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Sample records for hybrid technique compares

  1. Comparative genomic hybridization: practical guidelines.

    NARCIS (Netherlands)

    Jeuken, J.W.M.; Sprenger, S.H.; Wesseling, P.

    2002-01-01

    Comparative genomic hybridization (CGH) is a technique used to identify copy number changes throughout a genome. Until now, hundreds of CGH studies have been published reporting chromosomal imbalances in a large variety of human neoplasms. Additionally, technical improvements of specific steps in a

  2. A comparative analysis of different hybrid MCDM techniques considering a case of selection of 3D printers

    Directory of Open Access Journals (Sweden)

    Debapriyo Paul

    2015-07-01

    Full Text Available A multitude of techniques fall under the domain of Multi- Criteria Decision Making (MCDM which is used to select the best alternative among the available ones. The objective of this paper is to compare some of these techniques with respect to the problem of selection of 3D printers, which is associated with multiple attributes. The weights of the criteria were determined using analytical network process (ANP. Next, the alternatives were ranked using three different MCDM techniques- 1.TOPSIS which ranks alternatives having the shortest distance to the ideal solution as well as the greatest distance from the negative-ideal solution 2. Deng’s Similarity based Approach where the most preferred alternative should have the highest degree of similarity to the positive ideal solution and the lowest degree of similarity to the negative-ideal solution and 3.PROMETHEE and GAIA. The solutions for each of these three cases were analyzed thoroughly, and reasons for any deviations were discussed.

  3. Wind Speed Forecasting Using Hybrid Wavelet Transform—ARMA Techniques

    Directory of Open Access Journals (Sweden)

    Diksha Kaur

    2015-01-01

    Full Text Available The objective of this paper is to develop a novel wind speed forecasting technique, which produces more accurate prediction. The Wavelet Transform (WT along with the Auto Regressive Moving Average (ARMA is chosen to form a hybrid whose combination is expected to give minimum Mean Absolute Prediction Error (MAPE. A simulation study has been conducted by comparing the forecasting results using the Wavelet-ARMA with the ARMA and Artificial Neural Network (ANN-Ensemble Kalman Filter (EnKF hybrid technique to verify the effectiveness of the proposed hybrid method. Results of the proposed hybrid show significant improvements in the forecasting error.

  4. HYBRID INTERNET TRAFFIC CLASSIFICATION TECHNIQUE1

    Institute of Scientific and Technical Information of China (English)

    Li Jun; Zhang Shunyi; Lu Yanqing; Yan Junrong

    2009-01-01

    Accurate and real-time classification of network traffic is significant to network operation and management such as QoS differentiation, traffic shaping and security surveillance. However, with many newly emerged P2P applications using dynamic port numbers, masquerading techniques, and payload encryption to avoid detection, traditional classification approaches turn to be ineffective. In this paper, we present a layered hybrid system to classify current Internet traffic, motivated by variety of network activities and their requirements of traffic classification. The proposed method could achieve fast and accurate traffic classification with low overheads and robustness to accommodate both known and unknown/encrypted applications. Furthermore, it is feasible to be used in the context of real-time traffic classification. Our experimental results show the distinct advantages of the proposed classification system, compared with the one-step Machine Learning (ML) approach.

  5. Detection of chromosomal abnormalities by comparative genomic hybridization.

    Science.gov (United States)

    Lapierre, Jean-Michel; Tachdjian, Gérard

    2005-04-01

    Comparative genomic hybridization (CGH) is a modified in-situ hybridization technique. In this type of analysis, two differentially labeled genomic DNAs (study and reference) are cohybridized to normal metaphase spreads or to microarray. Chromosomal locations of copy number changes in the DNA segments of the study genome are revealed by a variable fluorescence intensity ratio along each target chromosome. Thus, CGH allows detection and mapping of DNA sequence copy differences between two genomes in a single experiment. Since its development, comparative genomic hybridization has been applied mostly as a research tool in the field of cancer cytogenetics to identify genetic changes in many previously unknown regions. It is also a powerful tool for detection and identification of unbalanced chromosomal abnormalities in prenatal, postnatal and preimplantation diagnostics. The development of comparative genomic hybridization and increase in resolution analysis by using the microarray-based technique offer new information on chromosomal pathologies and thus better management of patients.

  6. Comparative genomic hybridization in clinical cytogenetics

    Energy Technology Data Exchange (ETDEWEB)

    Bryndorf, T.; Kirchhoff, M.; Rose, H. [and others

    1995-11-01

    We report the results of applying comparative genomic hybridization (CGH) in a cytogenetic service laboratory for (1) determination of the origin of extra and missing chromosomal material in intricate cases of unbalanced aberrations and (2) detection of common prenatal numerical chromosome aberrations. A total of 11 fetal samples were analyzed. Seven cases of complex unbalanced aberrations that could not be identified reliably by conventional cytogenetics were successfully resolved by CGH analysis. CGH results were validated by using FISH with chromosome-specific probes. Four cases representing common prenatal numerical aberrations (trisomy 21, 18, and 13 and monosomy X) were also successfully diagnosed by CGH. We conclude that CGH is a powerful adjunct to traditional cytogenetic techniques that makes it possible to solve clinical cases of intricate unbalanced aberrations in a single hybridization. CGH may also be a useful adjunct to screen for euchromatic involvement in marker chromosomes. Further technical development may render CGH applicable for routine aberration screening. 16 refs., 4 figs., 2 tabs.

  7. Comparing techniques for pterygium surgery

    Directory of Open Access Journals (Sweden)

    Atilla Alpay

    2008-09-01

    Full Text Available Atilla Alpay, Suat Hayri Ugurbas, Berktug ErdoganDepartment of Ophthalmology, Faculty of Medicine, Zonguldak, Karaelmas University, Zonguldak, TurkeyPurpose: To compare various techniques of pterygium surgery including bare sclera, intraoperative mitomycin C application, conjunctival flap reconstruction, and conjunctival autografting technique.Methods: This study is designed to compare 4 currently used techniques in order to determine the complication and recurrence rates after pterygium exision. Included in the study were 77 eyes from 60 patients. Bare sclera technique was used to treat 21 primary pterygia; mitomycin C was used to treat 20 (16 primary, 4 recurrent pterygia; 18 (17 primary, 1 recurrent pterygia were treated by conjuntival flap reconstruction; and 18 (9 primary, 9 recurrent pterygia were treated by conjunctival autografting technique. All patients who underwent surgery were followed up for between 6 months and 2 years.Results: Eight recurrences (38.09% were observed in the bare sclera group whereas there were 5 (25% recurrences in the mitomycin C group. In the conjunctival flap reconstruction group, 6 (33.33% recurrences were detected. In the conjunctival autografting group, 3 recurrences were  observed. There were no major complications threatening visual ability in the surgical patients.Conclusion: A comparison of the groups demonstrated that the recurrence rate was highest in the bare sclera group, and lowest in conjunctival autografting and mitomycin C treatment groups respectively. Although the conjunctival autografting technique is a more difficult and time consuming technique than the others, cosmetic and surgical results were found to be superior. We advise conjunctival autografting for the treatment of pterygium in view of the high recurrence rates of other techniques, and the possible complications of mitomycin C treatment for benign disease.Keywords: pterygium, comparing, techniques, mitomycin C

  8. Hybrid Membranes of PLLA/Collagen for Bone Tissue Engineering: A Comparative Study of Scaffold Production Techniques for Optimal Mechanical Properties and Osteoinduction Ability

    Directory of Open Access Journals (Sweden)

    Flávia Gonçalves

    2015-01-01

    Full Text Available Synthetic and natural polymer association is a promising tool in tissue engineering. The aim of this study was to compare five methodologies for producing hybrid scaffolds for cell culture using poly-l-lactide (PLLA and collagen: functionalization of PLLA electrospun by (1 dialkylamine and collagen immobilization with glutaraldehyde and by (2 hydrolysis and collagen immobilization with carbodiimide chemistry; (3 co-electrospinning of PLLA/chloroform and collagen/hexafluoropropanol (HFP solutions; (4 co-electrospinning of PLLA/chloroform and collagen/acetic acid solutions and (5 electrospinning of a co-solution of PLLA and collagen using HFP. These materials were evaluated based on their morphology, mechanical properties, ability to induce cell proliferation and alkaline phosphatase activity upon submission of mesenchymal stem cells to basal or osteoblastic differentiation medium (ODM. Methods (1 and (2 resulted in a decrease in mechanical properties, whereas methods (3, (4 and (5 resulted in materials of higher tensile strength and osteogenic differentiation. Materials yielded by methods (2, (3 and (5 promoted osteoinduction even in the absence of ODM. The results indicate that the scaffold based on the PLLA/collagen blend exhibited optimal mechanical properties and the highest capacity for osteodifferentiation and was the best choice for collagen incorporation into PLLA in bone repair applications.

  9. Comparative genomic hybridization: Detection of segmental aneusomies

    Energy Technology Data Exchange (ETDEWEB)

    Cronin, J.E.; Magrane, G.G.; Gray, J.W. [Univ. of California, San Francisco, CA (United States)] [and others

    1994-09-01

    Comparative genomic hybridization (CGH) has been used successfully to detect whole chromosome and segmental aneusomies. However, its sensitivity for detection of segmental aneusomies is still not well known. We present here an analysis of CGH sensitivity with emphasis on detection of abnormalities commonly found during pre-and neo-natal diagnosis. CGH is performed by hybridizing green and red fluorescing test and normal DNA samples, respectively, to normal metaphase spreads and measuring green:red fluorescence ratios along all chromosomes. The ratios are normalized such that 2 copies of a normal chromosome region in the test sample gives a ratio of 1.0. Alterations in test vs. control gene copy number range from 1.5 [trisomy] to 0.5 [monosomy]. Clinical samples analyzed included Wolf Hirschhorn (4p-), Cri du Chat (5p-) and DiGeorge (22q-). In addition, 7 cell lines with chromosome 21 segmental aneusomies were analyzed. These included 3 with terminal duplications, 1 with a terminal deletion, 1 with an interstitial deletion and 2 with interstitial amplifications. The DiGeorge deletion was the only deletion not deleted by CGH. This is not surprising as standard G banding does not routinely detect this 1-2 megabase deletion. The 4p- and 5p- monosomies were detected and breakpoints correctly assigned prospectively. Proximal alterations involving 21q22.11 are unambiguously defined. Specifically, two interstitial aneusomies involving this region are detected. Studies involving late prophase chromosome normal spreads gave identical breakpoints. Thus, analysis of extended chromosomes did not improve the sensitivity of the technique. Taken together, these data suggest that CGH can detect segmental aneusomies greater than 8 megabases in extent. Smaller aneusomies can, at times, be detected. Work is now underway to modify the analysis software to increase sensitivity and to decrease the amount of material needed for analysis.

  10. Technique for Measuring Hybrid Electronic Component Reliability

    Energy Technology Data Exchange (ETDEWEB)

    Green, C.C.; Hernandez, C.L.; Hosking, F.M.; Robinson, D.; Rutherford, B.; Uribe, F.

    1999-01-01

    Materials compatibility studies of aged, engineered materials and hardware are critical to understanding and predicting component reliability, particularly for systems with extended stockpile life requirements. Nondestructive testing capabilities for component reliability would significantly enhance lifetime predictions. For example, if the detection of crack propagation through a solder joint can be demonstrated, this technique could be used to develop baseline information to statistically determine solder joint lifelengths. This report will investigate high frequency signal response techniques for nondestructively evaluating the electrical behavior of thick film hybrid transmission lines.

  11. Comparing techniques for pterygium surgery.

    Science.gov (United States)

    Alpay, Atilla; Uğurbaş, Suat Hayri; Erdoğan, Berktuğ

    2009-01-01

    To compare various techniques of pterygium surgery including bare sclera, intraoperative mitomycin C application, conjunctival flap reconstruction, and conjunctival autografting technique. This study is designed to compare 4 currently used techniques in order to determine the complication and recurrence rates after pterygium exision. Included in the study were 77 eyes from 60 patients. Bare sclera technique was used to treat 21 primary pterygia;mitomycin C was used to treat 20 (16 primary, 4 recurrent) pterygia;18 (17 primary, 1 recurrent) pterygia were treated by conjuntival flap reconstruction;and 18 (9 primary, 9 recurrent) pterygia were treated by conjunctival autografting technique. All patients who underwent surgery were followed up for between 6 months and 2 years. Eight recurrences (38.09%) were observed in the bare sclera group whereas there were 5 (25%) recurrences in the mitomycin C group. In the conjunctival flap reconstruction group, 6 (33.33%) recurrences were detected. In the conjunctival autografting group, 3 recurrences were observed. There were no major complications threatening visual ability in the surgical patients. A comparison of the groups demonstrated that the recurrence rate was highest in the bare sclera group, and lowest in conjunctival autografting and mitomycin C treatment groups respectively. Although the conjunctival autografting technique is a more difficult and time consuming technique than the others, cosmetic and surgical results were found to be superior. We advise conjunctival autografting for the treatment of pterygium in view of the high recurrence rates of other techniques, and the possible complications of mitomycin C treatment for benign disease.

  12. Hybrid ultrasound imaging techniques (fusion imaging).

    Science.gov (United States)

    Sandulescu, Daniela Larisa; Dumitrescu, Daniela; Rogoveanu, Ion; Saftoiu, Adrian

    2011-01-07

    Visualization of tumor angiogenesis can facilitate non-invasive evaluation of tumor vascular characteristics to supplement the conventional diagnostic imaging goals of depicting tumor location, size, and morphology. Hybrid imaging techniques combine anatomic [ultrasound, computed tomography (CT), and/or magnetic resonance imaging (MRI)] and molecular (single photon emission CT and positron emission tomography) imaging modalities. One example is real-time virtual sonography, which combines ultrasound (grayscale, colour Doppler, or dynamic contrast harmonic imaging) with contrast-enhanced CT/MRI. The benefits of fusion imaging include an increased diagnostic confidence, direct comparison of the lesions using different imaging modalities, more precise monitoring of interventional procedures, and reduced radiation exposure.

  13. Wind Speed Forecasting Using Hybrid Wavelet Transform—ARMA Techniques

    OpenAIRE

    Diksha Kaur; Tek Tjing Lie; Nirmal K. C. Nair; Brice Vallès

    2015-01-01

    The objective of this paper is to develop a novel wind speed forecasting technique, which produces more accurate prediction. The Wavelet Transform (WT) along with the Auto Regressive Moving Average (ARMA) is chosen to form a hybrid whose combination is expected to give minimum Mean Absolute Prediction Error (MAPE). A simulation study has been conducted by comparing the forecasting results using the Wavelet-ARMA with the ARMA and Artificial Neural Network (ANN)-Ensemble Kalman Filter (EnKF) hy...

  14. Hybrid ultrasound imaging techniques(fusion imaging)

    Institute of Scientific and Technical Information of China (English)

    Daniela Larisa Sandulescu; Daniela Dumitrescu; Ion Rogoveanu; Adrian Saftoiu

    2011-01-01

    Visualization of tumor angiogenesis can facilitate noninvasive evaluation of tumor vascular characteristics to supplement the conventional diagnostic imaging goals of depicting tumor location,size,and morphology.Hybrid imaging techniques combine anatomic [ultrasound,computed tomography(CT),and/or magnetic resonance imaging(MRI)] and molecular(single photon emission CT and positron emission tomography)imaging modalities.One example is real-time virtual sonography,which combines ultrasound(grayscale,colour Doppler,or dynamic contrast harmonic imaging)with contrast-enhanced CT/MRI.The benefits of fusion imaging include an increased diagnostic confidence,direct comparison of the lesions using different imaging modalities,more precise monitoring of interventional procedures,and reduced radiation exposure.

  15. Cytogenetic analysis from DNA by comparative genomic hybridization.

    Science.gov (United States)

    Tachdjian, G; Aboura, A; Lapierre, J M; Viguié, F

    2000-01-01

    Comparative genomic hybridization (CGH) is a modified in situ hybridization technique which allows detection and mapping of DNA sequence copy differences between two genomes in a single experiment. In CGH analysis, two differentially labelled genomic DNA (study and reference) are co-hybridized to normal metaphase spreads. Chromosomal locations of copy number changes in the DNA segments of the study genome are revealed by a variable fluorescence intensity ratio along each target chromosome. Since its development, CGH has been applied mostly as a research tool in the field of cancer cytogenetics to identify genetic changes in many previously unknown regions. CGH may also have a role in clinical cytogenetics for detection and identification of unbalanced chromosomal abnormalities.

  16. A New Generic Taxonomy on Hybrid Malware Detection Technique

    CERN Document Server

    Robiah, Y; Zaki, M Mohd; Shahrin, S; Faizal, M A; Marliza, R

    2009-01-01

    Malware is a type of malicious program that replicate from host machine and propagate through network. It has been considered as one type of computer attack and intrusion that can do a variety of malicious activity on a computer. This paper addresses the current trend of malware detection techniques and identifies the significant criteria in each technique to improve malware detection in Intrusion Detection System (IDS). Several existing techniques are analyzing from 48 various researches and the capability criteria of malware detection technique have been reviewed. From the analysis, a new generic taxonomy of malware detection technique have been proposed named Hybrid Malware Detection Technique (Hybrid MDT) which consists of Hybrid Signature and Anomaly detection technique and Hybrid Specification based and Anomaly detection technique to complement the weaknesses of the existing malware detection technique in detecting known and unknown attack as well as reducing false alert before and during the intrusion ...

  17. Resonant frequency calculations using a hybrid perturbation-Galerkin technique

    Science.gov (United States)

    Geer, James F.; Andersen, Carl M.

    1991-01-01

    A two-step hybrid perturbation Galerkin technique is applied to the problem of determining the resonant frequencies of one or several degrees of freedom nonlinear systems involving a parameter. In one step, the Lindstedt-Poincare method is used to determine perturbation solutions which are formally valid about one or more special values of the parameter (e.g., for large or small values of the parameter). In step two, a subset of the perturbation coordinate functions determined in step one is used in Galerkin type approximation. The technique is illustrated for several one degree of freedom systems, including the Duffing and van der Pol oscillators, as well as for the compound pendulum. For all of the examples considered, it is shown that the frequencies obtained by the hybrid technique using only a few terms from the perturbation solutions are significantly more accurate than the perturbation results on which they are based, and they compare very well with frequencies obtained by purely numerical methods.

  18. A Comparative of business process modelling techniques

    Science.gov (United States)

    Tangkawarow, I. R. H. T.; Waworuntu, J.

    2016-04-01

    In this era, there is a lot of business process modeling techniques. This article is the research about differences of business process modeling techniques. For each technique will explain about the definition and the structure. This paper presents a comparative analysis of some popular business process modelling techniques. The comparative framework is based on 2 criteria: notation and how it works when implemented in Somerleyton Animal Park. Each technique will end with the advantages and disadvantages. The final conclusion will give recommend of business process modeling techniques that easy to use and serve the basis for evaluating further modelling techniques.

  19. Ultra Wide Band localization and tracking hybrid technique using VRTs

    Directory of Open Access Journals (Sweden)

    Mohd Shamian Zianal

    2012-12-01

    Full Text Available This research presents hybrid radar tracking technique consisting of Time Of Arrival (TOA and Received Signal Strength (RSS techniques. This hybrid design increases efficiency, accuracy and sensitivity of radar system. The radar used in this research is multistatic radar with one transmitter and three receivers. One common drawback in RSS and TOA techniques is high level synchronization in transmitter and receivers. The hybrid design also suffers from transmitter-receiver synchronization. To overcome TX-RX synchronization problem Virtual Reference Tags (VRTs are used. These tags are virtually mapped over the surveillance area giving radar design different reference points from which it can accurately locate intruder and monitor its movements. Also four cases of different

  20. A Hybrid IMRT/VMAT Technique for the Treatment of Nasopharyngeal Cancer

    Directory of Open Access Journals (Sweden)

    Nan Zhao

    2015-01-01

    Full Text Available Hybrid IMRT/VMAT technique which combined intensity modulated radiotherapy (IMRT and volumetric modulated arc therapy (VMAT was developed for the treatment of nasopharyngeal cancer (NPC. Two-full-arc VMAT (2ARC-VMAT, 9-field IMRT (9F-IMRT, and Hybrid IMRT/VMAT plans for NPC were compared in terms of the dosimetric quality, sparing of organs at risk (OARs, and delivery efficiency. The Hybrid IMRT/VMAT technique can improve the target dose homogeneity and conformity compared with 9F-IMRT and 2ARC-VMAT. It can reduce the dose delivered to the TMJ, mandible, temporal lobe, and unspecified tissue with fewer MUs compared with 9F-IMRT and dose delivered to parotids, brainstem, and spinal cord compared with 2ARC-VMAT technique. The mean delivery time of Hybrid plans was shorter than that of 9F-IMRT plans (408 s versus 812 s; P=0.00 and longer than that of 2ARC-VMAT plans (408 s versus 179 s; P=0.00. Hybrid IMRT/VMAT technique could be a viable radiotherapy technique with better plan quality.

  1. A hybrid IMRT/VMAT technique for the treatment of nasopharyngeal cancer.

    Science.gov (United States)

    Zhao, Nan; Yang, Ruijie; Jiang, Yuliang; Tian, Suqing; Guo, Fuxin; Wang, Junjie

    2015-01-01

    Hybrid IMRT/VMAT technique which combined intensity modulated radiotherapy (IMRT) and volumetric modulated arc therapy (VMAT) was developed for the treatment of nasopharyngeal cancer (NPC). Two-full-arc VMAT (2ARC-VMAT), 9-field IMRT (9F-IMRT), and Hybrid IMRT/VMAT plans for NPC were compared in terms of the dosimetric quality, sparing of organs at risk (OARs), and delivery efficiency. The Hybrid IMRT/VMAT technique can improve the target dose homogeneity and conformity compared with 9F-IMRT and 2ARC-VMAT. It can reduce the dose delivered to the TMJ, mandible, temporal lobe, and unspecified tissue with fewer MUs compared with 9F-IMRT and dose delivered to parotids, brainstem, and spinal cord compared with 2ARC-VMAT technique. The mean delivery time of Hybrid plans was shorter than that of 9F-IMRT plans (408 s versus 812 s; P=0.00) and longer than that of 2ARC-VMAT plans (408 s versus 179 s; P=0.00). Hybrid IMRT/VMAT technique could be a viable radiotherapy technique with better plan quality.

  2. A Hybrid IMRT/VMAT Technique for the Treatment of Nasopharyngeal Cancer

    Science.gov (United States)

    Zhao, Nan; Yang, Ruijie; Jiang, Yuliang; Tian, Suqing; Guo, Fuxin; Wang, Junjie

    2015-01-01

    Hybrid IMRT/VMAT technique which combined intensity modulated radiotherapy (IMRT) and volumetric modulated arc therapy (VMAT) was developed for the treatment of nasopharyngeal cancer (NPC). Two-full-arc VMAT (2ARC-VMAT), 9-field IMRT (9F-IMRT), and Hybrid IMRT/VMAT plans for NPC were compared in terms of the dosimetric quality, sparing of organs at risk (OARs), and delivery efficiency. The Hybrid IMRT/VMAT technique can improve the target dose homogeneity and conformity compared with 9F-IMRT and 2ARC-VMAT. It can reduce the dose delivered to the TMJ, mandible, temporal lobe, and unspecified tissue with fewer MUs compared with 9F-IMRT and dose delivered to parotids, brainstem, and spinal cord compared with 2ARC-VMAT technique. The mean delivery time of Hybrid plans was shorter than that of 9F-IMRT plans (408 s versus 812 s; P = 0.00) and longer than that of 2ARC-VMAT plans (408 s versus 179 s; P = 0.00). Hybrid IMRT/VMAT technique could be a viable radiotherapy technique with better plan quality. PMID:25688371

  3. Comparing Face Detection and Recognition Techniques

    OpenAIRE

    Korra, Jyothi

    2016-01-01

    This paper implements and compares different techniques for face detection and recognition. One is find where the face is located in the images that is face detection and second is face recognition that is identifying the person. We study three techniques in this paper: Face detection using self organizing map (SOM), Face recognition by projection and nearest neighbor and Face recognition using SVM.

  4. HybridArc: A novel radiation therapy technique combining optimized dynamic arcs and intensity modulation

    Energy Technology Data Exchange (ETDEWEB)

    Robar, James L., E-mail: james.robar@cdha.nshealth.ca [Department of Radiation Oncology, Dalhousie University, Halifax (Canada); Department of Physics and Atmospheric Science, Dalhousie University, Halifax (Canada); Thomas, Christopher [Department of Radiation Oncology, Dalhousie University, Halifax (Canada)

    2012-01-01

    This investigation focuses on possible dosimetric and efficiency advantages of HybridArc-a novel treatment planning approach combining optimized dynamic arcs with intensity-modulated radiation therapy (IMRT) beams. Application of this technique to two disparate sites, complex cranial tumors, and prostate was examined. HybridArc plans were compared with either dynamic conformal arc (DCA) or IMRT plans to determine whether HybridArc offers a synergy through combination of these 2 techniques. Plans were compared with regard to target volume dose conformity, target volume dose homogeneity, sparing of proximal organs at risk, normal tissue sparing, and monitor unit (MU) efficiency. For cranial cases, HybridArc produced significantly improved dose conformity compared with both DCA and IMRT but did not improve sparing of the brainstem or optic chiasm. For prostate cases, conformity was improved compared with DCA but not IMRT. Compared with IMRT, the dose homogeneity in the planning target volume was improved, and the maximum doses received by the bladder and rectum were reduced. Both arc-based techniques distribute peripheral dose over larger volumes of normal tissue compared with IMRT, whereas HybridArc involved slightly greater volumes of normal tissues compared with DCA. Compared with IMRT, cranial cases required 38% more MUs, whereas for prostate cases, MUs were reduced by 7%. For cranial cases, HybridArc improves dose conformity to the target. For prostate cases, dose conformity and homogeneity are improved compared with DCA and IMRT, respectively. Compared with IMRT, whether required MUs increase or decrease with HybridArc was site-dependent.

  5. A hybrid localization technique for patient tracking.

    Science.gov (United States)

    Rodionov, Denis; Kolev, George; Bushminkin, Kirill

    2013-01-01

    Nowadays numerous technologies are employed for tracking patients and assets in hospitals or nursing homes. Each of them has advantages and drawbacks. For example, WiFi localization has relatively good accuracy but cannot be used in case of power outage or in the areas with poor WiFi coverage. Magnetometer positioning or cellular network does not have such problems but they are not as accurate as localization with WiFi. This paper describes technique that simultaneously employs different localization technologies for enhancing stability and average accuracy of localization. The proposed algorithm is based on fingerprinting method paired with data fusion and prediction algorithms for estimating the object location. The core idea of the algorithm is technology fusion using error estimation methods. For testing accuracy and performance of the algorithm testing simulation environment has been implemented. Significant accuracy improvement was showed in practical scenarios.

  6. New techniques for emulsion analysis in a hybrid experiment

    Energy Technology Data Exchange (ETDEWEB)

    Kodama, K. (Aichi University of Education, Kariya 448 (Japan)); Ushida, N. (Aichi University of Education, Kariya 448 (Japan)); Mokhtarani, A. (University of California (Davis), Davis, CA 95616 (United States)); Paolone, V.S. (University of California (Davis), Davis, CA 95616 (United States)); Volk, J.T. (University of California (Davis), Davis, CA 95616 (United States)); Wilcox, J.O. (University of California (Davis), Davis, CA 95616 (United States)); Yager, P.M. (University of California (Davis), Davis, CA 95616 (United States)); Edelstein, R.M. (Carnegie-Mellon University, Pittsburgh, PA 15213 (United States)); Freyberger, A.P. (Carnegie-Mellon University, Pittsburgh, PA 15213 (United States)); Gibaut, D.B. (Carnegie-Mellon University, Pittsburgh, PA 15213 (United States)); Lipton, R.J. (Carnegie-Mellon University, Pittsburgh, PA 15213 (United States)); Nichols, W.R. (Carnegie-Mellon University, Pittsburgh, PA 15213 (United States)); Potter, D.M. (Carnegie-Mellon Univers

    1994-08-01

    A new method, called graphic scanning, was developed by the Nagoya University Group for emulsion analysis in a hybrid experiment. This method enhances both speed and reliability of emulsion analysis. Details of the application of this technique to the analysis of Fermilab experiment E653 are described. ((orig.))

  7. A Hybridized Centroid Technique for 3D Molodensky-Badekas ...

    African Journals Online (AJOL)

    Richannan

    two new hybrid centroid techniques known as the harmonic-quadratic mean and arithmetic- ... was subsequently involved in triangulation nets with other trigonometric ..... The functional relation that is used to compute the TLS solution is given by ..... mathematical models is an approximation of reality, hence it is worth noting ...

  8. Resizing Technique-Based Hybrid Genetic Algorithm for Optimal Drift Design of Multistory Steel Frame Buildings

    Directory of Open Access Journals (Sweden)

    Hyo Seon Park

    2014-01-01

    Full Text Available Since genetic algorithm-based optimization methods are computationally expensive for practical use in the field of structural optimization, a resizing technique-based hybrid genetic algorithm for the drift design of multistory steel frame buildings is proposed to increase the convergence speed of genetic algorithms. To reduce the number of structural analyses required for the convergence, a genetic algorithm is combined with a resizing technique that is an efficient optimal technique to control the drift of buildings without the repetitive structural analysis. The resizing technique-based hybrid genetic algorithm proposed in this paper is applied to the minimum weight design of three steel frame buildings. To evaluate the performance of the algorithm, optimum weights, computational times, and generation numbers from the proposed algorithm are compared with those from a genetic algorithm. Based on the comparisons, it is concluded that the hybrid genetic algorithm shows clear improvements in convergence properties.

  9. Application of Array-Based Comparative Genomic Hybridization to Pediatric Neurologic Diseases

    OpenAIRE

    2013-01-01

    Purpose Array comparative genomic hybridization (array-CGH) is a technique used to analyze quantitative increase or decrease of chromosomes by competitive DNA hybridization of patients and controls. This study aimed to evaluate the benefits and yield of array-CGH in comparison with conventional karyotyping in pediatric neurology patients. Materials and Methods We included 87 patients from the pediatric neurology clinic with at least one of the following features: developmental delay, mental r...

  10. COMPARATIVE ANALYSIS OF SATELLITE IMAGE PRE-PROCESSING TECHNIQUES

    Directory of Open Access Journals (Sweden)

    T. Sree Sharmila

    2013-01-01

    Full Text Available Satellite images are corrupted by noise in its acquisition and transmission. The removal of noise from the image by attenuating the high frequency image components, removes some important details as well. In order to retain the useful information and improve the visual appearance, an effective denoising and resolution enhancement techniques are required. In this research, Hybrid Directional Lifting (HDL technique is proposed to retain the important details of the image and improve the visual appearance. The Discrete Wavelet Transform (DWT based interpolation technique is developed for enhancing the resolution of the denoised image. The performance of the proposed techniques are tested by Land Remote-Sensing Satellite (LANDSAT images, using the quantitative performance measure, Peak Signal to Noise Ratio (PSNR and computation time to show the significance of the proposed techniques. The PSNR of the HDL technique increases 1.02 dB compared to the standard denoising technique and the DWT based interpolation technique increases 3.94 dB. From the experimental results it reveals that newly developed image denoising and resolution enhancement techniques improve the image visual quality with rich textures.

  11. Bonding techniques for hybrid active pixel sensors (HAPS)

    Science.gov (United States)

    Bigas, M.; Cabruja, E.; Lozano, M.

    2007-05-01

    A hybrid active pixel sensor (HAPS) consists of an array of sensing elements which is connected to an electronic read-out unit. The most used way to connect these two different devices is bump bonding. This interconnection technique is very suitable for these systems because it allows a very fine pitch and a high number of I/Os. However, there are other interconnection techniques available such as direct bonding. This paper, as a continuation of a review [M. Lozano, E. Cabruja, A. Collado, J. Santander, M. Ullan, Nucl. Instr. and Meth. A 473 (1-2) (2001) 95-101] published in 2001, presents an update of the different advanced bonding techniques available for manufacturing a hybrid active pixel detector.

  12. Evolutionary computation techniques a comparative perspective

    CERN Document Server

    Cuevas, Erik; Oliva, Diego

    2017-01-01

    This book compares the performance of various evolutionary computation (EC) techniques when they are faced with complex optimization problems extracted from different engineering domains. Particularly focusing on recently developed algorithms, it is designed so that each chapter can be read independently. Several comparisons among EC techniques have been reported in the literature, however, they all suffer from one limitation: their conclusions are based on the performance of popular evolutionary approaches over a set of synthetic functions with exact solutions and well-known behaviors, without considering the application context or including recent developments. In each chapter, a complex engineering optimization problem is posed, and then a particular EC technique is presented as the best choice, according to its search characteristics. Lastly, a set of experiments is conducted in order to compare its performance to other popular EC methods.

  13. Comparing Techniques for Certified Static Analysis

    Science.gov (United States)

    Cachera, David; Pichardie, David

    2009-01-01

    A certified static analysis is an analysis whose semantic validity has been formally proved correct with a proof assistant. The recent increasing interest in using proof assistants for mechanizing programming language metatheory has given rise to several approaches for certification of static analysis. We propose a panorama of these techniques and compare their respective strengths and weaknesses.

  14. High performance technique for database applicationsusing a hybrid GPU/CPU platform

    KAUST Repository

    Zidan, Mohammed A.

    2012-07-28

    Many database applications, such as sequence comparing, sequence searching, and sequence matching, etc, process large database sequences. we introduce a novel and efficient technique to improve the performance of database applica- tions by using a Hybrid GPU/CPU platform. In particular, our technique solves the problem of the low efficiency result- ing from running short-length sequences in a database on a GPU. To verify our technique, we applied it to the widely used Smith-Waterman algorithm. The experimental results show that our Hybrid GPU/CPU technique improves the average performance by a factor of 2.2, and improves the peak performance by a factor of 2.8 when compared to earlier implementations. Copyright © 2011 by ASME.

  15. Early Oscillation Detection Technique for Hybrid DC/DC Converters

    Science.gov (United States)

    Wang, Bright L.

    2011-01-01

    Oscillation or instability is a situation that must be avoided for reliable hybrid DC/DC converters. A real-time electronics measurement technique was developed to detect catastrophic oscillations at early stages for hybrid DC/DC converters. It is capable of identifying low-level oscillation and determining the degree of the oscillation at a unique frequency for every individual model of the converters without disturbing their normal operations. This technique is specially developed for space-used hybrid DC/DC converters, but it is also suitable for most of commercial and military switching-mode power supplies. This is a weak-electronic-signal detection technique to detect hybrid DC/DC converter oscillation presented as a specific noise signal at power input pins. It is based on principles of feedback control loop oscillation and RF signal modulations, and is realized by using signal power spectral analysis. On the power spectrum, a channel power amplitude at characteristic frequency (CPcf) and a channel power amplitude at switching frequency (CPsw) are chosen as oscillation level indicators. If the converter is stable, the CPcf is a very small pulse and the CPsw is a larger, clear, single pulse. At early stage of oscillation, the CPcf increases to a certain level and the CPsw shows a small pair of sideband pulses around it. If the converter oscillates, the CPcf reaches to a higher level and the CPsw shows more high-level sideband pulses. A comprehensive stability index (CSI) is adopted as a quantitative measure to accurately assign a degree of stability to a specific DC/DC converter. The CSI is a ratio of normal and abnormal power spectral density, and can be calculated using specified and measured CPcf and CPsw data. The novel and unique feature of this technique is the use of power channel amplitudes at characteristic frequency and switching frequency to evaluate stability and identify oscillations at an early stage without interfering with a DC/DC converter s

  16. A Comparative Analysis of Biomarker Selection Techniques

    Directory of Open Access Journals (Sweden)

    Nicoletta Dessì

    2013-01-01

    Full Text Available Feature selection has become the essential step in biomarker discovery from high-dimensional genomics data. It is recognized that different feature selection techniques may result in different set of biomarkers, that is, different groups of genes highly correlated to a given pathological condition, but few direct comparisons exist which quantify these differences in a systematic way. In this paper, we propose a general methodology for comparing the outcomes of different selection techniques in the context of biomarker discovery. The comparison is carried out along two dimensions: (i measuring the similarity/dissimilarity of selected gene sets; (ii evaluating the implications of these differences in terms of both predictive performance and stability of selected gene sets. As a case study, we considered three benchmarks deriving from DNA microarray experiments and conducted a comparative analysis among eight selection methods, representatives of different classes of feature selection techniques. Our results show that the proposed approach can provide useful insight about the pattern of agreement of biomarker discovery techniques.

  17. Comparative diagnostic techniques for cryptosporidium infection.

    Science.gov (United States)

    Omoruyi, Beauty E; Nwodo, Uchechukwu U; Udem, Chukwuneke S; Okonkwo, Francis O

    2014-02-24

    Diarrhoea caused by Cryptosporidium is usually mild in immune competent individuals but severe in the young and those with underlying disease leading to compromised immunity. The conventional diagnosis of Cryptosporidium requires observation of the infective oocysts however, their tiny size yields indistinct results, thus limiting the effectiveness of the conventional diagnostic technique, modified Ziehl-Neelsen (ZN) differential staining. Consequent to the abovementioned limitation, ZN staining, sandwich antigen detection enzyme linked immunosorbent assay (sad-ELISA) and a direct polymerase chain reaction (PCR) assay techniques were evaluated for diagnostic efficacy. Stool samples were collected from 180 consenting adult patients attending outpatient and inpatient clinics at Victoria Hospital, Alice, Eastern Cape Province of South Africa. Subjects were stratified as; 35 HIV-positive and diarrhoeagenic, 125 HIV-negative diarrhoeagenic and 20 apparently healthy controls. Cryptosporidium incidence following diagnostic techniques were 13 (37.1%; ZN staining), 26 (74.3%; sad-ELISA) and 23 (65.7%; PCR), respectively, among HIV-positive diarrhoeagenic patients and 34 (27.2%; ZN staining), 96 (76.8%; sad-ELISA) and 89 (71.2%; PCR) among HIV-negative diarrhoeagenic patients. Sensitivity, specificity and predictive values of the diagnostic techniques' efficiency were: sensitivity: 46.2% (HIV-positive) and 32.3% (HIV-negative) against the ZN technique and 96.9% against sad-ELISA and PCR, respectively, for both HIV-positive and -negative patients; specificity was 88.9% (HIV-positive) and 96.6% (HIV-negative) against the ZN technique. Lastly, the predictive values were 92.3% (HIV-positive) and 96.9% (HIV-negative), respectively, following ZN staining. The sad-ELISA technique proved more suitable for the determination of the presence of Cryptosporidium oocysts. The high incidence of Cryptosporidium in HIV-positive subjects as compared to the HIV-negative population accentuates

  18. Comparative Diagnostic Techniques for Cryptosporidium Infection

    Directory of Open Access Journals (Sweden)

    Beauty E. Omoruyi

    2014-02-01

    Full Text Available Diarrhoea caused by Cryptosporidium is usually mild in immune competent individuals but severe in the young and those with underlying disease leading to compromised immunity. The conventional diagnosis of Cryptosporidium requires observation of the infective oocysts however, their tiny size yields indistinct results, thus limiting the effectiveness of the conventional diagnostic technique, modified Ziehl-Neelsen (ZN differential staining. Consequent to the abovementioned limitation, ZN staining, sandwich antigen detection enzyme linked immunosorbent assay (sad-ELISA and a direct polymerase chain reaction (PCR assay techniques were evaluated for diagnostic efficacy. Stool samples were collected from 180 consenting adult patients attending outpatient and inpatient clinics at Victoria Hospital, Alice, Eastern Cape Province of South Africa. Subjects were stratified as; 35 HIV-positive and diarrhoeagenic, 125 HIV-negative diarrhoeagenic and 20 apparently healthy controls. Cryptosporidium incidence following diagnostic techniques were 13 (37.1%; ZN staining, 26 (74.3%; sad-ELISA and 23 (65.7%; PCR, respectively, among HIV-positive diarrhoeagenic patients and 34 (27.2%; ZN staining, 96 (76.8%; sad-ELISA and 89 (71.2%; PCR among HIV-negative diarrhoeagenic patients. Sensitivity, specificity and predictive values of the diagnostic techniques’ efficiency were: sensitivity: 46.2% (HIV-positive and 32.3% (HIV-negative against the ZN technique and 96.9% against sad-ELISA and PCR, respectively, for both HIV-positive and -negative patients; specificity was 88.9% (HIV-positive and 96.6% (HIV-negative against the ZN technique. Lastly, the predictive values were 92.3% (HIV-positive and 96.9% (HIV-negative, respectively, following ZN staining. The sad-ELISA technique proved more suitable for the determination of the presence of Cryptosporidium oocysts. The high incidence of Cryptosporidium in HIV-positive subjects as compared to the HIV-negative population

  19. De Novo Identification of Single Nucleotide Mutations in Caenorhabditis elegans Using Array Comparative Genomic Hybridization

    Science.gov (United States)

    Maydan, Jason S.; Okada, H. Mark; Flibotte, Stephane; Edgley, Mark L.; Moerman, Donald G.

    2009-01-01

    Array comparative genomic hybridization (aCGH) has been used primarily to detect copy-number variants between two genomes. Here we report using aCGH to detect single nucleotide mutations on oligonucleotide microarrays with overlapping 50-mer probes. This technique represents a powerful method for rapidly detecting novel homozygous single nucleotide mutations in any organism with a sequenced reference genome. PMID:19189945

  20. Comparison of hybrid volumetric modulated arc therapy (VMAT technique and double arc VMAT technique in the treatment of prostate cancer

    Directory of Open Access Journals (Sweden)

    Amaloo Christopher

    2015-09-01

    Full Text Available Background. Volumetric modulated arc therapy (VMAT has quickly become accepted as standard of care for the treatment of prostate cancer based on studies showing it is able to provide faster delivery with adequate target coverage and reduced monitor units while maintaining organ at risk (OAR sparing. This study aims to demonstrate the potential to increase dose conformality with increased planner control and OAR sparing using a hybrid treatment technique compared to VMAT.

  1. Biomechanical comparison of interference screw and cortical button with screw hybrid technique for distal biceps brachii tendon repair.

    Science.gov (United States)

    Arianjam, Afshin; Camisa, William; Leasure, Jeremi M; Montgomery, William H

    2013-11-01

    Various fixation techniques have been described for ruptured distal biceps tendons. The authors hypothesized that no significant differences would be found between the mean failure strength, maximum strength, and stiffness of the interference screw and hybrid technique. Fourteen fresh-frozen human cadaveric elbows were prepared. Specimens were randomized to either interference screw or hybrid cortical button with screw fixation. The tendon was pulled at a rate of 4 mm/s until failure. Failure strength, maximum strength, and stiffness were measured and compared. Failure strength, maximum strength, and stiffness were 294±81.9 N, 294±82.1 N, and 64.4±40.5 N/mm, respectively, for the interference screw technique and 333±129 N, 383±121 N, and 56.2±40.5 N/mm, respectively, for the hybrid technique. No statistically significant difference existed between the screw and hybrid technique in failure strength, maximum strength, or stiffness (P>.05). The interference screws primarily failed by pullout of the screw and tendon, whereas in the hybrid technique, failure occurred with screw pullout followed by tearing of the biceps tendon. The results suggest that this hybrid technique is nearly as strong and stiff as the interference screw alone. Although the hybrid technique facilitates tensioning of the reconstructed tendon, the addition of the cortical button did not significantly improve the failure strength of the interference screw alone. Copyright 2013, SLACK Incorporated.

  2. Comparative Analysis of Hand Gesture Recognition Techniques

    Directory of Open Access Journals (Sweden)

    Arpana K. Patel

    2015-03-01

    Full Text Available During past few years, human hand gesture for interaction with computing devices has continues to be active area of research. In this paper survey of hand gesture recognition is provided. Hand Gesture Recognition is contained three stages: Pre-processing, Feature Extraction or matching and Classification or recognition. Each stage contains different methods and techniques. In this paper define small description of different methods used for hand gesture recognition in existing system with comparative analysis of all method with its benefits and drawbacks are provided.

  3. A systematic comparative evaluation of biclustering techniques.

    Science.gov (United States)

    Padilha, Victor A; Campello, Ricardo J G B

    2017-01-23

    Biclustering techniques are capable of simultaneously clustering rows and columns of a data matrix. These techniques became very popular for the analysis of gene expression data, since a gene can take part of multiple biological pathways which in turn can be active only under specific experimental conditions. Several biclustering algorithms have been developed in the past recent years. In order to provide guidance regarding their choice, a few comparative studies were conducted and reported in the literature. In these studies, however, the performances of the methods were evaluated through external measures that have more recently been shown to have undesirable properties. Furthermore, they considered a limited number of algorithms and datasets. We conducted a broader comparative study involving seventeen algorithms, which were run on three synthetic data collections and two real data collections with a more representative number of datasets. For the experiments with synthetic data, five different experimental scenarios were studied: different levels of noise, different numbers of implanted biclusters, different levels of symmetric bicluster overlap, different levels of asymmetric bicluster overlap and different bicluster sizes, for which the results were assessed with more suitable external measures. For the experiments with real datasets, the results were assessed by gene set enrichment and clustering accuracy. We observed that each algorithm achieved satisfactory results in part of the biclustering tasks in which they were investigated. The choice of the best algorithm for some application thus depends on the task at hand and the types of patterns that one wants to detect.

  4. Hybrid Technique of Lamellar Keratoplasty (DMEK-S

    Directory of Open Access Journals (Sweden)

    Pavel Studeny

    2013-01-01

    Full Text Available Purpose: To evaluate the outcomes of the hybrid technique of posterior lamellar keratoplasty (DMEK-S. Materials and Methods: 71 eyes of 55 patients enrolled in a single-center study underwent posterior lamellar keratoplasty with a hybrid lamella DMEK-S implanted using a solution implantation technique, owing to endothelial dysfunction. The outcome measures studied were visual acuity and endothelial cell density. Results: The rate of endothelial cell loss caused by surgery was 43.8%. During followups, we observed the stabilization of postoperative findings, or at minimum a very low rate of corneal endothelial cell loss. The UCDVA and BCDVA dramatically improved postoperatively. The rebubbling rate in our group of patients was 61.9%. We replaced the lamella due to its failure or malfunction in 17 patients (23.9%. Conclusion: In summary, DMEK-S combines the advantages of DSEK/DSAEK and DMEK. The central zone of bare Descemet’s membrane and endothelium allows for very good visual outcomes, and the peripheral rim allows for better manipulation of the lamella during implantation. It is an effective method of treating the endothelial dysfunction of various etiologies, but the high complication rate needs to be addressed before widespread implementation of the technique in the future.

  5. GA and PSO culled hybrid technique for economic dispatch problem with prohibited operating zones

    Institute of Scientific and Technical Information of China (English)

    SUDHAKARAN M.; AJAY-D-VIMALRAJ P.; PALANIVELU T.G.

    2007-01-01

    This paper presents an efficient and reliable genetic algorithm (GA) based particle swarm optimization (PSO) technique (hybrid GAPSO) for solving the economic dispatch (ED) problem in power systems. The non-linear characteristics of the generators, such as prohibited operating zones, ramp rate limits and non-smooth cost functions of the practical generator operation are considered. The proposed hybrid algorithm is demonstrated for three different systems and the performance is compared with the GA and PSO in terms of solution quality and computation efficiency. Comparison of results proved that the proposed algorithm can obtain higher quality solutions efficiently in ED problems. A comprehensive software package is developed using MATLAB.

  6. A hybrid sequential deposition fabrication technique for micro fuel cells

    Science.gov (United States)

    Stanley, Kevin G.; Czyzewska, Eva K.; Vanderhoek, Tom P. K.; Fan, Lilian L. Y.; Abel, Keith A.; Wu, Q. M. Jonathan; Parameswaran, M. Ash

    2005-10-01

    Micro fuel cell systems have elicited significant interest due to their promise for instantly rechargeable, longer duration and portable power. Most micro fuel cell systems are either built as miniaturized plate-and-frame or silicon-based microelectromechanical systems (MEMS). Plate-and-frame systems are difficult to fabricate smaller than 20 cm3. Existing micro fuel cell designs cannot meet the cost, scale and power requirements of some portable power markets. Traditional MEMS scaling advantages do not apply to fuel cells because the minimum area for the fuel cell is fixed by the catalyst area required for a given power output, and minimum volume set by mass transport limitations. We have developed a new hybrid technique that borrows from both micro and macro machining techniques to create fuel cells in the 1-20 cm3 range, suitable for cell phones, PDAs and smaller devices.

  7. An Adaptive Hybrid Multiprocessor technique for bioinformatics sequence alignment

    KAUST Repository

    Bonny, Talal

    2012-07-28

    Sequence alignment algorithms such as the Smith-Waterman algorithm are among the most important applications in the development of bioinformatics. Sequence alignment algorithms must process large amounts of data which may take a long time. Here, we introduce our Adaptive Hybrid Multiprocessor technique to accelerate the implementation of the Smith-Waterman algorithm. Our technique utilizes both the graphics processing unit (GPU) and the central processing unit (CPU). It adapts to the implementation according to the number of CPUs given as input by efficiently distributing the workload between the processing units. Using existing resources (GPU and CPU) in an efficient way is a novel approach. The peak performance achieved for the platforms GPU + CPU, GPU + 2CPUs, and GPU + 3CPUs is 10.4 GCUPS, 13.7 GCUPS, and 18.6 GCUPS, respectively (with the query length of 511 amino acid). © 2010 IEEE.

  8. SU-E-T-16: A Hybrid VMAT/IMRT Technique for the Treatment of Nasopharyngeal Carcinoma

    Energy Technology Data Exchange (ETDEWEB)

    Zhao, N; Yang, R; Wang, J [Peking University Third Hospital, Beijing, Beijing (China)

    2014-06-01

    Purpose: To investigate a Hybrid VMAT/IMRT technique which combines volumetric modulated arc therapy (VMAT) and intensity modulated radiation therapy (IMRT) for nasopharyngeal carcinoma (NPC). Methods: 2 full arcs VMAT, 9-field IMRT and Hybrid VMAT/IMRT plans were created for 10 patients with NPC. The Hybrid VMAT/IMRT technique consisted of 1 full VMAT arc and 7 IMRT fields. The dose distribution of planning target volume (PTV) and organs at risk (OARs) for Hybrid VMAT/IMRT was compared with IMRT and VMAT. The monitor units (MUs) were also evaluated. Results: The Hybrid VMAT/IMRT technique significantly improved target dose homogeneity compared with IMRT and VMAT for PTV70 and PTV54. For PTV70 and PTV60, the Hybrid VMAT/IMRT technique significantly improved target dose conformity compared with IMRT (0.62 vs 0.47; p<0.05 and 0.64 vs 0.58; p<0.05, respectively) and VMAT (0.62 vs 0.43; p<0.05 and 0.64 vs 0.6; p<0.05, respectively). The near maximum dose (D2%) of temporomandibular joint (TMJ), temporal lobe and mandible for Hybrid plans were 5.5%, 7.9% and 5.2% lower than IMRT plans (p<0.05). The mean dose of TMJ, temporal lobe, mandible and unspecified tissue for Hybrid plans were 12.8%, 11.4%, 4.2% and 4.1% lower than IMRT plans (p<0.05). The mean dose of right parotid, mandible and unspecified tissue for Hybrid plans were 3.3%, 2.4% and 3.1% lower than VMAT plans (p<0.05). The mean MUs needed for IMRT, VMAT and Hybrid plans were 2256, 507 and 1394, respectively. Conclusion: Hybrid VMAT/IMRT technique significantly improved the target dose homogeneity and conformity compared with IMRT and VMAT and reduced the dose of OARs and unspecified tissue compared with IMRT with fewer MUs. Compared with VMAT, Hybrid VMAT/IMRT technique can better protect parotid gland, mandible and unspecified tissue. Ruijie Yang was funded by the grant project: National Natural Science Foundation of China (No. 81071237). Other authors have no competing interest for this work.

  9. Evolutionary insights into scleractinian corals using comparative genomic hybridizations.

    KAUST Repository

    Aranda, Manuel

    2012-09-21

    Coral reefs belong to the most ecologically and economically important ecosystems on our planet. Yet, they are under steady decline worldwide due to rising sea surface temperatures, disease, and pollution. Understanding the molecular impact of these stressors on different coral species is imperative in order to predict how coral populations will respond to this continued disturbance. The use of molecular tools such as microarrays has provided deep insight into the molecular stress response of corals. Here, we have performed comparative genomic hybridizations (CGH) with different coral species to an Acropora palmata microarray platform containing 13,546 cDNA clones in order to identify potentially rapidly evolving genes and to determine the suitability of existing microarray platforms for use in gene expression studies (via heterologous hybridization).

  10. Comparative anatomy of the petioles of different genomic Cydonia × Malus hybrids

    Directory of Open Access Journals (Sweden)

    Elisaveta Onica

    2013-04-01

    Full Text Available In the paper morphological and anatomical structure of the petioles of 15 different genomic hybrids between quince and apple are compared with other hybrids and the initial forms. Specific and common anatomic peculiarities of the petiole for the studied hybrids in comparison to other hybrids and parental forms are given.

  11. A hybrid computational grid architecture for comparative genomics.

    Science.gov (United States)

    Singh, Aarti; Chen, Chen; Liu, Weiguo; Mitchell, Wayne; Schmidt, Bertil

    2008-03-01

    Comparative genomics provides a powerful tool for studying evolutionary changes among organisms, helping to identify genes that are conserved among species, as well as genes that give each organism its unique characteristics. However, the huge datasets involved makes this approach impractical on traditional computer architectures leading to prohibitively long runtimes. In this paper, we present a new computational grid architecture based on a hybrid computing model to significantly accelerate comparative genomics applications. The hybrid computing model consists of two types of parallelism: coarse grained and fine grained. The coarse-grained parallelism uses a volunteer computing infrastructure for job distribution, while the fine-grained parallelism uses commodity computer graphics hardware for fast sequence alignment. We present the deployment and evaluation of this approach on our grid test bed for the all-against-all comparison of microbial genomes. The results of this comparison are then used by phenotype--genotype explorer (PheGee). PheGee is a new tool that nominates candidate genes responsible for a given phenotype.

  12. Comparative Analysis of Automatic Vehicle Classification Techniques: A Survey

    Directory of Open Access Journals (Sweden)

    Kanwal Yousaf

    2012-09-01

    Full Text Available Vehicle classification has emerged as a significant field of study because of its importance in variety of applications like surveillance, security system, traffic congestion avoidance and accidents prevention etc. So far numerous algorithms have been implemented for classifying vehicle. Each algorithm follows different procedures for detecting vehicles from videos. By evaluating some of the commonly used techniques we highlighted most beneficial methodology for classifying vehicles. In this paper we pointed out the working of several video based vehicle classification algorithms and compare these algorithms on the basis of different performance metrics such as classifiers, classification methodology or principles and vehicle detection ratio etc. After comparing these parameters we concluded that Hybrid Dynamic Bayesian Network (HDBN Classification algorithm is far better than the other algorithms due to its nature of estimating the simplest features of vehicles from different videos. HDBN detects vehicles by following important stages of feature extraction, selection and classification. It extracts the rear view information of vehicles rather than other information such as distance between the wheels and height of wheel etc.

  13. Chromogenic in situ hybridization: a multicenter study comparing silver in situ hybridization with FISH.

    Science.gov (United States)

    Bartlett, J M S; Campbell, Fiona M; Ibrahim, Merdol; Wencyk, Peter; Ellis, Ian; Kay, Elaine; Connolly, Yvonne; O'Grady, Anthony; Di Palma, Silvana; Starczynski, Jane; Morgan, John M; Jasani, Bharat; Miller, Keith

    2009-10-01

    Our purposes were to perform a robust assessment of a new HER2 chromogenic in situ hybridization test and report on concordance of silver in situ hybridization (SISH) data with fluorescence in situ hybridization (FISH) data and on intraobserver and interlaboratory scoring consistency. HER2 results were scored from 45 breast cancers in 7 laboratories using the Ventana (Tucson, AZ) INFORM HER-2 SISH assay and in 1 central laboratory using a standard FISH assay. Overall, 94.8% of cases were successfully analyzed by SISH across the 6 participating laboratories that reported data. Concordance for diagnosis of HER2 amplification by SISH compared with FISH was high (96.0% overall). Intraobserver variability (8.0%) and intersite variability (12.66%) of absolute HER2/chromosome 17 ratios appear to be tightly controlled across all 6 participating laboratories. The Ventana INFORM HER-2 SISH assay is robust and reproducible, shows good concordance with a standard FISH assay, and complies with requirements in national guidelines for performance of diagnostic tests.

  14. OFF-LINE HANDWRITING RECOGNITION USING VARIOUS HYBRID MODELING TECHNIQUES AND CHARACTER N-GRAMS

    NARCIS (Netherlands)

    Brakensiek, A.; Rottland, J.; Kosmala, A.; Rigoll, G.

    2004-01-01

    In this paper a system for on-line cursive handwriting recognition is described. The system is based on Hidden Markov Models (HMMs) using discrete and hybrid modeling techniques. Here, we focus on two aspects of the recognition system. First, we present different hybrid modeling techniques, whereas

  15. A HYBRID TECHNIQUE FOR FREQUENCY DOMAIN IDENTIFICATION OF SERVO SYSTEM WITH FRICTION FORCE

    Directory of Open Access Journals (Sweden)

    SHAIK.RAFI KIRAN,

    2011-03-01

    Full Text Available The system identification process in servo system with frictional force seems to be a complex task becauseof its non-linear nature. For such non-linear systems, a good choice is system identification in frequencydomain. However, most of the techniques are manual and are inappropriate for determination of systemparameters. This makes system identification ineffective for servo systems with frictional force. Toovercome this issue, a hybrid technique is proposed in this paper. The proposed technique exploits neuralnetwork and genetic algorithm to determine the system parameters of servo systems with friction. In theproposed technique, the target parameters are determined from the transfer function derived for thesystem. Subsequently, the system parameters are identified by a process formed by blending the neuralnetwork and genetic algorithm techniques. Prior to performing the identification procedure, backpropagation training is given to the neural network using a pre-examined dataset. Then with thecombined operation of neural network and genetic algorithm, the system parameters that are closer tothe target parameters for the servo system with frictional force are determined. The technique isimplemented and compared with the existing frequency domain identification technique. From thecomparative results, it is evident that the proposed technique outperforms the existing technique.

  16. Research related to improved computer aided design software package. [comparative efficiency of finite, boundary, and hybrid element methods in elastostatics

    Science.gov (United States)

    Walston, W. H., Jr.

    1986-01-01

    The comparative computational efficiencies of the finite element (FEM), boundary element (BEM), and hybrid boundary element-finite element (HVFEM) analysis techniques are evaluated for representative bounded domain interior and unbounded domain exterior problems in elastostatics. Computational efficiency is carefully defined in this study as the computer time required to attain a specified level of solution accuracy. The study found the FEM superior to the BEM for the interior problem, while the reverse was true for the exterior problem. The hybrid analysis technique was found to be comparable or superior to both the FEM and BEM for both the interior and exterior problems.

  17. Genomic alterations detected by comparative genomic hybridization in ovarian endometriomas

    Directory of Open Access Journals (Sweden)

    L.C. Veiga-Castelli

    2010-08-01

    Full Text Available Endometriosis is a complex and multifactorial disease. Chromosomal imbalance screening in endometriotic tissue can be used to detect hot-spot regions in the search for a possible genetic marker for endometriosis. The objective of the present study was to detect chromosomal imbalances by comparative genomic hybridization (CGH in ectopic tissue samples from ovarian endometriomas and eutopic tissue from the same patients. We evaluated 10 ovarian endometriotic tissues and 10 eutopic endometrial tissues by metaphase CGH. CGH was prepared with normal and test DNA enzymatically digested, ligated to adaptors and amplified by PCR. A second PCR was performed for DNA labeling. Equal amounts of both normal and test-labeled DNA were hybridized in human normal metaphases. The Isis FISH Imaging System V 5.0 software was used for chromosome analysis. In both eutopic and ectopic groups, 4/10 samples presented chromosomal alterations, mainly chromosomal gains. CGH identified 11q12.3-q13.1, 17p11.1-p12, 17q25.3-qter, and 19p as critical regions. Genomic imbalances in 11q, 17p, 17q, and 19p were detected in normal eutopic and/or ectopic endometrium from women with ovarian endometriosis. These regions contain genes such as POLR2G, MXRA7 and UBA52 involved in biological processes that may lead to the establishment and maintenance of endometriotic implants. This genomic imbalance may affect genes in which dysregulation impacts both eutopic and ectopic endometrium.

  18. Brain tumor segmentation based on a hybrid clustering technique

    Directory of Open Access Journals (Sweden)

    Eman Abdel-Maksoud

    2015-03-01

    This paper presents an efficient image segmentation approach using K-means clustering technique integrated with Fuzzy C-means algorithm. It is followed by thresholding and level set segmentation stages to provide an accurate brain tumor detection. The proposed technique can get benefits of the K-means clustering for image segmentation in the aspects of minimal computation time. In addition, it can get advantages of the Fuzzy C-means in the aspects of accuracy. The performance of the proposed image segmentation approach was evaluated by comparing it with some state of the art segmentation algorithms in case of accuracy, processing time, and performance. The accuracy was evaluated by comparing the results with the ground truth of each processed image. The experimental results clarify the effectiveness of our proposed approach to deal with a higher number of segmentation problems via improving the segmentation quality and accuracy in minimal execution time.

  19. A web server for mining Comparative Genomic Hybridization (CGH) data

    Science.gov (United States)

    Liu, Jun; Ranka, Sanjay; Kahveci, Tamer

    2007-11-01

    Advances in cytogenetics and molecular biology has established that chromosomal alterations are critical in the pathogenesis of human cancer. Recurrent chromosomal alterations provide cytological and molecular markers for the diagnosis and prognosis of disease. They also facilitate the identification of genes that are important in carcinogenesis, which in the future may help in the development of targeted therapy. A large amount of publicly available cancer genetic data is now available and it is growing. There is a need for public domain tools that allow users to analyze their data and visualize the results. This chapter describes a web based software tool that will allow researchers to analyze and visualize Comparative Genomic Hybridization (CGH) datasets. It employs novel data mining methodologies for clustering and classification of CGH datasets as well as algorithms for identifying important markers (small set of genomic intervals with aberrations) that are potentially cancer signatures. The developed software will help in understanding the relationships between genomic aberrations and cancer types.

  20. Evolutionary insights into scleractinian corals using comparative genomic hybridizations

    Directory of Open Access Journals (Sweden)

    Aranda Manuel

    2012-09-01

    Full Text Available Abstract Background Coral reefs belong to the most ecologically and economically important ecosystems on our planet. Yet, they are under steady decline worldwide due to rising sea surface temperatures, disease, and pollution. Understanding the molecular impact of these stressors on different coral species is imperative in order to predict how coral populations will respond to this continued disturbance. The use of molecular tools such as microarrays has provided deep insight into the molecular stress response of corals. Here, we have performed comparative genomic hybridizations (CGH with different coral species to an Acropora palmata microarray platform containing 13,546 cDNA clones in order to identify potentially rapidly evolving genes and to determine the suitability of existing microarray platforms for use in gene expression studies (via heterologous hybridization. Results Our results showed that the current microarray platform for A. palmata is able to provide biological relevant information for a wide variety of coral species covering both the complex clade as well the robust clade. Analysis of the fraction of highly diverged genes showed a significantly higher amount of genes without annotation corroborating previous findings that point towards a higher rate of divergence for taxonomically restricted genes. Among the genes with annotation, we found many mitochondrial genes to be highly diverged in M. faveolata when compared to A. palmata, while the majority of nuclear encoded genes maintained an average divergence rate. Conclusions The use of present microarray platforms for transcriptional analyses in different coral species will greatly enhance the understanding of the molecular basis of stress and health and highlight evolutionary differences between scleractinian coral species. On a genomic basis, we show that cDNA arrays can be used to identify patterns of divergence. Mitochondrion-encoded genes seem to have diverged faster than

  1. Design and Development of Hybrid Multilevel Inverter employing Dual Reference Modulation Technique for Fuel Cell Applications

    Directory of Open Access Journals (Sweden)

    R. Seyezhai

    2011-10-01

    Full Text Available MultiLevel Inverter (MLI has been recognized as an attractive topology for high voltage DC-AC conversion. This paper focuses on a new dual reference modulation technique for a hybrid multilevel inverter employing Silicon carbide (SiC switches for fuel cell applications. The proposed modulation technique employs two reference waveforms and a single inverted sine wave as the carrier waveform. This technique is compared with the conventional dual carrier waveform in terms of output voltage spectral quality and switching losses. An experimental five-level hybrid inverter test rig has been built using SiC switches to implement the proposed algorithm. Gating signals are generated using PIC microcontroller. The performance of the inverter has been analyzed and compared with the result obtained from theory and simulation. Simulation study of Proportional Integral (PI controller for the inverter employing the proposed modulation strategy has been done in MATLAB/SIMULINK. Keywords: Multilevel inverter, SiC , dual reference modulation, switching losses, PI

  2. Comparative analyses of plasma probe diagnostics techniques

    Energy Technology Data Exchange (ETDEWEB)

    Godyak, V. A. [Electrical Engineering and Computer Science Department, University of Michigan, Ann Arbor, Michigan 48109, USA and RF Plasma Consulting, Brookline, Massachusetts 02446 (United States); Alexandrovich, B. M. [Plasma Sensors, Brookline, Massachusetts 02446 (United States)

    2015-12-21

    The subject of this paper is a comparative analysis of the plasma parameters inferred from the classical Langmuir probe procedure, from different theories of the ion current to the probe, and from measured electron energy distribution function (EEDF) obtained by double differentiation of the probe characteristic. We concluded that the plasma parameters inferred from the classical Langmuir procedure can be subjected to significant inaccuracy due to the non-Maxwellian EEDF, uncertainty of locating the plasma potential, and the arbitrariness of the ion current approximation. The plasma densities derived from the ion part of the probe characteristics diverge by as much as an order of magnitude from the density calculated according to Langmuir procedure or calculated as corresponding integral of the measured EEDF. The electron temperature extracted from the ion part is always subjected to uncertainty. Such inaccuracy is attributed to modification of the EEDF for fast electrons due to inelastic electron collisions, and to deficiencies in the existing ion current theories; i.e., unrealistic assumptions about Maxwellian EEDFs, underestimation of the ion collisions and the ion ambipolar drift, and discounting deformation of the one-dimensional structure of the region perturbed by the probe. We concluded that EEDF measurement is the single reliable probe diagnostics for the basic research and industrial applications of highly non-equilibrium gas discharge plasmas. Examples of EEDF measurements point up importance of examining the probe current derivatives in real time and reiterate significance of the equipment technical characteristics, such as high energy resolution and wide dynamic range.

  3. Comparing techniques for measuring corticosterone in tadpoles

    Institute of Scientific and Technical Information of China (English)

    Pablo BURRACO; Rosa ARRIBAS; Saurabh S KULKARNI; Daniel R BUCHHOLZ; Ivan GOMEZ-MESTRE

    2015-01-01

    Glucocorticoids play a key role in mediating stress responses in vertebrates. Corticosterone (CORT) is the main glu-cocorticoid produced in amphibians, birds, and reptiles, and regulates several metabolic functions. The most common methods for quantifying CORT are competitive binding immunoassays: radioimmunoassay (RIA) and enzyme immunoassay (EIA). RIA has been broadly used since the 1980’s but it requires radioactivity. Commercial EIA kits permit quantifying hormone levels without radioactivity although the requirement for a larger sample volume may be a strong limitation for measurements involving larval amphibians. Here we usedXenopus laevis tadpoles to compare the performance of three commonly used procedures for determination of CORT: RIA on a chloroform extract of whole-body homogenate, EIA on plasma, and EIA on supernatant of whole-body homogenate. We treated tadpoles with exogenous CORT at 0, 25, 50, and 100 nM. RIA could distinguish between 0 and 25 nM, and EIA on plasma between 0 and 50 nM, whereas whole-body homogenate EIA only detected significant differences between 0 and 100 nM. Each procedure presents advantages and disadvantages regarding sensitivity, the use of radioactivity, sample size, handling time, and economic cost. RIA is preferred when studying small-bodied animals from which blood samples cannot be obtained. When CORT level differences are intermediate and blood sampling is possible, EIA on plasma is a good non-radioactive alternative. EIA on whole-body homogenates may be useful to assess qualitative changes in CORT levels when considerable differences are expected. Finally, we discuss our findings in the context of previous studies on CORT in amphibians [Current Zoology 61 (5): 835–845, 2015].

  4. Coupling Turbulence in Hybrid LES-RANS Techniques

    Science.gov (United States)

    Woodruff, Stephen L.

    2011-01-01

    A formulation is proposed for hybrid LES-RANS computations that permits accurate computations during resolution changes, so that resolution may be changed at will in order to employ only as much resolution in each subdomain as is required by the physics. The two components of this formulation, establishing the accuracy of a hybrid model at constant resolutions throughout the RANS-to-LES range and maintaining that accuracy when resolution is varied, are demonstrated for decaying, homogeneous, isotropic turbulence.

  5. Unexpected structural complexity of supernumerary marker chromosomes characterized by microarray comparative genomic hybridization

    Directory of Open Access Journals (Sweden)

    Hing Anne V

    2008-04-01

    Full Text Available Abstract Background Supernumerary marker chromosomes (SMCs are structurally abnormal extra chromosomes that cannot be unambiguously identified by conventional banding techniques. In the past, SMCs have been characterized using a variety of different molecular cytogenetic techniques. Although these techniques can sometimes identify the chromosome of origin of SMCs, they are cumbersome to perform and are not available in many clinical cytogenetic laboratories. Furthermore, they cannot precisely determine the region or breakpoints of the chromosome(s involved. In this study, we describe four patients who possess one or more SMCs (a total of eight SMCs in all four patients that were characterized by microarray comparative genomic hybridization (array CGH. Results In at least one SMC from all four patients, array CGH uncovered unexpected complexity, in the form of complex rearrangements, that could have gone undetected using other molecular cytogenetic techniques. Although array CGH accurately defined the chromosome content of all but two minute SMCs, fluorescence in situ hybridization was necessary to determine the structure of the markers. Conclusion The increasing use of array CGH in clinical cytogenetic laboratories will provide an efficient method for more comprehensive characterization of SMCs. Improved SMC characterization, facilitated by array CGH, will allow for more accurate SMC/phenotype correlation.

  6. Hybrid OPC modeling with SEM contour technique for 10nm node process

    Science.gov (United States)

    Hitomi, Keiichiro; Halle, Scott; Miller, Marshal; Graur, Ioana; Saulnier, Nicole; Dunn, Derren; Okai, Nobuhiro; Hotta, Shoji; Yamaguchi, Atsuko; Komuro, Hitoshi; Ishimoto, Toru; Koshihara, Shunsuke; Hojo, Yutaka

    2014-03-01

    Hybrid OPC modeling is investigated using both CDs from 1D and simple 2D structures and contours extracted from complex 2D structures, which are obtained by a Critical Dimension-Scanning Electron Microscope (CD-SEM). Recent studies have addressed some of key issues needed for the implementation of contour extraction, including an edge detection algorithm consistent with conventional CD measurements, contour averaging and contour alignment. Firstly, pattern contours obtained from CD-SEM images were used to complement traditional site driven CD metrology for the calibration of OPC models for both metal and contact layers of 10 nm-node logic device, developed in Albany Nano-Tech. The accuracy of hybrid OPC model was compared with that of conventional OPC model, which was created with only CD data. Accuracy of the model, defined as total error root-mean-square (RMS), was improved by 23% with the use of hybrid OPC modeling for contact layer and 18% for metal layer, respectively. Pattern specific benefit of hybrid modeling was also examined. Resist shrink correction was applied to contours extracted from CD-SEM images in order to improve accuracy of the contours, and shrink corrected contours were used for OPC modeling. The accuracy of OPC model with shrink correction was compared with that without shrink correction, and total error RMS was decreased by 0.2nm (12%) with shrink correction technique. Variation of model accuracy among 8 modeling runs with different model calibration patterns was reduced by applying shrink correction. The shrink correction of contours can improve accuracy and stability of OPC model.

  7. Silica/polyacrylonitrile hybrid nanofiber membrane separators via sol-gel and electrospinning techniques for lithium-ion batteries

    Science.gov (United States)

    Yanilmaz, Meltem; Lu, Yao; Zhu, Jiadeng; Zhang, Xiangwu

    2016-05-01

    Silica/polyacrylonitrile (SiO2/PAN) hybrid nanofiber membranes were fabricated by using sol-gel and electrospinning techniques and their electrochemical performance was evaluated for use as separators in lithium-ion batteries. The aim of this study was to design high-performance separator membranes with enhanced electrochemical performance and good thermal stability compared to microporous polyolefin membranes. In this study, SiO2 nanoparticle content up to 27 wt% was achieved in the membranes by using sol-gel technique. It was found that SiO2/PAN hybrid nanofiber membranes had superior electrochemical performance with good thermal stability due to their high SiO2 content and large porosity. Compared with commercial microporous polyolefin membranes, SiO2/PAN hybrid nanofiber membranes had larger liquid electrolyte uptake, higher electrochemical oxidation limit, and lower interfacial resistance with lithium. SiO2/PAN hybrid nanofiber membranes with different SiO2 contents (0, 16, 19 and 27 wt%) were also assembled into lithium/lithium iron phosphate cells, and high cell capacities and good cycling performance were demonstrated at room temperature. In addition, cells using SiO2/PAN hybrid nanofiber membranes with high SiO2 contents showed superior C-rate performance compared to those with low SiO2 contents and commercial microporous polyolefin membrane.

  8. Hybrid estimation technique for predicting butene concentration in polyethylene reactor

    Science.gov (United States)

    Mohd Ali, Jarinah; Hussain, M. A.

    2016-03-01

    A component of artificial intelligence (AI), which is fuzzy logic, is combined with the so-called conventional sliding mode observer (SMO) to establish a hybrid type estimator to predict the butene concentration in the polyethylene production reactor. Butene or co-monomer concentration is another significant parameter in the polymerization process since it will affect the molecular weight distribution of the polymer produced. The hybrid estimator offers straightforward formulation of SMO and its combination with the fuzzy logic rules. The error resulted from the SMO estimation will be manipulated using the fuzzy rules to enhance the performance, thus improved on the convergence rate. This hybrid estimation is able to estimate the butene concentration satisfactorily despite the present of noise in the process.

  9. Hardwood species classification with DWT based hybrid texture feature extraction techniques

    Indian Academy of Sciences (India)

    Arvind R Yadav; R S Anand; M L Dewal; Sangeeta Gupta

    2015-12-01

    In this work, discrete wavelet transform (DWT) based hybrid texture feature extraction techniques have been used to categorize the microscopic images of hardwood species into 75 different classes. Initially, the DWT has been employed to decompose the image up to 7 levels using Daubechies (db3) wavelet as decomposition filter. Further, first-order statistics (FOS) and four variants of local binary pattern (LBP) descriptors are used to acquire distinct features of these images at various levels. The linear support vector machine (SVM), radial basis function (RBF) kernel SVM and random forest classifiers have been employed for classification. The classification accuracy obtained with state-of-the-art and DWT based hybrid texture features using various classifiers are compared. The DWT based FOS-uniform local binary pattern (DWTFOSLBPu2) texture features at the 4th level of image decomposition have produced best classification accuracy of 97.67 ± 0.79% and 98.40 ± 064% for grayscale and RGB images, respectively, using linear SVM classifier. Reduction in feature dataset by minimal redundancy maximal relevance (mRMR) feature selection method is achieved and the best classification accuracy of 99.00 ± 0.79% and 99.20 ± 0.42% have been obtained for DWT based FOS-LBP histogram Fourier features (DWTFOSLBP-HF) technique at the 5th and 6th levels of image decomposition for grayscale and RGB images, respectively, using linear SVM classifier. The DWTFOSLBP-HF features selected with mRMR method has also established superiority amongst the DWT based hybrid texture feature extraction techniques for randomly divided database into different proportions of training and test datasets.

  10. Hybrid computer techniques for solving partial differential equations

    Science.gov (United States)

    Hammond, J. L., Jr.; Odowd, W. M.

    1971-01-01

    Techniques overcome equipment limitations that restrict other computer techniques in solving trivial cases. The use of curve fitting by quadratic interpolation greatly reduces required digital storage space.

  11. [Comparative molecular cytogenetic characterization of partial wheat-wheatgrass hybrids].

    Science.gov (United States)

    Krupin, P Yu; Divashuk, M G; Belov, V I; Glukhova, L I; Aleksandrov, O S; Karlov, G I

    2011-04-01

    The chromosomal composition of the Zernokormovaya 169, Istra 1, Ostankinskaya, and Otrastayushchaya 38 cultivars of octoploid partial wheat-wheatgrass hybrids was studied using genomic in situ hybridization (GISH). Differentiation of wheatgrass chromosomes by the distribution of the GISH signal along the chromosome was revealed. The wheatgrass chromosomes of the hybrid cultivars studied in the work differed in the type of differentiation, centromeric index, and absolute size. The cytogenetic distinctions of these chromosomes revealed by us can be used in making crosses and in studying the transmission through gametes of additional wheatgrass chromosomes.

  12. Enhancement in Seismic Imaging using Diffraction Studies and Hybrid Traveltime Technique for PSDM

    Science.gov (United States)

    Bashir, Y.; Ghosh, D. P.; Moussavi Alashloo, S. Y.; Sum, C. W.

    2016-07-01

    The accurate migration of seismic data is conditional on the parameters which are nominated. The effective velocity used in residual processing for migration is small compared to the original migration velocity. Considering traveltime computation is a significant part of seismic imaging algorithms. Conventional implementation of Kirchhoff migration is essential for precomputing a traveltime table from the categories involving traditional ray-tracing methods and finite difference eikonal solvers. In this paper, we examine the accuracy using, the eikonal solver and paraxial ray tracing traveltime computation in pre-stack Kirchhoff depth migration. This hybrid traveltime technique can be applied to a variety of problems related to faults, fractures, and complex region. To evaluate the relevance of this identical traveltime technique, we applied on a Marmousi data set.

  13. A comparative study of sampling techniques for monitoring carcass contamination

    NARCIS (Netherlands)

    Snijders, J.M.A.; Janssen, M.H.W.; Gerats, G.E.; Corstiaensen, G.P.

    1984-01-01

    Four bacteriological sampling techniques i.e. the excision, double swab, agar contract and modified agar contact techniques were compared by sampling pig carcasses before and after chilling. As well as assessing the advantages and disadvantages of the techniques particular attention was paid to

  14. A comparative study of sampling techniques for monitoring carcass contamination

    NARCIS (Netherlands)

    Snijders, J.M.A.; Janssen, M.H.W.; Gerats, G.E.; Corstiaensen, G.P.

    1984-01-01

    Four bacteriological sampling techniques i.e. the excision, double swab, agar contract and modified agar contact techniques were compared by sampling pig carcasses before and after chilling. As well as assessing the advantages and disadvantages of the techniques particular attention was paid to vari

  15. A Comparative Study of Three Vibration Based Damage Assessment Techniques

    DEFF Research Database (Denmark)

    Kirkegaard, Poul Henning; Rytter, A.

    Three different vibration based damage assessment techniques have been compared. One of the techniques uses the ratios between changes in experimentally and theoretically estimated natural frequencies, respectively, to locate a damage. The second technique relies on updating of an FEM based...

  16. Comparing mRNA levels using in situ hybridization of a target gene and co-stain

    OpenAIRE

    Wunderlich, Zeba; Bragdon, Meghan D.; Angela H. DePace

    2014-01-01

    In situ hybridization is an important technique for measuring the spatial expression patterns of mRNA in cells, tissues, and whole animals. However, mRNA levels cannot be compared across experiments using typical protocols. Here we present a semi-quantitative method to compare mRNA levels of a gene across multiple samples. This method yields an estimate of the error in the measurement to allow statistical comparison. Our method uses a typical in situ hybridization protocol to stain for a targ...

  17. Comparative genomic in situ hybridization analysis on the ...

    African Journals Online (AJOL)

    AJL

    2012-04-10

    Apr 10, 2012 ... different parents/ancestors/genomes in hybrid plants to be distinguished ... sequences in common between the two species. Therefore, cGISH ... genomic organization and genome evolution in plants. (Zoller et al., 2001).

  18. Array comparative genomic hybridization in retinoma and retinoblastoma tissues.

    Science.gov (United States)

    Sampieri, Katia; Amenduni, Mariangela; Papa, Filomena Tiziana; Katzaki, Eleni; Mencarelli, Maria Antonietta; Marozza, Annabella; Epistolato, Maria Carmela; Toti, Paolo; Lazzi, Stefano; Bruttini, Mirella; De Filippis, Roberta; De Francesco, Sonia; Longo, Ilaria; Meloni, Ilaria; Mari, Francesca; Acquaviva, Antonio; Hadjistilianou, Theodora; Renieri, Alessandra; Ariani, Francesca

    2009-03-01

    In retinoblastoma, two RB1 mutations are necessary for tumor development. Recurrent genomic rearrangements may represent subsequent events required for retinoblastoma progression. Array-comparative genomic hybridization was carried out in 18 eye samples, 10 from bilateral and eight from unilateral retinoblastoma patients. Two unilateral cases also showed areas of retinoma. The most frequent imbalance in retinoblastomas was 6p gain (40%), followed by gains at 1q12-q25.3, 2p24.3-p24.2, 9q22.2, and 9q33.1 and losses at 11q24.3, 13q13.2-q22.3, and 16q12.1-q21. Bilateral cases showed a lower number of imbalances than unilateral cases (P = 0.002). Unilateral cases were divided into low-level ( or = 7) chromosomal instability groups. The first group presented with younger age at diagnosis (mean 511 days) compared with the second group (mean 1606 days). In one retinoma case ophthalmoscopically diagnosed as a benign lesion no rearrangements were detected, whereas the adjacent retinoblastoma displayed seven aberrations. The other retinoma case identified by retrospective histopathological examination shared three rearrangements with the adjacent retinoblastoma. Two other gene-free rearrangements were retinoma specific. One rearrangement, dup5p, was retinoblastoma specific and included the SKP2 gene. Genomic profiling indicated that the first retinoma was a pretumoral lesion, whereas the other represents a subclone of cells bearing 'benign' rearrangements overwhelmed by another subclone presenting aberrations with higher 'oncogenic' potential. In summary, the present study shows that bilateral and unilateral retinoblastoma have different chromosomal instability that correlates with the age of tumor onset in unilateral cases. This is the first report of genomic profiling in retinoma tissue, shedding light on the different nature of lesions named 'retinoma'.

  19. CGHScan: finding variable regions using high-density microarray comparative genomic hybridization data

    Directory of Open Access Journals (Sweden)

    Rajashekara Gireesh

    2006-04-01

    Full Text Available Abstract Background Comparative genomic hybridization can rapidly identify chromosomal regions that vary between organisms and tissues. This technique has been applied to detecting differences between normal and cancerous tissues in eukaryotes as well as genomic variability in microbial strains and species. The density of oligonucleotide probes available on current microarray platforms is particularly well-suited for comparisons of organisms with smaller genomes like bacteria and yeast where an entire genome can be assayed on a single microarray with high resolution. Available methods for analyzing these experiments typically confine analyses to data from pre-defined annotated genome features, such as entire genes. Many of these methods are ill suited for datasets with the number of measurements typical of high-density microarrays. Results We present an algorithm for analyzing microarray hybridization data to aid identification of regions that vary between an unsequenced genome and a sequenced reference genome. The program, CGHScan, uses an iterative random walk approach integrating multi-layered significance testing to detect these regions from comparative genomic hybridization data. The algorithm tolerates a high level of noise in measurements of individual probe intensities and is relatively insensitive to the choice of method for normalizing probe intensity values and identifying probes that differ between samples. When applied to comparative genomic hybridization data from a published experiment, CGHScan identified eight of nine known deletions in a Brucella ovis strain as compared to Brucella melitensis. The same result was obtained using two different normalization methods and two different scores to classify data for individual probes as representing conserved or variable genomic regions. The undetected region is a small (58 base pair deletion that is below the resolution of CGHScan given the array design employed in the study

  20. Hybrid Model Testing Technique for Deep-Sea Platforms Based on Equivalent Water Depth Truncation

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    In this paper, an inner turret moored FPSO which works in the water of 320 m depth, is selected to study the so-called "passively-truncated + numerical-simulation" type of hybrid model testing technique while the truncated water depth is 160 m and the model scale λ=80. During the investigation, the optimization design of the equivalent-depth truncated system is performed by using the similarity of the static characteristics between the truncated system and the full depth one as the objective function. According to the truncated system, the corresponding physical test model is made. By adopting the coupling time domain simulation method, the truncated system model test is numerically reconstructed to carefully verify the computer simulation software and to adjust the corresponding hydrodynamic parameters. Based on the above work, the numerical extrapolation to the full depth system is performed by using the verified computer software and the adjusted hydrodynamic parameters. The full depth system model test is then performed in the basin and the results are compared with those from the numerical extrapolation. At last, the implementation procedure and the key technique of the hybrid model testing of the deep-sea platforms are summarized and printed. Through the above investigations, some beneficial conclusions are presented.

  1. A Hybrid Islanding Detection Technique Using Average Rate of Voltage Change and Real Power Shift

    DEFF Research Database (Denmark)

    Mahat, Pukar; Chen, Zhe; Bak-Jensen, Birgitte

    2009-01-01

    technique is proposed to solve this problem. An average rate of voltage change (passive technique) has been used to initiate a real power shift (active technique), which changes the eal power of distributed generation (DG), when the passive technique cannot have a clear discrimination between islanding......The mainly used islanding detection techniques may be classified as active and passive techniques. Passive techniques don't perturb the system but they have larger nondetection znes, whereas active techniques have smaller nondetection zones but they perturb the system. In this paper, a new hybrid...

  2. PHOTOPROBER® Biotin: An Alternative Method for Labeling Archival DNA for Comparative Genomic Hybridization

    Directory of Open Access Journals (Sweden)

    Dirk Korinth

    2004-01-01

    Full Text Available Comparative genomic hybridization (CGH represents a powerful method for screening the entire genome of solid tumors for chromosomal imbalances. Particularly it enabled the molecular cytogenetic analysis of archival, formalin‐fixed, paraffin‐embedded (FFPE tissue. A well‐known dilemma, however, is the poor DNA quality of this material with fragment sizes below 1000 bp. Nick translation, the conventionally used enzymatic DNA labeling method in CGH, leads to even shorter fragments often below a critical limit for successful analysis. In this study we report the alternative application of non‐enzymatic, PHOTOPROBE® biotin labeling for conjugation of the hapten to the DNA prior to in situ hybridization and fluorescence detection. We analyzed 51 FFPE tumor samples mainly from the upper respiratory tract by both labeling methods. In 19 cases, both approaches were successful. The comparison of hybridized metaphases showed a distinct higher fluorescence signal of the PHOTOPROBE® samples sometimes with a discrete cytoplasm background which however did not interfere with specificity and sensitivity of the detected chromosomal imbalances. For further 32 cases characterized by an average DNA fragment size below 1000 bp, PHOTOPROBE® biotin was the only successful labeling technique thus offering a new option for CGH analysis of highly degraded DNA from archival material.

  3. Comparative Analysis of Vehicle Make and Model Recognition Techniques

    Directory of Open Access Journals (Sweden)

    Faiza Ayub Syed

    2014-03-01

    Full Text Available Vehicle Make and Model Recognition (VMMR has emerged as a significant element of vision based systems because of its application in access control systems, traffic control and monitoring systems, security systems and surveillance systems, etc. So far a number of techniques have been developed for vehicle recognition. Each technique follows different methodology and classification approaches. The evaluation results highlight the recognition technique with highest accuracy level. In this paper we have pointed out the working of various vehicle make and model recognition techniques and compare these techniques on the basis of methodology, principles, classification approach, classifier and level of recognition After comparing these factors we concluded that Locally Normalized Harris Corner Strengths (LHNS performs best as compared to other techniques. LHNS uses Bayes and K-NN classification approaches for vehicle classification. It extracts information from frontal view of vehicles for vehicle make and model recognition.

  4. Direct detection of expanded trinucleotide repeats using DNA hybridization techniques

    Energy Technology Data Exchange (ETDEWEB)

    Petronis, A.; Tatuch, Y.; Kennedy, J.L. [Univ. of Toronto (Canada)] [and others

    1994-09-01

    Recently, unstable trinucleotide repeats have been shown to be the etiologic factor in several neuropsychiatric diseases, and they may play a similar role in other disorders. To our knowledge, a method that detects expanded trinucleotide sequences with the opportunity for direct localization and cloning has not been achieved. We have developed a set of hybridization-based methods for direct detection of unstable DNA expansion. Our analysis of myotonic dystrophy patients that possess different degrees of (CTG){sub n} expansion, versus unaffected controls, has demonstrated the identification of the trinucleotide instability site without any prior information regarding genetic map location. High stringency modified Southern blot hybridization with a PCR-generated trinucleotide repeat probe allowed us to detect the DNA fragment containing the expansion in myotonic dystrophy patients. The same probe was used for fluorescent in situ hybridization and several regions of (CTG){sub n}/(CAG){sub n} repeats in the human genome were detected, including the myotonic dystrophy locus on chromosome 19q. These strategies can be applied to directly clone genes involved in disorders caused by unstable DNA.

  5. Application of asymptotic waveform approximation technique to hybrid FE/BI method for 3D scattering

    Institute of Scientific and Technical Information of China (English)

    PENG Zhen; SHENG XinQing

    2007-01-01

    The asymptotic waveform evaluation (AWE) technique is a rational function approximation method in computational mathematics, which is used in many applications in computational electromagnetics. In this paper, the performance of the AWE technique in conjunction with hybrid finite element/boundary integral (FE/BI) method is firstly investigated. The formulation of the AWE applied in hybrid FE/BI method is given in detail. The characteristic implementation of the application of the AWE to the hybrid FE/BI method is discussed. Numerical results demonstrate that the AWE technique can greatly speed up the hybrid FE/BI method to acquire wide-band and wide-angle backscatter radar-cross-section (RCS) by complex targets.

  6. Comparative gene expression profiles between heterotic and non-heterotic hybrids of tetraploid Medicago sativa

    Directory of Open Access Journals (Sweden)

    Nettleton Dan

    2009-08-01

    Full Text Available Abstract Background Heterosis, the superior performance of hybrids relative to parents, has clear agricultural value, but its genetic control is unknown. Our objective was to test the hypotheses that hybrids expressing heterosis for biomass yield would show more gene expression levels that were different from midparental values and outside the range of parental values than hybrids that do not exhibit heterosis. Results We tested these hypotheses in three Medicago sativa (alfalfa genotypes and their three hybrids, two of which expressed heterosis for biomass yield and a third that did not, using Affymetrix M. truncatula GeneChip arrays. Alfalfa hybridized to approximately 47% of the M. truncatula probe sets. Probe set signal intensities were analyzed using MicroArray Suite v.5.0 (MAS and robust multi-array average (RMA algorithms. Based on MAS analysis, the two heterotic hybrids performed similarly, with about 27% of genes showing differential expression among the parents and their hybrid compared to 12.5% for the non-heterotic hybrid. At a false discovery rate of 0.15, 4.7% of differentially expressed genes in hybrids (~300 genes showed nonadditive expression compared to only 0.5% (16 genes in the non-heterotic hybrid. Of the nonadditively expressed genes, approximately 50% showed expression levels that fell outside the parental range in heterotic hybrids, but only one of 16 showed a similar profile in the non-heterotic hybrid. Genes whose expression differed in the parents were three times more likely to show nonadditive expression than genes whose parental transcript levels were equal. Conclusion The higher proportions of probe sets with expression level that differed from the parental midparent value and that were more extreme than either parental value in the heterotic hybrids compared to a non-heterotic hybrid were also found using RMA. We conclude that nonadditive expression of transcript levels may contribute to heterosis for biomass

  7. Hybrid Clustering-GWO-NARX neural network technique in predicting stock price

    Science.gov (United States)

    Das, Debashish; Safa Sadiq, Ali; Mirjalili, Seyedali; Noraziah, A.

    2017-09-01

    Prediction of stock price is one of the most challenging tasks due to nonlinear nature of the stock data. Though numerous attempts have been made to predict the stock price by applying various techniques, yet the predicted price is not always accurate and even the error rate is high to some extent. Consequently, this paper endeavours to determine an efficient stock prediction strategy by implementing a combinatorial method of Grey Wolf Optimizer (GWO), Clustering and Non Linear Autoregressive Exogenous (NARX) Technique. The study uses stock data from prominent stock market i.e. New York Stock Exchange (NYSE), NASDAQ and emerging stock market i.e. Malaysian Stock Market (Bursa Malaysia), Dhaka Stock Exchange (DSE). It applies K-means clustering algorithm to determine the most promising cluster, then MGWO is used to determine the classification rate and finally the stock price is predicted by applying NARX neural network algorithm. The prediction performance gained through experimentation is compared and assessed to guide the investors in making investment decision. The result through this technique is indeed promising as it has shown almost precise prediction and improved error rate. We have applied the hybrid Clustering-GWO-NARX neural network technique in predicting stock price. We intend to work with the effect of various factors in stock price movement and selection of parameters. We will further investigate the influence of company news either positive or negative in stock price movement. We would be also interested to predict the Stock indices.

  8. A novel hybrid meta-heuristic technique applied to the well-known benchmark optimization problems

    Science.gov (United States)

    Abtahi, Amir-Reza; Bijari, Afsane

    2016-09-01

    In this paper, a hybrid meta-heuristic algorithm, based on imperialistic competition algorithm (ICA), harmony search (HS), and simulated annealing (SA) is presented. The body of the proposed hybrid algorithm is based on ICA. The proposed hybrid algorithm inherits the advantages of the process of harmony creation in HS algorithm to improve the exploitation phase of the ICA algorithm. In addition, the proposed hybrid algorithm uses SA to make a balance between exploration and exploitation phases. The proposed hybrid algorithm is compared with several meta-heuristic methods, including genetic algorithm (GA), HS, and ICA on several well-known benchmark instances. The comprehensive experiments and statistical analysis on standard benchmark functions certify the superiority of the proposed method over the other algorithms. The efficacy of the proposed hybrid algorithm is promising and can be used in several real-life engineering and management problems.

  9. A novel hybrid meta-heuristic technique applied to the well-known benchmark optimization problems

    Science.gov (United States)

    Abtahi, Amir-Reza; Bijari, Afsane

    2017-09-01

    In this paper, a hybrid meta-heuristic algorithm, based on imperialistic competition algorithm (ICA), harmony search (HS), and simulated annealing (SA) is presented. The body of the proposed hybrid algorithm is based on ICA. The proposed hybrid algorithm inherits the advantages of the process of harmony creation in HS algorithm to improve the exploitation phase of the ICA algorithm. In addition, the proposed hybrid algorithm uses SA to make a balance between exploration and exploitation phases. The proposed hybrid algorithm is compared with several meta-heuristic methods, including genetic algorithm (GA), HS, and ICA on several well-known benchmark instances. The comprehensive experiments and statistical analysis on standard benchmark functions certify the superiority of the proposed method over the other algorithms. The efficacy of the proposed hybrid algorithm is promising and can be used in several real-life engineering and management problems.

  10. Chromosomal imbalances revealed in primary rhabdomyosarcomas by comparative genomic hybridization

    Institute of Scientific and Technical Information of China (English)

    LI Qiao-xin; LIU Chun-xia; CHUN Cai-pu; QI Yan; CHANG Bin; LI Xin-xia; CHEN Yun-zhao; NONG Wei-xia; LI Hong-an; LI Feng

    2009-01-01

    Background Previous cytogenetic studies revealed aberrations varied among the throe subtypes of rhabdomyosarcoma. We profiled chromosomal imbalances in the different subtypes and investigated the relationships between clinical parameters and genomic aberrations.Methods Comparative genomic hybridization was used to investigate genomic imbalances in 25 cases of primary rhabdomyosarcomas and two rhabdomyosarcoma cell lines. Specimens were reviewed to determine histological type, pathological grading and clinical staging.Results Changes involving one or more regions of the genome were seen in all rhabdomyosarcomal patients. For rhabdomyosarcoma, DNA sequence gains were most frequently (>30%) seen in chromosomes 2p, 12q, 6p, 9q, 10q, 1p,2q, 6q, 8q, 15q and 18q; losses from 3p, 11p and 6p. In aggressive alveolar rhabdomyosarcoma, frequent gains were seen on chromosomes 12q, 2p, 6p, 2q, 4q, 10q and 15q; losses from 3p, 6p, 1q and 5q. For embryonic rhabdomyosarcoma, frequent gains were on 7p, 9q, 2p, 18q, 1p and 8q; losses only from 11p. Frequently gained chromosome arms of translocation associated with rhabdomyosarcoma were 12q, 2, 6, 10q, 4q and 15q; losses from 3p,6p and 5q. The frequently gained chromosome arms of nontranslocation associated with rhabdomyosarcoma were 2p,9q and 18q, while 11p and 14q were the frequently lost chromosome arms. Gains on chromosome 12q were significantly correlated with translocation type. Gains on chromosome 9q were significantly correlated with clinical staging. Conclusions Gains on chromosomes 2p, 12q, 6p, 9q, 10q, 1p, 2q, 6q, 8q, 15q and 18q and losses on chromosomes 3p, 11p and 6p may be related to rhabdomyosarcomal carcinogenesis. Furthermore, gains on chromosome 12q may be correlated with translocation and gains on chromosome 9q with the early stages of rhabdomyosarcoma.

  11. Interspecies comparative genome hybridization and interspecies representational difference analysis reveal gross DNA differences between humans and great apes.

    Science.gov (United States)

    Toder, R; Xia, Y; Bausch, E

    1998-09-01

    Comparative chromosome G-/R-banding, comparative gene mapping and chromosome painting techniques have demonstrated that only few chromosomal rearrangements occurred during great ape and human evolution. Interspecies comparative genome hybridization (CGH), used here in this study, between human, gorilla and pygmy chimpanzee revealed species-specific regions in all three species. In contrast to the human, a far more complex distribution of species-specific blocks was detected with CGH in gorilla and pygmy chimpanzee. Most of these blocks coincide with already described heterochromatic regions on gorilla and chimpanzee chromosomes. Representational difference analysis (RDA) was used to subtract the complex genome of gorilla against human in order to enrich gorilla-specific DNA sequences. Gorilla-specific clones isolated with this technique revealed a 32-bp repeat unit. These clones were mapped by fluorescence in situ hybridization (FISH) to the telomeric regions of gorilla chromosomes that had been shown by interspecies CGH to contain species-specific sequences.

  12. Improved Framework for Breast Cancer Detection using Hybrid Feature Extraction Technique and FFNN

    Directory of Open Access Journals (Sweden)

    Ibrahim Mohamed Jaber Alamin

    2016-10-01

    Full Text Available Breast Cancer early detection using terminologies of image processing is suffered from the less accuracy performance in different automated medical tools. To improve the accuracy, still there are many research studies going on different phases such as segmentation, feature extraction, detection, and classification. The proposed framework is consisting of four main steps such as image preprocessing, image segmentation, feature extraction and finally classification. This paper presenting the hybrid and automated image processing based framework for breast cancer detection. For image preprocessing, both Laplacian and average filtering approach is used for smoothing and noise reduction if any. These operations are performed on 256 x 256 sized gray scale image. Output of preprocessing phase is used at efficient segmentation phase. Algorithm is separately designed for preprocessing step with goal of improving the accuracy. Segmentation method contributed for segmentation is nothing but the improved version of region growing technique. Thus breast image segmentation is done by using proposed modified region growing technique. The modified region growing technique overcoming the limitations of orientation as well as intensity. The next step we proposed is feature extraction, for this framework we have proposed to use combination of different types of features such as texture features, gradient features, 2D-DWT features with higher order statistics (HOS. Such hybrid feature set helps to improve the detection accuracy. For last phase, we proposed to use efficient feed forward neural network (FFNN. The comparative study between existing 2D-DWT feature extraction and proposed HOS-2D-DWT based feature extraction methods is proposed.

  13. Performance improvement of hybrid subcarrier multiplexing optical spectrum code division multiplexing system using spectral direct decoding detection technique

    Science.gov (United States)

    Sahbudin, R. K. Z.; Abdullah, M. K.; Mokhtar, M.

    2009-06-01

    This paper proposes a hybrid subcarrier multiplexing/optical spectrum code division multiplexing (SCM/OSCDM) system for the purpose of combining the advantages of both techniques. Optical spectrum code division multiple-access (OSCDMA) is one of the multiplexing techniques that is becoming popular because of the flexibility in the allocation of channels, ability to operate asynchronously, enhanced privacy and increased capacity in bursty nature networks. On the other hand, subcarrier multiplexing (SCM) technique is able to enhance the channel data rate of OSCDMA systems. In this paper, a newly developed detection technique for the OSCDM called spectral direct decoding (SDD) detection technique is compared mathematically with the AND subtraction detection technique. The system utilizes a new unified code construction named KS (Khazani-Syed) code. The results characterizing the bit-error-rate (BER) show that SDD offers a significant improved performance at BER of 10 -9.

  14. Test and numerical simulation of a new type of hybrid control technique

    Institute of Scientific and Technical Information of China (English)

    Meng Qingli; Zhang Minzheng; Cheng Dong

    2005-01-01

    In this paper, a new hybrid control technique, based on a combination of base-isolation and semi-active variable stiffness/damping in a superstructure, is presented. To illustrate the efficiency of the proposed control system, model tests on a mini-electromagnetic shaking table and a numerical simulation were performed. The test and numerical calculation results indicate that this new hybrid control mode with additional damping and smaller additional stiffness can achieve a better control efficiency.

  15. Management of internal resorption of central incisor using hybrid technique.

    Science.gov (United States)

    Gayathri, Prabakaran; Pandey, Ramesh Kumar; Jain, Eesha

    2014-01-28

    Internal inflammatory root resorption is characterised by progressive destruction of intraradicular dentin and dentinal tubules along the root canal wall. A number of theories have been proposed as a possible cause for internal resorption. It is usually asymptomatic and detected during routine radiographic investigations. Prompt diagnosis and early management of such defects is essential to maintain the integrity of the tooth. Non-surgical and surgical methods are the two main strategies involved in the management of internal resorption. The non-surgical method is usually preferred, but in cases of extensive resorption with external root perforation, surgical intervention has been advocated. The present case illustrates repair of perforating internal resorption by hybrid method, using mineral trioxide aggregate and gutta-percha, following surgical exposure. After a 10-month follow-up, no clinical and radiographic abnormalities were observed. Additionally, there was also marked reduction in periodontal pocket depth.

  16. [Comparative study of two techniques of ciclosporine monitoring].

    Science.gov (United States)

    Charfi, Rim; El Jebari, Hanène; Gaïes, Emna; Charfi, Ons; Jebabli, Nadia; Thouraya, Riahi; Ben Messaouda, Mhamed; Lakhal, Mohamed; Klouz, Anis; Salouage, Issam; Trabelsi, Sameh

    2015-01-01

    Ciclosporine (CsA) is an immunosuppressant drug used in bone marrow transplantation in order to extend allograft survival. Despite its efficiency, CsA can expose to therapeutic failure or to toxicity because of underdosing or overdosage. So, many techniques of monitoring CsA in blood were used, the referance one is the chromatographic technique then, the automated techniques: fluorescence polarization immunoassay (FPIA) and chimiluminescent microparticle immunoassay (CMIA). In this study, we aimed to compare the results of CsA concentrations measured by the two automised techniques. Statistical studies showed that the two techniques were repeatable and reproductible. Results obtained by FPIA were slightly higher than those obtained by CMIA but without a significative difference. In conclusion, FPIA technique could be used to measure CsA blood concentration in replacement of CMIA in case of technical problems.

  17. Comparative study on efficacy of three sperm-separation techniques

    Institute of Scientific and Technical Information of China (English)

    LanXU; Ren-KangLU; LingCHEN; Yan-LuanZHENG

    2000-01-01

    Aim: To evaluate the comparative effectiveness of real-time sperm separation technique (Wang's tube method) and other two conventional methods in isolating high-quality sperm preparation, and to compare the spouse pregnancy rate in intrauterine insemination (IUI) with sperm preparations isolated by these methods. Methods: The effectiveness of the real-time sperm separation technique, the conventional swim-up and the Percoll discontinuous density gradient methods in isolating sperm preparations from 60 infertile patients (20 with apparently normal semen and 40, abnormal semen contaminated with microorganisms and other impurities) was evaluated and compared. The microorganisms to bere moved included bacteria, virus, Chlamydia trachomaticum, Ureaplsama urealyticum, etc. The spouse pregnancy rates in IUI with sperm preparations isolated by these three techniques from 80 oligoasthenoteratospermic patients werealso compared. Results: The quality (including the percentages of normal form, normal-chromatin and motilesperm, and the grade of motility) of sperm obtained by the real-time sperm separation technique was much higher ( P<0.01 ) as compared with those by the other two methods. The Wang's tube method was also more effective in removing microorganisms and other impurities. The method provided a higher IUI pregnancy rate than the other two sperm separation techniques ( P < 0.05). Conclusion: The real-time sperm separation technique is the most effective method so far available in isolating high-quality sperm samples to be used in assisted reproduction.

  18. Comparing mRNA levels using in situ hybridization of a target gene and co-stain.

    Science.gov (United States)

    Wunderlich, Zeba; Bragdon, Meghan D; DePace, Angela H

    2014-06-15

    In situ hybridization is an important technique for measuring the spatial expression patterns of mRNA in cells, tissues, and whole animals. However, mRNA levels cannot be compared across experiments using typical protocols. Here we present a semi-quantitative method to compare mRNA levels of a gene across multiple samples. This method yields an estimate of the error in the measurement to allow statistical comparison. Our method uses a typical in situ hybridization protocol to stain for a target gene and an internal standard, which we refer to as a co-stain. As a proof of concept, we apply this method to multiple lines of transgenic Drosophila embryos, harboring constructs that express reporter genes to different levels. We generated this test set by mutating enhancer sequences to contain different numbers of binding sites for Zelda, a transcriptional activator. We demonstrate that using a co-stain with in situ hybridization is an effective method to compare mRNA levels across samples. This method requires only minor modifications to existing in situ hybridization protocols and uses straightforward analysis techniques. This strategy can be broadly applied to detect quantitative, spatially resolved changes in mRNA levels.

  19. Constrained Optimization Based on Hybrid Evolutionary Algorithm and Adaptive Constraint-Handling Technique

    DEFF Research Database (Denmark)

    Wang, Yong; Cai, Zixing; Zhou, Yuren

    2009-01-01

    A novel approach to deal with numerical and engineering constrained optimization problems, which incorporates a hybrid evolutionary algorithm and an adaptive constraint-handling technique, is presented in this paper. The hybrid evolutionary algorithm simultaneously uses simplex crossover and two...... mutation operators to generate the offspring population. Additionally, the adaptive constraint-handling technique consists of three main situations. In detail, at each situation, one constraint-handling mechanism is designed based on current population state. Experiments on 13 benchmark test functions...... and four well-known constrained design problems verify the effectiveness and efficiency of the proposed method. The experimental results show that integrating the hybrid evolutionary algorithm with the adaptive constraint-handling technique is beneficial, and the proposed method achieves competitive...

  20. Large-scale multi-zone optimal power dispatch using hybrid hierarchical evolution technique

    Directory of Open Access Journals (Sweden)

    Manjaree Pandit

    2014-03-01

    Full Text Available A new hybrid technique based on hierarchical evolution is proposed for large, non-convex, multi-zone economic dispatch (MZED problems considering all practical constraints. Evolutionary/swarm intelligence-based optimisation techniques are reported to be effective only for small/medium-sized power systems. The proposed hybrid hierarchical evolution (HHE algorithm is specifically developed for solving large systems. The HHE integrates the exploration and exploitation capabilities of particle swarm optimisation and differential evolution in a novel manner such that the search efficiency is improved substantially. Most hybrid techniques export or exchange features or operations from one algorithm to the other, but in HHE their entire individual features are retained. The effectiveness of the proposed algorithm has been verified on six-test systems having different sizes and complexity levels. Non-convex MZED solution for such large and complex systems has not yet been reported.

  1. Effect of bone decalcification procedures on DNA in situ hybridization and comparative genomic hybridization. EDTA is highly preferable to a routinely used acid decalcifier

    NARCIS (Netherlands)

    J.C. Alers (Janneke); P-J. Krijtenburg (Pieter-Jaap); K.J. Vissers (Kees); H. van Dekken (Herman)

    1999-01-01

    textabstractDecalcification is routinely performed for histological studies of bone-containing tissue. Although DNA in situ hybridization (ISH) and comparative genomic hybridization (CGH) have been successfully employed on archival material, little has been reported on

  2. Comparative genomic and in situ hybridization of germ cell tumors of the infantile testis

    NARCIS (Netherlands)

    Mostert, M; Rosenberg, C; Stoop, H; Schuyer, M; Timmer, A; Oosterhuis, W; Looijenga, L

    2000-01-01

    Chromosomal information on germ cell tumors of the infantile testis, ie, teratomas and yolk sac tumors, is limited and controversial. We studied two teratomas and four yolk sac tumors using comparative genomic hybridization (CGH) and in situ hybridization. No chromosomal anomalies were found in the

  3. Single Molecule Techniques for Advanced in situ Hybridization

    Energy Technology Data Exchange (ETDEWEB)

    Hollars, C W; Stubbs, L; Carlson, K; Lu, X; Wehri, E

    2003-02-03

    One of the most significant achievements of modern science is completion of the human genome sequence, completed in the year 2000. Despite this monumental accomplishment, researchers have only begun to understand the relationships between this three-billion-nucleotide genetic code and the regulation and control of gene and protein expression within each of the millions of different types of highly specialized cells. Several methodologies have been developed for the analysis of gene and protein expression in situ, yet despite these advancements, the pace of such analyses is extremely limited. Because information regarding the precise timing and location of gene expression is a crucial component in the discovery of new pharmacological agents for the treatment of disease, there is an enormous incentive to develop technologies that accelerate the analytical process. Here we report on the use of plasmon resonant particles as advanced probes for in situ hybridization. These probes are used for the detection of low levels of gene-probe response and demonstrate a detection method that enables precise, simultaneous localization within a cell of the points of expression of multiple genes or proteins in a single sample.

  4. A hybrid classifier using the parallelepiped and Bayesian techniques. [for multispectral image data

    Science.gov (United States)

    Addington, J. D.

    1975-01-01

    A versatile classification scheme is developed which uses the best features of the parallelepiped algorithm and the Bayesian maximum likelihood algorithm. The parallelepiped technique has the advantage of being very fast, especially when implemented into a table look-up scheme; its disadvantage is its inability to distinguish and classify spectral signatures which are similar in nature. This disadvantage is eliminated by the Bayesian technique which is capable of distinguishing subtle differences very well. The hybrid algorithm developed reduces computer time by as much as 90%. A two- and n-dimensional description of the hybrid classifier is given.

  5. A review of the hybrid techniques for the fabrication of hard magnetic microactuators based on bonded magnetic powders

    Science.gov (United States)

    Pallapa, M.; Yeow, J. T. W.

    2015-02-01

    Polymer composites based on permanent magnetic bonded powders exhibit immense potential for applications in microactuators and sensors with magnetic performances comparable to their fully dense counterparts. While fabrication and integration of magnetic devices based on bonded magnetic powders is challenging via conventional deposition and electrochemical growth techniques, hybrid fabrication offers a promising alternative. This paper presents the evolution of permanent magnetic materials into bonded magnetic powders, the magnetic performance figures of merit of permanent magnetic materials significant for the design and manufacture of polymer based sensors and actuators. A review of the hybrid fabrication techniques such as replica molding, squeegee coating, spin casting etc are reported. Critical factors affecting the fabrication of polymer magnetic composites such as filler particle size and effect of magnetic field during fabrication are discussed. Prior art based on polymer magnetic composites for the fabrication of hard magnetic films and hard magnetic actuators are presented.

  6. Mixed potential integral equation technique for hybrid microstrip-slotline multilayered circuits using a mixed rectangular-triangular mesh

    Science.gov (United States)

    Sercu, Jeannick; Fache, Niels; Libbrecht, Frank; Lagasse, Paul

    1995-05-01

    In this paper, a mixed potential integral equation (MPIE) formulation for hybrid microstrip-slotline multilayered circuits is presented. This integral equation is solved with the method of moments (MoM) in combination with Galerkin's method. The vector-valued rooftop functions defined over a mixed rectangular-triangular mesh are used to model the electric and magnetic currents on the microstrip and slotline structures. An efficient calculation technique for the quadruple interaction integrals between two cells in the system matrix equation is presented. Two examples of hybrid microstrip-slotline circuits are discussed. The first example compares the simulation results for a microstrip-slotline transition with measured data. The second example illustrates the use of the simulation technique in the design process of a broadband slot-coupled microstrip line transition.

  7. Techniques for preparing of guide planes: in vitro comparative study

    OpenAIRE

    Uemura, Eduardo Shigueyuki; Assistant Professor of the Dental Materials and Prosthesis Department of the São José dos Campos School of Dentistry of the São Paulo State University.; Silva, João Maurício; Faculdade de Odontologia de São José dos Campos - UNESP; Borges, Alexandre Luiz Souto; Assistant Professor of the Dental Materials and Prosthesis Department of the São José dos Campos School of Dentistry of the São Paulo State University.; Yamamoto, Eron Toshio Colauto; Clinical Professor of the Dental Materials and Prosthesis Department of the School of Dentistry of the 9th of July University.

    2014-01-01

    The correct parallelism of guiding planes when constructing a Removable Partial Denture not only defines the axis of insertion and removal of the prosthesis, but also limits the possible axes of movement during functioning. Therefore, the purpose of the study was to compare some techniques and the use of an intra-oral device for those preparations. Dummies were performed in a direct manner, simulating the absence of teeth 15, 45, 12 and 42. The four preparation techniques chosen were: Group 1...

  8. Application of Microarray-Based Comparative Genomic Hybridization in Prenatal and Postnatal Settings: Three Case Reports

    Directory of Open Access Journals (Sweden)

    Jing Liu

    2011-01-01

    Full Text Available Microarray-based comparative genomic hybridization (array CGH is a newly emerged molecular cytogenetic technique for rapid evaluation of the entire genome with sub-megabase resolution. It allows for the comprehensive investigation of thousands and millions of genomic loci at once and therefore enables the efficient detection of DNA copy number variations (a.k.a, cryptic genomic imbalances. The development and the clinical application of array CGH have revolutionized the diagnostic process in patients and has provided a clue to many unidentified or unexplained diseases which are suspected to have a genetic cause. In this paper, we present three clinical cases in both prenatal and postnatal settings. Among all, array CGH played a major discovery role to reveal the cryptic and/or complex nature of chromosome arrangements. By identifying the genetic causes responsible for the clinical observation in patients, array CGH has provided accurate diagnosis and appropriate clinical management in a timely and efficient manner.

  9. Staging of recurrent and advanced lung cancer with 18F-FDG PET in a coincidence technique (hybrid PET).

    Science.gov (United States)

    Schmid, R A; Hautmann, H; Poellinger, B; Kellner, W; Moisseev, A; Brinkbaeumer, K; Weiss, M; Hahn, K; Dresel, S

    2003-01-01

    The aim of this study was to evaluate [18F]fluorodeoxyglucose ( F-FDG) imaging of recurrent or inoperable lung cancer using a hybrid positron emission tomography (PET) device of the third generation. Examinations were compared with the results of conventional staging. Thirty-six patients suffering from recurrent or primarily inoperable lung cancer (29 men, seven women; age 64.8+/-12.0 years) were examined using hybrid PET (Marconi Axis gamma-PET ) 60 min after injection of 370 MBq F-FDG. The data obtained were reconstructed iteratively. All patients received a computed tomography (CT) scan using either the spiral or multislice technique. All lesions suspicious for primary or recurrent tumour were verified by biopsy; mediastinal lymph nodes were considered as malignant, when positive histology or a small axis diameter of greater than 1 cm measured with CT in addition to progression of clinical course was found. Distant metastases were diagnosed by CT and bone scintigraphy. Using hybrid PET all lesions showed a focally elevated glucose metabolism. Lymph node involvement of the ipsilateral peribronchial and hilar station (N1) was identified in 24/26 cases (92%), in 26/29 cases (90%) of ipsilateral central manifestation (N2) and in 11/13 (85%) cases of central contralateral or supraclavicular lymphatic infestation (N3). Pulmonary spread in hybrid PET was found in 4/8 cases (50%), whereas mainly lung metastases with a diameter of 1.5 cm and smaller were missed. Pleural involvement diagnosed by CT was verified in 4/5 patients. All four patients with bony metastases in conventional staging also presented with positive findings in hybrid PET (8/9 lesions). Concordance with conventional staging was found in 28/36 of patients (78%). In 4/36 patients (11%) unknown sites of tumour were detected leading to therapeutic consequences in three patients after radiological confirmation. Hybrid PET would have led to an understaging in four cases (11%), resulting theoretically in

  10. Chromosomal imbalances detected in primary bone tumors by comparative genomic hybridization and interphase fluorescence in situ hybridization

    OpenAIRE

    Baruffi Marcelo Razera; Engel Edgard Edward; Squire Jeremy Andrew; Tone Luis Gonzaga; Rogatto Silvia Regina

    2003-01-01

    We applied a combination of comparative genomic hybridization (CGH) and fluorescence in situ hybridization (FISH), to characterize the genetic aberrations in three osteosarcomas (OS) and one Ewing's sarcoma. CGH identified recurrent chromosomal losses at 10p14-pter and gains at 8q22.3-24.1 in OS. Interphase FISH allowed to confirm 8q gain in two cases. A high amplification level of 11q12-qter was detected in one OS. The Ewing's sarcoma showed gain at 1p32-36.1 as the sole chromosome alteratio...

  11. Comparative genomic hybridization array study and its utility in detection of constitutional and acquired anomalies.

    Science.gov (United States)

    Andrieux, Joris; Sheth, Frenny

    2009-10-01

    The last decade has witnessed an upsurge in the knowledge of cytogenetic disorders and putting the old technology in a new basket with molecular genetics. As conventional cytogenetic can detect the genetic alteration of 10-15 Mb, many of the micro-deletions and micro-duplications are missed. However, with the advent of technology of fluorescence in situ hybridization (FISH), the resolution of genetic aberrations can reach to 3-5 Mb, nonetheless the anomalies smaller than the above, need further precision which has been achieved using comparative genomic hybridization array (CGH-array). Introduction of array-CGH has brought higher sensitivity with automated DNA fragment analyzer and DNA chip for submicroscopic chromosomal anomalies that are missed till date in many of the acquired and constitutional genetic disorders. The resolution of the technology varies from several Kb to 1 Mb depending upon the type of array selected. With the recent improvement in the array-CGH technology, a link between cytogenetic and molecular biology has been established without replacing conventional cytogenetic technique. The wider accessibility of the technology shall certainly provide a clue to the many unidentified/unexplained genetic disorders which shall prove to be a boon to the clinicians.

  12. [Stereoscopic neuroanatomy: comparative study between anaglyphic and light polarization techniques].

    Science.gov (United States)

    Meneses, Murilo Sousa; Cruz, André Vieira; Castro, Izara Almeida; Pedrozo, Ari A

    2002-09-01

    The need of didactic material is increasing in medical science nowadays. The lack of anatomical specimens, and the toxicity of conservators, have originated an intense search for alternative ways of demonstrating the human anatomy. As a solution for this difficulty, three-dimensional (3-D) images may be used, facilitating the learning process. This study aims at comparing and describing two techniques of reproduction of bi-dimensional images into three dimensions, which is called stereoscopy. The methods evaluated are filter of colors (anaglyphic) and polarized light. Techniques were analyzed for clearness and 3-D effect. Fourteen images were evaluated by 5 people, with scores ranging from 0 to 4. Total mean scores of polarized light was superior compared to the anaglyphic technique. Both methods use the codification of the image, which means separation and exclusivity with each eye seeing its corresponding image. After several photographic essays and gradual adaptation to a better technique, based on optical physics, photography and neuroanatomical knowledge, we concluded that both techniques are suitable means for production of 3-D images. The best technique, however, considering the final quality of image was polarized light, which did not alter the natural color of the specimen, conserving clearness of images with lower cost.

  13. A Hybrid Neural Network-Genetic Algorithm Technique for Aircraft Engine Performance Diagnostics

    Science.gov (United States)

    Kobayashi, Takahisa; Simon, Donald L.

    2001-01-01

    In this paper, a model-based diagnostic method, which utilizes Neural Networks and Genetic Algorithms, is investigated. Neural networks are applied to estimate the engine internal health, and Genetic Algorithms are applied for sensor bias detection and estimation. This hybrid approach takes advantage of the nonlinear estimation capability provided by neural networks while improving the robustness to measurement uncertainty through the application of Genetic Algorithms. The hybrid diagnostic technique also has the ability to rank multiple potential solutions for a given set of anomalous sensor measurements in order to reduce false alarms and missed detections. The performance of the hybrid diagnostic technique is evaluated through some case studies derived from a turbofan engine simulation. The results show this approach is promising for reliable diagnostics of aircraft engines.

  14. Hybrid inverse lithography techniques for advanced hierarchical memories

    Science.gov (United States)

    Xiao, Guangming; Hooker, Kevin; Irby, Dave; Zhang, Yunqiang; Ward, Brian; Cecil, Tom; Hall, Brett; Lee, Mindy; Kim, Dave; Lucas, Kevin

    2014-03-01

    Traditional segment-based model-based OPC methods have been the mainstream mask layout optimization techniques in volume production for memory and embedded memory devices for many device generations. These techniques have been continually optimized over time to meet the ever increasing difficulties of memory and memory periphery patterning. There are a range of difficult issues for patterning embedded memories successfully. These difficulties include the need for a very high level of symmetry and consistency (both within memory cells themselves and between cells) due to circuit effects such as noise margin requirements in SRAMs. Memory cells and access structures consume a large percentage of area in embedded devices so there is a very high return from shrinking the cell area as much as possible. This aggressive scaling leads to very difficult resolution, 2D CD control and process window requirements. Additionally, the range of interactions between mask synthesis corrections of neighboring areas can extend well beyond the size of the memory cell, making it difficult to fully take advantage of the inherent designed cell hierarchy in mask pattern optimization. This is especially true for non-traditional (i.e., less dependent on geometric rule) OPC/RET methods such as inverse lithography techniques (ILT) which inherently have more model-based decisions in their optimizations. New inverse methods such as model-based SRAF placement and ILT are, however, well known to have considerable benefits in finding flexible mask pattern solutions to improve process window, improve 2D CD control, and improve resolution in ultra-dense memory patterns. They also are known to reduce recipe complexity and provide native MRC compliant mask pattern solutions. Unfortunately, ILT is also known to be several times slower than traditional OPC methods due to the increased computational lithographic optimizations it performs. In this paper, we describe and present results for a methodology to

  15. Genomic characterization of some Iranian children with idiopathic mental retardation using array comparative genomic hybridization

    Directory of Open Access Journals (Sweden)

    Farkhondeh Behjati

    2013-01-01

    Full Text Available Background: Mental retardation (MR has a prevalence of 1-3% and genetic causes are present in more than 50% of patients. Chromosomal abnormalities are one of the most common genetic causes of MR and are responsible for 4-28% of mental retardation. However, the smallest loss or gain of material visible by standard cytogenetic is about 4 Mb and for smaller abnormalities, molecular cytogenetic techniques such as array comparative genomic hybridization (array CGH should be used. It has been shown that 15-25% of idiopathic MR (IMR has submicroscopic rearrangements detectable by array CGH. In this project, the genomic abnormalities were investigated in 32 MR patients using this technique. Materials and Methods: Patients with IMR with dysmorphism were investigated in this study. Karyotype analysis, fragile X and metabolic tests were first carried out on the patients. The copy number variation was then assessed in a total of 32 patients with normal results for the mentioned tests using whole genome oligo array CGH. Multiple ligation probe amplification was carried out as a confirmation test. Results: In total, 19% of the patients showed genomic abnormalities. This is reduced to 12.5% once the two patients with abnormal karyotypes (upon re-evaluation are removed. Conclusion: The array CGH technique increased the detection rate of genomic imbalances in our patients by 12.5%. It is an accurate and reliable method for the determination of genomic imbalances in patients with IMR and dysmorphism.

  16. Comparative study of nail sampling techniques in onychomycosis.

    Science.gov (United States)

    Shemer, Avner; Davidovici, Batya; Grunwald, Marcelo H; Trau, Henri; Amichai, Boaz

    2009-07-01

    Onychomycosis is a common problem. Obtaining accurate laboratory test results before treatment is important in clinical practice. The purpose of this study was to compare results of curettage and drilling techniques of nail sampling in the diagnosis of onychomycosis, and to establish the best technique and location of sampling. We evaluated 60 patients suffering from distal and lateral subungual onychomycosis and lateral subungual onychomycosis using curettage and vertical and horizontal drilling sampling techniques from three different sites of the infected nail. KOH examination and fungal culture were used for detection and identification of fungal infection. At each sample site, the horizontal drilling technique has a better culture sensitivity than curettage. Trichophyton rubrum was by far the most common pathogen detected by both techniques from all sampling sites. The drilling technique was found to be statistically better than curettage at each site of sampling, furthermore vertical drilling from the proximal part of the affected nail was found to be the best procedure for nail sampling. With each technique we found that the culture sensitivity improved as the location of the sample was more proximal. More types of pathogens were detected in samples taken by both methods from proximal parts of the affected nails.

  17. A Robust Hybrid Video Watermarking Technique using Mosaicing

    Directory of Open Access Journals (Sweden)

    Jeebananda Panda

    2014-10-01

    Full Text Available Video Watermarking is the technique by which some information is inserted in the video which can be extracted later. It provides protection against any kind of illegal manipulation by third party. In this paper , a non -blind watermarking scheme is proposed which is based on the combination of Discrete Wavelet Transform,(DWT, Discrete Cosine Transform (DCT and Singular Value Decomposition (SVD.The watermark is embedded in the mosaic formed from the frames of the video by modifying the DCT coefficients of LL1 (low frequency sub-band obtained by applying 1-level DWT on the mosaic followed by diagonal based modification of singular value matrix which is obtained by SVD decomposition of LL2 (low frequency sub-band obtained by applying 2-level DWT on the modified LL1.The experimental values of PSNR, Correlation Factor show that the above proposed scheme is imperceptible, secure and robust against various types of attacks.

  18. A Comparative Study of Ranging Techniques in Deep Space Applications

    Science.gov (United States)

    Cong, Bo; Mao, Nanping; Tao, Xiaohong

    2016-02-01

    In this paper, main ranging techniques in deep space applications are elaborated and analyzed. Their ranging accuracy, acquisition time and complexity are compared. It is shown that the code-tone ranging method has obvious advantage over others in deep space tracking. Start your abstract here...

  19. A Discrete Wavelet Based Feature Extraction and Hybrid Classification Technique for Microarray Data Analysis

    Directory of Open Access Journals (Sweden)

    Jaison Bennet

    2014-01-01

    Full Text Available Cancer classification by doctors and radiologists was based on morphological and clinical features and had limited diagnostic ability in olden days. The recent arrival of DNA microarray technology has led to the concurrent monitoring of thousands of gene expressions in a single chip which stimulates the progress in cancer classification. In this paper, we have proposed a hybrid approach for microarray data classification based on nearest neighbor (KNN, naive Bayes, and support vector machine (SVM. Feature selection prior to classification plays a vital role and a feature selection technique which combines discrete wavelet transform (DWT and moving window technique (MWT is used. The performance of the proposed method is compared with the conventional classifiers like support vector machine, nearest neighbor, and naive Bayes. Experiments have been conducted on both real and benchmark datasets and the results indicate that the ensemble approach produces higher classification accuracy than conventional classifiers. This paper serves as an automated system for the classification of cancer and can be applied by doctors in real cases which serve as a boon to the medical community. This work further reduces the misclassification of cancers which is highly not allowed in cancer detection.

  20. A Proposed Hybrid Technique for Recognizing Arabic Characters

    Directory of Open Access Journals (Sweden)

    S F Bahgat

    2012-07-01

    Full Text Available Optical character recognition systems improve human-machine interaction and are urgently required for many governmental and commercial departments. A considerable progress in the recognition techniques of Latin and Chinese characters has been achieved. By contrast, Arabic Optical Character Recognition (AOCR is still lagging although the interest and research in this area is becoming more intensive than before. This is because the Arabic is a cursive language, written from right to left, each character has two to four different forms according to its position in the word, and most characters are associated with complementary parts above, below, or inside the character. The process of Arabic character recognition passes through several stages; the most serious and error-prone of which are segmentation, and feature extraction & classification. This research focuses on the feature extraction and classification stage, being as important as the segmentation stage. Features can be classified into two categories; Local features, which are usually geometric, and Global features, which are either topological or statistical. Four approaches related to the statistical category are to be investigated, namely: Moment Invariants, Gray Level Co-occurrence Matrix, Run Length Matrix, and Statistical Properties of Intensity Histogram. The paper aims at fusing the features of these methods to get the most representative feature vector that maximizes the recognition rate.

  1. DOES PRODUCTIVITY MATTER IN THE ADOPTION OF HYBRID RICE? A COMPARATIVE STUDY

    Directory of Open Access Journals (Sweden)

    Rashed Saeed

    2013-12-01

    Full Text Available The present study was designed to analyze comparative economics of hybrid rice and basmati in the core rice growing area of Punjab. Cross-data was collected through well-structured questionnaires from 80 farmers during May and June 2011.Study results reveal that higher yield and less time required for maturity in production were the main reasons for planting of hybrid rice. Hybrid rice occupied 3.6 acres whereas area under basmati was 5.9 acres of the total farm area. Farmers obtained above 60 percent increase in yield of hybrid rice. Results show that cost of production of basmati rice was estimated as Rs.37364 per acre and total revenue was Rs.44768 per acre. The benefit cost ratio of basmati rice was 1.20 and that of hybrid rice was 1.80, implying that hybrid rice has brought comparatively more economic benefits to the farmers as compared to basmati in the study area. Shortage of buyers, much costly poor quality hybrid seed, late payment and higher transportation costs are among major constraints in rice production and marketing.

  2. A Polar Fuzzy Control Scheme for Hybrid Power System Using Vehicle-To-Grid Technique

    Directory of Open Access Journals (Sweden)

    Mohammed Elsayed Lotfy

    2017-07-01

    Full Text Available A novel polar fuzzy (PF control approach for a hybrid power system is proposed in this research. The proposed control scheme remedies the issues of system frequency and the continuity of demand supply caused by renewable sources’ uncertainties. The hybrid power system consists of a wind turbine generator (WTG, solar photovoltaics (PV, a solar thermal power generator (STPG, a diesel engine generator (DEG, an aqua-electrolyzer (AE, an ultra-capacitor (UC, a fuel-cell (FC, and a flywheel (FW. Furthermore, due to the high cost of the battery energy storage system (BESS, a new idea of vehicle-to-grid (V2G control is applied to use the battery of the electric vehicle (EV as equivalent to large-scale energy storage units instead of small batteries to improve the frequency stability of the system. In addition, EV customers’ convenience is taken into account. A minimal-order observer is used to estimate the supply error. Then, the area control error (ACE signal is calculated in terms of the estimated supply error and the frequency deviation. ACE is considered in the frequency domain. Two PF approaches are utilized in the intended system. The mission of each controller is to mitigate one frequency component of ACE. The responsibility for ACE compensation is shared among all parts of the system according to their speed of response. The performance of the proposed control scheme is compared to the conventional fuzzy logic control (FLC. The effectiveness and robustness of the proposed control technique are verified by numerical simulations under various scenarios.

  3. Locomotion training of legged robots using hybrid machine learning techniques

    Science.gov (United States)

    Simon, William E.; Doerschuk, Peggy I.; Zhang, Wen-Ran; Li, Andrew L.

    1995-01-01

    In this study artificial neural networks and fuzzy logic are used to control the jumping behavior of a three-link uniped robot. The biped locomotion control problem is an increment of the uniped locomotion control. Study of legged locomotion dynamics indicates that a hierarchical controller is required to control the behavior of a legged robot. A structured control strategy is suggested which includes navigator, motion planner, biped coordinator and uniped controllers. A three-link uniped robot simulation is developed to be used as the plant. Neurocontrollers were trained both online and offline. In the case of on-line training, a reinforcement learning technique was used to train the neurocontroller to make the robot jump to a specified height. After several hundred iterations of training, the plant output achieved an accuracy of 7.4%. However, when jump distance and body angular momentum were also included in the control objectives, training time became impractically long. In the case of off-line training, a three-layered backpropagation (BP) network was first used with three inputs, three outputs and 15 to 40 hidden nodes. Pre-generated data were presented to the network with a learning rate as low as 0.003 in order to reach convergence. The low learning rate required for convergence resulted in a very slow training process which took weeks to learn 460 examples. After training, performance of the neurocontroller was rather poor. Consequently, the BP network was replaced by a Cerebeller Model Articulation Controller (CMAC) network. Subsequent experiments described in this document show that the CMAC network is more suitable to the solution of uniped locomotion control problems in terms of both learning efficiency and performance. A new approach is introduced in this report, viz., a self-organizing multiagent cerebeller model for fuzzy-neural control of uniped locomotion is suggested to improve training efficiency. This is currently being evaluated for a possible

  4. Organic Scintillators in Nonproliferation Applications With a Hybridized Double-Pulse Rejection Technique

    Science.gov (United States)

    Bourne, Mark Mitchell

    Alternative detection technologies are crucial to meeting demand for neutron detectors, for the current production of He-3, which has been the classical neutron choice, is insufficient. Organic scintillators are a strong candidate as a He-3 alternative due to their high efficiency, fast timing properties, and capabilities for separately identifying gamma-rays and neutrons through pulse shape discrimination (PSD). However, the use of organic scintillators in environments with numerous gamma rays can be limited because overlapping gamma-ray events can be misclassified as neutron events during PSD. To solve this problem, a new, hybridized double-pulse cleaning technique, consisting of three separate cleaning algorithms, was developed. The technique removes gamma-ray double pulses while preserving as many neutron pulses as possible. This technique was applied to separate experiments of Cf-252 and a gamma-ray source when measuring at a 100-kHz count rate and a field of 1000 incident gamma rays per incident neutron. It was found that stilbene scintillators were capable of intrinsic neutron efficiencies between 15-19% when measuring bare Cf-252 and 13-17% when exposed to the gamma-ray field. Misclassification rates ranged from 10-6-10-5, a factor-of-5 better than both the EJ-309 liquid and BB3-5 plastic. Next, plutonium experiments were performed with stilbene to determine which cleaning algorithm was best for each sample. A clear correlation was found that related the correct method of cleaning to the measured gamma ray-to-neutron ratio. When the measured gamma ray-to-neutron ratio is 10 or below, the template cleaning algorithm is preferred, while the fractional and hybrid cleaning algorithms are preferred when the gamma ray-to-neutron ratio is 100 or greater. Discriminating neutron sources such as Cf-252 or AmLi from SNM samples such as plutonium is a top priority in nonproliferation. We demonstrate that time-correlated experiments, utilizing both PSD-capable plastic

  5. Experimental analysis of oligonucleotide microarray design criteria to detect deletions by comparative genomic hybridization

    Directory of Open Access Journals (Sweden)

    Moerman Donald G

    2008-10-01

    Full Text Available Abstract Background Microarray comparative genomic hybridization (CGH is currently one of the most powerful techniques to measure DNA copy number in large genomes. In humans, microarray CGH is widely used to assess copy number variants in healthy individuals and copy number aberrations associated with various diseases, syndromes and disease susceptibility. In model organisms such as Caenorhabditis elegans (C. elegans the technique has been applied to detect mutations, primarily deletions, in strains of interest. Although various constraints on oligonucleotide properties have been suggested to minimize non-specific hybridization and improve the data quality, there have been few experimental validations for CGH experiments. For genomic regions where strict design filters would limit the coverage it would also be useful to quantify the expected loss in data quality associated with relaxed design criteria. Results We have quantified the effects of filtering various oligonucleotide properties by measuring the resolving power for detecting deletions in the human and C. elegans genomes using NimbleGen microarrays. Approximately twice as many oligonucleotides are typically required to be affected by a deletion in human DNA samples in order to achieve the same statistical confidence as one would observe for a deletion in C. elegans. Surprisingly, the ability to detect deletions strongly depends on the oligonucleotide 15-mer count, which is defined as the sum of the genomic frequency of all the constituent 15-mers within the oligonucleotide. A similarity level above 80% to non-target sequences over the length of the probe produces significant cross-hybridization. We recommend the use of a fairly large melting temperature window of up to 10°C, the elimination of repeat sequences, the elimination of homopolymers longer than 5 nucleotides, and a threshold of -1 kcal/mol on the oligonucleotide self-folding energy. We observed very little difference in data

  6. The Comparative study of Automated Face replacement Techniques for Video

    Directory of Open Access Journals (Sweden)

    Harmesh Sanghvi

    2014-03-01

    Full Text Available For entertaining purposes, a computerized special effect referred to as “morphing” has enlarged huge attention and face replacement is one of the interesting tasks. Face replacement in video is a useful application in the amusement and special effect industries. Though various techniques for face replacement have been developed for single image and generally applied in animation and morphing, there are few mechanisms to spread out these techniques to handle videos automatically. Face replacement in video automatically is not only a fascinating application, but a challenging problem. For face replacement in video, the frame-by-frame manipulation process using the software is often time consuming and labor-intensive. Hence, the paper compares numerous latest Automatic face replacement techniques in video to understand the various problems to be solved, their shortcomings and benefits over others.

  7. Indirect porcelain veneers in periodontally compromised teeth. The hybrid technique: a case report.

    Science.gov (United States)

    Garcia-Baeza, David; Saavedra, Carlos; Garcia-Adámez, Ramón

    2015-01-01

    The loss of periodontal structure causes an esthetic problem for many patients, especially when the esthetic zone is compromised. Among the various types of solutions is the use of composite resins. While this procedure is not aggressive towards tooth structure, it does require the clinician to have a precise technique, and demands strict longterm maintenance. 1 Another way of treating the compromised teeth is with porcelain veneers. This procedure is especially difficult, however, if carried out on periodontal teeth, as it requires preparation along the roots. 2 The intention of the hybrid technique described in this article is to combine both of these procedures in order to obtain a less aggressive treatment with precise management of the soft tissue and an adequate esthetic outcome. The hybrid technique consists of enlarging the root portion of the teeth with composite resin to obtain a less aggressive tooth preparation, and thereafter placing porcelain veneers.

  8. Three different surgical techniques of crown lengthening: A comparative study

    Directory of Open Access Journals (Sweden)

    Ramya Nethravathy

    2013-01-01

    Full Text Available Introduction: A short clinical crown may lead to poor retention form thereby leading to improper tooth preparation. Surgical crown lengthening procedure is done to increase the clinical crown length without violating the biologic width. Several techniques have been proposed for clinical crown lengthening which includes gingivectomy, apically displaced flap with or without resective osseous surgery, and surgical extrusion using periotome. Objective: The aim of this paper is to compare clinically the three different surgical techniques of crown lengthening procedures. Materials and Methods: Fifteen patients who reported to the department of Periodontology, were included in the study. Patients were randomly divided into three groups, which include patients who underwent gingivectomy (Group A, apically repositioned flap (Group B and surgical extrusion using periotome (Group C. Clinical measurements such as clinical crown length, gingival zenith, interdental papilla height were taken at baseline and at 3 rd month post-operatively. Results: Clinical and radiographic evaluation at 3 rd month suggest that surgical extrusion technique offers several advantages over the other conventional surgical techniques such as preservation of the interproximal papilla, gingival margin position and no marginal bone loss. Conclusions: This technique can be used to successfully treat a grossly damaged crown structure as a result of tooth fracture, dental caries and iatrogenic factors especially in the anterior region, where esthetics is of great concern.

  9. Three different surgical techniques of crown lengthening: A comparative study

    OpenAIRE

    Ramya Nethravathy; Santhana Krishnan Vinoth; Ashwin Varghese Thomas

    2013-01-01

    Introduction: A short clinical crown may lead to poor retention form thereby leading to improper tooth preparation. Surgical crown lengthening procedure is done to increase the clinical crown length without violating the biologic width. Several techniques have been proposed for clinical crown lengthening which includes gingivectomy, apically displaced flap with or without resective osseous surgery, and surgical extrusion using periotome. Objective: The aim of this paper is to compare clinical...

  10. N-doped ZnO films grown from hybrid target by the pulsed laser deposition technique

    Science.gov (United States)

    Martín-Tovar, E. A.; Chan y Díaz, E.; Acosta, M.; Castro-Rodríguez, R.; Iribarren, A.

    2016-10-01

    ZnO thin films were grown by the pulsed laser deposition technique on glass substrate using a hybrid target composed of ZnO powder embedded into a poly(ethyl cyanoacrylate) matrix. The resulting thin film presented ZnO wurtzite structure with very low stress and diffractogram very similar to that of the powder pattern. From comparing with ZnO thin films grown from traditional sintered target, it is suggested that the use of this hybrid target with a soft matrix led to ejection of ZnO clusters that conveniently disposed and adhered to substrate and previous deposited layers. Chemical measurements showed the presence of Zn-N bonds, besides Zn-O ones. Optical absorption profile confirmed the presence of low-polymerized zinc oxynitride molecular subunits, besides ZnO.

  11. 3D Printed PEG-Based Hybrid Nanocomposites Obtained by Sol-Gel Technique.

    Science.gov (United States)

    Chiappone, Annalisa; Fantino, Erika; Roppolo, Ignazio; Lorusso, Massimo; Manfredi, Diego; Fino, Paolo; Pirri, Candido Fabrizio; Calignano, Flaviana

    2016-03-02

    In this work, three-dimensional (3D) structured hybrid materials were fabricated combining 3D printing technology with in situ generation of inorganic nanoparticles by sol-gel technique. Those materials, consisting of silica nanodomains covalently interconnected with organic polymers, were 3D printed in complex multilayered architectures, incorporating liquid silica precursors into a photocurable oligomer in the presence of suitable photoinitiators and exposing them to a digital light system. A post sol-gel treatment in acidic vapors allowed the in situ generation of the inorganic phase in a dedicated step. This method allows to build hybrid structures operating with a full liquid formulation without meeting the drawbacks of incorporating inorganic powders into 3D printable formulations. The influence of the generated silica nanoparticle on the printed objects was deeply investigated at macro- and nanoscale; the resulting light hybrid structures show improved mechanical properties and, thus, have a huge potential for applications in a variety of advanced technologies.

  12. Closure technique for the hybrid girder cable stayed bridge of Edong Bridge

    Institute of Scientific and Technical Information of China (English)

    Liu Minghu; Tan Hao; Xu GuoPing; Zhao Canhui

    2012-01-01

    Based on Edong Yangtze River Bridge, which is the second longest hybrid girder cable stayed bridge with 926 m long main span, the influencing factors and crucial techniques of the main span closure method for long span hybrid girder cable stayed bridge are studied. After theoretical analysis, numerical evaluation and practical test, the loading assistant closure method is employed in Edong Yangtze River Bridge. The loading assistant closure method, with better thermal adaptability and less influence on bridge line and the forced status, can meet the requirements of the unstressed state control method. Based on the mentioned advantages, the loading assistant closure method is applicable to long span hybrid girder cable stayed bridges. The conclusion can provide a reference for the further design of the similar brid~es.

  13. Shared Y chromosome repetitive DNA sequences in stallion and donkey as visualized using whole-genomic comparative hybridization

    Directory of Open Access Journals (Sweden)

    R. Mezzanotte

    2010-01-01

    Full Text Available The genome of stallion (Spanish breed and donkey (Spanish endemic Zamorano-Leonés were compared using whole comparative genomic in situ hybridization (W-CGH technique, with special reference to the variability observed in the Y chromosome. Results show that these diverging genomes still share some highly repetitive DNA families localized in pericentromeric regions and, in the particular case of the Y chromosome, a sub-family of highly repeated DNA sequences, greatly expanded in the donkey genome, accounts for a large part of the chromatin in the stallion Y chromosome.

  14. Shared Y chromosome repetitive DNA sequences in stallion and donkey as visualized using whole-genomic comparative hybridization

    Directory of Open Access Journals (Sweden)

    J. Gosalvez

    2010-01-01

    Full Text Available The genome of stallion (Spanish breed and donkey (Spanish endemic Zamorano-Leonés were compared using whole comparative genomic in situ hybridization (W-CGH technique, with special reference to the variability observed in the Y chromosome. Results show that these diverging genomes still share some highly repetitive DNA families localized in pericentromeric regions and, in the particular case of the Y chromosome, a sub-family of highly repeated DNA sequences, greatly expanded in the donkey genome, accounts for a large part of the chromatin in the stallion Y chromosome.

  15. The variable anchorage straight wire technique compared with the straight wire technique in deep overbite correction.

    Science.gov (United States)

    Banaie, Fariba; Parikakis, Konstantinos; Moberg, Svante; Hellsing, Eva

    2005-04-01

    The aim of this retrospective study was to compare the treatment results and the number of required treatment appointments between the variable anchorage straight wire technique (VAST) and the straight wire (SW) technique. The subjects were 53 Caucasian patients of both sexes (25 males and 28 females, mean age 13.5 years at the start of treatment), with an overjet > or = 4 mm and an overbite > or = 3 mm. The patients were divided into four groups, VAST (n = 31) or SW (n = 22), extraction or non-extraction, and were treated by the same orthodontist. Variables from two lateral cephalograms obtained before and at the completion of active treatment, and the number of scheduled appointments were compared between the two techniques. The main difference between the two techniques was the bracket design. With the VAST, the bracket allowed both tipping and parallel movements with the possibility to combine double archwires. Due to the influence of the Begg technique, no extra-oral traction was needed in the VAST groups and Class II elastics were used at the start of treatment. Both techniques seemed to produce equal treatment results. However, in this study, it was shown that in deep overbite correction, the VAST required fewer scheduled appointments than the SW technique.

  16. A new hybrid jpeg image compression scheme using symbol reduction technique

    CERN Document Server

    Kumar, Bheshaj; Sinha, G R

    2012-01-01

    Lossy JPEG compression is a widely used compression technique. Normally the JPEG standard technique uses three process mapping reduces interpixel redundancy, quantization, which is lossy process and entropy encoding, which is considered lossless process. In this paper, a new technique has been proposed by combining the JPEG algorithm and Symbol Reduction Huffman technique for achieving more compression ratio. The symbols reduction technique reduces the number of symbols by combining together to form a new symbol. As a result of this technique the number of Huffman code to be generated also reduced. It is simple fast and easy to implement. The result shows that the performance of standard JPEG method can be improved by proposed method. This hybrid approach achieves about 20% more compression ratio than the Standard JPEG.

  17. Hybrid single-beam reconstruction technique for slow and fast varying wave fields.

    Science.gov (United States)

    Falaggis, Konstantinos; Kozacki, Tomasz; Kujawinska, Malgorzata

    2015-06-01

    An iterative single-beam wave field reconstruction technique that employs both non-paraxial, wave propagation based and paraxial deterministic phase retrieval techniques is presented. This approach overcomes two major obstacles that exist in the current state of the art techniques: iterative methods do not reconstruct slowly varying wave fields due to slow convergence and stagnation, and deterministic methods have paraxial limits, making the reconstructions of quickly varying object features impossible. In this work, a hybrid approach is reported that uses paraxial wave field corrections within iterative phase retrieval solvers. This technique is suitable for cases ranging from slow to fast varying wave fields, and unlike the currently available methods, can also reconstruct measurement objects with different regions of both slowly and quickly varying object features. It is further shown that this technique gives a higher accuracy than current single-beam phase retrieval techniques, and in comparison to the iterative methods, has a higher convergence speed.

  18. Chromosomal imbalances detected in primary bone tumors by comparative genomic hybridization and interphase fluorescence in situ hybridization

    Directory of Open Access Journals (Sweden)

    Baruffi Marcelo Razera

    2003-01-01

    Full Text Available We applied a combination of comparative genomic hybridization (CGH and fluorescence in situ hybridization (FISH, to characterize the genetic aberrations in three osteosarcomas (OS and one Ewing's sarcoma. CGH identified recurrent chromosomal losses at 10p14-pter and gains at 8q22.3-24.1 in OS. Interphase FISH allowed to confirm 8q gain in two cases. A high amplification level of 11q12-qter was detected in one OS. The Ewing's sarcoma showed gain at 1p32-36.1 as the sole chromosome alteration. These studies demonstrate the value of molecular cytogenetic methods in the characterization of recurrent genomic alterations in bone tumor tissue.

  19. Sample preparation and in situ hybridization techniques for automated molecular cytogenetic analysis of white blood cells

    Energy Technology Data Exchange (ETDEWEB)

    Rijke, F.M. van de; Vrolijk, H.; Sloos, W. [Leiden Univ. (Netherlands)] [and others

    1996-06-01

    With the advent in situ hybridization techniques for the analysis of chromosome copy number or structure in interphase cells, the diagnostic and prognostic potential of cytogenetics has been augmented considerably. In theory, the strategies for detection of cytogenetically aberrant cells by in situ hybridization are simple and straightforward. In practice, however, they are fallible, because false classification of hybridization spot number or patterns occurs. When a decision has to be made on molecular cytogenetic normalcy or abnormalcy of a cell sample, the problem of false classification becomes particularly prominent if the fraction of aberrant cells is relatively small. In such mosaic situations, often > 200 cells have to be evaluated to reach a statistical sound figure. The manual enumeration of in situ hybridization spots in many cells in many patient samples is tedious. Assistance in the evaluation process by automation of microscope functions and image analysis techniques is, therefore, strongly indicated. Next to research and development of microscope hardware, camera technology, and image analysis, the optimization of the specimen for the (semi)automated microscopic analysis is essential, since factors such as cell density, thickness, and overlap have dramatic influences on the speed and complexity of the analysis process. Here we describe experiments that have led to a protocol for blood cell specimen that results in microscope preparations that are well suited for automated molecular cytogenetic analysis. 13 refs., 4 figs., 1 tab.

  20. A hybrid PSO technique for procuring VAR ancillary service in the deregulated electricity markets

    Energy Technology Data Exchange (ETDEWEB)

    El-Araby, E.E. [Department of Electrical Engineering, Suez Canal University (Egypt); Yorino, Naoto [Department of Artificial Complex Systems Engineering, Hiroshima University (Japan)

    2010-07-15

    This paper develops a new market-based technique for acquiring VAR ancillary service in the electricity market. The main objective of the developed market is to enable transmission operator ''TO'' to procure VAR service in a long term contract from the critical VAR providers that satisfy minimum VAR service payment while maintaining system security. Reactive power control problem for voltage stability is introduced into the VAR market problem in an explicit manner for normal and emergency states. An integration of particle swarm optimization ''PSO'' is presented with successive linear programming ''SLP'' for dealing with the VAR ancillary service problem. The problem is formulated as a large-scale nonlinear constrained optimization problem with a non-differentiable objective function representing VAR payment and operational costs. This type of problem is hard to be treated straightforwardly by the classical optimization methods. Therefore, we propose here a two-layer hybrid PSO/SLP approach, which is suited for carrying out the difficulties associated with non-differentiable and discontinuous objective functions. The proposed method has been examined on the standard IEEE 57 bus-system and compared with GA/SLP method to demonstrate its capability. (author)

  1. A Comparative Study of Several Hybrid Particle Swarm Algorithms for Function Optimization

    Directory of Open Access Journals (Sweden)

    Yanhua Zhong

    2012-11-01

    Full Text Available Currently, the researchers have made a lot of hybrid particle swarm algorithm in order to solve the shortcomings that the Particle Swarm Algorithms is easy to converge to local extremum, these algorithms declare that there has been better than the standard particle swarm. This study selects three kinds of representative hybrid particle swarm optimizations (differential evolution particle swarm optimization, GA particle swarm optimization, quantum particle swarm optimization and the standard particle swarm optimization to test with three objective functions. We compare evolutionary algorithm performance by a fixed number of iterations of the convergence speed and accuracy and the number of iterations under the fixed convergence precision; analyzing these types of hybrid particle swarm optimization results and practical performance. Test results show hybrid particle algorithm performance has improved significantly.

  2. A Comparative Study of Several Hybrid Particle Swarm Algorithms for Function Optimization

    Directory of Open Access Journals (Sweden)

    Yanhua Zhong

    2013-01-01

    Full Text Available Currently, the researchers have made a lot of hybrid particle swarm algorithm in order to solve the shortcomings that the Particle Swarm Algorithms is easy to converge to local extremum, these algorithms declare that there has been better than the standard particle swarm. This study selects three kinds of representative hybrid particle swarm optimizations (differential evolution particle swarm optimization, GA particle swarm optimization, quantum particle swarm optimization and the standard particle swarm optimization to test with three objective functions. We compare evolutionary algorithm performance by a fixed number of iterations of the convergence speed and accuracy and the number of iterations under the fixed convergence precision, analyzing these types of hybrid particle swarm optimization results and practical performance. Test results show hybrid particle algorithm performance has improved significantly.

  3. Hybrid Decompression and Fixation Technique Versus Plated 3-Vertebra Corpectomy for 4-Segment Cervical Myelopathy: Analysis of 81 Cases With a Minimum 2-Year Follow-Up.

    Science.gov (United States)

    Odate, Seiichi; Shikata, Jitsuhiko; Kimura, Hiroaki; Soeda, Tsunemitsu

    2016-07-01

    A retrospective comparative study. The purpose of this study was to compare the stability and outcomes of a hybrid technique with those of a 3-vertebra corpectomy in the management of 4-segment cervical myelopathy. Patients with primarily ventral disease and loss of cervical lordosis are considered good candidates for anterior surgery. Cervical corpectomy is commonly performed in patients with multilevel cervical myelopathy. Corpectomies including >3 vertebraes entail an extremely high risk of reconstruction failure. To avoid the need to perform a 3-vertebra corpectomy, we use a hybrid decompression and fixation technique. This hybrid technique is a technique to obtain optimum decompression and fixation in patients with multilevel cervical myelopathy. A total of 81 patients with multilevel cervical myelopathy who underwent 4-segment cervical fixation with a minimum 2-year follow-up were included. The hybrid technique involved combining a plated 2-vertebra corpectomy and single-level discectomy with stand-alone cage fixation. This technique was performed in 39 patients, and the plated 3-vertebra corpectomy was performed in 42 patients. Nine patients (21%) who underwent the plated 3-vertebra corpectomy were treated with halo immobilization, but no patient in the hybrid group required this treatment (P=0.002). There were fewer instances of reconstruction failure in the hybrid group than in the 3-vertebra corpectomy group (0% vs. 10%, respectively; P=0.048) and fewer instances of C5 palsy (3% vs. 17%, respectively; P vertebra corpectomy for 4-segment cervical fixation: a shorter graft bone and plate are required; the fixed segment has greater initial stability; postoperative external immobilization is simplified; and the risk of reconstruction failure and postoperative C5 palsy is reduced markedly.

  4. A DG Implementation of a Novel Hybrid RANS/LES Technique With RANS Reconstruction

    CERN Document Server

    Abbà, Antonella; Nini, Michele; Restelli, Marco

    2014-01-01

    A new hybrid RANS/LES technique, based on the hybrid filter proposed by Germano in 2004, has been studied. The novelty herein introduced is represented by the reconstruction of the Reynolds stress tensor. As a consequence, no explicit RANS model is needed. The RANS and LES terms are merged using a constant blending factor. The model is implemented in a numerical code based on a high order Discontinuous Galerkin (DG) finite element formulation. The test case considered for numerical simulations is the turbulent tur- bulent channel flow at Mach = 0.2. The comparison with available DNS data shows a good agreement and, in general, an improvement with re- spect to pure LES results, confirming that the technique herein proposed represents a promising approach to the numerical simulation of turbulent flows.

  5. Comparative genomic hybridization analysis of benign and invasive male breast neoplasms

    DEFF Research Database (Denmark)

    Ojopi, Elida Paula Benquique; Cavalli, Luciane Regina; Cavalieri, Luciane Mara Bogline

    2002-01-01

    Comparative genomic hybridization (CGH) analysis was performed for the identification of chromosomal imbalances in two benign gynecomastias and one malignant breast carcinoma derived from patients with male breast disease and compared with cytogenetic analysis in two of the three cases. CGH analy...

  6. Detection of chromosome aberrations in interphase nuclei using fluorescence in situ hybridization technique.

    OpenAIRE

    1993-01-01

    We report here several experiences of interphase cytogenetics, using fluorescence in situ hybridization (FISH) technique, for the detection of chromosome aberrations. FISH, using alpha satellite specific probes of 18, X, Y chromosomes, was done in interphase nuclei from peripheral blood of patients with Edwards' syndrome, Klinefelter's syndrome and Turner's syndrome with healthy male and female controls, respectively. The distributions of fluorescent signals in 100 interphase nuclei were well...

  7. Comparing interpolation techniques for annual temperature mapping across Xinjiang region

    Science.gov (United States)

    Ren-ping, Zhang; Jing, Guo; Tian-gang, Liang; Qi-sheng, Feng; Aimaiti, Yusupujiang

    2016-11-01

    Interpolating climatic variables such as temperature is challenging due to the highly variable nature of meteorological processes and the difficulty in establishing a representative network of stations. In this paper, based on the monthly temperature data which obtained from the 154 official meteorological stations in the Xinjiang region and surrounding areas, we compared five spatial interpolation techniques: Inverse distance weighting (IDW), Ordinary kriging, Cokriging, thin-plate smoothing splines (ANUSPLIN) and Empirical Bayesian kriging(EBK). Error metrics were used to validate interpolations against independent data. Results indicated that, the ANUSPLIN performed best than the other four interpolation methods.

  8. Array-based comparative genomic hybridization is more informative than conventional karyotyping and fluorescence in situ hybridization in the analysis of first-trimester spontaneous abortion

    Directory of Open Access Journals (Sweden)

    Gao Jinsong

    2012-07-01

    Full Text Available Abstract Background Array-based comparative genomic hybridization (aCGH is a new technique for detecting submicroscopic deletions and duplications, and can overcome many of the limitations associated with classic cytogenetic analysis. However, its clinical use in spontaneous abortion needs comprehensive evaluation. We used aCGH to investigate chromosomal imbalances in 100 spontaneous abortions and compared the results with G-banding karyotyping and fluorescence in situ hybridization (FISH. Inconsistent results were verified by quantitative fluorescence PCR. Results Abnormalities were detected in 61 cases. aCGH achieved the highest detection rate (93.4%, 57/61 compared with traditional karyotyping (77%, 47/61 and FISH analysis (68.9%, 42/61. aCGH identified all chromosome abnormalities reported by traditional karyotyping and interphase FISH analysis, with the exception of four triploids. It also detected three additional aneuploidy cases in 37 specimens with ‘normal’ karyotypes, one mosaicism and 10 abnormalities in 14 specimens that failed to grow in vitro. Conclusions aCGH analysis circumvents many limitations in traditional karyotyping or FISH. The accuracy and efficiency of aCGH in spontaneous abortions highlights its clinical usefulness for the future. As aborted tissues have the potential to be contaminated with maternal cells, the threshold value of detection in aCGH should be lowered to avoid false negatives.

  9. A low-loss hybrid rectification technique for piezoelectric energy harvesting

    Science.gov (United States)

    Schlichting, A. D.; Fink, E.; Garcia, E.

    2013-09-01

    Embedded systems have decreased in size and increased in capability; however, small-scale energy storage technologies still significantly limit these advances. Energy neutral operation using small-scale energy harvesting technologies would allow for longer device operation times and smaller energy storage masses. Vibration energy harvesting is an attractive method due to the prevalence of energy sources in many environments. Losses in efficiency due to AC-DC rectification and conditioning circuits limit its application. This work presents a low-loss hybrid rectification technique for piezoelectric vibration energy harvesting using magnetically actuated reed switches and a passive semiconductor full-bridge rectifier. This method shows the capability to have higher efficiency levels and the rectification of low-voltage harvesters without the need for active electrical components. A theoretical model shows that the hybrid rectification technique performance is highly dependent on the proximity delay and the hysteresis behavior of the reed switches. Experimental results validate the model and support the hypothesis of increased performance using the hybrid rectification technique.

  10. A Comparison of Redundancy Techniques for Private and Hybrid Cloud Storage

    Directory of Open Access Journals (Sweden)

    E.M. Hernandez-Ramirez

    2012-11-01

    Full Text Available File redundancy techniques have been very useful mechanisms for offering fault tolerance and data availability in anykind of storage. Cloud storage is not the exception. This paper presents an evaluation of classical file redundancytechniques implemented in two cloud-storage deployment models, private and hybrid. A small prototype of a privateand hybrid cloud storage was implemented for this evaluation. The performance impact when file redundancy is onlyapplied in a private cloud versus when redundancy is also distributed in a public cloud (the hybrid model is analyzed.Additional to classical file redundancy techniques, an innovative method was evaluated for file redundancy based onan information dispersal algorithm (IDA. The usage of IDA represents a good option for managing sensitive data inhybrid cloud storage. In this technique, only parts of a file need to be sent to the public cloud, avoiding the completefile to be read from outside of the private zone. In this context, there is a trade-off between performance (forreconstructing the original file, it is first necessary to obtain all of its fragments and the security level that coulddetermine the viability of using IDA.

  11. Seed quality and water use characteristics of maize landraces compared with selected commercial hybrids

    Directory of Open Access Journals (Sweden)

    Farai Mazvimbakupa

    2015-03-01

    Full Text Available Understanding seed quality and water use characteristics of maize (Zea mays L. landraces will improve food security among subsistence farmers who still cultivate them. The objective of this study was to evaluate seed quality and water use characteristics of two maize landraces (GQ1 and GQ2 compared with two commercial hybrids (SC701 and PAN53. Seed quality was determined by the standard germination, electrical conductivity, and tetrazolium tests. A controlled environment study was conducted in which the landraces were compared with hybrids across three water treatments (30% ETc; 50% ETc, and 80% ETc. Although landrace GQ2 performed at par with the hybrids, overall, seed quality tests showed that hybrids had superior seed quality than landraces. This was also confirmed by highly significant emergence results (P < 0.001 from pot trials where SC701 and PAN53 had higher emergence (100% and 94.44%, respectively compared with GQ2 (86.11% and GQ1 (61.11%. Subjecting landraces and hybrids to water stress (50% and 30% ETc resulted in shorter plants with fewer leaves and earlier tasselling compared with non-stressed plants (80% ETc. Plant height for the 30% ETc water treatment was 156.1 cm compared with 175.8 cm for the 80% ETc water treatment, while plants under the 30% ETc water treatment tasseled at 105.4 d compared with 129.5 d for the 80% ETc water treatment. The GQ2 landrace continued to perform similar to, and often better, than the hybrid varieties, especially under stress conditions. Yield was poor under controlled conditions. Performance of the GQ2 landrace for both seed quality tests and under controlled conditions shows that landraces remain an important germplasm resource.

  12. Comparative Study of Various Techniques on Outlier Detection

    Directory of Open Access Journals (Sweden)

    K, Varma Mamta and Rajesh Nigam

    2011-08-01

    Full Text Available Diverse patterns from web data, commonly referred to as web outliers or exceptional cases or noise; exist in many real-world databases. Detection of such outliers is important for numerous applications, such as detecting criminal activities in E-commerce. Outliers are data objects with different characteristics compared to other data objects. Formal definition of outliers is given by D.Hawkins. as “An Outlier is an observation that deviates so much from other observations so that it arouses suspicion that it is generated by a different mechanism”. Detection of such outliers (outlier mining is important for numerous applications, such as detecting criminal activities in E-commerce, video surveillance, weather prediction, intrusion detection and pharmaceutical research. This paper has focus on comparative study of various techniques on Outlier Detection.

  13. Examination of Alternative Fabric Joining Techniques Compared to Traditional Sewing

    Directory of Open Access Journals (Sweden)

    Boles, Kerrie

    2012-10-01

    Full Text Available Ultrasonic seaming could soon replace the needle and thread technique with a safer, more efficient technology. In this designed experiment, the Chase FS-90 Ultrasonic Sewing Machine will be compared to the traditional sewing machine. The goal is to examine the sewing quality of textile fabric using ultrasonic methods by finding ideal parameters. The parameters are amplitude, speed, and pressure by using materials, including one thermoplastic fabric, one natural fabric, and low-melting polymer tape. The ultrasonic seam with the best properties will then be compared to the traditional needle and thread seam. The final product will be a designed dress using all ultrasonic seams. The material found to have the best seam properties will be used for the design.

  14. A comparative study of leachate quality and biogas generation in simulated anaerobic and hybrid bioreactors.

    Science.gov (United States)

    Xu, Qiyong; Tian, Ying; Wang, Shen; Ko, Jae Hac

    2015-07-01

    Research has been conducted to compare leachate characterization and biogas generation in simulated anaerobic and hybrid bioreactor landfills with typical Chinese municipal solid waste (MSW). Three laboratory-scale reactors, an anaerobic (A1) and two hybrid bioreactors (C1 and C2), were constructed and operated for about 10months. The hybrid bioreactors were operated in an aerobic-anaerobic mode with different aeration frequencies by providing air into the upper layer of waste. Results showed that the temporary aeration into the upper layer aided methane generation by shortening the initial acidogenic phase because of volatile fatty acids (VFAs) reduction and pH increase. Chemical oxygen demand (COD) decreased faster in the hybrid bioreactors, but the concentrations of ammonia-nitrogen in the hybrid bioreactors were greater than those in the anaerobic control. Methanogenic conditions were established within 75d and 60d in C1 and C2, respectively. However, high aeration frequency led to the consumption of organic matters by aerobic degradation and resulted in reducing accumulative methane volume. The temporary aeration enhanced waste settlement and the settlement increased with increasing the frequency of aeration. Methane production was inhibited in the anaerobic control; however, the total methane generations from hybrid bioreactors were 133.4L/kgvs and 113.2L/kgvs. As for MSW with high content of food waste, leachate recirculation right after aeration stopped was not recommended due to VFA inhibition for methanogens.

  15. Comparative study of novel endovascular treatment techniques for intracranial aneurysms

    Science.gov (United States)

    Cantón, Gádor; Lasheras, Juan C.; Levy, David I.; Sparks, Steven R.

    2002-11-01

    Intracranial aneurysms are life-threatening vascular lesions, which are potentially treatable to avoid the consequences of their rupture. Current treatments, either surgical or endovascular, are all guided to reduce the hemodynamic forces acting on the aneurysm wall in an effort to minimize the risk of rupture. Surgical clipping is still the most used technique to treat this type of aneurysm but there is a continued demand for less invasive approaches. This has led to the development of several endovascular techniques. We report here a comparative study of the reduction in the hemodynamic stresses and the modification of the flow in the parent vessel resulting from the use of three different techniques. The first one consists of endosaccular packing with platinum coils (GDC, Target Therapeutics), which is already widely used but its long-term efficacy has not yet been determined. The second one consists of the embolization of the aneurismal sac with Onyx, a polymer which hardens when in contact with the blood (being developed by Micro Therapeutics, Inc.). The third one involves the packing of the sac with hydrocoils, platinum wires coated with a gel which quickly hydrates when in contact with blood (developed by MicroVention). A Digital Particle Image Velocimetry (DPIV) system is used to measure in vitro the velocity field inside a model of an ACOM aneurysm (an aneurysm forming in the anterior communicating artery). Physiological accurate pulsatile flow conditions are input to the arterial model through a programmable pump. The measurements show that although all treatment techniques lead to a reduction in both normal and tangential shear stresses on the aneurismal sac, each one of them also leads to different modifications of the flow in the parent vessel which may have consequences related to potential for clotting. Comparison of the untreated aneurysm with the above three treated cases also showed that the characteristics of the wall shear stresses on the parent

  16. Comparative testing of nondestructive examination techniques for concrete structures

    Science.gov (United States)

    Clayton, Dwight A.; Smith, Cyrus M.

    2014-03-01

    A multitude of concrete-based structures are typically part of a light water reactor (LWR) plant to provide foundation, support, shielding, and containment functions. Concrete has been used in the construction of nuclear power plants (NPPs) because of three primary properties, its inexpensiveness, its structural strength, and its ability to shield radiation. Examples of concrete structures important to the safety of LWR plants include containment building, spent fuel pool, and cooling towers. Comparative testing of the various NDE concrete measurement techniques requires concrete samples with known material properties, voids, internal microstructure flaws, and reinforcement locations. These samples can be artificially created under laboratory conditions where the various properties can be controlled. Other than NPPs, there are not many applications where critical concrete structures are as thick and reinforced. Therefore, there are not many industries other than the nuclear power plant or power plant industry that are interested in performing NDE on thick and reinforced concrete structures. This leads to the lack of readily available samples of thick and heavily reinforced concrete for performing NDE evaluations, research, and training. The industry that typically performs the most NDE on concrete structures is the bridge and roadway industry. While bridge and roadway structures are thinner and less reinforced, they have a good base of NDE research to support their field NDE programs to detect, identify, and repair concrete failures. This paper will summarize the initial comparative testing of two concrete samples with an emphasis on how these techniques could perform on NPP concrete structures.

  17. A comparative study of leachate quality and biogas generation in simulated anaerobic and hybrid bioreactors

    Energy Technology Data Exchange (ETDEWEB)

    Xu, Qiyong; Tian, Ying; Wang, Shen; Ko, Jae Hac, E-mail: jaehacko@pkusz.edu.cn

    2015-07-15

    Highlights: • Temporary aeration shortened the initial acid inhibition phase for methanogens. • COD decreased faster in the hybrid bioreactor than that in the anaerobic control. • Methane generations from hybrid bioreactors were 133.4 L/kg{sub vs} and 113.2 L/kg{sub vs}. • MSW settlement increased with increasing the frequency of intermittent aeration. - Abstract: Research has been conducted to compare leachate characterization and biogas generation in simulated anaerobic and hybrid bioreactor landfills with typical Chinese municipal solid waste (MSW). Three laboratory-scale reactors, an anaerobic (A1) and two hybrid bioreactors (C1 and C2), were constructed and operated for about 10 months. The hybrid bioreactors were operated in an aerobic–anaerobic mode with different aeration frequencies by providing air into the upper layer of waste. Results showed that the temporary aeration into the upper layer aided methane generation by shortening the initial acidogenic phase because of volatile fatty acids (VFAs) reduction and pH increase. Chemical oxygen demand (COD) decreased faster in the hybrid bioreactors, but the concentrations of ammonia–nitrogen in the hybrid bioreactors were greater than those in the anaerobic control. Methanogenic conditions were established within 75 d and 60 d in C1 and C2, respectively. However, high aeration frequency led to the consumption of organic matters by aerobic degradation and resulted in reducing accumulative methane volume. The temporary aeration enhanced waste settlement and the settlement increased with increasing the frequency of aeration. Methane production was inhibited in the anaerobic control; however, the total methane generations from hybrid bioreactors were 133.4 L/kg{sub vs} and 113.2 L/kg{sub vs}. As for MSW with high content of food waste, leachate recirculation right after aeration stopped was not recommended due to VFA inhibition for methanogens.

  18. High capacity fiber optic sensor networks using hybrid multiplexing techniques and their applications

    Science.gov (United States)

    Sun, Qizhen; Li, Xiaolei; Zhang, Manliang; Liu, Qi; Liu, Hai; Liu, Deming

    2013-12-01

    Fiber optic sensor network is the development trend of fiber senor technologies and industries. In this paper, I will discuss recent research progress on high capacity fiber sensor networks with hybrid multiplexing techniques and their applications in the fields of security monitoring, environment monitoring, Smart eHome, etc. Firstly, I will present the architecture of hybrid multiplexing sensor passive optical network (HSPON), and the key technologies for integrated access and intelligent management of massive fiber sensor units. Two typical hybrid WDM/TDM fiber sensor networks for perimeter intrusion monitor and cultural relics security are introduced. Secondly, we propose the concept of "Microstructure-Optical X Domin Refecltor (M-OXDR)" for fiber sensor network expansion. By fabricating smart micro-structures with the ability of multidimensional encoded and low insertion loss along the fiber, the fiber sensor network of simple structure and huge capacity more than one thousand could be achieved. Assisted by the WDM/TDM and WDM/FDM decoding methods respectively, we built the verification systems for long-haul and real-time temperature sensing. Finally, I will show the high capacity and flexible fiber sensor network with IPv6 protocol based hybrid fiber/wireless access. By developing the fiber optic sensor with embedded IPv6 protocol conversion module and IPv6 router, huge amounts of fiber optic sensor nodes can be uniquely addressed. Meanwhile, various sensing information could be integrated and accessed to the Next Generation Internet.

  19. Stochastic segmentation models for array-based comparative genomic hybridization data analysis.

    Science.gov (United States)

    Lai, Tze Leung; Xing, Haipeng; Zhang, Nancy

    2008-04-01

    Array-based comparative genomic hybridization (array-CGH) is a high throughput, high resolution technique for studying the genetics of cancer. Analysis of array-CGH data typically involves estimation of the underlying chromosome copy numbers from the log fluorescence ratios and segmenting the chromosome into regions with the same copy number at each location. We propose for the analysis of array-CGH data, a new stochastic segmentation model and an associated estimation procedure that has attractive statistical and computational properties. An important benefit of this Bayesian segmentation model is that it yields explicit formulas for posterior means, which can be used to estimate the signal directly without performing segmentation. Other quantities relating to the posterior distribution that are useful for providing confidence assessments of any given segmentation can also be estimated by using our method. We propose an approximation method whose computation time is linear in sequence length which makes our method practically applicable to the new higher density arrays. Simulation studies and applications to real array-CGH data illustrate the advantages of the proposed approach.

  20. Chromosomal mapping of specific DNA gains and losses in solid tumors using comparative genomic hybridization

    Energy Technology Data Exchange (ETDEWEB)

    Schrock, E.; Manoir, S. du; Speicher, M. [National Center for Human Genome Research, Bethesda, MD (United States)] [and others

    1994-09-01

    Comparative genomic hybridization (CGH) is a new molecular cytogenetic technique that is based on two color FISH and quantitative digital imaging microscopy. CGH is used to comprehensively survey tumor genomes for copy number changes and to determine the map position of amplification sites on normal reference chromosomes. CGH was used to analyze 107 different solid tumors, including 16 low grade astrocytomas, 15 recurrent astrocytic tumors, 13 high grade astrocytomas, 13 small cell lung cancers (SCLC), 14 breast cancer samples (7 diploid and 7 aneupoid tumors), 18 chromophobe renal cell carcinomas and 5 seminomas. Tumor DNA was extracted from frozen tissue, autopic material and formalin fixed, paraffin-embedded tissue samples. Our results revealed tumor specific gains and losses of certain chromosomes or chromosomal subregions (e.g., chromosomes 7 and 10 in glioblastomas, chromosomes 3 and 5 in SCLC). Numerous DNA-amplifications were mapped on reference metaphase and prometaphase chromosomes. The frequent amplification of the EGFR gene (malignant gliomas), protooncogenes of the myc family (SCLC) and of c-myc, int-2 and c-erbB2 (breast cancer) was confirmed. Many additional amplification sites, however, were mapped that were not described before. The results of CGH analysis were independently confirmed by means of cytogenetic banding analysis, interphase cytogenetics with region specific DNA-clones, Southern-Blot analysis, DNA-cytometry and studies of loss of heterozygosity.

  1. SINGLE CELL DEGENERATE OLIGONUCLEOTIDE PRIMER-PCR AND COMPARATIVE GENOMIC HYBRIDIZATION WITH MODIFIED CONTROL REFERENCE

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    For investigating the possibility of applying degenerate oligonucleotide primer PCR (DOP-PCR) and comparative genomic hybridization (CGH) technique to analyses of genomic genetics in a single cell, the whole genomic DNA of a single cell with XX, XY, XO, XXY, +13 or +21 was amplified by DOP-PCR. Single cell DOP-PCR CGHs with conventional and modified control references, the genomic DNA and a single cell DOP-PCR product from normal male, were carried out respectively. The results showed that the average profile of the fluorescence intensity ratio in CGH with the genomic DNA as reference fluctuates much and that the standard deviation in about 30% haploid is beyond the normal limits. False positive hyper-representation was found to exist in X chromosome while trisomy 13 and 21 were not detected. However, the distributions of the mean and the standard deviation of the ratio in the CGH with DOP-PCR product as reference were quite acceptable. The copy number changes of chromosome X,Y,13 and 21 were revealed. Those results suggested that there is unrandom unequal amplification in a single cell DOP-PCR. Using a single DOP-PCR product as reference can decrease its influence on CGH. Single cell DOP-PCR-CGH and its application in the genetic analyses of preimplantation embryo or fetal cell in maternal blood may be possible.

  2. Role of hybrid forecasting techniques for transportation planning of broiler meat under uncertain demand in thailand

    Directory of Open Access Journals (Sweden)

    Thoranin Sujjaviriyasup

    2014-12-01

    Full Text Available One of numerous problems experiencing in supply chain management is the demand. Most demands are appeared in terms of uncertainty. The broiler meat industry is inevitably encountering the same problem. In this research, hybrid forecasting model of ARIMA and Support Vector Machine (SVMs are developed to forecast broiler meat export. In addition, ARIMA, SVMs, and Moving Average (MA are chosen for comparing the forecasting efficiency. All the forecasting models are tested and validated using the data of Brazil’s export, Canada’s export, and Thailand’s export. The hybrid model provides accuracy of the forecasted values that are 98.71%, 97.50%, and 93.01%, respectively. In addition, the hybrid model presents the least error of all MAE, RMSE, and MAPE comparing with other forecasting models. As forecasted data are applied to transportation planning, the mean absolute percentage error (MAPE of optimal value of forecasted value and actual value is 14.53%. The hybrid forecasting model shows an ability to reduce risk of total cost of transportation when broiler meat export is forecasted by using MA(2, MA(3, ARIMA, and SVM are 50.59%, 60.18%, 68.01%, and 46.55%, respectively. The results indicate that the developed forecasting model is recommended to broiler meat industries’ supply chain decision.

  3. Comparing modelling techniques for analysing urban pluvial flooding.

    Science.gov (United States)

    van Dijk, E; van der Meulen, J; Kluck, J; Straatman, J H M

    2014-01-01

    Short peak rainfall intensities cause sewer systems to overflow leading to flooding of streets and houses. Due to climate change and densification of urban areas, this is expected to occur more often in the future. Hence, next to their minor (i.e. sewer) system, municipalities have to analyse their major (i.e. surface) system in order to anticipate urban flooding during extreme rainfall. Urban flood modelling techniques are powerful tools in both public and internal communications and transparently support design processes. To provide more insight into the (im)possibilities of different urban flood modelling techniques, simulation results have been compared for an extreme rainfall event. The results show that, although modelling software is tending to evolve towards coupled one-dimensional (1D)-two-dimensional (2D) simulation models, surface flow models, using an accurate digital elevation model, prove to be an easy and fast alternative to identify vulnerable locations in hilly and flat areas. In areas at the transition between hilly and flat, however, coupled 1D-2D simulation models give better results since catchments of major and minor systems can differ strongly in these areas. During the decision making process, surface flow models can provide a first insight that can be complemented with complex simulation models for critical locations.

  4. Rapid high-throughput genotyping of HBV DNA using a modified hybridization-extension technique.

    Science.gov (United States)

    Bao, Han; Zhao, Wenliang; Ruan, Banjun; Wang, Qing; Zhao, Jinrong; Lei, Xiaoying; Wang, Weihua; Liu, Yonglan; Sun, Jianbing; Xiang, An; Guo, Yanhai; Yan, Zhen

    2013-11-07

    China has the highest incidence of hepatitis B virus (HBV) infection worldwide. HBV genotypes have variable impacts on disease pathogenesis and drug tolerance. We have developed a technically simple and accurate method for HBV genotyping that will be applicable to pre-treatment diagnosis and individualized treatment. Multiple sequence alignments of HBV genomes from GenBank were used to design primers and probes for genotyping of HBV A through H. The hybridization was carried out on nitrocellulose (NC) membranes with probes fixed in an array format, which was followed by hybrid amplification by an extension step with DNA polymerase to reinforce the double-stranded DNA hybrids on the NC membrane and subsequent visualization using an avidin-biotin system. Genotyping results were confirmed by DNA sequencing and bioinformatics analysis using the National Center for Biotechnology Information genotyping database, and compared with results from the line probe assay. The data show that multiple sequence alignment defined a 630 bp region in the HBV PreS and S regions that was suitable for genotyping. All genotyping significant single nucleotides in the region were defined. Two-hundred-and-ninety-one HBV-positive serum samples from Northwest Chinese patients were genotyped, and the genotyping rate from the new modified hybridization-extension method was 100% compared with direct sequencing. Compared with line probe assay, the newly developed method is superior, featuring reduced reaction time, lower risk of contamination, and increased accuracy for detecting single nucleotide mutation. In conclusion, a novel hybridization-extension method for HBV genotyping was established, which represents a new tool for accurate and rapid SNP detection that will benefit clinical testing.

  5. Recent Developments on Hybrid Time-Frequency Numerical Simulation Techniques for RF and Microwave Applications

    Directory of Open Access Journals (Sweden)

    Jorge F. Oliveira

    2013-01-01

    Full Text Available This paper reviews some of the promising doors that functional analysis techniques have recently opened in the field of electronic circuit simulation. Because of the modulated nature of radio frequency (RF signals, the corresponding electronic circuits seem to operate in a slow time scale for the aperiodic information and another, much faster, time scale for the periodic carrier. This apparent multirate behavior can be appropriately described using partial differential equations (PDEs within a bivariate framework, which can be solved in an efficient way using hybrid time-frequency techniques. With these techniques, the aperiodic information dimension is treated in the discrete time domain, while the periodic carrier dimension is processed in the frequency domain, in which the solution is evaluated within a space of harmonically related sinusoidal functions. The objective of this paper is thus to provide a general overview on the most important hybrid time-frequency techniques, as the ones found in commercial tools or the ones recently published in the literature.

  6. Supervised Lowess normalization of comparative genome hybridization data - application to lactococcal strain comparisons

    NARCIS (Netherlands)

    van Hijum, Sacha A. F. T.; Baerends, Richard J. S.; Zomer, Aldert L.; Karsens, Harma A.; Martin-Requena, Victoria; Trelles, Oswaldo; Kok, Jan; Kuipers, Oscar P.

    2008-01-01

    Background: Array-based comparative genome hybridization (aCGH) is commonly used to determine the genomic content of bacterial strains. Since prokaryotes in general have less conserved genome sequences than eukaryotes, sequence divergences between the genes in the genomes used for an aCGH experiment

  7. DNA copy number aberrations in breast cancer by array comparative genomic hybridization

    DEFF Research Database (Denmark)

    Li, J.; Wang, K.; Li, S.;

    2009-01-01

    Array comparative genomic hybridization (CGH) has been popularly used for analyzing DNA copy number variations in diseases like cancer. In this study, we investigated 82 sporadic samples from 49 breast cancer patients using 1-Mb resolution bacterial artificial chromosome CGH arrays. A number of h...

  8. Comparative genomic hybridization detects novel amplifications in fibroadenomas of the breast

    DEFF Research Database (Denmark)

    Ojopi, E P; Rogatto, S R; Caldeira, J R

    2001-01-01

    Comparative genomic hybridization analysis was performed for identification of chromosomal imbalances in 23 samples of fibroadenomas of the breast. Chromosomal gains rather than losses were a feature of these lesions. Only two cases with a familial and/or previous history of breast lesions had gain...

  9. Hybrid machine learning technique for forecasting Dhaka stock market timing decisions.

    Science.gov (United States)

    Banik, Shipra; Khodadad Khan, A F M; Anwer, Mohammad

    2014-01-01

    Forecasting stock market has been a difficult job for applied researchers owing to nature of facts which is very noisy and time varying. However, this hypothesis has been featured by several empirical experiential studies and a number of researchers have efficiently applied machine learning techniques to forecast stock market. This paper studied stock prediction for the use of investors. It is always true that investors typically obtain loss because of uncertain investment purposes and unsighted assets. This paper proposes a rough set model, a neural network model, and a hybrid neural network and rough set model to find optimal buy and sell of a share on Dhaka stock exchange. Investigational findings demonstrate that our proposed hybrid model has higher precision than the single rough set model and the neural network model. We believe this paper findings will help stock investors to decide about optimal buy and/or sell time on Dhaka stock exchange.

  10. Step Response Enhancement of Hybrid Stepper Motors Using Soft Computing Techniques

    Directory of Open Access Journals (Sweden)

    Amged S. El-Wakeel

    2014-05-01

    Full Text Available This paper presents the use of different soft computing techniques for step response enhancement of Hybrid Stepper Motors. The basic differential equations of hybrid stepper motor are used to build up a model using MATLAB software package. The implementation of Fuzzy Logic (FL and Proportional-Integral-Derivative (PID controllers are used to improve the motor performance. The numerical simulations by a PC-based controller show that the PID controller tuned by Genetic Algorithm (GA produces better performance than that tuned by Fuzzy controller. They show that, the Fuzzy PID-like controller produces better performance than the other linear Fuzzy controllers. Finally, the comparison between PID controllers tuned by genetic algorithm and the Fuzzy PID-like controller shows that, the Fuzzy PID-like controller produces better performance.

  11. Passive hybrid technique for the vibration mitigation of systems of interconnected stays

    Science.gov (United States)

    Caracoglia, Luca; Jones, Nicholas P.

    2007-11-01

    The problem of stay oscillation mitigation in cable-stayed bridges, usually induced by wind or wind and rain, may require the introduction of passive devices, such as dampers on individual stays or the use of transverse restrainers (cross-ties). The damper performance is often affected by the geometrical constraints of the bridge deck that limit the installation of such devices to locations very close to the end of the cable. On the other hand, cross-ties are generally incapable of direct energy dissipation. Therefore, the authors have proposed and analyzed a hybrid passive system in which the advantages of both techniques are applied to the oscillation mitigation of complex interconnected systems with multiple external dampers at the deck level, in correspondence with the cross-tie lines. This paper summarizes the relevant findings of a research program involving the authors' efforts focused on the in-plane free-vibration analysis of stay-cable systems. This research is also based upon some recent results associated with the analytical solution of a taut-cable with two attached viscous dampers. These findings are initially extended to a simplified network with reduced number of connectors and one damper, for which the derivation of analytical solution is still possible. Subsequently, an existing multistay multidamped arrangement on a real bridge is considered, in which a fully numerical approach is required. The modal behavior is compared to the simplified examples, also enabling the interpretation of the results in the context of more general guidelines for potential future application.

  12. Comparative genomics among Saccharomyces cerevisiae × Saccharomyces kudriavzevii natural hybrid strains isolated from wine and beer reveals different origins

    Science.gov (United States)

    2012-01-01

    Background Interspecific hybrids between S. cerevisiae × S. kudriavzevii have frequently been detected in wine and beer fermentations. Significant physiological differences among parental and hybrid strains under different stress conditions have been evidenced. In this study, we used comparative genome hybridization analysis to evaluate the genome composition of different S. cerevisiae × S. kudriavzevii natural hybrids isolated from wine and beer fermentations to infer their evolutionary origins and to figure out the potential role of common S. kudriavzevii gene fraction present in these hybrids. Results Comparative genomic hybridization (CGH) and ploidy analyses carried out in this study confirmed the presence of individual and differential chromosomal composition patterns for most S. cerevisiae × S. kudriavzevii hybrids from beer and wine. All hybrids share a common set of depleted S. cerevisiae genes, which also are depleted or absent in the wine strains studied so far, and the presence a common set of S. kudriavzevii genes, which may be associated with their capability to grow at low temperatures. Finally, a maximum parsimony analysis of chromosomal rearrangement events, occurred in the hybrid genomes, indicated the presence of two main groups of wine hybrids and different divergent lineages of brewing strains. Conclusion Our data suggest that wine and beer S. cerevisiae × S. kudriavzevii hybrids have been originated by different rare-mating events involving a diploid wine S. cerevisiae and a haploid or diploid European S. kudriavzevii strains. Hybrids maintain several S. kudriavzevii genes involved in cold adaptation as well as those related to S. kudriavzevii mitochondrial functions. PMID:22906207

  13. 微阵列比较基因组杂交技术在自然流产遗传学分析中的应用%Application of array-based comparative genomic hybridization technique in genetic analysis of ;patients with spontaneous abortion

    Institute of Scientific and Technical Information of China (English)

    楚艳; 吴东; 侯巧芳; 霍晓东; 高越; 王涛; 王红丹; 杨艳丽; 廖世秀

    2016-01-01

    目的:探讨微阵列比较基因组杂交(array-CGH)技术在自然流产组织染色体分析中的应用,为自然流产的遗传咨询和临床诊治提供指导。方法选取2013年11月至2016年1月在河南省人民医院就诊的自然流产患者382例,收集流产绒毛或胎儿组织,采用array-CGH技术对流产绒毛或胎儿组织的全基因组拷贝数进行检测,并同时行细胞培养和传统G显带染色体核型分析,比较G显带染色体核型分析及array-CGH的结果。结果 array-CGH技术成功获得结果382例,检测成功率为100.0%(382/382),染色体异常检出率为46.6%(178/382);染色体核型分析技术成功获得结果281例,检测成功率为73.6%(281/382),染色体异常检出率为40.2%(113/281);array-CGH均高于染色体核型分析技术。array-CGH检测出的178例染色体异常中,染色体数目异常163例(91.6%,163/178);染色体结构异常15例(8.4%,15/178),其中10例同时出现了染色体微重复和微缺失的流产胚胎中有4例被证实父母一方为染色体平衡易位携带者。染色体核型分析检出的113例染色体异常中,染色体数目异常108例(95.6%,108/113),染色体结构异常5例(4.4%,5/113)。两种方法的结果不一致有3例,其中2例为三倍体、1例为性染色体低比例嵌合,array-CGH均漏检为正常。结论 array-CGH技术用于自然流产胚胎组织的染色体分析成功率高,对标本的取材要求远低于传统染色体核型分析技术,且分辨率高、准确快速,可以作为流产组织遗传学诊断的一线技术。%Objective To investigate the value of array-based comparative genomic hybridization (array-CGH) technique for the detection of chromosomal analysis of miscarried embryo, and to provide genetic counseling for couples with spontaneous abortion. Methods Totally 382 patients who underwent miscarriage were enrolled in this study. All

  14. Bonding to silicate ceramics: Conventional technique compared with a simplified technique

    Science.gov (United States)

    Perez-Barquero, Jorge-Alonso; Gonzalez-Angulo, Eva; Fons-Font, Antonio; Bustos-Salvador, Jose-Luis

    2017-01-01

    Background Silicate ceramic bonding is carried out by acid-etching with hydrofluoric acid (HF) followed by an application of silane. By replacing HF with ammonium polyfluoride, contained in the same flask as the silane, the number of steps in this clinical procedure, can be reduced, while maintaining bond strength values, and reducing toxicity. A shear bond test was performed to compare the conventional and the simplified surface treatment techniques. Material and Methods Twenty ceramic samples were fabricated from IPS emax CAD® ceramic (Ivoclar Vivadent) and divided into two groups (G1 and G2) (n=10). The conventional technique was applied to G1 samples, and the simplified technique to G2 samples. A resin cement cylinder was bonded to each sample. Afterwards, samples underwent shear bond strength testing in a universal test machine. Results G1 obtained 26.53±6.33 MPa and G2 23.52±8.41 MPa, without statistically significant differences between the two groups. Conclusions Monobond Etch&Prime appears to obtain equivalent results in terms of bond strength while simplifying the technique. Further investigation is required to corroborate these preliminary findings. Key words:Shear bond strength, surface treatment, bonding to ceramic, hydrofluoric acid, ammonium polyfluoride. PMID:28298979

  15. Hybrid PIV-PTV technique for measuring blood flow in rat mesenteric vessels.

    Science.gov (United States)

    Ha, Hojin; Nam, Kweon-Ho; Lee, Sang Joon

    2012-11-01

    The micro-particle tracking velocimetry (μ-PTV) technique is used to obtain the velocity fields of blood flow in the microvasculature under in vivo conditions because it can provide the blood velocity distribution in microvessels with high spatial resolution. The in vivo μ-PTV technique usually requires a few to tens of seconds to obtain a whole velocity profile across the vessel diameter because of the limited number density of tracer particles under in vivo conditions. Thus, the μ-PTV technique alone is limited in measuring unsteady blood flows that fluctuate irregularly due to the heart beating and muscle movement in surrounding tissues. In this study, a new hybrid PIV-PTV technique was established by combining PTV and particle image velocimetry (PIV) techniques to resolve the drawbacks of the μ-PTV method in measuring blood flow in microvessels under in vivo conditions. Images of red blood cells (RBCs) and fluorescent particles in rat mesenteric vessels were obtained simultaneously. Temporal variations of the centerline blood velocity were monitored using a fast Fourier transform-based cross-correlation PIV method. The fluorescence particle images were analyzed using the μ-PTV technique to extract the spatial distribution of the velocity vectors. Data from the μ-PTV and PIV methods were combined to obtain a better estimate of the velocity profile in actual blood flow. This technique will be useful in investigating hemodynamics in microcirculation by measuring unsteady irregular blood flows more accurately.

  16. A Low Cost Vision Based Hybrid Fiducial Mark Tracking Technique for Mobile Industrial Robots

    Directory of Open Access Journals (Sweden)

    Mohammed Y Aalsalem

    2012-07-01

    Full Text Available The field of robotic vision is developing rapidly. Robots can react intelligently and provide assistance to user activities through sentient computing. Since industrial applications pose complex requirements that cannot be handled by humans, an efficient low cost and robust technique is required for the tracking of mobile industrial robots. The existing sensor based techniques for mobile robot tracking are expensive and complex to deploy, configure and maintain. Also some of them demand dedicated and often expensive hardware. This paper presents a low cost vision based technique called “Hybrid Fiducial Mark Tracking” (HFMT technique for tracking mobile industrial robot. HFMT technique requires off-the-shelf hardware (CCD cameras and printable 2-D circular marks used as fiducials for tracking a mobile industrial robot on a pre-defined path. This proposed technique allows the robot to track on a predefined path by using fiducials for the detection of Right and Left turns on the path and White Strip for tracking the path. The HFMT technique is implemented and tested on an indoor mobile robot at our laboratory. Experimental results from robot navigating in real environments have confirmed that our approach is simple and robust and can be adopted in any hostile industrial environment where humans are unable to work.

  17. A hybrid method for flood simulation in small catchments combining hydrodynamic and hydrological techniques

    Science.gov (United States)

    Bellos, Vasilis; Tsakiris, George

    2016-09-01

    The study presents a new hybrid method for the simulation of flood events in small catchments. It combines a physically-based two-dimensional hydrodynamic model and the hydrological unit hydrograph theory. Unit hydrographs are derived using the FLOW-R2D model which is based on the full form of two-dimensional Shallow Water Equations, solved by a modified McCormack numerical scheme. The method is tested at a small catchment in a suburb of Athens-Greece for a storm event which occurred in February 2013. The catchment is divided into three friction zones and unit hydrographs of 15 and 30 min are produced. The infiltration process is simulated by the empirical Kostiakov equation and the Green-Ampt model. The results from the implementation of the proposed hybrid method are compared with recorded data at the hydrometric station at the outlet of the catchment and the results derived from the fully hydrodynamic model FLOW-R2D. It is concluded that for the case studied, the proposed hybrid method produces results close to those of the fully hydrodynamic simulation at substantially shorter computational time. This finding, if further verified in a variety of case studies, can be useful in devising effective hybrid tools for the two-dimensional flood simulations, which are lead to accurate and considerably faster results than those achieved by the fully hydrodynamic simulations.

  18. Establishment of a Multi-color Genomic in situ Hybridization Technique to Simultaneously Discriminate the Three Interspecific Hybrid Genomes in Gossypium

    Institute of Scientific and Technical Information of China (English)

    Bing Guan; Kai Wang; Bao-Liang Zhou; Wang-Zhen Guo; Tian-Zhen Zhang

    2008-01-01

    To identify alien chromosomes in recipient progenies and to analyze genome components in polyploidy, a genomic In situ hybridization (GISH) technique that is suitable for cotton was developed using increased stringency conditions. The increased stringency conditions were a combination of the four factors in the following optimized state: 100:1 ratio of blocking DNA to probe, 60% formamide wash solution, 43 =C temperature wash and a 13 min wash. Under these specific conditions using gDNA from Gossypium sturtianurn (C1C1) as a probe, strong hybridization signals were only observed on chromosomes from the C1 genome in somatic cells of the hybrid F1 (G. hirsutum×G. sturtianum) (AtDtC1). Therefore, GISH was able to discriminate parental chromosomes in the hybrid. Further, we developed a multi-color GISH to simultaneously discriminate the three genomes of the above hybrid. The results repeatedly displayed the three genomes, At, Dt, and C1, and each set of chromosomes with a unique color, making them easy to identify. The power of the multi-color GISH was proven by analysis of the hexaploid hybrid F1 (G. hirsutum × G. australe) (AtAtDtDtG2G2). We believe that the powerful multi-color GISH technique could be applied extensively to analyze the genome component in polyploidy and to identify alien chromosomes in the recipient progenies.

  19. Direct detection of expanded trinucleotide repeats using PCR and DNA hybridization techniques

    Energy Technology Data Exchange (ETDEWEB)

    Petronis, A.; Tatuch, Y.; Klempan, T.A.; Kennedy, J.L. [Hospital for Sick Children, Toronto (Canada)] [and others

    1996-02-16

    Recently, unstable trinucleotide repeats have been shown to be the etiologic factor in seven neuropsychiatric diseases, and they may play a similar role in other genetic disorders which exhibit genetic anticipation. We have tested one polymerase chain reaction (PCR)-based and two hybridization-based methods for direct detection of unstable DNA expansion in genomic DNA. This technique employs a single primer (asymmetric) PCR using total genomic DNA as a template to efficiently screen for the presence of large trinucleotide repeat expansions. High-stringency Southern blot hybridization with a PCR-generated trinucleotide repeat probe allowed detection of the DNA fragment containing the expansion. Analysis of myotonic dystrophy patients containing different degrees of (CTG){sub n} expansion demonstrated the identification of the site of trinucleotide instability in some affected individuals without any prior information regarding genetic map location. The same probe was used for fluorescent in situ hybridization and several regions of (CTG){sub n}/(CAG){sub n} repeats in the human genome were detected, including the myotonic dystrophy locus on chromosome 19q. Although limited at present to large trinucleotide repeat expansions, these strategies can be applied to directly clone genes involved in disorders caused by large expansions of unstable DNA. 33 refs., 4 figs.

  20. Biocompatibility improvement of titanium implants by coating with hybrid materials synthesized by sol-gel technique.

    Science.gov (United States)

    Catauro, M; Bollino, F; Papale, F

    2014-12-01

    Organic-inorganic hybrid materials based on zirconia and polyethylene glycol (PEG) have been synthesized via sol-gel method in the present study. Those materials, still in the sol phase, have been used to coat a titanium grade 4 (Ti-4) substrate to improve its biological properties. Dip-coating technique has been used to obtain thin films. PEG, a biocompatible polymer, used as the organic phase, has been incorporated with different percentages in an inorganic zirconium-based matrix. Those hybrids have been characterized by Fourier transform infrared spectroscopy (FTIR) to detect interactions between the two phases. The films have been examined using SEM to detect morphological changes with PEG percentages. The potential applications of the hybrid coatings in biomedical field have been evaluated by bioactivity and cytotoxicity tests. The coated titanium was immersed in simulated body fluid (SBF) for 21 days and the hydroxyapatite deposition on its surface was subsequently evaluated, as that feature can be used as an index of bone-bonding capability. SEM equipped with energy dispersive spectrometer (EDS) was used to examine hydroxyapatite formation. NIH 3T3 mouse embryonic fibroblast cells were seeded on specimens to evaluate cells-materials interactions and cell vitality was inspected using WST-8 Assay.

  1. Production of CaCO3/hyperbranched polyglycidol hybrid films using spray-coating technique.

    Science.gov (United States)

    Malinova, Kalina; Gunesch, Manfred; Montero Pancera, Sabrina; Wengeler, Robert; Rieger, Bernhard; Volkmer, Dirk

    2012-05-15

    Biomineralizing organisms employ macromolecules and cellular processing strategies in order to produce highly complex composite materials such as nacre. Bionic approaches translating this knowledge into viable technical production schemes for a large-scale production of biomimetic hybrid materials have met with limited success so far. Investigations presented here thus focus on the production of CaCO(3)/polymer hybrid coatings that can be applied to huge surface areas via reactive spray-coating. Technical requirements for simplicity and cost efficiency include a straightforward one-pot synthesis of low molecular weight hyperbranched polyglycidols (polyethers of 2,3-epoxy-1-propanol) as a simple mimic of biological macromolecules. Polymers functionalized with phosphate monoester, sulfate or carboxylate groups provide a means of controlling CaCO(3) particle density and morphology in the final coatings. We employ reactive spray-coating techniques to generate CaCO(3)/hybrid coatings among which vaterite composites can be prepared in the presence of sulfate-containing hyperbranched polyglycidol. These coatings show high stability and remained unchanged for periods longer than 9 months. By employing carboxylate-based hyperbranched polyglycidol, it is possible to deposit vaterite-calcite composites, whereas phosphate-ester-based hyperbranched polyglycidol leads to calcite composites. Nanoindentation was used to study mechanical properties, showing that coatings thus obtained are slightly harder than pure calcite. Copyright © 2012 Elsevier Inc. All rights reserved.

  2. Comparative analysis of inbred and hybrid maize at the diploid and tetraploid levels.

    Science.gov (United States)

    Riddle, Nicole C; Birchler, James A

    2008-02-01

    Heterosis often occurs in offspring derived from a cross between inbred or divergent parents and can be observed as the superior performance of these hybrids for a wide variety of characters. Heterosis was compared in maize lines at two ploidy levels, diploid and tetraploid, to gain a better understanding of the interaction of heterosis and ploidy level. Employing genetically identical diploid and tetraploid maize derived from four different inbred lines, we investigated heterosis for 11 morphological traits, including several plant height measures, as well as flowering time for both silks and anthers. We find that the heterotic response of a certain hybrid differs between diploid and tetraploid lines, and that the response at one ploidy cannot serve as a predictor for the other. Also, progressive heterosis was found for several of the characters in the tetraploid double-cross hybrid, which can have four different alleles at one locus, compared to the double-cross diploid hybrids, which can only possess two alleles per locus. Overall, the results indicate that the heterotic response of tetraploid maize lines differs significantly from that of the diploid.

  3. Comparative genetics of hybrid incompatibility: sterility in two Solanum species crosses.

    Science.gov (United States)

    Moyle, Leonie C; Nakazato, Takuya

    2008-07-01

    The genetic basis of hybrid sterility can provide insight into the genetic and evolutionary origins of species barriers. We examine the genetics of hybrid incompatibility between two diploid plant species in the plant clade Solanum sect. Lycopersicon. Using a set of near-isogenic lines (NILs) representing the wild species Solanum pennellii (formerly Lycopersicon pennellii) in the genetic background of the cultivated tomato S. lycopersicum (formerly L. esculentum), we found that hybrid pollen and seed infertility are each based on a modest number of loci, male (pollen) and other (seed) incompatibility factors are roughly comparable in number, and seed-infertility QTL act additively or recessively. These findings are remarkably consistent with our previous analysis in a different species pair, S. lycopersicum x S. habrochaites. Data from both studies contrast strongly with data from Drosophila. Finally, QTL for pollen and seed sterility from the two Solanum studies were chromosomally colocalized, indicating a shared evolutionary history for these QTL, a nonrandom genomic distribution of loci causing sterility, and/or a proclivity of certain genes to be involved in hybrid sterility. We show that comparative mapping data can delimit the probable timing of evolution of detected QTL and discern which sterility loci likely evolved earliest among species.

  4. Comparing dynamical systems concepts and techniques for biomechanical analysis

    Institute of Scientific and Technical Information of China (English)

    Richard E.A. van Emmerik; Scott W. Ducharme; Avelino C. Amado; Joseph Hamill

    2016-01-01

    Traditional biomechanical analyses of human movement are generally derived from linear mathematics. While these methods can be useful in many situations, they do not describe behaviors in human systems that are predominately nonlinear. For this reason, nonlinear analysis methods based on a dynamical systems approach have become more prevalent in recent literature. These analysis techniques have provided new insights into how systems (1) maintain pattern stability, (2) transition into new states, and (3) are governed by short-and long-term (fractal) correlational processes at different spatio-temporal scales. These different aspects of system dynamics are typically investigated using concepts related to variability, stability, complexity, and adaptability. The purpose of this paper is to compare and contrast these different concepts and demonstrate that, although related, these terms represent fundamentally different aspects of system dynamics. In particular, we argue that variability should not uniformly be equated with stability or complexity of movement. In addition, current dynamic stability measures based on nonlinear analysis methods (such as the finite maximal Lyapunov exponent) can reveal local instabilities in movement dynamics, but the degree to which these local instabilities relate to global postural and gait stability and the ability to resist external perturbations remains to be explored. Finally, systematic studies are needed to relate observed reductions in complexity with aging and disease to the adaptive capabilities of the movement system and how complexity changes as a function of different task constraints.

  5. Comparative evaluation of aerospace composites using thermography and ultrasonic NDT techniques

    Science.gov (United States)

    Theodorakeas, P.; Avdelidis, N. P.; Hatziioannidis, I.; Cheilakou, E.; Marini, R.; Koui, M.

    2015-05-01

    In the present research work a study was carried out evaluating the applicability of two NDT techniques, this of Transient Thermography (TT) and Ultrasonic Testing (UT) for the inspection of different types of composite materials (i.e. laminated CFRPs, laminated hybrid FRPs and sandwiched panels). The composite structures were consisted of a variety of artificial defects, while inspection was performed through different testing configurations. In particular, transient thermography was implemented through the monitoring of the surface transient cooling after flash heating the samples and ultrasonic testing was applied using both a conventional single element probe (immersion technique) and a linear phased array transducer consisted of 128 elements. The main objective of this work was to compare the applicability and effectiveness of the two techniques in aerospace composites inspection as well as to evaluate the accuracy produced regarding the quantitative characterisation of the detected features. The obtained results showed that all the defects were revealed by either transient thermography or ultrasonic testing, whilst thermographic inspection can display the acquired results in a more rapid manner. On the other hand UT testing can provide efficient results for deeper probing requiring however longer inspection times. In other words, the acquired data and the respective analyses highlighted the different capability of each testing configuration, to detect defects and to gain knowledge for the interior of the structures.

  6. A Comparative Study of Inspection Techniques for Array Packages

    Science.gov (United States)

    Mohammed, Jelila; Green, Christopher

    2008-01-01

    This viewgraph presentation reviews the inspection techniques for Column Grid Array (CGA) packages. The CGA is a method of chip scale packaging using high temperature solder columns to attach part to board. It is becoming more popular over other techniques (i.e. quad flat pack (QFP) or ball grid array (BGA)). However there are environmental stresses and workmanship challenges that require good inspection techniques for these packages.

  7. A critical assessment of cross-species detection of gene duplicates using comparative genomic hybridization

    Directory of Open Access Journals (Sweden)

    Renn Suzy CP

    2010-05-01

    Full Text Available Abstract Background Comparison of genomic DNA among closely related strains or species is a powerful approach for identifying variation in evolutionary processes. One potent source of genomic variation is gene duplication, which is prevalent among individuals and species. Array comparative genomic hybridization (aCGH has been successfully utilized to detect this variation among lineages. Here, beyond the demonstration that gene duplicates among species can be quantified with aCGH, we consider the effect of sequence divergence on the ability to detect gene duplicates. Results Using the X chromosome genomic content difference between male D. melanogaster and female D. yakuba and D. simulans, we describe a decrease in the ability to accurately measure genomic content (copy number for orthologs that are only 90% identical. We demonstrate that genome characteristics (e.g. chromatin environment and non-orthologous sequence similarity can also affect the ability to accurately measure genomic content. We describe a normalization strategy and statistical criteria to be used for the identification of gene duplicates among any species group for which an array platform is available from a closely related species. Conclusions Array CGH can be used to effectively identify gene duplication and genome content; however, certain biases are present due to sequence divergence and other genome characteristics resulting from the divergence between lineages. Highly conserved gene duplicates will be more readily recovered by aCGH. Duplicates that have been retained for a selective advantage due to directional selection acting on many loci in one or both gene copies are likely to be under-represented. The results of this study should inform the interpretation of both previously published and future work that employs this powerful technique.

  8. Apical transportation of manual NiTi instruments and a hybrid technique in severely curved simulated canals

    OpenAIRE

    Aurenaila Nascimento Gonçalves; Matheus Franco da Frota; Emilio Carlos Sponchiado Júnior; Fredson Marcio Acris de Carvalho; Lucas da Fonseca Roberti Garcia; André Augusto Franco Marques

    2015-01-01

    Aim: To evaluate the apical transportation induced by two instrumentation techniques in severely curved simulated canals. Materials and Methods: Forty simulated canals were divided into two groups (n = 20), according to the following instrumentation techniques: ProTaper Universal Manual System and a hybrid technique. The simulated canals in the ProTaper group were prepared following the technique recommended by the manufacturer: SX files in the cervical third of the root canal and S1, S2,...

  9. REVIEW OF HEART DISEASE PREDICTION SYSTEM USING DATA MINING AND HYBRID INTELLIGENT TECHNIQUES

    Directory of Open Access Journals (Sweden)

    R. Chitra

    2013-07-01

    Full Text Available The Healthcare industry generally clinical diagnosis is done mostly by doctor’s expertise and experience. Computer Aided Decision Support System plays a major role in medical field. With the growing research on heart disease predicting system, it has become important to categories the research outcomes and provides readers with an overview of the existing heart disease prediction techniques in each category. Neural Networks are one of many data mining analytical tools that can be utilized to make predictions for medical data. From the study it is observed that Hybrid Intelligent Algorithm improves the accuracy of the heart disease prediction system. The commonly used techniques for Heart Disease Prediction and their complexities are summarized in this paper.

  10. Local tetrahedron modeling of microelectronics using the finite-volume hybrid-grid technique

    Energy Technology Data Exchange (ETDEWEB)

    Riley, D.J.; Turner, C.D.

    1995-12-01

    The finite-volume hybrid-grid (FVHG) technique uses both structured and unstructured grid regions in obtaining a solution to the time-domain Maxwell`s equations. The method is based on explicit time differencing and utilizes rectilinear finite-difference time-domain (FDTD) and nonorthogonal finite-volume time-domain (FVTD). The technique directly couples structured FDTD grids with unstructured FVTD grids without the need for spatial interpolation across grid interfaces. In this paper, the FVHG method is applied to simple planar microelectronic devices. Local tetrahedron grids are used to model portions of the device under study, with the remainder of the problem space being modeled with cubical hexahedral cells. The accuracy of propagating microstrip-guided waves from a low-density hexahedron region through a high-density tetrahedron grid is investigated.

  11. Enhancement of Twins Fetal ECG Signal Extraction Based on Hybrid Blind Extraction Techniques

    Directory of Open Access Journals (Sweden)

    Ahmed Kareem Abdullah

    2017-07-01

    Full Text Available ECG machines are noninvasive system used to measure the heartbeat signal. It’s very important to monitor the fetus ECG signals during pregnancy to check the heat activity and to detect any problem early before born, therefore the monitoring of ECG signals have clinical significance and importance. For multi-fetal pregnancy case the classical filtering algorithms are not sufficient to separate the ECG signals between mother and fetal. In this paper the mixture consists of mixing from three ECG signals, the first signal is the mother ECG (M-ECG signal, second signal the Fetal-1 ECG (F1-ECG, and third signal is the Fetal-2 ECG (F2-ECG, these signals are extracted based on modified blind source extraction (BSE techniques. The proposed work based on hybridization between two BSE techniques to ensure that the extracted signals separated well. The results demonstrate that the proposed work very efficiently to extract the useful ECG signals

  12. Estimation of radon concentrations in coal mines using a hybrid technique calibration curve.

    Science.gov (United States)

    Jamil, K; Ali, S

    2001-01-01

    The results of epidemiological studies in various countries show that radon and its progeny cause carcinogenic effects on mine workers. Therefore, it becomes of paramount importance to monitor radon concentrations and consequently determine the radon dose rates in coal mines for the protection of coal miners. A new calibration curve was obtained for radon concentration estimation using hybrid techniques. A calibration curve was generated using 226Ra activity concentration measured by a HPGe detector-based gamma-ray spectrometer versus alpha-track-density rate due to radon and its progeny on CR-39 track detector. Using the slope of the experimentally determined curve in the units of Becqueral per kilogram (Bq kg-1) per unit alpha-track-density per hour (cm-2 h-1), radon concentrations (Bq m-3) were estimated using coal samples from various coal mines in two provinces of Pakistan, Punjab and Balochistan. Consequently, radon dose rates were computed in the simulated environment of the coal mines. Results of these computations may be considered with a caveat that the method developed in this paper provides only a screening method to indicate the radon dose in coal mines. It has been shown that the actual measurements of radon concentrations in the coal mines are in agreement with the estimated radon concentrations using the hybrid-technique calibration curve.

  13. Novel Hybrid Scheduling Technique for Sensor Nodes with Mixed Criticality Tasks

    Directory of Open Access Journals (Sweden)

    Mihai-Victor Micea

    2017-06-01

    Full Text Available Sensor networks become increasingly a key technology for complex control applications. Their potential use in safety- and time-critical domains has raised the need for task scheduling mechanisms specially adapted to sensor node specific requirements, often materialized in predictable jitter-less execution of tasks characterized by different criticality levels. This paper offers an efficient scheduling solution, named Hybrid Hard Real-Time Scheduling (H2RTS, which combines a static, clock driven method with a dynamic, event driven scheduling technique, in order to provide high execution predictability, while keeping a high node Central Processing Unit (CPU utilization factor. From the detailed, integrated schedulability analysis of the H2RTS, a set of sufficiency tests are introduced and demonstrated based on the processor demand and linear upper bound metrics. The performance and correct behavior of the proposed hybrid scheduling technique have been extensively evaluated and validated both on a simulator and on a sensor mote equipped with ARM7 microcontroller.

  14. The application of fluorescence in situ hybridization (FISH technique for studying the microbial communities in intestinal tissues of white shrimp (Penaeus vannamei

    Directory of Open Access Journals (Sweden)

    Supamattaya, K.

    2005-02-01

    Full Text Available Fluorescence in situ hybridization technique is very useful for the evaluation of microbial communities in various environments. It is possible to apply this technique to study the intestinal microflora in white shrimp (Penaeus vannamei. Different fixatives and storage temperature were tested in this technique. It was found that fixation with 10% buffered formalin for 12 hours and changed to 70% ethanol shown positive results when compared to the fixation with Davidson's fixative or RF fixative. The best signaling was obtainedfrom the samples which were stored in -20ºC. By using the DNA probe targeted to the Eubacteria domain (EUB338 probe, 5′-GCT GCC TCC CGT AGG AGT-3′ labeled with fluorescein as a hybridizing probe, it was found that most intestinal microflora were aggregated with the intestinal contents, or dispersed in the lumen. There was not evidence of the attachment of the microflora with the intestinal epithelium in this study.

  15. Skill Assessment of An Hybrid Technique To Estimate Quantitative Precipitation Forecast For Galicia (nw Spain)

    Science.gov (United States)

    Lage, A.; Taboada, J. J.

    Precipitation is the most obvious of the weather elements in its effects on normal life. Numerical weather prediction (NWP) is generally used to produce quantitative precip- itation forecast (QPF) beyond the 1-3 h time frame. These models often fail to predict small-scale variations of rain because of spin-up problems and their coarse spatial and temporal resolution (Antolik, 2000). Moreover, there are some uncertainties about the behaviour of the NWP models in extreme situations (de Bruijn and Brandsma, 2000). Hybrid techniques, combining the benefits of NWP and statistical approaches in a flexible way, are very useful to achieve a good QPF. In this work, a new technique of QPF for Galicia (NW of Spain) is presented. This region has a percentage of rainy days per year greater than 50% with quantities that may cause floods, with human and economical damages. The technique is composed of a NWP model (ARPS) and a statistical downscaling process based on an automated classification scheme of at- mospheric circulation patterns for the Iberian Peninsula (J. Ribalaygua and R. Boren, 1995). Results show that QPF for Galicia is improved using this hybrid technique. [1] Antolik, M.S. 2000 "An Overview of the National Weather Service's centralized statistical quantitative precipitation forecasts". Journal of Hydrology, 239, pp:306- 337. [2] de Bruijn, E.I.F and T. Brandsma "Rainfall prediction for a flooding event in Ireland caused by the remnants of Hurricane Charley". Journal of Hydrology, 239, pp:148-161. [3] Ribalaygua, J. and Boren R. "Clasificación de patrones espaciales de precipitación diaria sobre la España Peninsular". Informes N 3 y 4 del Servicio de Análisis e Investigación del Clima. Instituto Nacional de Meteorología. Madrid. 53 pp.

  16. Comparative Proteomic Analyses of the Hybrid Yellow-Poplar Stigma upon Pollination

    Institute of Scientific and Technical Information of China (English)

    Ming Li; Kun Wang; Pingfang Yang

    2012-01-01

    As basal angiosperm,Liriodendron chinense (Hemsl.) Sarg.and Liriodendron tulipifera Linn.are two species belong to Liriodendron genus.Hybrid yellowpoplar was obtained through crossing between Liriodendron tulipifera Linn.x L.chinense(Hemsl.) Sarg.Although hybrid yellow-poplar was strong in both growth and adaptation,its fruiting rate was as low as its parents.In this study,we profiled the proteome in hybrid yellow-poplar stigma before and after pollination.Comparative analyses of two dimensional gel electrophoresis maps from un-pollinated and pollinated stigmas showed that 30 proteins were increased and 27 proteins decreased after pollination.Functional categorization showed that most of them were metabolism-related,stress response related and protein biosynthesis,degradation and destinationrelated proteins.Also there were some redox-related and cell signaling-related proteins.All these changed proteins might involve in or affect the pollen and stigma interaction in hybrid yellow-poplar.This study will be helpful in understanding the regulation of Liriodendron genus sexual reproduction.

  17. Chromosomal imbalances in nasopharyngeal carcinoma: a meta-analysis of comparative genomic hybridization results

    Directory of Open Access Journals (Sweden)

    Jin Ping

    2006-01-01

    Full Text Available Abstract Nasopharyngeal carcinoma (NPC is a highly prevalent disease in Southeast Asia and its prevalence is clearly affected by genetic background. Various theories have been suggested for its high incidence in this geographical region but to these days no conclusive explanation has been identified. Chromosomal imbalances identifiable through comparative genomic hybridization may shed some light on common genetic alterations that may be of relevance to the onset and progression of NPC. Review of the literature, however, reveals contradictory results among reported findings possibly related to factors associated with patient selection, stage of disease, differences in methodological details etc. To increase the power of the analysis and attempt to identify commonalities among the reported findings, we performed a meta-analysis of results described in NPC tissues based on chromosomal comparative genomic hybridization (CGH. This meta-analysis revealed consistent patters in chromosomal abnormalities that appeared to cluster in specific "hot spots" along the genome following a stage-dependent progression.

  18. Heart dose reduction in breast cancer treatment with simultaneous integrated boost. Comparison of treatment planning and dosimetry for a novel hybrid technique and 3D-CRT

    Energy Technology Data Exchange (ETDEWEB)

    Joest, Vincent; Kretschmer, Matthias; Sabatino, Marcello; Wuerschmidt, Florian; Dahle, Joerg; Lorenzen, Joern [Radiological Alliance, Hamburg (Germany); Ueberle, Friedrich [University of Applied Sciences, Faculty Life Sciences, Hamburg (Germany)

    2015-09-15

    The present study compares in silico treatment plans of clinically established three-dimensional conformal radiotherapy (3D-CRT) with a hybrid technique consisting of intensity-modulated radiotherapy (IMRT) and volumetric modulated arc radiotherapy (VMAT) during normally fractionated radiation of mammary carcinomas with simultaneous integrated boost on the basis of dose-volume histogram (DVH) parameters. Radiation treatment planning was performed with a hybrid and a 3D-CRT treatment plan for 20 patients. Hybrid plans were implemented with two tangential IMRT fields and a VMAT field in the angular range of the tangents. Verification of the plan was performed with a manufacturer-independent measurement system consisting of a detector array and rotation unit. The mean values of the heart dose for the entire patient collective were 3.6 ± 2.5 Gy for 3D-CRT and 2.9 ± 2.1 Gy for the hybrid technique (p < 0.01). For the left side (n = 10), the mean values for the left anterior descending artery were 21.8 ± 7.4 Gy for 3D-CRT and 17.6 ± 7.4 Gy for the hybrid technique (p < 0.01). The mean values of the ipsilateral lung were 11.9 ± 1.6 Gy for 3D-CRT and 10.5 ± 1.3 Gy for the hybrid technique (p < 0.01). Calculated dose distributions in the hybrid arm were in good accordance with measured dose (on average 95.6 ± 0.5 % for γ < 1 and 3 %/3 mm). The difference of the mean treatment time per fraction was 7 s in favor of 3D-CRT. Compared with the established 3D-CRT technique, the hybrid technique allows for a decrease in dose, particularly of the mean heart and lung dose with comparable target volume acquisition and without disadvantageous low-dose load of contralateral structures. Uncomplicated implementation of the hybrid technique was demonstrated in this context. The hybrid technique combines the advantages of tangential IMRT with the superior sparing of organs at risk by VMAT. (orig.) [German] Die vorliegende Studie vergleicht ''in silico

  19. Array comparative genomic hybridization-based characterization of genetic alterations in pulmonary neuroendocrine tumors

    OpenAIRE

    Voortman, Johannes; Lee, Jih-Hsiang; Killian, Jonathan Keith; Suuriniemi, Miia; Wang, Yonghong; Lucchi, Marco; Smith, William I; Meltzer, Paul; Wang, Yisong; Giaccone, Giuseppe

    2010-01-01

    The goal of this study was to characterize and classify pulmonary neuroendocrine tumors based on array comparative genomic hybridization (aCGH). Using aCGH, we performed karyotype analysis of 33 small cell lung cancer (SCLC) tumors, 13 SCLC cell lines, 19 bronchial carcinoids, and 9 gastrointestinal carcinoids. In contrast to the relatively conserved karyotypes of carcinoid tumors, the karyotypes of SCLC tumors and cell lines were highly aberrant. High copy number (CN) gains were detected in ...

  20. A hybrid MAS/MoM technique for 2D impedance scatterers illuminated by closely positioned sources

    DEFF Research Database (Denmark)

    Larsen, Niels Vesterdal; Breinbjerg, Olav

    2005-01-01

    A hybrid technique for 2D scattering problems with impedance structures and closely positioned illuminating sources is presented. This technique combines the method of auxiliary sources (MAS) with a localized method of moments (MoM) region near the source. Significant improvements over standard MAS...

  1. Comparative analysis of data mining techniques for business data

    Science.gov (United States)

    Jamil, Jastini Mohd; Shaharanee, Izwan Nizal Mohd

    2014-12-01

    Data mining is the process of employing one or more computer learning techniques to automatically analyze and extract knowledge from data contained within a database. Companies are using this tool to further understand their customers, to design targeted sales and marketing campaigns, to predict what product customers will buy and the frequency of purchase, and to spot trends in customer preferences that can lead to new product development. In this paper, we conduct a systematic approach to explore several of data mining techniques in business application. The experimental result reveals that all data mining techniques accomplish their goals perfectly, but each of the technique has its own characteristics and specification that demonstrate their accuracy, proficiency and preference.

  2. A COMPARATIVE STUDY ON MICROAGGREGATION TECHNIQUES FOR MICRODATA PROTECTION

    Directory of Open Access Journals (Sweden)

    Sarat Kumar Chettri

    2012-11-01

    Full Text Available Microaggregation is an efficient Statistical Disclosure Control (SDC perturbative technique for microdataprotection. It is a unified approach and naturally satisfies k-Anonymity without generalization orsuppression of data. Various microaggregation techniques: fixed-size and data-oriented for univariate andmultivariate data exists in the literature. These methods have been evaluated using the standard measures:Disclosure Risk (DR and Information Loss (IL. Every time a new microaggregation technique wasproposed, a better trade-off between risk of disclosing data and data utility was achieved. Though thereexists an optimal univariate microaggregation method but unfortunately an optimal multivariatemicroaggregation method is an NP hard problem. Consequently, several heuristics have been proposed butno such method outperforms the other in all the possible criteria. In this paper we have performed a studyof the various microaggregation techniques so that we get a detailed insight on how to design an efficientmicroaggregation method which satisfies all the criteria

  3. PET/MRI: a novel hybrid imaging technique. Major clinical indications and preliminary experience in Brazil.

    Science.gov (United States)

    Vitor, Taise; Martins, Karine Minaif; Ionescu, Tudor Mihai; Cunha, Marcelo Livorsi da; Baroni, Ronaldo Hueb; Garcia, Marcio Ricardo Taveira; Wagner, Jairo; Campos, Guilherme de Carvalho; Nogueira, Solange Amorim; Guerra, Elaine Gonçalves; Amaro, Edson

    2017-01-01

    In recent years, medical imaging with hybrid techniques has widely accepted and employed in clinical routine. PET/MRI offers significant advantages, including excellent contrast and resolution and reduced ionizing radiation, as compared to well-established PET/CT. Therefore, PET/MRI is a promising modality for oncologic imaging of some regions, such as brain, head and neck, liver and pelvis. This article set out to analyze clinical conditions that could benefit from PET/MRI imaging based on our caseload. The potential of PET/MRI to become the imaging modality of choice for assessment of neurologic and oncologic conditions associated with soft tissues is highlighted. Clinical aspects of PET/MRI and its application to clinical cases are illustrated with examples extracted from the authors' preliminary experience. RESUMO Nos últimos anos, imagens médicas com tecnologias híbridas tornaram-se amplamente aceitas e utilizadas na prática clínica. O PET/RM possui vantagens importantes, incluindo excelentes contrastes e resolução, e menor radiação ionizante, em comparação ao PET/TC. Por isto, é uma modalidade promissora para exames de imagem de pacientes oncológicos, para avaliar o cérebro, cabeça e pescoço, o fígado e a pelve. O objetivo deste artigo foi analisar as situações clínicas que se beneficiariam de exames de PET/RM a partir de uma casuística. Destacamos o potencial desta técnica se tornar o método de imagem de escolha para doenças neurológicas e oncológicas que envolvam partes moles. Os aspectos clínicos de PET/RM e sua aplicação aos casos clínicos são ilustrados com exemplos da experiência inicial dos autores.

  4. Active control of broadband sound transmission through an airplane trim panel using hybrid feedforward and feedback techniques

    Science.gov (United States)

    Ho, Yun-Ren

    This thesis presents a method of actively controlling the sound transmission through two designs of aircraft trim panels using a hybrid feedforward and feedback control technique. The active trim panels are designed for a high stiffness to mass ratio to allow only rigid body modal vibration in the frequency range of interest, thus simplifying the control technique, which is developed to minimize the vibration of a panel and therefore minimize the sound transmission. The hybrid controller consists of an adaptive feedforward (filtered-X LMS algorithm) controller in conjunction with a linear quadratic Gaussian (LQG) feedback controller. The LQG feedback controller is designed to alter the dynamics of the estimated plant model of the filtered-x LMS algorithm, improving control performance for both steady state and transient disturbances. Numerical simulations indicate that the hybrid controller is a more effective method of reducing the vibrations of the panels (and therefore the sound transmission) when compared to using only a feedforward or feedback controller. Experiments were carried out by using two trim panel designs, the first exhibiting only an out-of-plane piston mode, and the second exhibiting three rigid body modes and the first bending mode in control frequency range. For the first trim panel, the implementation of the active control experiment showed that a 5 to 20 dB reduction in both the vibration level and sound pressure level could be achieved over 50 to 500 Hz under a plane acoustic wave excitation. For the second trim panel, the hybrid controller achieved a 5 to 20 dB vibration reduction over the 50 to 400 Hz frequency band under structure-borne excitation. For air-borne excitation, the control scheme produced a 5 to 15 dB vibration reduction over the 70 to 400 Hz bandwidth with a reference microphone attached on the center of the fuselage skin and facing the sound source. In the near field (50 cm from the panel), the sound pressure levels measured

  5. Therapeutic efficacy of a hybrid mandibular advancement device in the management of obstructive sleep apnea assessed with acoustic reflection technique

    Directory of Open Access Journals (Sweden)

    S S Agarwal

    2015-01-01

    Full Text Available Obstructive sleep apnea (OSA is one of the most common forms of sleep-disordered breathing. Various treatment modalities include behavior modification therapy, nasal continuous positive airway pressure (CPAP, oral appliance therapy, and various surgical modalities. Oral appliances are noninvasive and recommended treatment modality for snoring, mild to moderate OSA cases and severe OSA cases when patient is not compliant to CPAP therapy and unwilling for surgery. Acoustic reflection technique (ART is a relatively new modality for three-dimensional assessment of airway caliber in various clinical situations. The accuracy and reproducibility of acoustic rhinometry and acoustic pharyngometry assessment are comparable to computerized tomography and magnetic resonance imaging. This case report highlights the therapeutic efficacy of an innovative customized acrylic hybrid mandibular advancement device in the management of polysomnography diagnosed OSA cases, and the treatment results were assessed by ART.

  6. WRHT: A Hybrid Technique for Detection of Wormhole Attack in Wireless Sensor Networks

    Directory of Open Access Journals (Sweden)

    Rupinder Singh

    2016-01-01

    Full Text Available Wormhole attack is a challenging security threat to wireless sensor networks which results in disrupting most of the routing protocols as this attack can be triggered in different modes. In this paper, WRHT, a wormhole resistant hybrid technique, is proposed, which can detect the presence of wormhole attack in a more optimistic manner than earlier techniques. WRHT is based on the concept of watchdog and Delphi schemes and ensures that the wormhole will not be left untreated in the sensor network. WRHT makes use of the dual wormhole detection mechanism of calculating probability factor time delay probability and packet loss probability of the established path in order to find the value of wormhole presence probability. The nodes in the path are given different ranking and subsequently colors according to their behavior. The most striking feature of WRHT consists of its capacity to defend against almost all categories of wormhole attacks without depending on any required additional hardware such as global positioning system, timing information or synchronized clocks, and traditional cryptographic schemes demanding high computational needs. The experimental results clearly indicate that the proposed technique has significant improvement over the existing wormhole attack detection techniques.

  7. Potentials of Optical Damage Assessment Techniques in Automotive Crash-Concepts composed of FRP-Steel Hybrid Material Systems

    Science.gov (United States)

    Dlugosch, M.; Spiegelhalter, B.; Soot, T.; Lukaszewicz, D.; Fritsch, J.; Hiermaier, S.

    2017-05-01

    With car manufacturers simultaneously facing increasing passive safety and efficiency requirements, FRP-metal hybrid material systems are one way to design lightweight and crashworthy vehicle structures. Generic automotive hybrid structural concepts have been tested under crash loading conditions. In order to assess the state of overall damage and structural integrity, and primarily to validate simulation data, several NDT techniques have been assessed regarding their potential to detect common damage mechanisms in such hybrid systems. Significant potentials were found particularly in combining 3D-topography laser scanning and X-Ray imaging results. Ultrasonic testing proved to be limited by the signal coupling quality on damaged or curved surfaces.

  8. Hybrid Feature Based War Scene Classification using ANN and SVM: A Comparative Study

    Directory of Open Access Journals (Sweden)

    Shanmugam A

    2011-05-01

    Full Text Available In this paper we are proposing a hybrid feature extraction method for classifying the war scene from the natural scene. For this purpose two set of image categories are taken viz., opencountry & war tank. Byusing the hybrid method, features are extracted from the images/scenes. The extracted features are trained and tested with (i Artificial Neural Networks (ANN using feed forward back propagationalgorithm and (ii Support Vector Machines (SVM using Radial basis kernel functions with p=5. The results are also compared with the commonly used feature extraction methods such as haar wavelet,daubechies(db4 wavelet, Zernike moments, Invariant moments, co-occurrence features and statistical moments. The comparative results are proving efficiency of the proposed hybrid feature extraction method (i.e., the combination of GLCM & Statistical moments in war scene classification problems. It can be concluded that the proposed work significantly and directly contributes to scene classification and its new applications. The complete work is experimented in Matlab 7.6.0 using real world dataset.

  9. COMPARATIVE ANALYSIS OF TRAUMA REDUCTION TECHNIQUES IN LAPAROSCOPIC CHOLECYSTECTOMY

    Directory of Open Access Journals (Sweden)

    Anton Koychev

    2017-02-01

    Full Text Available Nowadays, there is no operation in the field of abdominal surgery, which cannot be performed laparoscopically. Both surgeons and patients have at their disposal an increasing number of laparoscopic techniques to perform the surgical interventions. The prevalence of laparoscopic cholecystectomy is due to its undeniable advantages over the traditional open surgery, namely small invasiveness, reducing the frequency and severity of perioperative complications, the incomparably better cosmetic result, and the so much better medical and social, and medical and economic efficiency. Single-port laparoscopic techniques to perform laparoscopic cholecystectomy are acceptable alternative to the classical conventional multi-port techniques. The security of the laparoscopic cholecystectomy requires precise identification of anatomical structures and precise observing the diagnostic and treatment protocols, and criteria for selection of patients to be treated surgically by these methods.

  10. Comparative study of Authorship Identification Techniques for Cyber Forensics Analysis

    Directory of Open Access Journals (Sweden)

    Smita Nirkhi

    2013-06-01

    Full Text Available Authorship Identification techniques are used to identify the most appropriate author from group of potential suspects of online messages and find evidences to support the conclusion. Cybercriminals make misuse of online communication for sending blackmail or a spam email and then attempt to hide their true identities to void detection.Authorship Identification of online messages is the contemporary research issue for identity tracing in cyber forensics. This is highly interdisciplinary area as it takes advantage of machine learning, information retrieval, and natural language processing. In this paper, a study of recent techniques and automated approaches to attributing authorship of online messages is presented. The focus of this review study is to summarize all existing authorship identification techniques used in literature to identify authors of online messages. Also it discusses evaluation criteria and parameters for authorship attribution studies and list open questions that will attract future work in this area.

  11. A comparative hybridization analysis of yeast DNA with Paramecium parafusin- and different phosphoglucomutase-specific probes.

    Science.gov (United States)

    Wyroba, E; Satir, B H

    2000-01-01

    Molecular probes designed for the parafusin (PFUS), the Paramecium exocytic-sensitive phosphoglycoprotein, gave distinct hybridization patterns in Saccharomyces cerevisiae genomic DNA when compared with different phosphoglucomutase specific probes. These include two probes identical to segments of yeast phosphoglucomutase (PGM) genes 1 and 2. Neither of the PGM probes revealed the 7.4 and 5.9 kb fragments in Bgl II-cut yeast DNA digest detected with the 1.6 kb cloned PFUS cDNA and oligonucleotide constructed to the PFUS region (insertion 3--I-3) not found in other species. PCR amplification with PFUS-specific primers generated yeast DNA-species of the predicted molecular size which hybridized to the I-3 probe. A search of the yeast genome database produced an unassigned nucleotide sequence that showed 55% identity to parafusin gene and 37% identity to PGM2 (the major isoform of yeast phosphoglucomutase) within the amplified region.

  12. Detection of chromosomal aberrations in seminomatous germ cell tumours using comparative genomic hybridization

    DEFF Research Database (Denmark)

    Ottesen, A M; Kirchhoff, M; Rajpert-De Meyts, Ewa

    1997-01-01

    Comparative genomic hybridization (CGH) was used to evaluate tissue specimens from 16 seminomas in order to elucidate the pathogenesis of germ cell tumours in males. A characteristic pattern of losses and gains within the entire genomes was detected in 94% of the seminomas by comparing the ratio...... was demonstrated in the seminomas by improved detection criteria, which increased specificity and sensitivity. The rare aberrations, which appeared only in tumours in improved detection criteria, which increased specificity and sensitivity. The rare aberrations, which appeared only in tumours in clinical stage II...

  13. Hydrophobicity control by a supercritical drying technique in a sol–gel process with hybrid materials

    Energy Technology Data Exchange (ETDEWEB)

    Ren, Hongbo; Qiao, Zemin; Liu, Xiao; Cui, Xudong, E-mail: xudcui@gmail.com

    2015-10-15

    Highlights: • Sol–gel route is combined with polymerization without using modifier. • Supercritical drying control is the key to obtain super-hydrophobic surfaces. • The whole fabrication is technologically controllable and with low costs. • The production rate is higher than 90%. • The method provides a cost-effective way for industry applications. - Abstract: We successfully synthesized one type of cheap super-hydrophobic hybrid porous materials in a sol–gel process. In this route, hydrophilic polymers and TEOS-base sol are used as precursors, the ultraviolet ray-initiated polymerization and supercritical fluid drying techniques are combined together to fulfill this task. All fabricated samples exhibit lotus-leaf-like surface structures with super-hydrophobicity. The underlying mechanisms are carefully investigated using a field-emission scanning electron microscopy (FESEM) and an X-ray photoelectron spectroscopy (XPS). We found that a well-controlled drying process is crucial to the formation of such super-hydrophobic surfaces. As high as 90% production rate is obtained in our route and thus, it might provide a cost-effective way to produce super-hydrophobic hybrid materials for industry applications.

  14. Adaptation of Hybrid FSO/RF Communication System Using Puncturing Technique

    Directory of Open Access Journals (Sweden)

    M. N. Khan

    2016-12-01

    Full Text Available Spectrum of radio frequency (RF communications is limited and expensive to install new applications. Free space optical (FSO communication is a viable technology which offers enormous bandwidth, license free installation, inexpensive deployment and error prone links. The FSO links degrade significantly due to the varying atmospheric and weather conditions (fog, cloud, snow, haze and combination of these. We propose a hybrid FSO/RF communication system which adapts the varying nature of atmosphere and weather. For the adaption of varying atmosphere and weather scenarios, we develop a novel optimization algorithm. The proposed algorithm is based on the well-known puncturing technique. We provide an extrinsic information transfer (EXIT chart for the binary and quaternary mapping scheme for the proposed communication system. We simulate the proposed algorithm for the hybrid communication system and analyze the system performance. The proposed algorithm is computationally less expensive and provide better performance gains over varying atmosphere and weather conditions. The algorithm is suitable for fast speed applications.

  15. Comparative Performance of Hybrid and Elite Inbred Rice Varieties with respect to Their Source-Sink Relationship

    Directory of Open Access Journals (Sweden)

    Md Moinul Haque

    2015-01-01

    Full Text Available Hybrid rice varieties have higher yield potential over inbred varieties. This improvement is not always translated to the grain yield and its physiological causes are still unclear. In order to clarify it, two field experiments were conducted including two popular indica hybrids (BRRI hybrid dhan2 and Heera2 and one elite inbred (BRRI dhan45 rice varieties. Leaf area index, chlorophyll status, and photosynthetic rate of flag leaf, postheading crop growth rate, shoot reserve translocation, source-sink relation and yield, and its attributes of each variety were comprehensively analyzed. Both hybrid varieties outyielded the inbred. However, the hybrids and inbred varieties exhibited statistically identical yield in late planting. Both hybrids accumulated higher amount of biomass before heading and exhibited greater remobilization of assimilates to the grain in early plantings compared to the inbred variety. Filled grain (% declined significantly at delayed planting in the hybrids compared to elite inbred due to increased temperature impaired-inefficient transport of assimilates. Flag leaf photosynthesis parameters were higher in the hybrid varieties than those of the inbred variety. Results suggest that greater remobilization of shoot reserves to the grain rendered higher yield of hybrid rice varieties.

  16. A millisecond micro-RNA separation technique by a hybrid structure of nanopillars and nanoslits.

    Science.gov (United States)

    Wu, Qiong; Kaji, Noritada; Yasui, Takao; Rahong, Sakon; Yanagida, Takeshi; Kanai, Masaki; Nagashima, Kazuki; Tokeshi, Manabu; Kawai, Tomoji; Baba, Yoshinobu

    2017-03-08

    A millisecond micro-RNA separation of a mixture of total RNA and genomic DNA, extracted from cultured HeLa cells, was successfully achieved using a hybrid structure of nanopillars and nanoslits contained inside a microchannel. The nanopillars, 250-nm in diameter and 100-nm in height, were fabricated with a 750-nm space inside the nanoslits, which were 100-nm in height and 25-μm in width; the nanopillars were then applied as a new sieve matrix. This ultra-fast technique for the separation of miRNA can be an effective pretreatment for semiconductor nanopore DNA sequencing, which has an optimum reading speed of 1 base/ms to obtain effective signal-to-noise ratio and discriminate each base by ion or tunneling current during the passage of nucleic acids.

  17. Modified Genetic Algorithm for DNA Sequence Assembly by Shotgun and Hybridization Sequencing Techniques

    Directory of Open Access Journals (Sweden)

    Prof.Narayan Kumar Sahu

    2012-09-01

    Full Text Available Since the advent of rapid DNA sequencing methods in 1976, scientists have had the problem of inferring DNA sequences from sequenced fragments. Shotgun sequencing is a well-established biological and computational method used in practice. Many conventional algorithms for shotgun sequencing are based on the notion of pair wise fragment overlap. While shotgun sequencing infers a DNA sequence given the sequences of overlapping fragments, a recent and complementary method, called sequencing by hybridization (SBH, infers a DNA sequence given the set of oligomers that represents all sub words of some fixed length, k. In this paper, we propose a new computer algorithm for DNA sequence assembly that combines in a novel way the techniques of both shotgun and SBH methods. Based on our preliminary investigations, the algorithm promises- to be very fast and practical for DNA sequence assembly [1].

  18. Dual Fixation of Calcaneal Tuberosity Avulsion with Concomitant Achilles Tendon Rupture: A Novel Hybrid Technique

    Directory of Open Access Journals (Sweden)

    Gautham Prabhakar

    2017-01-01

    Full Text Available Fracture of the calcaneal tuberosity with a concomitant Achilles tendon rupture presents a difficult challenge for the treating surgeon. The ultimate goal of treatment is to restore function of both the gastrocnemius-soleus complex and the Achilles tendon. This particular subset of fractures occurs often in diabetics and elderly patients with osteoporosis making fixation of the displaced fragment rather complex. If the Achilles tendon disruption is only discovered later once the fracture is healed, subsequent management is difficult with surgical treatment being more morbid. While this is a rare injury, the consequences of a missed chronic Achilles tendon disruption are severe with significant dysfunction. It is therefore important to have a high index of suspicion for concomitant injury and to be prepared for dual fixation. We present a novel hybrid surgical fixation technique, which may be used in this instance.

  19. Estimation of radon concentrations in coal mines using a hybrid technique calibration curve

    Energy Technology Data Exchange (ETDEWEB)

    Jamil, K.; Ali, S. [PINSTECH, Islamabad (Pakistan). Radiation Physics Division, Environmental Radiation Group

    2001-07-01

    A calibration curve was generated using Ra-226 activity concentration measured by a HPGe detector-based gamma-ray spectrometer versus alpha-track-density rate due to radon and its progeny on CR-39 track detector. Using the slops of the experimentally determined curve in the units of Becquerel per kilogram (Bq kg{sup -1}) per unit alpha -track-density per hour (cm{sup -2}h{sup -1}), radon concentrations (Bq m{sup -3}) were estimated using coal samples from various coal mines in two provinces of Pakistan, Punjab and Balochistan. Consequently, radon dose rates were computed in the simulated environment of the coal mines. These results provide only a screening method to indicate the radon dose in coal mines, It was shown that the actual measurements of radon concentrations in the coal mines are in agreement with the estimated radon concentrations using the hybrid-technique calibration curve.

  20. A millisecond micro-RNA separation technique by a hybrid structure of nanopillars and nanoslits

    Science.gov (United States)

    Wu, Qiong; Kaji, Noritada; Yasui, Takao; Rahong, Sakon; Yanagida, Takeshi; Kanai, Masaki; Nagashima, Kazuki; Tokeshi, Manabu; Kawai, Tomoji; Baba, Yoshinobu

    2017-01-01

    A millisecond micro-RNA separation of a mixture of total RNA and genomic DNA, extracted from cultured HeLa cells, was successfully achieved using a hybrid structure of nanopillars and nanoslits contained inside a microchannel. The nanopillars, 250-nm in diameter and 100-nm in height, were fabricated with a 750-nm space inside the nanoslits, which were 100-nm in height and 25-μm in width; the nanopillars were then applied as a new sieve matrix. This ultra-fast technique for the separation of miRNA can be an effective pretreatment for semiconductor nanopore DNA sequencing, which has an optimum reading speed of 1 base/ms to obtain effective signal-to-noise ratio and discriminate each base by ion or tunneling current during the passage of nucleic acids. PMID:28272420

  1. Comparative genomics among Saccharomyces cerevisiae × Saccharomyces kudriavzevii natural hybrid strains isolated from wine and beer reveals different origins

    Directory of Open Access Journals (Sweden)

    Peris David

    2012-08-01

    Full Text Available Abstract Background Interspecific hybrids between S. cerevisiae × S. kudriavzevii have frequently been detected in wine and beer fermentations. Significant physiological differences among parental and hybrid strains under different stress conditions have been evidenced. In this study, we used comparative genome hybridization analysis to evaluate the genome composition of different S. cerevisiae × S. kudriavzevii natural hybrids isolated from wine and beer fermentations to infer their evolutionary origins and to figure out the potential role of common S. kudriavzevii gene fraction present in these hybrids. Results Comparative genomic hybridization (CGH and ploidy analyses carried out in this study confirmed the presence of individual and differential chromosomal composition patterns for most S. cerevisiae × S. kudriavzevii hybrids from beer and wine. All hybrids share a common set of depleted S. cerevisiae genes, which also are depleted or absent in the wine strains studied so far, and the presence a common set of S. kudriavzevii genes, which may be associated with their capability to grow at low temperatures. Finally, a maximum parsimony analysis of chromosomal rearrangement events, occurred in the hybrid genomes, indicated the presence of two main groups of wine hybrids and different divergent lineages of brewing strains. Conclusion Our data suggest that wine and beer S. cerevisiae × S. kudriavzevii hybrids have been originated by different rare-mating events involving a diploid wine S. cerevisiae and a haploid or diploid European S. kudriavzevii strains. Hybrids maintain several S. kudriavzevii genes involved in cold adaptation as well as those related to S. kudriavzevii mitochondrial functions.

  2. Development of a fluorescent in situ hybridization (FISH) technique for visualizing CGMMV in plant tissues.

    Science.gov (United States)

    Shargil, D; Zemach, H; Belausov, E; Lachman, O; Kamenetsky, R; Dombrovsky, A

    2015-10-01

    Cucumber green mottle mosaic virus (CGMMV), which belongs to the genus Tobamovirus, is a major pathogen of cucurbit crops grown indoors and in open fields. Currently, immunology (e.g., ELISA) and molecular amplification techniques (e.g., RT-PCR) are employed extensively for virus detection in plant tissues and commercial seed lots diagnostics. In this study, a fluorescent in situ hybridization (FISH) technique, using oligonucleotides whose 5'-terminals were labeled with red cyanine 3 (Cy3) or green fluorescein isothiocyanate (FITC), was developed for the visualization of the pathogen in situ. This simple and reliable method allows detection and localization of CGMMV in the vegetative and reproductive tissues of cucumber and melon. When this technique was applied in male flowers, anther tissues were found to be infected; whereas the pollen grains were found to be virus-free. These results have meaningful epidemiological implications for the management of CGMMV, particularly with regard to virus transfer via seed and the role of insects as CGMMV vectors.

  3. A hybrid technique for private location-based queries with database protection

    KAUST Repository

    Ghinita, Gabriel

    2009-01-01

    Mobile devices with global positioning capabilities allow users to retrieve points of interest (POI) in their proximity. To protect user privacy, it is important not to disclose exact user coordinates to un-trusted entities that provide location-based services. Currently, there are two main approaches to protect the location privacy of users: (i) hiding locations inside cloaking regions (CRs) and (ii) encrypting location data using private information retrieval (PIR) protocols. Previous work focused on finding good trade-offs between privacy and performance of user protection techniques, but disregarded the important issue of protecting the POI dataset D. For instance, location cloaking requires large-sized CRs, leading to excessive disclosure of POIs (O(|D|) in the worst case). PIR, on the other hand, reduces this bound to , but at the expense of high processing and communication overhead. We propose a hybrid, two-step approach to private location-based queries, which provides protection for both the users and the database. In the first step, user locations are generalized to coarse-grained CRs which provide strong privacy. Next, a PIR protocol is applied with respect to the obtained query CR. To protect excessive disclosure of POI locations, we devise a cryptographic protocol that privately evaluates whether a point is enclosed inside a rectangular region. We also introduce an algorithm to efficiently support PIR on dynamic POI sub-sets. Our method discloses O(1) POI, orders of magnitude fewer than CR- or PIR-based techniques. Experimental results show that the hybrid approach is scalable in practice, and clearly outperforms the pure-PIR approach in terms of computational and communication overhead. © 2009 Springer Berlin Heidelberg.

  4. Comparative analysis of affinity-based 5-hydroxymethylation enrichment techniques

    Science.gov (United States)

    Thomson, John P.; Hunter, Jennifer M.; Nestor, Colm E.; Dunican, Donncha S.; Terranova, Rémi; Moggs, Jonathan G.; Meehan, Richard R.

    2013-01-01

    The epigenetic modification of 5-hydroxymethylcytosine (5hmC) is receiving great attention due to its potential role in DNA methylation reprogramming and as a cell state identifier. Given this interest, it is important to identify reliable and cost-effective methods for the enrichment of 5hmC marked DNA for downstream analysis. We tested three commonly used affinity-based enrichment techniques; (i) antibody, (ii) chemical capture and (iii) protein affinity enrichment and assessed their ability to accurately and reproducibly report 5hmC profiles in mouse tissues containing high (brain) and lower (liver) levels of 5hmC. The protein-affinity technique is a poor reporter of 5hmC profiles, delivering 5hmC patterns that are incompatible with other methods. Both antibody and chemical capture-based techniques generate highly similar genome-wide patterns for 5hmC, which are independently validated by standard quantitative PCR (qPCR) and glucosyl-sensitive restriction enzyme digestion (gRES-qPCR). Both antibody and chemical capture generated profiles reproducibly link to unique chromatin modification profiles associated with 5hmC. However, there appears to be a slight bias of the antibody to bind to regions of DNA rich in simple repeats. Ultimately, the increased specificity observed with chemical capture-based approaches makes this an attractive method for the analysis of locus-specific or genome-wide patterns of 5hmC. PMID:24214958

  5. Treatment of breast cancer with simultaneous integrated boost in hybrid plan technique. Influence of flattening filter-free beams

    Energy Technology Data Exchange (ETDEWEB)

    Bahrainy, Marzieh; Kretschmer, Matthias; Joest, Vincent; Kasch, Astrid; Wuerschmidt, Florian; Dahle, Joerg; Lorenzen, Joern [Radiologische Allianz, Hamburg (Germany)

    2016-05-15

    The present study compares in silico treatment plans using hybrid plan technique during hypofractionated radiation of mammary carcinoma with simultaneous integrated boost (SIB). The influence of 6 MV photon radiation in flattening filter free (FFF) mode against the clinical standard flattening filter (FF) mode is to be examined. RT planning took place with FF and FFF radiation plans for 10 left-sided breast cancer patients. Hybrid plans were realised with two tangential IMRT fields and one VMAT field. The dose prescription was in line with the guidelines in the ARO-2010-01 study. The dosimetric verification took place with a manufacturer-independent measurement system. Required dose prescriptions for the planning target volumes (PTV) were achieved for both groups. The average dose values of the ipsi- and contralateral lung and the heart did not differ significantly. The overall average incidental dose to the left anterior descending artery (LAD) of 8.24 ± 3.9 Gy in the FFF group and 9.05 ± 3.7 Gy in the FF group (p < 0.05) were found. The dosimetric verifications corresponded to the clinical requirements. FFF-based RT plans reduced the average treatment time by 17 s/fraction. In comparison to the FF-based hybrid plan technique the FFF mode allows further reduction of the average LAD dose for comparable target volume coverage without adverse low-dose exposure of contralateral structures. The combination of hybrid plan technique and 6 MV photon radiation in the FFF mode is suitable for use with hypofractionated dose schemes. The increased dose rate allows a substantial reduction of treatment time and thus beneficial application of the deep inspiration breath hold technique. (orig.) [German] Vergleich der ''In-silico''-Bestrahlungsplaene der klinisch etablierten Hybridplan-Technik bei hypofraktionierter Bestrahlung des Mammakarzinoms mit simultan integriertem Boost (SIB). Untersucht wird der Einfluss von 6MV-Photonenstrahlung im Flattening

  6. Comparative study of hybrid RANS-LES models for separated flows

    Science.gov (United States)

    Kumar, G.; Lakshmanan, S. K.; Gopalan, H.; De, A.

    2016-06-01

    Hybrid RANS-LES models are proven to be capable of predicting massively separated flows with reasonable computation cost. In this paper, Spalart-Allmaras (S-A) based detached eddy simulation (DES) model and three SST based hybrid models with different RANS to LES switching criteriaare investigated. The flow over periodic hill at Re = 10,595 is chosen as the benchmark for comparing the performance of the different models due to the complex flow physics and reasonablecomputational cost. The model performances are evaluated based on their prediction capabilities of velocity and stress profiles, and separation and reattachment point. The simulated results are validatedagainst experimental and numerical results available in literature. The S-A DES model predicted separation bubble accurately at the top of the hill, as reported earlier in experiments and other numerical results. This model also correctly predicted velocity and stress profiles in recirculation region. However, the performance of this model was poor in the post reattachment region. On the other hand, the k-ω SST based hybrid models performed poorly in recirculation region, but it fairly predicted stress profiles in post reattachment region.

  7. Comparative study of two different powertrains for a fuel cell hybrid bus

    Science.gov (United States)

    Gao, Dawei; Jin, Zhenhua; Zhang, Junzhi; Li, Jianqiu; Ouyang, Minggao

    2016-07-01

    The powertrain plays an essential role in improving the tractive performance and the fuel consumption of fuel cell hybrid vehicles. This paper presents a comparative study of two different powertrains for fuel cell hybrid buses. The significant difference between the two powertrains lies in the types and arrangements of the electrical motor. One powertrain employs an induction motor to drive the vehicle, while the other powertrain adopts two permanent magnetic synchronous motors for near-wheel propulsion. Besides, the tiny difference between the proposed powertrain is the supply path of the fuel cell accessories, which can have an effect on the powertrain efficiency. The component parameters and energy management strategies for the two powertrain are determined. The fuel cell hybrid buses equipped with the two powertrains are developed, and some road tests are achieved, according to the chosen procedures or driving cycles. The paper focuses on the tractive performance and energy analysis of the powertrains based on the testing results. Finally, the paper summarizes the relative merits of the proposed powertrains.

  8. Model Predictive Control techniques with application to photovoltaic, DC Microgrid, and a multi-sourced hybrid energy system

    Science.gov (United States)

    Shadmand, Mohammad Bagher

    Renewable energy sources continue to gain popularity. However, two major limitations exist that prevent widespread adoption: availability and variability of the electricity generated and the cost of the equipment. The focus of this dissertation is Model Predictive Control (MPC) for optimal sized photovoltaic (PV), DC Microgrid, and multi-sourced hybrid energy systems. The main considered applications are: maximum power point tracking (MPPT) by MPC, droop predictive control of DC microgrid, MPC of grid-interaction inverter, MPC of a capacitor-less VAR compensator based on matrix converter (MC). This dissertation firstly investigates a multi-objective optimization technique for a hybrid distribution system. The variability of a high-penetration PV scenario is also studied when incorporated into the microgrid concept. Emerging (PV) technologies have enabled the creation of contoured and conformal PV surfaces; the effect of using non-planar PV modules on variability is also analyzed. The proposed predictive control to achieve maximum power point for isolated and grid-tied PV systems speeds up the control loop since it predicts error before the switching signal is applied to the converter. The low conversion efficiency of PV cells means we want to ensure always operating at maximum possible power point to make the system economical. Thus the proposed MPPT technique can capture more energy compared to the conventional MPPT techniques from same amount of installed solar panel. Because of the MPPT requirement, the output voltage of the converter may vary. Therefore a droop control is needed to feed multiple arrays of photovoltaic systems to a DC bus in microgrid community. Development of a droop control technique by means of predictive control is another application of this dissertation. Reactive power, denoted as Volt Ampere Reactive (VAR), has several undesirable consequences on AC power system network such as reduction in power transfer capability and increase in

  9. An Alternate Vista in Rehabilitation of Cranial Defects: Combining Digital and Manual Techniques to Fabricate a Hybrid Cranioplast.

    Science.gov (United States)

    Kaur, Harsimran; Nanda, Aditi; Koli, Dheeraj; Verma, Mahesh; Singh, Hukum; Bishnoi, Ishu; Pathak, Pooja; Gupta, Ankur

    2015-06-01

    The desired features of a cranioplast include providing an acceptable contour, continuity with the remaining skull (marginal adaptation), improvising the aesthetic outcome, providing a strengthened prosthesis to avoid fracture in case of repeat trauma, and protecting the remaining neurological structures. Combining digital and manual techniques to fabricate a hybrid polymethylmethacrylate cranioplast during the rehabilitation of a pediatric patient with cranial defect has been described. Utilization of digital techniques (rapid prototyping to obtain skull analog) and manual (hand) sculpting of the prosthesis strengthened with glass fiber enabled the authors to fabricate a hybrid cranioplast. Satisfactory outcome was achieved.

  10. Karyotype variability in tropical maize sister inbred lines and hybrids compared with KYS standard line.

    Science.gov (United States)

    Mondin, Mateus; Santos-Serejo, Janay A; Bertäo, Mônica R; Laborda, Prianda; Pizzaia, Daniel; Aguiar-Perecin, Margarida L R

    2014-01-01

    Maize karyotype variability has been extensively investigated. The identification of maize somatic and pachytene chromosomes has improved with the development of fluorescence in situ hybridization (FISH) using tandemly repeated DNA sequences as probes. We identified the somatic chromosomes of sister inbred lines that were derived from a tropical flint maize population (Jac Duro [JD]), and hybrids between them, using FISH probes for the 180-bp knob repeat, centromeric satellite (CentC), centromeric satellite 4 (Cent4), subtelomeric clone 4-12-1, 5S ribosomal DNA and nucleolus organizing region DNA sequences. The observations were integrated with data based on C-banded mitotic metaphases and conventional analysis of pachytene chromosomes. Heterochromatic knobs visible at pachynema were coincident with C-bands and 180-bp FISH signals on somatic chromosomes, and most of them were large. Variation in the presence of some knobs was observed among lines. Small 180-bp knob signals were invariant on the short arms of chromosomes 1, 6, and 9. The subtelomeric 4-12-1 signal was also invariant and useful for identifying some chromosomes. The centromere location of chromosomes 2 and 4 differed from previous reports on standard maize lines. Somatic chromosomes of a JD line and the commonly used KYS line were compared by FISH in a hybrid of these lines. The pairing behavior of chromosomes 2 and 4 at pachytene stage in this hybrid was investigated using FISH with chromosome-specific probes. The homologues were fully synapsed, including the 5S rDNA and CentC sites on chromosome 2, and Cent4 and subtelomeric 4-12-1 sites on chromosome 4. This suggests that homologous chromosomes could pair through differential degrees of chromatin packaging in homologous arms differing in size. The results contribute to current knowledge of maize global diversity and also raise questions concerning the meiotic pairing of homologous chromosomes possibly differing in their amounts of repetitive DNA.

  11. Comparative Analysis of Data Mining Techniques for Malaysian Rainfall Prediction

    Directory of Open Access Journals (Sweden)

    Suhaila Zainudin

    2016-12-01

    Full Text Available Climate change prediction analyses the behaviours of weather for a specific time. Rainfall forecasting is a climate change task where specific features such as humidity and wind will be used to predict rainfall in specific locations. Rainfall prediction can be achieved using classification task under Data Mining. Different techniques lead to different performances depending on rainfall data representation including representation for long term (months patterns and short-term (daily patterns. Selecting an appropriate technique for a specific duration of rainfall is a challenging task. This study analyses multiple classifiers such as Naïve Bayes, Support Vector Machine, Decision Tree, Neural Network and Random Forest for rainfall prediction using Malaysian data. The dataset has been collected from multiple stations in Selangor, Malaysia. Several pre-processing tasks have been applied in order to resolve missing values and eliminating noise. The experimental results show that with small training data (10% from 1581 instances Random Forest correctly classified 1043 instances. This is the strength of an ensemble of trees in Random Forest where a group of classifiers can jointly beat a single classifier.

  12. A novel fluorescent in situ hybridization technique for detection of Rickettsia spp. in archival samples

    DEFF Research Database (Denmark)

    Svendsen, Claus Bo; Boye, Mette; Struve, Carsten

    2009-01-01

    A novel, sensitive and specific method for detecting Rickettsia spp. in archival samples is described. The method involves the use of fluorescently marked oligonucleotide probes for in situ hybridization. Specific hybridization of Ricekttsia was found without problems of cross-reactions with bact......A novel, sensitive and specific method for detecting Rickettsia spp. in archival samples is described. The method involves the use of fluorescently marked oligonucleotide probes for in situ hybridization. Specific hybridization of Ricekttsia was found without problems of cross...

  13. Comparative genomic hybridization: technical development and cytogenetic aspects for routine use in clinical laboratories.

    Science.gov (United States)

    Lapierre, J M; Cacheux, V; Da Silva, F; Collot, N; Hervy, N; Wiss, J; Tachdjian, G

    1998-01-01

    Comparative genomic hybridization (CGH) offers a new global approach for detection of chromosomal material imbalances of the entire genome in a single experiment without cell culture. In this paper, we discuss the technical development and the cytogenetic aspects of CGH in a clinical laboratory. Based only on the visual inspection of CGH metaphase spreads, the correct identification of numerical and structural anomalies are reported. No commercial image analysis software was required in these experiments. We have demonstrated that this new technology can be set up easily for routine use in a clinical cytogenetics laboratory.

  14. Array comparative genomic hybridization analysis of small supernumerary marker chromosomes in human infertility.

    Science.gov (United States)

    Guediche, N; Tosca, L; Kara Terki, A; Bas, C; Lecerf, L; Young, J; Briand-Suleau, A; Tou, B; Bouligand, J; Brisset, S; Misrahi, M; Guiochon-Mantel, A; Goossens, M; Tachdjian, G

    2012-01-01

    Small supernumerary marker chromosomes (sSMC) are structurally abnormal chromosomes that cannot be unambiguously identified by conventional banding cytogenetics. This study describes four patients with sSMC in relation with infertility. Patient 1 had primary infertility. His brother, fertile, carried the same sSMC (patient 2). Patient 3 presented polycystic ovary syndrome and patient 4 primary ovarian insufficiency. Cytogenetic studies, array comparative genomic hybridization (CGH) and sperm analyses were compared with cases previously reported. sSMC corresponded to the 15q11.2 region (patients 1 and 2), the centromeric chromosome 15 region (patient 3) and the 21p11.2 region (patient 4). Array CGH showed 3.6-Mb gain for patients 1 and 2 and 0.266-Mb gain for patient 4. Sperm fluorescent in-situ hybridization analyses found ratios of 0.37 and 0.30 of sperm nuclei with sSMC(15) for patients 1 and 2, respectively (P < 0.001). An increase of sperm nuclei with disomy X, Y and 18 was noted for patient 1 compared with control and patient 2 (P < 0.001). Among the genes mapped in the unbalanced chromosomal regions, POTE B and BAGE are related to the testis and ovary, respectively. The implication of sSMC in infertility could be due to duplication, but also to mechanical effects perturbing meiosis.

  15. Genomic Alterations in Sporadic Synchronous Primary Breast Cancer Using Array and Metaphase Comparative Genomic Hybridization

    Directory of Open Access Journals (Sweden)

    Arezou A. Ghazani

    2007-06-01

    Full Text Available Synchronous primary breast cancer describes the occurrence of multiple tumors affecting one or both breasts at initial diagnosis. This provides a unique opportunity to identify tissue-specific genomic markers that characterize each tumor while controlling for the individual genetic background of a patient. The aim of this study was to examine the genomic alterations and degree of similarity between synchronous cancers. Using metaphase comparative genomic hybridization and array comparative genomic hybridization (aCGH, the genomic alterations of 23 synchronous breast cancers from 10 patients were examined at both chromosomal and gene levels. Synchronous breast cancers, when compared to their matched counterparts, were found to have a common core set of genetic alterations, with additional unique changes present in each. They also frequently exhibited features distinct from the more usual solitary primary breast cancers. The most frequent genomic alterations included chromosomal gains of 1q, 3p, 4q, and 8q, and losses of 11q, 12q, 16q, and 17p. aCGH identified copy number amplification in regions that are present in all 23 tumor samples, including 1p31.3–1p32.3 harboring JAK1. Our findings suggest that synchronous primary breast cancers represent a unique type of breast cancer and, at least in some instances, one tumor may give rise to the other.

  16. Classification techniques in quantitative comparative research : a meta-comparison

    OpenAIRE

    Nijkamp, P.; Rietveld, P.; Spierdijk, L.

    1999-01-01

    This paper emphasizes the importance of quantitative comparative research in the social sciences. For that purpose a great variety of modem classification methods is available. The paper aims to give a selective overview of major classes of these methods and highlights the advantages and limitations of these methods.

  17. STUDY OF MECHANICAL PROPERTIES OF BANANA-COIR HYBRID COMPOSITE USING EXPERIMENTAL AND FEM TECHNIQUES

    Directory of Open Access Journals (Sweden)

    T. Hariprasad

    2013-06-01

    Full Text Available The use of natural fibers as reinforcement in polymers has gained importance in recent years due to their eco-friendly nature. Thus, an investigation has been undertaken on banana-coir, which is a natural fiber abundantly available in India. Natural fibers are not only strong and lightweight, but also relatively very cheap. Composite plates were prepared with resin 392 g, coir 54 g, and banana 69 g. The purpose of this work is to establish the tensile, flexural, and impact properties of banana-coir reinforced composite materials with a thermo set for treated and untreated fibers. The resin used was epoxy (EP306. The tensile and impact tests showed that treated banana-coir epoxy hybrid composites have higher tensile strength and impact strength than untreated composites. However, untreated fiber composites have greater flexural strength than the treated fiber composites. The finite element analysis (FEA software ANSYS has been employed successfully to evaluate the properties. The stresses at the interface of the banana-coir and matrix, induced by the different loading conditions, were applied to predict the tensile, impact, and flexural properties by using the FEA models. The model output was compared with the experimental results and found to be close. This analysis is useful for realizing the advantages of hybrid fiber reinforced composites in structural applications and for identifying where the stresses are critical and damage the interface under varying loading conditions.

  18. DRYING OF EMPTY FRUIT BUNCHES AS WASTED BIOMASS BY HYBRID SOLAR–THERMAL DRYING TECHNIQUE

    Directory of Open Access Journals (Sweden)

    H. H. Al-Kayiem

    2013-12-01

    Full Text Available Solar drying of EFB is highly feasible and economic, but the solar drying process is interrupted during cloudy or rainy days and also at night. In the present paper, a combined solar, as the main heat input, and biomass burner, as an auxiliary source of thermal energy, has been investigated experimentally to dry EFB. An experimental model consisting of a solar dryer integrated with a thermal backup unit was designed and fabricated. A series of experimental measurements were carried out in four different drying modes, namely, open sun, mixed direct and indirect solar, thermal backup, and hybrid. The results from the four modes used to dry 2.5 kg of EFB were summarized and compared. The results indicated that the solar drying mode required around 52 to 80 hours to dry the EFB, while the open sun drying mode required 100 hours. Usage of the thermal backup as heat source reduced the drying time to 48–56 hours. With the hybrid mode, the drying time was considerably reduced to 24–32 hours. The results demonstrate that the combined solar and thermal backup effectively enhanced the drying performance. The application of a solar dryer with a biomass burner is practical for massive production of solid fuels from EFB.

  19. Comparative analysis of RISAT-1 and simulated RADARSAT-2 hybrid polarimetric SAR data for different land features

    OpenAIRE

    Kumar, V; S Rao, Y.

    2014-01-01

    The purpose of this study is to compare the performance of first hybrid polarimetric spaceborne satellite RISAT-1 data and simulated hybrid polarimetric data from quad-pol RADARSAT-2 data for different land use land cover (LULC) classes. The present study compares Stokes (g0, g1, g2 and g3) and its decomposed parameters (m, chi, delta and CPR) for satellite data acquired from RISAT- 1 and RADARSAT-2 over Vijayawada, Andhra Pradesh, India. Further, backscattering coefficients are also...

  20. Paediatric adenoidectomy: endoscopic coblation technique compared to cold curettage.

    Science.gov (United States)

    Di Rienzo Businco, L; Angelone, A M; Mattei, A; Ventura, L; Lauriello, M

    2012-04-01

    The aim of our study was to assess the efficacy and safety of endoscopic coblator adenoidectomy compared to cold curettage in paediatric patients. Forty homogeneous children (4-16 years of age) with adenoid hypertrophy were divided in 2 groups to receive adenoidectomy using cold curettage (A) or coblator (B). After surgery the following outcomes were evaluated: pain score on first day, days reporting pain, analgesic days, liquid diet days, absent from school days, pain score, days with nausea, days with fever, endoscopic adenoid grade and intraoperative bleeding. Forty days after surgery, basal rhinomanometry and nasal decongestion test were measured. The coblation group reported significantly less pain on the first post-operative day, days reporting pain, analgesic days, liquid diet days and absent school days. Patients in group A showed a higher grade of adenoid persistence by rhinoendoscopy, with high values of nasal resistances at the rhinomanometry even after nasal decongestion, consistent with greater adenoid persistence after cold curettage causing air flow obstruction even after turbinate decongestion. Intra-operative bleeding during coblation was significantly less compared the group undergoing cold curettage. Coblator treatment significantly improved patient recovery compared to curettage. Endoscopic coblation adenoidectomy ensures complete removal of adenoids and reduces postoperative adenoid grade. It can also be considered safer because it is under endoscopic control and can reach the cranial portion of the adenoid and its intranasal extension.

  1. Manure management and greenhouse gas mitigation techniques : a comparative analysis

    Energy Technology Data Exchange (ETDEWEB)

    Langmead, C.

    2003-09-03

    Alberta is the second largest agricultural producer in Canada, ranking just behind Ontario. Approximately 62 per cent of the province's farm cash receipts are attributable to the livestock industry. Farmers today maintain large numbers of a single animal type. The drivers for more advanced manure management systems include: the trend towards confined feeding operations (CFO) is creating large, concentrated quantities of manure; public perception of CFO; implementation of provincial legislation regulating the expansion and construction of CFO; ratification of the Kyoto Protocol raised interest in the development of improved manure management systems capable of reducing greenhouse gas (GHG) emissions; and rising energy costs. The highest methane emissions factors are found with liquid manure management systems. They contribute more than 80 per cent of the total methane emissions from livestock manure in Alberta. The author identified and analyzed three manure management techniques to mitigate GHG emissions. They were: bio-digesters, gasification systems, and composting. Three recommendations were made to establish a strategy to support emissions offsets and maximize the reduction of methane emissions from the livestock industry. The implementation of bio-digesters, especially for the swine industry, was recommended. It was suggested that a gasification pilot project for poultry manure should be pursued by Climate Change Central. Public outreach programs promoting composting of cattle manure for beef feedlots and older style dairy barns should also be established. 19 refs., 11 tabs., 3 figs.

  2. Causal-comparative study analyzing student success in hybrid anatomy and physiology courses

    Science.gov (United States)

    Levy, Jacqueline Anita

    In the biological sciences, higher student success levels are achieved in traditionally formatted, face-to-face coursework than in hybrid courses. The methodologies used to combine hybrid and in-person elements to the course need to be applied to the biological sciences to emulate the success seen in the traditional courses since the number of hybrid course offerings at community colleges are rapidly increasing. Research has delineated that creating online collaborative communities and increasing student engagement all function to increase student successful outcomes. This causal-comparative study was conducted using student data from four sections of hybrid, introductory anatomy and physiology courses over the 2011 and 2012 calendar years. The study included two sources of data: unit exam scores and student surveys. Analysis of the unit exam scores determined that there were statistically significant differences in student success and achievement by the implementation of the following web-enhanced technologies: a) discussion boards, b) Breeze, and c) Wiki tools. In the scope of this study, student success and achievement was defined as a student earning a C (70%) or higher at the completion of the course. There were a total of 29 surveys conducted per each unit during the 2012 semesters that related to the web-enhanced technologies implemented into the course: Discussion boards, BreezeRTM, and Wiki tools. Demographic data was also compiled on all of the students enrolled in the classes during this study to demonstrate that there is no specified niche or trend seen in the students enrolling for this particular course. Unit 1 was used as a baseline to compare the students from the two years. It was determined that the students were not significantly different in aptitude levels at the beginning of the courses based on their Unit 1 exam scores. Inferential statistical analysis was done to examine student success and achievement using the following tools: t-test of

  3. Quantitative analysis of cadmium selenide nanocrystal concentration by comparative techniques.

    Science.gov (United States)

    Kuçur, Erol; Boldt, Frank M; Cavaliere-Jaricot, Sara; Ziegler, Jan; Nann, Thomas

    2007-12-01

    In this paper, we compared atomic absorption spectroscopy (AAS), anodic stripping voltammetry (ASV), and UV-vis spectroscopy for the determination of the concentration of CdSe nanocrystal (NC) solutions. The experimental results were combined with crystallographic calculations of the NC size, which led to a very accurate determination of the nanocrystal concentration--a crucial parameter for bioanalytical applications. Furthermore, such a combined approach can be extended to the determination of shell thickness of core/shell materials (e.g., CdSe/ZnS).

  4. Diagnostic accuracy: theoretical models for preimplantation genetic testing of a single nucleus using the fluorescence in situ hybridization technique

    NARCIS (Netherlands)

    P.N. Scriven; P.M.M. Bossuyt

    2010-01-01

    The aim of this study was to develop and use theoretical models to investigate the accuracy of the fluorescence in situ hybridization (FISH) technique in testing a single nucleus from a preimplantation embryo without the complicating effect of mosaicism. Mathematical models were constructed for thre

  5. Comparative Simulation Study of Production Scheduling in the Hybrid and the Parallel Flow

    Directory of Open Access Journals (Sweden)

    Varela Maria L.R.

    2017-06-01

    Full Text Available Scheduling is one of the most important decisions in production control. An approach is proposed for supporting users to solve scheduling problems, by choosing the combination of physical manufacturing system configuration and the material handling system settings. The approach considers two alternative manufacturing scheduling configurations in a two stage product oriented manufacturing system, exploring the hybrid flow shop (HFS and the parallel flow shop (PFS environments. For illustrating the application of the proposed approach an industrial case from the automotive components industry is studied. The main aim of this research to compare results of study of production scheduling in the hybrid and the parallel flow, taking into account the makespan minimization criterion. Thus the HFS and the PFS performance is compared and analyzed, mainly in terms of the makespan, as the transportation times vary. The study shows that the performance HFS is clearly better when the work stations’ processing times are unbalanced, either in nature or as a consequence of the addition of transport times just to one of the work station processing time but loses advantage, becoming worse than the performance of the PFS configuration when the work stations’ processing times are balanced, either in nature or as a consequence of the addition of transport times added on the work stations’ processing times. This means that physical layout configurations along with the way transport time are including the work stations’ processing times should be carefully taken into consideration due to its influence on the performance reached by both HFS and PFS configurations.

  6. Streptococcus thermophilus core genome: comparative genome hybridization study of 47 strains.

    Science.gov (United States)

    Rasmussen, Thomas Bovbjerg; Danielsen, Morten; Valina, Ondrej; Garrigues, Christel; Johansen, Eric; Pedersen, Martin Bastian

    2008-08-01

    A DNA microarray platform based on 2,200 genes from publicly available sequences was designed for Streptococcus thermophilus. We determined how single-nucleotide polymorphisms in the 65- to 75-mer oligonucleotide probe sequences affect the hybridization signals. The microarrays were then used for comparative genome hybridization (CGH) of 47 dairy S. thermophilus strains. An analysis of the exopolysaccharide genes in each strain confirmed previous findings that this class of genes is indeed highly variable. A phylogenetic tree based on the CGH data showed similar distances for most strains, indicating frequent recombination or gene transfer within S. thermophilus. By comparing genome sizes estimated from the microarrays and pulsed-field gel electrophoresis, the amount of unknown DNA in each strain was estimated. A core genome comprised of 1,271 genes detected in all 47 strains was identified. Likewise, a set of noncore genes detected in only some strains was identified. The concept of an industrial core genome is proposed. This is comprised of the genes in the core genome plus genes that are necessary in an applied industrial context.

  7. Characterization of Deletions of the HBA and HBB Loci by Array Comparative Genomic Hybridization

    Science.gov (United States)

    Sabath, Daniel E.; Bender, Michael A.; Sankaran, Vijay G.; Vamos, Esther; Kentsis, Alex; Yi, Hye-Son; Greisman, Harvey A.

    2017-01-01

    Thalassemia is among the most common genetic diseases worldwide. α-Thalassemia is usually caused by deletion of one or more of the duplicated HBA genes on chromosome 16. In contrast, most β-thalassemia results from point mutations that decrease or eliminate expression of the HBB gene on chromosome 11. Deletions within the HBB locus result in thalassemia or hereditary persistence of fetal Hb. Although routine diagnostic testing cannot distinguish thalassemia deletions from point mutations, deletional hereditary persistence of fetal Hb is notable for having an elevated HbF level with a normal mean corpuscular volume. A small number of deletions accounts for most α-thalassemias; in contrast, there are no predominant HBB deletions causing β-thalassemia. To facilitate the identification and characterization of deletions of the HBA and HBB globin loci, we performed array-based comparative genomic hybridization using a custom oligonucleotide microarray. We accurately mapped the breakpoints of known and previously uncharacterized HBB deletions defining previously uncharacterized deletion breakpoints by PCR amplification and sequencing. The array also successfully identified the common HBA deletions --SEA and --FIL. In summary, comparative genomic hybridization can be used to characterize deletions of the HBA and HBB loci, allowing high-resolution characterization of novel deletions that are not readily detected by PCR-based methods. PMID:26612711

  8. Comparative study of fuel cell, battery and hybrid buses for renewable energy constrained areas

    Science.gov (United States)

    Stempien, J. P.; Chan, S. H.

    2017-02-01

    Fuel cell- and battery-based public bus technologies are reviewed and compared for application in tropical urban areas. This paper scrutinizes the reported literature on fuel cell bus, fuel cell electric bus, battery electric bus, hybrid electric bus, internal combustion diesel bus and compressed natural gas bus. The comparison includes the capital and operating costs, fuel consumption and fuel cycle emissions. To the best of authors knowledge, this is the first study to holistically compare hydrogen and battery powered buses, which is the original contribution of this paper. Moreover, this is the first study to focus on supplying hydrogen and electricity from fossil resources, while including the associated emissions. The study shows that compressed natural gas and hybrid electric buses appear to be the cheapest options in terms of total cost of ownership, but they are unable to meet the EURO VI emissions' standard requirement. Only fuel cell based buses have the potential to achieve the emissions' standard when the fuel cycle based on fossil energy was considered. Fuel cell electric buses are identified as a technology allowing for the largest CO2 emission reduction, making ∼61% decrease in annual emissions possible.

  9. [Attention deficit hyperactivity disorder analyzed with array comparative genome hybridization method. Case report].

    Science.gov (United States)

    Duga, Balázs; Czakó, Márta; Komlósi, Katalin; Hadzsiev, Kinga; Sümegi, Katalin; Kisfali, Péter; Melegh, Márton; Melegh, Béla

    2014-10-05

    One of the most common psychiatric disorders during childhood is attention deficit hyperactivity disorder, which affects 5-6% of children worldwide. Symptoms include attention deficit, hyperactivity, forgetfulness and weak impulse control. The exact mechanism behind the development of the disease is unknown. However, current data suggest that a strong genetic background is responsible, which explains the frequent occurrence within a family. Literature data show that copy number variations are very common in patients with attention deficit hyperactivity disorder. The authors present a patient with attention deficit hyperactivity disorder who proved to have two approximately 400 kb heterozygous microduplications at 6p25.2 and 15q13.3 chromosomal regions detected by comparative genomic hybridization methods. Both duplications affect genes (6p25.2: SLC22A23; 15q13.3: CHRNA7) which may play a role in the development of attention deficit hyperactivity disorder. This case serves as an example of the wide spectrum of indication of the array comparative genome hybridization method.

  10. Efficient high-resolution deletion discovery in Caenorhabditis elegans by array comparative genomic hybridization

    Science.gov (United States)

    Maydan, Jason S.; Flibotte, Stephane; Edgley, Mark L.; Lau, Joanne; Selzer, Rebecca R.; Richmond, Todd A.; Pofahl, Nathan J.; Thomas, James H.; Moerman, Donald G.

    2007-01-01

    We have developed array Comparative Genomic Hybridization for Caenorhabditis elegans as a means of screening for novel induced deletions in this organism. We designed three microarrays consisting of overlapping 50-mer probes to annotated exons and micro-RNAs, the first with probes to chromosomes X and II, the second with probes to chromosome II alone, and a third to the entire genome. These arrays were used to reliably detect both a large (50 kb) multigene deletion and a small (1 kb) single-gene deletion in homozygous and heterozygous samples. In one case, a deletion breakpoint was resolved to fewer than 50 bp. In an experiment designed to identify new mutations we used the X:II and II arrays to detect deletions associated with lethal mutants on chromosome II. One is an 8-kb deletion targeting the ast-1 gene on chromosome II and another is a 141-bp deletion in the gene C06A8.1. Others span large sections of the chromosome, up to >750 kb. As a further application of array Comparative Genomic Hybridization in C. elegans we used the whole-genome array to detect the extensive natural gene content variation (almost 2%) between the N2 Bristol strain and the strain CB4856, a strain isolated in Hawaii and JU258, a strain isolated in Madeira. PMID:17267812

  11. Enhancement of the mechanical properties of an aluminum metal matrix nanocomposite by the hybridization technique

    Directory of Open Access Journals (Sweden)

    Kalidindi Sita Rama Raju

    2016-07-01

    Full Text Available A uniform distribution of nanoparticles in the matrix plays a prominent role in improving the composite strength. In the present investigation, two types of launching vehicles, such as aluminum powder (primary and CNTs (secondary, are considered to uniformly carry and launch ultra-fine nanoparticles (13 nm into molten metal. The use of a secondary launching vehicle is identified to promote strengthening compared to a regular primary vehicle, as indicated by the good distribution observed from electron micrographs. CNTs are responsible for hybridizing the composite and also assist strengthening by anchoring to the matrix through the destroyed outer-walls and their axial orientation with the matrix. These results help us in attaining a strength of 197 MPa and a hardness of 93 BHN, with a minimal loss in ductility for the H-3 sample.

  12. Wind Power Forecasting techniques in complex terrain: ANN vs. ANN-CFD hybrid approach

    Science.gov (United States)

    Castellani, Francesco; Astolfi, Davide; Mana, Matteo; Burlando, Massimiliano; Meißner, Cathérine; Piccioni, Emanuele

    2016-09-01

    Due to technology developments, renewable energies are becoming competitive against fossil sources and the number of wind farms is growing, which have to be integrated into power grids. Therefore, accurate power forecast is needed and often operators are charged with penalties in case of imbalance. Yet, wind is a stochastic and very local phenomenon, and therefore hard to predict. It has a high variability in space and time and wind power forecast is challenging. Statistical methods, as Artificial Neural Networks (ANN), are often employed for power forecasting, but they have some shortcomings: they require data sets over several years and are not able to capture tails of wind power distributions. In this work a pure ANN power forecast is compared against a hybrid method, based on the combination of ANN and a physical method using computational fluid dynamics (CFD). The validation case is a wind farm sited in southern Italy in a very complex terrain, with a wide spread turbine layout.

  13. Comparative evaluation of surface and downhole steam-generation techniques

    Science.gov (United States)

    Hart, C.

    The application of heat to reservoirs containing high API gravity oils can substantially improve recovery. Although steam injection is currently the principal thermal recovery method, heat transmission losses associated with delivery of the steam from the surface generators to the oil bearing formation has limited conventional steam injection to shallow reservoirs. The objective of the Department of Energy's Project DEEP STEAM is to develop the technology required to economically produce heavy oil from deep reservoirs. The tasks included in this effort are the development and evaluation of thermally efficient delivery systems and downhole steam generation systems. The technical and economic performance of conventional surface steam drives, which are strongly influenced by heat losses are compared. The selection of a preferred technology based upon either total efficiency or cost is found to be strongly influenced by reservoir depth, steam mass flow rate, and sandface steam quality.

  14. The “excluding” suture technique for surgical closure of ventricular septal defects: A retrospective study comparing the standard technique

    Directory of Open Access Journals (Sweden)

    Roy Varghese

    2016-01-01

    Conclusion: Surgical closure of VSDs can be accomplished by placing sutures along the margins or away with comparable results. The incidence of CHB, however, seems to be less when the “excluding” technique is employed.

  15. Development and validation of a hybrid simulation technique for cone beam CT: application to an oral imaging system

    Science.gov (United States)

    Zhang, G.; Pauwels, R.; Marshall, N.; Shaheen, E.; Nuyts, J.; Jacobs, R.; Bosmans, H.

    2011-09-01

    This paper proposes a hybrid technique to simulate the complete chain of an oral cone beam computed tomography (CBCT) system for the study of both radiation dose and image quality. The model was developed around a 3D Accuitomo 170 unit (J Morita, Japan) with a tube potential range of 60-90 kV. The Monte Carlo technique was adopted to simulate the x-ray generation, filtration and collimation. Exact dimensions of the bow-tie filter were estimated iteratively using experimentally acquired flood images. Non-flat radiation fields for different exposure settings were mediated via 'phase spaces'. Primary projection images were obtained by ray tracing at discrete energies and were fused according to the two-dimensional energy modulation templates derived from the phase space. Coarse Monte Carlo simulations were performed for scatter projections and the resulting noisy images were smoothed by Richardson-Lucy fitting. Resolution and noise characteristics of the flat panel detector were included using the measured modulation transfer function (MTF) and the noise power spectrum (NPS), respectively. The Monte Carlo dose calculation was calibrated in terms of kerma free-in-air about the isocenter, using an ionization chamber, and was subsequently validated by comparison against the measured air kerma in water at various positions of a cylindrical water phantom. The resulting dose discrepancies were found <10% for most cases. Intensity profiles of the experimentally acquired and simulated projection images of the water phantom showed comparable fractional increase over the common area as changing from a small to a large field of view, suggesting that the scatter was accurately accounted. Image validation was conducted using two small phantoms and the built-in quality assurance protocol of the system. The reconstructed simulated images showed high resemblance on contrast resolution, noise appearance and artifact pattern in comparison to experimentally acquired images, with <5

  16. Identification and characterization of a de novo partial trisomy 10p by comparative genomic hybridization (CGH).

    Science.gov (United States)

    Benzacken, B; Lapierre, J M; Siffroi, J P; Chalvon, A; Tachdjian, G

    1998-10-01

    We report the characterization of a de novo unbalanced chromosome rearrangement by comparative genomic hybridization (CGH) in a 15-day-old child with hypotonia and dysmorphia. We describe the combined use of CGH and fluorescence in situ hybridization (FISH) to identify the origin of the additional chromosomal material on the short arm of chromosome 6. Investigation with FISH revealed that the excess material was not derived from chromosome 6. Identification of unknown unbalanced aberrations that could not be identified by traditional cytogenetics procedures is possible by CGH analysis. Visual analysis of digital images from CGH-metaphase spreads revealed a predominantly green signal on the telomeric region of chromosome 10p. After quantitative digital ratio imaging of 10 CGH-metaphase spreads, a region of gain was found in the chromosome band 10p14-pter. The CGH finding was confirmed by FISH analysis, using a whole chromosome 10 paint probe. These results show the usefulness of CGH for a rapid characterization of de novo unbalanced translocation, unidentifiable by karyotype alone.

  17. Borders and comparative cytoarchitecture of the perirhinal and postrhinal cortices in an F1 hybrid mouse.

    Science.gov (United States)

    Beaudin, Stephane A; Singh, Teghpal; Agster, Kara L; Burwell, Rebecca D

    2013-02-01

    We examined the cytoarchitectonic and chemoarchitectonic organization of the cortical regions associated with the posterior rhinal fissure in the mouse brain, within the framework of what is known about these regions in the rat. Primary observations were in a first-generation hybrid mouse line, B6129PF/J1. The F1 hybrid was chosen because of the many advantages afforded in the study of the molecular and cellular bases of learning and memory. Comparisons with the parent strains, the C57BL6/J and 129P3/J are also reported. Mouse brain tissue was processed for visualization of Nissl material, myelin, acetyl cholinesterase, parvalbumin, and heavy metals. Tissue stained for heavy metals by the Timm's method was particularly useful in the assignment of borders and in the comparative analyses because the patterns of staining were similar across species and strains. As in the rat, the areas examined were parcellated into 2 regions, the perirhinal and the postrhinal cortices. The perirhinal cortex was divided into areas 35 and 36, and the postrhinal cortex was divided into dorsal (PORd) and ventral (PORv) subregions. In addition to identifying the borders of the perirhinal cortex, we were able to identify a region in the mouse brain that shares signature features with the rat postrhinal cortex.

  18. Analysis of Chinese women with primary ovarian insufficiency by high resolution array-comparative genomic hybridization

    Institute of Scientific and Technical Information of China (English)

    LIAO Can; FU Fang; YANG Xin; SUN Yi-min; LI Dong-zhi

    2011-01-01

    Background Primary ovarian insufficiency (POI) is defined as a primary ovarian defect characterized by absent menarche (primary amenorrhea) or premature depletion of ovarian follicles before the age of 40 years. The etiology of primary ovarian insufficiency in human female patients is still unclear. The purpose of this study is to investigate the potential genetic causes in primary amenorrhea patients by high resolution array based comparative genomic hybridization (array-CGH) analysis.Methods Following the standard karyotyping analysis, genomic DNA from whole blood of 15 primary amenorrhea patients and 15 normal control women was hybridized with Affymetrix cytogenetic 2.7M arrays following the standard protocol. Copy number variations identified by array-CGH were confirmed by real time polymerase chain reaction.Results All the 30 samples were negative by conventional karyotyping analysis. Microdeletions on chromosome 17q21.31-q21.32 with approximately 1.3 Mb were identified in four patients by high resolution array-CGH analysis. This included the female reproductive secretory pathway related factor N-ethylmaleimide-sensitive factor (NSF) gene.Conclusions The results of the present study suggest that there may be critical regions regulating primary ovarian insufficiency in women with a 17q21.31-q21.32 microdeletion. This effect might be due to the loss of function of the NSF gene/genes within the deleted region or to effects on contiguous genes.

  19. Identification of cryptic microaberrations in osteosarcoma by high-definition oligonucleotide array comparative genomic hybridization.

    Science.gov (United States)

    Selvarajah, Shamini; Yoshimoto, Maisa; Maire, Georges; Paderova, Jana; Bayani, Jane; Squire, Jeremy A; Zielenska, Maria

    2007-11-01

    Osteosarcoma (OS) is an aggressive bone tumor characterized by complex abnormal karyotypes and a high level of genomic instability. Using high-resolution array comparative genomic hybridization (aCGH), a novel class of localized copy number variations called microaberrations has been detected. These genomic anomalies typically involve DNA imbalances affecting 700 kb to 1 Mb DNA, and are often associated with some type of genetic syndromes. Because the origin of instability in OS is poorly understood, we used aCGH to determine whether microaberrations were a characteristic of four OS cell lines: U-2 OS, HOS, MG-63, and SAOS-2. TP53 is mutated in SAOS-2, a line in which 17 microaberrations were found. In contrast, U-2 OS, which has a wild-type TP53, had only six such anomalies, the lowest incidence. A 500-kb microaberration within a region of gain at 5p15.33 in SAOS-2 was confirmed by fluorescence in situ hybridization. Significantly, this genomic location is close to the TERT gene, a region of gain in all four cell lines. To our knowledge, this is the first systematic analysis of the incidence of microaberrations in OS. The high levels of these anomalies detected suggest that the instability processes in OS that lead to a highly abnormal karyotypes may also be associated with acquisition of genomic microaberrations.

  20. Insertional translocation detected using FISH confirmation of array-comparative genomic hybridization (aCGH) results.

    Science.gov (United States)

    Kang, Sung-Hae L; Shaw, Chad; Ou, Zhishuo; Eng, Patricia A; Cooper, M Lance; Pursley, Amber N; Sahoo, Trilochan; Bacino, Carlos A; Chinault, A Craig; Stankiewicz, Pawel; Patel, Ankita; Lupski, James R; Cheung, Sau Wai

    2010-05-01

    Insertional translocations (ITs) are rare events that require at least three breaks in the chromosomes involved and thus qualify as complex chromosomal rearrangements (CCR). In the current study, we identified 40 ITs from approximately 18,000 clinical cases (1:500) using array-comparative genomic hybridization (aCGH) in conjunction with fluorescence in situ hybridization (FISH) confirmation of the aCGH findings, and parental follow-up studies. Both submicroscopic and microscopically visible IT events were detected. They were divided into three major categories: (1) simple intrachromosomal and interchromosomal IT resulting in pure segmental trisomy, (2) complex IT involving more than one abnormality, (3) deletion inherited from a parent with a balanced IT resulting in pure segmental monosomy. Of the cases in which follow-up parental studies were available, over half showed inheritance from an apparently unaffected parent carrying the same unbalanced rearrangement detected in the propositi, thus decreasing the likelihood that these IT events are clinically relevant. Nevertheless, we identified six cases in which small submicroscopic events were detected involving known disease-associated genes/genomic segments and are likely to be pathogenic. We recommend that copy number gains detected by clinical aCGH analysis should be confirmed using FISH analysis whenever possible in order to determine the physical location of the duplicated segment. We hypothesize that the increased use of aCGH in the clinic will demonstrate that IT occurs more frequently than previously considered but can identify genomic rearrangements with unclear clinical significance.

  1. Prediction of daily rainfall by a hybrid wavelet-season-neuro technique

    Science.gov (United States)

    Altunkaynak, Abdusselam; Nigussie, Tewodros Assefa

    2015-10-01

    Accurate daily rainfall prediction is required for accurate streamflow prediction, flooding risk analysis, constructing a reliable flood control and early warning system. However, because of its nonlinearity, prediction of daily rainfall with high accuracy and long prediction lead time is difficult. There are many daily rainfall prediction methods in the literature, but they are known to yield inaccurate predictions with short lead time, require many physical parameters and involve complicated mathematical equations with huge computational burden. Recently, artificial neural network has been used for predicting rainfall with the objective of addressing the above mentioned problems. But still, the accuracy has not been satisfactory and predictions are with short lead time. In this study, two methods called combined season-multilayer perceptron (SAS-MP) and hybrid wavelet-season-multilayer perceptron (W-SAS-MP) were developed to enhance prediction accuracy and extend prediction lead time of daily rainfall up to 5 days by using data from two stations in Turkey. These two models were compared with the stand-alone multilayer perceptron and another most commonly used method called combined wavelet-multilayer perceptron (W-MP). The performances of the models were evaluated by using coefficient of determination, coefficient of efficiency and root mean squared error. The SAS-MP model was found to be better than W-MP in most cases, except lead time day 1, where W-MP performed better. Throughout all the lead times, however, the hybrid W-SAS-MP model performed best with CE values of 0.911 and 0.909, respectively, for prediction lead time of 1 day and 0.588 and 0.570, respectively, for prediction lead time of 5 days at Stations 17836 and 17837, respectively, at the model testing (validation) phase. Therefore, W-SAS-MP can be an appropriate tool for enhancing daily rainfall prediction accuracy and extend prediction lead time.

  2. COMPARATIVE STUDY OF HYBRIDS OF THE FIRST AND SECOND GENERATIONS OF DURUM WINTER WHEAT OF VARIOUS CROSS-BREEDING

    Directory of Open Access Journals (Sweden)

    Samofalova N. E.

    2015-12-01

    Full Text Available The article substantiates a necessity to apply the method of interspecific hybridization in durum winter wheat breeding, using the present soft winter varieties for improvement of frost and drought tolerance at the beginning of germination; resistance to snow mold, fusariosis and bacteriosis of ears and grain. The article presents the results of a comparative study of different types of crossbreeding at interspecific and intraspecific hybridization due to germination, emergence, productivity. It has been shown that intraspecific hybrids ‘T. durum оз. х T. durum оз.’, interspecific hybrids ‘T. durum оз. х Т. аestivum оз’ and ‘Т. аestivum оз. х T. durum оз.’ possessed the highest germination and emergence with 71,8/75,3% for direct and 60,4/82,5% for backward, 42,8 and 35,5% and 55,4 and 64,1% respectively. In backward (triplecross cross-breeding of F1 interspecific hybrids with durum winter wheat the grain germination was down to 37,4 and 36,6%, but the emergence was up to 64,1 and 69,7% and reached the level of intraspecific hybrids. According to the elements of ear (head productivity (grain mass per head, number of seeds per head, interspecific double-cross hybrids of the first and the second generation significantly conceded to intraspecific hybrids, but they matched them in a number of spikelets and grain size. The triple-cross hybrids exceed the double interspecific hybrids in this respect, but they concede to double-cross and triple-cross intraspecific hybrids. We studied the principle of splitting of interspecific hybrids of the second generation ‘T. durum оз. х Т. аestivum оз.’ and ‘T. durum оз. х T. durum оз.’ (direct and backward and the triple-cross hybrids obtained from cross-breeding of interspecific and intraspecific double-cross hybrids F1 with durum winter wheat

  3. Optimization of RF power absorption by optimization techniques using the lower hybrid current drive of FTU

    Energy Technology Data Exchange (ETDEWEB)

    Centioli, C. [Associazione Euratom/ENEA Sulla Fusione, Centro Ricerche Frascati, Via E. Fermi 45, CP 65, 00044 Frascati, Rome (Italy); Iannone, F. [Associazione Euratom/ENEA Sulla Fusione, Centro Ricerche Frascati, Via E. Fermi 45, CP 65, 00044 Frascati, Rome (Italy); Mazza, G. [Associazione Euratom/ENEA Sulla Fusione, Centro Ricerche Frascati, Via E. Fermi 45, CP 65, 00044 Frascati, Rome (Italy); Panella, M. [Associazione Euratom/ENEA Sulla Fusione, Centro Ricerche Frascati, Via E. Fermi 45, CP 65, 00044 Frascati, Rome (Italy); Pangione, L. [Dipartimento di Informatica, Sistemi e Produzione, Universita di Roma, Tor Vergata, Via del Politecnico 1, 00133 Rome (Italy)]. E-mail: pangione@frascati.enea.it; Podda, S. [Associazione Euratom/ENEA Sulla Fusione, Centro Ricerche Frascati, Via E. Fermi 45, CP 65, 00044 Frascati, Rome (Italy); Tuccillo, A. [Associazione Euratom/ENEA Sulla Fusione, Centro Ricerche Frascati, Via E. Fermi 45, CP 65, 00044 Frascati, Rome (Italy); Vitale, V. [Associazione Euratom/ENEA Sulla Fusione, Centro Ricerche Frascati, Via E. Fermi 45, CP 65, 00044 Frascati, Rome (Italy); Zaccarian, L. [Dipartimento di Informatica, Sistemi e Produzione, Universita di Roma, Tor Vergata, Via del Politecnico 1, 00133 Rome (Italy)

    2005-11-15

    In this paper, we will report on the experimental results arising from the implementation of optimization techniques to maximize the RF power coupling versus the plasma conditions in the FTU experimental facility. These experiments are carried out by employing the open-source Linux-RTAI control system currently running on the FTU digital feedback loop. The RF power source under consideration is a lower hybrid system (LH) based on six gyrotrons with a nominal power output capability of 1.1 MW each. The optimization of the coupling level between the plasma and the emitting antenna reduces the reflected power, thus maximizing the heating effects in addition to avoiding danger to the emitter (equivalently, annoying safety shutdowns of the system). To this aim, the plasma displacement is modified by suitably adjusting the reference input to the stabilizing feedback, according to a steepest descent algorithm. It will be shown in the paper how this algorithm achieves a satisfactory level of robustness with respect to measurement errors and well performs both in simulation and in experimental tests, thus leading to an improved effectiveness of the RF heating system.

  4. Hybrid LS-LMMSE Channel Estimation Technique for LTE Downlink Systems

    CERN Document Server

    Khlifi, Abdelhakim; 10.5121/ijngn.2011.3401

    2012-01-01

    In this paper, we propose to improve the performance of the channel estimation for LTE Downlink systems under the effect of the channel length. As LTE Downlink system is a MIMO-OFDMA based system, a cyclic prefix (CP) is inserted at the beginning of each transmitted OFDM symbol in order to mitigate both inter-carrier interference (ICI) and inter-symbol interference (ISI). The inserted CP is usually equal to or longer than the channel length. However, the cyclic prefix can be shorter because of some unforeseen channel behaviour. Previous works have shown that in the case where the cyclic prefix is equal to or longer than the channel length, LMMSE performs better than LSE but at the cost of computational complexity .In the other case, LMMSE performs also better than LS only for low SNR values. However, LS shows better performance for LTE Downlink systems for high SNR values. Therefore, we propose a hybrid LS-LMMSE channel estimation technique robust to the channel length effect. MATLAB Monte-Carlo simulations a...

  5. Power Management Based Current Control Technique for Photovoltaic-Battery Assisted Wind-Hydro Hybrid System

    Science.gov (United States)

    Ram Prabhakar, J.; Ragavan, K.

    2013-07-01

    This article proposes new power management based current control strategy for integrated wind-solar-hydro system equipped with battery storage mechanism. In this control technique, an indirect estimation of load current is done, through energy balance model, DC-link voltage control and droop control. This system features simpler energy management strategy and necessitates few power electronic converters, thereby minimizing the cost of the system. The generation-demand (G-D) management diagram is formulated based on the stochastic weather conditions and demand, which would likely moderate the gap between both. The features of management strategy deploying energy balance model include (1) regulating DC-link voltage within specified tolerances, (2) isolated operation without relying on external electric power transmission network, (3) indirect current control of hydro turbine driven induction generator and (4) seamless transition between grid-connected and off-grid operation modes. Furthermore, structuring of the hybrid system with appropriate selection of control variables enables power sharing among each energy conversion systems and battery storage mechanism. By addressing these intricacies, it is viable to regulate the frequency and voltage of the remote network at load end. The performance of the proposed composite scheme is demonstrated through time-domain simulation in MATLAB/Simulink environment.

  6. Cervical anterior hybrid technique with bi-level Bryan artificial disc replacement and adjacent segment fusion for cervical myelopathy over three consecutive segments.

    Science.gov (United States)

    Chen, Jiang; Xu, Lin; Jia, Yu-Song; Sun, Qi; Li, Jin-Yu; Zheng, Chen-Ying; Bai, Chun-Xiao; Yu, Qin-Sheng

    2016-05-01

    This study aimed to assess the preliminary clinical efficacy and feasibility of the hybrid technique for multilevel cervical myelopathy. Considering the many shortcomings of traditional treatment methods for multilevel cervical degenerative myelopathy, hybrid surgery (bi-level Bryan artificial disc [Medtronic Sofamor Danek, Memphis, TN, USA] replacement and anterior cervical discectomy and fusion) should be considered. Between March 2006 and November 2012, 108 patients (68 men and 40 women, average age 45years) underwent hybrid surgery. Based on the Japanese Orthopaedic Association (JOA) score, Neck Disability Index (NDI), and Odom's criteria, the clinical symptoms and neurological function before and after surgery were evaluated. Mean surgery duration was 90minutes, with average blood loss of 30mL. Mean follow-up duration was 36months. At the final follow-up, the mean JOA (± standard deviation) scores were significantly higher compared with preoperative values (15.08±1.47 versus 9.18±1.22; P<0.01); meanwhile, NDI values were markedly decreased (12.32±1.03 versus 42.68±1.83; P<0.01). Using Odom's criteria, the clinical outcomes were rated as excellent (76 patients), good (22 patients), fair (six patients), and poor (four patients). These findings indicate that the hybrid method provides an effective treatment for cervical myelopathy over three consecutive segments, ensuring a good clinical outcome. Copyright © 2015 Elsevier Ltd. All rights reserved.

  7. Comprehensive embryo analysis of advanced maternal age-related aneuploidies and mosaicism by short comparative genomic hybridization.

    Science.gov (United States)

    Rius, Mariona; Daina, Gemma; Obradors, Albert; Ramos, Laia; Velilla, Esther; Fernández, Sílvia; Martínez-Passarell, Olga; Benet, Jordi; Navarro, Joaquima

    2011-01-01

    The short comparative genomic hybridization (short-CGH) method was used to perform a comprehensive cytogenetic study of isolated blastomeres from advanced maternal age embryos, discarded after fluorescent in situ hybridization (FISH) preimplantation genetic screening (PGS), detecting aneuploidies (38.5% of which corresponded to chromosomes not screened by 9-chromosome FISH), structural aberrations (31.8%), and mosaicism (77.3%). The short-CGH method was subsequently applied in one PGS, achieving a twin pregnancy.

  8. A Comparative Analysis for Hybrid Routing Protocol for Wireless Sensor Networks

    Directory of Open Access Journals (Sweden)

    Ms. Manisha M. Magdum

    2015-04-01

    Full Text Available Wireless Sensor Networks (WSNs consist of smallnodes with sensing, computation and wireless communicationscapabilities. These sensor networks interconnect a several othernodes when established in large and this opens up severaltechnical challenges and immense application possibilities.These wireless sensor networks communicate using multi-hopwireless communications, regular ad hoc routing techniquescannot be directly applied to sensor networks domain due tothe limited processing power and the finite power available toeach sensor nodes hence recent advances in wireless sensornetworks have developed many protocols depending on theapplication and network architecture and are specificallydesigned for sensor networks where energy awareness is anessential consideration. This paper presents routingprotocols for sensor networks and compares the routingprotocols that are presently of increasing importance. In this paper, we propose Hybrid Routing Protocol whichcombines the merits of proactive and reactive approach andovercome their demerits.

  9. Application of Array-based Comparative Genome Hybridization in Children with Developmental Delay or Mental Retardation

    Directory of Open Access Journals (Sweden)

    Jao-Shwann Liang

    2008-12-01

    Full Text Available Children with developmental delay or mental retardation (DD/MR are commonly en countered in child neurology clinics, and establishing an etiologic diagnosis is a challenge for child neurologists. Among the etiologies, chromosomal imbalance is one of the most important causes. However, many of these chromosomal imbalances are submicroscopic and cannot be detected by conventional cytogenetic methods. Microarray-based comparative genomic hybridization (array CGH is considered to be superior in the investigation of chromosomal deletions or duplications in children with DD/MR, and has been demonstrated to improve the diagnostic detection rate for these small chromosomal abnormalities. Here, we review the recent studies of array CGH in the evaluation of patients with idiopathic DD/MR.

  10. Genomic analysis by oligonucleotide array Comparative Genomic Hybridization utilizing formalin-fixed, paraffin-embedded tissues.

    Science.gov (United States)

    Savage, Stephanie J; Hostetter, Galen

    2011-01-01

    Formalin fixation has been used to preserve tissues for more than a hundred years, and there are currently more than 300 million archival samples in the United States alone. The application of genomic protocols such as high-density oligonucleotide array Comparative Genomic Hybridization (aCGH) to formalin-fixed, paraffin-embedded (FFPE) tissues, therefore, opens an untapped resource of available tissues for research and facilitates utilization of existing clinical data in a research sample set. However, formalin fixation results in cross-linking of proteins and DNA, typically leading to such a significant degradation of DNA template that little is available for use in molecular applications. Here, we describe a protocol to circumvent formalin fixation artifact by utilizing enzymatic reactions to obtain quality DNA from a wide range of FFPE tissues for successful genome-wide discovery of gene dosage alterations in archival clinical samples.

  11. Comparative Studies on the Molecular Genetic Diversities among Haliotis discus hannai,H.discus discus and Their Hybrids

    Institute of Scientific and Technical Information of China (English)

    Wan Junfen(万俊芬); Bao Zhenmin; Zhang Quanqi; Wang Xiaolong

    2004-01-01

    The hybrid (H. discus hannai♀× H. discus discus♂) shows strong heterosis in both growth and survival rates during aquaculture. In order to better understand the genetic basis of heterosis, AFLP markers are adopted to compare the genetic diversities of the two parents and their hybrids. Six primer combinations reveal 552 loci, among which 88 loci show significant difference between the two parent populations (P<0.01). Analysis of molecular variance (AMOVA) indicates the genetic variance between them is significantly different (P<0.001). Thus there should be genetic basis of heterosis for their hybrids. In contrast to parents, more loci with lower frequency are amplified in hybrids than those in parents, whereas the loci with 0% and 100% frequency are less in hybrids than those in parents. Moreover, the genetic diversities of hybrids increase since the similarity indexes are lower and heterozygosities are higher in hybrids than those in parents. In addition, the genetic distances between reciprocal F1s and H. discus discus are both smaller than those between reciprocal F1s H. discus hannai.

  12. Comparative Analysis of Torque and Acceleration of Pre- and Post-Transmission Parallel Hybrid Drivetrains

    Directory of Open Access Journals (Sweden)

    Zulkifli Saiful A.

    2016-01-01

    Full Text Available Parallel hybrid electric vehicles (HEV can be classified according to the location of the electric motor with respect to the transmission unit for the internal combustion engine (ICE: they can be pre-transmission or posttransmission parallel hybrid. A split-axle parallel HEV – in which the ICE and electric motor provide propulsion power to different axles – is a sub-type of the post-transmission hybrid, since addition of torque and power from the two power sources occurs after the vehicle’s transmission. The term ‘through-the-road’ (TTR hybrid is also used for the split-parallel HEV, since power coupling between the ICE and electric motor is not through some mechanical device but through the vehicle itself, its wheels and the road on which it moves. The present work presents torquespeed relationship of the split-parallel hybrid and analyses simulation results of torque profiles and acceleration performance of pre-transmission and post-transmission hybrid configurations, using three different sizes of electric motor. Different operating regions of the pre-trans and post-trans motors are observed, leading to different speed and torque profiles. Although ICE average efficiency in the post-trans hybrid is slightly lower than in the pre-trans hybrid, the post-trans hybrid vehicle has better fuel economy and acceleration performance than the pre-trans hybrid vehicle.

  13. Structure and weights optimisation of a modified Elman network emotion classifier using hybrid computational intelligence algorithms: a comparative study

    Science.gov (United States)

    Sheikhan, Mansour; Abbasnezhad Arabi, Mahdi; Gharavian, Davood

    2015-10-01

    Artificial neural networks are efficient models in pattern recognition applications, but their performance is dependent on employing suitable structure and connection weights. This study used a hybrid method for obtaining the optimal weight set and architecture of a recurrent neural emotion classifier based on gravitational search algorithm (GSA) and its binary version (BGSA), respectively. By considering the features of speech signal that were related to prosody, voice quality, and spectrum, a rich feature set was constructed. To select more efficient features, a fast feature selection method was employed. The performance of the proposed hybrid GSA-BGSA method was compared with similar hybrid methods based on particle swarm optimisation (PSO) algorithm and its binary version, PSO and discrete firefly algorithm, and hybrid of error back-propagation and genetic algorithm that were used for optimisation. Experimental tests on Berlin emotional database demonstrated the superior performance of the proposed method using a lighter network structure.

  14. Degradation of Tectilon Yellow 2G by hybrid technique: combination of sonolysis and biodegradation using mutant Pseudomonas putida.

    Science.gov (United States)

    Srinivasan, Raman; Kathiravan, Mathur Nadarajan; Gopinath, Kannappan Panchamoorthy

    2011-02-01

    Degradation of Tectilon Yellow 2G (TY2G), an azo dye has been studied by hybrid technique involving pretreatment by sonochemical method and further biological treatment by Pseudomonas putida mutant. Pretreatment experiments were carried out by sonolysis of the dye solution at different concentrations (100-1000 mg/L). Wild type Gram-negative P. putida species isolated from the textile effluent contaminated soil, which was found to be effective towards dye degradation, has been acclimatized so as to consume TY2G as the sole source of nutrition. Mutant strain was obtained from the acclimatized species by random mutagenesis using the chemical mutagen ethidium bromide for various time intervals (6-30 min). The optimum mutagenesis exposure time for obtaining the most efficient species for dye degradation was found to be 18 min. An efficient mutant strain P. putida ACT 1 has been isolated and was used for growth experiments. The mutant strain showed a better growth compared to the wild strain. The substrate utilization kinetics has been modeled using Monod and Haldane model equations of which the Haldane model provided a better fit. The enzyme kinetics of the mutant and wild species was obtained using Michaelis-Menten equation. The mutated species showed better enzyme kinetics towards the degradation of TY2G.

  15. A hybrid conformal planning technique with solitary dynamic portal for postmastectomy radiotherapy with regional nodes

    Directory of Open Access Journals (Sweden)

    K Mohamathu Rafic

    2017-01-01

    Full Text Available Purpose: This study focuses on incorporation of a solitary dynamic portal (SDP in conformal planning for postmastectomy radiotherapy (PMRT with nodal regions with an intention to overcome the treatment planning limitations imposed by conventional techniques. Materials and Methods: Twenty-four patients who underwent surgical mastectomy followed by PMRT were included in this study. Initially, a treatment plan comprising tangential beams fitted to beam's-eye-view (BEV of chest wall (CW and a direct anterior field fitted to BEV of nodal region, both sharing a single isocenter was generated using Eclipse treatment planning system. Multiple field-in-fields with optimum beam weights (5% per field were added primarily from the medial tangent, fitted to BEV of entire target volume, and finally converted into a dynamic portal. Dosimetric analysis for the treatment plans and fluence verification for the dynamic portals were performed. Results and Discussion: Conformal plans with SDP showed excellent dose coverage (V95%>95%, higher degree of tumor dose conformity (≤1.25 and homogeneity (≤0.12 without compromising the organ at risk sparing for PMRT with nodal region. Treatment plans with SDP considerably reduced the lower isodose spread to the ipsilateral lung, heart, and healthy tissue without affecting the dose homogeneity. Further, gamma evaluation showed more than 96% pixel pass rate for standard 3%/3 mm dose difference and distance-to-agreement criteria. Moreover, this plan offers less probability of “geometrical miss” at the highly irregular CW with regional nodal radiotherapy. Conclusion: Hybrid conformal plans with SDP would facilitate improved dose distribution and reduced uncertainty in delivery and promises to be a suitable treatment option for complex postmastectomy CW with regional nodal irradiation.

  16. Prediction of monthly regional groundwater levels through hybrid soft-computing techniques

    Science.gov (United States)

    Chang, Fi-John; Chang, Li-Chiu; Huang, Chien-Wei; Kao, I.-Feng

    2016-10-01

    Groundwater systems are intrinsically heterogeneous with dynamic temporal-spatial patterns, which cause great difficulty in quantifying their complex processes, while reliable predictions of regional groundwater levels are commonly needed for managing water resources to ensure proper service of water demands within a region. In this study, we proposed a novel and flexible soft-computing technique that could effectively extract the complex high-dimensional input-output patterns of basin-wide groundwater-aquifer systems in an adaptive manner. The soft-computing models combined the Self Organized Map (SOM) and the Nonlinear Autoregressive with Exogenous Inputs (NARX) network for predicting monthly regional groundwater levels based on hydrologic forcing data. The SOM could effectively classify the temporal-spatial patterns of regional groundwater levels, the NARX could accurately predict the mean of regional groundwater levels for adjusting the selected SOM, the Kriging was used to interpolate the predictions of the adjusted SOM into finer grids of locations, and consequently the prediction of a monthly regional groundwater level map could be obtained. The Zhuoshui River basin in Taiwan was the study case, and its monthly data sets collected from 203 groundwater stations, 32 rainfall stations and 6 flow stations during 2000 and 2013 were used for modelling purpose. The results demonstrated that the hybrid SOM-NARX model could reliably and suitably predict monthly basin-wide groundwater levels with high correlations (R2 > 0.9 in both training and testing cases). The proposed methodology presents a milestone in modelling regional environmental issues and offers an insightful and promising way to predict monthly basin-wide groundwater levels, which is beneficial to authorities for sustainable water resources management.

  17. Entrapment of glucoamylase by sol-gel technique in PhTES/TEOS hybrid matrixes

    Directory of Open Access Journals (Sweden)

    B. Vlad-Oros

    2007-12-01

    Full Text Available Mesoporous silica particles were prepared by the sol-gel method from different alkoxysilane precursors and used as a host matrix for encapsulation of glucoamylase, an enzyme widely used in fermentative industry. The aim was to investigate the physico-chemical properties of the different silica powders and their effect on the enzyme kinetics. The encapsulated enzymes followed Michaelis-Menten kinetics. The Michaelis constant (KM and the maximum rate of starch hydrolysis reaction (Vmax were calculated according to the Michaelis-Menten and Lineweaver-Burke plots. The values of the Michaelis constant (KM of the encapsulated enzymes were higher than those of the free enzyme. The temperature and pH infl uence on the activity of free and immobilized glucoamylase were also compared. The results of this study show that the enzymes immobilized in organic/inorganic hybrid silica matrixes (obtained by the sol-gel method, allowing the entrapped glucoamylase to retain its biological activity, are suitable for many different applications, (medicinal, clinical, analytical.

  18. Prediction of peak ground acceleration of Iran's tectonic regions using a hybrid soft computing technique

    Directory of Open Access Journals (Sweden)

    Mostafa Gandomi

    2016-01-01

    Full Text Available A new model is derived to predict the peak ground acceleration (PGA utilizing a hybrid method coupling artificial neural network (ANN and simulated annealing (SA, called SA-ANN. The proposed model relates PGA to earthquake source to site distance, earthquake magnitude, average shear-wave velocity, faulting mechanisms, and focal depth. A database of strong ground-motion recordings of 36 earthquakes, which happened in Iran's tectonic regions, is used to establish the model. For more validity verification, the SA-ANN model is employed to predict the PGA of a part of the database beyond the training data domain. The proposed SA-ANN model is compared with the simple ANN in addition to 10 well-known models proposed in the literature. The proposed model performance is superior to the single ANN and other existing attenuation models. The SA-ANN model is highly correlated to the actual records (R = 0.835 and ρ = 0.0908 and it is subsequently converted into a tractable design equation.

  19. Fast hybrid CPU- and GPU-based CT reconstruction algorithm using air skipping technique.

    Science.gov (United States)

    Lee, Byeonghun; Lee, Ho; Shin, Yeong Gil

    2010-01-01

    This paper presents a fast hybrid CPU- and GPU-based CT reconstruction algorithm to reduce the amount of back-projection operation using air skipping involving polygon clipping. The algorithm easily and rapidly selects air areas that have significantly higher contrast in each projection image by applying K-means clustering method on CPU, and then generates boundary tables for verifying valid region using segmented air areas. Based on these boundary tables of each projection image, clipped polygon that indicates active region when back-projection operation is performed on GPU is determined on each volume slice. This polygon clipping process makes it possible to use smaller number of voxels to be back-projected, which leads to a faster GPU-based reconstruction method. This approach has been applied to a clinical data set and Shepp-Logan phantom data sets having various ratio of air region for quantitative and qualitative comparison and analysis of our and conventional GPU-based reconstruction methods. The algorithm has been proved to reduce computational time to half without losing any diagnostic information, compared to conventional GPU-based approaches.

  20. A 3D hybrid grid generation technique and a multigrid/parallel algorithm based on anisotropic agglomeration approach

    Institute of Scientific and Technical Information of China (English)

    Zhang Laiping; Zhao Zhong; Chang Xinghua; He Xin

    2013-01-01

    A hybrid grid generation technique and a multigrid/parallel algorithm are presented in this paper for turbulence flow simulations over three-dimensional (3D) complex geometries.The hybrid grid generation technique is based on an agglomeration method of anisotropic tetrahedrons.Firstly,the complex computational domain is covered by pure tetrahedral grids,in which anisotropic tetrahedrons are adopted to discrete the boundary layer and isotropic tetrahedrons in the outer field.Then,the anisotropic tetrahedrons in the boundary layer are agglomerated to generate prismatic grids.The agglomeration method can improve the grid quality in boundary layer and reduce the grid quantity to enhance the numerical accuracy and efficiency.In order to accelerate the convergence history,a multigrid/parallel algorithm is developed also based on anisotropic agglomeration approach.The numerical results demonstrate the excellent accelerating capability of this multigrid method.

  1. Improving Skill Development: An Exploratory Study Comparing a Philosophical and an Applied Ethical Analysis Technique

    Science.gov (United States)

    Al-Saggaf, Yeslam; Burmeister, Oliver K.

    2012-01-01

    This exploratory study compares and contrasts two types of critical thinking techniques; one is a philosophical and the other an applied ethical analysis technique. The two techniques analyse an ethically challenging situation involving ICT that a recent media article raised to demonstrate their ability to develop the ethical analysis skills of…

  2. Improving Skill Development: An Exploratory Study Comparing a Philosophical and an Applied Ethical Analysis Technique

    Science.gov (United States)

    Al-Saggaf, Yeslam; Burmeister, Oliver K.

    2012-01-01

    This exploratory study compares and contrasts two types of critical thinking techniques; one is a philosophical and the other an applied ethical analysis technique. The two techniques analyse an ethically challenging situation involving ICT that a recent media article raised to demonstrate their ability to develop the ethical analysis skills of…

  3. Ecophysiological Analysis of Microorganisms in Complex Microbial Systems by Combination of Fluorescence In Situ Hybridization with Extracellular Staining Techniques

    Science.gov (United States)

    Nielsen, Jeppe Lund; Kragelund, Caroline; Nielsen, Per Halkjær

    Ecophysiological analysis and functions of single cells in complex microbial systems can be examined by simple combinations of Fluorescence in situ hybridization (FISH) for identification with various staining techniques targeting functional phenotypes. In this chapter, we describe methods and protocols optimized for the study of extracellular enzymes, surface hydrophobicity and specific surface structures. Although primarily applied to the study of microbes in wastewater treatment (activated sludge and biofilms), the methods may also be used with minor modifications in several other ecosystems.

  4. Microsatellite instability typing in serum and tissue of patients with colorectal cancer: comparing real time PCR with hybridization probe and high-performance liquid chromatography.

    Science.gov (United States)

    Mokarram, P; Rismanchi, M; Alizadeh Naeeni, M; Mirab Samiee, S; Paryan, M; Alipour, A; Honardar, Z; Kavousipour, S; Naghibalhossaini, F; Mostafavi-Pour, Z; Monabati, A; Hosseni, S V; Shamsdin, S A

    2014-05-01

    Allelic variation of BAT-25 (a 25-repeat quasimonomorphic poly T) and BAT-26 (a 26-repeat quasimonomorphic polyA) loci as two mononucleotide microsatellite markers, were analyzed with high-performance liquid chromatography (HPLC) compared with Real-Time PCR using hybridization probes. BAT-26 and BAT-25 markers were used to determine an appropriate screening technique with high sensitivity and specificity to diagnose microsatellite instability (MSI) status in patients with colorectal cancer (CRC). One of the pathways in colorectal tumor genesis is microsatellite instability (MSI+). MSI is detected in about 15% of all CRCs; 3% are of these are associated with Lynch syndrome and the other 12% are caused by sporadic. Colorectal tumors with MSI have distinctive features compared with microsatellite stable tumors. Due to the high percentage of MSI+ CRC in Iran, screening of this type of CRC is imperative. Two markers were analyzed in tissues and sera of 44 normal volunteers and tumor and matched normal mucosal tissues as well as sera of 44 patients with sporadic CRC. The sensitivity and specificity of BAT-26 with real time PCR method (Hybridization probe) were 100% in comparison with sequencing method as the gold standard, while HPLC had a lower sensitivity and specificity. According to HPLC data, BAT-26 was more sensitive than BAT-25 in identifying MSI tumors. Therefore, MSI typing using the BAT-26 hybridization probe method compared to HPLC could be considered as an accurate method for diagnosing MSI in CRC tumors but not in serum circulating DNAs.

  5. On Potentials and Limitations of a Hybrid WLAN-RFID Indoor Positioning Technique

    Directory of Open Access Journals (Sweden)

    Silverio C. Spinella

    2010-01-01

    Full Text Available This paper addresses the important issue of position estimation in indoor environments. Starting point of the research is positioning techniques that exploit the knowledge of power levels of RF signals from multiple 802.11 WLAN APs (Access Points. In particular, the key idea in this paper is to enhance the performance of a WLAN fingerprinting approach by coupling it to a RFID-based procedure. WLAN and RFID technologies are synergistically used to provide a platform for a more performing positioning process, in which the very strong identification capabilities of the RFID technology allow to increase the accuracy of positioning systems via WLAN fingerprinting. The algorithm performance is assessed through general and repeatable experimental campaigns, during which the main algorithm parameters are dimensioned. The results testify both to the feasibility of the solution and to its higher accuracy (attainable at very reduced costs compared to traditional positioning techniques.

  6. POWER OPTIMIZED DATAPATH UNITS OF HYBRID EMBEDDED CORE ARCHITECTURE USING CLOCK GATING TECHNIQUE

    National Research Council Canada - National Science Library

    T.Subhashini; M.Kamaraju

    2015-01-01

    ...% of the total power dissipation. The main goal of this work is to implement a prototype power optimized datapath unit and ALU of Hybrid Embedded Controller Architecture targeted on to the FPGA chip and analyze the power consumption...

  7. Application of optimization technique to noncrystalline x-ray diffraction microscopy: Guided hybrid input-output method

    Science.gov (United States)

    Chen, Chien-Chun; Miao, Jianwei; Wang, C. W.; Lee, T. K.

    2007-08-01

    We have developed an algorithm that combines the concept of optimization with the conventional hybrid input-output (HIO) algorithm for phase retrieval of oversampled diffraction intensities. In particular, the optimization algorithm of guiding searching direction to locate the global minimum has been implemented. Compared with HIO, this guided HIO algorithm retrieves the lost phase information from diffraction intensities with much better accuracy.

  8. RAPD Technique Used to Determine the Purity of Hybrid Hot Pepper Seeds

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    Two hybrid hot pepper varieties Xiangyan 5 and Xiangyan 10, and their parents were analyzed the polymerase chain reaction with MJ /PT 200 Peltrier Themal Cycler and DS 800 White-ultravilot Transilluminator to set up a RAPD system adaptable to the purity determination of the hybrid seeds. Among the 39 random primers, 2 and 4 primers were found to be used effectively in Xiangyan 5 and Xiangyan 10 respectively.

  9. Optimisation Sizing of Hybrid Wind-Diesel Systems using Linear Programming Technique

    OpenAIRE

    Gan, Leong Kit; Shek, Jonathan; Mueller, Markus

    2014-01-01

    Despite the great potential of hybrid wind-diesel system in supplying energy to remote or island communities, sizing the system components have been a challenging problem for many project managers due to the reliance on various factors. This work considers utilising a fixed speed wind turbine (induction generator) in the hybrid system. It requires energy for start-up operation and this work takes into account for sizing the battery storage. In addition, the trade-off between the number of bat...

  10. Hybrid dynamic radioactive particle tracking (RPT) calibration technique for multiphase flow systems

    Science.gov (United States)

    Khane, Vaibhav; Al-Dahhan, Muthanna H.

    2017-04-01

    The radioactive particle tracking (RPT) technique has been utilized to measure three-dimensional hydrodynamic parameters for multiphase flow systems. An analytical solution to the inverse problem of the RPT technique, i.e. finding the instantaneous tracer positions based upon instantaneous counts received in the detectors, is not possible. Therefore, a calibration to obtain a counts-distance map is needed. There are major shortcomings in the conventional RPT calibration method due to which it has limited applicability in practical applications. In this work, the design and development of a novel dynamic RPT calibration technique are carried out to overcome the shortcomings of the conventional RPT calibration method. The dynamic RPT calibration technique has been implemented around a test reactor with 1foot in diameter and 1 foot in height using Cobalt-60 as an isotopes tracer particle. Two sets of experiments have been carried out to test the capability of novel dynamic RPT calibration. In the first set of experiments, a manual calibration apparatus has been used to hold a tracer particle at known static locations. In the second set of experiments, the tracer particle was moved vertically downwards along a straight line path in a controlled manner. The obtained reconstruction results about the tracer particle position were compared with the actual known position and the reconstruction errors were estimated. The obtained results revealed that the dynamic RPT calibration technique is capable of identifying tracer particle positions with a reconstruction error between 1 to 5.9 mm for the conditions studied which could be improved depending on various factors outlined here.

  11. Using Array-Based Comparative Genomic Hybridization to Diagnose Pallister-Killian Syndrome.

    Science.gov (United States)

    Lee, Mi Na; Lee, Jiwon; Yu, Hee Joon; Lee, Jeehun; Kim, Sun Hee

    2017-01-01

    Pallister-Killian syndrome (PKS) is a rare multisystem disorder characterized by isochromosome 12p and tissue-limited mosaic tetrasomy 12p. In this study, we diagnosed three pediatric patients who were suspicious of having PKS using array-based comparative genomic hybridization (array CGH) and FISH analyses performed on peripheral lymphocytes. Patients 1 and 2 presented with craniofacial dysmorphic features, hypotonia, and a developmental delay. Array CGH revealed two to three copies of 12p in patient 1 and three copies in patient 2. FISH analysis showed trisomy or tetrasomy 12p. Patient 3, who had clinical features comparable to those of patients 1 and 2, was diagnosed by using FISH analysis alone. Here, we report three patients with mosaic tetrasomy 12p. There have been only reported cases diagnosed by chromosome analysis and FISH analysis on skin fibroblast or amniotic fluid. To our knowledge, patient 1 was the first case diagnosed by using array CGH performed on peripheral lymphocytes in Korea.

  12. Comparative study of PP0275C hybrid photodetector and XP2020Q photomultiplier in scintillation detection

    Energy Technology Data Exchange (ETDEWEB)

    Moszynski, Marek [Soltan Institute for Nuclear Studies, PL 05-400 Swierk-Otwock (Poland); Klamra, Wlodzimierz [Royal Institute of Technology, AlbaNova, S-106 91 Stockholm (Sweden); Wolski, Dariusz [Soltan Institute for Nuclear Studies, PL 05-400 Swierk-Otwock (Poland); Czarnacki, Wieslaw [Soltan Institute for Nuclear Studies, PL 05-400 Swierk-Otwock (Poland); Kapusta, Maciej [Soltan Institute for Nuclear Studies, PL 05-400 Swierk-Otwock (Poland); Balcerzyk, Marcin [Soltan Institute for Nuclear Studies, PL 05-400 Swierk-Otwock (Poland)

    2006-05-15

    The properties of a hybrid photodetector (HPD), type PP0275C, produced by Delft Electronic Products B.V., for scintillation detection and spectrometry were studied and compared to a standard XP2020Q photomultiplier. The study was performed for several scintillators, such as NaI(Tl), CsI(Tl) and LSO(Ce) of different dimensions. The excellent capability of the HPD to resolve single photoelectron events was fully confirmed. However, the study of the HPD with the scintillators showed a dramatically reduced number of photoelectrons and a further deterioration of energy resolution, depending on the size (diameter or length) of the crystals. For a 10 mm diameter NaI(Tl) a number of 5000{+-}250 photoelectrons/MeV was measured, which corresponds to about 56% of that observed with the XP2020Q with comparable quantum efficiency. An energy resolution of 9.2% for 662 keV {gamma}-rays from a {sup 137}Cs source as measured with the HPD light readout indicated on a serious degradation, larger than that arising from the statistics of photoelectrons. In conclusion, the study showed that this HPD is optimized for single photon detection but its application to scintillation detection is very limited.

  13. Comparative evaluation of biomass power generation systems in China using hybrid life cycle inventory analysis.

    Science.gov (United States)

    Liu, Huacai; Yin, Xiuli; Wu, Chuangzhi

    2014-01-01

    There has been a rapid growth in using agricultural residues as an energy source to generate electricity in China. Biomass power generation (BPG) systems may vary significantly in technology, scale, and feedstock and consequently in their performances. A comparative evaluation of five typical BPG systems has been conducted in this study through a hybrid life cycle inventory (LCI) approach. Results show that requirements of fossil energy savings, and greenhouse gas (GHG) emission reductions, as well as emission reductions of SO2 and NOx, can be best met by the BPG systems. The cofiring systems were found to behave better than the biomass-only fired system and the biomass gasification systems in terms of energy savings and GHG emission reductions. Comparing with results of conventional process-base LCI, an important aspect to note is the significant contribution of infrastructure, equipment, and maintenance of the plant, which require the input of various types of materials, fuels, services, and the consequent GHG emissions. The results demonstrate characteristics and differences of BPG systems and help identify critical opportunities for biomass power development in China.

  14. Comparative Genomic Hybridization Selection of Blastocysts for Repeated Implantation Failure Treatment: A Pilot Study

    Science.gov (United States)

    Greco, Ermanno; Bono, Sara; Ruberti, Alessandra; Lobascio, Anna Maria; Greco, Pierfrancesco; Biricik, Anil; Spizzichino, Letizia; Greco, Alessia; Tesarik, Jan; Minasi, Maria Giulia; Fiorentino, Francesco

    2014-01-01

    The aim of this study is to determine if the use of preimplantation genetic screening (PGS) by array comparative genomic hybridization (array CGH) and transfer of a single euploid blastocyst in patients with repeated implantation failure (RIF) can improve clinical results. Three patient groups are compared: 43 couples with RIF for whom embryos were selected by array CGH (group RIF-PGS), 33 couples with the same history for whom array CGH was not performed (group RIF NO PGS), and 45 good prognosis infertile couples with array CGH selected embryos (group NO RIF PGS). A single euploid blastocyst was transferred in groups RIF-PGS and NO RIF PGS. Array CGH was not performed in group RIF NO PGS in which 1-2 blastocysts were transferred. One monoembryonic sac with heartbeat was found in 28 patients of group RIF PGS and 31 patients of group NO RIF PGS showing similar clinical pregnancy and implantation rates (68.3% and 70.5%, resp.). In contrast, an embryonic sac with heartbeat was only detected in 7 (21.2%) patients of group RIF NO PGS. In conclusion, PGS by array CGH with single euploid blastocyst transfer appears to be a successful strategy for patients with multiple failed IVF attempts. PMID:24779011

  15. Comparative Evaluation of Biomass Power Generation Systems in China Using Hybrid Life Cycle Inventory Analysis

    Directory of Open Access Journals (Sweden)

    Huacai Liu

    2014-01-01

    Full Text Available There has been a rapid growth in using agricultural residues as an energy source to generate electricity in China. Biomass power generation (BPG systems may vary significantly in technology, scale, and feedstock and consequently in their performances. A comparative evaluation of five typical BPG systems has been conducted in this study through a hybrid life cycle inventory (LCI approach. Results show that requirements of fossil energy savings, and greenhouse gas (GHG emission reductions, as well as emission reductions of SO2 and NOx, can be best met by the BPG systems. The cofiring systems were found to behave better than the biomass-only fired system and the biomass gasification systems in terms of energy savings and GHG emission reductions. Comparing with results of conventional process-base LCI, an important aspect to note is the significant contribution of infrastructure, equipment, and maintenance of the plant, which require the input of various types of materials, fuels, services, and the consequent GHG emissions. The results demonstrate characteristics and differences of BPG systems and help identify critical opportunities for biomass power development in China.

  16. arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays

    Directory of Open Access Journals (Sweden)

    Moreau Yves

    2005-05-01

    Full Text Available Abstract Background The availability of the human genome sequence as well as the large number of physically accessible oligonucleotides, cDNA, and BAC clones across the entire genome has triggered and accelerated the use of several platforms for analysis of DNA copy number changes, amongst others microarray comparative genomic hybridization (arrayCGH. One of the challenges inherent to this new technology is the management and analysis of large numbers of data points generated in each individual experiment. Results We have developed arrayCGHbase, a comprehensive analysis platform for arrayCGH experiments consisting of a MIAME (Minimal Information About a Microarray Experiment supportive database using MySQL underlying a data mining web tool, to store, analyze, interpret, compare, and visualize arrayCGH results in a uniform and user-friendly format. Following its flexible design, arrayCGHbase is compatible with all existing and forthcoming arrayCGH platforms. Data can be exported in a multitude of formats, including BED files to map copy number information on the genome using the Ensembl or UCSC genome browser. Conclusion ArrayCGHbase is a web based and platform independent arrayCGH data analysis tool, that allows users to access the analysis suite through the internet or a local intranet after installation on a private server. ArrayCGHbase is available at http://medgen.ugent.be/arrayCGHbase/.

  17. Causal-Comparative Study Analyzing Student Success in Hybrid Anatomy and Physiology Courses

    Science.gov (United States)

    Levy, Jacqueline Anita

    2013-01-01

    In the biological sciences, higher student success levels are achieved in traditionally formatted, face-to-face coursework than in hybrid courses. The methodologies used to combine hybrid and in-person elements to the course need to be applied to the biological sciences to emulate the success seen in the traditional courses since the number of…

  18. Naturally occurring hybrids of coral reef butterflyfishes have similar fitness compared to parental species

    Science.gov (United States)

    Hobbs, Jean-Paul A.; Pratchett, Morgan S.; Bay, Line K.; van Herwerden, Lynne

    2017-01-01

    Hybridisation can produce evolutionary novelty by increasing fitness and adaptive capacity. Heterosis, or hybrid vigour, has been documented in many plant and animal taxa, and is a notable consequence of hybridisation that has been exploited for decades in agriculture and aquaculture. On the contrary, loss of fitness in naturally occurring hybrid taxa has been observed in many cases. This can have negative consequences for the parental species involved (wasted reproductive effort), and has raised concerns for species conservation. This study evaluates the relative fitness of previously documented butterflyfish hybrids of the genus Chaetodon from the Indo-Pacific suture zone at Christmas Island. Histological examination confirmed the reproductive viability of Chaetodon hybrids. Examination of liver lipid content showed that hybrid body condition was not significantly different from parent species body condition. Lastly, size at age data revealed no difference in growth rates and asymptotic length between hybrids and parent species. Based on the traits measured in this study, naturally occurring hybrids of Chaetodon butterflyfishes have similar fitness to their parental species, and are unlikely to supplant parental species under current environmental conditions at the suture zone. However, given sufficient fitness and ongoing genetic exchange between the respective parental species, hybrids are likely to persist within the suture zone. PMID:28257492

  19. Hybrid practices as a means to implement quality improvement: A comparative qualitative study in a Dutch and Swedish hospital.

    Science.gov (United States)

    Quartz-Topp, Julia; Sanne, Johan M; Pöstges, Heide

    2016-11-15

    Managers and scholars commonly perceive resistance from professionals as hampering the implementation of quality improvement (QI) and refer to the incompatibility of clinical and managerial approaches to QI as a reason. Yet a growing body of research indicates that, in practice, these two approaches rather blend into hybrid practices that embody different types of QI-related knowledge and values. This opens up a new perspective on implementation challenges that moves attention away from resistance against managerial QI toward difficulties for clinicians to draw together different types of knowledge and values within their clinical work. So far, little is known about how managers can support clinicians to generate hybrid QI practices. The aim of this study was to deepen our understanding of how managers can support the generation of hybrid practices that help clinicians to integrate QI into their everyday work. We draw on comparative qualitative research including 21 semistructured interviews, documentary analysis, and participant observation that we conducted in one Dutch and one Swedish hospital over a period of 8 months in 2011/2012. Hospital managers designed hybrid forums, tools, and professional roles in order to facilitate the integration of different QI practices, knowledge, and values. This integration generated new hybrid practices and an infrastructure for QI that has potential to support clinicians in their efforts to align different demands. New opportunities to implement QI emerge when we change the implementation problem from clinical resistance to the need of support for clinicians to develop hybrid QI practices. Hospital managers then have to intentionally organize for the generation of hybrid practices by designing, for example, hybrid forums, tools, and professional roles that integrate different knowledge and values in a nonhierarchical way.

  20. Genomic profiling of oral squamous cell carcinoma by array-based comparative genomic hybridization.

    Directory of Open Access Journals (Sweden)

    Shunichi Yoshioka

    Full Text Available We designed a study to investigate genetic relationships between primary tumors of oral squamous cell carcinoma (OSCC and their lymph node metastases, and to identify genomic copy number aberrations (CNAs related to lymph node metastasis. For this purpose, we collected a total of 42 tumor samples from 25 patients and analyzed their genomic profiles by array-based comparative genomic hybridization. We then compared the genetic profiles of metastatic primary tumors (MPTs with their paired lymph node metastases (LNMs, and also those of LNMs with non-metastatic primary tumors (NMPTs. Firstly, we found that although there were some distinctive differences in the patterns of genomic profiles between MPTs and their paired LNMs, the paired samples shared similar genomic aberration patterns in each case. Unsupervised hierarchical clustering analysis grouped together 12 of the 15 MPT-LNM pairs. Furthermore, similarity scores between paired samples were significantly higher than those between non-paired samples. These results suggested that MPTs and their paired LNMs are composed predominantly of genetically clonal tumor cells, while minor populations with different CNAs may also exist in metastatic OSCCs. Secondly, to identify CNAs related to lymph node metastasis, we compared CNAs between grouped samples of MPTs and LNMs, but were unable to find any CNAs that were more common in LNMs. Finally, we hypothesized that subpopulations carrying metastasis-related CNAs might be present in both the MPT and LNM. Accordingly, we compared CNAs between NMPTs and LNMs, and found that gains of 7p, 8q and 17q were more common in the latter than in the former, suggesting that these CNAs may be involved in lymph node metastasis of OSCC. In conclusion, our data suggest that in OSCCs showing metastasis, the primary and metastatic tumors share similar genomic profiles, and that cells in the primary tumor may tend to metastasize after acquiring metastasis-associated CNAs.

  1. Analysis of Non-binary Hybrid LDPC Codes

    CERN Document Server

    Sassatelli, Lucile

    2008-01-01

    In this paper, we analyse asymptotically a new class of LDPC codes called Non-binary Hybrid LDPC codes, which has been recently introduced. We use density evolution techniques to derive a stability condition for hybrid LDPC codes, and prove their threshold behavior. We study this stability condition to conclude on asymptotic advantages of hybrid LDPC codes compared to their non-hybrid counterparts.

  2. Biomechanical Evaluation of a Mandibular Spanning Plate Technique Compared to Standard Plating Techniques to Treat Mandibular Symphyseal Fractures

    Directory of Open Access Journals (Sweden)

    Matthew Richardson

    2015-01-01

    Full Text Available Purpose. The purpose of this study is to compare the biomechanical behavior of the spanning reconstruction plate compared to standard plating techniques for mandibular symphyseal fractures. Materials and Methods. Twenty-five human mandible replicas were used. Five unaltered synthetic mandibles were used as controls. Four experimental groups of different reconstruction techniques with five in each group were tested. Each synthetic mandible was subjected to a splaying force applied to the mandibular angle by a mechanical testing unit until the construct failed. Peak load and stiffness were recorded. The peak load and stiffness were analyzed using ANOVA and the Tukey test at a confidence level of 95% (P<0.05. Results. The two parallel plates’ group showed statistically significant lower values for peak load and stiffness compared to all other groups. No statistically significant difference was found for peak load and stiffness between the control (C group, lag screw (LS group, and the spanning plate (SP1 group. Conclusions. The spanning reconstruction plate technique for fixation of mandibular symphyseal fractures showed similar mechanical behavior to the lag screw technique when subjected to splaying forces between the mandibular gonial angles and may be considered as an alternative technique when increased reconstructive strength is needed.

  3. Comparative Analysis of the Endosperm Proteins Separated by 2-D Electrophoresis for Two Cultivars of Hybrid Rice (Oryza sativa L.)

    Institute of Scientific and Technical Information of China (English)

    Pingfang Yang; Shihua Shen; Tingyun Kuang

    2006-01-01

    Liangyoupeijiu is a two-parental-line, and Shanyou63 is a three-parental-line hybrid rice (Oryza sativa L.).Although both belong to the indica subspecies, they have obvious differences with respect to morphology,physiology and grain quality. Variations in endosperm protein compositions were studied by comparing the 2-D electrophoresis (2-DE) maps for these two cultivars of hybrid rice. After matrix-assisted laser desorption/ionization time of flight mass spectrometry (MALDI-TOF/MS) analysis, a 21-kDa precursor of 19-kDa globulin was identified as the major storage protein for both cultivars. Some isoforms of peroxiredoxin and seed maturation protein were found to only exist in Shanyou63, whereas aldose reductase and starch granule-bound starch synthase were only detected in Liangyoupeijiu. These data might provide a foundation for further comparative studies of these two cultivars of hybrid rice.

  4. Chromosomal Aberrations in ETV6/RUNX1-positive Childhood Acute Lymphoblastic Leukemia using 244K Oligonucleotide Array Comparative Genomic Hybridization

    Directory of Open Access Journals (Sweden)

    Zakaria Zubaidah

    2012-11-01

    Full Text Available Abstract Background Acute lymphoblastic leukemia (ALL is a heterogeneous form of hematological cancer consisting of various subtypes. We are interested to study the genetic aberration in precursor B-cell ALL with specific t(12;21 translocation in childhood ALL patients. A high resolution 244K array-based Comparative Genomic Hybridization (array-CGH was used to study eleven ETV6/RUNX1-positive childhood acute lymphoblastic leukemia (ALL patients. Result 155 chromosomal aberrations (119 losses, 36 gains were reported in the array findings, corresponding to 76.8% deletions and 23.2% amplifications. The ETV6 gene deletion occurred in 4 of the patients, corresponding to 45% of the sample. The most common alterations above 1 Mb were deletion 6q (13%, 12p (12% and 9p (8%, and duplication 4q (6% and Xq (4%. Other genes important in ALL were also identified in this study including RUNX1, CDKN2A, FHIT, and PAX5. The array-CGH technique was able to detect microdeletion as small as 400 bp. Conclusion The results demonstrate the usefulness of high resolution array-CGH as a complementary tool in the investigation of ALL.

  5. Comparative cytogenetics of six Indo-Pacific moray eels (Anguilliformes: Muraenidae) by chromosomal banding and fluorescence in situ hybridization.

    Science.gov (United States)

    Coluccia, E; Deidda, F; Cannas, R; Lobina, C; Cuccu, D; Deiana, A M; Salvadori, S

    2015-09-01

    A comparative cytogenetic analysis, using both conventional staining techniques and fluorescence in situ hybridization, of six Indo-Pacific moray eels from three different genera (Gymnothorax fimbriatus, Gymnothorax flavimarginatus, Gymnothorax javanicus, Gymnothorax undulatus, Echidna nebulosa and Gymnomuraena zebra), was carried out to investigate the chromosomal differentiation in the family Muraenidae. Four species displayed a diploid chromosome number 2n = 42, which is common among the Muraenidae. Two other species, G. javanicus and G. flavimarginatus, were characterized by different chromosome numbers (2n = 40 and 2n = 36). For most species, a large amount of constitutive heterochromatin was detected in the chromosomes, with species-specific C-banding patterns that enabled pairing of the homologous chromosomes. In all species, the major ribosomal genes were localized in the guanine-cytosine-rich region of one chromosome pair, but in different chromosomal locations. The (TTAGGG)n telomeric sequences were mapped onto chromosomal ends in all muraenid species studied. The comparison of the results derived from this study with those available in the literature confirms a substantial conservation of the diploid chromosome number in the Muraenidae and supports the hypothesis that rearrangements have occurred that have diversified their karyotypes. Furthermore, the finding of two species with different diploid chromosome numbers suggests that additional chromosomal rearrangements, such as Robertsonian fusions, have occurred in the karyotype evolution of the Muraenidae.

  6. A HYBRID TECHNIQUE FOR PAPR REDUCTION OF OFDM USING DHT PRECODING WITH PIECEWISE LINEAR COMPANDING

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    Thammana Ajay

    2016-06-01

    Full Text Available Orthogonal Frequency Division Multiplexing (OFDM is a fascinating approach for wireless communication applications which require huge amount of data rates. However, OFDM signal suffers from its large Peak-to-Average Power Ratio (PAPR, which results in significant distortion while passing through a nonlinear device, such as a transmitter high power amplifier (HPA. Due to this high PAPR, the complexity of HPA as well as DAC also increases. For the reduction of PAPR in OFDM many techniques are available. Among them companding is an attractive low complexity technique for the OFDM signal’s PAPR reduction. Recently, a piecewise linear companding technique is recommended aiming at minimizing companding distortion. In this paper, a collective piecewise linear companding approach with Discrete Hartley Transform (DHT method is expected to reduce peak-to-average of OFDM to a great extent. Simulation results shows that this new proposed method obtains significant PAPR reduction while maintaining improved performance in the Bit Error Rate (BER and Power Spectral Density (PSD compared to piecewise linear companding method.

  7. Novel fabrication technique of hybrid structure lens array for 3D images

    Science.gov (United States)

    Lee, Junsik; Kim, Junoh; Kim, Cheoljoong; Shin, Dooseub; Koo, Gyohyun; Won, Yong Hyub

    2016-03-01

    Tunable liquid lens arrays can produce three dimensional images by using electrowetting principle that alters surface tensions by applying voltage. This method has advantages of fast response time and low power consumption. However, it is challenging to fabricate a high fill factor liquid lens array and operate three dimensional images which demand high diopter. This study describes a hybrid structure lens array which has not only a liquid lens array but a solid lens array. A concave-shape lens array is unavoidable when using only the liquid lens array and some voltages are needed to make the lens flat. By placing the solid lens array on the liquid lens array, initial diopter can be positive. To fabricate the hybrid structure lens array, a conventional lithographic process in semiconductor manufacturing is needed. A negative photoresist SU-8 was used as chamber master molds. PDMS and UV adhesive replica molding are done sequentially. Two immiscible liquids, DI water and dodecane, are injected in the fabricated chamber, followed by sealing. The fabricated structure has a 20 by 20 pattern of cylindrical shaped circle array and the aperture size of each lens is 1mm. The thickness of the overall hybrid structure is about 2.8mm. Hybrid structure lens array has many advantages. Solid lens array has almost 100% fill factor and allow high efficiency. Diopter can be increased by more than 200 and negative diopter can be shifted to the positive region. This experiment showed several properties of the hybrid structure and demonstrated its superiority.

  8. Suppression subtractive hybridization and comparative expression analysis to identify developmentally regulated genes in filamentous fungi.

    Science.gov (United States)

    Gesing, Stefan; Schindler, Daniel; Nowrousian, Minou

    2013-09-01

    Ascomycetes differentiate four major morphological types of fruiting bodies (apothecia, perithecia, pseudothecia and cleistothecia) that are derived from an ancestral fruiting body. Thus, fruiting body differentiation is most likely controlled by a set of common core genes. One way to identify such genes is to search for genes with evolutionary conserved expression patterns. Using suppression subtractive hybridization (SSH), we selected differentially expressed transcripts in Pyronema confluens (Pezizales) by comparing two cDNA libraries specific for sexual and for vegetative development, respectively. The expression patterns of selected genes from both libraries were verified by quantitative real time PCR. Expression of several corresponding homologous genes was found to be conserved in two members of the Sordariales (Sordaria macrospora and Neurospora crassa), a derived group of ascomycetes that is only distantly related to the Pezizales. Knockout studies with N. crassa orthologues of differentially regulated genes revealed a functional role during fruiting body development for the gene NCU05079, encoding a putative MFS peptide transporter. These data indicate conserved gene expression patterns and a functional role of the corresponding genes during fruiting body development; such genes are candidates of choice for further functional analysis.

  9. Array comparative genomic hybridization-based characterization of genetic alterations in pulmonary neuroendocrine tumors.

    Science.gov (United States)

    Voortman, Johannes; Lee, Jih-Hsiang; Killian, Jonathan Keith; Suuriniemi, Miia; Wang, Yonghong; Lucchi, Marco; Smith, William I; Meltzer, Paul; Wang, Yisong; Giaccone, Giuseppe

    2010-07-20

    The goal of this study was to characterize and classify pulmonary neuroendocrine tumors based on array comparative genomic hybridization (aCGH). Using aCGH, we performed karyotype analysis of 33 small cell lung cancer (SCLC) tumors, 13 SCLC cell lines, 19 bronchial carcinoids, and 9 gastrointestinal carcinoids. In contrast to the relatively conserved karyotypes of carcinoid tumors, the karyotypes of SCLC tumors and cell lines were highly aberrant. High copy number (CN) gains were detected in SCLC tumors and cell lines in cytogenetic bands encoding JAK2, FGFR1, and MYC family members. In some of those samples, the CN of these genes exceeded 100, suggesting that they could represent driver alterations and potential drug targets in subgroups of SCLC patients. In SCLC tumors, as well as bronchial carcinoids and carcinoids of gastrointestinal origin, recurrent CN alterations were observed in 203 genes, including the RB1 gene and 59 microRNAs of which 51 locate in the DLK1-DIO3 domain. These findings suggest the existence of partially shared CN alterations in these tumor types. In contrast, CN alterations of the TP53 gene and the MYC family members were predominantly observed in SCLC. Furthermore, we demonstrated that the aCGH profile of SCLC cell lines highly resembles that of clinical SCLC specimens. Finally, by analyzing potential drug targets, we provide a genomics-based rationale for targeting the AKT-mTOR and apoptosis pathways in SCLC.

  10. Chromosomal Localization of DNA Amplifications in Neuroblastoma Tumors Using cDNA Microarray Comparative Genomic Hybridization

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    Ben Beheshti

    2003-01-01

    Full Text Available Conventional comparative genomic hybridization (CGH profiling of neuroblastomas has identified many genomic aberrations, although the limited resolution has precluded a precise localization of sequences of interest within amplicons. To map high copy number genomic gains in clinically matched stage IV neuroblastomas, CGH analysis using a 19,200-feature cDNA microarray was used. A dedicated (freely available algorithm was developed for rapid in silico determination of chromosomal localizations of microarray cDNA targets, and for generation of an ideogram-type profile of copy number changes. Using these methodologies, novel gene amplifications undetectable by chromosome CGH were identified, and larger MYCN amplicon sizes (in one tumor up to 6 Mb than those previously reported in neuroblastoma were identified. The genes HPCAL1, LPIN1/KIAA0188, NAG, and NSE1/LOC151354 were found to be coamplified with MYCN. To determine whether stage IV primary tumors could be further subclassified based on their genomic copy number profiles, hierarchical clustering was performed. Cluster analysis of microarray CGH data identified three groups: 1 no amplifications evident, 2 a small MYCN amplicon as the only detectable imbalance, and 3 a large MYCN amplicon with additional gene amplifications. Application of CGH to cDNA microarray targets will help to determine both the variation of amplicon size and help better define amplification-dependent and independent pathways of progression in neuroblastoma.

  11. New Tools for Embryo Selection: Comprehensive Chromosome Screening by Array Comparative Genomic Hybridization

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    Lorena Rodrigo

    2014-01-01

    Full Text Available The objective of this study was to evaluate the usefulness of comprehensive chromosome screening (CCS using array comparative genomic hybridization (aCGH. The study included 1420 CCS cycles for recurrent miscarriage (n=203; repetitive implantation failure (n=188; severe male factor (n=116; previous trisomic pregnancy (n=33; and advanced maternal age (n=880. CCS was performed in cycles with fresh oocytes and embryos (n=774; mixed cycles with fresh and vitrified oocytes (n=320; mixed cycles with fresh and vitrified day-2 embryos (n=235; and mixed cycles with fresh and vitrified day-3 embryos (n=91. Day-3 embryo biopsy was performed and analyzed by aCGH followed by day-5 embryo transfer. Consistent implantation (range: 40.5–54.2% and pregnancy rates per transfer (range: 46.0–62.9% were obtained for all the indications and independently of the origin of the oocytes or embryos. However, a lower delivery rate per cycle was achieved in women aged over 40 years (18.1% due to the higher percentage of aneuploid embryos (85.3% and lower number of cycles with at least one euploid embryo available per transfer (40.3%. We concluded that aneuploidy is one of the major factors which affect embryo implantation.

  12. Rapid High Resolution Single Nucleotide Polymorphism–Comparative Genome Hybridization Mapping in Caenorhabditis elegans

    Science.gov (United States)

    Flibotte, Stephane; Edgley, Mark L.; Maydan, Jason; Taylor, Jon; Zapf, Rick; Waterston, Robert; Moerman, Donald G.

    2009-01-01

    We have developed a significantly improved and simplified method for high-resolution mapping of phenotypic traits in Caenorhabditis elegans using a combination of single nucleotide polymorphisms (SNPs) and oligo array comparative genome hybridization (array CGH). We designed a custom oligonucleotide array using a subset of confirmed SNPs between the canonical wild-type Bristol strain N2 and the Hawaiian isolate CB4856, populated with densely overlapping 50-mer probes corresponding to both N2 and CB4856 SNP sequences. Using this method a mutation can be mapped to a resolution of ∼200 kb in a single genetic cross. Six mutations representing each of the C. elegans chromosomes were detected unambiguously and at high resolution using genomic DNA from populations derived from as few as 100 homozygous mutant segregants of mutant N2/CB4856 heterozygotes. Our method completely dispenses with the PCR, restriction digest, and gel analysis of standard SNP mapping and should be easy to extend to any organism with interbreeding strains. This method will be particularly powerful when applied to difficult or hard-to-map low-penetrance phenotypes. It should also be possible to map polygenic traits using this method. PMID:18957702

  13. Microdeletion and microduplication analysis of chinese conotruncal defects patients with targeted array comparative genomic hybridization.

    Directory of Open Access Journals (Sweden)

    Xiaohui Gong

    Full Text Available OBJECTIVE: The current study aimed to develop a reliable targeted array comparative genomic hybridization (aCGH to detect microdeletions and microduplications in congenital conotruncal defects (CTDs, especially on 22q11.2 region, and for some other chromosomal aberrations, such as 5p15-5p, 7q11.23 and 4p16.3. METHODS: Twenty-seven patients with CTDs, including 12 pulmonary atresia (PA, 10 double-outlet right ventricle (DORV, 3 transposition of great arteries (TGA, 1 tetralogy of Fallot (TOF and one ventricular septal defect (VSD, were enrolled in this study and screened for pathogenic copy number variations (CNVs, using Agilent 8 x 15K targeted aCGH. Real-time quantitative polymerase chain reaction (qPCR was performed to test the molecular results of targeted aCGH. RESULTS: Four of 27 patients (14.8% had 22q11.2 CNVs, 1 microdeletion and 3 microduplications. qPCR test confirmed the microdeletion and microduplication detected by the targeted aCGH. CONCLUSION: Chromosomal abnormalities were a well-known cause of multiple congenital anomalies (MCA. This aCGH using arrays with high-density coverage in the targeted regions can detect genomic imbalances including 22q11.2 and other 10 kinds CNVs effectively and quickly. This approach has the potential to be applied to detect aneuploidy and common microdeletion/microduplication syndromes on a single microarray.

  14. Evaluation of Apis mellifera syriaca Levant region honeybee conservation using comparative genome hybridization.

    Science.gov (United States)

    Haddad, Nizar Jamal; Batainh, Ahmed; Saini, Deepti; Migdadi, Osama; Aiyaz, Mohamed; Manchiganti, Rushiraj; Krishnamurthy, Venkatesh; Al-Shagour, Banan; Brake, Mohammad; Bourgeois, Lelania; De Guzman, Lilia; Rinderer, Thomas; Hamouri, Zayed Mahoud

    2016-06-01

    Apis mellifera syriaca is the native honeybee subspecies of Jordan and much of the Levant region. It expresses behavioral adaptations to a regional climate with very high temperatures, nectar dearth in summer, attacks of the Oriental wasp and is resistant to Varroa mites. The A. m. syriaca control reference sample (CRS) in this study was originally collected and stored since 2001 from "Wadi Ben Hammad", a remote valley in the southern region of Jordan. Morphometric and mitochondrial DNA markers of these honeybees had shown highest similarity to reference A. m. syriaca samples collected in 1952 by Brother Adam of samples collected from the Middle East. Samples 1-5 were collected from the National Center for Agricultural Research and Extension breeding apiary which was established for the conservation of A. m. syriaca. Our objective was to determine the success of an A. m. syriaca honey bee conservation program using genomic information from an array-based comparative genomic hybridization platform to evaluate genetic similarities to a historic reference collection (CRS). Our results had shown insignificant genomic differences between the current population in the conservation program and the CRS indicated that program is successfully conserving A. m. syriaca. Functional genomic variations were identified which are useful for conservation monitoring and may be useful for breeding programs designed to improve locally adapted strains of A. m. syriaca.

  15. Custom Array Comparative Genomic Hybridization: the Importance of DNA Quality, an Expert Eye, and Variant Validation

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    Francesca Lantieri

    2017-03-01

    Full Text Available The presence of false positive and false negative results in the Array Comparative Genomic Hybridization (aCGH design is poorly addressed in literature reports. We took advantage of a custom aCGH recently carried out to analyze its design performance, the use of several Agilent aberrations detection algorithms, and the presence of false results. Our study provides a confirmation that the high density design does not generate more noise than standard designs and, might reach a good resolution. We noticed a not negligible presence of false negative and false positive results in the imbalances call performed by the Agilent software. The Aberration Detection Method 2 (ADM-2 algorithm with a threshold of 6 performed quite well, and the array design proved to be reliable, provided that some additional filters are applied, such as considering only intervals with average absolute log2ratio above 0.3. We also propose an additional filter that takes into account the proportion of probes with log2ratio exceeding suggestive values for gain or loss. In addition, the quality of samples was confirmed to be a crucial parameter. Finally, this work raises the importance of evaluating the samples profiles by eye and the necessity of validating the imbalances detected.

  16. Comparative genome research between maize and rice using genomic in situ hybridization

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    Using the genomic DNAs of maize and rice as probes respectively,the homology of maize and rice genomes was assessed by genomic in situ hybridization. When rice genomic DNAs were hybridized to maize, all chromosomes displayed many multiple discrete regions, while each rice chromosome delineated a single consecutive chromosomal region after they were hybridized with maize genomic DNAs. The results indicate that the genomes of maize and rice share high homology, and confirm the proposal that maize and rice are diverged from a common ancestor.

  17. Supervised Lowess normalization of comparative genome hybridization data – application to lactococcal strain comparisons

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    Karsens Harma A

    2008-02-01

    Full Text Available Abstract Background Array-based comparative genome hybridization (aCGH is commonly used to determine the genomic content of bacterial strains. Since prokaryotes in general have less conserved genome sequences than eukaryotes, sequence divergences between the genes in the genomes used for an aCGH experiment obstruct determination of genome variations (e.g. deletions. Current normalization methods do not take into consideration sequence divergence between target and microarray features and therefore cannot distinguish a difference in signal due to systematic errors in the data or due to sequence divergence. Results We present supervised Lowess, or S-Lowess, an application of the subset Lowess normalization method. By using a predicted subset of array features with minimal sequence divergence between the analyzed strains for the normalization procedure we remove systematic errors from dual-dye aCGH data in two steps: (1 determination of a subset of conserved genes (i.e. likely conserved genes, LCG; and (2 using the LCG for subset Lowess normalization. Subset Lowess determines the correction factors for systematic errors in the subset of array features and normalizes all array features using these correction factors. The performance of S-Lowess was assessed on aCGH experiments in which differentially labeled genomic DNA fragments of Lactococcus lactis IL1403 and L. lactis MG1363 strains were hybridized to IL1403 DNA microarrays. Since both genomes are sequenced and gene deletions identified, the success rate of different aCGH normalization methods in detecting these deletions in the MG1363 genome were determined. S-Lowess detects 97% of the deletions, whereas other aCGH normalization methods detect up to only 60% of the deletions. Conclusion S-Lowess is implemented in a user-friendly web-tool accessible from http://bioinformatics.biol.rug.nl/websoftware/s-lowess. We demonstrate that it outperforms existing normalization methods and maximizes

  18. HybridSPE: A novel technique to reduce phospholipid-based matrix effect in LC-ESI-MS Bioanalysis.

    Science.gov (United States)

    Ahmad, Shafeeque; Kalra, Harsh; Gupta, Amit; Raut, Bharat; Hussain, Arshad; Rahman, Md Akhlaquer

    2012-10-01

    When complex biological materials are analyzed without an adequate sample preparation technique, MS signal and response undergo significant alteration and result in poor quantification and assay. This problem generally takes place due to the presence of several endogenous materials component in samples. One of the major causes of ion suppression in bioanalysis is the presence of phospholipids during LC-MS analysis. The phospholipid-based matrix effect was investigated with a commercially available electro spray ionization (ESI) source coupled with a triple quadrupole mass spectrometer. HybridSPE dramatically reduced the levels of residual phospholipids in biological samples, leading to significant reduction in matrix effects. This new procedure that combines the simplicity of precipitation with the selectivity of SPE allows obtaining much cleaner extracts than with conventional procedures. HybridSPE-precipitation procedure provides significant improvement in bioanalysis and a practical and fast way to ensure the avoidance of phospholipids-based matrix effects. The present review outlines the HybridSPE technique to minimize phospholipids-based matrix effects on LC-ESI-MS bioanalysis.

  19. HybridSPE: A novel technique to reduce phospholipid-based matrix effect in LC-ESI-MS Bioanalysis

    Directory of Open Access Journals (Sweden)

    Shafeeque Ahmad

    2012-01-01

    Full Text Available When complex biological materials are analyzed without an adequate sample preparation technique, MS signal and response undergo significant alteration and result in poor quantification and assay. This problem generally takes place due to the presence of several endogenous materials component in samples. One of the major causes of ion suppression in bioanalysis is the presence of phospholipids during LC-MS analysis. The phospholipid-based matrix effect was investigated with a commercially available electro spray ionization (ESI source coupled with a triple quadrupole mass spectrometer. HybridSPE dramatically reduced the levels of residual phospholipids in biological samples, leading to significant reduction in matrix effects. This new procedure that combines the simplicity of precipitation with the selectivity of SPE allows obtaining much cleaner extracts than with conventional procedures. HybridSPE-precipitation procedure provides significant improvement in bioanalysis and a practical and fast way to ensure the avoidance of phospholipids-based matrix effects. The present review outlines the HybridSPE technique to minimize phospholipids-based matrix effects on LC-ESI-MS bioanalysis.

  20. Comparative genomic hybridization of microdissected samples from different stages in the development of a seminoma and a non-seminoma

    NARCIS (Netherlands)

    Looijenga, LHJ; Rosenberg, C; van Gurp, RJHLM; Geelen, E; van Echten-Arends, J; de Jong, B; Mostert, M

    2000-01-01

    Human testicular germ cell tumours (TGCTs) of adolescents and adults, both seminomas and non-seminomas, originate from intratubular germ cell neoplasia (IGCN). Comparative genomic hybridization (CGH) was applied to microdissected samples from different stages of the development of a seminoma and a m

  1. 1-Mb resolution array-based comparative genomic hybridization using a BAC clone set optimized for cancer gene analysis

    NARCIS (Netherlands)

    Greshock, J; Naylor, TL; Margolin, A; Diskin, S; Cleaver, SH; Futreal, PA; deJong, PJ; Zhao, SY; Liebman, M; Weber, BL

    2004-01-01

    Array-based comparative genomic hybridization (aCGH) is a recently developed tool for genome-wide determination of DNA copy number alterations. This technology has tremendous potential for disease-gene discovery in cancer and developmental disorders as well as numerous other applications. However, w

  2. Behind the Final Grade in Hybrid v. Traditional Courses: Comparing Student Performance by Assessment Type, Core Competency, and Course Objective

    Science.gov (United States)

    Bain, Lisa Z.

    2012-01-01

    There are many different delivery methods used by institutions of higher education. These include traditional, hybrid, and online course offerings. The comparisons of these typically use final grade as the measure of student performance. This research study looks behind the final grade and compares student performance by assessment type, core…

  3. Comparative genomic hybridization of microdissected samples from different stages in the development of a seminoma and a non-seminoma

    NARCIS (Netherlands)

    Looijenga, LHJ; Rosenberg, C; van Gurp, RJHLM; Geelen, E; van Echten-Arends, J; de Jong, B; Mostert, M

    Human testicular germ cell tumours (TGCTs) of adolescents and adults, both seminomas and non-seminomas, originate from intratubular germ cell neoplasia (IGCN). Comparative genomic hybridization (CGH) was applied to microdissected samples from different stages of the development of a seminoma and a

  4. Array-based comparative genomic hybridization for genome-wide screening of DNA copy number in bladder tumors.

    NARCIS (Netherlands)

    Veltman, J.A.; Fridlyand, J.; Pejavar, S.; Olshen, A.B.; Korkola, J.E.; Vries, S. de; Carroll, P.; Kuo, W.L.; Pinkel, D.; Albertson, D.; Cordon-Cardo, C.; Jain, A.N.; Waldman, F.M.

    2003-01-01

    Genome-wide copy number profiles were characterized in 41 primary bladder tumors using array-based comparative genomic hybridization (array CGH). In addition to previously identified alterations in large chromosomal regions, alterations were identified in many small genomic regions, some with high-l

  5. Hybrid approach to AAA: bilateral "banana" technique to preserve hypogastric artery in complex anatomy aorto-biiliac aneurysm.

    Science.gov (United States)

    Mosquera Arochena, N; Molina Herrero, F; Carbalho Fernandez, C; Rodriguez Feijoo, G; Fernandez Lebrato, R; Barrios Castro, A; Garcia Fernandez, I

    2011-01-01

    The surgical approach for hypogastric preservation in aorto-iliac aneurysm (AAA) open repair (OR) has been described and performed with different techniques but all of them represent a higher mortality and potencial complications to the procedure; this is even more critical in bilateral disease. Since the introduction of the first endograft, a continuous development has occurred, such as the stent graft with specific branch designed for preserving antegrade flow in the hypogastric artery. On highly angulated and tortuous iliac anatomies, the use of Sandwich-Graft technique, as described by Armando Lobato, represents a valid alternative to iliac branch. The hybrid approach could be a good treatment option in young patients with AAA affecting hypogastric arteries. We present the technical description and a case report of bilateral "banana" technique perfor- med with flexible covered stent (Viabahn(®) WL Gore) to preserve both hypogastric arteries combined with open repair in a 52 years old patient. Technical report and Results: A bilateral retrograde endograft was implanted from both external ilac arteries to hypo- gastric artery excluding bilateral common iliac aneurysms followed by an open repair to the AAA (aneurismectomy + aorto bifemoral by-pass) with good inmediate and short-midterm follow up (12 months) This hybrid technique could be a good approach to hypogastric preservation in low risk and young patients reducing potencial complications of hypogastric artery oclusion.

  6. Chromosomal aberrations in benign and malignant Bilharzia-associated bladder lesions analyzed by comparative genomic hybridization

    Directory of Open Access Journals (Sweden)

    Ibrahim Muntaser

    2002-03-01

    Full Text Available Abstract Background Bilharzia-associated bladder cancer (BAC is a major health problem in countries where urinary schistosomiasis is endemic. Characterization of the genetic alterations in this cancer might enhance our understanding of the pathogenic mechanisms of the disease but, in contrast to nonbilharzia bladder cancer, BAC has rarely been the object of such scrutiny. In the present study, we aimed to characterize chromosomal imbalances in benign and malignant post-bilharzial lesions, and to determine whether their unique etiology yields a distinct cytogenetic profile as compared to chemically induced bladder tumors. Methods DNAs from 20 archival paraffin-embedded post-bilharzial bladder lesions (6 benign and 14 malignant obtained from Sudanese patients (12 males and 8 females with a history of urinary bilharziasis were investigated for chromosomal imbalances using comparative genomic hybridization (CGH. Subsequent FISH analysis with pericentromeric probes was performed on paraffin sections of the same cases to confirm the CGH results. Results Seven of the 20 lesions (6 carcinomas and one granuloma showed chromosomal imbalances varying from 1 to 6 changes. The most common chromosomal imbalances detected were losses of 1p21-31, 8p21-pter, and 9p and gain of 19p material, seen in three cases each, including the benign lesion. Conclusion Most of the detected imbalances have been repeatedly reported in non-bilharzial bladder carcinomas, suggesting that the cytogenetic profiles of chemical- and bilharzia-induced carcinomas are largely similar. However, loss of 9p seems to be more ubiquitous in BAC than in bladder cancer in industrialized countries.

  7. High-resolution comparative genomic hybridization of inflammatory breast cancer and identification of candidate genes.

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    Ismahane Bekhouche

    Full Text Available BACKGROUND: Inflammatory breast cancer (IBC is an aggressive form of BC poorly defined at the molecular level. We compared the molecular portraits of 63 IBC and 134 non-IBC (nIBC clinical samples. METHODOLOGY/FINDINGS: Genomic imbalances of 49 IBCs and 124 nIBCs were determined using high-resolution array-comparative genomic hybridization, and mRNA expression profiles of 197 samples using whole-genome microarrays. Genomic profiles of IBCs were as heterogeneous as those of nIBCs, and globally relatively close. However, IBCs showed more frequent "complex" patterns and a higher percentage of genes with CNAs per sample. The number of altered regions was similar in both types, although some regions were altered more frequently and/or with higher amplitude in IBCs. Many genes were similarly altered in both types; however, more genes displayed recurrent amplifications in IBCs. The percentage of genes whose mRNA expression correlated with CNAs was similar in both types for the gained genes, but ∼7-fold lower in IBCs for the lost genes. Integrated analysis identified 24 potential candidate IBC-specific genes. Their combined expression accurately distinguished IBCs and nIBCS in an independent validation set, and retained an independent prognostic value in a series of 1,781 nIBCs, reinforcing the hypothesis for a link with IBC aggressiveness. Consistent with the hyperproliferative and invasive phenotype of IBC these genes are notably involved in protein translation, cell cycle, RNA processing and transcription, metabolism, and cell migration. CONCLUSIONS: Our results suggest a higher genomic instability of IBC. We established the first repertory of DNA copy number alterations in this tumor, and provided a list of genes that may contribute to its aggressiveness and represent novel therapeutic targets.

  8. Characterization of copy number variation in genomic regions containing STR loci using array comparative genomic hybridization.

    Science.gov (United States)

    Repnikova, Elena A; Rosenfeld, Jill A; Bailes, Andrea; Weber, Cecilia; Erdman, Linda; McKinney, Aimee; Ramsey, Sarah; Hashimoto, Sayaka; Lamb Thrush, Devon; Astbury, Caroline; Reshmi, Shalini C; Shaffer, Lisa G; Gastier-Foster, Julie M; Pyatt, Robert E

    2013-09-01

    Short tandem repeat (STR) loci are commonly used in forensic casework, familial analysis for human identification, and for monitoring hematopoietic cell engraftment after bone marrow transplant. Unexpected genetic variation leading to sequence and length differences in STR loci can complicate STR typing, and presents challenges in casework interpretation. Copy number variation (CNV) is a relatively recently identified form of genetic variation consisting of genomic regions present at variable copy numbers within an individual compared to a reference genome. Large scale population studies have demonstrated that likely all individuals carry multiple regions with CNV of 1kb in size or greater in their genome. To date, no study correlating genomic regions containing STR loci with CNV has been conducted. In this study, we analyzed results from 32,850 samples sent for clinical array comparative genomic hybridization (CGH) analysis for the presence of CNV at regions containing the 13 CODIS (Combined DNA Index System) STR, and the Amelogenin X (AMELX) and Amelogenin Y (AMELY) loci. Thirty-two individuals with CNV involving STR loci on chromosomes 2, 4, 7, 11, 12, 13, 16, and 21, and twelve with CNV involving the AMELX/AMELY loci were identified. These results were correlated with data from publicly available databases housing information on CNV identified in normal populations and additional clinical cases. These collective results demonstrate the presence of CNV in regions containing 9 of the 13 CODIS STR and AMELX/Y loci. Further characterization of STR profiles within regions of CNV, additional cataloging of these variants in multiple populations, and contributing such examples to the public domain will provide valuable information for reliable use of these loci.

  9. Comparative Embryological Studies on Infertility of Interspecific Hybridizations Between Oryza sativa with Different Ploidy Levels and O.officinalis

    Institute of Scientific and Technical Information of China (English)

    FU Xue-lin; LU Yong-gen; LIU Xiang-dong; LI Jin-quan; ZHAO Xing-juan

    2009-01-01

    As maternal parents, diploid (L202-2x) and autotetraploid (L202-4x) of Oryza sativa cv. L202 were crossed with O. officinalis. Embryo development and fertilization in these two crosses were comparatively studied. There were no mature hybrid seeds obtained because all the hybridized spikelets died 30 days after pollination. The main reasons for no seed set were abnormal fertilization and development of the embryos and endosperms in the interspecific hybrids. There were double- fertilization, egg cell single-fertilization and non-fertilization in these crosses. Although 59.45% and 54.87% of hybrid embryos produced in the crosses of L202-2x/O. officinalis and L202-4x/O. officinalis, respectively, hybrid embryos ceased to develop or degenerated and plenty of free endosperm nuclei were in disaggregating state without developing cellular endosperms three days after pollination. Besides, some embryological differences in these two crosses were found, that is, the rate of double-fertilization and total rate of double- and single-fertilization in L202-2x/O. officinalis were higher than those in L202-4x/O. officinalis. The embryo and endosperm of hybrids developed more slowly, and embryos and free endosperm nuclei were more severely degenerated in L202-4x/O. officinalis than in L202-2x/O. officinalis. Five days after pollination, a few of embryos in L202-2x/O. officinalis developed into pear-shaped ones, however, embryos in L202-4x/O. officinalis were all degenerated. Therefore, it is more difficult to obtain interspecific hybrids by wide crosses between autotetraploid of O. sativa and O. officinalis.

  10. A comparative study of hybrid electric vehicle fuel consumption over diverse driving cycles

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    Environmental pollution and declining resources of fossil fuels in recent years,have increased demand for better fuel economy and less pollution for ground transportation.Among the alternative solutions provided by researchers in recent decades,hybrid electric vehicles consisted of an internal combustion engine and an electric motor have been considered as a promising solution in the short-term.In the present study,fuel economy characteristics of a parallel hybrid electric vehicle are investigated by using ...

  11. Dielectric property determination of hybrid Al2O3-filled MWCNT buckypaper by the rectangular cavity perturbation technique

    Science.gov (United States)

    Miao, Hsin-Yuan; Liu, Jih-Hsin; Saravanan, L.; Tsao, Che-Wei; Pan, Jui-Wen

    2015-04-01

    This study investigated the complex dielectric permittivity of freestanding multiwalled carbon nanotube buckypaper (MWCNT-BP) and a synthesized hybrid alumina-filled buckypaper (Al2O3-BP) composite with different alumina loadings (5-30 wt%). The non-destructive microwave transmission technique for complex permittivity determination involving cavity perturbation was employed to characterize a set of Al2O3-BP sheets. This was done by filling a rectangular cavity resonator with a standard dielectric Teflon sample and then performing permittivity measurements for the buckypaper (BP) samples in the X-band frequency range (7-12 GHz). Field-emission scanning electron microscopy (FESEM) was used to analyze the morphology of the MWCNT-BP and the alumina-loaded BP composites. DC electrical resistivity measurements clearly demonstrated conductor-insulator transition. The effect of alumina loadings on the dielectric properties of the synthesized hybrid Al2O3-BP sheet is discussed.

  12. A comparative study on preprocessing techniques in diabetic retinopathy retinal images: illumination correction and contrast enhancement.

    Science.gov (United States)

    Rasta, Seyed Hossein; Partovi, Mahsa Eisazadeh; Seyedarabi, Hadi; Javadzadeh, Alireza

    2015-01-01

    To investigate the effect of preprocessing techniques including contrast enhancement and illumination correction on retinal image quality, a comparative study was carried out. We studied and implemented a few illumination correction and contrast enhancement techniques on color retinal images to find out the best technique for optimum image enhancement. To compare and choose the best illumination correction technique we analyzed the corrected red and green components of color retinal images statistically and visually. The two contrast enhancement techniques were analyzed using a vessel segmentation algorithm by calculating the sensitivity and specificity. The statistical evaluation of the illumination correction techniques were carried out by calculating the coefficients of variation. The dividing method using the median filter to estimate background illumination showed the lowest Coefficients of variations in the red component. The quotient and homomorphic filtering methods after the dividing method presented good results based on their low Coefficients of variations. The contrast limited adaptive histogram equalization increased the sensitivity of the vessel segmentation algorithm up to 5% in the same amount of accuracy. The contrast limited adaptive histogram equalization technique has a higher sensitivity than the polynomial transformation operator as a contrast enhancement technique for vessel segmentation. Three techniques including the dividing method using the median filter to estimate background, quotient based and homomorphic filtering were found as the effective illumination correction techniques based on a statistical evaluation. Applying the local contrast enhancement technique, such as CLAHE, for fundus images presented good potentials in enhancing the vasculature segmentation.

  13. Comparative study of symmetric and asymmetric somatic hybridization between common wheat and Haynaldia villosa

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    Symmetric and asymmetric protoplast fusion between long term cell suspension-derived protoplasts of Triticum aestivum (cv. Jinan 177) and protoplasts of Haynaldia villosa prepared from one-year-old embryogeneric calli was performed by PEG method. In asymmetric fusion, donor calli were treated with gamma ray at a dose of 40, 60, 80 Gy (1.3 Gy/min) respectively and then used to isolate protoplasts. Results of morphological, cytological, biochemical (isozyme) and 5S rDNA spacer sequence analysis revealed that we obtained somatic hybrid lines at high frequency from both symmetric and asymmetric fusion. Hybrid plants were recovered from symmetric and low dose g-fusion combinations. GISH (genomic in situ hybridization) analysis proved exactly the existence of both parental chromosomes and the common occurrence of several kinds of translocation between them in the hybrid clones regenerated from symmetric and asymmetric fusion. And the elimination of donor DNA in hybrid clones regenerated from asymmetric fusion combinations was found to increase with the increasing gamma doses. It is concluded that transference and recombination of nuclear DNA can be achieved effectively by symmetric and asymmetric fusion, hybrids with small fragment translocation which are valuable in plant breeding can be obtained directly by asymmetric fusion.

  14. Comparative Analysis and Simulation of Diode Clamped & Cascaded H-Bridge Multilevel Inverter using SPWM Technique

    Directory of Open Access Journals (Sweden)

    Mohit Jain

    2015-01-01

    Full Text Available Multilevel inverters have become more popular over the years in high power medium voltage applications without the use of a transformer and with promise of less disturbance & reduced harmonic distortion. In this paper, two types of multilevel converter in three phase configuration, cascaded H-Bridge multilevel inverter (CMLI and diode clamped multilevel inverter (DCMLI of 5 and 7-level are modelled and compared in the case of feeding of a three phase squirrel cage induction motor. Here, carrier based sinusoidal pulse width modulation (SPWM technique is used as the modulation strategy. These modulation strategy include phase disposition technique (PD, phase opposition disposition technique (POD, and an alternative phase opposition disposition technique (APOD. A detailed study of the modulation technique has been carried out through MATLAB/SIMULINK for both multilevel converters and a comparative evaluation between DCMLI and CMLI using SPWM technique in terms of THD%.

  15. Comparative analysis of the mechanical and thermal properties of polyester hybrid composites reinforced by jute and glass fiber.

    Directory of Open Access Journals (Sweden)

    Braga, R. A

    2015-05-01

    Full Text Available This work describes the study to investigate and compare the mechanical and thermal properties of raw jute and glass fiber reinforced polyester hybrid composites. To improve the mechanical properties, jute fiber was hybridized with glass fiber. Polyester resin, jute and glass fibers were laminated in three weight ratios(77/23/0, 68/25/7 and 56/21/23 respectively to form composites. The tensile, flexural, impact, density, thermal and water absorption tests were carried out using hybrid composite samples. This study shows that the addition of jute fiber and glass fiber in polyester, increase the density, the impact energy, the tensile strength and the flexural strength, but decrease the loss mass in function of temperature and the water absorption. Morphological analysis was carried out to observe fracture behavior and fiber pull-out of the samples using scanning electron microscope.

  16. Use of models in large-area forest surveys: comparing model-assisted, model-based and hybrid estimation

    Directory of Open Access Journals (Sweden)

    Göran Ståhl

    2016-02-01

    Full Text Available This paper focuses on the use of models for increasing the precision of estimators in large-area forest surveys. It is motivated by the increasing availability of remotely sensed data, which facilitates the development of models predicting the variables of interest in forest surveys. We present, review and compare three different estimation frameworks where models play a core role: model-assisted, model-based, and hybrid estimation. The first two are well known, whereas the third has only recently been introduced in forest surveys. Hybrid inference mixes designbased and model-based inference, since it relies on a probability sample of auxiliary data and a model predicting the target variable from the auxiliary data..We review studies on large-area forest surveys based on model-assisted, modelbased, and hybrid estimation, and discuss advantages and disadvantages of the approaches. We conclude that no general recommendations can be made about whether model-assisted, model-based, or hybrid estimation should be preferred. The choice depends on the objective of the survey and the possibilities to acquire appropriate field and remotely sensed data. We also conclude that modelling approaches can only be successfully applied for estimating target variables such as growing stock volume or biomass, which are adequately related to commonly available remotely sensed data, and thus purely field based surveys remain important for several important forest parameters. Keywords: Design-based inference, Model-assisted estimation, Model-based inference, Hybrid inference, National forest inventory, Remote sensing, Sampling

  17. Hybrid models for hydrological forecasting: integration of data-driven and conceptual modelling techniques

    NARCIS (Netherlands)

    Corzo Perez, G.A.

    2009-01-01

    This book presents the investigation of different architectures of integrating hydrological knowledge and models with data-driven models for the purpose of hydrological flow forecasting. The models resulting from such integration are referred to as hybrid models. The book addresses the following top

  18. Hybrid models for hydrological forecasting: Integration of data-driven and conceptual modelling techniques

    NARCIS (Netherlands)

    Corzo Perez, G.A.

    2009-01-01

    This book presents the investigation of different architectures of integrating hydrological knowledge and models with data-driven models for the purpose of hydrological flow forecasting. The models resulting from such integration are referred to as hybrid models. The book addresses the following top

  19. Hybrid and Model-Based Iterative Reconstruction Techniques for Pediatric CT

    NARCIS (Netherlands)

    den Harder, Annemarie M.; Willemink, Martin J.; Budde, Ricardo P. J.; Schilham, Arnold M. R.; Leiner, Tim; de Jong, Pim A.

    2015-01-01

    OBJECTIVE. Radiation exposure from CT examinations should be reduced to a minimum in children. Iterative reconstruction (IR) is a method to reduce image noise that can be used to improve CT image quality, thereby allowing radiation dose reduction. This article reviews the use of hybrid and model-bas

  20. Hybrid models for hydrological forecasting: integration of data-driven and conceptual modelling techniques

    NARCIS (Netherlands)

    Corzo Perez, G.A.

    2009-01-01

    This book presents the investigation of different architectures of integrating hydrological knowledge and models with data-driven models for the purpose of hydrological flow forecasting. The models resulting from such integration are referred to as hybrid models. The book addresses the following

  1. Hybrid models for hydrological forecasting: Integration of data-driven and conceptual modelling techniques

    NARCIS (Netherlands)

    Corzo Perez, G.A.

    2009-01-01

    This book presents the investigation of different architectures of integrating hydrological knowledge and models with data-driven models for the purpose of hydrological flow forecasting. The models resulting from such integration are referred to as hybrid models. The book addresses the following

  2. Biological evaluation of zirconia/PEG hybrid materials synthesized via sol-gel technique.

    Science.gov (United States)

    Catauro, M; Papale, F; Bollino, F; Gallicchio, M; Pacifico, S

    2014-07-01

    The objective of the following study has been the synthesis via sol-gel and the characterization of novel organic-inorganic hybrid materials to be used in biomedical field. The prepared materials consist of an inorganic zirconia matrix containing as organic component the polyethylene glycol (PEG), a water-soluble polymer used in medical and pharmaceutical fields. Various hybrids have been synthesized changing the molar ratio between the organic and inorganic parts. Fourier transform spectroscopy suggests that the structure of the interpenetrating network is realized by hydrogen bonds between the Zr-OH group in the sol-gel intermediate species and both the terminal alcoholic group and ethereal oxygen atoms in the repeating units of polymer The amorphous nature of the gels has been ascertained by X-ray diffraction analysis. The morphology observation has been carried out by using the Scanning Electron Microscope and has confirmed that the obtained materials are nanostructurated hybrids. The bioactivity of the synthesized system has been shown by the formation of a hydroxyapatite layer on the surface of samples soaked in a fluid simulating the human blood plasma. The potential biocompatibility of hybrids has been assessed as performing indirect MTT cytotoxicity assay towards 3T3 cell line at 24, 48, and 72 h exposure times. Copyright © 2014. Published by Elsevier B.V.

  3. [Centric registration relation in dentate patients using bilateral manipulation--comparative analysis of three techniques].

    Science.gov (United States)

    De Paiva, H J; Bonfante, G; Lins do Valle, A; Bonachela, W C

    1989-01-01

    Three techniques of centric relation registration were compared using the "Jig" (LUCIA), the "Leaf-Gauge" (LONG JUNIOR) and an wax anterior guide. The casts were mounted and analysed in a Whip-Mix articulador. The results permitted to conclude that, from the statistical viewpoint, did not occurred significant differences among techniques and centric relation occurred in an area not in a point. Because of facility and quickness the technique advocated by LON JUNIOR is recommended.

  4. A comparative life cycle assessment of hybrid osmotic dilution desalination and established seawater desalination and wastewater reclamation processes.

    Science.gov (United States)

    Hancock, Nathan T; Black, Nathan D; Cath, Tzahi Y

    2012-03-15

    The purpose of this study was to determine the comparative environmental impacts of coupled seawater desalination and water reclamation using a novel hybrid system that consist of an osmotically driven membrane process and established membrane desalination technologies. A comparative life cycle assessment methodology was used to differentiate between a novel hybrid process consisting of forward osmosis (FO) operated in osmotic dilution (ODN) mode and seawater reverse osmosis (SWRO), and two other processes: a stand alone conventional SWRO desalination system, and a combined SWRO and dual barrier impaired water purification system consisting of nanofiltration followed by reverse osmosis. Each process was evaluated using ten baseline impact categories. It was demonstrated that from a life cycle perspective two hurdles exist to further development of the ODN-SWRO process: module design of FO membranes and cleaning intensity of the FO membranes. System optimization analysis revealed that doubling FO membrane packing density, tripling FO membrane permeability, and optimizing system operation, all of which are technically feasible at the time of this publication, could reduce the environmental impact of the hybrid ODN-SWRO process compared to SWRO by more than 25%; yet, novel hybrid nanofiltration-RO treatment of seawater and wastewater can achieve almost similar levels of environmental impact.

  5. Microarray comparative genomic hybridization detection of chromosomal imbalances in uterine cervix carcinoma

    Directory of Open Access Journals (Sweden)

    García José

    2005-07-01

    Full Text Available Abstract Background Chromosomal Comparative Genomic Hybridization (CGH has been applied to all stages of cervical carcinoma progression, defining a specific pattern of chromosomal imbalances in this tumor. However, given its limited spatial resolution, chromosomal CGH has offered only general information regarding the possible genetic targets of DNA copy number changes. Methods In order to further define specific DNA copy number changes in cervical cancer, we analyzed 20 cervical samples (3 pre-malignant lesions, 10 invasive tumors, and 7 cell lines, using the GenoSensor microarray CGH system to define particular genetic targets that suffer copy number changes. Results The most common DNA gains detected by array CGH in the invasive samples were located at the RBP1-RBP2 (3q21-q22 genes, the sub-telomeric clone C84C11/T3 (5ptel, D5S23 (5p15.2 and the DAB2 gene (5p13 in 58.8% of the samples. The most common losses were found at the FHIT gene (3p14.2 in 47% of the samples, followed by deletions at D8S504 (8p23.3, CTDP1-SHGC- 145820 (18qtel, KIT (4q11-q12, D1S427-FAF1 (1p32.3, D9S325 (9qtel, EIF4E (eukaryotic translation initiation factor 4E, 4q24, RB1 (13q14, and DXS7132 (Xq12 present in 5/17 (29.4% of the samples. Conclusion Our results confirm the presence of a specific pattern of chromosomal imbalances in cervical carcinoma and define specific targets that are suffering DNA copy number changes in this neoplasm.

  6. Analysis of comparative genomic hybridization and loss of heterozygosity in 43 primary gastric carcinomas

    Institute of Scientific and Technical Information of China (English)

    王琦; 王柏秋; 关新元; 高慧; 程慧; 张岂凡; 黄承斌; 李璞; 傅松滨

    2003-01-01

    Objective To investigate common chromosomal changes and the LOH frequency of microsatellite loci in primary gastric cancer samples in order to locate the deleted regions in which human gastric cancer related genes might exist.Methods Comparative genomic hybridization (CGH) was used to define global chromosomal aberrations in 43 primary gastric tumors. Based on the results of CGH, analysis of loss of heterozygosity (LOH) was performed in chromosome 19 in which the loss was first discovered in the gastric cancers. The PCR-based approach was used to investigate 22 loci, which are spaced at 1.1-10.9 cM intervals throughout chromosome 19. The amplified PCR fragments were subjected to electrophoresis in PAGE gel and analyzed with GenescanTM and GenotyperTM. Results CGH analysis revealed gains in chromosome 3p(8/43), 8q(8/43), 20 [20 (9/43), 20p(7/43), 20q(4/43)], 12q(16/43), 13q(12/43) and losses in 19 [19 (15/43)], 7 [17 (8/43), 17p (10/43)], 16 (10/43) and 1p (11/43). Among the 43 evaluated samples, the most frequent LOH was detected at locus D19S571 (27.81%). Conclusions The tumorigenesis of gastric cancer includes several chromosomal changes. The aberration of chromosome 19 was the first common change founded in gastric cancer. The region near the D19S571 might harbor potential genes related to the tumorigenesis of gastric cancer.

  7. Microarray comparative genomic hybridization detection of chromosomal imbalances in uterine cervix carcinoma

    Science.gov (United States)

    Hidalgo, Alfredo; Baudis, Michael; Petersen, Iver; Arreola, Hugo; Piña, Patricia; Vázquez-Ortiz, Guelaguetza; Hernández, Dulce; González, José; Lazos, Minerva; López, Ricardo; Pérez, Carlos; García, José; Vázquez, Karla; Alatorre, Brenda; Salcedo, Mauricio

    2005-01-01

    Background Chromosomal Comparative Genomic Hybridization (CGH) has been applied to all stages of cervical carcinoma progression, defining a specific pattern of chromosomal imbalances in this tumor. However, given its limited spatial resolution, chromosomal CGH has offered only general information regarding the possible genetic targets of DNA copy number changes. Methods In order to further define specific DNA copy number changes in cervical cancer, we analyzed 20 cervical samples (3 pre-malignant lesions, 10 invasive tumors, and 7 cell lines), using the GenoSensor microarray CGH system to define particular genetic targets that suffer copy number changes. Results The most common DNA gains detected by array CGH in the invasive samples were located at the RBP1-RBP2 (3q21-q22) genes, the sub-telomeric clone C84C11/T3 (5ptel), D5S23 (5p15.2) and the DAB2 gene (5p13) in 58.8% of the samples. The most common losses were found at the FHIT gene (3p14.2) in 47% of the samples, followed by deletions at D8S504 (8p23.3), CTDP1-SHGC- 145820 (18qtel), KIT (4q11-q12), D1S427-FAF1 (1p32.3), D9S325 (9qtel), EIF4E (eukaryotic translation initiation factor 4E, 4q24), RB1 (13q14), and DXS7132 (Xq12) present in 5/17 (29.4%) of the samples. Conclusion Our results confirm the presence of a specific pattern of chromosomal imbalances in cervical carcinoma and define specific targets that are suffering DNA copy number changes in this neoplasm. PMID:16004614

  8. Genetic diversity of Streptococcus suis isolates as determined by comparative genome hybridization

    Directory of Open Access Journals (Sweden)

    Thi Hoa

    2011-07-01

    Full Text Available Abstract Background Streptococcus suis is a zoonotic pathogen that causes infections in young piglets. S. suis is a heterogeneous species. Thirty-three different capsular serotypes have been described, that differ in virulence between as well as within serotypes. Results In this study, the correlation between gene content, serotype, phenotype and virulence among 55 S. suis strains was studied using Comparative Genome Hybridization (CGH. Clustering of CGH data divided S. suis isolates into two clusters, A and B. Cluster A isolates could be discriminated from cluster B isolates based on the protein expression of extracellular factor (EF. Cluster A contained serotype 1 and 2 isolates that were correlated with virulence. Cluster B mainly contained serotype 7 and 9 isolates. Genetic similarity was observed between serotype 7 and serotype 2 isolates that do not express muramidase released protein (MRP and EF (MRP-EF-, suggesting these isolates originated from a common founder. Profiles of 25 putative virulence-associated genes of S. suis were determined among the 55 isolates. Presence of all 25 genes was shown for cluster A isolates, whereas cluster B isolates lacked one or more putative virulence genes. Divergence of S. suis isolates was further studied based on the presence of 39 regions of difference. Conservation of genes was evaluated by the definition of a core genome that contained 78% of all ORFs in P1/7. Conclusions In conclusion, we show that CGH is a valuable method to study distribution of genes or gene clusters among isolates in detail, yielding information on genetic similarity, and virulence traits of S. suis isolates.

  9. Array comparative genomic hybridization analysis of Trichoderma reesei strains with enhanced cellulase production properties

    Directory of Open Access Journals (Sweden)

    Penttilä Merja

    2010-07-01

    Full Text Available Abstract Background Trichoderma reesei is the main industrial producer of cellulases and hemicellulases that are used to depolymerize biomass in a variety of biotechnical applications. Many of the production strains currently in use have been generated by classical mutagenesis. In this study we characterized genomic alterations in high-producing mutants of T. reesei by high-resolution array comparative genomic hybridization (aCGH. Our aim was to obtain genome-wide information which could be utilized for better understanding of the mechanisms underlying efficient cellulase production, and would enable targeted genetic engineering for improved production of proteins in general. Results We carried out an aCGH analysis of four high-producing strains (QM9123, QM9414, NG14 and Rut-C30 using the natural isolate QM6a as a reference. In QM9123 and QM9414 we detected a total of 44 previously undocumented mutation sites including deletions, chromosomal translocation breakpoints and single nucleotide mutations. In NG14 and Rut-C30 we detected 126 mutations of which 17 were new mutations not documented previously. Among these new mutations are the first chromosomal translocation breakpoints identified in NG14 and Rut-C30. We studied the effects of two deletions identified in Rut-C30 (a deletion of 85 kb in the scaffold 15 and a deletion in a gene encoding a transcription factor on cellulase production by constructing knock-out strains in the QM6a background. Neither the 85 kb deletion nor the deletion of the transcription factor affected cellulase production. Conclusions aCGH analysis identified dozens of mutations in each strain analyzed. The resolution was at the level of single nucleotide mutation. High-density aCGH is a powerful tool for genome-wide analysis of organisms with small genomes e.g. fungi, especially in studies where a large set of interesting strains is analyzed.

  10. Genome sequence of Cronobacter sakazakii BAA-894 and comparative genomic hybridization analysis with other Cronobacter species.

    Directory of Open Access Journals (Sweden)

    Eva Kucerova

    Full Text Available BACKGROUND: The genus Cronobacter (formerly called Enterobacter sakazakii is composed of five species; C. sakazakii, C. malonaticus, C. turicensis, C. muytjensii, and C. dublinensis. The genus includes opportunistic human pathogens, and the first three species have been associated with neonatal infections. The most severe diseases are caused in neonates and include fatal necrotizing enterocolitis and meningitis. The genetic basis of the diversity within the genus is unknown, and few virulence traits have been identified. METHODOLOGY/PRINCIPAL FINDINGS: We report here the first sequence of a member of this genus, C. sakazakii strain BAA-894. The genome of Cronobacter sakazakii strain BAA-894 comprises a 4.4 Mb chromosome (57% GC content and two plasmids; 31 kb (51% GC and 131 kb (56% GC. The genome was used to construct a 387,000 probe oligonucleotide tiling DNA microarray covering the whole genome. Comparative genomic hybridization (CGH was undertaken on five other C. sakazakii strains, and representatives of the four other Cronobacter species. Among 4,382 annotated genes inspected in this study, about 55% of genes were common to all C. sakazakii strains and 43% were common to all Cronobacter strains, with 10-17% absence of genes. CONCLUSIONS/SIGNIFICANCE: CGH highlighted 15 clusters of genes in C. sakazakii BAA-894 that were divergent or absent in more than half of the tested strains; six of these are of probable prophage origin. Putative virulence factors were identified in these prophage and in other variable regions. A number of genes unique to Cronobacter species associated with neonatal infections (C. sakazakii, C. malonaticus and C. turicensis were identified. These included a copper and silver resistance system known to be linked to invasion of the blood-brain barrier by neonatal meningitic strains of Escherichia coli. In addition, genes encoding for multidrug efflux pumps and adhesins were identified that were unique to C. sakazakii

  11. Comparative study of retinal vessel segmentation based on global thresholding techniques.

    Science.gov (United States)

    Mapayi, Temitope; Viriri, Serestina; Tapamo, Jules-Raymond

    2015-01-01

    Due to noise from uneven contrast and illumination during acquisition process of retinal fundus images, the use of efficient preprocessing techniques is highly desirable to produce good retinal vessel segmentation results. This paper develops and compares the performance of different vessel segmentation techniques based on global thresholding using phase congruency and contrast limited adaptive histogram equalization (CLAHE) for the preprocessing of the retinal images. The results obtained show that the combination of preprocessing technique, global thresholding, and postprocessing techniques must be carefully chosen to achieve a good segmentation performance.

  12. Comparing Kinematic Characteristics of Two Snatch and Push Techniques in Male Weightlifters

    OpenAIRE

    Seyed Ehsan Jahed; Alireza Rahimi; Amir Sarshin

    2016-01-01

    This study is aimed to compare Kinematic characteristics of two snatch and push techniques. 16 male weightlifters of Markazi Province (in the age of years old, in weights of kg) participated in this study and runthe considered technique was filmed with frequency rate of 240 FPS. Weightlifters divided in two 8- person groups_snatch group and push groups_ and with 80% power run the technique 3 times. Data related to kinematic parameters of lower limb in two push and snatch techniques were analy...

  13. Comparative Study of Retinal Vessel Segmentation Based on Global Thresholding Techniques

    Directory of Open Access Journals (Sweden)

    Temitope Mapayi

    2015-01-01

    Full Text Available Due to noise from uneven contrast and illumination during acquisition process of retinal fundus images, the use of efficient preprocessing techniques is highly desirable to produce good retinal vessel segmentation results. This paper develops and compares the performance of different vessel segmentation techniques based on global thresholding using phase congruency and contrast limited adaptive histogram equalization (CLAHE for the preprocessing of the retinal images. The results obtained show that the combination of preprocessing technique, global thresholding, and postprocessing techniques must be carefully chosen to achieve a good segmentation performance.

  14. Comparative susceptibility of Channel Catfish, Blue Catfish, and their hybrid cross to experimental challenge with Bolbophorus damnificus (Digenea: Bolbophoridae) cercariae.

    Science.gov (United States)

    Griffin, Matt J; Reichley, Stephen R; Khoo, Lester H; Ware, Cynthia; Greenway, Terrence E; Mischke, Charles C; Wise, David J

    2014-06-01

    The digenetic trematode Bolbophorus damnificus has been implicated in significant losses in catfish aquaculture since the late 1990s. The complex life cycle sequentially involves the American white pelican Pelecanus erythrorhynchos, the marsh rams horn snail Planorbella trivolvis, and Channel Catfish Ictalurus punctatus. Research supports anecdotal reports from the industry, suggesting that the hybrid of Channel Catfish×Blue Catfish I. furcatus is less susceptible to disease agents that have been historically prohibitive to Channel Catfish production, namely the gram-negative bacteria Edwardsiella ictaluri and Flavobacterium columnare, as well as the myxozoan parasite Henneguya ictaluri. This current research compared the susceptibility of Channel Catfish, Blue Catfish, and their hybrid cross to an experimental challenge by B. damnificus. Fish were exposed to 0, 100, 200, and 400 B. damnificus cercariae per fish, and the numbers of metacercariae per fish were determined 14 d postchallenge. Metacercariae were recovered from all challenged fish. There were no significant differences among fish groups challenged with the same dose, suggesting Channel and Blue Catfish and their hybrid are comparably susceptible to B. damnificus infection. As such, it is recommended that producers raising hybrid catfish remain diligent in controlling populations of the snail intermediate host to prevent production losses attributed to B. damnificus, especially when loafing pelicans have been observed at the aquaculture operation.

  15. Energy Spectrum of Ultra-High Energy Cosmic Rays Observed with the Telescope Array Using a Hybrid Technique

    CERN Document Server

    Abu-Zayyad, T; Allen, M; Anderson, R; Azuma, R; Barcikowski, E; Belz, J W; Bergman, D R; Blake, S A; Cady, R; Cheon, B G; Chiba, J; Chikawa, M; Cho, E J; Cho, W R; Fujii, H; Fujii, T; Fukuda, T; Fukushima, M; Hanlon, W; Hayashi, K; Hayashi, Y; Hayashida, N; Hibino, K; Hiyama, K; Honda, K; Iguchi, T; Ikeda, D; Ikuta, K; Inoue, N; Ishii, T; Ishimori, R; Ito, H; Ivanov, D; Iwamoto, S; Jui, C C H; Kadota, K; Kakimoto, F; Kalashev, O; Kanbe, T; Kasahara, K; Kawai, H; Kawakami, S; Kawana, S; Kido, E; Kim, H B; Kim, H K; Kim, J H; Kitamoto, K; Kitamura, S; Kitamura, Y; Kobayashi, K; Kobayashi, Y; Kondo, Y; Kuramoto, K; Kuzmin, V; Kwon, Y J; Lan, J; Lim, S I; Lundquist, J P; Machida, S; Martens, K; Matsuda, T; Matsuura, T; Matsuyama, T; Matthews, J N; Minamino, M; Miyata, K; Murano, Y; Myers, I; Nagasawa, K; Nagataki, S; Nakamura, T; Nam, S W; Nonaka, T; Ogio, S; Ohnishi, M; Ohoka, H; Oki, K; Oku, D; Okuda, T; Ono, M; Oshima, A; Ozawa, S; Park, I H; Pshirkov, M S; Rodriguez, D C; Roh, S Y; Rubtsov, G; Ryu, D; Sagawa, H; Sakurai, N; Sampson, A L; Scott, L M; Shah, P D; Shibata, F; Shibata, T; Shimodaira, H; Shin, B K; Shin, J I; Shirahama, T; Smith, J D; Sokolsky, P; Springer, R W; Stokes, B T; Stratton, S R; Stroman, T; Suzuki, S; Takahashi, Y; Takeda, M; Taketa, A; Takita, M; Tameda, Y; Tanaka, H; Tanaka, K; Tanaka, M; Thomas, S B; Thomson, G B; Tinyakov, P; Tkachev, I; Tokuno, H; Tomida, T; Troitsky, S; Tsunesada, Y; Tsutsumi, K; Tsuyuguchi, Y; Uchihori, Y; Udo, S; Ukai, H; Urban, F; Vasiloff, G; Wada, Y; Wong, T; Yamakawa, Y; Yamane, R; Yamaoka, H; Yamazaki, K; Yang, J; Yoneda, Y; Yoshida, S; Yoshii, H; Zhou, X; Zollinger, R; Zundel, Z

    2013-01-01

    We measure the spectrum of cosmic rays with energies greater than $10^{18.2}$ eV with the Fluorescence Detectors (FDs) and the Surface Detectors (SDs) of the Telescope Array Experiment using the data taken in our first 2.3-year observation from May 27 2008 to September 7 2010. A hybrid air shower reconstruction technique is employed to improve accuracies in determination of arrival directions and primary energies of cosmic rays using both FD and SD data. The energy spectrum presented here is in agreement with our previously published spectra and the HiRes results.

  16. ADAPTING HYBRID MACHINE TRANSLATION TECHNIQUES FOR CROSS-LANGUAGE TEXT RETRIEVAL SYSTEM

    Directory of Open Access Journals (Sweden)

    P. ISWARYA

    2017-03-01

    Full Text Available This research work aims in developing Tamil to English Cross - language text retrieval system using hybrid machine translation approach. The hybrid machine translation system is a combination of rule based and statistical based approaches. In an existing word by word translation system there are lot of issues and some of them are ambiguity, Out-of-Vocabulary words, word inflections, and improper sentence structure. To handle these issues, proposed architecture is designed in such a way that, it contains Improved Part-of-Speech tagger, machine learning based morphological analyser, collocation based word sense disambiguation procedure, semantic dictionary, and tense markers with gerund ending rules, and two pass transliteration algorithm. From the experimental results it is clear that the proposed Tamil Query based translation system achieves significantly better translation quality over existing system, and reaches 95.88% of monolingual performance.

  17. A Comparative Analysis of Exemplar Based and Wavelet Based Inpainting Technique

    Directory of Open Access Journals (Sweden)

    Vaibhav V Nalawade

    2012-06-01

    Full Text Available Image inpainting is the process of filling in of missing region so as to preserve its overall continuity. Image inpainting is manipulation and modification of an image in a form that is not easily detected. Digital image inpainting is relatively new area of research, but numerous and different approaches to tackle the inpainting problem have been proposed since the concept was first introduced. This paper compares two separate techniques viz, Exemplar based inpainting technique and Wavelet based inpainting technique, each portraying a different set of characteristics. The algorithms analyzed under exemplar technique are large object removal by exemplar based inpainting technique (Criminisi’s and modified exemplar (Cheng. The algorithm analyzed under wavelet is Chen’s visual image inpainting method. A number of examples on real and synthetic images are demonstrated to compare the results of different algorithms using both qualitative and quantitative parameters.

  18. Image Enhancement Techniques for Quantitative Investigations of Morphological Features in Cometary Comae: A Comparative Study

    CERN Document Server

    Samarasinha, Nalin

    2014-01-01

    Many cometary coma features are only a few percent above the ambient coma (i.e., the background) and therefore coma enhancement techniques are needed to discern the morphological structures present in cometary comae. A range of image enhancement techniques widely used by cometary scientists is discussed by categorizing them and carrying out a comparative analysis. The enhancement techniques and the corresponding characteristics are described in detail and the respective mathematical representations are provided. As the comparative analyses presented in this paper make use of simulated images with known coma features, the feature identifications as well as the artifacts caused by enhancement provide an objective and definitive assessment of the various techniques. Examples are provided which highlight contrasting capabilities of different techniques to pick out qualitatively distinct features of widely different strengths and spatial scales. On account of this as well as serious image artifacts and spurious fe...

  19. Application of hybrid microwave thermal extraction techniques for mulberry root bark

    OpenAIRE

    Wang Cheng-Chi; Yau Her-Terng

    2013-01-01

    The main focus of this paper is the extraction of compounds from the mulberry root bark using a hybrid microwave thermal process. The shearing mechanism and an integrated circulation system, which increases the rate of contact between the solvent and extractive, are studied. The results are analyzed by the Taguchi method and verified by high performance liquid chromatography. Furthermore, the optimal operating parameters of the extraction of mulberry root b...

  20. Development and Application of Nucleic Acid Hybridization Techniques to Arbovirus Surveillance and Diagnosis.

    Science.gov (United States)

    1986-11-04

    The pVV9 and pWV7 probes were more specific for dengue-2 RNA, but-o ::e cross reaction with other dengue serotypes was noted. ,PdUc1biLity Codes S...contained dengue specific inserts that strongly hybridized to dengue-2 RMA and to the RNA of other dengue serotypes to varying degrees (Figure 6). The pVVl

  1. FPGA Techniques Based New Hybrid Modulation Strategies for Voltage Source Inverters

    OpenAIRE

    Sudha, L. U.; J. Baskaran; Elankurisil, S. A.

    2015-01-01

    This paper corroborates three different hybrid modulation strategies suitable for single-phase voltage source inverter. The proposed method is formulated using fundamental switching and carrier based pulse width modulation methods. The main tale of this proposed method is to optimize a specific performance criterion, such as minimization of the total harmonic distortion (THD), lower order harmonics, switching losses, and heat losses. The proposed method is articulated using fundamental switch...

  2. Application of DNA hybridization techniques in the assessment of diarrheal disease among refugess in Thailand. [Shigella; Escherichia coli; Campylobacter; Cryptosporidium

    Energy Technology Data Exchange (ETDEWEB)

    Taylor, D.N.; Echeverria, P.; Pitarangsi, C.; Seriwatana, J.; Sethabutr, O.; Bodhidatta, L.; Brown, C.; Herrmann, J.E.; Blacklow, N.R.

    1988-01-01

    The epidemiology and etiology of acute diarrheal disease were determined in a Hmong refugee camp on the Thai-Laotian border from April 11 to May 14, 1985. DNA hybridization techniques were used to detect Shigella species, enteroinvasive Escherichia coli, and enterotoxigenic E. coli. A monoclonal enzyme-linked immunosorbent assay was used to detect rotavirus, and standard microbiology was used to detect other enteropathogens. The age-specific diarrheal disease rates were 47 episodes per month per 1000 children less than five years old and 113 episodes per month per 1000 children less than one year old. Rotavirus, enterotoxigenic E. coli, Campylobacter, and Cryptosporidium were the predominant pathogens in children less than two years old. The DNA probe hybridized with 94% of 31 specimens identified as enterotoxigenic E. coli by the standard assays and with none of the specimens in which the standard assays were negative. The probe for Shigella and enteroinvasive E. coli hybridized in eight of 10 stools that contained Shigella and four of 314 stools from which Shigella and enteroinvasive E. coli were not isolated. The use of DNA probes allows specimens to be collected in remote areas with a minimum amount of equipment and technical expertise so that they can be easily transported to a central laboratory for further processing.

  3. Screening of FOXP3-interacted proteins by yeast two-hybrid technique

    Institute of Scientific and Technical Information of China (English)

    Zhou Lina; Wu Jun; Luo Gaoxing; He Weifeng; Chen Xiwei; Bo Ganping; Yuan Shunzong; Zhang Xiaorong; Hu Xiaohong

    2008-01-01

    Objective: To screen the proteins interacting with the Treg specification factor forkhead box protein P3 (FOXP3) by yeast two-hybrid system. Methods: Human FOXP3 gene was amplified by nest RT-PCR from peripheral blood mononuclear cells (PBMC) and inserted into plasmid pGBKT7 to construct the bait vector, then the self-activation and toxicity of the bait vector in host yeast strain AH109 were observed. Thereafter, a human liver cDNA library was screened by the bait vector. The positive clones were selected out by nutrient-deficient culture and back-hybridizing. The sequences from the candidate positive clones were blasted and analyzed by bioinformatics methods. Results: The constructed bait vector encoding FOXP3 was found no self-activation and toxicity in yeast AH109. Three proteins which interacted with FOXP3, including tumor protein D52, splicing factor 3b subunit 1 and hypothetical protein, were identified. Conclusion: Three new candidate proteins interacting with FOXP3 are selected out by this yeast two-hybrid system and library, which may facilitate the further study of FOXP3 in Treg.

  4. Comparative growth and viability of hybrids between two populations of Chinese shrimp (Fennropenaeus chinensis)

    Institute of Scientific and Technical Information of China (English)

    TIAN Yi; KONG Jie; YANG Cuihua

    2006-01-01

    Fenneropenaeus chinensis is confined to the Yellow Sea and Bohai Sea in China and the West Coast of the Korean Peninsula. Intra- and intercross populations were produced between Rushany (YP) and Korean (KN) populations. Seven traits were recorded. The heterosis of hybrids was computed and comparison between treatments was performed by ANOVA. At the fourth month after post-larvae, six indexes of growth trait and viability showed a range of heterosis, ranging from 0.514% to 14.950%. At the fifth month after post-larvae, six indexes of growth trait and viability ranged from -9.000% to 19.090%. The negative heterosis was observed in CL, HST and viability. The heterosis of KN♀×YP♂ tended generally to increase as the age of the Chinese shrimp increased while the heterosis of YP♀×KN♂ tended to decrease. The results indicated that the viability of reciprocal hybrids were not significantly different (P>0.05) from their parents during the experiment. The result of ANOVA indicated that the F1 hybrids were significantly different (P<0.05) in WST and TW at the fourth month. The multiple comparisons of LSD test indicated that the hybrids of YP♀×KN♂ were significantly different (P<0.05) from their parents in TW. The hybrids of YP♀×KN♂ were significantly different (P<0.05) from the other three combinations in WST. At the fifth months, the F1 hybrids had significant difference (P<0.05) in body weight while other traits showed no significant differences (P>0.05) from their parents. The multiple comparisons of LSD test indicated that the hybrids of KN♀×YP♂ were significantly different (P<0.05) from the KN parents in TW. The results indicate that in experimental conditions, the F1 hybrids created from two populations of Chinese shrimp showed a certain level of heterosis for growth performance and viability. The crossing scheme may improve growth performance and viability in Chinese shrimp, but the improvement may be limited because effective

  5. TO COMPARE THE EFFECTIVENESS OF MYOFASCIAL RELEASE TECHNIQUE VERSUS POSITIONAL RELEASE TECHNIQUE WITH LASER IN PATIENTS WITH UNILATERAL TRAPEZITIS

    Directory of Open Access Journals (Sweden)

    Ravish

    2014-02-01

    Full Text Available BACKGROUND AND OBJECTIVE: Trapezius pain is the classic stress pain and it is the most common musculoskeletal disorder. It is usually caused by placing too much stress or strain over the trapezius muscle. The upper trapezius muscle is designated as postural muscle and it is highly susceptible to overuse. Trapezius muscles help with the function of neck rotation, side bending and extension. Tightness in the muscles can decrease the range of motion of the neck. The decrease in motion can negatively affect the mobility of the cervical joints. Limited range of motion creates an increase in soft tissue tightness, with an ensuing pain-spasm cycle which can be difficult to break. Physiotherapy techniques like myofascial release technique and Positional release therapy has been proposed as an adjunct to conventional therapy to treat trapezitis. Giving myofascial release technique and positional release therapy along with LASER and exercises improves the cervical range of motion and relieves pain and enhances quality of life in the patient with trapezitis. Hence this study is aimed to determine the effect of myofascial release technique and positional release therapy in trapezitis. STUDY DESIGN: Comparative study design SETTING: Out Patient Department of Orthopedics, Kempegowda Institute of Medical Science Hospital and Research Center, Bangalore. Out Patient Department of Physiotherapy, Kempegowda Institute of Physiotherapy, Bangalore.

  6. Comparative study of symmetric and asymmetric somatic hybridization between common wheat and Haynaldia villosa

    Institute of Scientific and Technical Information of China (English)

    ZHOU; Aifen

    2001-01-01

    [1]Li, Z. Y., Xia, G. M., Chen, H. M., Somatic embryogenesis and plant regeneration from protoplasts isolated from embryo-genic cell suspensions of wheat (Triticum aestivum L.), Plant Cell, Tissue and Organ Culture, 1992, 98: 79-85.[2]Zhou, A. F., Xia, G. M., Chen, H. M., Asymmetric somatic hybridization between Triticum aestivum and Haynaldia vil-losa, Science in China, Ser. C, 1996, 39(6): 617-626.[3]Zhou, A. F., Xia, G. M., Chen, H. M. et al., Effect of 60Co-g radiation on calli of Haynaldia villosa, Chinese J. of Bio-technology, 1996, 12(Supplement): 127-130.[4]Xia, G. M., Chen, H. M., Wang, H., Somatic hybridization and regeneration capacity complementation between common wheat (T. aestivum) and Agropyron elongatum. J. Shandong University, 1995, 30(3): 325-330.[5]Xia, G. M., Chen, H. M., Plant regeneration from intergeneric somatic hybridization between Triticum aestivum L. and Leymus chinensis (Trin.)Tzvel., Plant Science, 1996, 120: 197-203.[6]Doyle, J. J., Doyle, J. L., Isolation of plant DNA from fresh tissue, Focus, 1990, 12: 13-15.[7]Zhou, A. F., Xu, C. H., Xiang, F. N. et al., Study on the identification of somatic hybrids by PCR with 5S rDNA spacer se-quence primers, Chinese J. of Biotechnology, 1999, 15(4): 529-532.[8]Ma, J. X., Zhou, R. H., Jia, J. Z. et al., Identification of wheat-Haynaldia villosa substitution lines conferring resistance to powdery mildew using genomic in situ hybridization (GISH) and RFLP markers, Acta Genetica Sinica, 1997, 24(5): 447-452.[9]Zhou, R. H., Jia, J. Z., Dong, Y. C. et al., Characterization of progenies of Triticum aestivum-Psathyrostachys juncea de-rivatives by using genomic in-situ hybridization, Science in China, Ser. C, 1997, 40(6): 657-664.[10]Parokonny, A. S., Kenton, A. Y., Gleba, Y. Y. et al., Genomic reorganization in Nicotiana asymmetric somatic hybrids analysed by in situ hybridization. Plant Journal, 1992, 2: 863-874.[11]Piastuch, W. C., Bates, G. W

  7. Comparative efficiency evaluation of buck and hybrid buck DC-DC converters for automotive applications

    DEFF Research Database (Denmark)

    Pelan, Ovidiu; Cornea, Octavian; Muntean, Nicolae

    2014-01-01

    This paper presents and discusses design considerations and efficiency investigation of a conventional step-down and a hybrid switched-capacitor DC-DC converter. Three MOSFETs with low on-resistance have been tested for each converter in order to find the most adequate switch for this application...

  8. Comparative cost analysis of hybrid striped bass fingerling production in ponds and tanks

    Science.gov (United States)

    Year-round production of hybrid striped bass (female white bass Morone chrysops×male striped bass M. saxatilis) fingerlings would allow food fish growers to sell their product throughout the year, which would improve the consistency of market supply and cash flow for the farm. However, pond producti...

  9. Comparing an evolved finite state controller for hybrid system to a lookahead design

    DEFF Research Database (Denmark)

    Dupuis, Jean-Francois; Fan, Zhun

    2010-01-01

    This paper presents a comparison of an evolutionary methodology for evolving finite state controller to the lookahead controller for hybrid system. To illustrate the advantages and disadvantages of both controllers two case studies, namely a two-tanks system and a single-input double-output DC...

  10. A hybrid stock trading framework integrating technical analysis with machine learning techniques

    Directory of Open Access Journals (Sweden)

    Rajashree Dash

    2016-03-01

    Full Text Available In this paper, a novel decision support system using a computational efficient functional link artificial neural network (CEFLANN and a set of rules is proposed to generate the trading decisions more effectively. Here the problem of stock trading decision prediction is articulated as a classification problem with three class values representing the buy, hold and sell signals. The CEFLANN network used in the decision support system produces a set of continuous trading signals within the range 0–1 by analyzing the nonlinear relationship exists between few popular technical indicators. Further the output trading signals are used to track the trend and to produce the trading decision based on that trend using some trading rules. The novelty of the approach is to engender the profitable stock trading decision points through integration of the learning ability of CEFLANN neural network with the technical analysis rules. For assessing the potential use of the proposed method, the model performance is also compared with some other machine learning techniques such as Support Vector Machine (SVM, Naive Bayesian model, K nearest neighbor model (KNN and Decision Tree (DT model.

  11. Flexible Riser Monitoring Using Hybrid Magnetic/Optical Strain Gage Techniques through RLS Adaptive Filtering

    Directory of Open Access Journals (Sweden)

    Pipa Daniel

    2010-01-01

    Full Text Available Flexible riser is a class of flexible pipes which is used to connect subsea pipelines to floating offshore installations, such as FPSOs (floating production/storage/off-loading unit and SS (semisubmersible platforms, in oil and gas production. Flexible risers are multilayered pipes typically comprising an inner flexible metal carcass surrounded by polymer layers and spiral wound steel ligaments, also referred to as armor wires. Since these armor wires are made of steel, their magnetic properties are sensitive to the stress they are subjected to. By measuring their magnetic properties in a nonintrusive manner, it is possible to compare the stress in the armor wires, thus allowing the identification of damaged ones. However, one encounters several sources of noise when measuring electromagnetic properties contactlessly, such as movement between specimen and probe, and magnetic noise. This paper describes the development of a new technique for automatic monitoring of armor layers of flexible risers. The proposed approach aims to minimize these current uncertainties by combining electromagnetic measurements with optical strain gage data through a recursive least squares (RLSs adaptive filter.

  12. Comparative study of two linearization methods for time intervals generation of SVPWM technique

    Directory of Open Access Journals (Sweden)

    Khaled N. Faris

    2016-12-01

    In this paper a comparative study for two linearization methods are carried out for generating the time intervals of SVPWM technique. The proposed linearization methods achieve a minimum computational time rather than the trigonometric sine function which is considered the base for the time interval calculations of the SVPWM technique. The first linearization method is based on the first order equation, and the second method is the (Takagi–Sugeno fuzzy modeling system. The comparative study includes the accuracy of the two models, also a simulation model is carried out for current THD estimation using the two proposed methods compared with the current THD generated by SVPWM based on the trigonometric sine function.

  13. Artifact reduction in multichannel pervasive EEG using hybrid WPT-ICA and WPT-EMD signal decomposition techniques

    CERN Document Server

    Bono, Valentina; Das, Saptarshi; Maharatna, Koushik

    2014-01-01

    In order to reduce the muscle artifacts in multi-channel pervasive Electroencephalogram (EEG) signals, we here propose and compare two hybrid algorithms by combining the concept of wavelet packet transform (WPT), empirical mode decomposition (EMD) and Independent Component Analysis (ICA). The signal cleaning performances of WPT-EMD and WPT-ICA algorithms have been compared using a signal-to-noise ratio (SNR)-like criterion for artifacts. The algorithms have been tested on multiple trials of four different artifact cases viz. eye-blinking and muscle artifacts including left and right hand movement and head-shaking.

  14. Gene expression profiles in squamous cell cervical carcinoma using array-based comparative genomic hybridization analysis.

    Science.gov (United States)

    Choi, Y-W; Bae, S M; Kim, Y-W; Lee, H N; Kim, Y W; Park, T C; Ro, D Y; Shin, J C; Shin, S J; Seo, J-S; Ahn, W S

    2007-01-01

    Our aim was to identify novel genomic regions of interest and provide highly dynamic range information on correlation between squamous cell cervical carcinoma and its related gene expression patterns by a genome-wide array-based comparative genomic hybridization (array-CGH). We analyzed 15 cases of cervical cancer from KangNam St Mary's Hospital of the Catholic University of Korea. Microdissection assay was performed to obtain DNA samples from paraffin-embedded cervical tissues of cancer as well as of the adjacent normal tissues. The bacterial artificial chromosome (BAC) array used in this study consisted of 1440 human BACs and the space among the clones was 2.08 Mb. All the 15 cases of cervical cancer showed the differential changes of the cervical cancer-associated genetic alterations. The analysis limit of average gains and losses was 53%. A significant positive correlation was found in 8q24.3, 1p36.32, 3q27.1, 7p21.1, 11q13.1, and 3p14.2 changes through the cervical carcinogenesis. The regions of high level of gain were 1p36.33-1p36.32, 8q24.3, 16p13.3, 1p36.33, 3q27.1, and 7p21.1. And the regions of homozygous loss were 2q12.1, 22q11.21, 3p14.2, 6q24.3, 7p15.2, and 11q25. In the high level of gain regions, GSDMDC1, RECQL4, TP73, ABCF3, ALG3, HDAC9, ESRRA, and RPS6KA4 were significantly correlated with cervical cancer. The genes encoded by frequently lost clones were PTPRG, GRM7, ZDHHC3, EXOSC7, LRP1B, and NR3C2. Therefore, array-CGH analyses showed that specific genomic alterations were maintained in cervical cancer that were critical to the malignant phenotype and may give a chance to find out possible target genes present in the gained or lost clones.

  15. Association between chromosomal aberration of COX8C and tethered spinal cord syndrome: array-based comparative genomic hybridization analysis

    Directory of Open Access Journals (Sweden)

    Qiu-jiong Zhao

    2016-01-01

    Full Text Available Copy number variations have been found in patients with neural tube abnormalities. In this study, we performed genome-wide screening using high-resolution array-based comparative genomic hybridization in three children with tethered spinal cord syndrome and two healthy parents. Of eight copy number variations, four were non-polymorphic. These non-polymorphic copy number variations were associated with Angelman and Prader-Willi syndromes, and microcephaly. Gene function enrichment analysis revealed that COX8C, a gene associated with metabolic disorders of the nervous system, was located in the copy number variation region of Patient 1. Our results indicate that array-based comparative genomic hybridization can be used to diagnose tethered spinal cord syndrome. Our results may help determine the pathogenesis of tethered spinal cord syndrome and prevent occurrence of this disease.

  16. Collision avoidance for a mobile robot based on radial basis function hybrid force control technique

    Institute of Scientific and Technical Information of China (English)

    Wen Shu-Huan

    2009-01-01

    Collision avoidance is always difficult in the planning path for a mobile robot. In this paper, the virtual force field between a mobile robot and an obstacle is formed and regulated to maintain a desired distance by hybrid force control algorithm. Since uncertainties from robot dynamics and obstacle degrade the performance of a collision avoidance task, intelligent control is used to compensate for the uncertainties. A radial basis function (RBF) neural network is used to regulate the force field of an accurate distance between a robot and an obstacle in this paper and then simulation studies are conducted to confirm that the proposed algorithm is effective.

  17. GENERAL: Collision avoidance for a mobile robot based on radial basis function hybrid force control technique

    Science.gov (United States)

    Wen, Shu-Huan

    2009-10-01

    Collision avoidance is always difficult in the planning path for a mobile robot. In this paper, the virtual force field between a mobile robot and an obstacle is formed and regulated to maintain a desired distance by hybrid force control algorithm. Since uncertainties from robot dynamics and obstacle degrade the performance of a collision avoidance task, intelligent control is used to compensate for the uncertainties. A radial basis function (RBF) neural network is used to regulate the force field of an accurate distance between a robot and an obstacle in this paper and then simulation studies are conducted to confirm that the proposed algorithm is effective.

  18. Accuracy of the One-Stage and Two-Stage Impression Techniques: A Comparative Analysis

    Directory of Open Access Journals (Sweden)

    Ladan Jamshidy

    2016-01-01

    Full Text Available Introduction. One of the main steps of impression is the selection and preparation of an appropriate tray. Hence, the present study aimed to analyze and compare the accuracy of one- and two-stage impression techniques. Materials and Methods. A resin laboratory-made model, as the first molar, was prepared by standard method for full crowns with processed preparation finish line of 1 mm depth and convergence angle of 3-4°. Impression was made 20 times with one-stage technique and 20 times with two-stage technique using an appropriate tray. To measure the marginal gap, the distance between the restoration margin and preparation finish line of plaster dies was vertically determined in mid mesial, distal, buccal, and lingual (MDBL regions by a stereomicroscope using a standard method. Results. The results of independent test showed that the mean value of the marginal gap obtained by one-stage impression technique was higher than that of two-stage impression technique. Further, there was no significant difference between one- and two-stage impression techniques in mid buccal region, but a significant difference was reported between the two impression techniques in MDL regions and in general. Conclusion. The findings of the present study indicated higher accuracy for two-stage impression technique than for the one-stage impression technique.

  19. Comparative study of various techniques for environmental radon, thoron and progeny measurements.

    Science.gov (United States)

    Ramola, R C; Prasad, Mukesh; Rawat, Mukesh; Dangwal, Anoop; Gusain, G S; Mishra, Rosaline; Sahoo, S K; Tokonami, S

    2015-11-01

    Long-term average concentrations of radon, thoron and progeny were measured in normal and high background radiation areas in India using different techniques. Radon, thoron and progeny concentrations were measured using Raduet, Pin-Hole dosimeter, deposition-based CR-39 and deposition-based direct radon/thoron progeny sensor (DRPS/DTPS) detector system. All these techniques were used at a same time inside an individual dwelling. Radon concentration was recorded higher than thoron concentration in Garhwal Homes (NBRA) while thoron concentration was found relatively higher in the houses of Chhatarpur area (HBRA) in Odisha, India. The values measured with the CR-39 detector-based technique were found comparable with the values measured with the LR-115 detector-based technique. The comparisons of results using various techniques and their usefulness in radiation measurements are discussed in detail.

  20. Fuzzy Controller Design Using Evolutionary Techniques for Twin Rotor MIMO System: A Comparative Study

    Directory of Open Access Journals (Sweden)

    H. A. Hashim

    2015-01-01

    Full Text Available This paper presents a comparative study of fuzzy controller design for the twin rotor multi-input multioutput (MIMO system (TRMS considering most promising evolutionary techniques. These are gravitational search algorithm (GSA, particle swarm optimization (PSO, artificial bee colony (ABC, and differential evolution (DE. In this study, the gains of four fuzzy proportional derivative (PD controllers for TRMS have been optimized using the considered techniques. The optimization techniques are developed to identify the optimal control parameters for system stability enhancement, to cancel high nonlinearities in the model, to reduce the coupling effect, and to drive TRMS pitch and yaw angles into the desired tracking trajectory efficiently and accurately. The most effective technique in terms of system response due to different disturbances has been investigated. In this work, it is observed that GSA is the most effective technique in terms of solution quality and convergence speed.

  1. Comparing fairness perceptions of personnel selection techniques of American, French and South African job applicants.

    OpenAIRE

    2001-01-01

    The purpose of the study was to determine whether job applicants' perceptions of commonly used selection procedures vary across nationalities, because a negative impression of prospective employers that use selection techniques that are viewed as unfair, may result. In this study the fairness perceptions of 179 South African employees were compared with results obtained with 142 American and 117 French participants with regard to ten selection techniques using the framework of organisational ...

  2. An alternative hybrid evolutionary technique focused on allocating machines and sequencing operations

    Directory of Open Access Journals (Sweden)

    Mariano Frutos

    2016-09-01

    Full Text Available We present here a hybrid algorithm for the Flexible Job-Shop Scheduling Problem (FJSSP. This problem involves the optimal use of resources in a flexible production environment in which each operation can be carried out by more than a single machine. Our algorithm allocates, in a first step, the machines to operations and in a second stage it sequences them by integrating a Multi-Objective Evolutionary Algorithm (MOEA and a path-dependent search algorithm (Multi-Objective Simulated Annealing, which is enacted at the genetic phase of the procedure. The joint interaction of those two components yields a very efficient procedure for solving the FJSSP. An important step in the development of the algorithm was the selection of the right MOEA. Candidates were tested on problems of low, medium and high complexity. Further analyses showed the relevance of the search algorithm in the hybrid structure. Finally, comparisons with other algorithms in the literature indicate that the performance of our alternative is good.

  3. Improved performance of hybrid error control techniques for real-time digital communications over noisy channels

    Science.gov (United States)

    Yang, Charlie Qing

    1993-06-01

    Delay-related performance characteristics are investigated for asynchronous time division multiplexing links. Two methods based on an imbedded Markov chain model are developed and applied to the system with a noisy feedback channel yielding analytical expressions for the buffer occupancy and the block delay. A recursive expression for packet loss probability for systems with a finite transmitter buffer is obtained. The concept of delay limited error control coding is introduced for real-time communications. Performance improvement by truncation of a type-2 hybrid automatic repeat-request (ARQ) protocol with one retransmission is examined showing that the truncated protocol has a bounded delay and bounded queue length under typical conditions. The error performance of the truncated protocol is further analyzed for various mobile fading channels. Matched rate hybrid error control coding for both adaptive and non-adaptive cases is also studied. A new adaptive error control protocol using Reed-Solomon codes is proposed using novel feedback transmissions to achieve faster estimation of channel states. Numerical optimization is carried out by introducing overall and modified throughput as efficiency criteria. Based on channel bit error rate measurement, optimum overall throughput is obtained with minimum implementation complexity.

  4. Hybrid technique coil embolisation for intrahepatic arterioportal fistula in a cat: case report

    Directory of Open Access Journals (Sweden)

    Akiko Uemura

    2016-04-01

    Full Text Available Case summary A 13-month-old, female, mixed breed, 4.0 kg cat was referred with a 6 month history of decreased appetite, loss of vigour and intermittent vomiting. Physical examination revealed no cyanosis or wasting, and no audible heart murmur was auscultated. Blood profile revealed mild anaemia and mildly elevated postprandial serum ammonia (109 µg/dl. Abdominal ultrasonography revealed dilation of an intrahepatic portal vein branch and an intrahepatic aneurysm, with splenomegaly and ascites. Hepatic arteriovenous fistula/hepatic artery–portal vein fistula with multiple acquired portosystemic shunts was strongly suspected. Medical control was achieved using antibiotics, liver-protecting agents, a low-protein diet and blood transfusions. However, because medical treatment proved ineffective, coil embolisation was performed on day 11, using a hybrid approach via the mesenteric vein. Subsequent follow-up showed good appetite, with no signs of diarrhoea or ascites. Abdominal ultrasonography revealed that the mosaic pattern around the site of coil placement in the portal vein branch had improved and pulsatility had disappeared. Relevance and novel information Intrahepatic arterioportal fistula involves a circulatory shunt between the hepatic artery and the hepatic or portal vein within the liver, and may be congenital or acquired. Both forms have been reported in humans, but most cases in cats have been congenital. Few reports have described treatment methods or prognosis in cats. We report here that coil embolisation using a hybrid approach is a procedure offering easy, effective treatment by blocking hepatofugal blood flow.

  5. Improving skill development: an exploratory study comparing a philosophical and an applied ethical analysis technique

    Science.gov (United States)

    Al-Saggaf, Yeslam; Burmeister, Oliver K.

    2012-09-01

    This exploratory study compares and contrasts two types of critical thinking techniques; one is a philosophical and the other an applied ethical analysis technique. The two techniques analyse an ethically challenging situation involving ICT that a recent media article raised to demonstrate their ability to develop the ethical analysis skills of ICT students and professionals. In particular the skill development focused on includes: being able to recognise ethical challenges and formulate coherent responses; distancing oneself from subjective judgements; developing ethical literacy; identifying stakeholders; and communicating ethical decisions made, to name a few.

  6. A Survey and Comparative Study on Video Watermarking Techniques with Reference to Mobile Devices

    Directory of Open Access Journals (Sweden)

    Ankitha.A.Nayak

    2014-12-01

    Full Text Available During the last few years’ mobile devices like smart phone and tablet witnessed a random growth in terms of hardware and software. The increased growth of apps, sharing data, videos, images through internet need security and intellectual property right. Developing a watermarking technique for data protection and authentication on shared data in mobile internet within the limited memory and significant battery consumption is one of the current challenging fields. In this paper we have performed a survey on available video watermarking techniques and a feasibility study on video watermarking techniques for mobile devices. Also the comparative study on features of watermarking with different video watermarking algorithm is performed.

  7. Comparing and assessing different measurement techniques for mercury in coal systhesis gas

    Energy Technology Data Exchange (ETDEWEB)

    Maxwell, D.P.; Richardson, C.F. [Radian Corporation, Austin, TX (United States)

    1995-11-01

    Three mercury measurement techniques were performed on synthesis gas streams before and after an amine-based sulfur removal system. The syngas was sampled using (1) gas impingers containing a nitric acid-hydrogen peroxide solution, (2) coconut-based charcoal sorbent, and (3) an on-line atomic absorption spectrophotometer equipped with a gold amalgamation trap and cold vapor cell. Various impinger solutions were applied upstream of the gold amalgamation trap to remove hydrogen sulfide and isolate oxidized and elemental species of mercury. The results from these three techniques are compared to provide an assessment of these measurement techniques in reducing gas atmospheres.

  8. Chitosan-pectin hybrid nanoparticles prepared by coating and blending techniques.

    Science.gov (United States)

    Rampino, A; Borgogna, M; Bellich, B; Blasi, P; Virgilio, F; Cesàro, A

    2016-03-10

    The preparation of chitosan nanoparticles in combination with pectins, as additional mucoadhesive biopolymers, was investigated. Pectins from apple and from citrus fruit were considered; polygalacturonic acid was taken as a reference. Tripolyphosphate was used as an anionic cross-linker. Two different techniques were compared, namely the coating and the blending. Coated nanoparticles (NPs) in the ratio pectin:NPs from 2:1 to 5:1 evidenced that the size of NPs increased as the amount of pectin (both from apple and citrus fruit) was increased. In particular, for NPs coated with pectin from citrus fruit the size ranges from 200 to 260nm; while for NPs coated with pectin from apple the size ranges from 330 to 450nm. A minimum value of Z-potential around -35mV was obtained for the ratio pectin:NPs 4:1, while further addition of pectin did not decrease the Z-potential. Also blended NPs showed a dependence of the size on the ratio of the components: for a given ratio pectin:tripolyphosphate the size increases as the fraction of chitosan increases; for a low ratio chitosan:pectin a high amount of tripolyphosphate was needed to obtain a compact structure. The effect of the additional presence of loaded proteins in chitosan-pectin nanoparticles was also investigated, since proteins contribute to alter the electrostatic interactions among charged species. FT-IR and DSC characterization are presented to confirm the interactions between biopolymers. Finally, the biocompatibility of the used materials was assessed by the chorioallantoic membrane assay, confirming the safety of the materials.

  9. Comparative Study on Flexural Strengthening of RC Beams using CFRP Laminate by Different Techniques

    Science.gov (United States)

    Jeevan, N.; Jagannatha Reddy, H. N.

    2017-08-01

    This paper presents a detailed study on flexural behaviour of RC beams strengthened using Carbon Fiber Reinforced Polymer (CFRP) laminate. A detailed study was made on strengthened beam using Externally Bonded Laminate (EBL) and Internally Bonded Laminate (IBL) techniques. In IBL technique the laminate is sandwiched between the layers of epoxy mounted on the cover portion by the groove. The beams were designed as under-reinforced section. Totally six beams were casted, out of this two beams were control beams. Strengthened beams were divided into two sets (IBL and EBL) of two beams each. The main aim of this work is to delay the debonding failure in order to enhance the ultimate load carrying capacity for strengthened beams. Four-point bending flexural tests were conducted on specimens up to failure. The experimental results illustrate that, the strengthened beams significantly increases the cracking, working and ultimate load when compared with control beams. IBL technique shows the significant increase in the debonding strain by delaying the beam from debonding failure which in turn enhances the ultimate load by almost 73% compared with control beam and 39% with EBL technique. All the deflection values from the experiments are within the limit of codal provisions. The IBL technique was emerged as the better strengthening technique, which increases almost 41% of working load (Pw) compared with strengthening codes.

  10. Chromogenic in situ hybridization compared with other approaches to evaluate HER2/neu status in breast carcinomas

    Directory of Open Access Journals (Sweden)

    F.E. Rosa

    2013-03-01

    Full Text Available Human epidermal growth factor receptor 2 (HER2 has been evaluated in breast cancer patients to identify those most likely to benefit from herceptin-targeted therapy. HER2 amplification, detected in 20-30% of invasive breast tumors, is associated with reduced survival and metastasis. The most frequently used technique for evaluating HER2 protein status as a routine procedure is immunohistochemistry (IHC. HER2 copy number alterations have also been evaluated by fluorescence in situ hybridization (FISH in moderate immunoexpression (IHC 2+ cases. An alternative procedure to evaluate gene amplification is chromogenic in situ hybridization (CISH, which has some advantages over FISH, including the correlation between HER2 status and morphological features. Other methodologies have also been used, such as silver-enhanced in situ hybridization (SISH and quantitative real-time RT-PCR, to determine the number of HER2 gene copies and expression, respectively. Here we will present a short and comprehensive review of the current advances concerning HER2 evaluation in human breast cancer.

  11. Chromogenic in situ hybridization compared with other approaches to evaluate HER2/neu status in breast carcinomas

    Directory of Open Access Journals (Sweden)

    F.E. Rosa

    Full Text Available Human epidermal growth factor receptor 2 (HER2 has been evaluated in breast cancer patients to identify those most likely to benefit from herceptin-targeted therapy. HER2 amplification, detected in 20-30% of invasive breast tumors, is associated with reduced survival and metastasis. The most frequently used technique for evaluating HER2 protein status as a routine procedure is immunohistochemistry (IHC. HER2 copy number alterations have also been evaluated by fluorescence in situ hybridization (FISH in moderate immunoexpression (IHC 2+ cases. An alternative procedure to evaluate gene amplification is chromogenic in situ hybridization (CISH, which has some advantages over FISH, including the correlation between HER2 status and morphological features. Other methodologies have also been used, such as silver-enhanced in situ hybridization (SISH and quantitative real-time RT-PCR, to determine the number of HER2 gene copies and expression, respectively. Here we will present a short and comprehensive review of the current advances concerning HER2 evaluation in human breast cancer.

  12. Chromogenic in situ hybridization compared with other approaches to evaluate HER2/neu status in breast carcinomas

    Energy Technology Data Exchange (ETDEWEB)

    Rosa, F.E.; Santos, R.M. [Departamento de Patologia, Hospital das Clínicas, Faculdade de Medicina, Universidade Estadual Paulista, Botucatu, SP (Brazil); Rogatto, S.R. [Departamento de Urologia, Faculdade de Medicina, Universidade Estadual Paulista, Botucatu, SP (Brazil); Hospital A.C. Camargo, CIPE, São Paulo, SP (Brazil); Domingues, M.A.C. [Departamento de Patologia, Faculdade de Medicina, Universidade Estadual Paulista, Botucatu, SP (Brazil)

    2013-03-19

    Human epidermal growth factor receptor 2 (HER2) has been evaluated in breast cancer patients to identify those most likely to benefit from herceptin-targeted therapy. HER2 amplification, detected in 20-30% of invasive breast tumors, is associated with reduced survival and metastasis. The most frequently used technique for evaluating HER2 protein status as a routine procedure is immunohistochemistry (IHC). HER2 copy number alterations have also been evaluated by fluorescence in situ hybridization (FISH) in moderate immunoexpression (IHC 2+) cases. An alternative procedure to evaluate gene amplification is chromogenic in situ hybridization (CISH), which has some advantages over FISH, including the correlation between HER2 status and morphological features. Other methodologies have also been used, such as silver-enhanced in situ hybridization (SISH) and quantitative real-time RT-PCR, to determine the number of HER2 gene copies and expression, respectively. Here we will present a short and comprehensive review of the current advances concerning HER2 evaluation in human breast cancer.

  13. Comparative Studies of Clustering Techniques for Real-Time Dynamic Model Reduction

    CERN Document Server

    Hogan, Emilie; Halappanavar, Mahantesh; Huang, Zhenyu; Lin, Guang; Lu, Shuai; Wang, Shaobu

    2015-01-01

    Dynamic model reduction in power systems is necessary for improving computational efficiency. Traditional model reduction using linearized models or offline analysis would not be adequate to capture power system dynamic behaviors, especially the new mix of intermittent generation and intelligent consumption makes the power system more dynamic and non-linear. Real-time dynamic model reduction emerges as an important need. This paper explores the use of clustering techniques to analyze real-time phasor measurements to determine generator groups and representative generators for dynamic model reduction. Two clustering techniques -- graph clustering and evolutionary clustering -- are studied in this paper. Various implementations of these techniques are compared and also compared with a previously developed Singular Value Decomposition (SVD)-based dynamic model reduction approach. Various methods exhibit different levels of accuracy when comparing the reduced model simulation against the original model. But some ...

  14. COMPARING THE EFFICIENCY OF UAFF AND UASB WITH HYBRID REACTOR IN TREATING WOOD FIBER WASTEWATER

    Directory of Open Access Journals (Sweden)

    B. Ayati, H. Ganjidoust

    2006-01-01

    Full Text Available There are several kinds of anaerobic systems that are widely used for municipal and industrial wastewater treatment. Upflow Anaerobic Fixed Film (UAFF, Upflow Anaerobic Sludge Blanket (UASB and hybrid reactor (combination of UASB and UAFF are the mostly used in treating industrial wastewater. As several operational problems have normally been experienced in both UASB and UAFF systems such as long start-up periods and instability, a hybrid reactor has been conceptualized which addressed these problems but retained the positive aspects of these reactors, such as, high cell concentration, good mixing and tolerance to high loading rates. The wastewater has been obtained from Iran Wood Fiber Company which is located in Hassan Rood city, Gilan Province. After period of starting up the reactors and adaptation, the amount of influent COD was being increased stepwise. After the removal rate was reached to its maximum, the next period for increased load was started as after six months, the reactors could accept about 15 Kg/m3.d with high COD removal rate of about 58.5, 58.9 and 65 percent after 3 days detention time. After 5 and 6 months, maximum growth of granule and biofilm was observed. Diameter of 6 mm and mass to surface and COD removal of 0.25 g/cm2 were the highest measured parameters. The comparison of three studied systems showed that their efficiencies were close to each other. As the effective part of UAFF in hybrid reactor was only one third of the reactor, it acted as a separator of solidliquid-gas phases and UASB had the most effect on treatment. In each UAFF and UASB, all percent removal was resulted by each reactor. It can be concluded that hybrid reactor do have the advantages of both systems with at least half of the height of two reactors. Similar results could be obtained with each UAFF or UASB if higher height can be used.

  15. Comparative BAC-based mapping in the white-throated sparrow, a novel behavioral genomics model, using interspecies overgo hybridization

    Directory of Open Access Journals (Sweden)

    Gonser Rusty A

    2011-06-01

    Full Text Available Abstract Background The genomics era has produced an arsenal of resources from sequenced organisms allowing researchers to target species that do not have comparable mapping and sequence information. These new "non-model" organisms offer unique opportunities to examine environmental effects on genomic patterns and processes. Here we use comparative mapping as a first step in characterizing the genome organization of a novel animal model, the white-throated sparrow (Zonotrichia albicollis, which occurs as white or tan morphs that exhibit alternative behaviors and physiology. Morph is determined by the presence or absence of a complex chromosomal rearrangement. This species is an ideal model for behavioral genomics because the association between genotype and phenotype is absolute, making it possible to identify the genomic bases of phenotypic variation. Findings We initiated a genomic study in this species by characterizing the white-throated sparrow BAC library via filter hybridization with overgo probes designed for the chicken, turkey, and zebra finch. Cross-species hybridization resulted in 640 positive sparrow BACs assigned to 77 chicken loci across almost all macro-and microchromosomes, with a focus on the chromosomes associated with morph. Out of 216 overgos, 36% of the probes hybridized successfully, with an average number of 3.0 positive sparrow BACs per overgo. Conclusions These data will be utilized for determining chromosomal architecture and for fine-scale mapping of candidate genes associated with phenotypic differences. Our research confirms the utility of interspecies hybridization for developing comparative maps in other non-model organisms.

  16. [THE COMPARATIVE ANALYSIS OF TECHNIQUES OF IDENTIFICATION OF CORYNEBACTERIUM NON DIPHTHERIAE].

    Science.gov (United States)

    Kharseeva, G G; Voronina, N A; Mironov, A Yu; Alutina, E L

    2015-12-01

    The comparative analysis was carried out concerning effectiveness of three techniques of identification of Corynebacterium non diphtheriae: bacteriological, molecular genetic (sequenation on 16SpRNA) andmass-spectrometric (MALDI-ToFMS). The analysis covered 49 strains of Corynebacterium non diphtheriae (C.pseudodiphheriticum, C.amycolatum, C.propinquum, C.falsenii) and 2 strains of Corynebacterium diphtheriae isolated under various pathology form urogenital tract and upper respiratory ways. The corinbacteria were identified using bacteriologic technique, sequenation on 16SpRNA and mass-spectrometric technique (MALDIToF MS). The full concordance of results of species' identification was marked in 26 (51%) of strains of Corynebacterium non diphtheriae at using three analysis techniques; in 43 (84.3%) strains--at comparison of bacteriologic technique with sequenation on 16S pRNA and in 29 (57%)--at mass-spectrometric analysis and sequenation on 16S pRNA. The bacteriologic technique is effective for identification of Corynebacterium diphtheriae. The precise establishment of species belonging of corynebacteria with variable biochemical characteristics the molecular genetic technique of analysis is to be applied. The mass-spectrometric technique (MALDI-ToF MS) requires further renewal of data bases for identifying larger spectrum of representatives of genus Corynebacterium.

  17. Comparative analysis of pedicle screw versus hybrid instrumentation in adolescent idiopathic scoliosis surgery

    Directory of Open Access Journals (Sweden)

    Sohail Rafi

    2016-01-01

    Full Text Available Introduction: Adolescent idiopathic scoliosis is the most common type of scoliosis. A Cobb angle of 50° will progress beyond the age of spinal maturity. Surgery over bracing is advised at a Cobb angle above or equal to 50°. The aim of surgery is to bring the Cobb angle down below 50° to prevent reprogression as well as improve the quality of life. The objective of the study is to analyze the efficacy and significance in lifestyle improvement of pedicle screw-only fixation system versus the more common hybrid instrumentation system used for the surgical treatment of adolescent idiopathic scoliosis. Materials and Methods: A prospective cohort study was conducted involving two groups of patients were included in the study. One group was operated with pedicle screw-only method while the other with hybrid instrumentation system. The pre- and post-operative Cobb's angles were taken across a follow-up of 4 years. An SRS-30 questionnaire was given in a yearly follow-up to assess the lifestyle improvement of the patient. Results: Pedicle screw-only method was significantly more effective in reducing Cobb's angle (P = 0.0487. It was showed less loss of correction (P = 0.009 pedicle screw-only surgery was also better at reducing thoracic curves (P = 0.001. There seemed a better recovery time with pedicle screw surgery (P = 0.003. Conclusion: Pedicle screws are more effective and durable than hybrid systems at when treating adolescent idiopathic scoliosis.

  18. Comparative analysis of pedicle screw versus hybrid instrumentation in adolescent idiopathic scoliosis surgery

    Science.gov (United States)

    Rafi, Sohail; Munshi, Naseem; Abbas, Asad; Shaikh, Rabia Hassan; Hashmi, Imtiaz

    2016-01-01

    Introduction: Adolescent idiopathic scoliosis is the most common type of scoliosis. A Cobb angle of 50° will progress beyond the age of spinal maturity. Surgery over bracing is advised at a Cobb angle above or equal to 50°. The aim of surgery is to bring the Cobb angle down below 50° to prevent reprogression as well as improve the quality of life. The objective of the study is to analyze the efficacy and significance in lifestyle improvement of pedicle screw-only fixation system versus the more common hybrid instrumentation system used for the surgical treatment of adolescent idiopathic scoliosis. Materials and Methods: A prospective cohort study was conducted involving two groups of patients were included in the study. One group was operated with pedicle screw-only method while the other with hybrid instrumentation system. The pre- and post-operative Cobb's angles were taken across a follow-up of 4 years. An SRS-30 questionnaire was given in a yearly follow-up to assess the lifestyle improvement of the patient. Results: Pedicle screw-only method was significantly more effective in reducing Cobb's angle (P = 0.0487). It was showed less loss of correction (P = 0.009) pedicle screw-only surgery was also better at reducing thoracic curves (P = 0.001). There seemed a better recovery time with pedicle screw surgery (P = 0.003). Conclusion: Pedicle screws are more effective and durable than hybrid systems at when treating adolescent idiopathic scoliosis. PMID:27695235

  19. Photoactive Hybrid Catalysts Based on Natural and Synthetic Polymers: A Comparative Overview.

    Science.gov (United States)

    Colmenares, Juan Carlos; Kuna, Ewelina

    2017-05-12

    In the present review, we would like to draw the reader's attention to the polymer-based hybrid materials used in photocatalytic processes for efficient degradation of organic pollutants in water. These inorganic-organic materials exhibit unique physicochemical properties due to the synergistic effect originating from the combination of individual elements, i.e., photosensitive metal oxides and polymeric supports. The possibility of merging the structural elements of hybrid materials allows for improving photocatalytic performance through (1) an increase in the light-harvesting ability; (2) a reduction in charge carrier recombination; and (3) prolongation of the photoelectron lifetime. Additionally, the great majority of polymer materials exhibit a high level of resistance against ultraviolet irradiation and improved corrosion resistance. Taking into account that the chemical and environmental stability of the hybrid catalyst depends, to a great extent, on the functional support, we highlight benefits and drawbacks of natural and synthetic polymer-based photocatalytic materials and pay special attention to the fact that the accessibility of synthetic polymeric materials derived from petroleum may be impeded due to decreasing amounts of crude oil. Thus, it is necessary to look for cheap and easily available raw materials like natural polymers that come from, for instance, lignocellulosic wastes or crustacean residues to meet the demand of the "plastic" market.

  20. A comparative study of the classic and piggyback techniques for orthotopic liver transplantation

    Directory of Open Access Journals (Sweden)

    Saman Nikeghbalian

    2014-02-01

    Full Text Available Background: The classic technique of hepatectomy with venovenous bypass may cause a longer anhepatic phase and increase the rate of some complications, such as post-operative renal failure and thromboembolic events. But, in some cases, such as tumors and anatomic difficulties, the surgeon is obligated to use the classic technique even though there is some controversy about the safety of this technique without venovenous bypass in liver transplantation. The aim of this study was to compare the results of using the classic technique without venovenous bypass and the piggyback technique for liver transplantation. Methods: A retrospective case-series study was conducted on 227 consecutive successful liver transplants, including 55 cases in which the classic technique was used and 172 cases in which the piggyback technique was used. The transplants were performed from March 2010 through June 2011 in the Visceral Transplantation Ward at Namazi Hospital in Shiraz, Iran. The piggyback method was the preferred approach for hepatectomy, but the classic technique without venovenous bypass was performed in cirrhotic cases with anatomic difficulties, when there was a tumor, or when the surgeon preferred it. Results: There were no significant differences in post-operative rise in creatinine, decreases in intraoperative blood pressure, transfused packed red blood cells (RBC, or survival rates between the groups. Warm ischemic time (duration that donor liver is out of ice until it’s blood reperfusion in the recipient was approximately seven minutes longer in the classic group (P = 0, but it was less than 52 minutes, which is an acceptable time for this phase. Hospital stays were shorter in the classic group than in the piggyback group (P = 0.024. Conclusion: Although the piggyback technique is the preferred technique for hepatectomy in liver transplantation, the classic technique without venovenous bypass can be used safely in cirrhotic livers when necessary

  1. A pilot study comparing two physiotherapy techniques in patietnts with cystic fibrosis

    Directory of Open Access Journals (Sweden)

    S. M. Milne

    2004-02-01

    Full Text Available The flutter is a simple hand held device designed to facilitate the mobilisation of excess bronchial secretions by means of oscillating positive pressure. Traditionally patients at the Johannesburg Hospital Cystic Fibrosis clinic used the active cycle of breathing technique as a means of facilitating secretion mobilisation and clearance. When the flutter became available in South Africa in 1999 many cystic fibrosis patients wanted to change to this technique. Minimal research has been conducted comparing these two techniques. The aim of this pilot study was therefore to determine which technique is more effective in the mobilisation of  secretions in cystic fibrosis patients. The pilot study was conducted on seven cystic fibrosis patients (mean age 28 years, range 16-42 years admitted to the Johannesburg Hospital for antibiotic therapy. The study lasted four days and consisted of two treatment days  separated by a washout day on which no physiotherapy was performed. Patients randomised into Group A performed the flutter technique on day two and the active cycle of breathing technique on day four. Group B performed the active cycle of breathing technique on day two and the flutter on day four. The techniques were performed twice a day for  15 minutes. The measurements taken were daily 24-hour sputum samples and daily lung function tests. A questionnaire to determine patient preference to a technique concluded the study.  The results showed no statistical difference between the two techniques with regard to sputum weight or lung function (p<0.05. The questionnaire indicated that on a whole, patients had no preference for a technique.

  2. Comparing growth and fine root distribution in monocultures and mixed plantations of hybrid poplar and spruce

    Institute of Scientific and Technical Information of China (English)

    Lahcen Benomar; Annie DesRochers; Guy R.Larocque

    2013-01-01

    Disease prevention,biodiversity,productivity improvement and ecological considerations are all factors that contribute to increasing interest in mixed plantations.The objective of this study was to evaluate early growth and productivity of two hybrid poplar clones,P.balsamifera x trichocarpa (PBT) and P.maximowiczii x balsamifera (PMB),one improved family of Norway spruce (Picea glauca (PA)) and one improved family of white spruce (Picea abies (PG)) growing under different spacings in monocultures and mixed plots.The plantations were established in 2003 in Abitibi-Témiscamingue,Quebec,Canada,in a split plot design with spacing as the whole plot factor (1 × 1 m,3 × 3 m and 5 × 5 m) and mixture treatments as subplot factor (pure:PBT,PMB,PA and PG,and 1:1 mixture PBT:PA,PBT:PG,PMB:PA and PMB:PG).Results showed a beneficial effect of the hybrid poplar-spruce mixture on diameter growth for hybrid poplar clones,but not for the 5 × 5 m spacing because of the relatively young age of the plantations.Diameter growth of the spruces decreased in mixed plantings in the 1 × 1 m,while their height growth increased,resulting in similar aboveground biomass per tree across treatments.Because of the large size differences between spruces and poplars,aboveground biomass in the mixed plantings was generally less than that in pure poplar plots.Leaf nitrogen concentration for the two spruce families and hybrid poplar clone PMB was greater in mixed plots than in monocultures,while leaf nitrogen concentration of clone PBT was similar among mixture treatments.Because of its faster growth rate and greater soil resources demands,clone PMB was the only one showing an increase in leaf N with increased spacing between trees.Fine roots density was greater for both hybrid poplars than spruces.The vertical distribution of fine roots was insensitive to mixture treatment.

  3. A three-step workflow procedure for the interpretation of array-based comparative genome hybridization results in patients with idiopathic mental retardation and congenital anomalies.

    Science.gov (United States)

    Poot, Martin; Hochstenbach, Ron

    2010-08-01

    One of the aims of clinical genetics is to identify gene mutations or genomic rearrangements that may underlie complex presentations of phenotypic features, such as multiple congenital malformations and mental retardation. During the decade after publication of the first article on array-based comparative genome hybridization, this technique has supplemented karyotyping as the prime genome-wide screening method in patients with idiopathic multiple congenital malformations and mental retardation. The use of this novel, discovery-based, approach has dramatically increased the detection rate of genomic imbalances. Array-based comparative genome hybridization detects copy number changes in the genome of patients and healthy subjects, some of which may represent phenotypically neutral copy number variations. This prompts the need for properly distinguishing between those copy number changes that may contribute to the clinical phenotype amid a pool of neutral copy number variations. We briefly review the characteristics of copy number changes in relation to their clinical relevance. Second, we discuss several published workflow schemes to identify copy number changes putatively contributing to the phenotype, and third, we propose a three-step procedure aiming to rapidly evaluate copy number changes on a case-by-case basis as to their potential contribution to the phenotype of patients with idiopathic multiple congenital malformations and mental retardation. This workflow is gene-centered and should aid in identification of disease-related candidate genes and in estimating the recurrence risk for the disorder in the family.

  4. The Bactrocera dorsalis species complex: comparative cytogenetic analysis in support of Sterile Insect Technique applications.

    Science.gov (United States)

    Augustinos, Antonios A; Drosopoulou, Elena; Gariou-Papalexiou, Aggeliki; Bourtzis, Kostas; Mavragani-Tsipidou, Penelope; Zacharopoulou, Antigone

    2014-01-01

    The Bactrocera dorsalis species complex currently harbors approximately 90 different members. The species complex has undergone many revisions in the past decades, and there is still an ongoing debate about the species limits. The availability of a variety of tools and approaches, such as molecular-genomic and cytogenetic analyses, are expected to shed light on the rather complicated issues of species complexes and incipient speciation. The clarification of genetic relationships among the different members of this complex is a prerequisite for the rational application of sterile insect technique (SIT) approaches for population control. Colonies established in the Insect Pest Control Laboratory (IPCL) (Seibersdorf, Vienna), representing five of the main economic important members of the Bactrocera dorsalis complex were cytologically characterized. The taxa under study were B. dorsalis s.s., B. philippinensis, B. papayae, B. invadens and B. carambolae. Mitotic and polytene chromosome analyses did not reveal any chromosomal characteristics that could be used to distinguish between the investigated members of the B. dorsalis complex. Therefore, their polytene chromosomes can be regarded as homosequential with the reference maps of B. dorsalis s.s.. In situ hybridization of six genes further supported the proposed homosequentiallity of the chromosomes of these specific members of the complex. The present analysis supports that the polytene chromosomes of the five taxa under study are homosequential. Therefore, the use of the available polytene chromosome maps for B. dorsalis s.s. as reference maps for all these five biological entities is proposed. Present data provide important insight in the genetic relationships among the different members of the B. dorsalis complex, and, along with other studies in the field, can facilitate SIT applications targeting this complex. Moreover, the availability of 'universal' reference polytene chromosome maps for members of the complex

  5. Hybrid Neural-Network: Genetic Algorithm Technique for Aircraft Engine Performance Diagnostics Developed and Demonstrated

    Science.gov (United States)

    Kobayashi, Takahisa; Simon, Donald L.

    2002-01-01

    As part of the NASA Aviation Safety Program, a unique model-based diagnostics method that employs neural networks and genetic algorithms for aircraft engine performance diagnostics has been developed and demonstrated at the NASA Glenn Research Center against a nonlinear gas turbine engine model. Neural networks are applied to estimate the internal health condition of the engine, and genetic algorithms are used for sensor fault detection, isolation, and quantification. This hybrid architecture combines the excellent nonlinear estimation capabilities of neural networks with the capability to rank the likelihood of various faults given a specific sensor suite signature. The method requires a significantly smaller data training set than a neural network approach alone does, and it performs the combined engine health monitoring objectives of performance diagnostics and sensor fault detection and isolation in the presence of nominal and degraded engine health conditions.

  6. FPGA techniques based new hybrid modulation strategies for voltage source inverters.

    Science.gov (United States)

    Sudha, L U; Baskaran, J; Elankurisil, S A

    2015-01-01

    This paper corroborates three different hybrid modulation strategies suitable for single-phase voltage source inverter. The proposed method is formulated using fundamental switching and carrier based pulse width modulation methods. The main tale of this proposed method is to optimize a specific performance criterion, such as minimization of the total harmonic distortion (THD), lower order harmonics, switching losses, and heat losses. The proposed method is articulated using fundamental switching and carrier based pulse width modulation methods. Thus, the harmonic pollution in the power system will be reduced and the power quality will be augmented with better harmonic profile for a target fundamental output voltage. The proposed modulation strategies are simulated in MATLAB r2010a and implemented in a Xilinx spartan 3E-500 FG 320 FPGA processor. The feasibility of these modulation strategies is authenticated through simulation and experimental results.

  7. Fusion techniques for hybrid ground-penetrating radar: electromagnetic induction landmine detection systems

    Science.gov (United States)

    Laffin, Matt; Mohamed, Magdi A.; Etebari, Ali; Hibbard, Mark

    2010-04-01

    Hybrid ground penetrating radar (GPR) and electromagnetic induction (EMI) sensors have advanced landmine detection far beyond the capabilities of a single sensing modality. Both probability of detection (PD) and false alarm rate (FAR) are impacted by the algorithms utilized by each sensing mode and the manner in which the information is fused. Algorithm development and fusion will be discussed, with an aim at achieving a threshold probability of detection (PD) of 0.98 with a low false alarm rate (FAR) of less than 1 false alarm per 2 square meters. Stochastic evaluation of prescreeners and classifiers is presented with subdivisions determined based on mine type, metal content, and depth. Training and testing of an optimal prescreener on lanes that contain mostly low metal anti-personnel mines is presented. Several fusion operators for pre-screeners and classifiers, including confidence map multiplication, will be investigated and discussed for integration into the algorithm architecture.

  8. Technique of performing construction works by machines with hybrid: manual and remote control

    Directory of Open Access Journals (Sweden)

    Sevryugina Nadezhda

    2017-01-01

    Full Text Available The article discusses issues dealing with efficiency of construction work mechanization. It offers a mathematical model for assessment of mutual influence between the members of the ‘construction site-machine-operator’ system triad, that can give a quantitative assessment of how the efficiency of a technological task varies with more comprehensive use of operational capacities of the machine, while lower effect that limiting parameters of production environment and technical condition of the machine have on the operator. The article contains a constructive remote control solution for upgrade of the base machine. It describes the conditions for using the machines with hybrid: manual and remote control at construction sites. There is also an imitation model of operator’s scanning pattern and data experimental research that prove the efficiency of remotely controlled technological operations. The article proves that lower psychological load on the operator and better comfort contribute to positive economic effect and higher quality of the construction process.

  9. A hybrid fringe analysis technique for the elimination of random noise in interferometric wrapped phase maps

    Science.gov (United States)

    Bhat, Gopalakrishna K.

    1994-10-01

    A fringe analysis technique, which makes use of the spatial filtering property of the Fourier transform method, for the elimination of random impulsive noise in the wrapped phase maps obtained using the phase stepping technique, is presented. Phase noise is converted into intensity noise by transforming the wrapped phase map into a continuous fringe pattern inside the digital image processor. Fourier transform method is employed to filter out the intensity noise and recover the clean wrapped phase map. Computer generated carrier fringes are used to preserve the sign information. This technique makes the two dimensional phase unwrapping process less involved, because it eliminates the local phase fluctuations, which act as pseudo 2π discontinuities. The technique is applied for the elimination of noise in a phase map obtained using electro-optic holography.

  10. Distributed-parameter problem solved on a hybrid computer by a modified function storage technique

    DEFF Research Database (Denmark)

    Poulsen, N.J.

    1969-01-01

    Describes a method which is based on a function storage technique improved by a number of modifications; it fulfils the two main demands: the solution is based directly on the physical equations, and is accurate within 1%......Describes a method which is based on a function storage technique improved by a number of modifications; it fulfils the two main demands: the solution is based directly on the physical equations, and is accurate within 1%...

  11. A Low Cost Vision Based Hybrid Fiducial Mark Tracking Technique for Mobile Industrial Robots

    OpenAIRE

    Mohammed Y Aalsalem; Wazir Zada Khan; Quratul Ain Arshad

    2012-01-01

    The field of robotic vision is developing rapidly. Robots can react intelligently and provide assistance to user activities through sentient computing. Since industrial applications pose complex requirements that cannot be handled by humans, an efficient low cost and robust technique is required for the tracking of mobile industrial robots. The existing sensor based techniques for mobile robot tracking are expensive and complex to deploy, configure and maintain. Also some of them demand dedic...

  12. A comparative study of open technique and Z-plasty in management of pilonidal sinus

    Directory of Open Access Journals (Sweden)

    Siddhartha Priyadarshi

    2014-01-01

    Full Text Available Introduction: Pilonidal sinus is one of the common problems encountered in general surgical practices and the management of this disease is variable, contentious and problematic. Principles of treatment require eradication of the sinus tract; complete healing and prevention of recurrence. Although several surgical techniques have been described over the years, the management remains controversial. Aims and Objectives: The aim of this study was to compare the two techniques of the open method and Z-plasty in the management of pilonidal sinus, in terms of incidence of post-operative pain, total hospital stay, total recovery time, complications and recurrence rate. Materials and Methods: This is a prospective comparative study which was conducted in the surgical department of a teaching hospital. A total of 50 cases were included in this study. Of these, 25 cases were operated by the open technique and 25 by excision and Z-plasty. Observation and Result: The mean age at presentation was 29.44 years. Male genders followed by age between 20 and 30 years were the most common predisposing factors. The mean body mass index, early and late post-operative complications were comparable between the two groups. Mean hospital stay and total recovery time was significantly more in open technique group compared with Z-plasty group. Visual analog score was also significantly more in open technique group when compared with Z-plasty group. Conclusion: Excision with Z-plasty was better technique in terms of lesser hospital stay, lesser recovery time, less post-operative pain.

  13. COMPARATIVE STUDY AMONG HYBRID GROUND SOURCE HEAT PUMP SYSTEM, COMPLETE GROUND SOURCE HEAT PUMP AND CONVENTIONAL HVAC SYSTEM

    Energy Technology Data Exchange (ETDEWEB)

    Jiang Zhu; Yong X. Tao

    2011-11-01

    In this paper, a hotel with hybrid geothermal heat pump system (HyGSHP) in the Pensacola is selected and simulated by the transient simulation software package TRNSYS [1]. To verify the simulation results, the validations are conducted by using the monthly average entering water temperature, monthly facility consumption data, and etc. And three types of HVAC systems are compared based on the same building model and HVAC system capacity. The results are presented to show the advantages and disadvantages of HyGSHP compared with the other two systems in terms of energy consumptions, life cycle cost analysis.

  14. Applying Subtractive Hybridization Technique to Enrich and Amplify Tumor-Specific Transcripts of Esophageal Squamous Cell Carcinoma.

    Science.gov (United States)

    Mahmoudian, Reihaneh Alsadat; Abbaszadegan, Mohammad Reza; Gholamin, Mehran

    2017-04-01

    Subtractive hybridization (SH) as an efficient and powerful approach can be applied to isolate differentially expressed transcripts as well as detect of involved mRNAs in various cellular processes, particularly diseases and malignancies. This procedure leads to the enrichment of specific low copy transcripts of tumor cells. Having developed a new approach for SH to isolate tumor specific transcripts, we facilitated discovery of uniquely expressed genes in esophageal squamous cell carcinoma (ESCC). Total RNA was extracted from the fresh tumoral and their adjacent normal tissues, and purified using the Switch Mechanism At the 5' end of Reverse Transcript (SMART) method. Following cDNA synthesis of normal mRNAs using magnetic beads, it was hybridized with tumor mRNAs. To enhance efficiency of subtraction, hybridization was repeated three rounds. Finally, amplification of subtracted tumor-specific transcripts was carried out using in vitro transcription. The subtracted tumoral mRNAs was analyzed quantitatively using real-time PCR for both tumor-specific and housekeeping genes. The subtracted mRNA was confirmed as tumor-specific mRNA pool using RT-PCR and quantitative real-time PCR assessment. The elevated level of tumor-specific transcripts such as MAGE-A4 and CD44 as well as declined copy number of housekeeping genes such as GAPDH, β actin and β2-microglobulin, were confirmed in subtracted tumoral mRNA. The presence of tumor genes was confirmed after the SH procedure. The designed SH method in combination with SMART technique can isolate and amplify high quality tumor-specific transcripts even from small amount of tumor tissues. Removal of common transcripts from the extracted tumoral mRNAs using SH, leads to the enrichment of tumor-specific transcripts. The isolated transcripts are of interest because of their probable roles in ESCC progression and development. In addition, these tumor-specific mRNAs can be applied for future vaccine cancer studies.

  15. Comparative Analysis of Various Image Fusion Techniques For Biomedical Images: A Review

    Directory of Open Access Journals (Sweden)

    Nayera Nahvi,

    2014-05-01

    Full Text Available Image Fusion is a process of combining the relevant information from a set of images, into a single image, wherein the resultant fused image will be more informative and complete than any of the input images. This paper discusses implementation of DWT technique on different images to make a fused image having more information content. As DWT is the latest technique for image fusion as compared to simple image fusion and pyramid based image fusion, so we are going to implement DWT as the image fusion technique in our paper. Other methods such as Principal Component Analysis (PCA based fusion, Intensity hue Saturation (IHS Transform based fusion and high pass filtering methods are also discussed. A new algorithm is proposed using Discrete Wavelet transform and different fusion techniques including pixel averaging, min-max and max-min methods for medical image fusion. KEYWORDS:

  16. Wind Turbine Rotor Simulation via CFD Based Actuator Disc Technique Compared to Detailed Measurement

    Directory of Open Access Journals (Sweden)

    Esmail Mahmoodi

    2015-10-01

    Full Text Available In this paper, a generalized Actuator Disc (AD is used to model the wind turbine rotor of the MEXICO experiment, a collaborative European wind turbine project. The AD model as a combination of CFD technique and User Defined Functions codes (UDF, so-called UDF/AD model is used to simulate loads and performance of the rotor in three different wind speed tests. Distributed force on the blade, thrust and power production of the rotor as important designing parameters of wind turbine rotors are focused to model. A developed Blade Element Momentum (BEM theory as a code based numerical technique as well as a full rotor simulation both from the literature are included into the results to compare and discuss. The output of all techniques is compared to detailed measurements for validation, which led us to final conclusions.

  17. Comparative Analysis on Rice Plant Type of Two Super Hybrids and Shanyou63

    Institute of Scientific and Technical Information of China (English)

    LU Chuan-gen; ZOU Jiang-shi

    2003-01-01

    The characteristics of plant type and physiological indices for photosynthesis were analyzedusing two super hybrid rices, Liangyoupeijiu and LiangyouE32 as materials, and an indica hybrid, Shan-you63 as a control. Based on the present analysis and various theories and breeding practices on rice planttype, a model of plant ideotype for super hybrid rice (indica) in the lower reaches of Yangtze River Valleywas proposed. This was: a length of 35 - 40 cm for top leaf with a width of 2 cm, and that of 50 - 55 cmand 55 - 60 crm, respectively, for the second and third leaves from top, meanwhile, having a leaf angle of5°, 10° and 15° respectively, and a curvature of 1 - 1.5 cm-1 for the leaf face at heading stage; the upper-most three leaves keeping their activities for as long as 70 d, which could lead a LAI of 3 at full ripeness;loose plant type with thin (SLW=2.5- 3 gcm-2 , dry weight) and curve-slant leaves during early growingstage, and compact plant type by thick (SLW = 4 - 5 gcm-2 ) and erect leaves during the middle and lategrowing stages; with a coefficient of light extinction of 0.3 - 0.4, which allowed for an optimal LAI high of8 - 10 during the middle growth period; plant height of 110 -120 cm, with 2 -4 cm basal internode and along uppermost internode occupying 45 % of total stem length; 25 - 28 cm panicle with 8 - 10 spikelets percentimeter showing bend-type in ripening; a rich chlorophyll which led to a high net photosynthetic rate,and tolerance to light shading and photooxidation which is of benefit to increasing the adaptability to varyinglight conditions.

  18. Electromagnetic self-consistent field initialization and fluid advance techniques for hybrid-kinetic PWFA code Architect

    Science.gov (United States)

    Massimo, F.; Marocchino, A.; Rossi, A. R.

    2016-09-01

    The realization of Plasma Wakefield Acceleration experiments with high quality of the accelerated bunches requires an increasing number of numerical simulations to perform first-order assessments for the experimental design and online-analysis of the experimental results. Particle in Cell codes are the state-of-the-art tools to study the beam-plasma interaction mechanism, but due to their requirements in terms of number of cores and computational time makes them unsuitable for quick parametric scans. Considerable interest has been shown thus in methods which reduce the computational time needed for the simulation of plasma acceleration. Such methods include the use of hybrid kinetic-fluid models, which treat the relativistic bunches as in a PIC code and the background plasma electrons as a fluid. A technique to properly initialize the bunch electromagnetic fields in the time explicit hybrid kinetic-fluid code Architect is presented, as well the implementation of the Flux Corrected Transport scheme for the fluid equations integrated in the code.

  19. Adequate image quality with reduced radiation dose in prospectively triggered coronary CTA compared with retrospective techniques

    Energy Technology Data Exchange (ETDEWEB)

    Arnoldi, Elisabeth; Johnson, Thorsten R.; Rist, Carsten; Wintersperger, Bernd J.; Sommer, Wieland H.; Becker, Christoph R.; Reiser, Maximilian F.; Nikolaou, Konstantin [Ludwig-Maximilians University, Department of Clinical Radiology, University Hospitals Munich - Grosshadern Campus, Munich (Germany); Becker, Alexander [Ludwig-Maximilians University, Department of Medicine I, University Hospitals Munich - Grosshadern Campus, Munich (Germany)

    2009-09-15

    The goal of our study was to compare a prospective triggering (PT) CT technique with retrospectively gated (RG) CT techniques in coronary computed tomographic angiograms (CCTA) with respect to image quality and radiation dose. Sixty consecutive patients were enrolled. CCTAs using the RG technique were obtained with a dual-source 64-slice CT system in 40 patients, using ECG-triggered tube current modulation, with either a broad pulsing window at 30-80% of the RR interval (group RGb, 20 patients, heart rate > 70 bpm) or a small pulsing window at 70% (group RGs, 20 patients, heart rate < 70 bpm). The other 20 patients underwent CCTA using the PT technique on a 128-slice CT system (group PT, heart rate < 70 bpm). All images were evaluated by two observers for quality on a three-point scale, with 1 being excellent and 3 being insufficient. The effective radiation dose was calculated for each patient. The average image quality score was 1.5 {+-} 0.6 for PT, 1.35 {+-} 0.5 for RGs and 1.65 {+-} 0.5 for RGb. The mean effective dose for RGb was 9 {+-} 4 mSv, for RGs 7 {+-} 3 mSv and for PT 3 {+-} 1 mSv. This represents a 57% dose reduction for PT compared with RGs and a 67% dose reduction for PT compared with RGb. In conclusion, in selected patients CCTA with the PT technique offers adequate image quality with a significantly lower radiation dose compared with CCTA using RG techniques. (orig.)

  20. Using comparative genomic hybridization to survey genomic sequence divergence across species: a proof-of-concept from Drosophila

    Directory of Open Access Journals (Sweden)

    Kulathinal Rob J

    2010-04-01

    Full Text Available Abstract Background Genome-wide analysis of sequence divergence among species offers profound insights into the evolutionary processes that shape lineages. When full-genome sequencing is not feasible for a broad comparative study, we propose the use of array-based comparative genomic hybridization (aCGH in order to identify orthologous genes with high sequence divergence. Here we discuss experimental design, statistical power, success rate, sources of variation and potential confounding factors. We used a spotted PCR product microarray platform from Drosophila melanogaster to assess sequence divergence on a gene-by-gene basis in three fully sequenced heterologous species (D. sechellia, D. simulans, and D. yakuba. Because complete genome assemblies are available for these species this study presents a powerful test for the use of aCGH as a tool to measure sequence divergence. Results We found a consistent and linear relationship between hybridization ratio and sequence divergence of the sample to the platform species. At higher levels of sequence divergence (D. melanogaster ~84% of features had significantly less hybridization to the array in the heterologous species than the platform species, and thus could be identified as "diverged". At lower levels of divergence (≥ 97% identity, only 13% of genes were identified as diverged. While ~40% of the variation in hybridization ratio can be accounted for by variation in sequence identity of the heterologous sample relative to D. melanogaster, other individual characteristics of the DNA sequences, such as GC content, also contribute to variation in hybridization ratio, as does technical variation. Conclusions Here we demonstrate that aCGH can accurately be used as a proxy to estimate genome-wide divergence, thus providing an efficient way to evaluate how evolutionary processes and genomic architecture can shape species diversity in non-model systems. Given the increased number of species for which

  1. All-optical delay technique for supporting multiple antennas in a hybrid optical - wireless transmission system

    DEFF Research Database (Denmark)

    Prince, Kamau; Chiuchiarelli, A; Presi, M

    2008-01-01

    We introduce a novel continuously-variable optical delay technique to support beam-forming wireless communications systems using antenna arrays. We demonstrate delay with 64-QAM modulated signals at a rate of 15 Msymbol/sec with 2.5 GHz carrier frequency.......We introduce a novel continuously-variable optical delay technique to support beam-forming wireless communications systems using antenna arrays. We demonstrate delay with 64-QAM modulated signals at a rate of 15 Msymbol/sec with 2.5 GHz carrier frequency....

  2. Comparing the apical microleakage of lateral condensation and chloroform dip techniques with a new obturation method

    Directory of Open Access Journals (Sweden)

    Masoud Saatchi

    2011-01-01

    Full Text Available Background: The final objective of root canal therapy is to create a hermetic seal along the length of the root canal system. For this purpose, many methods and materials have been introduced. The purpose of this study was to compare the apical microleakage in a new obturation technique (true-tug-back with two other obturation techniques (lateral condensation and chloroform dip technique. Methods: In this in vitro study 102 single canal teeth were selected. The crowns were removed, and the canals were prepared using step-back technique. The master apical file was K-file #40. The teeth were divided into 3 experimental groups of 32 teeth. First group were obturated with lateral condensation technique and second group with chloroform dip technique and the third group with true-tug-back technique. Six teeth were used as control group. The teeth were placed in incubator at 100% humidity and 37°c for three days. The roots of the teeth were coated with two layers of nail varnish except for the apical 2 millimeter. Teeth were placed in Methylene blue 2% for one week. The teeth were sectioned vertically and the depth of maximum dye penetration for each tooth was recorded by stereomicroscope. Data were analyzed using ANOVA and Dunkan test. Results: The mean liner dye penetration differences between lateral condensation group (6.88 ± 4.06 mm and chloroform dip technique group (7.16 ± 3.37 mm were not statistically significant (P = 0.719. The differences between true-tug-back group (3.15 ± 0.52 mm and two other groups were statistically significant (P < 0.001. Conclusion: The results of this study showed that the true-tug-back technique can improve apical seal. Further studies are needed for this purpose.

  3. A Hybrid VLM Preceded SLM Technique Using Clipping and Filtering Method for PAPR Reduction in MIMO-OFDM Systems

    Directory of Open Access Journals (Sweden)

    Meenakshi

    2016-07-01

    Full Text Available MIMO-OFDM is an attractive interface for the next generation WLANs, WMAN, 4G and 5G mobile cellular systems. However the performance of the MIMO-OFDM systems is affected by Peak to Average Power Ratio (PAPR. PAPR is the main disadvantage associated with the MIMO-OFDM systems. So far, many techniques have been proposed to reduce the value of PAPR but high PAPR for MIMO-OFDM systems is still a demanding area and a different issue.In this paper, a hybrid VLM precoded SLM scheme using Clipping & Filtering has been proposed to reduce PAPR in MIMO-OFDM systems. And it has been observed that the proposed scheme has achieved a significant gain in PAPR reduction without increasing the system complexity and affecting the error performance of the system

  4. Hybrid vapor phase-solution phase growth techniques for improved CZT(S,Se) photovoltaic device performance

    Energy Technology Data Exchange (ETDEWEB)

    Chang, Liang-Yi; Gershon, Talia S.; Haight, Richard A.; Lee, Yun Seog

    2016-12-27

    A hybrid vapor phase-solution phase CZT(S,Se) growth technique is provided. In one aspect, a method of forming a kesterite absorber material on a substrate includes the steps of: depositing a layer of a first kesterite material on the substrate using a vapor phase deposition process, wherein the first kesterite material includes Cu, Zn, Sn, and at least one of S and Se; annealing the first kesterite material to crystallize the first kesterite material; and depositing a layer of a second kesterite material on a side of the first kesterite material opposite the substrate using a solution phase deposition process, wherein the second kesterite material includes Cu, Zn, Sn, and at least one of S and Se, wherein the first kesterite material and the second kesterite material form a multi-layer stack of the absorber material on the substrate. A photovoltaic device and method of formation thereof are also provided.

  5. Hybrid vapor phase-solution phase growth techniques for improved CZT(S,Se) photovoltaic device performance

    Science.gov (United States)

    Chang, Liang-Yi; Gershon, Talia S.; Haight, Richard A.; Lee, Yun Seog

    2016-12-27

    A hybrid vapor phase-solution phase CZT(S,Se) growth technique is provided. In one aspect, a method of forming a kesterite absorber material on a substrate includes the steps of: depositing a layer of a first kesterite material on the substrate using a vapor phase deposition process, wherein the first kesterite material includes Cu, Zn, Sn, and at least one of S and Se; annealing the first kesterite material to crystallize the first kesterite material; and depositing a layer of a second kesterite material on a side of the first kesterite material opposite the substrate using a solution phase deposition process, wherein the second kesterite material includes Cu, Zn, Sn, and at least one of S and Se, wherein the first kesterite material and the second kesterite material form a multi-layer stack of the absorber material on the substrate. A photovoltaic device and method of formation thereof are also provided.

  6. Comparison and performance analysis of closed loop controlled nonlinear system connected PWM inverter based on hybrid technique

    Directory of Open Access Journals (Sweden)

    V.M. Deshmukh

    2015-05-01

    Full Text Available This paper proposed closed loop control of nonlinear system connected inverter based on the optimal neural controller (ONC. The novelty of the proposed method rests on the hybrid technique which is the combined performance of both, particle swarm optimization (PSO technique and Radial basis function neural network (RBFNN. It effectively optimizes the feasible solutions by updating the generations, by taking lesser time with greater reliability. In the proposed method, the PSO generates the dataset according to different loading conditions. The RBFNN is trained by using the target control signals along with the corresponding input load voltage error and change in error. Depending on the load variations, the RBFNN predicts the exact control signals of the inverter during the testing time. Since experimentation and comparison of such inverter models on hardware being relatively expensive, the proposed method is implemented in the MATLAB/Simulink platform and the performance has been validated through the comparison analysis with the conventional techniques. The comparison results have proved the superiority of the proposed method.

  7. 3D printing of high-resolution PLA-based structures by hybrid electrohydrodynamic and fused deposition modeling techniques

    Science.gov (United States)

    Zhang, Bin; Seong, Baekhoon; Nguyen, VuDat; Byun, Doyoung

    2016-02-01

    Recently, the three-dimensional (3D) printing technique has received much attention for shape forming and manufacturing. The fused deposition modeling (FDM) printer is one of the various 3D printers available and has become widely used due to its simplicity, low-cost, and easy operation. However, the FDM technique has a limitation whereby its patterning resolution is too low at around 200 μm. In this paper, we first present a hybrid mechanism of electrohydrodynamic jet printing with the FDM technique, which we name E-FDM. We then develop a novel high-resolution 3D printer based on the E-FDM process. To determine the optimal condition for structuring, we also investigated the effect of several printing parameters, such as temperature, applied voltage, working height, printing speed, flow-rate, and acceleration on the patterning results. This method was capable of fabricating both high resolution 2D and 3D structures with the use of polylactic acid (PLA). PLA has been used to fabricate scaffold structures for tissue engineering, which has different hierarchical structure sizes. The fabrication speed was up to 40 mm/s and the pattern resolution could be improved to 10 μm.

  8. Real-time hybrid simulation technique for performance evaluation of full-scale sloshing dampers in wind turbines

    Science.gov (United States)

    Zhang, Zili; Basu, Biswajit; Nielsen, Saren R. K.

    2016-09-01

    As a variation of the pseudodynamic testing technique, the real-time hybrid simulation (RTHS) technique is executed in real time, thus allowing investigation of structural systems with rate-dependent components. In this paper, the RTHS is employed for performance evaluation of full-scale liquid sloshing dampers in multi-megawatt wind turbines, where the tuned liquid damper (TLD) is manufactured and tested as the physical substructure while the wind turbine is treated as the numerical substructure and modelled in the computer using a 13-degree-of-freedom (13-DOF) aeroelastic model. Wind turbines with 2 MW and 3 MW capacities have been considered under various turbulent wind conditions. Extensive parametric studies have been performed on the TLD, e.g., various tuning ratios by changing the water level, TLD without and with damping screens (various mesh sizes of the screen considered), and TLD with flat and sloped bottoms. The present study provides useful guidelines for employing sloshing dampers in large wind turbines, and indicates huge potentials of applying RTHS technique in the area of wind energy.

  9. An isothermal primer extension method for whole genome amplification of fresh and degraded DNA: applications in comparative genomic hybridization, genotyping and mutation screening.

    Science.gov (United States)

    Lee, Cheryl I P; Leong, Siew Hong; Png, Adrian E H; Choo, Keng Wah; Syn, Christopher; Lim, Dennis T H; Law, Hai Yang; Kon, Oi Lian

    2006-01-01

    We describe a protocol that uses a bioinformatically optimized primer in an isothermal whole genome amplification (WGA) reaction. Overnight incubation at 37 degrees C efficiently generates several hundred- to several thousand-fold increases in input DNA. The amplified product retains reasonably faithful quantitative representation of unamplified whole genomic DNA (gDNA). We provide protocols for applying this isothermal primer extension WGA protocol in three different techniques of genomic analysis: comparative genomic hybridization (CGH), genotyping at simple tandem repeat (STR) loci and screening for single base mutations in a common monogenic disorder, beta-thalassemia. gDNA extracted from formalin-fixed paraffin-embedded (FFPE) tissues can also be amplified with this protocol.

  10. Screening for cardiac HERG potassium channel interacting proteins using the yeast two-hybrid technique.

    Science.gov (United States)

    Ma, Qingyan; Yu, Hong; Lin, Jijin; Sun, Yifan; Shen, Xinyuan; Ren, Li

    2014-02-01

    The human ERG protein (HERG or Kv 11.1) encoded by the human ether-a-go-go-related gene (herg) is the pore-forming subunit of the cardiac delayed rectifier potassium current (IKr) responsible for action potential (AP) repolarization. Mutations in HERG lead to long-QT syndrome, a major cause of arrhythmias. Protein-protein interactions are fundamental for ion channel trafficking, membrane localization, and functional modulation. To identify proteins involved in the regulation of the HERG channel, we conducted a yeast two-hybrid screen of a human heart cDNA library using the C-terminus or N-terminus of HERG as bait. Fifteen proteins were identified as HERG amino terminal (HERG-NT)-interacting proteins, including Caveolin-1 (a membrane scaffold protein with multiple interacting partners, including G-proteins, kinases and NOS), the zinc finger protein, FHL2 and PTPN12 (a non-receptor tyrosine phosphatase). Eight HERG carboxylic terminal (HERG-CT)-interacting proteins were also identified, including the NF-κB-interacting protein myotrophin, We have identified multiple potential interacting proteins that may regulate cardiac IKr through cytoskeletal interactions, G-protein modulation, phosphorylation and downstream second messenger and transcription cascades. These findings provide further insight into dynamic modulation of HERG under physiological conditions and arrhythmogenesis.

  11. Speeding-up the hybrid video watermarking techniques in the DWT domain

    Science.gov (United States)

    Chammem, A.; Mitrea, M.; Preteux, F.

    2010-01-01

    The watermarking state of the art exhibits the hybrid methods combining spread spectrum and side information principles. The present study is focussed on speeding up such an algorithm (jointly patented by SFR - Vodafone Group and Institut Telecom). The dead lock on the reference method is first identified: the embedding module accounts for 90% of the whole watermarking chain and that more than 99% of this time is spent on applying an attack procedure (required in order to grant a good robustness to this method). The main issue of the present study is to deploy Monte Carlo generators accurately representing the watermarking attacks. In this respect, two difficulties should be overcome. First, accurate statistical models for the watermarking attacks should be obtained. Secondly, efficient Monte Carlo simulators should be deployed for these models. The last part of the study was devoted to the experimental validations. The mark is inserted in the (9,7) DWT representation of video sequence. Several types of attacks have been considered (linear and non-linear filters, geometrical transformations, ...). The quantitative results proved that the data payload, transparency and robustness properties have been inherited from the reference method. However, the watermarking speed was increased by a factor of 80.

  12. Comparative Study of the Photocatalytic Activity of Semiconductor Nanostructures and Their Hybrid Metal Nanocomposites on the Photodegradation of Malathion

    Directory of Open Access Journals (Sweden)

    Dina Mamdouh Fouad

    2012-01-01

    Full Text Available This work is devoted to synthesize different semiconductor nanoparticles and their metal-hybrid nanocomposites such as TiO2, Au/TiO2, ZnO, and Au/ZnO. The morphology and crystal structure of the prepared nanomaterials are characterized by the TEM and XRD, respectively. These materials are used as catalysts for the photodegradation of Malathion which is one of the most commonly used pesticides in the developing countries. The degradation of 10 ppm Malathion under ultraviolet (UV and visible light in the presence of the different synthesized nanocomposites was analyzed with high-performance liquid chromatography (HPLC and UV-Visible Spectra. A comprehensive study is carried out for the catalytic efficiency of the prepared nanoparticles. Different factors influencing the catalytic photodegradation are investigated, as different light source, surface coverage, and nature of the organic contaminants. The results indicate that hybrid nanocomposite of the semiconductor-metal hybrid serves as a better catalytic system compared with semiconductor nanoparticles themselves.

  13. Comparative Study of Hybrid Models Based on a Series of Optimization Algorithms and Their Application in Energy System Forecasting

    Directory of Open Access Journals (Sweden)

    Xuejiao Ma

    2016-08-01

    Full Text Available Big data mining, analysis, and forecasting play vital roles in modern economic and industrial fields, especially in the energy system. Inaccurate forecasting may cause wastes of scarce energy or electricity shortages. However, forecasting in the energy system has proven to be a challenging task due to various unstable factors, such as high fluctuations, autocorrelation and stochastic volatility. To forecast time series data by using hybrid models is a feasible alternative of conventional single forecasting modelling approaches. This paper develops a group of hybrid models to solve the problems above by eliminating the noise in the original data sequence and optimizing the parameters in a back propagation neural network. One of contributions of this paper is to integrate the existing algorithms and models, which jointly show advances over the present state of the art. The results of comparative studies demonstrate that the hybrid models proposed not only satisfactorily approximate the actual value but also can be an effective tool in the planning and dispatching of smart grids.

  14. A novel reconstruction method for giant incisional hernia: Hybrid laparoscopic technique

    Directory of Open Access Journals (Sweden)

    G Ozturk

    2015-01-01

    Full Text Available Background and Objectives: Laparoscopic reconstruction of ventral hernia is a popular technique today. Patients with large defects have various difficulties of laparoscopic approach. In this study, we aimed to present a new reconstruction technique that combines laparoscopic and open approach in giant incisional hernias. Materials and Methods: Between January 2006 and August 2012, 28 patients who were operated consequently for incisional hernia with defect size over 10 cm included in this study and separated into two groups. Group 1 (n = 12 identifies patients operated with standard laparoscopic approach, whereas group 2 (n = 16 labels laparoscopic technique combined with open approach. Patients were evaluated in terms of age, gender, body mass index (BMI, mean operation time, length of hospital stay, surgical site infection (SSI and recurrence rate. Results: There are 12 patients in group 1 and 16 patients in group 2. Mean length of hospital stay and SSI rates are similar in both groups. Postoperative seroma formation was observed in six patients for group 1 and in only 1 patient for group 2. Group 1 had 1 patient who suffered from recurrence where group 2 had no recurrence. Discussion: Laparoscopic technique combined with open approach may safely be used as an alternative method for reconstruction of giant incisional hernias.

  15. Hybrid microelectronic technology

    Science.gov (United States)

    Moran, P.

    Various areas of hybrid microelectronic technology are discussed. The topics addressed include: basic thick film processing, thick film pastes and substrates, add-on components and attachment methods, thin film processing, and design of thick film hybrid circuits. Also considered are: packaging hybrid circuits, automating the production of hybrid circuits, application of hybrid techniques, customer's view of hybrid technology, and quality control and assurance in hybrid circuit production.

  16. Comparative genomic hybridization analysis of genetic aberrations associated with development of esophageal squamous cell carcinoma in Henan, China

    Institute of Scientific and Technical Information of China (English)

    Yan-Ru Qin; Li-Dong Wang; Zong-Min Fan; Dora Kwong; Xin-Yuan Guan

    2008-01-01

    AIM: To characterize cytogenetic alterations in esophageal squamous cell carcinoma (ESCC) and its metastasis.METHODS: A total of 37 cases of primary ESCC and 15 pairs of primary ESCC tumors and their matched metastatic lymph nodes cases were enrolled from Linzhou, the high incidence area for ESCC in Henan, northern China. The comparative genomic hybridization (CGH) was applied to determine the chromosomal aberrations on the DNA extracted from the frozen ESCC and metastatic lymph node samples from these patients.RESULTS: CGH showed chromosomal aberrations in all the cases. In 37 cases of primary ESCC, chromosomal profile of DNA copy number was characterized by frequently detected gains at 8q (29/37, 78%), 3q (24/37, 65%), 5p (19/37, 51%); and frequently detected losses at 3p (21/37, 57%), 8p and 9q (14/37, 38%). In 15 pairs of primary ESCC tumors and their matched metastatic lymph node cases, the majority of the chromosomal aberrations in both primary tumor and metastatic lymph node lesions were consistent with the primary ESCC cases, but new candidate regions of interest were also detected. The most significant finding is the gains of chromosome 6p with a minimum high-level amplification region at 6pl2-6ql2 in 7 metastatic lymph nodes but only in 2 corresponding primary tumors (P = 0.05) and 20p with a minimum high-level amplification region at 20pl2 in 11 metastatic lymph nodes but only in 5 corresponding primary tumors (P < 0.05). Another interesting finding is the loss of chromosome 10p and 10q in 8 and 7 metastatic lymph nodes but only in 2 corresponding primary tumors (P < 0.05).CONCLUSION: Using the CGH technique to detect chromosomal aberrations in both the primary tumor and its metastatic lymph nodes of ESCC, gains of 8q, 3q and 5p and loss of 3p, 8p, 9q and 13q were specifically implicated in ESCC in Linzhou population. Gains of 6p and 20p and loss of 10pq may contribute to the lymph node metastasis of ESCC. These findings suggest that the gains and losses

  17. Endodontic filling removal procedure: an ex vivo comparative study between two rotary techniques

    Directory of Open Access Journals (Sweden)

    Monica Sampaio do Vale

    2013-12-01

    Full Text Available In this study, we compared the ex vivo removal capacity of two endodontic rotary techniques and determined whether there was a significant quantitative difference in residual material when comparing root thirds. Forty extracted molars were used. The palatal roots were selected, and the canals were prepared using a step-back technique and filled using a lateral condensation technique with gutta-percha points and Endofill sealer. After two weeks of storage in a 0.9% saline solution at 37ºC in an oven, the specimens were divided into 2 groups of 20, with group 1 samples subjected to Gates-Glidden drills and group 2 samples subjected to the ProTaper retreatment System. Hedstroem files and eucalyptol solvent were used in both groups to complete the removal procedure. Then, the roots thirds were radiographed and the images were submitted to the NIH ImageJ program to measure the residual filling material in mm. Each root third was related to the total area of the root canals. The data were analyzed using Student's t test. There was a statistically significant difference between the two techniques as more filling material was removed by technique 2 (ProTaper than technique 1 (Gates-Glidden drills, p < 0.05. The apical third had a greater amount of residual filling material than the cervical and middle thirds, and the difference was statistically significant (p < 0.05. None of the selected techniques removed all filling material, and the material was most difficult to remove from the apical third. The ProTaper files removed more material than the Gates-Glidden drills

  18. Comparing modelling techniques when designing VPH gratings for BigBOSS

    Science.gov (United States)

    Poppett, Claire; Edelstein, Jerry; Lampton, Michael; Jelinsky, Patrick; Arns, James

    2012-09-01

    BigBOSS is a Stage IV Dark Energy instrument based on the Baryon Acoustic Oscillations (BAO) and Red Shift Distortions (RSD) techniques using spectroscopic data of 20 million ELG and LRG galaxies at 0.5VPH) gratings have been identified as a key technology which will enable the efficiency requirement to be met, however it is important to be able to accurately predict their performance. In this paper we quantitatively compare different modelling techniques in order to assess the parameter space over which they are more capable of accurately predicting measured performance. Finally we present baseline parameters for grating designs that are most suitable for the BigBOSS instrument.

  19. Accuracy of the One-Stage and Two-Stage Impression Techniques: A Comparative Analysis

    OpenAIRE

    Ladan Jamshidy; Hamid Reza Mozaffari; Payam Faraji; Roohollah Sharifi

    2016-01-01

    Introduction. One of the main steps of impression is the selection and preparation of an appropriate tray. Hence, the present study aimed to analyze and compare the accuracy of one- and two-stage impression techniques. Materials and Methods. A resin laboratory-made model, as the first molar, was prepared by standard method for full crowns with processed preparation finish line of 1 mm depth and convergence angle of 3-4°. Impression was made 20 times with one-stage technique and 20 times with ...

  20. Comparative exploration of learning styles and teaching techniques between Thai and Vietnamese EFL students and instructors

    Directory of Open Access Journals (Sweden)

    Supalak Nakhornsri

    2016-09-01

    Full Text Available Learning styles have been a particular focus of a number of researchers over the past decades. Findings from various studies researching into how students learn highlight significant relationships between learners’ styles of learning and their language learning processes and achievement. This research focuses on a comparative analysis of the preferences of English learning styles and teaching techniques perceived by students from Thailand and Vietnam, and the teaching styles and techniques practiced by their instructors. The purposes were 1 to investigate the learning styles and teaching techniques students from both countries preferred, 2 to investigate the compatibility of the teaching styles and techniques practiced by instructors and those preferred by the students, 3 to specify the learning styles and teaching techniques students with high level of English proficiency preferred, and 4 to investigate the similarities of Thai and Vietnamese students’ preferences for learning styles and teaching techniques. The sample consisted of two main groups: 1 undergraduate students from King Mongkut’s University of Technology North Bangkok (KMUTNB, Thailand and Thai Nguyen University (TNU, Vietnam and 2 English instructors from both institutions. The instruments employed comprised the Students’ Preferred English Learning Style and Teaching Technique Questionnaire and the Teachers’ Practiced English Teaching Style and Technique Questionnaire. The collected data were analyzed using arithmetic means and standard deviation. The findings can contribute to the curriculum development and assist teachers to teach outside their comfort level to match the students’ preferred learning styles. In addition, the findings could better promote the courses provided for students. By understanding the learning style make-up of the students enrolled in the courses, faculty can adjust their modes of content delivery to match student preferences and maximize

  1. Establishment of a new human pleomorphic malignant fibrous histiocytoma cell line, FU-MFH-2: molecular cytogenetic characterization by multicolor fluorescence in situ hybridization and comparative genomic hybridization

    Directory of Open Access Journals (Sweden)

    Isayama Teruto

    2010-11-01

    Full Text Available Abstract Background Pleomorphic malignant fibrous histiocytoma (MFH is one of the most frequent malignant soft tissue tumors in adults. Despite the considerable amount of research on MFH cell lines, their characterization at a molecular cytogenetic level has not been extensively analyzed. Methods and results We established a new permanent human cell line, FU-MFH-2, from a metastatic pleomorphic MFH of a 72-year-old Japanese man, and applied multicolor fluorescence in situ hybridization (M-FISH, Urovysion™ FISH, and comparative genomic hybridization (CGH for the characterization of chromosomal aberrations. FU-MFH-2 cells were spindle or polygonal in shape with oval nuclei, and were successfully maintained in vitro for over 80 passages. The histological features of heterotransplanted tumors in severe combined immunodeficiency mice were essentially the same as those of the original tumor. Cytogenetic and M-FISH analyses displayed a hypotriploid karyotype with numerous structural aberrations. Urovysion™ FISH revealed a homozygous deletion of the p16INK4A locus on chromosome band 9p21. CGH analysis showed a high-level amplification of 9q31-q34, gains of 1p12-p34.3, 2p21, 2q11.2-q21, 3p, 4p, 6q22-qter, 8p11.2, 8q11.2-q21.1, 9q21-qter, 11q13, 12q24, 15q21-qter, 16p13, 17, 20, and X, and losses of 1q43-qter, 4q32-qter, 5q14-q23, 7q32-qter, 8p21-pter, 8q23, 9p21-pter, 10p11.2-p13, and 10q11.2-q22. Conclusion The FU-MFH-2 cell line will be a particularly useful model for studying molecular pathogenesis of human pleomorphic MFH.

  2. Establishment of Relationships between Material Design and Product Design Domains by Hybrid FEM-ANN Technique

    CERN Document Server

    Prakash, K Soorya; Raj, M Joseph Malvin

    2010-01-01

    In this paper, research on AI based modeling technique to optimize development of new alloys with necessitated improvements in properties and chemical mixture over existing alloys as per functional requirements of product is done. The current research work novels AI in lieu of predictions to establish association between material and product customary. Advanced computational simulation techniques like CFD, FEA interrogations are made viable to authenticate product dynamics in context to experimental investigations. Accordingly, the current research is focused towards binding relationships between material design and product design domains. The input to feed forward back propagation prediction network model constitutes of material design features. Parameters relevant to product design strategies are furnished as target outputs. The outcomes of ANN shows good sign of correlation between material and product design domains. The study enriches a new path to illustrate material factors at the time of new product d...

  3. Evaluation and Optimization Study on a Hybrid EOR Technique Named as Chemical-Alternating-Foam Floods

    Directory of Open Access Journals (Sweden)

    Xu Xingguang

    2017-01-01

    Full Text Available This work presents a novel Enhanced Oil Recovery (EOR method called Chemical-Alternating-Foam (CAF floods in order to overcome the drawbacks of the conventional foam flooding such as insufficient amount of in-situ foams, severe foam collapse and surfactant retention. The first part of this research focused on the comparison of conventional foam floods and CAF floods both of which had the same amount of gas and chemicals. It showed that: (1 CAF floods possessed the much greater Residual Resistance Factor (RRF at elevated temperature; (2 the accumulative oil recovery of the CAF floods was 10%-15% higher than that of the conventional foam flooding. After 1.8 Pore Volume (PV injection, the oil recovery reached the plateau for both methods; (3 CAF floods yielded the most amount of incremental oil at the 98% water cut (water content in the effluent, while the continuous foam floods achieved the best performance at 60% water cut. The second part of this work determined the optimal foam quality (gas/liquid ratio or the volume percent gas within foam, chemical/foam slug size ratio, cycle number and injection sequence for the CAF floods. It was found that the CAF was endowed with the peak performance if the foam quality, chemical/foam slug size ratio, cycle number was fixed at 80%, 1:1 and 3 respectively with the chemical slug being introduced ahead of the foam slug. Through systematic and thorough research, the proposed hybrid process has been approved to be a viable and effective method significantly strengthening the conventional foam flooding.

  4. High process yield rates of thermoplastic nanofluidic devices using a hybrid thermal assembly technique.

    Science.gov (United States)

    Uba, Franklin I; Hu, Bo; Weerakoon-Ratnayake, Kumuditha; Oliver-Calixte, Nyote; Soper, Steven A

    2015-02-21

    Over the past decade, thermoplastics have been used as alternative substrates to glass and Si for microfluidic devices because of the diverse and robust fabrication protocols available for thermoplastics that can generate high production rates of the desired structures at low cost and with high replication fidelity, the extensive array of physiochemical properties they possess, and the simple surface activation strategies that can be employed to tune their surface chemistry appropriate for the intended application. While the advantages of polymer microfluidics are currently being realized, the evolution of thermoplastic-based nanofluidic devices is fraught with challenges. One challenge is assembly of the device, which consists of sealing a cover plate to the patterned fluidic substrate. Typically, channel collapse or substrate dissolution occurs during assembly making the device inoperable resulting in low process yield rates. In this work, we report a low temperature hybrid assembly approach for the generation of functional thermoplastic nanofluidic devices with high process yield rates (>90%) and with a short total assembly time (16 min). The approach involves thermally sealing a high T(g) (glass transition temperature) substrate containing the nanofluidic structures to a cover plate possessing a lower T(g). Nanofluidic devices with critical feature sizes ranging between 25-250 nm were fabricated in a thermoplastic substrate (T(g) = 104 °C) and sealed with a cover plate (T(g) = 75 °C) at a temperature significantly below the T(g) of the substrate. Results obtained from sealing tests revealed that the integrity of the nanochannels remained intact after assembly and devices were useful for fluorescence imaging at high signal-to-noise ratios. The functionality of the assembled devices was demonstrated by studying the stretching and translocation dynamics of dsDNA in the enclosed thermoplastic nanofluidic channels.

  5. Development of a wireless bridge monitoring system for condition assessment using hybrid techniques

    Science.gov (United States)

    Whelan, Matthew J.; Fuchs, Michael P.; Gangone, Michael V.; Janoyan, Kerop D.

    2007-04-01

    The introduction and development of wireless sensor network technology has resulted in rapid growth within the field of structural health monitoring (SHM), as the dramatic cable costs associated with instrumentation of large civil structures is potentially alleviated. Traditionally, condition assessment of bridge structures is accomplished through the use of either vibration measurements or strain sensing. One approach is through quantifying dynamic characteristics and mode shapes developed through the use of relatively dense arrays of accelerometers. Another widely utilized method of condition assessment is bridge load rating, which is enabled through the use of strain sensors. The Wireless Sensor Solution (WSS) developed specifically for diagnostic bridge monitoring provides a hybrid system that interfaces with both accelerometers and strain sensors to facilitate vibration-based bridge evaluation as well as load rating and static analysis on a universal platform. This paper presents the development and testing of a wireless bridge monitoring system designed within the Laboratory for Intelligent Infrastructure and Transportation Technologies (LIITT) at Clarkson University. The system interfaces with low-cost MEMS accelerometers using custom signal conditioning for amplification and filtering tailored to the spectrum of typical bridge vibrations, specifically from ambient excitation. Additionally, a signal conditioning and high resolution ADC interface is provided for strain gauge sensors. To permit compensation for the influence of temperature, thermistor-based temperature sensing is also enabled. In addition to the hardware description, this paper presents features of the software applications and host interface developed for flexible, user-friendly in-network control of and acquisition from the sensor nodes. The architecture of the software radio protocol is also discussed along with results of field deployments including relatively large-scale networks and

  6. Hybrid Machine Learning Technique for Forecasting Dhaka Stock Market Timing Decisions

    OpenAIRE

    Shipra Banik; Khodadad Khan, A. F. M.; Mohammad Anwer

    2014-01-01

    Forecasting stock market has been a difficult job for applied researchers owing to nature of facts which is very noisy and time varying. However, this hypothesis has been featured by several empirical experiential studies and a number of researchers have efficiently applied machine learning techniques to forecast stock market. This paper studied stock prediction for the use of investors. It is always true that investors typically obtain loss because of uncertain investment purposes and unsigh...

  7. Progress on Application of Yeast Two-hybrid Technique%酵母双杂交技术应用进展

    Institute of Scientific and Technical Information of China (English)

    王婷; 葛怀娜; 郭宏

    2015-01-01

    Yeast two-hybrid system is one of the most powerful and widely used method to detect protein-protein interaction in living cells.Yeast two-hybrid technique is cost-effective, easy to operate, can reach the whole-genome level, and identify the interaction between different varieties.Compared with the traditional detected method, it has obvious advantages and has been applied in more and more fields.In this paper, the yeast two-hybrid technology principle and application were reviewed, including the applications on discovering new protein and proteins’new function, setting up the protein linkage map, studing of human genome DNA library, screening target for drug, and so on.The paper was expected to provide reference for the application of yeast two-hybrid system.%酵母双杂交技术是鉴定蛋白互作最有效和最广泛的分子生物学技术。该技术能直接作用于活细胞,检测细胞内蛋白质互作,具有成本低、易操作、可达到全基因组水平、能进行品种间的互作鉴定等诸多优点。较之传统的检测方法有明显优势,已在越来越多的领域得到应用。对酵母双杂交的技术原理以及应用进行了综述,介绍了该技术在发现新蛋白质、探究蛋白质功能、建立基因组蛋白连锁图、研究人类DNA文库和筛选药物作用位点等方面的重要应用,以期为该技术的广泛应用提供参考。

  8. Cardiac hybrid imaging

    Energy Technology Data Exchange (ETDEWEB)

    Gaemperli, Oliver [University Hospital Zurich, Cardiac Imaging, Zurich (Switzerland); University Hospital Zurich, Nuclear Cardiology, Cardiovascular Center, Zurich (Switzerland); Kaufmann, Philipp A. [University Hospital Zurich, Cardiac Imaging, Zurich (Switzerland); Alkadhi, Hatem [University Hospital Zurich, Institute of Diagnostic and Interventional Radiology, Zurich (Switzerland)

    2014-05-15

    Hybrid cardiac single photon emission computed tomography (SPECT)/CT imaging allows combined assessment of anatomical and functional aspects of cardiac disease. In coronary artery disease (CAD), hybrid SPECT/CT imaging allows detection of coronary artery stenosis and myocardial perfusion abnormalities. The clinical value of hybrid imaging has been documented in several subsets of patients. In selected groups of patients, hybrid imaging improves the diagnostic accuracy to detect CAD compared to the single imaging techniques. Additionally, this approach facilitates functional interrogation of coronary stenoses and guidance with regard to revascularization procedures. Moreover, the anatomical information obtained from CT coronary angiography or coronary artery calcium scores (CACS) adds prognostic information over perfusion data from SPECT. The use of cardiac hybrid imaging has been favoured by the dissemination of dedicated hybrid systems and the release of dedicated image fusion software, which allow simple patient throughput for hybrid SPECT/CT studies. Further technological improvements such as more efficient detector technology to allow for low-radiation protocols, ultra-fast image acquisition and improved low-noise image reconstruction algorithms will be instrumental to further promote hybrid SPECT/CT in research and clinical practice. (orig.)

  9. Coronary bifurcation lesions treated with double kissing crush technique compared to classical crush technique: serial intravascular ultrasound analysis.

    Science.gov (United States)

    Shan, Shou-Jie; Ye, Fei; Liu, Zhi-Zhong; Tian, Nai-Liang; Zhang, Jun-Jie; Chen, Shao-Liang

    2013-04-01

    The double kissing (DK) crush technique is a modified version of the crush technique. It is specifically designed to increase the success rate of the final kissing balloon post-dilatation, but its efficacy and safety remain unclear. Data were obtained from the DKCRUSH-I trial, a prospective, randomized, multi-center study to evaluate safety and efficacy. Post-procedural and eight-month follow-up intravascular ultrasound (IVUS) analysis was available in 61 cases. Volumetric analysis using Simpson's method within the Taxus stent, and cross-sectional analysis at the five sites of the main vessel (MV) and three sites of the side branch (SB) were performed. Impact of the bifurcation angle on stent expansion at the carina was also evaluated. Stent expansion in the SB ostium was significantly less in the classical crush group ((53.81 ± 13.51)%) than in the DK crush group ((72.27 ± 11.46)%) (P = 0.04). For the MV, the incidence of incomplete crush was 41.9% in the DK group and 70.0% in the classical group (P = 0.03). The percentage of neointimal area at the ostium had a tendency to be smaller in the DK group compared with the classical group ((16.4 ± 19.2)% vs. (22.8 ± 27.1)%, P = 0.06). The optimal threshold of post-procedural minimum stent area (MSA) to predict follow-up minimum lumen area (MLA) kissing balloon inflation (FKBI) and had smaller optimal cutoff value of post-procedural MSA at the SB ostium.

  10. Coronary bifurcation lesions treated with double kissing crush technique compared to classical crush technique: serial intravascular ultrasound analysis

    Institute of Scientific and Technical Information of China (English)

    SHAN Shou-jie; YE Fei; LIU Zhi-zhong; TIAN Nai-liang; ZHANG Jun-jie; HEN Shao-liang

    2013-01-01

    Background The double kissing (DK) crush technique is a modified version of the crush technique.It is specifically designed to increase the success rate of the final kissing balloon post-dilatation,but its efficacy and safety remain unclear.Methods Data were obtained from the DKCRUSH-I trial,a prospective,randomized,multi-center study to evaluate safety and efficacy.Post-procedural and eight-month follow-up intravascular ultrasound (IVUS) analysis was available in 61 cases.Volumetric analysis using Simpson's method within the Taxus stent,and cross-sectional analysis at the five sites of the main vessel (MV) and three sites of the side branch (SB) were performed.Impact of the bifurcation angle on stent expansion at the carina was also evaluated.Results Stent expansion in the SB ostium was significantly less in the classical crush group ((53.81±13.51)%) than in the DK crush group ((72.27±11.46)%) (P=-0.04).For the MV,the incidence of incomplete crush was 41.9% in the DK group and 70.0% in the classical group (P=-0.03).The percentage of neointimal area at the ostium had a tendency to be smaller in the DK group compared with the classical group ((16.4±19.2)% vs.(22.8±27.1)%,P=-0.06).The optimal threshold of post-procedural minimum stent area (MSA) to predict follow-up minimum lumen area (MLA) <4.0 mm2 at the SB ostium was 4.55 mm2,yielding an area under the curve of 0.80 (95% confidence interval:0.61 to 0.92).Conclusion Our data suggest that the DK crush technique is associated with improved quality of the final kissing balloon inflation (FKBI) and had smaller optimal cutoff value of post-procedural MSA at the SB ostium.

  11. A Comparative Study of Pollutant Removal Stability in Hybrid Wetland Columns

    Institute of Scientific and Technical Information of China (English)

    Tanveer Ferdous Saeed; Guang zhi Sun

    2012-01-01

    This study investigated the effects of two alternative substrates (wood mulch and zeolite) on the performance of three laboratory-scale hybrid wetland systems that had identical system components and configurations.Each system consisted of a vertical flow (VF) wetland column,followed by a horizontal flow (HF) column and a vertical flow column.The substrates employed were wood mulch,gravel and zeolite,and Phragmites australis were planted in each column.The systems received synthetic wastewater,with pollutant loadings in the range of 8.5-38.0g/(m2· d) total nitrogen (TN) and 4.0-46.4 g/(m2· d) biological oxygen demand (BOD5).Wood mulch and zeolite substrates showed higher efficiencies in terms of removing nitrogenous compounds and biodegradable organics.The supply of organic carbon from the organic mulch substrates enhanced denitrification,while adsorption of influent ammoniacal nitrogen (NH4—N) in zeolite played a major role in the removal of nitrogenous species in the wetland columns.Overall,the average percentage removals of TN and BOD5 reached>66% and >96% respectively,indicating stable performances by the hybrid wetland systems under the experimental loading ranges.Mathematical models were developed,based on the combination of Monod kinetics and continuously-stirred tank reactor (CSTR) flow patterns to describe the degradation of nitrogenous compounds.Predictions by the models closely matched the experimental data,indicating the validity and potential application of Monod kinetics in the modelling and design of treatment wetlands.

  12. Identification of chromosome aberrations in sporadic microsatellite stable and unstable colorectal cancers using array comparative genomic hybridization

    DEFF Research Database (Denmark)

    Jensen, Thomas Dyrsø; Li, Jian; Wang, Kai;

    2011-01-01

    Colorectal cancer (CRC) is one of the most common cancers in Denmark and in the western world in general, and the prognosis is generally poor. According to the traditional molecular classification of sporadic colorectal cancer, microsatellite stable (MSS)/chromosome unstable (CIN) colorectal...... cancers constitute approximately 85% of sporadic cases, whereas microsatellite unstable (MSI) cases constitute the remaining 15%. In this study, we used array comparative genomic hybridization (aCGH) to identify genomic hotspot regions that harbor recurrent copy number changes. The study material...

  13. Prenatal Diagnosis of a Fetus with de novo Supernumerary Ring Chromosome 16 Characterized by Array Comparative Genomic Hybridization

    Directory of Open Access Journals (Sweden)

    Pietro Cignini

    2011-09-01

    Full Text Available A fetus with de novo ring chromosome 16 is presented. At 20 weeks' gestation, ultrasound examination demonstrated bilateral clubfoot, bilateral renal pyelectasis, hypoplasia of the corpus callosum, and transposition of the great vessel. Amniocentesis was performed. Chromosome analysis identified a ring chromosome 16 [47,XY,r(16] and array comparative genomic hybridization (a-CGH demonstrated that the ring included the euchromatic portion 16p11.2. Postmortem examination confirmed prenatal findings. This is the first case of de novo ring chromosome 16 diagnosed prenatally with a new phenotypic pattern and also reinforces the importance of offering amniocentesis with a-CGH if fetal anomalies are detected.

  14. Design of near-perfect-reconstructed transmultiplexer using different modulation techniques: A comparative study

    Directory of Open Access Journals (Sweden)

    A. Vishwakarma

    2017-07-01

    Full Text Available In this paper, an efficient iterative method for design of near-perfect reconstructed transmultiplexer (NPR TMUX is proposed for the prescribed roll-off factor (RF and stop band attenuation (As. In this method, windowing technique has been used for the design of prototype filter, and different modulation techniques have been exploited for designing multi-channel transmultiplexer (TMUX. In this method, inter-channel interference (ICI is iteratively minimized so that it approximately reduces to ideal value zero. Design example is given to illustrate the superiority of the proposed method over earlier reported work. A comparative study of the performance of different modulation techniques for designing TMUX is also presented.

  15. Comparative evaluation of scatter correction techniques in 3D positron emission tomography

    CERN Document Server

    Zaidi, H

    2000-01-01

    Much research and development has been concentrated on the scatter compensation required for quantitative 3D PET. Increasingly sophisticated scatter correction procedures are under investigation, particularly those based on accurate scatter models, and iterative reconstruction-based scatter compensation approaches. The main difference among the correction methods is the way in which the scatter component in the selected energy window is estimated. Monte Carlo methods give further insight and might in themselves offer a possible correction procedure. Methods: Five scatter correction methods are compared in this paper where applicable. The dual-energy window (DEW) technique, the convolution-subtraction (CVS) method, two variants of the Monte Carlo-based scatter correction technique (MCBSC1 and MCBSC2) and our newly developed statistical reconstruction-based scatter correction (SRBSC) method. These scatter correction techniques are evaluated using Monte Carlo simulation studies, experimental phantom measurements...

  16. Modeling and comparative study of various detection techniques for FMCW LIDAR using optisystem

    Science.gov (United States)

    Elghandour, Ahmed H.; Ren, Chen D.

    2013-09-01

    In this paper we investigated the different detection techniques especially direct detection, coherent heterodyne detection and coherent homodyne detection on FMCW LIDAR system using Optisystem package. A model for target, propagation channel and various detection techniques were developed using Optisystem package and then a comparative study among various detection techniques for FMCW LIDAR systems is done analytically and simulated using the developed model. Performance of direct detection, heterodyne detection and homodyne detection for FMCW LIDAR system was calculated and simulated using Optisystem package. The output simulated performance was checked using simulated results of MATLAB simulator. The results shows that direct detection is sensitive to the intensity of the received electromagnetic signal and has low complexity system advantage over the others detection architectures at the expense of the thermal noise is the dominant noise source and the sensitivity is relatively poor. In addition to much higher detection sensitivity can be achieved using coherent optical mixing which is performed by heterodyne and homodyne detection.

  17. Well-defined functional mesoporous silica/polymer hybrids prepared by an ICAR ATRP technique integrated with bio-inspired polydopamine chemistry for lithium isotope separation.

    Science.gov (United States)

    Liu, Yuekun; Liu, Xuegang; Ye, Gang; Song, Yang; Liu, Fei; Huo, Xiaomei; Chen, Jing

    2017-05-09

    Mesoporous silica/polymer hybrids with well-preserved mesoporosity were prepared by integrating the initiators for continuous activator regeneration (ICAR) atom transfer radical polymerization (ATRP) technique with the bio-inspired polydopamine (PDA) chemistry. By manipulating the auto-oxidative polymerization of dopamine, uniform PDA layers were deposited on the surfaces and pore walls of ordered mesoporous silicas (OMSs), thereby promoting the immobilization of ATRP initiators. Poly(glycidyl methacrylate) (PGMA) brushes were then grown from the OMSs by using the ICAR ATRP technique. The evolution of the mesoporous silica/polymer hybrids during synthesis, in terms of morphology, structure, surface and porous properties, was detailed. And, parameters influencing the controlled growth of polymer chains in the ICAR ATRP system were studied. Taking advantage of the abundant epoxy groups in the PGMA platform, post-functionalization of the mesoporous silica/polymer hybrids by the covalent attachment of macrocyclic ligands for the adsorptive separation of lithium isotopes was realized. Adsorption behavior of the functionalized hybrids toward lithium ions was fully investigated, highlighting the good selectivity, and effects of temperature, solvent and counter ions. The ability for lithium isotope separation was evaluated. A higher separation factor could be obtained in systems with softer counter anions and lower polarity solvents. More importantly, due to the versatility of the ICAR ATRP technique, combined with the non-surface specific PDA chemistry, the methodology established in this work would provide new opportunities for the preparation of advanced organic-inorganic porous hybrids for broadened applications.

  18. Osteotome versus conventional drilling technique for implant site preparation: a comparative study in the rabbit.

    Science.gov (United States)

    Nóbrega, Ana Rita; Norton, Ana; Silva, José Antonio; Silva, José Pedro Dias; Branco, Fernando Morais; Anitua, Eduardo

    2012-06-01

    The aim of this research was to study the influence of the osteotome technique on insertion torque and stability values when compared with conventional surgical drilling of the implant site. A total of 20 implants (4-mm diameter, 8.5-mm long) were placed in the distal femural condyle of 10 New Zealand White rabbits. The implant sites were prepared by using either the conventional drilling technique as a control group (group A) or the osteotome technique (group B). Cutting torque and resonance frequency analyses (RFAs) were conducted at and after implant placement. The resulting values were subjected to correlation and comparative analyses between groups. Insertion torque measurements were conducted at three different levels of implant insertion: crestal, middle, and apical. Group B showed higher mean insertion torque and RFA values (P .05). Bone condensation before implant insertion in low-density bone led to higher mean insertion torque and RFA values. Within the limits of this experimental study, a benefit in using the osteotome technique was observed when dealing with low-density bone. Bone condensation can improve primary stabilization of implants.

  19. A comparative study on change vector analysis based change detection techniques

    Indian Academy of Sciences (India)

    Sartajvir Singh; Rajneesh Talwar

    2014-12-01

    Detection of Earth surface changes are essential to monitor regional climatic, snow avalanche hazard analysis and energy balance studies that occur due to air temperature irregularities. Geographic Information System (GIS) enables such research activities to be carried out through change detection analysis. From this viewpoint, different change detection algorithms have been developed for land-use land-cover (LULC) region. Among the different change detection algorithms, change vector analysis (CVA) has level headed capability of extracting maximuminformation in terms of overall magnitude of change and the direction of change between multispectral bands from multi-temporal satellite data sets. Since past two–three decades, many effective CVA based change detection techniques e.g., improved change vector analysis (ICVA), modified change vector analysis (MCVA) and change vector analysis posterior-probability space (CVAPS), have been developed to overcome the difficulty that exists in traditional change vector analysis (CVA). Moreover, many integrated techniques such as cross correlogram spectral matching (CCSM) based CVA. CVA uses enhanced principal component analysis (PCA) and inverse triangular (IT) function, hyper-spherical direction cosine (HSDC), and median CVA (m-CVA), as an effective LULC change detection tools. This paper comprises a comparative analysis on CVA based change detection techniques such as CVA, MCVA, ICVA and CVAPS. This paper also summarizes the necessary integrated CVA techniques along with their characteristics, features and shortcomings. Based on experiment outcomes, it has been evaluated that CVAPS technique has greater potential than other CVA techniques to evaluate the overall transformed information over three differentMODerate resolution Imaging Spectroradiometer (MODIS) satellite data sets of different regions. Results of this study are expected to be potentially useful for more accurate analysis of LULC changes which will, in turn

  20. Adjustable versus non-adjustable suture techniques for concomitant horizontal strabismus: a comparative study

    Directory of Open Access Journals (Sweden)

    Galton C. Vasconcelos

    2015-12-01

    Full Text Available ABSTRACT Purpose: To compare the surgical results of adjustable and non-adjustable horizontal strabismus surgery for concomitant horizontal strabismus. Methods: The charts of 231 patients, who underwent horizontal strabismus surgery, selected using probabilistic sampling, were retrospectively reviewed. Patients were divided into two groups according to the surgical technique used and strabismus type. The adjustable suture technique was used for 107 patients (Group 1, and non-adjustable or conventional surgery was performed in the remaining 124 patients (Group 2. Patients with esotropia (ET or exotropia (XT of 5 PD, syndromes, restrictive or paretic strabismus, reoperations, botulinum toxin injection, and patients postoperatively followed up for 50% was present in all subgroups. Significant differences between strabismus groups submitted to adjustable technique and non-adjustable on postoperative day 1 were observed (p=0.00 for ET and p=0.01 for XT and at the last visit for the XT group with a follow-up of at least 1 year (p=0.05. Conclusion: The adjustable suture technique produced a higher success rate than non-adjustable strabismus surgery for both ET and XT groups on postoperative day 1. For XT patients, the adjustable suture technique appears to produce better surgical results than non-adjustable surgery, when the surgical goal is long-lasting maintenance of a small hypercorrection.

  1. Evaluation nutritionnelle comparative des fruits de trois hybrides de bananiers (CRBP 39, FHIA 17 et FHIA 21) avec ceux de la variété Orishele

    OpenAIRE

    Ocho-Anin Atchibri, L.; Coulibaly, S.; Kouadio Kouakou, KA.; Kouamé, G.; Meité, A.

    2012-01-01

    Nutritional Values of Three Plantain Hybrids CRBP 39, FHIA 17 and FHIA 21 by Comparing them with that of Orishele Variety. This study is to estimate the nutritional values of plantain hybrids CRBP 39, FHIA 17 and FHIA 21 by comparing them with that of Orishele variety as control. For this purpose, Wistar rats weighing in average 82 ± 1.23 g were fed with these plantain diets. The results show good nutritional values of these plantain hybrids. Their daily ingestions by rats vary from 8.41 ± 0....

  2. Hybrid-Thresholding based Image Super-Resolution Technique by the use of Triplet Half-Band Wavelets

    Science.gov (United States)

    Chopade, Pravin B.; Rahulkar, Amol D.; Patil, Pradeep M.

    2016-12-01

    This paper presents a modified image super-resolution scheme based on the wavelet coefficients hybrid-thresholding by the use of triplet half-band wavelets (THW) derived from the generalized half-band polynomial. At first, discrete wavelet transform (DWT) is obtained from triplet half-band kernels and it applied on the low-resolution image to obtain the high frequency sub-bands. These high frequency sub-bands and the original low-resolution image are interpolated to enhance the resolution. Second, stationary wavelet transform is obtained by using THW, which is employed to minimize the loss due to the use of DWT. In addition, hybrid thresholding scheme on wavelet coefficients scheme is proposed on these estimated high-frequency sub-bands in order to reduce the spatial domain noise. These sub-bands are combined together by inverse discrete wavelet transform obtained from THW to generate a high-resolution image. The proposed approach is validated by comparing the quality metrics with existing filter banks and well-known super-resolution scheme.

  3. A sixth order hybrid finite difference scheme based on the minimized dispersion and controllable dissipation technique

    Science.gov (United States)

    Sun, Zhen-sheng; Luo, Lei; Ren, Yu-xin; Zhang, Shi-ying

    2014-08-01

    The dispersion and dissipation properties of a scheme are of great importance for the simulation of flow fields which involve a broad range of length scales. In order to improve the spectral properties of the finite difference scheme, the authors have previously proposed the idea of optimizing the dispersion and dissipation properties separately and a fourth order scheme based on the minimized dispersion and controllable dissipation (MDCD) technique is thus constructed [29]. In the present paper, we further investigate this technique and extend it to a sixth order finite difference scheme to solve the Euler and Navier-Stokes equations. The dispersion properties of the scheme is firstly optimized by minimizing an elaborately designed integrated error function. Then the dispersion-dissipation condition which is newly derived by Hu and Adams [30] is introduced to supply sufficient dissipation to damp the unresolved wavenumbers. Furthermore, the optimized scheme is blended with an optimized Weighted Essentially Non-Oscillation (WENO) scheme to make it possible for the discontinuity-capturing. In this process, the approximation-dispersion-relation (ADR) approach is employed to optimize the spectral properties of the nonlinear scheme to yield the true wave propagation behavior of the finite difference scheme. Several benchmark test problems, which include broadband fluctuations and strong shock waves, are solved to validate the high-resolution, the good discontinuity-capturing capability and the high-efficiency of the proposed scheme.

  4. A Hybrid Approach for Detecting Suspicious Accounts in Money Laundering Using Data Mining Techniques

    Directory of Open Access Journals (Sweden)

    Ch. Suresh

    2016-05-01

    Full Text Available Money laundering is a criminal activity to disguise black money as white money. It is a process by which illegal funds and assets are converted into legitimate funds and assets. Money Laundering occurs in three stages: Placement, Layering, and Integration. It leads to various criminal activities like Political corruption, smuggling, financial frauds, etc. In India there is no successful Anti Money laundering techniques which are available. The Reserve Bank of India (RBI, has issued guidelines to identify the suspicious transactions and send it to Financial Intelligence Unit (FIU. FIU verifies if the transaction is actually suspicious or not. This process is time consuming and not suitable to identify the illegal transactions that occurs in the system. To overcome this problem we propose an efficient Anti Money Laundering technique which can able to identify the traversal path of the Laundered money using Hash based Association approach and successful in identifying agent and integrator in the layering stage of Money Laundering by Graph Theoretic Approach.

  5. A novel technique to neutralize the Yawing moment due to asymmetric thrust in a hybrid buoyant aircraft

    Science.gov (United States)

    Haque, Anwar U.; Asrar, Waqar; Omar, Ashraf A.; Sulaeman, Erwin; J. S Ali, Mohamed

    2016-03-01

    Dorsal fin is used in swimming animals like shark for the generation of thrust as well as to meet the requirement of the lateral stability. In the case of aircraft, rudders are normally used for the said requirement. In the present work, this nature inspired idea is explored for its application to neutralize the unavoidable asymmetric thrust produced by the twin engines of a hybrid buoyant aircraft. First, the estimation of asymmetric thrust is obtained with the help of analytical techniques for maximum thrust condition at 4 degree angle of attack. The moment generated by it is utilized for the sizing of a dorsal fin which looks similar to a tapered wing and is placed aft of the center of gravity. Wind tunnel testing at subsonic speed is carried out to explore the design features of this rotatable dorsal fin. It is found that a small rotation of 5 degree can generate the required moment. However, such rotation requires a complete pneumatic/electro-mechanical system and an alternative of it is to use a cambered airfoil for the dorsal fin installed at fixed location. Such a flow controlling device can also be used as an antenna mast, which is commonly installed out the fuselage of the aircraft for communication purposes. Moreover, by incorporating this technique, a pilot doesn't have to put an extra effort to make the aircraft stable in the presence of side wind.

  6. Research on Theories and Techniques of Irrigation for Safeguarding Seed Production of Two-Line Hybrid Rice

    Institute of Scientific and Technical Information of China (English)

    ZOU Jiang-shi; L(U) Chuan-gen; YAO Ke-min; HU Ning; XIA Shi-jian

    2006-01-01

    By inducing frequency, intensity and duration of lower temperature in the middle and last ten-day periods in August in the rice-growing areas of southern China, increasing temperature for safe seed production was defined as 2℃. During the sensitive period of fertility, characters of panicle height and canopy structure of TGMS rice, Pei'ai64S, were measured.Results showed that temperature changes caused by irrigation in fields were below 40 cm of rice plant, and heating effect was significant at 20 cm when the temperature was increased by 3.1℃. For the present study, the following irrigation techniques were put forth: the water depth of 15-20 cm, current water used, irrigating after 17:00 and bailing at 10:00 in sunny or cloudy weather, irrigating on whole day, in shady or rainy weather, increasing inflows and outflows in large fields. In the present experiment, pollen fertility and self-fertilized seed setting rate accepted that the techniques were feasible and effective for against lower temperature and safeguarding seed production of two-line hybrid rice.

  7. A novel technique to neutralize the Yawing moment due to asymmetric thrust in a hybrid buoyant aircraft

    Directory of Open Access Journals (Sweden)

    Haque Anwar U

    2016-01-01

    Full Text Available Dorsal fin is used in swimming animals like shark for the generation of thrust as well as to meet the requirement of the lateral stability. In the case of aircraft, rudders are normally used for the said requirement. In the present work, this nature inspired idea is explored for its application to neutralize the unavoidable asymmetric thrust produced by the twin engines of a hybrid buoyant aircraft. First, the estimation of asymmetric thrust is obtained with the help of analytical techniques for maximum thrust condition at 4 degree angle of attack. The moment generated by it is utilized for the sizing of a dorsal fin which looks similar to a tapered wing and is placed aft of the center of gravity. Wind tunnel testing at subsonic speed is carried out to explore the design features of this rotatable dorsal fin. It is found that a small rotation of 5 degree can generate the required moment. However, such rotation requires a complete pneumatic/electro-mechanical system and an alternative of it is to use a cambered airfoil for the dorsal fin installed at fixed location. Such a flow controlling device can also be used as an antenna mast, which is commonly installed out the fuselage of the aircraft for communication purposes. Moreover, by incorporating this technique, a pilot doesn’t have to put an extra effort to make the aircraft stable in the presence of side wind.

  8. Systematic review of robotic surgery in gynecology: robotic techniques compared with laparoscopy and laparotomy.

    Science.gov (United States)

    Gala, Rajiv B; Margulies, Rebecca; Steinberg, Adam; Murphy, Miles; Lukban, James; Jeppson, Peter; Aschkenazi, Sarit; Olivera, Cedric; South, Mary; Lowenstein, Lior; Schaffer, Joseph; Balk, Ethan M; Sung, Vivian

    2014-01-01

    The Society of Gynecologic Surgeons Systematic Review Group performed a systematic review of both randomized and observational studies to compare robotic vs nonrobotic surgical approaches (laparoscopic, abdominal, and vaginal) for treatment of both benign and malignant gynecologic indications to compare surgical and patient-centered outcomes, costs, and adverse events associated with the various surgical approaches. MEDLINE and the Cochrane Central Register of Controlled Trials were searched from inception to May 15, 2012, for English-language studies with terms related to robotic surgery and gynecology. Studies of any design that included at least 30 women who had undergone robotic-assisted laparoscopic gynecologic surgery were included for review. The literature yielded 1213 citations, of which 97 full-text articles were reviewed. Forty-four studies (30 comparative and 14 noncomparative) met eligibility criteria. Study data were extracted into structured electronic forms and reconciled by a second, independent reviewer. Our analysis revealed that, compared with open surgery, robotic surgery consistently confers shorter hospital stay. The proficiency plateau seems to be lower for robotic surgery than for conventional laparoscopy. Of the various gynecologic applications, there seems to be evidence that renders robotic techniques advantageous over traditional open surgery for management of endometrial cancer. However, insofar as superiority, conflicting data are obtained when comparing robotics vs laparoscopic techniques. Therefore, the specific method of minimally invasive surgery, whether conventional laparoscopy or robotic surgery, should be tailored to patient selection, surgeon ability, and equipment availability.

  9. Endoscopic button gastrostomy: Comparing a sutured endoscopic approach to the current techniques.

    Science.gov (United States)

    Gonzalez-Hernandez, Jessica; Daoud, Yahya; Fischer, Anne C; Barth, Bradley; Piper, Hannah G

    2016-01-01

    Button gastrostomy is the preferred feeding device in children and can be placed open or laparoscopically (LBG). Alternatively, a percutaneous endoscopic gastrostomy (PEG) can be placed initially and exchanged for a button. Endoscopic-assisted button gastrostomy (EBG) combines both techniques, using only one incision and suturing the stomach to the abdominal wall. The long-term outcomes and potential costs for EBG were compared to other techniques. Children undergoing EBG, LBG, and PEG (2010-2013) were compared. Patient demographics, procedure duration/complications, and clinic and emergency room (ER) visits for an eight-week follow-up period were compared. Patient demographics were similar (32 patients/group). Mean procedure time (min) for EBG was 38 ± 9, compared to 58 ± 20 for LBG and 31 ± 10 for PEG (pbutton gastrostomy. EBG is safe and comparable to LBG and PEG in terms of complications. It has a shorter procedure time than LBG and does not require laparoscopy, device exchange, or subsequent fluoroscopic confirmation, potentially reducing costs. Copyright © 2016 Elsevier Inc. All rights reserved.

  10. Comparative Genomics and Characterization of Hybrid Shigatoxigenic and Enterotoxigenic Escherichia coli (STEC/ETEC) Strains

    Science.gov (United States)

    Nyholm, Outi; Halkilahti, Jani; Wiklund, Gudrun; Okeke, Uche; Paulin, Lars; Auvinen, Petri; Haukka, Kaisa; Siitonen, Anja

    2015-01-01

    Background Shigatoxigenic Escherichia coli (STEC) and enterotoxigenic E. coli (ETEC) cause serious foodborne infections in humans. These two pathogroups are defined based on the pathogroup-associated virulence genes: stx encoding Shiga toxin (Stx) for STEC and elt encoding heat-labile and/or est encoding heat-stable enterotoxin (ST) for ETEC. The study investigated the genomics of STEC/ETEC hybrid strains to determine their phylogenetic position among E. coli and to define the virulence genes they harbor. Methods The whole genomes of three STEC/ETEC strains possessing both stx and est genes were sequenced using PacBio RS sequencer. Two of the strains were isolated from the patients, one with hemolytic uremic syndrome, and one with diarrhea. The third strain was of bovine origin. Core genome analysis of the shared chromosomal genes and comparison with E. coli and Shigella spp. reference genomes was performed to determine the phylogenetic position of the STEC/ETEC strains. In addition, a set of virulence genes and ETEC colonization factors were extracted from the genomes. The production of Stx and ST were studied. Results The human STEC/ETEC strains clustered with strains representing ETEC, STEC, enteroaggregative E. coli, and commensal and laboratory-adapted E. coli. However, the bovine STEC/ETEC strain formed a remote cluster with two STECs of bovine origin. All three STEC/ETEC strains harbored several other virulence genes, apart from stx and est, and lacked ETEC colonization factors. Two STEC/ETEC strains produced both toxins and one strain Stx only. Conclusions This study shows that pathogroup-associated virulence genes of different E. coli can co-exist in strains originating from different phylogenetic lineages. The possibility of virulence genes to be associated with several E. coli pathogroups should be taken into account in strain typing and in epidemiological surveillance. Development of novel hybrid E. coli strains may cause a new public health risk, which

  11. Comparative Genomics and Characterization of Hybrid Shigatoxigenic and Enterotoxigenic Escherichia coli (STEC/ETEC Strains.

    Directory of Open Access Journals (Sweden)

    Outi Nyholm

    Full Text Available Shigatoxigenic Escherichia coli (STEC and enterotoxigenic E. coli (ETEC cause serious foodborne infections in humans. These two pathogroups are defined based on the pathogroup-associated virulence genes: stx encoding Shiga toxin (Stx for STEC and elt encoding heat-labile and/or est encoding heat-stable enterotoxin (ST for ETEC. The study investigated the genomics of STEC/ETEC hybrid strains to determine their phylogenetic position among E. coli and to define the virulence genes they harbor.The whole genomes of three STEC/ETEC strains possessing both stx and est genes were sequenced using PacBio RS sequencer. Two of the strains were isolated from the patients, one with hemolytic uremic syndrome, and one with diarrhea. The third strain was of bovine origin. Core genome analysis of the shared chromosomal genes and comparison with E. coli and Shigella spp. reference genomes was performed to determine the phylogenetic position of the STEC/ETEC strains. In addition, a set of virulence genes and ETEC colonization factors were extracted from the genomes. The production of Stx and ST were studied.The human STEC/ETEC strains clustered with strains representing ETEC, STEC, enteroaggregative E. coli, and commensal and laboratory-adapted E. coli. However, the bovine STEC/ETEC strain formed a remote cluster with two STECs of bovine origin. All three STEC/ETEC strains harbored several other virulence genes, apart from stx and est, and lacked ETEC colonization factors. Two STEC/ETEC strains produced both toxins and one strain Stx only.This study shows that pathogroup-associated virulence genes of different E. coli can co-exist in strains originating from different phylogenetic lineages. The possibility of virulence genes to be associated with several E. coli pathogroups should be taken into account in strain typing and in epidemiological surveillance. Development of novel hybrid E. coli strains may cause a new public health risk, which challenges the

  12. Comparative molecular modeling study of Arabidopsis NADPH-dependent thioredoxin reductase and its hybrid protein.

    Directory of Open Access Journals (Sweden)

    Yuno Lee

    Full Text Available 2-Cys peroxiredoxins (Prxs play important roles in the protection of chloroplast proteins from oxidative damage. Arabidopsis NADPH-dependent thioredoxin reductase isotype C (AtNTRC was identified as efficient electron donor for chloroplastic 2-Cys Prx-A. There are three isotypes (A, B, and C of thioredoxin reductase (TrxR in Arabidopsis. AtNTRA contains only TrxR domain, but AtNTRC consists of N-terminal TrxR and C-terminal thioredoxin (Trx domains. AtNTRC has various oligomer structures, and Trx domain is important for chaperone activity. Our previous experimental study has reported that the hybrid protein (AtNTRA-(Trx-D, which was a fusion of AtNTRA and Trx domain from AtNTRC, has formed variety of structures and shown strong chaperone activity. But, electron transfer mechanism was not detected at all. To find out the reason of this problem with structural basis, we performed two different molecular dynamics (MD simulations on AtNTRC and AtNTRA-(Trx-D proteins with same cofactors such as NADPH and flavin adenine dinucleotide (FAD for 50 ns. Structural difference has found from superimposition of two structures that were taken relatively close to average structure. The main reason that AtNTRA-(Trx-D cannot transfer the electron from TrxR domain to Trx domain is due to the difference of key catalytic residues in active site. The long distance between TrxR C153 and disulfide bond of Trx C387-C390 has been observed in AtNTRA-(Trx-D because of following reasons: i unstable and unfavorable interaction of the linker region, ii shifted Trx domain, and iii different or weak interface interaction of Trx domains. This study is one of the good examples for understanding the relationship between structure formation and reaction activity in hybrid protein. In addition, this study would be helpful for further study on the mechanism of electron transfer reaction in NADPH-dependent thioredoxin reductase proteins.

  13. Optimizing an Industrial Scale Naphtha Catalytic Reforming Plant Using a Hybrid Artificial Neural Network and Genetic Algorithm Technique

    Directory of Open Access Journals (Sweden)

    Sepehr Sadighi

    2015-07-01

    Full Text Available In this paper, a hybrid model for estimating the activity of a commercial Pt-Re/Al2O3 catalyst in an industrial scale heavy naphtha catalytic-reforming unit (CRU is presented. This model is also capable of predicting research octane number (RON and yield of gasoline. In the proposed model, called DANN, the decay function of heterogeneous catalysts is combined with a recurrent-layer artificial neural network. During a life cycle (919 days, fifty-eight points are selected for building and training the DANN (60%, nineteen data points for testing (20%, and the remained ones for validating steps. Results show that DANN can acceptably estimate the activity of catalyst during its life in consideration of all process variables. Moreover, it is confirmed that the proposed model is capable of predicting RON and yield of gasoline for unseen (validating data with AAD% (average absolute deviation of 0.272% and 0.755%, respectively. After validating the model, the octane barrel level (OCB of the plant is maximized by manipulating the inlet temperature of reactors, and hydrogen to hydrocarbon molar ratio whilst all process limitations are taken into account. During a complete life cycle results show that the decision variables, generated by the optimization program, can increase the RON, process yield and OCB of CRU to about 1.15%, 3.21%, and 4.56%, respectively. © 2015 BCREC UNDIP. All rights reserved.Received: 27th July 2014; Revised: 31st May 2015; Accepted: 31th May 2015 How to Cite: Sadighi, S., Mohaddecy, R.S., Norouzian, A. (2015. Optimizing an Industrial Scale Naphtha Catalytic Reforming Plant Using a Hybrid Artificial Neural Network and Genetic Algorithm Technique. Bulletin of Chemical Reaction Engineering & Catalysis, 10(2: 210-220. (doi:10.9767/bcrec.10.2.7171.210-220 Permalink/DOI: http://dx.doi.org/10.9767/bcrec.10.2.7171.210-220  

  14. Recent advances in knowledge-based paradigms and applications enhanced applications using hybrid artificial intelligence techniques

    CERN Document Server

    Jain, Lakhmi

    2014-01-01

    This book presents carefully selected contributions devoted to the modern perspective of AI research and innovation. This collection covers several areas of applications and motivates new research directions. The theme across all chapters combines several domains of AI research , Computational Intelligence and Machine Intelligence including an introduction to  the recent research and models. Each of the subsequent chapters reveals leading edge research and innovative solution that employ AI techniques with an applied perspective. The problems include classification of spatial images, early smoke detection in outdoor space from video images, emergent segmentation from image analysis, intensity modification in images, multi-agent modeling and analysis of stress. They all are novel pieces of work and demonstrate how AI research contributes to solutions for difficult real world problems that benefit the research community, industry and society.

  15. Rapid full Mueller matrix imaging polarimetry based on the hybrid phase modulation technique

    Science.gov (United States)

    Han, Chien-Yuan; Du, Cheng-You; Jhou, Jhe-Yi

    2017-01-01

    In this work, we present a novel method of Mueller matrix imaging polarimetry, which comprises dual liquid crystal variable retarders at the polarization generation portion and a photoelastic modulator at the polarization analysis portion. The light source can be operated either in the continuous mode, which provides an in-situ calibration process for the liquid crystal variable retarders, or in the pulse mode to deduce the full two-dimensional Mueller matrix with 16 images from the camera. We measured the Mueller matrix images of air as a standard test, as well as a quarter wave plate to determine its azimuthal angle and phase retardation by the polar decomposition technique. Finally, the decomposed Mueller matrix images of a biopolymer specimen with the conformational change produced by heat treatment are presented.

  16. MULTILEVEL APPROACH OF CBIR TECHNIQUES FOR VEGETABLE CLASSIFICATION USING HYBRID IMAGE FEATURES

    Directory of Open Access Journals (Sweden)

    D. Latha

    2016-02-01

    Full Text Available CBIR is a technique to retrieve images semantically relevant to query image from an image database. The challenge in CBIR is to develop a method that should increase the retrieval accuracy and reduce the retrieval time. In order to improve the retrieval accuracy and runtime, a multilevel CBIR approach is proposed in this paper. In the first level, the color attributes like mean and standard deviations are proposed to calculate on HSV color space to retrieve the images with minimum disparity distance from the database. In order to minimize search area, in the second level Local Ternary Pattern is proposed on images which were selected from the first level. Experimental results and comparisons demonstrate the superiority of the proposed approach.

  17. A Hybrid Model for the Mid-Long Term Runoff Forecasting by Evolutionary Computaion Techniques

    Institute of Scientific and Technical Information of China (English)

    Zou Xiu-fen; Kang Li-shan; Cae Hong-qing; Wu Zhi-jian

    2003-01-01

    The mid-long term hydrology forecasting is one of most challenging problems in hydrological studies. This paper proposes an efficient dynamical system prediction model using evolutionary computation techniques. The new model overcomes some disadvantages of conventional hydrology fore casting ones. The observed data is divided into two parts: the slow "smooth and steady" data, and the fast "coarse and fluctuation" data. Under the divide and conquer strategy, the behavior of smooth data is modeled by ordinary differential equations based on evolutionary modeling, and that of the coarse data is modeled using gray correlative forecasting method. Our model is verified on the test data of the mid-long term hydrology forecast in tbe northeast region of China. The experimental results show that the model is superior to gray system prediction model (GSPM).

  18. A comparative study between standard dry needling technique and rapid dry needling technique on active gluteus medius muscle trigger points

    OpenAIRE

    2012-01-01

    M.Tech. This study aimed to determine the difference between the standard dry needling technique versus the rapid dry needling technique with regards to which technique would provide quicker relief of symptoms, as measured by an increase in participant’s pressure tolerance and range of motion and a decrease in subjective pain. Subjectively it was seen that both groups had a statistical decrease in the participants perceived pain with the Oswestry Disability Index, the McGill’s Pain Questio...

  19. Comparative study of manual liquid-based cytology (MLBC) technique and direct smear technique (conventional) on fine-needle cytology/fine-needle aspiration cytology samples.

    Science.gov (United States)

    Pawar, Prajkta Suresh; Gadkari, Rasika Uday; Swami, Sunil Y; Joshi, Anil R

    2014-04-01

    Liquid-based cytology technique enables cells to be suspended in a liquid medium and spread in a monolayer, making better morphological assessment. Automated techniques have been widely used, but limited due to cost and availability. The aim was to establish manual liquid-based cytology (MLBC) technique on fine-needle aspiration cytology (FNAC) material and compare its results with conventional technique. In this study, we examined cells trapped in needles hub used for the collection of FNAC samples. 50 cases were examined by the MLBC technique and compared with the conventional FNAC technique. By centrifugation, sediment was obtained and imprint was taken on defined area. Papanicolaou (Pap) and May-Grünwald Giemsa (MGG) staining was done. Direct smears and MLBC smears were compared for cellularity, background, cellular preservation, and nuclear preservation. Slides were diagnosed independently by two cytologists with more than 5 years' experience. Standard error of proportion was used for statistical analysis. Cellularity was low in MLBC as compared with conventional smears, which is expected as remnant material in the needle hub was used. Nuclei overlap to a lesser extent and hemorrhage and necrosis was reduced, so cell morphology can be better studied in the MLBC technique. P value obtained was <0.05. This MLBC technique gives results comparable to the conventional technique with better morphology. In a set up where aspirators are learners, this technique will ensure adequacy due to remnant in needle hub getting processed.

  20. Comparative gene mapping in cattle, Indian muntjac, and Chinese muntjac by fluorescence in situ hybridization.

    Science.gov (United States)

    Murmann, Andrea E; Mincheva, Antoaneta; Scheuermann, Markus O; Gautier, Mathieu; Yang, Fentang; Buitkamp, Johannes; Strissel, Pamela L; Strick, Reiner; Rowley, Janet D; Lichter, Peter

    2008-11-01

    The Indian muntjac (Muntiacus muntjak vaginalis) has a karyotype of 2n = 6 in the female and 2n = 7 in the male. The karyotypic evolution of Indian muntjac via extensive tandem fusions and several centric fusions are well documented by molecular cytogenetic studies mainly utilizing chromosome paints. To achieve higher resolution mapping, a set of 42 different genomic clones coding for 37 genes and the nucleolar organizer region were used to examine homologies between the cattle (2n = 60), human (2n = 46), Indian muntjac (2n = 6/7) and Chinese muntjac (2n = 46) karyotypes. These genomic clones were mapped by fluorescence in situ hybridization (FISH). Localization of genes on all three pairs of M. m. vaginalis chromosomes and on the acrocentric chromosomes of M. reevesi allowed not only the analysis of the evolution of syntenic regions within the muntjac genus but also allowed a broader comparison of synteny with more distantly related species, such as cattle and human, to shed more light onto the evolving genome organization.

  1. Integrating Internet Video Conferencing Techniques and Online Delivery Systems with Hybrid Classes to Enhance Student Interaction and Learning in Accelerated Programs

    Science.gov (United States)

    Beckwith, E. George; Cunniff, Daniel T.

    2009-01-01

    Online course enrollment has increased dramatically over the past few years. The authors cite the reasons for this rapid growth and the opportunities open for enhancing teaching/learning techniques such as video conferencing and hybrid class combinations. The authors outlined an example of an accelerated learning, eight-class session course…

  2. Fabrication of 2×2 Thermo-Optic Switches with Organic-Inorganic Hybrid Materials Prepared by Sol-Gel Technique

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    2×2 Mach-Zehnder interferometric thermo-optic switch was fabricated with organic/inorganic hybrid materials by sol-gel technique and direct UV patterning. The switching time of device was measured to be 4.2 ms and switching power 9.3 mW.

  3. Wound Measurement Techniques: Comparing the Use of Ruler Method, 2D Imaging and 3D Scanner.

    Science.gov (United States)

    Shah, Aj; Wollak, C; Shah, J B

    2013-12-01

    The statistics on the growing number of non-healing wounds is alarming. In the United States, chronic wounds affect 6.5 million patients. An estimated US $25 billion is spent annually on treatment of chronic wounds and the burden is rapidly growing due to increasing health care costs, an aging population and a sharp rise in the incidence of diabetes and obesity worldwide.(1) Accurate wound measurement techniques will help health care personnel to monitor the wounds which will indirectly help improving care.(7,9) The clinical practice of measuring wounds has not improved even today.(2,3) A common method like the ruler method to measure wounds has poor interrater and intrarater reliability.(2,3) Measuring the greatest length by the greatest width perpendicular to the greatest length, the perpendicular method, is more valid and reliable than other ruler based methods.(2) Another common method like acetate tracing is more accurate than the ruler method but still has its disadvantages. These common measurement techniques are time consuming with variable inaccuracies. In this study, volumetric measurements taken with a non-contact 3-D scanner are benchmarked against the common ruler method, acetate grid tracing, and 2-D image planimetry volumetric measurement technique. A liquid volumetric fill method is used as the control volume. Results support the hypothesis that the 3-D scanner consistently shows accurate volumetric measurements in comparison to standard volumetric measurements obtained by the waterfill technique (average difference of 11%). The 3-D scanner measurement technique was found more reliable and valid compared to other three techniques, the ruler method (average difference of 75%), acetate grid tracing (average difference of 41%), and 2D planimetric measurements (average difference of 52%). Acetate tracing showed more accurate measurements compared to the ruler method (average difference of 41% (acetate tracing) compared to 75% (ruler method)). Improving

  4. Contrast-Enhanced MR Angiography (CEMRA) in Peripheral Arterial Occlusive Disease (PAOD): conventional moving table technique versus hybrid technique; Kontrastverstaerkte MR-Angiographie (CEMRA) bei peripherer AVK (pAVK): konventionelle Tischverschiebetechnik versus Hybrid-Technik

    Energy Technology Data Exchange (ETDEWEB)

    Kalle, T. von; Gerlach, A.; Hatopp, A.; Klinger, S.; Prodehl, P.; Arlat, I.P. [Katharinenhospital, Stuttgart (Germany). Radiologisches Inst.

    2004-01-01

    Patients and Methods: 80 patients (males n = 60, females n = 20, median age = 70 years, diabetics n = 27) with PAOD were examined with a 1,5T system (40 mT/m) using a dedicated phased array peripheral vascular coil. Protocol A consisted of a single injection of Gd-BOPTA with consecutive craniocaudal image acquisition and protocol B of two injections, with the first injection of Gd-BOPTA followed by image acquisition of the popliteocrural and pedal segments and the second injection followed by acquiring the aortoiliac and femoral segments (hybrid technique). The evaluation of the arterial system was directed to the iliac, femoral, popliteocrural and pedal arteries. Results: The visualization of the entire aortopedal vascular system was of diagnostically good or satisfactory quality in 16 of 40 patients using protocol A and in 29 of 40 patients using protocol B (iliac 40 vs. 37, femoral 40 vs. 40, popliteocrural 35 vs. 37, pedal 16 vs. 29); without the pedal station the number increased to 35 of 40 patients for both protocols. The reason of diagnostic limitations was an arteriovenous overlap in 24 of 80 cases, with 19 of 40 cases for protocol A and 5 of 40 for protocol B, located exclusively in the cruropedal region. Conclusion: Moving table hybrid CEMRA is superior to conventional technique in craniocaudal direction by producing less venous overlap of arteries and is especially more suitable for the diagnostic evaluation of the cruropedal region. (orig.) [German] Patienten und Methodik: Untersucht wurden 80 Patienten (maennl. n = 60, weibl. n = 20, mittl. Alter 70 J., Diabetiker n = 27) mit pAVK an einem 1,5-Tesla-Geraet (40 mT/m) mit dedizierter Phased-Array-Oberflaechen-Gefaessspule. Protokoll A beinhaltete eine Kontrastmittel-Injektion (Gd-BOPTA) mit konsekutiver kraniokaudaler Bildakquisition. In Protokoll B erfolgte die Akquisition zunaechst der Unterschenkel- und Fussetage mittels einer ersten, anschliessend der Abdomen-Becken- und Oberschenkeletage mittels

  5. Hybrid vehicles

    Energy Technology Data Exchange (ETDEWEB)

    West, J.G.W. [Electrical Machines (United Kingdom)

    1997-07-01

    The reasons for adopting hybrid vehicles result mainly from the lack of adequate range from electric vehicles at an acceptable cost. Hybrids can offer significant improvements in emissions and fuel economy. Series and parallel hybrids are compared. A combination of series and parallel operation would be the ideal. This can be obtained using a planetary gearbox as a power split device allowing a small generator to transfer power to the propulsion motor giving the effect of a CVT. It allows the engine to run at semi-constant speed giving better fuel economy and reduced emissions. Hybrid car developments are described that show the wide range of possible hybrid systems. (author)

  6. A COMPARATIVE STUDY ON EFFECTIVENESS OF STATIC STRETCH AND HOLD RELAX TECHNIQUES OVER HAMSTRING FLEXIBILITY

    Directory of Open Access Journals (Sweden)

    N. Vamsidhar

    2014-12-01

    Full Text Available Background: Flexibility is important in prevention of injury, muscular and postural imbalance more over the Hamstring flexibility has a lion share in sports performances and preventing DOMS. Stretching procedures increases the ROM by embarking on biomechanics and Neurologic and molecular mechanics. Hamstrings, the two joint muscle plays a crucial role in two joints integrity and also spine as they are in closed kinematic chain. The hamstring muscles represent the primary flexors of Knee. Hamstrings tightness results in Limits Knee extension when hip is flexed, Posterior Pelvic tilt, and flatten the lumbar spine. Methods: The subjects selected randomly and divided into two groups (Experimental group and control group.30 samples in One group applied with Static Stretch once a day for 3 repetitions 5 days a week for six weeks and 30 samples in other group applied with Hold relax technique once a day for 4 repetitions 5 days a week for six weeks. The knee joint range of motion was measured at the end of every week with Universal goniometer. Results: By comparing the means of Group – I, given Static Stretch and Group – II, given Hold relax Technique for six weeks implied that there is improvement of flexibility in Group – II and the ‘P’ value < 0.01 shows the difference is highly significant. Conclusion: This study concludes that the hold relax Technique method has proved to be better technique then the static stretch for improving hamstring flexibility.

  7. A Hybrid Technique for Real Time License Plate Localization with the aid of FFBPNNAPSO

    Directory of Open Access Journals (Sweden)

    Reji PI

    2016-04-01

    Full Text Available Vehicle License Plate Recognition (VLPR is an imperative constituent in Intelligent Transportation Systems (ITS, which encircles three foremost phases essentially License Plate Localization (LPL, Character Segmentation (CS, Character Recognition (CR. In this paper, we have intended to introduce a novel License Plate Localization algorithm subjected to Artificial Neural Networks (ANN. This proposed scheme involves distinct phases of pre-processing, image de-noising and enhancement, feature extraction, Neural Network training and License Plate detection. Followed by the mining of assorted statistical features, geometrical features, edge features and texture features from the vehicular image, they are given as the input to Feed Forward Back Propagation Neural Network (FFBPNN in order to localize the License Plate. During the training process, the parameters of the FFBPNN will be optimized using the eminent Adaptive Particle Swarm Optimization (APSO algorithm in order to improve the Neural Network convergence performance. The License Plate Localization of our proposed technique is analyzed with simple Feed Forward Back propagation Neural Network (FFBPNN in terms of accuracy, sensitivity and specificity. The experimental outcomes demonstrate that the proposed procedure proficiently accomplishes an extremely high localization rate with elevated specificity (91.3%.

  8. Copy number analysis of the low-copy repeats at the primate NPHP1 locus by array comparative genomic hybridization.

    Science.gov (United States)

    Yuan, Bo; Liu, Pengfei; Rogers, Jeffrey; Lupski, James R

    2016-06-01

    Array comparative genomic hybridization (aCGH) has been widely used to detect copy number variants (CNVs) in both research and clinical settings. A customizable aCGH platform may greatly facilitate copy number analyses in genomic regions with higher-order complexity, such as low-copy repeats (LCRs). Here we present the aCGH analyses focusing on the 45 kb LCRs [1] at the NPHP1 region with diverse copy numbers in humans. Also, the interspecies aCGH analysis comparing human and nonhuman primates revealed dynamic copy number transitions of the human 45 kb LCR orthologues during primate evolution and therefore shed light on the origin of complexity at this locus. The original aCGH data are available at GEO under GSE73962.

  9. A Comparative Study of Anomaly Detection Techniques for Smart City Wireless Sensor Networks.

    Science.gov (United States)

    Garcia-Font, Victor; Garrigues, Carles; Rifà-Pous, Helena

    2016-06-13

    In many countries around the world, smart cities are becoming a reality. These cities contribute to improving citizens' quality of life by providing services that are normally based on data extracted from wireless sensor networks (WSN) and other elements of the Internet of Things. Additionally, public administration uses these smart city data to increase its efficiency, to reduce costs and to provide additional services. However, the information received at smart city data centers is not always accurate, because WSNs are sometimes prone to error and are exposed to physical and computer attacks. In this article, we use real data from the smart city of Barcelona to simulate WSNs and implement typical attacks. Then, we compare frequently used anomaly detection techniques to disclose these attacks. We evaluate the algorithms under different requirements on the available network status information. As a result of this study, we conclude that one-class Support Vector Machines is the most appropriate technique. We achieve a true positive rate at least 56% higher than the rates achieved with the other compared techniques in a scenario with a maximum false positive rate of 5% and a 26% higher in a scenario with a false positive rate of 15%.

  10. A Comparative Study of Anomaly Detection Techniques for Smart City Wireless Sensor Networks

    Directory of Open Access Journals (Sweden)

    Victor Garcia-Font

    2016-06-01

    Full Text Available In many countries around the world, smart cities are becoming a reality. These cities contribute to improving citizens’ quality of life by providing services that are normally based on data extracted from wireless sensor networks (WSN and other elements of the Internet of Things. Additionally, public administration uses these smart city data to increase its efficiency, to reduce costs and to provide additional services. However, the information received at smart city data centers is not always accurate, because WSNs are sometimes prone to error and are exposed to physical and computer attacks. In this article, we use real data from the smart city of Barcelona to simulate WSNs and implement typical attacks. Then, we compare frequently used anomaly detection techniques to disclose these attacks. We evaluate the algorithms under different requirements on the available network status information. As a result of this study, we conclude that one-class Support Vector Machines is the most appropriate technique. We achieve a true positive rate at least 56% higher than the rates achieved with the other compared techniques in a scenario with a maximum false positive rate of 5% and a 26% higher in a scenario with a false positive rate of 15%.

  11. Comparative study on density gradients and swim-up preparation techniques utilizing neat and cryopreserved spermatozoa

    Institute of Scientific and Technical Information of China (English)

    Shyam S.R. Allamaneni; Ashok Agarwal; Sreedhar Rama; Pavithra Ranganathan; Rakesh K. Sharma

    2005-01-01

    Aim: To 1) compare post-wash and post-thaw parameters of sperm processed with PureSperm density gradient technique and swim-up method; and 2) test the efficacy of two commonly available density gradient media PureSperm and Isolate. Methods: This prospective study used semen specimens from 22 patients. Specimens from nine patients were processed by both PureSperm density gradient and swim-up method. These specimens were then cryopreserved.Thirteen specimens were processed by both PureSperm (40 % and 80 %) and Isolate (50 % and 90 %) double density gradient techniques. The two fractions processed by both PureSperm and swim-up were analyzed for post-wash sperm characteristics. Post-thaw analysis was done after 24 hours. Sperm fractions obtained after processing with PureSperm and Isolate were compared for post-wash sperm characteristics and ROS levels. Results: Specimens prepared with PureSperm had significantly higher median total motile sperm counts (TMSC) (32.2 × 106 vs.17.6 × 106), recovery rates (69.2 % vs. 50.0 %), and longevity at 4 hours (83.0 % vs. 55.0 %) compared to specimen prepared by swim-up. Post-thaw specimens also had a higher recovery and longevity at 4 hours with PureSperm as compared to the swim-up. Semen specimens processed by PureSperm had significantly higher total sperm count,TMSC, and percentage recovery rates (30.0 % vs. 19.7 %) than Isolate. Conclusion: Semen quality is better preserved in fresh and cryopreserved semen prepared with PureSperm density gradient compared to swim-up. A significant enrichment of sperm is observed with PureSperm compared to Isolate. Higher recovery rates of mature motile sperm obtained after PureSperm sperm preparation may be beneficial for successful ART.

  12. Gender identification of Grasshopper Sparrows comparing behavioral, morphological, and molecular techniques

    Science.gov (United States)

    Ammer, F.K.; Wood, P.B.; McPherson, R.J.

    2008-01-01

    Correct gender identification in monomorphic species is often difficult especially if males and females do not display obvious behavioral and breeding differences. We compared gender specific morphology and behavior with recently developed DNA techniques for gender identification in the monomorphic Grasshopper Sparrow (Ammodramus savannarum). Gender was ascertained with DNA in 213 individuals using the 2550F/2718R primer set and 3% agarose gel electrophoresis. Field observations using behavior and breeding characteristics to identify gender matched DNA analyses with 100% accuracy for adult males and females. Gender was identified with DNA for all captured juveniles that did not display gender specific traits or behaviors in the field. The molecular techniques used offered a high level of accuracy and may be useful in studies of dispersal mechanisms and winter assemblage composition in monomorphic species.

  13. Comparative Study on the Different Testing Techniques in Tree Classification for Detecting the Learning Motivation

    Science.gov (United States)

    Juliane, C.; Arman, A. A.; Sastramihardja, H. S.; Supriana, I.

    2017-03-01

    Having motivation to learn is a successful requirement in a learning process, and needs to be maintained properly. This study aims to measure learning motivation, especially in the process of electronic learning (e-learning). Here, data mining approach was chosen as a research method. For the testing process, the accuracy comparative study on the different testing techniques was conducted, involving Cross Validation and Percentage Split. The best accuracy was generated by J48 algorithm with a percentage split technique reaching at 92.19 %. This study provided an overview on how to detect the presence of learning motivation in the context of e-learning. It is expected to be good contribution for education, and to warn the teachers for whom they have to provide motivation.

  14. Robot Guidance Using Machine Vision Techniques in Industrial Environments: A Comparative Review

    Directory of Open Access Journals (Sweden)

    Luis Pérez

    2016-03-01

    Full Text Available In the factory of the future, most of the operations will be done by autonomous robots that need visual feedback to move around the working space avoiding obstacles, to work collaboratively with humans, to identify and locate the working parts, to complete the information provided by other sensors to improve their positioning accuracy, etc. Different vision techniques, such as photogrammetry, stereo vision, structured light, time of flight and laser triangulation, among others, are widely used for inspection and quality control processes in the industry and now for robot guidance. Choosing which type of vision system to use is highly dependent on the parts that need to be located or measured. Thus, in this paper a comparative review of different machine vision techniques for robot guidance is presented. This work analyzes accuracy, range and weight of the sensors, safety, processing time and environmental influences. Researchers and developers can take it as a background information for their future works.

  15. A Comparative Modelling Study of PWM Control Techniques for Multilevel Cascaded Inverter

    Directory of Open Access Journals (Sweden)

    A. TAHRI

    2005-01-01

    Full Text Available The emergence of multilevel converters has been in increase since the last decade. These new types of converters are suitable for high voltage and high power application due to their ability to synthesize waveforms with better harmonic spectrum. Numerous topologies have been introduced and widely studied for utility and drive applications. Amongst these topologies, the multilevel cascaded inverter was introduced in Static Var compensation and drive systems. This paper investigates several control techniques applied to the Multilevel Cascaded Inverter in order to ensure an efficient voltage utilization and better harmonic spectrum. A modelling and control strategy of a single phase Multilevel Cascaded Inverter is also investigated. Computer simulation results using Matlab program are reported and discussed together with a comparative study of the different control techniques of multilevel cascaded inverter.Moreover, experimental results are carried out on a scaled down prototype to prove the effectiveness of the proposed analysis.

  16. Comparing thermal stimulation techniques in infrared thermographic inspection of corrosion in steel

    Science.gov (United States)

    Chulkov, A. O.; Vavilov, V. P.

    2015-04-01

    Remote detection of corrosion in metals is a developing application area of active thermal nondestructive testing. In this study, emphasis is made on the optimization of heating techniques that is of a major interest in practical surveys. Some popular data processing techniques, such as Fourier transform, correlation and principal component analysis, are also quantitatively compared in application to corrosion detection in 1-2 mm thick steel by applying a criterion of signal-to-noise ratio. The best inspection results have been obtained by using powerful halogen lamps and air blowers. Material loss of about 25% with lateral dimensions greater than 10×10 mm can be reliably identified in practical tests. The use of Xenon flash tubes is inefficient because of significant steel thickness. LED panels have not provided expected results due to low absorption of LED quasi-monochromatic radiation.

  17. Robot Guidance Using Machine Vision Techniques in Industrial Environments: A Comparative Review

    Science.gov (United States)

    Pérez, Luis; Rodríguez, Íñigo; Rodríguez, Nuria; Usamentiaga, Rubén; García, Daniel F.

    2016-01-01

    In the factory of the future, most of the operations will be done by autonomous robots that need visual feedback to move around the working space avoiding obstacles, to work collaboratively with humans, to identify and locate the working parts, to complete the information provided by other sensors to improve their positioning accuracy, etc. Different vision techniques, such as photogrammetry, stereo vision, structured light, time of flight and laser triangulation, among others, are widely used for inspection and quality control processes in the industry and now for robot guidance. Choosing which type of vision system to use is highly dependent on the parts that need to be located or measured. Thus, in this paper a comparative review of different machine vision techniques for robot guidance is presented. This work analyzes accuracy, range and weight of the sensors, safety, processing time and environmental influences. Researchers and developers can take it as a background information for their future works. PMID:26959030

  18. Comparative study of random and oriented antibody immobilization techniques on the binding capacity of immunosensor.

    Science.gov (United States)

    Kausaite-Minkstimiene, A; Ramanaviciene, A; Kirlyte, J; Ramanavicius, A

    2010-08-01

    A comparative study of four different antibody immobilization techniques that are suitable for modification of surface plasmon resonance (SPR) chip (SPR-chip) is reported. Antibodies against human growth hormone (anti-HGH) were used as the model system. The evaluated SPR-chip modification techniques were (i) random immobilization of intact anti-HGH (intact-anti-HGH) via self-assembled monolayer (SAM) based on 11-mercaptoundecanoic acid (MUA); (ii) random immobilization of intact-anti-HGH within carboxymethyl dextran (CMD) hydrogel by direct covalent amine coupling technique; (iii) oriented coupling of intact-anti-HGH via Fc-fragment to protein-G layer assembled on SAM consisting of MUA (MUA/pG); (iv) oriented immobilization of fragmented anti-HGH antibodies (frag-anti-HGH) via their native thiol-groups directly coupled to the gold. To liberate these thiol groups, the intact-anti-HGH was chemically "divided" into two frag-anti-HGH fragments by chemical reduction with 2-mercaptoethylamine (2-MEA). Optimal concentration of 2-MEA for preparation of anti-HGH was 15 mM. The surface concentration of immobilized antibodies and the antigen binding capacity for all four differently modified SPR-chips was evaluated and compared. The maximum surface concentration of immobilized intact-anti-HGH was obtained by immobilizing the antibody within CMD-hydrogel. The maximal antigen binding capacity was obtained by SPR-chip based on intact-anti-HGH immobilized via MUA/pG. The immobilization based on application of frag-anti-HGH was found to be the most suitable for design of SPR-immunosensor for HGH detection, due to its sufficient antigen binding capacity, simplicity, and low cost in respect to the currently evaluated techniques.

  19. Comparative Analysis of PWM Techniques for Three Level Diode Clamped Voltage Source Inverter

    Directory of Open Access Journals (Sweden)

    Zulkifilie Bin Ibrahim

    2014-07-01

    Full Text Available Multilevel inverters are increasingly being used in high-power medium voltage industrial drive applications due to their superior performance compared to conventional two-level inverters. Thre are a number of Pulse width modulation (PWM techniques applied in recent years. The most widely applied PWM techniques are Sine Pulse Width Modulation (SPWM and Space Vector Pulse Width Modulation (SVPWM.  SPWM is the most simple modulation technique that can realize easily in analog circuit.  However, it has some drawbacks such as higher total harmonic distortion (THD, lower effective DC utilization and lower switching frequency. Space vector pulse width modulation (SVPWM is widely used because of their easier digital realization and better DC bus utilization and lower THD. The complexity is due to the difficulty in determining the reference vector location, on times calculation, and switching states selection. This paper presents a simple SVPWM algorithm for diode clamped three level inverters based on standard two-level SVPWM which can easily determine the location of reference vector, calculate the on-times, the selection of switching states. Three level diode clamped inverter (3LDCI using space vector modulation technique has been modeled and simulated using MATLAB/SIMULINK and Origin 6.1 with a passive R-L load that can be extended to any level. Simulation results are presented to verify the proposed SVPWM control in terms of THD. The results are compared with conventional sinusoidal pulse width modulation (SPWM where SVPWM shows better performance than SPWM in terms of THD.

  20. Comparing Kinematic Characteristics of Two Snatch and Push Techniques in Male Weightlifters

    Directory of Open Access Journals (Sweden)

    Seyed Ehsan Jahed

    2016-12-01

    Full Text Available This study is aimed to compare Kinematic characteristics of two snatch and push techniques. 16 male weightlifters of Markazi Province (in the age of years old, in weights of kg participated in this study and runthe considered technique was filmed with frequency rate of 240 FPS. Weightlifters divided in two 8- person groups_snatch group and push groups_ and with 80% power run the technique 3 times. Data related to kinematic parameters of lower limb in two push and snatch techniques were analyzed by using from statistical methodof paired sample t- test. In 1st phase, the minimum flexion of knee in push method is significantly more that snatch one. In 2nd phase, kinetic skirt of hip and knee joints and angular acceleration of knee extension and the maximum dorsiflexion of ankle in push method were significantly more than snatch one and linear kinematic parameters of hip and leg in push method in all parameters except vertical acceleration of hip and vertical acceleration of leg were significantly more than these amounts in snatch one. In 3rd phase, maximum dorsiflexion of ankle, kinetic skirt of ankle and angular acceleration of dorsiflexion of ankle in push method were significantly more than snatch one and the amount of vertical movement of hip and vertical movement of leg in push method were more than snatch one. Weightlifters in push method used further from angular movements' acceleration and kinetic skirt of joints and also from linear movements' acceleration in lower limbs. So, push technique can cause to make some efforts and exercising further acceleration than snatch one in runninglifting motion of weightlifters.