video endoscopy allows physicians to visually inspect inner regions of the human body using a camera and only minimal invasive optical instruments. It has become an every-day routine in clinics all over the world. Recently a technological shift was done to increase the resolution from PAL/NTSC to HDTV. But, despite a vast literature on invivo and in-vitro experiments with multi-spectral point and imaging instruments that suggest that a wealth of information for diagnostic overlays is available in the visible spectrum, the technological evolution from colour to hyper-spectral video endoscopy is overdue. There were two approaches (NBI, OBI) that tried to increase the contrast for a better visualisation by using more than three wavelengths. But controversial discussions about the real benefit of a contrast enhancement alone, motivated a more comprehensive approach using the entire spectrum and pattern recognition algorithms. Up to now the hyper-spectral equipment was too slow to acquire a multi-spectral image stack at reasonable video rates rendering video endoscopy applications impossible. Recently, the availability of fast and versatile tunable filters with switching times below 50 microseconds made an instrumentation for hyper-spectral video endoscopes feasible. This paper describes a demonstrator for hyper-spectral video endoscopy and the results of clinical measurements using this demonstrator for measurements after otolaryngoscopic investigations and thorax surgeries. The application investigated here is the detection of dysplastic tissue, although hyper-spectral video endoscopy is of course not limited to cancer detection. Other applications are the detection of dysplastic tissue or polyps in the colon or the gastrointestinal tract.

  12. A novel spectral imaging system for quantitative analysis of hypertrophic scar (United States)

    Ghassemi, Pejhman; Shupp, Jeffrey W.; Moffatt, Lauren T.; Ramella-Roman, Jessica C.


    Scarring can lead to significant cosmetic, psychosocial, and functional consequences in patients with hypertrophic scars from burn and trauma injuries. Therefore, quantitative assessment of scar is needed in clinical diagnosis and treatment. The Vancouver Scar Scale (VSS), the accepted clinical scar assessment tool, was introduced in the nineties and relies only on the physician subjective evaluation of skin pliability, height, vascularity, and pigmentation. To date, no entirely objective method has been available for scar assessment. So, there is a continued need for better techniques to monitor patients with scars. We introduce a new spectral imaging system combining out-of-plane Stokes polarimetry, Spatial Frequency Domain Imaging (SFDI), and three-dimensional (3D) reconstruction. The main idea behind this system is to estimate hemoglobin and melanin contents of scar using SFDI technique, roughness and directional anisotropy features with Stokes polarimetry, and height and general shape with 3D reconstruction. Our proposed tool has several advantages compared to current methodologies. First and foremost, it is non-contact and non-invasive and thus can be used at any stage in wound healing without causing harm to the patient. Secondarily, the height, pigmentation, and hemoglobin assessments are co-registered and are based on imaging and not point measurement, allowing for more meaningful interpretation of the data. Finally, the algorithms used in the data analysis are physics based which will be very beneficial in the standardization of the technique. A swine model has also been developed for hypertrophic scarring and an ongoing pre-clinical evaluation of the technique is being conducted.

  13. Observation of Switchable Photoresponse of a Monolayer WSe 2 –MoS 2 Lateral Heterostructure via Photocurrent Spectral Atomic Force Microscopic Imaging

    KAUST Repository

    Son, Youngwoo


    In the pursuit of two-dimensional (2D) materials beyond graphene, enormous advances have been made in exploring the exciting and useful properties of transition metal dichalcogenides (TMDCs), such as a permanent band gap in the visible range and the transition from indirect to direct band gap due to 2D quantum confinement, and their potential for a wide range of device applications. In particular, recent success in the synthesis of seamless monolayer lateral heterostructures of different TMDCs via chemical vapor deposition methods has provided an effective solution to producing an in-plane p-n junction, which is a critical component in electronic and optoelectronic device applications. However, spatial variation of the electronic and optoelectonic properties of the synthesized heterojunction crystals throughout the homogeneous as well as the lateral junction region and the charge carrier transport behavior at their nanoscale junctions with metals remain unaddressed. In this work, we use photocurrent spectral atomic force microscopy to image the current and photocurrent generated between a biased PtIr tip and a monolayer WSe2-MoS2 lateral heterostructure. Current measurements in the dark in both forward and reverse bias reveal an opposite characteristic diode behavior for WSe2 and MoS2, owing to the formation of a Schottky barrier of dissimilar properties. Notably, by changing the polarity and magnitude of the tip voltage applied, pixels that show the photoresponse of the heterostructure are observed to be selectively switched on and off, allowing for the realization of a hyper-resolution array of the switchable photodiode pixels. This experimental approach has significant implications toward the development of novel optoelectronic technologies for regioselective photodetection and imaging at nanoscale resolutions. Comparative 2D Fourier analysis of physical height and current images shows high spatial frequency variations in substrate/MoS2 (or WSe2) contact that

  14. Recognition of endoscopic diagnosis in differentiated-type early gastric cancer by flexible spectral imaging color enhancement with indigo carmine. (United States)

    Dohi, O; Yagi, N; Wada, T; Yamada, N; Bito, N; Yamada, S; Gen, Y; Yoshida, N; Uchiyama, K; Ishikawa, T; Takagi, T; Handa, O; Konishi, H; Wakabayashi, N; Kokura, S; Naito, Y; Yoshikawa, T


    To evaluate the usefulness of flexible spectral imaging color enhancement with indigo carmine (I-FICE) in early gastric cancer (EGC) demarcation. The study participants were 29 patients with differentiated-type EGC. The endoscope was fixed and images of the same area of EGC demarcations in each lesion were obtained using four different methods (WLE, flexible spectral imaging color enhancement (FICE), CE, and I-FICE). FICE mode at R 550 nm (Gain: 2), G 500 nm (Gain: 4), and B 470 nm (Gain: 4) was used. Four endoscopists ranked the images obtained by each method on the basis of the ease of recognition of demarcation using a 4-point system. We calculated the standard deviation of pixel values based on L*, a*, and b* color spaces in the demarcation region (Lab-SD score). The median ranking score for I-FICE images was significantly higher than that obtained from the other methods. Further, the average Lab-SD score was significantly higher for I-FICE images than for images obtained by the other methods. There was a good correlation between the ranking score and Lab-SD score. EGC demarcations were most easily recognized both subjectively and objectively using I-FICE image, followed by CE, FICE and WLE images. Copyright © 2012 S. Karger AG, Basel.

  15. Spectral Unmixing of Forest Crown Components at Close Range, Airborne and Simulated Sentinel-2 and EnMAP Spectral Imaging Scale

    Directory of Open Access Journals (Sweden)

    Anne Clasen


    Full Text Available Forest biochemical and biophysical variables and their spatial and temporal distribution are essential inputs to process-orientated ecosystem models. To provide this information, imaging spectroscopy appears to be a promising tool. In this context, the present study investigates the potential of spectral unmixing to derive sub-pixel crown component fractions in a temperate deciduous forest ecosystem. However, the high proportion of foliage in this complex vegetation structure leads to the problem of saturation effects, when applying broadband vegetation indices. This study illustrates that multiple endmember spectral mixture analysis (MESMA can contribute to overcoming this challenge. Reference fractional abundances, as well as spectral measurements of the canopy components, could be precisely determined from a crane measurement platform situated in a deciduous forest in North-East Germany. In contrast to most other studies, which only use leaf and soil endmembers, this experimental setup allowed for the inclusion of a bark endmember for the unmixing of components within the canopy. This study demonstrates that the inclusion of additional endmembers markedly improves the accuracy. A mean absolute error of 7.9% could be achieved for the fractional occurrence of the leaf endmember and 5.9% for the bark endmember. In order to evaluate the results of this field-based study for airborne and satellite-based remote sensing applications, a transfer to Airborne Imaging Spectrometer for Applications (AISA and simulated Environmental Mapping and Analysis Program (EnMAP and Sentinel-2 imagery was carried out. All sensors were capable of unmixing crown components with a mean absolute error ranging between 3% and 21%.

  16. Differential diagnosis of pancreatic serous oligocystic adenoma and mucinous cystic neoplasm with spectral CT imaging: initial results. (United States)

    Lin, X-Z; Wu, Z-Y; Li, W-X; Zhang, J; Xu, X-Q; Chen, K-M; Yan, F-H


    To investigate the imaging characteristics of pancreatic serous oligocystic adenoma (SOA) and mucinous cystic neoplasms (MCNs) using spectral computed tomography (CT) and to evaluate whether quantitative information derived from spectral imaging can improve the differential diagnosis of these diseases. From February 2010 to June 2013, 44 patients (24 SOAs and 20 MCNs) who underwent spectral CT imaging were included in the study. Conventional characteristics and quantitative parameters were compared between the two disease groups. Logistic regression was used for multiparametric analysis. The receiver-operating characteristic curve was used to evaluate the diagnostic performance of single parameter and multiparametric analysis. Two radiologists diagnosed the diseases blinded and independently, without and with the information of the statistical analysis. Tumour location, contour, size, and monochromatic CT values at 40 keV to 70 keV, iodine concentration, and effective atomic number (effective-Z) in the late arterial phase were the independent factors correlated with category. Multiparametric analysis with logistic regression showed that tumour size, location, and contour were the most effective variations, and obtained an area under the ROC curve (AUC) of 0.934. With the knowledge of statistical analysis, the accuracy of the first reader increased from 70.5% to 86.4%, and the accuracy of the second reader increased from 81.8% to 90.9%. Although CT spectral imaging provided additional information and multiparametric analysis obtained better performance than single-parameter analysis in differentiating MCNs from SOAs, multiparametric analysis with the combination of quantitative parameters derived from CT spectral imaging did not improve the diagnostic performance. Tumour size, location, and contour played an important role in differentiating MCNs from SOAs. Copyright © 2014 The Royal College of Radiologists. Published by Elsevier Ltd. All rights reserved.

  17. Combining Spectral Data and a DSM from UAS-Images for Improved Classification of Non-Submerged Aquatic Vegetation

    Directory of Open Access Journals (Sweden)

    Eva Husson


    Full Text Available Monitoring of aquatic vegetation is an important component in the assessment of freshwater ecosystems. Remote sensing with unmanned aircraft systems (UASs can provide sub-decimetre-resolution aerial images and is a useful tool for detailed vegetation mapping. In a previous study, non-submerged aquatic vegetation was successfully mapped using automated classification of spectral and textural features from a true-colour UAS-orthoimage with 5-cm pixels. In the present study, height data from a digital surface model (DSM created from overlapping UAS-images has been incorporated together with the spectral and textural features from the UAS-orthoimage to test if classification accuracy can be improved further. We studied two levels of thematic detail: (a Growth forms including the classes of water, nymphaeid, and helophyte; and (b dominant taxa including seven vegetation classes. We hypothesized that the incorporation of height data together with spectral and textural features would increase classification accuracy as compared to using spectral and textural features alone, at both levels of thematic detail. We tested our hypothesis at five test sites (100 m × 100 m each with varying vegetation complexity and image quality using automated object-based image analysis in combination with Random Forest classification. Overall accuracy at each of the five test sites ranged from 78% to 87% at the growth-form level and from 66% to 85% at the dominant-taxon level. In comparison to using spectral and textural features alone, the inclusion of height data increased the overall accuracy significantly by 4%–21% for growth-forms and 3%–30% for dominant taxa. The biggest improvement gained by adding height data was observed at the test site with the most complex vegetation. Height data derived from UAS-images has a large potential to efficiently increase the accuracy of automated classification of non-submerged aquatic vegetation, indicating good possibilities

  18. Photoreceptor outer segment layer thickness measured manually on images from spectral domain optical coherence tomography in healthy volunteers. (United States)

    Özkaya, A; Alkin, Z; Karatas, G; Karakucuk, Y; Perente, I; Taylan Yazici, A; Demirok, A


    To investigate photoreceptor outer segment layer thickness measured with a manual technique on images from spectral domain optical coherence tomography (OCT) in healthy volunteers. In 60 eyes of 30 healthy volunteers, a spectral domain OCT device (Spectralis, Heidelberg Engineering) was used to obtain cross-sectional images of the retina. For each volunteer, two images of each eye were obtained in one sitting. Images were digitally enlarged and the manual calipers feature of the device's software was used to measure, at the lowest point in the fovea, the thickness of the photoreceptor outer segment layer. All measurements were performed by the same investigator. Repeatability was evaluated with the Bland-Altman repeatability coefficient, and intersubject variability with Pearson's coefficient of variation. The mean values of measurements across all the volunteers were as follows: right eye first image 38.1 micrometers, right eye second image 37.9 micrometers, left eye first image 37.9 micrometers, left eye second image 37.9 micrometers. The repeatability coefficient, i.e. the difference between repeated measurements which would be exceeded in only 5% of cases, was 1.6 micrometers. Coefficients of variation for the right eye were 3.4% for the first images and 3.4% for the second images, and for the left eye they were 3.2 and 4.0% respectively. With a manual method based on spectral domain OCT, the thickness of the photoreceptor outer segment layer at the central fovea can be measured within a useful range of repeatability and appears to be relatively constant across healthy volunteers. Copyright © 2014 Elsevier Masson SAS. All rights reserved.

  19. Increased detection of precancerous cervical lesions with adjunctive dynamic spectral imaging

    Directory of Open Access Journals (Sweden)

    DeNardis SA


    Full Text Available Sara A DeNardis,1 Philip T Lavin,2 Jeff Livingston,3 William R Salter,4 Nanette James-Patrick,5 Emmanouil Papagiannakis,6 Christopher G Olson,7 Lori Weinberg81Department of Obstetrics/Gynecology, University of Central Florida, Orlando, FL, USA; 2Boston Biostatistics Research Foundation, Framingham, MA, USA; 3MacArthur OB/GYN, Irving, TX, USA; 4Advanced ObGyn Associates, Richardson, TX, USA; 5Southwest Women’s Healthcare Associates, Olympia Fields, IL, USA; 6DYSIS Medical, Edinburgh, UK; 7Women’s Center for Health, Naperville, IL, USA; 8Department of Obstetrics/Gynecology, Advocate Illinois Masonic Medical Center, Chicago, IL, USAObjective: To validate, in US community-based colposcopy clinics, previous reports of increased detection of high-grade cervical intraepithelial neoplasia (CIN2+ with biopsies selected using dynamic spectral imaging (DSI mapping after standard colposcopy.Study design: Cross-sectional observational study of 26 colposcopists across nine clinics recruiting consecutive colposcopy patients. Standard assessment with biopsy selections was completed before seeing the DSI map which was subsequently interpreted and used for additional biopsies per clinical judgment. Primary measure was the number of women with CIN2+ detected by DSI-assisted biopsies, over those detected by standard colposcopy biopsies.Results: A total of 887 women were recruited. After exclusions, 881 women and 1,189 biopsies were analyzed. Standard biopsy detected 78 women with CIN2+ and DSI-assisted biopsies another 34, increasing the detection rate from 8.85% to 12.71% (p=0.00016. This was achieved with 16.16% of DSI-assisted biopsies finding CIN2+ compared to 13.24% for the preceding standard biopsies. For secondary specificity analysis, 431 women had only p<0.0001.Conclusion: The largest study, to date, of DSI used in colposcopy confirms previously reported increased detection of CIN2+, across multiple US community-based clinics. Based on the improved

  20. The unusual phase curve of Titan's surface observed by Huygens’ Descent Imager/Spectral Radiometer (United States)

    Schröder, S. E.; Keller, H. U.


    The Descent Imager/Spectral Radiometer onboard Huygens observed Titan's surface through the atmospheric methane windows [Tomasko, M.G., Doose, L., Engel, S., Dafoe, L.E., West, R., Lemmon, M., Karkoschka, E., See, C., 2008. A model of Titan's aerosols based on measurements made inside the atmosphere. Planet. Space Sci. 56, 669-707]. Infrared spectra obtained during the last stage of the descent, for which the atmospheric contribution is negligible, show that the reflectance of the surface around the sit increases with decreasing solar phase angle. Combining these with a spectrum reconstructed from reflected lamp light [Schröder, S.E., Keller, H.U., 2008. The reflectance spectrum of Titan's surface at the Huygens landing site determined by the Descent Imager/Spectral Radiometer. Planet. Space Sci. 56, 753-769] reveals a strong increase in reflectance towards zero phase angle: the opposition surge. Both shadow hiding and coherent backscatter are required to fit the phase curve with the Hapke [2002. Bidirectional Reflectance Spectroscopy 5. The Coherent Backscatter Opposition Effect and Anisotropic Scattering. Icarus 157, 523-534] model. We find the particle phase function below 60∘ phase angle to be close to isotropic, which is highly unusual for the surfaces of planetary bodies. A terrain with similar scattering properties has been identified on Triton [Lee, P., Helfenstein, P., Veverka, J., McCarthy, D., 1992. Anomalous-scattering region on Triton. Icarus 99, 82-97], and a connection with the tholins thought to be present on both worlds seems plausible. Indeed, tholin laboratory analogs are found to scatter in similar fashion [Lüthi, 2008. Remote sensing of the surface of Titan: Photometric properties, comparison with analogues, and future microscopic observations. Ph.D. Thesis, Philosophisch-naturwissenschaftlichen Fakultät, Universität Bern]. We conclude that Titan's unusual phase curve is consistent with the presence of tholins on the surface. Our result

  1. Insights into UV-induced apoptosis: ultrastructure, trichrome stain and spectral imaging. (United States)

    Miller, Marian L; Andringa, Anastasia; Dixon, Kathleen; Carty, Michael P


    Nuclear substructures associated with apoptosis in HeLa cells have been examined using light-microscopic morphometry, trichrome staining, spectral imaging and transmission electron microscopy. This detailed analysis reveals several sites where alterations in the normal cellular ultrastructure occur during apoptotic progression. To correlate these ultrastructural changes with the underlying molecular processes, we have characterized and quantified apoptotic cell morphology with and without inhibition of two caspases, which are key effectors of the apoptotic program. Using this analysis, early apoptotic events included: (a) the segregation of nucleolar components, a diminished granular component, and a reduction in number but increase in size of fibrillar centers, (b) an increase in the number of cytoplasmic ribosomes and (c) a very minimal increase in the amount of peripherally condensed DNA. Apoptosis progressed with: (a) an increase in the number of perichromatin granules and perichromatin fibrils, (b) a reduction in number of interchromatin granule centers concomitant with an increase in their size, (c) partial digestion and circumferential condensation of the DNA at the nuclear membrane and (d) rounding of the cytoplasm with an increase in organellar density and shrinkage in cell size. Endstage apoptotic cells showed: (a) one (or two) very large pools of incompletely digested DNA, (b) one (or two) very large interchromatin granule centers, (c) an increased number of perichromatin granules which were distanced from DNA and often closely apposed to the nucleolus, (d) formation of unusually condensed, highly coiled perinucleolar bodies and (e) blebbing of highly dense cytoplasm. In HeLa cells treated with UV and inhibitors of caspase 1 and 3, the length of time from early apoptosis to the formation of apoptotic bodies was greatly extended. Inhibiting caspase activity: (a) prevented the pooling of DNA, (b) retarded the formation of large interchromatin granule

  2. Spectral mixture analysis for water quality assessment over the Amazon floodplain using Hyperion/EO-1 images

    Directory of Open Access Journals (Sweden)

    Lênio Soares Galvão


    Full Text Available Water composition undergoes complex spatial and temporal variations throughout the central Amazon floodplain. This study analyzed the spectral mixtures of the optically active substances (OASs in water with spaceborne hyperspectral images. The test site was located upstream the confluence of Amazon (white water and Tapajós (clear-water rivers, where two Hyperion images were acquired from the Earth Observing One (EO-1 satellite. The first image was acquired on September 16, 2001, during the falling water period of the Amazon River. The second image was acquired on June 23, 2005, at the end of the high water period. The images were pre-processed to remove stripes of anomalous pixels, convert radiance-calibrated data to surface reflectance, mask land, clouds and macrophytes targets, and spectral subset the data within the range of 457-885nm. A sequential procedure with the techniques Minimum Noise Fraction (MNF, Pixel Purity Index (PPI and n-dimensional visualization of the MNF feature space was employed to select end-members from both images. A single set of end-members was gathered to represent the following spectrally unique OASs: clear-water; dissolved organic matter; suspended sediments; and phytoplankton. The Linear Spectral Unmixing algorithm was applied to each Hyperion image in order to map the spatial distribution of these constituents, in terms of sub-pixel fractional abundances. Results showed three patterns of changes in the water quality from high to falling flood periods: decrease of suspended inorganic matter concentration in the Amazon River; increase of suspended inorganic matter and phytoplankton concentrations in varzea lakes; and increase of phytoplankton concentration in the Tapajós River.

  3. Spectral mixture analysis for water quality assessment over the Amazon floodplain using Hyperion/EO-1 images

    Directory of Open Access Journals (Sweden)

    Lênio Soares Galvão


    Full Text Available Water composition undergoes complex spatial and temporal variations throughout the central Amazon floodplain. This study analyzed the spectral mixtures of the optically active substances (OASs in water with spaceborne hyperspectral images. The test site was located upstream the confluence of Amazon (white water and Tapajós (clear-water rivers, where two Hyperion images were acquired from the Earth Observing One (EO-1 satellite. The first image was acquired on September 16, 2001, during the falling water period of the Amazon River. The second image was acquired on June 23, 2005, at the end of the high water period. The images were pre-processed to remove stripes of anomalous pixels, convert radiance-calibrated data to surface reflectance, mask land, clouds and macrophytes targets, and spectral subset the data within the range of 457-885nm. A sequential procedure with the techniques Minimum Noise Fraction (MNF, Pixel Purity Index (PPI and n-dimensional visualization of the MNF feature space was employed to select end-members from both images. A single set of end-members was gathered to represent the following spectrally unique OASs: clear-water; dissolved organic matter; suspended sediments; and phytoplankton. The Linear Spectral Unmixing algorithm was applied to each Hyperion image in order to map the spatial distribution of these constituents, in terms of sub-pixel fractional abundances. Results showed three patterns of changes in the water quality from high to falling flood periods: decrease of suspended inorganic matter concentration in the Amazon River; increase of suspended inorganic matter and phytoplankton concentrations in varzea lakes; and increase of phytoplankton concentration in the Tapajós River.

  4. Dual-Energy Computed Tomography Gemstone Spectral Imaging: A Novel Technique to Determine Human Cardiac Calculus Composition. (United States)

    Cheng, Ching-Li; Chang, Hsiao-Huang; Ko, Shih-Chi; Huang, Pei-Jung; Lin, Shan-Yang


    Understanding the chemical composition of any calculus in different human organs is essential for choosing the best treatment strategy for patients. The purpose of this study was to assess the capability of determining the chemical composition of a human cardiac calculus using gemstone spectral imaging (GSI) mode on a single-source dual-energy computed tomography (DECT) in vitro. The cardiac calculus was directly scanned on the Discovery CT750 HD FREEdom Edition using GSI mode, in vitro. A portable fiber-optic Raman spectroscopy was also applied to verify the quantitative accuracy of the DECT measurements. The results of spectral DECT measurements indicate that effective Z values in 3 designated positions located in this calculus were 15.02 to 15.47, which are close to values of 15.74 to 15.86, corresponding to the effective Z values of calcium apatite and hydroxyapatite. The Raman spectral data were also reflected by the predominant Raman peak at 960 cm for hydroxyapatite and the minor peak at 875 cm for calcium apatite. A potential single-source DECT with GSI mode was first used to examine the morphological characteristics and chemical compositions of a giant human cardiac calculus, in vitro. The CT results were consistent with the Raman spectral data, suggesting that spectral CT imaging techniques could be accurately used to diagnose and characterize the compositional materials in the cardiac calculus.

  5. Design of spectral-spatial phase prewinding pulses and their use in small-tip fast recovery steady-state imaging. (United States)

    Williams, Sydney N; Nielsen, Jon-Fredrik; Fessler, Jeffrey A; Noll, Douglas C


    Spectrally selective "prewinding" radiofrequency pulses can counteract B0 inhomogeneity in steady-state sequences, but can only prephase a limited range of off-resonance. We propose spectral-spatial small-tip angle prewinding pulses that increase the off-resonance bandwidth that can be successfully prephased by incorporating spatially tailored excitation patterns. We present a feasibility study to compare spectral and spectral-spatial prewinding pulses. These pulses add a prephasing term to the target magnetization pattern that aims to recover an assigned off-resonance bandwidth at the echo time. For spectral-spatial pulses, the design bandwidth is centered at the off-resonance frequency for each spatial location in a field map. We use these pulses in the small-tip fast recovery steady-state sequence, which is similar to balanced steady-state free precession. We investigate improvement of spectral-spatial pulses over spectral pulses using simulations and small-tip fast recovery scans of a gel phantom and human brain. In simulation, spectral-spatial pulses yielded lower normalized root mean squared excitation error than spectral pulses. For both experiments, the spectral-spatial pulse images are also qualitatively better (more uniform, less signal loss) than the spectral pulse images. Spectral-spatial prewinding pulses can prephase over a larger range of off-resonance than their purely spectral counterparts. Magn Reson Med, 2017. © 2017 International Society for Magnetic Resonance in Medicine. © 2017 International Society for Magnetic Resonance in Medicine.

  6. Effects of Spectral Band Differences between Landsat 8 Operational Land Imager (OLI) and Sentinel 2A Multispectral Instrument (MSI) (United States)

    Micijevic, E.; Haque, M. O.


    In satellite remote sensing, Landsat sensors are recognized for providing well calibrated satellite images for over four decades. This image data set provides an important contribution to detection and temporal analysis of land changes. Landsat 8 (L8), the latest satellite of the Landsat series, was designed to continue its legacy as well as to embrace advanced technology and satisfy the demand of the broader scientific community. Sentinel 2A (S2A), a European satellite launched in June 2015, is designed to keep data continuity of Landsat and SPOT like satellites. The S2A MSI sensor is equipped with spectral bands similar to L8 OLI and includes some additional ones. Compared to L8 OLI, green and near infrared MSI bands have narrower bandwidths, whereas coastal-aerosol (CA) and cirrus have larger bandwidths. The blue and red MSI bands cover higher wavelengths than the matching OLI bands. Although the spectral band differences are not large, their combination with the spectral signature of a studied target can largely affect the Top Of Atmosphere (TOA) reflectance seen by the sensors. This study investigates the effect of spectral band differences between S2A MSI and L8 OLI sensors. The differences in spectral bands between sensors can be assessed by calculating Spectral Band Adjustment Factors (SBAF). For radiometric calibration purposes, the SBAFs for the calibration test site are used to bring the two sensors to the same radiometric scale. However, the SBAFs are target dependent and different sensors calibrated to the same radiometric scale will (correctly!) measure different reflectance for the same target. Thus, when multiple sensors are used to study a given target, the sensor responses need to be adjusted using SBAFs specific to that target. Comparison of the SBAFs for S2A MSI and L8 OLI based on various vegetation spectral profiles revealed variations in radiometric responses as high as 15%. Depending on target under study, these differences could be even

  7. Assessing the Spectral Properties of Sunlit and Shaded Components in Rice Canopies with Near-Ground Imaging Spectroscopy Data. (United States)

    Zhou, Kai; Deng, Xinqiang; Yao, Xia; Tian, Yongchao; Cao, Weixing; Zhu, Yan; Ustin, Susan L; Cheng, Tao


    Monitoring the components of crop canopies with remote sensing can help us understand the within-canopy variation in spectral properties and resolve the sources of uncertainties in the spectroscopic estimation of crop foliar chemistry. To date, the spectral properties of leaves and panicles in crop canopies and the shadow effects on their spectral variation remain poorly understood due to the insufficient spatial resolution of traditional spectroscopy data. To address this issue, we used a near-ground imaging spectroscopy system with high spatial and spectral resolutions to examine the spectral properties of rice leaves and panicles in sunlit and shaded portions of canopies and evaluate the effect of shadows on the relationships between spectral indices of leaves and foliar chlorophyll content. The results demonstrated that the shaded components exhibited lower reflectance amplitude but stronger absorption features than their sunlit counterparts. Specifically, the reflectance spectra of panicles had unique double-peak absorption features in the blue region. Among the examined vegetation indices (VIs), significant differences were found in the photochemical reflectance index (PRI) between leaves and panicles and further differences in the transformed chlorophyll absorption reflectance index (TCARI) between sunlit and shaded components. After an image-level separation of canopy components with these two indices, statistical analyses revealed much higher correlations between canopy chlorophyll content and both PRI and TCARI of shaded leaves than for those of sunlit leaves. In contrast, the red edge chlorophyll index (CIRed-edge) exhibited the strongest correlations with canopy chlorophyll content among all vegetation indices examined regardless of shadows on leaves. These findings represent significant advances in the understanding of rice leaf and panicle spectral properties under natural light conditions and demonstrate the significance of commonly overlooked shaded


    Directory of Open Access Journals (Sweden)

    L. Homolová


    Full Text Available In this study we evaluated various spectral inputs for retrieval of forest chlorophyll content (Cab and leaf area index (LAI from high spectral and spatial resolution airborne imaging spectroscopy data collected for two forest study sites in the Czech Republic (beech forest at Štítná nad Vláří and spruce forest at Bílý Kříž. The retrieval algorithm was based on a machine learning method – support vector regression (SVR. Performance of the four spectral inputs used to train SVR was evaluated: a all available hyperspectral bands, b continuum removal (CR 645 – 710 nm, c CR 705 – 780 nm, and d CR 680 – 800 nm. Spectral inputs and corresponding SVR models were first assessed at the level of spectral databases simulated by combined leaf-canopy radiative transfer models PROSPECT and DART. At this stage, SVR models using all spectral inputs provided good performance (RMSE for Cab −2 and for LAI < 1.5, with consistently better performance for beech over spruce site. Since application of trained SVRs on airborne hyperspectral images of the spruce site produced unacceptably overestimated values, only the beech site results were analysed. The best performance for the Cab estimation was found for CR bands in range of 645 – 710 nm, whereas CR bands in range of 680 – 800 nm were the most suitable for LAI retrieval. The CR transformation reduced the across-track bidirectional reflectance effect present in airborne images due to large sensor field of view.

  9. Newly Diagnosed Breast Cancer: Comparison of Contrast-enhanced Spectral Mammography and Breast MR Imaging in the Evaluation of Extent of Disease. (United States)

    Lee-Felker, Stephanie A; Tekchandani, Leena; Thomas, Mariam; Gupta, Esha; Andrews-Tang, Denise; Roth, Antoinette; Sayre, James; Rahbar, Guita


    Purpose To compare the diagnostic performances of contrast material-enhanced spectral mammography and breast magnetic resonance (MR) imaging in the detection of index and secondary cancers in women with newly diagnosed breast cancer by using histologic or imaging follow-up as the standard of reference. Materials and Methods This institutional review board-approved, HIPAA-compliant, retrospective study included 52 women who underwent breast MR imaging and contrast-enhanced spectral mammography for newly diagnosed unilateral breast cancer between March 2014 and October 2015. Of those 52 patients, 46 were referred for contrast-enhanced spectral mammography and targeted ultrasonography because they had additional suspicious lesions at MR imaging. In six of the 52 patients, breast cancer had been diagnosed at an outside institution. These patients were referred for contrast-enhanced spectral mammography and targeted US as part of diagnostic imaging. Images from contrast-enhanced spectral mammography were analyzed by two fellowship-trained breast imagers with 2.5 years of experience with contrast-enhanced spectral mammography. Sensitivity, specificity, positive predictive value (PPV), and negative predictive value were calculated for both imaging modalities and compared by using the Bennett statistic. Results Fifty-two women with 120 breast lesions were included for analysis (mean age, 50 years; range, 29-73 years). Contrast-enhanced spectral mammography had similar sensitivity to MR imaging (94% [66 of 70 lesions] vs 99% [69 of 70 lesions]), a significantly higher PPV than MR imaging (93% [66 of 71 lesions] vs 60% [69 of 115 lesions]), and fewer false-positive findings than MR imaging (five vs 45) (P contrast-enhanced spectral mammography depicted 11 of the 11 secondary cancers (100%) and MR imaging depicted 10 (91%). Conclusion Contrast-enhanced spectral mammography is potentially as sensitive as MR imaging in the evaluation of extent of disease in newly diagnosed

  10. Development of a technique based on multi-spectral imaging for monitoring the conservation of cultural heritage objects. (United States)

    Marengo, Emilio; Manfredi, Marcello; Zerbinati, Orfeo; Robotti, Elisa; Mazzucco, Eleonora; Gosetti, Fabio; Bearman, Greg; France, Fenella; Shor, Pnina


    A new approach for monitoring the state of conservation of cultural heritage objects surfaces is being developed. The technique utilizes multi-spectral imaging, multivariate analysis and statistical process control theory for the automatic detection of a possible deterioration process, its localization and identification, and the wavelengths most sensitive to detecting this before the human eye can detect the damage or potential degradation changes occur. A series of virtual degradation analyses were performed on images of parchment in order to test the proposed algorithm in controlled conditions. The spectral image of a Dead Sea Scroll (DSS) parchment, IAA (Israel Antiquities Authority) inventory plate # 279, 4Q501 Apocryphal Lamentations B, taken during the 2008 Pilot of the DSS Digitization Project, was chosen for the simulation. Copyright © 2011 Elsevier B.V. All rights reserved.

  11. Removal of Optically Thick Clouds from Multi-Spectral Satellite Images Using Multi-Frequency SAR Data

    Directory of Open Access Journals (Sweden)

    Robert Eckardt


    Full Text Available This study presents a method for the reconstruction of pixels contaminated by optical thick clouds in multi-spectral Landsat images using multi-frequency SAR data. A number of reconstruction techniques have already been proposed in the scientific literature. However, all of the existing techniques have certain limitations. In order to overcome these limitations, we expose the Closest Spectral Fit (CSF method proposed by Meng et al. to a new, synergistic approach using optical and SAR data. Therefore, the term Closest Feature Vector (CFV is introduced. The technique facilitates an elegant way to avoid radiometric distortions in the course of image reconstruction. Furthermore the cloud cover removal is independent from underlying land cover types and assumptions on seasonality, etc. The methodology is applied to mono-temporal, multi-frequency SAR data from TerraSAR-X (X-Band, ERS (C-Band and ALOS Palsar (L-Band. This represents a way of thinking about Radar data not as foreign, but as additional data source in multi-spectral remote sensing. For the assessment of the image restoration performance, an experimental framework is established and a statistical evaluation protocol is designed. The results show the potential of a synergistic usage of multi-spectral and SAR data to overcome the loss of data due to cloud cover.

  12. Detection of melanomas by digital imaging of spectrally resolved UV light-induced autofluorescence of human skin (United States)

    Chwirot, B. W.; Chwirot, S.; Jedrzejczyk, W.; Redzinski, J.; Raczynska, A. M.; Telega, K.


    We studied spectral and spatial distributions of the intensity of the ultraviolet light-excited fluorescence of human skin. Our studied performed in situ in 162 patients with malignant and non-malignant skin lesions resulted in a new method of detecting melanomas in situ using digital imaging of the spectrally resolved fluorescence. With our diagnostic algorithm we could successfully detect 88.5% of the cases of melanoma in the group of patients subject to examinations with the fluorescence method. A patent application for the method has been submitted to the Patent Office in Warsaw.

  13. Intraretinal hyperreflective foci on spectral-domain optical coherence tomographic images of patients with retinitis pigmentosa. (United States)

    Kuroda, Masako; Hirami, Yasuhiko; Hata, Masayuki; Mandai, Michiko; Takahashi, Masayo; Kurimoto, Yasuo


    The purpose of this study was to observe the characteristic findings of spectral-domain optical coherence tomography (SD-OCT) images in the retinas of patients with retinitis pigmentosa and to evaluate their distribution patterns in the early and advanced stages of the disease. A total of 184 patients (368 eyes) with retinitis pigmentosa were observed using SD-OCT. We studied the presence or absence of continuous inner/outer segment (IS/OS) lines, presence of thinning of the retinal pigment epithelium-Bruch's membrane complex, and distribution patterns of hyperreflective foci in the inner and outer nuclear layers (INL and ONL). The IS/OS junction had partially disappeared in 275 eyes, which were at the early stage of retinitis pigmentosa (group X), whereas the junction had totally disappeared in 93, which were at the advanced stage of retinitis pigmentosa (group Y). Hyperreflective foci in the INL were observed in a significantly larger proportion of the eyes in group X than in group Y (90% versus 61%, Pretinitis pigmentosa and hyperreflective foci in the ONL were more frequently observed in the advanced stage. Hyperreflective foci may be indicative of changes in the retinal structure at each stage of retinitis pigmentosa.

  14. Spectrally resolved fluorescence lifetime imaging of Nile red for measurements of intracellular polarity (United States)

    Levitt, James A.; Chung, Pei-Hua; Suhling, Klaus


    Spectrally resolved confocal microscopy and fluorescence lifetime imaging have been used to measure the polarity of lipid-rich regions in living HeLa cells stained with Nile red. The emission peak from the solvatochromic dye in lipid droplets is at a shorter wavelength than other, more polar, stained internal membranes, and this is indicative of a low polarity environment. We estimate that the dielectric constant, ɛ, is around 5 in lipid droplets and 25FLIM) data show that intracellular Nile red exhibits complex, multiexponential fluorescence decays due to emission from a short lifetime locally excited state and a longer lifetime intramolecular charge transfer state. We measure an increase in the average fluorescence lifetime of the dye with increasing emission wavelength, as shown using phasor plots of the FLIM data. We also show using these phasor plots that the shortest lifetime decay components arise from lipid droplets. Thus, fluorescence lifetime is a viable contrast parameter for distinguishing lipid droplets from other stained lipid-rich regions. Finally, we discuss the FLIM of Nile red as a method for simultaneously mapping both polarity and relative viscosity based on fluorescence lifetime measurements.

  15. Overhead Detection of Underground Nuclear Explosions by Multi-Spectral and Infrared Imaging

    Energy Technology Data Exchange (ETDEWEB)

    Henderson, J. R. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Smith, M. O. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Zelinski, M. E. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)


    The Comprehensive Test Ban Treaty (CTBT) permits Multi-Spectral and InfraRed Imaging (MSIR) to be performed as part of an On-Site Inspection (OSI) for the purpose of reducing the search area for the location of a possible underground nuclear explosion (UNE). Dedicated airborne MSIR measurements have not been made in conjunction with historical or recent UNE’s, so satellite data has been used to determine if there are MSIR observables associated with recent UNE’s. In this work MSIR data from commercial satellites has been used to show that there are detectable surface observables which can be used to greatly reduce the search area for the location of the UNE. This has been demonstrated using Landsat data of the Indian, Pakistani, and North Korean UNE’s in the last 12 years, and with GeoEye-1 data for the North Korean tests. The techniques used typically identify a region of interest less than 1 km2 in size (compared to the nominal 1,000 km2 search area), and the few false positives have been resolvable as such by using visible imagery. The results of this study show that MSIR data from satellites can be used to help prepare the inspection team for an OSI.

  16. Progress in digestive endoscopy: Flexible Spectral Imaging Colour Enhancement (FICE)-technical review. (United States)

    Negreanu, L; Preda, C M; Ionescu, D; Ferechide, D


    Background. A substantial advance in digestive endoscopy that has been made during the last decade is represented by digital chromoendoscopy, which was developed as a quicker and sometimes better alternative to the gold standard of dye spraying. Fujifilm developed a virtual coloration technique called Flexible spectral Imaging Color Enhancement (FICE). FICE provides a better detection of lesions of "minimal" esophagitis, of dysplasia in Barrett's esophagus and of squamous cell esophageal cancer. The use of FICE resulted in an improvement in the visualization of the early gastric cancer, being less invasive, and time consuming than the classic dye methods. Current evidence does not support FICE for screening purposes in colon cancer but it definitely improves characterization of colonic lesions. Its use in inflammatory bowel disease is still controversial and in video capsule endoscopy is considered a substantial progress. Conclusions. The use of FICE endoscopy in routine clinical practice can increase the diagnostic yield and can provide a better characterization of lesions. Future studies to validate its use, the good choice of channels, and the "perfect indications" and to provide common definitions and classifications are necessary.

  17. Differentiating malignant vertebral tumours from non-malignancies with CT spectral imaging: a preliminary study

    Energy Technology Data Exchange (ETDEWEB)

    Yuan, Yuan; Zhang, Yan; Lang, Ning; Yuan, Huishu [Peking University Third Hospital, No.49 North Garden Street, Haidian District, Beijing (China); Li, Jianying [GE Healthcare, CT imaging Research Center, Beijing (China)


    To investigate the value of dual-energy spectral computed tomography (DESCT) for differentiating malignant vertebral tumours from non-malignancies during venous phase. This study was institutional review board-approved, and written informed consent was obtained from all patients. Thirty-seven patients were examined by DESCT during venous phase. Twenty patients had malignant vertebral tumours, 17 had non-malignant vertebral tumours. The iodine/water densities for the lesion, the lesion-to-muscle ratio, and lesion-to-artery ratio for iodine density measurements were calculated and compared between the two groups with the two-tailed Student t test. A p-value < 0.05 was considered statistically significant. Sensitivity and specificity were compared between the qualitative and quantitative studies. The iodine density, lesion-to-muscle ratio, and lesion-to-artery ratio of the iodine density measurement for malignant vertebral tumours were significantly different from the respective values for non-malignancies (all p < 0.05). Using 0.52 as the threshold value for the lesion-to-artery iodine density ratio, one could obtain sensitivity of 85 % and specificity of 100 % for differentiating malignant vertebral tumours from non-malignancies, significantly higher than the qualitative diagnosis. DESCT imaging enables analysis of a number of additional quantitative CT parameters to improve the accuracy for differentiating malignant vertebral tumours from non-malignancies during venous phase. (orig.)

  18. Spectral contrast-enhanced optical coherence tomography for improved detection of tumor microvasculature and functional imaging of lymphatic drainage (United States)

    SoRelle, Elliott D.; Liba, Orly; Sen, Debasish; de la Zerda, Adam


    Optical Coherence Tomography (OCT) is well-suited to study in vivo dynamics of blood circulation and lymphatic flow because of the technique's combination of rapid image acquisition, micron spatial resolution, and penetration depth in turbid tissues. However, OCT has been historically constrained by a dearth of contrast agents that are readily distinguished from the strong scattering intrinsic to biological tissues. In this study, we demonstrate large gold nanorods (LGNRs) as optimized contrast agents for OCT. LGNRs produce 32-fold greater backscattering than GNRs previously tested for contrast-enhanced OCT. Furthermore, LGNRs exhibit 110-fold stronger spectral signal than conventional GNRs when coupled with custom spectral detection algorithms. This signal enhancement enables picomolar OCT detection sensitivity in vivo and single-particle detection against optically-clear backgrounds. Moreover, the ability to synthesize LGNRs with tunable spectral peaks provides a viable platform for multiplexed imaging studies. To explore the advantages of LGNRs as OCT contrast agents, we implemented them for noninvasive 3D imaging of tumor blood supply and active lymphatic drainage in mice. Spectral detection of LGNRs enabled 100% improvement in imaging depth for detecting microvasculature (vessels 20 μm in diameter) in U87MG glioblastoma xenografts in mice pinnae. We also demonstrated our approach's ability to map the spatial dependence of lymph drainage and flow directionality within lymphatic capillaries. Using LGNRs with distinct spectra, we further identified the functional states of individual lymphatic valves in vivo. Thus, this approach provides a powerful new platform for functional imaging that may be extended for future molecular imaging studies with OCT.

  19. Assessing the performance of aerial image point cloud and spectral metrics in predicting boreal forest canopy cover (United States)

    Melin, M.; Korhonen, L.; Kukkonen, M.; Packalen, P.


    Canopy cover (CC) is a variable used to describe the status of forests and forested habitats, but also the variable used primarily to define what counts as a forest. The estimation of CC has relied heavily on remote sensing with past studies focusing on satellite imagery as well as Airborne Laser Scanning (ALS) using light detection and ranging (lidar). Of these, ALS has been proven highly accurate, because the fraction of pulses penetrating the canopy represents a direct measurement of canopy gap percentage. However, the methods of photogrammetry can be applied to produce point clouds fairly similar to airborne lidar data from aerial images. Currently there is little information about how well such point clouds measure canopy density and gaps. The aim of this study was to assess the suitability of aerial image point clouds for CC estimation and compare the results with those obtained using spectral data from aerial images and Landsat 5. First, we modeled CC for n = 1149 lidar plots using field-measured CCs and lidar data. Next, this data was split into five subsets in north-south direction (y-coordinate). Finally, four CC models (AerialSpectral, AerialPointcloud, AerialCombi (spectral + pointcloud) and Landsat) were created and they were used to predict new CC values to the lidar plots, subset by subset, using five-fold cross validation. The Landsat and AerialSpectral models performed with RMSEs of 13.8% and 12.4%, respectively. AerialPointcloud model reached an RMSE of 10.3%, which was further improved by the inclusion of spectral data; RMSE of the AerialCombi model was 9.3%. We noticed that the aerial image point clouds managed to describe only the outermost layer of the canopy and missed the details in lower canopy, which was resulted in weak characterization of the total CC variation, especially in the tails of the data.

  20. The pre-launch characterization of SIMBIO-SYS/VIHI imaging spectrometer for the BepiColombo mission to Mercury. II. Spectral calibrations. (United States)

    Altieri, F; Filacchione, G; Capaccioni, F; Carli, C; Dami, M; Tommasi, L; Aroldi, G; Borrelli, D; Barbis, A; Baroni, M; Pastorini, G; Ficai Veltroni, I; Mugnuolo, R


    The Visible and near Infrared Hyperspectral Imager (VIHI) is the VIS-IR spectrometer with imaging capabilities aboard the ESA BepiColombo mission to Mercury. In this second paper, we report the instrument spectral characterization derived by the calibration campaign carried out before spacecraft integration. Complementary measurements concerning radiometric and linearity responses, as well as geometric performances, are described in Paper I [G. Filacchione et al., Rev. Sci. Instrum. 88, 094502 (2017)]. We have verified the VIHI spectral range, spectral dispersion, spectral response function, and spectral uniformity along the whole slit. Instrumental defects and optical aberrations due to smiling and keystone effects have been evaluated, and they are lower than the design requirement (spectral dispersion is well represented by a second order curve, rather than to be constant along the spectral dimension.

  1. The pre-launch characterization of SIMBIO-SYS/VIHI imaging spectrometer for the BepiColombo mission to Mercury. II. Spectral calibrations (United States)

    Altieri, F.; Filacchione, G.; Capaccioni, F.; Carli, C.; Dami, M.; Tommasi, L.; Aroldi, G.; Borrelli, D.; Barbis, A.; Baroni, M.; Pastorini, G.; Ficai Veltroni, I.; Mugnuolo, R.


    The Visible and near Infrared Hyperspectral Imager (VIHI) is the VIS-IR spectrometer with imaging capabilities aboard the ESA BepiColombo mission to Mercury. In this second paper, we report the instrument spectral characterization derived by the calibration campaign carried out before spacecraft integration. Complementary measurements concerning radiometric and linearity responses, as well as geometric performances, are described in Paper I [G. Filacchione et al., Rev. Sci. Instrum. 88, 094502 (2017)]. We have verified the VIHI spectral range, spectral dispersion, spectral response function, and spectral uniformity along the whole slit. Instrumental defects and optical aberrations due to smiling and keystone effects have been evaluated, and they are lower than the design requirement (<1/3 pixel). The instrumental response is uniform along the whole slit, while spectral dispersion is well represented by a second order curve, rather than to be constant along the spectral dimension.

  2. The Hyper Suprime-Cam software pipeline (United States)

    Bosch, James; Armstrong, Robert; Bickerton, Steven; Furusawa, Hisanori; Ikeda, Hiroyuki; Koike, Michitaro; Lupton, Robert; Mineo, Sogo; Price, Paul; Takata, Tadafumi; Tanaka, Masayuki; Yasuda, Naoki; AlSayyad, Yusra; Becker, Andrew C.; Coulton, William; Coupon, Jean; Garmilla, Jose; Huang, Song; Krughoff, K. Simon; Lang, Dustin; Leauthaud, Alexie; Lim, Kian-Tat; Lust, Nate B.; MacArthur, Lauren A.; Mandelbaum, Rachel; Miyatake, Hironao; Miyazaki, Satoshi; Murata, Ryoma; More, Surhud; Okura, Yuki; Owen, Russell; Swinbank, John D.; Strauss, Michael A.; Yamada, Yoshihiko; Yamanoi, Hitomi


    In this paper, we describe the optical imaging data processing pipeline developed for the Subaru Telescope's Hyper Suprime-Cam (HSC) instrument. The HSC Pipeline builds on the prototype pipeline being developed by the Large Synoptic Survey Telescope's Data Management system, adding customizations for HSC, large-scale processing capabilities, and novel algorithms that have since been reincorporated into the LSST codebase. While designed primarily to reduce HSC Subaru Strategic Program (SSP) data, it is also the recommended pipeline for reducing general-observer HSC data. The HSC pipeline includes high-level processing steps that generate coadded images and science-ready catalogs as well as low-level detrending and image characterizations.

  3. Intrasurgical Human Retinal Imaging With Manual Instrument Tracking Using a Microscope-Integrated Spectral-Domain Optical Coherence Tomography Device. (United States)

    Hahn, Paul; Carrasco-Zevallos, Oscar; Cunefare, David; Migacz, Justin; Farsiu, Sina; Izatt, Joseph A; Toth, Cynthia A


    To characterize the first in-human intraoperative imaging using a custom prototype spectral-domain microscope-integrated optical coherence tomography (MIOCT) device during vitreoretinal surgery with instruments in the eye. Under institutional review board approval for a prospective intraoperative study, MIOCT images were obtained at surgical pauses with instruments held static in the vitreous cavity and then concurrently with surgical maneuvers. Postoperatively, MIOCT images obtained at surgical pauses were compared with images obtained with a high-resolution handheld spectral-domain OCT (HHOCT) system with objective endpoints, including acquisition of images acceptable for analysis and identification of predefined macular morphologic or pathologic features. Human MIOCT images were successfully obtained before incision and during pauses in surgical maneuvers. MIOCT imaging confirmed preoperative diagnoses, such as epiretinal membrane, full-thickness macular hole, and vitreomacular traction and demonstrated successful achievement of surgical goals. MIOCT and HHOCT images obtained at surgical pauses in two cohorts of five patients were comparable with greater than or equal to 80% correlation in 80% of patients. Real-time video-imaging concurrent with surgical manipulations enabled, for the first time using this device, visualization of dynamic instrument-retina interaction with targeted OCT tracking. MIOCT is successful for imaging at surgical pauses and for real-time image guidance with implementation of targeted OCT tracking. Even faster acquisition speeds are currently being developed with incorporation of a swept-source MIOCT engine. Further refinements and investigations will be directed toward continued integration for real-time volumetric imaging of surgical maneuvers. Ongoing development of seamless MIOCT systems will likely transform surgical visualization, approaches, and decision-making.

  4. Metal artifacts reduction using monochromatic images from spectral CT: Evaluation of pedicle screws in patients with scoliosis

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Yang, E-mail: [Department of Radiology, The Affiliated Nanjing Drum Tower Hospital of Nanjing University Medical School, Nanjing 210008 (China); Qian, Bangping, E-mail: [Spine Service, Drum Tower Hospital, Nanjing University Medical School, Nanjing 210008 (China); Li, Baoxin, E-mail: [Department of Radiology, The Affiliated Nanjing Drum Tower Hospital of Nanjing University Medical School, Nanjing 210008 (China); Qin, Guochu, E-mail: [Department of Radiology, The Affiliated Nanjing Drum Tower Hospital of Nanjing University Medical School, Nanjing 210008 (China); Zhou, Zhengyang, E-mail: [Department of Radiology, The Affiliated Nanjing Drum Tower Hospital of Nanjing University Medical School, Nanjing 210008 (China); Qiu, Yong, E-mail: [Spine Service, Drum Tower Hospital, Nanjing University Medical School, Nanjing 210008 (China); Sun, Xizhao, E-mail: [Department of Radiology and Urology, The Affiliated Nanjing Drum Tower Hospital of Nanjing University Medical School, No. 321 Zhongshan Road, Nanjing 210008 (China); Zhu, Bin, E-mail: [Department of Radiology, The Affiliated Nanjing Drum Tower Hospital of Nanjing University Medical School, Nanjing 210008 (China)


    Purpose: To evaluate the effectiveness of spectral CT in reducing metal artifacts caused by pedicle screws in patients with scoliosis. Materials and methods: Institutional review committee approval and written informed consents from patients were obtained. 18 scoliotic patients with a total of 228 pedicle screws who underwent spectral CT imaging were included in this study. Monochromatic image sets with and without the additional metal artifacts reduction software (MARS) correction were generated with photon energy at 65 keV and from 70 to 140 keV with 10 keV interval using the 80 kVp and 140 kVp projection sets. Polychromatic images corresponded to the conventional 140 kVp imaging were also generated from the same scan data as a control group. Both objective evaluation (screw width and quantitative artifacts index measurements) and subjective evaluation (depiction of pedicle screws, surrounding structures and their relationship) were performed. Results: Image quality of monochromatic images in the range from 110 to 140 keV (0.97 ± 0.28) was rated superior to the conventional polychromatic images (2.53 ± 0.54) and also better than monochromatic images with lower energy. Images of energy above 100 keV also give accurate measurement of the width of screws and relatively low artifacts index. The form of screws was slightly distorted in MARS reconstruction. Conclusions: Compared to conventional polychromatic images, monochromatic images acquired from dual-energy CT provided superior image quality with much reduced metal artifacts of pedicle screws in patients with scoliosis. Optimal energy range was found between 110 and 140 keV.

  5. A digital x-ray tomosynthesis coupled near infrared spectral tomography system for dual-modality breast imaging. (United States)

    Krishnaswamy, Venkataramanan; Michaelsen, Kelly E; Pogue, Brian W; Poplack, Steven P; Shaw, Ian; Defrietas, Ken; Brooks, Ken; Paulsen, Keith D


    A Near Infrared Spectral Tomography (NIRST) system has been developed and integrated into a commercial Digital Breast Tomosynthesis (DBT) scanner to allow structural and functional imaging of breast in vivo. The NIRST instrument uses an 8-wavelength continuous wave (CW) laser-based scanning source assembly and a 75-element silicon photodiode solid-state detector panel to produce dense spectral and spatial projection data from which spectrally constrained 3D tomographic images of tissue chromophores are produced. Integration of the optical imaging system into the DBT scanner allows direct co-registration of the optical and DBT images, while also facilitating the synergistic use of x-ray contrast as anatomical priors in optical image reconstruction. Currently, the total scan time for a combined NIRST-DBT exam is ~50s with data collection from 8 wavelengths in the optical scan requiring ~42s to complete. The system was tested in breast simulating phantoms constructed using intralipid and blood in an agarose matrix with a 3 cm x 2 cm cylindrical inclusion at 1 cm depth from the surface. Diffuse image reconstruction of total hemoglobin (HbT) concentration resulted in accurate recovery of the lateral size and position of the inclusion to within 6% and 8%, respectively. Use of DBT structural priors in the NIRST reconstruction process improved the quantitative accuracy of the HbT recovery, and led to linear changes in imaged versus actual contrast, underscoring the advantages of dual-modality optical imaging approaches. The quantitative accuracy of the system can be further improved with independent measurements of scattering properties through integration of frequency or time domain data.

  6. Updating Landsat-based forest cover maps with MODIS images using multiscale spectral-spatial-temporal superresolution mapping (United States)

    Zhang, Yihang; Li, Xiaodong; Ling, Feng; Atkinson, Peter M.; Ge, Yong; Shi, Lingfei; Du, Yun


    With the high deforestation rates of global forest covers during the past decades, there is an ever-increasing need to monitor forest covers at both fine spatial and temporal resolutions. Moderate Resolution Imaging Spectroradiometer (MODIS) and Landsat series images have been used commonly for satellite-derived forest cover mapping. However, the spatial resolution of MODIS images and the temporal resolution of Landsat images are too coarse to observe forest cover at both fine spatial and temporal resolutions. In this paper, a novel multiscale spectral-spatial-temporal superresolution mapping (MSSTSRM) approach is proposed to update Landsat-based forest maps by integrating current MODIS images with the previous forest maps generated from Landsat image. Both the 240 m MODIS bands and 480 m MODIS bands were used as inputs of the spectral energy function of the MSSTSRM model. The principle of maximal spatial dependence was used as the spatial energy function to make the updated forest map spatially smooth. The temporal energy function was based on a multiscale spatial-temporal dependence model, and considers the land cover changes between the previous and current time. The novel MSSTSRM model was able to update Landsat-based forest maps more accurately, in terms of both visual and quantitative evaluation, than traditional pixel-based classification and the latest sub-pixel based super-resolution mapping methods The results demonstrate the great efficiency and potential of MSSTSRM for updating fine temporal resolution Landsat-based forest maps using MODIS images.

  7. A BVMF-B algorithm for nonconvex nonlinear regularized decomposition of spectral x-ray projection images (United States)

    Pham, Mai Quyen; Ducros, Nicolas; Nicolas, Barbara


    Spectral computed tomography (CT) exploits the measurements obtained by a photon counting detector to reconstruct the chemical composition of an object. In particular, spectral CT has shown a very good ability to image K-edge contrast agent. Spectral CT is an inverse problem that can be addressed solving two subproblems, namely the basis material decomposition (BMD) problem and the tomographic reconstruction problem. In this work, we focus on the BMD problem, which is ill-posed and nonlinear. The BDM problem is classically either linearized, which enables reconstruction based on compressed sensing methods, or nonlinearly solved with no explicit regularization scheme. In a previous communication, we proposed a nonlinear regularized Gauss-Newton (GN) algorithm.1 However, this algorithm can only be applied to convex regularization functionals. In particular, the lp (p soft tissue, bone and gadolinium, which is scanned with a 90-kV x-ray tube and a 3-bin photon counting detector.

  8. Waterborne spectral induced polarization imaging to investigate stream-aquifer exchange (United States)

    Hoehn, Philipp; Flores Orozco, Adrián; Hofmann, Thilo


    Detailed information about the geometrical and hydraulic properties of a streambed's colmation layer is critical for accurate numerical modelling of stream-aquifer exchange, which in turn is of pivotal importance for adequate groundwater management at bank filtration sites. Inverse methods in numerical groundwater modeling tend to bear high spatial uncertainty and existing methods are limited, e.g. fiber-optic distributed temperature sensing (FO-DTS) by its unidirectional sensitivity towards groundwater discharge. To overcome such deficiencies we propose the application of high resolution spectral induced polarization (SIP) imaging. The objective was to elucidate its capability to provide spatial estimates of parameters of a Cauchy-type boundary condition in groundwater flow modeling, namely hydraulic conductivity and thickness of potentially colmated substream sediment as well as stream stage. SIP measurements were collected along selected reaches of a losing-disconnected subalpine stream in a broad frequency bandwidth (0.063-225 Hz) using an array of 32 electrodes (at 1 m spacing), which was fully submerged at the stream bottom, while the equipment was mounted on a stationary-positioned inflatable rubber boat. A total of 32 transient infiltration tests, using an open-bottom standpipe (4.2 cm inner diameter), were performed to determine vertical hydraulic conductivity (kv) of the streambed at discrete positions along the electrical arrays. Imaging results of the real component of the complex electrical conductivity (σ') permitted to delineate stream stage and the general substream architecture; whereas the imaginary component (σ") revealed larger variability within the substream sediment, likely related to changes in the textural parameters. The kv dataset confirms the textural variability with values varying between 3•10-2 and 5•10-7 ms-1. The electrical imaging results exhibit the strongest polarization response at 75 Hz, suggesting that fine grains, as

  9. Reducing Poisson noise and baseline drift in X-ray spectral images with bootstrap Poisson regression and robust nonparametric regression

    CERN Document Server

    Zhu, Feng; Feng, Weiyue; Wang, Huajian; Huang, Shaosen; Lv, Yisong; Chen, Yong


    X-ray spectral imaging provides quantitative imaging of trace elements in biological sample with high sensitivity. We propose a novel algorithm to promote the signal-to-noise ratio (SNR) of X-ray spectral images that have low photon counts. Firstly, we estimate the image data area that belongs to the homogeneous parts through confidence interval testing. Then, we apply the Poisson regression through its maximum likelihood estimation on this area to estimate the true photon counts from the Poisson noise corrupted data. Unlike other denoising methods based on regression analysis, we use the bootstrap resampling methods to ensure the accuracy of regression estimation. Finally, we use a robust local nonparametric regression method to estimate the baseline and subsequently subtract it from the X-ray spectral data to further improve the SNR of the data. Experiments on several real samples show that the proposed method performs better than some state-of-the-art approaches to ensure accuracy and precision for quantit...

  10. Computer-aided diagnosis for preoperative invasion depth of gastric cancer with dual-energy spectral CT imaging. (United States)

    Li, Chao; Shi, Cen; Zhang, Huan; Hui, Chun; Lam, Kin Man; Zhang, Su


    This study evaluates the accuracy of dual-energy spectral computed tomography (DEsCT) imaging with the aid of computer-aided diagnosis (CAD) system in assessing serosal invasion in patients with gastric cancer. Thirty patients with gastric cancer were enrolled in this study. Two types of features (information) were collected with the use of DEsCT imaging: conventional features including patient's clinical information (eg, age, gender) and descriptive characteristics on the CT images (eg, location of the lesion, wall thickness at the gastric cardia) and additional spectral CT features extracted from monochromatic images (eg, 60 keV) and material-decomposition images (eg, iodine- and water-density images). The classification results of the CAD system were compared to pathologic findings. Important features can be found out using support vector machine classification method in combination with feature-selection technique thereby helping the radiologists diagnose better. Statistical analysis showed that for the collected cases, the feature "long axis" was significantly different between group A (serosa negative) and group B (serosa positive) (P < .05). By adding quantitative spectral features from several regions of interest (ROIs), the total classification accuracy was improved from 83.33% to 90.00%. Two feature ranking algorithms were used in the CAD scheme to derive the top-ranked features. The results demonstrated that low single-energy (approximately 60 keV) CT values, tumor size (long axis and short axis), iodine (water) density, and Effective-Z values of ROIs were important for classification. These findings concurred with the experience of the radiologist. The CAD system designed using machine-learning algorithms may be used to improve the identification accuracy in the assessment of serosal invasion in patients of gastric cancer with DEsCT imaging and provide some indicators which may be useful in predicting prognosis. Copyright © 2015 AUR. Published by

  11. Characterization of myofibrils cold structural deformation degrees of frozen pork using hyperspectral imaging coupled with spectral angle mapping algorithm. (United States)

    Cheng, Weiwei; Sun, Da-Wen; Pu, Hongbin; Wei, Qingyi


    The study investigated the possibility of using hyperspectral imaging (HSI) in the spectral range of 1000-2200nm to characterize myofibrils cold structural deformation degrees of frozen pork samples. The HSI images of pork samples frozen under different freezing rates were acquired in the frozen state without thawing. The myofibrils cold structural deformation degrees were evaluated by surface hydrophobicity (S0ANS) and Ca(2+)-ATPase activity. Spectral angle mapping (SAM) algorithm was used for the first time to extract the spectral information for regression. Compared with the optimized partial least square regression (PLSR) models based on selected wavebands by successive projections algorithm (SPA), the optimized PLSR models developed based on the spectral angles calculated by the SAM algorithm achieved comparable or even better performance with R(2)P of 0.896 for S0ANS and 0.879 for Ca(2+)-ATPase activity, respectively. The implications of the frozen meat spectrum were also analyzed in the current study. Copyright © 2017 Elsevier Ltd. All rights reserved.

  12. Automated tissue segmentation and blind recovery of (1)H MRS imaging spectral patterns of normal and diseased human brain. (United States)

    Du, Shuyan; Mao, Xiangling; Sajda, Paul; Shungu, Dikoma C


    Constrained non-negative matrix factorization (cNMF) with iterative data selection is described and demonstrated as a data analysis method for fast and automatic recovery of biochemically meaningful and diagnostically specific spectral patterns of the human brain from (1)H MRS imaging ((1)H MRSI) data. To achieve this goal, cNMF decomposes in vivo multidimensional (1)H MRSI data into two non-negative matrices representing (a) the underlying tissue-specific spectral patterns and (b) the spatial distribution of the corresponding metabolite concentrations. Central to the proposed approach is automatic iterative data selection which uses prior knowledge about the spatial distribution of the spectra to remove voxels that are due to artifacts and undesired metabolites/tissues such as the strong lipid and water components. The automatic recovery of diagnostic spectral patterns is demonstrated for long-TE (1)H MRSI data on normal human brain, multiple sclerosis, and serial brain tumor. The results show the ability of cNMF with iterative data selection to automatically and simultaneously recover tissue-specific spectral patterns and achieve segmentation of normal and diseased human brain tissue, concomitant with simplification of information content. These features of cNMF, which permit rapid recovery, reduction and interpretation of the complex diagnostic information content of large multi-dimensional spectroscopic imaging data sets, have the potential to enhance the clinical utility of in vivo(1)H MRSI.

  13. The optimal monochromatic spectral computed tomographic imaging plus adaptive statistical iterative reconstruction algorithm can improve the superior mesenteric vessel image quality. (United States)

    Yin, Xiao-Ping; Zuo, Zi-Wei; Xu, Ying-Jin; Wang, Jia-Ning; Liu, Huai-Jun; Liang, Guang-Lu; Gao, Bu-Lang


    To investigate the effect of the optimal monochromatic spectral computed tomography (CT) plus adaptive statistical iterative reconstruction on the improvement of the image quality of the superior mesenteric artery and vein. The gemstone spectral CT angiographic data of 25 patients were reconstructed in the following three groups: 70KeV, the optimal monochromatic imaging, and the optimal monochromatic plus 40%iterative reconstruction mode. The CT value, image noises (IN), background CT value and noises, contrast-to-noise ratio (CNR), signal-to-noise ratio (SNR) and image scores of the vessels and surrounding tissues were analyzed. In the 70KeV, the optimal monochromatic and the optimal monochromatic images plus 40% iterative reconstruction group, the mean scores of image quality were 3.86, 4.24 and 4.25 for the superior mesenteric artery and 3.46, 3.78 and 3.81 for the superior mesenteric vein, respectively. The image quality scores for the optimal monochromatic and the optimal monochromatic plus 40% iterative reconstruction groups were significantly greater than for the 70KeV group (Piterative reconstruction group than in the 70KeV group. The optimal monochromatic plus 40% iterative reconstruction group had significantly (Piterative reconstruction using low-contrast agent dosage and low injection rate can significantly improve the image quality of the superior mesenteric artery and vein. Copyright © 2017 Elsevier B.V. All rights reserved.

  14. Spectral imaging and passive sampling to investigate particle sources in urban desert regions. (United States)

    Wagner, Jeff; Casuccio, Gary


    Two types of electron microscopy analyses were employed along with geographic information system (GIS) mapping to investigate potential sources of PM2.5 and PM10 (airborne particulate matter smaller than 2.5 and 10 μm, respectively) in two urbanized desert areas known to exhibit PM excursions. Integrated spectral imaging maps were obtained from scanning electron microscopy/energy-dispersive X-ray spectroscopy (SEM/EDS) analyses of 13 filters collected in Imperial Valley, California. Seven were from 24 h PM10 Federal Reference Method (FRM) samplers and six were from PM2.5 FRM samplers. This technique enabled extraction of information from particles collected on complex filter matrices, and indicated that all samples exhibited substantial proportions of crustal particles. Six Imperial PM2.5 and PM10 filters selected from unusually high-PM days exhibited more large particles (2.5-15 and 10-30 μm, respectively) than did filters from low-PM days, and were more consistent with soils analyzed from the region. High winds were present on three of the six high-PM days. One of the high-PM2.5 filters also exhibited substantial fine carbonaceous soot PM, suggesting significant contributions from a combustion source. Computer-controlled SEM/EDS (CCSEM/EDS) was conducted on PM collected with UNC Passive samplers from Phoenix, Arizona. The passive samplers showed good agreement with co-located FRM PM10 and PM2.5 measurements (μg m(-3)), and also enabled detailed individual particle analysis. The CCSEM/EDS data revealed mostly crustal particles in both the Phoenix fine and coarse PM10 fractions. GIS maps of multiple dust-related parameters confirm that both Imperial Valley and Phoenix possess favorable conditions for airborne crustal PM from natural and anthropogenic sources.

  15. Hisstology: High Spectral and Spatial Resolution Magnetic Resonance Imaging Detection of Vasculature Validated by Histology and Micro–Computed Tomography

    Directory of Open Access Journals (Sweden)

    Chad R. Haney


    Full Text Available High spectral and spatial resolution (HiSS data, acquired with echo-planar spectroscopic imaging (EPSI, can be used to acquire water spectra from each small image voxel. These images are sensitive to changes in local susceptibility caused by superparamagnetic iron oxide particles (SPIO; therefore, we hypothesized that images derived from HiSS data are very sensitive to tumor neovasculature following injection of SPIO. Accurate image registration was used to validate HiSS detection of neovasculature with histology and micro–computed tomographic (microCT angiography. Athymic nude mice and Copenhagen rats were inoculated with Dunning AT6.1 prostate tumor cells in the right hind limb. The tumor region was imaged pre– and post–intravenous injection of SPIO. Three-dimensional assemblies of the CD31-stained histologic slices of the mouse legs and the microCT images of the rat vascular casts were registered with EPSI. The average distance between HiSS-predicted regions of high vascular density on magnetic resonance imaging and CD31-stained regions on histology was 200 μm. Similarly, vessels identified by HiSS in the rat images coincided with vasculature in the registered microCT image. The data demonstrate a strong correlation between tumor vasculature identified using HiSS and two gold standards: histology and microCT angiography.

  16. Anatomic vs. acquired image frame discordance in spectral domain optical coherence tomography minimum rim measurements.

    Directory of Open Access Journals (Sweden)

    Lin He

    Full Text Available PURPOSE: To quantify the effects of using the fovea to Bruch's membrane opening (FoBMO axis as the nasal-temporal midline for 30° sectoral (clock-hour spectral domain optical coherence tomography (SDOCT optic nerve head (ONH minimum rim width (MRW and area (MRA calculations. METHODS: The internal limiting membrane and BMO were delineated within 24 radial ONH B-scans in 222 eyes of 222 participants with ocular hypertension and glaucoma. For each eye the fovea was marked within the infrared reflectance image, the FoBMO angle (θ relative to the acquired image frame (AIF horizontal was calculated, the ONH was divided into 30° sectors using a FoBMO or AIF nasal/temporal axis, and SDOCT MRW and MRA were quantified within each FoBMO vs. AIF sector. For each sector, focal rim loss was calculated as the MRW and MRA gradients (i.e. the difference between the value for that sector and the one clockwise to it divided by 30°. Sectoral FoBMO vs. AIF discordance was calculated as the difference between the FoBMO and AIF values for each sector. Generalized estimating equations were used to predict the eyes and sectors of maximum FoBMO vs. AIF discordance. RESULTS: The mean FoBMO angle was -6.6±4.2° (range: -17° to +7°. FoBMO vs. AIF discordance in sectoral mean MRW and MRA was significant for 7 of 12 and 6 of 12 sectors, respectively (p<0.05, Wilcoxon test, Bonferroni correction. Eye-specific, FoBMO vs. AIF sectoral discordance was predicted by sectoral rim gradient (p<0.001 and FoBMO angle (p<0.001 and achieved maximum values of 83% for MRW and 101% for MRA. CONCLUSIONS: Using the FoBMO axis as the nasal-temporal axis to regionalize the ONH rather than a line parallel to the AIF horizontal axis significantly influences clock-hour SDOCT rim values. This effect is greatest in eyes with large FoBMO angles and sectors with focal rim loss.

  17. Detection of plum pox virus infection in selection plum trees using spectral imaging (United States)

    Angelova, Liliya; Stoev, Antoniy; Borisova, Ekaterina; Avramov, Latchezar


    Plum pox virus (PPV) is among the most studied viral diseases in the world in plants. It is considered to be one of the most devastating diseases of stone fruits in terms of agronomic impact and economic importance. Noninvasive, fast and reliable techniques are required for evaluation of the pathology in selection trees with economic impact. Such advanced tools for PPV detection could be optical techniques as light-induced fluorescence and diffuse reflectance spectroscopies. Specific regions in the electromagnetic spectra have been found to provide information about the physiological stress in plants, and consequently, diseased plants usually exhibit different spectral signature than non-stressed healthy plants in those specific ranges. In this study spectral reflectance and chlorophyll fluorescence were used for the identification of biotic stress caused by the pox virus on plum trees. The spectral responses of healthy and infected leaves from cultivars, which are widespread in Bulgaria were investigated. The two applied techniques revealed statistically significant differences between the spectral data of healthy plum leaves and those infected by PPV in the visible and near-infrared spectral ranges. Their application for biotic stress detection helps in monitoring diseases in plants using the different plant spectral properties in these spectral ranges. The strong relationship between the results indicates the applicability of diffuse reflectance and fluorescence techniques for conducting health condition assessments of vegetation and their importance for plant protection practices.

  18. Designing Hyper-V solutions

    CERN Document Server

    Grover, Saurabh


    This book is aimed at IT admins, consultants, and architects alike who wish to deploy, manage, and maintain Hyper-V solutions in organizations of various sizes. You are expected to have a working knowledge of managing Windows Server and a fair understanding of networking and storage concepts.

  19. Hyper-systolic matrix multiplication

    NARCIS (Netherlands)

    Lippert, Th.; Petkov, N.; Palazzari, P.; Schilling, K.

    A novel parallel algorithm for matrix multiplication is presented. It is based on a 1-D hyper-systolic processor abstraction. The procedure can be implemented on all types of parallel systems. (C) 2001 Elsevier Science B,V. All rights reserved.

  20. Hyper Suprime-Cam: conceptual design to introduce spectroscopic mode (United States)

    Komiyama, Yutaka; Tanaka, Yoko; Miyazaki, Satoshi; Kawanomoto, Satoshi; Kamata, Yukiko; Nakaya, Hidehiko; Obuchi, Yoshiyuki; Uraguchi, Fumihiro; Utsumi, Yousuke


    Hyper Suprime-Cam (HSC) is the wide-field CCD camera which is attached to the prime focus of Subaru Telescope. It covers the field of view of 1.5 degree in diameter by 116 2k x 4k fully-depleted CCDs. In this paper, we present the conceptual design of optics and mechanics how to introduce spectroscopic mode to this simple imager HSC. The design is based on the idea that the optical elements such as collimeter, grisms and camera lenses are integrated as a 'filter' of HSC. The incident light is folded by pickup mirror at filter layer and introduced to the filter space. After passing the slit, the incident light is collimated by the collimeter lens and divided into three wavelength ranges by dichroic mirrors. The collimated beam in each wavelength range is fed to the grism and dispersed. The dispersed beam is converged by the camera lens and folded by 45 degree mirror to the direction parallel to the optical axis. The resultant spectra are imaged on the main CCDs on the focal plane. The space allowed for filters is 600 mm in diameter and 42 mm thick, which is very tight but we are able to design spectroscopic optics with some difficulties. The spectral resolution is designed to be more than 1000 and the wavelength coverage is targeted to be 370-1050 nm to realize medium-resolution spectroscopy for various type of objects. We show the optical design of collimeter, grism and camera lenses together with the mechanical layout of the spectroscopic optics.

  1. Level 0 to 1 processing of the imaging Fourier transform spectrometer GLORIA: generation of radiometrically and spectrally calibrated spectra

    Directory of Open Access Journals (Sweden)

    A. Kleinert


    Full Text Available The Gimballed Limb Observer for Radiance Imaging of the Atmosphere (GLORIA is an imaging Fourier transform spectrometer that is capable of operating on various high-altitude research aircraft. It measures the atmospheric emission in the thermal infrared spectral region in limb and nadir geometry. GLORIA consists of a classical Michelson interferometer combined with an infrared camera. The infrared detector has a usable area of 128 × 128 pixels, measuring up to 16 384 interferograms simultaneously. Imaging Fourier transform spectrometers impose a number of challenges with respect to instrument calibration and algorithm development. The optical setup with extremely high optical throughput requires the development of new methods and algorithms for spectral and radiometric calibration. Due to the vast amount of data there is a high demand for scientifically intelligent optimisation of the data processing. This paper outlines the characterisation and processing steps required for the generation of radiometrically and spectrally calibrated spectra. Methods for performance optimisation of the processing algorithm are presented. The performance of the data processing and the quality of the calibrated spectra are demonstrated for measurements collected during the first deployments of GLORIA on aircraft.

  2. Non-destructive detection of dicyandiamide in infant formula powder using multi-spectral imaging coupled with chemometrics. (United States)

    Liu, Changhong; Liu, Wei; Yang, Jianbo; Chen, Ying; Zheng, Lei


    Dicyandiamide (DCD) contamination of milk and milk products has become an urgent and broadly recognised topic as a result of several food safety scares. This study investigated the potential of using multi-spectral imaging (405-970 nm) coupled with chemometrics for detection of DCD in infant formula powder. Partial least squares (PLS), least squares-support vector machines (LS-SVM), and back-propagation neural network (BPNN) were applied to develop quantitative models. Compared with PLS and LS-SVM, BPNN considerably improved the prediction performance with coefficient of determination in prediction (RP2) = 0.935 and 0.873, residual predictive deviation (RPD) = 3.777 and 3.060 for brand 1 and brand 2 of infant formula powders, respectively. Besides, multi-spectral imaging was able to differentiate unadulterated infant formula powder from samples containing 0.01% DCD with no misclassification using BPNN model. The study demonstrated that multi-spectral imaging combined with chemometrics enables rapid and non-destructive detection of DCD in infant formula powder. © 2016 Society of Chemical Industry. © 2016 Society of Chemical Industry.

  3. Performance Evaluation of Hyper Threading Technology ...

    African Journals Online (AJOL)



    Dec 1, 2015 ... This paper describes the Hyper-Threading Technology architecture, and discusses the micro architecture details of Intel's structure. Hyper-Threading Technology is an important addition to. Intel's enterprise product line and has been integrated into a wide variety of products. Intel provides Hyper-Threading ...

  4. The HyperCard Launching Pad. (United States)

    Aufdenspring, Gary; Aufdenspring, Deborah


    Describes how HyperCard software can be used to direct students to databases, applications, and explanations in an online environment. The use of HyperCard with other software is discussed; using HyperCard to set up tutorials is explained; and limitations are addressed, including the amount of memory needed and the speed of the hardware. (LRW)

  5. [Retrieving for chlorophyll-a concentration and suspended substance concentration based on HJ-1A HIS image]. (United States)

    Yang, Ting; Zhang, Hui; Wang, Qiao; Zhao, Qiao-Hua


    Based on geometry correction using ERDAS software and radiation correction using 6S model for HJ-1A hyper-spectrum image (HSI) on May 2 in 2010 and the analysis of spectrum for water data and spectral data of hyper-spectrum image, this paper processes original spectrum data of 28 sample points using method of normalization and method of first-order derivation. Single-band and band combination are selected to establish inversion models of the concentration of chlorophyll-a and solid suspensions. Choosing the model with biggest correlation coefficient, the spatial distribution map of the concentration of chlorophyll-a and solid suspensions content in Taihu Lake is acquired. The research results show: Band-73 of hyper-spectrum image which has been normalized shows the biggest correlation coefficient of the concentration of chlorophyll-a, remote sensing sediment parameter shows the biggest correlation coefficient of the concentration of solid suspensions, the result is consistent with analysis of spectral data of hyper-spectrum image. Average relative errors of predicted and measured values are within 30 percent. Spatial distribution map of water quality is consistent with the result of field surveys. Therefore, based on reference of the analysis of sensitive band of spectrum for water data, HJ-1A hyper-spectrum image can give quantitative estimation of water quality parameters in Taihu Lake.

  6. The Moon Mineralogy (M3) Imaging Spectrometer: Early Assessment of the Spectral, Radiometric, Spatial and Uniformity Properties (United States)

    Green, Robert O.; Pieters, C. M.; Boardman, J.; Barr, D.; Bruce, C.; Bousman, J.; Chatterjee, A.; Eastwood, M.; Essandoh, V.; Geier, S.; hide


    The Moon Mineralogy Mapper's (M3) is a high uniformity and high signal-to-noise ratio NASA imaging spectrometer that is a guest instrument on the Indian Chandrayaan-1 Mission to the Moon. The laboratory measured spectral, radiometric, spatial, and uniformity characteristics of the M3 instrument are given. The M3 imaging spectrometer takes advantage of a suite of critical enabling capabilities to achieve its measurement requirement with a mass of 8 kg, power usage of 15 W, and volume of 25X18X12 cm. The M3 detector and spectrometer are cooled by a multi-stage passive cooler. This paper presents early M3 performance assessment results.

  7. A comparison of dimension reduction methods with application to multi-spectral images of sand used in concrete

    DEFF Research Database (Denmark)

    Clemmensen, Line Katrine Harder; Hansen, M. E.; Ersbøll, Bjarne Kjær


    to the number of observations and, therefore, dimension reductive methods are needed. Furthermore, speed, which is an important consideration, is aided by the use of a small number of variables. On top of that, fewer dimensions tend to give more robust results. Two traditional statistical methods for dimension...... sand types were examined with 20-60 images for each type. To reduce the amount of data, features were extracted from the multi-spectral images; the features were summary statistics on single bands and pairs of bands as well as morphological summaries. The number of features (2,016) is high in relation...

  8. High Fidelity Multi-Mode Hyperspectral Multispectral Imager with Programmable Spectral Resolution Project (United States)

    National Aeronautics and Space Administration — This SBIR Phase II proposal introduces a fast multi-mode hyperspectral-multispectral (MM-HS-MS) sensor with programmable spectral resolution. The sensor brings the...

  9. Characterization and modelling of the spatially- and spectrally-varying point-spread function in hyperspectral imaging systems for computational correction of axial optical aberrations (United States)

    Špiclin, Žiga; Bürmen, Miran; Pernuš, Franjo; Likar, Boštjan


    Spatial resolution of hyperspectral imaging systems can vary significantly due to axial optical aberrations that originate from wavelength-induced index-of-refraction variations of the imaging optics. For systems that have a broad spectral range, the spatial resolution will vary significantly both with respect to the acquisition wavelength and with respect to the spatial position within each spectral image. Variations of the spatial resolution can be effectively characterized as part of the calibration procedure by a local image-based estimation of the pointspread function (PSF) of the hyperspectral imaging system. The estimated PSF can then be used in the image deconvolution methods to improve the spatial resolution of the spectral images. We estimated the PSFs from the spectral images of a line grid geometric caliber. From individual line segments of the line grid, the PSF was obtained by a non-parametric estimation procedure that used an orthogonal series representation of the PSF. By using the non-parametric estimation procedure, the PSFs were estimated at different spatial positions and at different wavelengths. The variations of the spatial resolution were characterized by the radius and the fullwidth half-maximum of each PSF and by the modulation transfer function, computed from images of USAF1951 resolution target. The estimation and characterization of the PSFs and the image deconvolution based spatial resolution enhancement were tested on images obtained by a hyperspectral imaging system with an acousto-optic tunable filter in the visible spectral range. The results demonstrate that the spatial resolution of the acquired spectral images can be significantly improved using the estimated PSFs and image deconvolution methods.

  10. Simultaneous multimodal ophthalmic imaging using swept-source spectrally encoded scanning laser ophthalmoscopy and optical coherence tomography (United States)

    Malone, Joseph D.; El-Haddad, Mohamed T.; Bozic, Ivan; Tye, Logan A.; Majeau, Lucas; Godbout, Nicolas; Rollins, Andrew M.; Boudoux, Caroline; Joos, Karen M.; Patel, Shriji N.; Tao, Yuankai K.


    Scanning laser ophthalmoscopy (SLO) benefits diagnostic imaging and therapeutic guidance by allowing for high-speed en face imaging of retinal structures. When combined with optical coherence tomography (OCT), SLO enables real-time aiming and retinal tracking and provides complementary information for post-acquisition volumetric co-registration, bulk motion compensation, and averaging. However, multimodality SLO-OCT systems generally require dedicated light sources, scanners, relay optics, detectors, and additional digitization and synchronization electronics, which increase system complexity. Here, we present a multimodal ophthalmic imaging system using swept-source spectrally encoded scanning laser ophthalmoscopy and optical coherence tomography (SS-SESLO-OCT) for in vivo human retinal imaging. SESLO reduces the complexity of en face imaging systems by multiplexing spatial positions as a function of wavelength. SESLO image quality benefited from single-mode illumination and multimode collection through a prototype double-clad fiber coupler, which optimized scattered light throughput and reduce speckle contrast while maintaining lateral resolution. Using a shared 1060 nm swept-source, shared scanner and imaging optics, and a shared dual-channel high-speed digitizer, we acquired inherently co-registered en face retinal images and OCT cross-sections simultaneously at 200 frames-per-second. PMID:28101411

  11. Simultaneous PET/MRI with (13)C magnetic resonance spectroscopic imaging (hyperPET): phantom-based evaluation of PET quantification. (United States)

    Hansen, Adam E; Andersen, Flemming L; Henriksen, Sarah T; Vignaud, Alexandre; Ardenkjaer-Larsen, Jan H; Højgaard, Liselotte; Kjaer, Andreas; Klausen, Thomas L


    Integrated PET/MRI with hyperpolarized (13)C magnetic resonance spectroscopic imaging ((13)C-MRSI) offers simultaneous, dual-modality metabolic imaging. A prerequisite for the use of simultaneous imaging is the absence of interference between the two modalities. This has been documented for a clinical whole-body system using simultaneous (1)H-MRI and PET but never for (13)C-MRSI and PET. Here, the feasibility of simultaneous PET and (13)C-MRSI as well as hyperpolarized (13)C-MRSI in an integrated whole-body PET/MRI hybrid scanner is evaluated using phantom experiments. Combined PET and (13)C-MRSI phantoms including a NEMA [(18)F]-FDG phantom, (13)C-acetate and (13)C-urea sources, and hyperpolarized (13)C-pyruvate were imaged repeatedly with PET and/or (13)C-MRSI. Measurements evaluated for interference effects included PET activity values in the largest sphere and a background region; total number of PET trues; and (13)C-MRSI signal-to-noise ratio (SNR) for urea and acetate phantoms. Differences between measurement conditions were evaluated using t tests. PET and (13)C-MRSI data acquisition could be performed simultaneously without any discernible artifacts. The average difference in PET activity between acquisitions with and without simultaneous (13)C-MRSI was 0.83 (largest sphere) and -0.76 % (background). The average difference in net trues was -0.01 %. The average difference in (13)C-MRSI SNR between acquisitions with and without simultaneous PET ranged from -2.28 to 1.21 % for all phantoms and measurement conditions. No differences were significant. The system was capable of (13)C-MRSI of hyperpolarized (13)C-pyruvate. Simultaneous PET and (13)C-MRSI in an integrated whole-body PET/MRI hybrid scanner is feasible. Phantom experiments showed that possible interference effects introduced by acquiring data from the two modalities simultaneously are small and non-significant. Further experiments can now investigate the benefits of simultaneous PET and

  12. Remote Sensing Image Fusion at the Segment Level Using a Spatially-Weighted Approach: Applications for Land Cover Spectral Analysis and Mapping

    Directory of Open Access Journals (Sweden)

    Brian Johnson


    Full Text Available Segment-level image fusion involves segmenting a higher spatial resolution (HSR image to derive boundaries of land cover objects, and then extracting additional descriptors of image segments (polygons from a lower spatial resolution (LSR image. In past research, an unweighted segment-level fusion (USF approach, which extracts information from a resampled LSR image, resulted in more accurate land cover classification than the use of HSR imagery alone. However, simply fusing the LSR image with segment polygons may lead to significant errors due to the high level of noise in pixels along the segment boundaries (i.e., pixels containing multiple land cover types. To mitigate this, a spatially-weighted segment-level fusion (SWSF method was proposed for extracting descriptors (mean spectral values of segments from LSR images. SWSF reduces the weights of LSR pixels located on or near segment boundaries to reduce errors in the fusion process. Compared to the USF approach, SWSF extracted more accurate spectral properties of land cover objects when the ratio of the LSR image resolution to the HSR image resolution was greater than 2:1, and SWSF was also shown to increase classification accuracy. SWSF can be used to fuse any type of imagery at the segment level since it is insensitive to spectral differences between the LSR and HSR images (e.g., different spectral ranges of the images or different image acquisition dates.

  13. Rapid and non-destructive determination of rancidity levels in butter cookies by multi-spectral imaging. (United States)

    Xia, Qing; Liu, Changhong; Liu, Jinxia; Pan, Wenjuan; Lu, Xuzhong; Yang, Jianbo; Chen, Wei; Zheng, Lei


    Rancidity is an important attribute for quality assessment of butter cookies, while traditional methods for rancidity measurement are usually laborious, destructive and prone to operational error. In the present paper, the potential of applying multi-spectral imaging (MSI) technology with 19 wavelengths in the range of 405-970 nm to evaluate the rancidity in butter cookies was investigated. Moisture content, acid value and peroxide value were determined by traditional methods and then related with the spectral information by partial least squares regression (PLSR) and back-propagation artificial neural network (BP-ANN). The optimal models for predicting moisture content, acid value and peroxide value were obtained by PLSR. The correlation coefficient (r) obtained by PLSR models revealed that MSI had a perfect ability to predict moisture content (r = 0.909), acid value (r = 0.944) and peroxide value (r = 0.971). The study demonstrated that the rancidity level of butter cookies can be continuously monitored and evaluated in real-time by the multi-spectral imaging, which is of great significance for developing online food safety monitoring solutions. © 2015 Society of Chemical Industry.

  14. Spectral Computed Tomography Imaging of Gastric Schwannoma and Gastric Stromal Tumor. (United States)

    Liu, Jianli; Chai, Yanjun; Zhou, Junlin; Dong, Chi; Zhang, Wenjuan; Liu, Bin

    Gastric schwannomas (GSs) and gastrointestinal stromal tumors (GSTs) are grossly similar submucosal neoplasms with different prognoses. We explored the value of spectral computed tomography (CT) to distinguish between them. Patients diagnosed with GS or GST at Lanzhou University Second Hospital, China, between May 2013 and June 2015 were included retrospectively. The subjects underwent spectral CT examination before surgery and had histologically confirmed diagnosis of GS or GST. Twelve patients with GS (3 men; 9 women; mean [SD] age, 47.0 [11.5] years) and 20 with GST (7 men; 13 women; mean [SD] age, 54.7 [9.9]) showed significant differences in terms of arterial phase (AP) at 70 keV (P < 0.001), portal phase (PP) at 70 keV (P = 0.002), AP iodine concentration, PP iodine concentration, AP water concentration, AP slope of spectral curve, and PP slope of spectral curve (all P < 0.001). Spectral CT may be useful for noninvasive diagnosis of submucosal tumors.

  15. Multiplex immunoassay for persistent organic pollutants in tilapia: Comparison of imaging- and flow cytometry-based platforms using spectrally encoded paramagnetic microspheres (United States)

    Recent developments in spectrally encoded microspheres (SEMs)-based technologies provide high multiplexing possibilities. Most SEMs-based assays required a flow cytometer with sophisticated fluidics and optics. The new imaging superparamagnetic SEMs-based platform transports SEMs with considerably ...

  16. Seismic imaging and inversion based on spectral-element and adjoint methods (United States)

    Luo, Yang

    One of the most important topics in seismology is to construct detailed tomographic images beneath the surface, which can be interpreted geologically and geochemically to understand geodynamic processes happening in the interior of the Earth. Classically, these images are usually produced based upon linearized traveltime anomalies involving several particular seismic phases, whereas nonlinear inversion fitting synthetic seismograms and recorded signals based upon the adjoint method becomes more and more favorable. The adjoint tomography, also referred to as waveform inversion, is advantageous over classical techniques in several aspects, such as better resolution, while it also has several drawbacks, e.g., slow convergence and lack of quantitative resolution analysis. In this dissertation, we focus on solving these remaining issues in adjoint tomography, from a theoretical perspective and based upon synthetic examples. To make the thesis complete by itself and easy to follow, we start from development of the spectral-element method, a wave equation solver that enables access to accurate synthetic seismograms for an arbitrary Earth model, and the adjoint method, which provides Frechet derivatives, also named as sensitivity kernels, of a given misfit function. Then, the sensitivity kernels for waveform misfit functions are illustrated, using examples from exploration seismology, in other words, for migration purposes. Next, we show step by step how these gradient derivatives may be utilized in minimizing the misfit function, which leads to iterative refinements on the Earth model. Strategies needed to speed up the inversion, ensure convergence and improve resolution, e.g., preconditioning, quasi-Newton methods, multi-scale measurements and combination of traveltime and waveform misfit functions, are discussed. Through comparisons between the adjoint tomography and classical tomography, we address the resolution issue by calculating the point-spread function, the

  17. In vivo spectral imaging of different cell types in the small intestine