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Sample records for hybrid langmuir probe

  1. Advanced Langmuir Probe (LP)

    Science.gov (United States)

    Voronka, N. R.; Block, B. P.; Carignan, G. R.

    1991-01-01

    The dynamic response of the MK-2 version of the Langmuir probe amplifier was studied. The settling time of the step response is increased by: (1) stray node-to-ground capacitance at series connections between high value feedback resistors; and (2) input capacitance due to the input cable, FET switches, and input source follower. The stray node-to-ground capacitances can be reduced to tolerable levels by elevating the string of feedback resistors above the printing board. A new feedback network was considered, with promising results. The design uses resistances having much lower nominal values, thereby minimizing the effect of stray capacitances. Faster settling times can be achieved by using an operational amplifier having a higher gain-bandwidth product.

  2. Langmuir probe analysis in electronegative plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Bredin, Jerome, E-mail: jerome.bredin@lpp.polytechnique.fr; Chabert, Pascal; Aanesland, Ane [Laboratoire de Physique des Plasmas, CNRS, Sorbonne Universités, UPMC Univ Paris 06, Univ Paris-Sud, Ecole Polytechnique, 91128 Palaiseau (France)

    2014-12-15

    This paper compares two methods to analyze Langmuir probe data obtained in electronegative plasmas. The techniques are developed to allow investigations in plasmas, where the electronegativity α{sub 0} = n{sub –}/n{sub e} (the ratio between the negative ion and electron densities) varies strongly. The first technique uses an analytical model to express the Langmuir probe current-voltage (I-V) characteristic and its second derivative as a function of the electron and ion densities (n{sub e}, n{sub +}, n{sub –}), temperatures (T{sub e}, T{sub +}, T{sub –}), and masses (m{sub e}, m{sub +}, m{sub –}). The analytical curves are fitted to the experimental data by adjusting these variables and parameters. To reduce the number of fitted parameters, the ion masses are assumed constant within the source volume, and quasi-neutrality is assumed everywhere. In this theory, Maxwellian distributions are assumed for all charged species. We show that this data analysis can predict the various plasma parameters within 5–10%, including the ion temperatures when α{sub 0} > 100. However, the method is tedious, time consuming, and requires a precise measurement of the energy distribution function. A second technique is therefore developed for easier access to the electron and ion densities, but does not give access to the ion temperatures. Here, only the measured I-V characteristic is needed. The electron density, temperature, and ion saturation current for positive ions are determined by classical probe techniques. The electronegativity α{sub 0} and the ion densities are deduced via an iterative method since these variables are coupled via the modified Bohm velocity. For both techniques, a Child-Law sheath model for cylindrical probes has been developed and is presented to emphasize the importance of this model for small cylindrical Langmuir probes.

  3. Langmuir probe in collisionless and collisional plasma including dusty plasma

    Science.gov (United States)

    Bose, Sayak; Kaur, Manjit; Chattopadhyay, P. K.; Ghosh, J.; Saxena, Y. C.; Pal, R.

    2017-04-01

    Measurements of local plasma parameters in dusty plasma are crucial for understanding the physics issues related to such systems. The Langmuir probe, a small electrode immersed in the plasma, provides such measurements. However, designing of a Langmuir probe system in a dusty plasma environment demands special consideration. First, the probe has to be miniaturized enough so that its perturbation on the ambient dust structure is minimal. At the same time, the probe dimensions must be such that a well-defined theory exists for interpretation of its characteristics. The associated instrumentation must also support the measurement of current collected by the probe with high signal to noise ratio. The most important consideration, of course, comes from the fact that the probes are prone to dust contamination, as the dust particles tend to stick to the probe surface and alter the current collecting area in unpredictable ways. This article describes the design and operation of a Langmuir probe system that resolves these challenging issues in dusty plasma. In doing so, first, different theories that are used to interpret the probe characteristics in collisionless as well as in collisional regimes are discussed, with special emphasis on application. The critical issues associated with the current-voltage characteristics of Langmuir probe obtained in different operating regimes are discussed. Then, an algorithm for processing these characteristics efficiently in presence of ion-neutral collisions in the probe sheath is presented.

  4. Fast Diagnosis of Transient Plasma by Langmuir Probe

    Institute of Scientific and Technical Information of China (English)

    TANG En-ling; ZHANG Qing-ming; OUYANG Ji-ting

    2007-01-01

    A method for the fast measurement of electron temperature and density with temporal resolution in transient plasma has been implemented by Langmuir probe. The diagnostic system consists of a single Langmuir probe driven by a high frequency sinusoidal voltage. The current and voltage spectrum on the probe were detected synchronously by an oscilloscope with sampling rate being at least 5 times higher than the frequency of sweep voltage. The system has been used to diagnose the transient plasma generated by hypervelocity-impact of LY12 aluminum projectile into LY12 aluminum target.

  5. Study of a Laser-Produced Plasma by Langmuir Probes

    DEFF Research Database (Denmark)

    Chang, C. T.; Hasimi, M.; Pant, H. C.

    1977-01-01

    The structure, the parameters and the expansion of the plasma produced by focusing a 7 J, 20 ns Nd-glass laser on stainless-steel and glass targets suspended in a high-vacuum chamber were investigated by Langmuir probes. It was observed that the probe signals consisted of a photoelectric...

  6. The theory of Langmuir probes in strong electrostatic potential structures

    Science.gov (United States)

    Borovsky, J. E.

    1986-01-01

    The operation of collecting and emitting Langmuir probes and double probes within time-stationary strong electrostatic potential structures is analyzed. The cross sections of spherical and cylindrical probes to charged particles within the structures are presented and used to obtain the current-voltage characteristics of idealized probes. The acquisition of plasma parameters from these characteristics is outlined, and the operation of idealized floating double-probe systems is analyzed. Probe surface effects are added to the idealized theory, and some surface effects pertinent to spacecraft probes are quantified. Magnetic field effects on idealized probes are examined, and the time required for floating probes to change their potentials by collecting charge and by emitting photoelectrons is discussed. Calculations on the space-charge effects of probe-perturbed beams and on the space-charge limiting of electron emission are given in an appendix.

  7. An investigation of dust particles orbiting a Langmuir probe

    Energy Technology Data Exchange (ETDEWEB)

    Ramazanov, T S; Kodanova, S K; Dzhumagulova, K N; Dosbolayev, M K; Jumabekov, A N [IETP, Al Farabi Kazakh National University, Tole Bi 96a, 050012 Almaty (Kazakhstan); Petrov, O F; Antipov, S N [Joint Institute for High Temperatures of RAS, 13-2, Izhorskaya St, Moscow 125412 (Russian Federation)

    2009-05-29

    In the present work, the behavior of dust particles near an attracting Langmuir cylindrical probe in glow discharge plasma was investigated experimentally. Trajectories of dust particles for different initial kinetic energies and impact parameters were analyzed numerically. The comparision between experimental and simulation results are made. The results obtained can be used for the development of new dusty plasma diagnostic techniques.

  8. Langmuir-Probe Measurements in Flowing-Afterglow Plasmas

    Science.gov (United States)

    Johnsen, R.; Shunko, E. V.; Gougousi, T.; Golde, M. F.

    1994-01-01

    The validity of the orbital-motion theory for cylindrical Langmuir probes immersed in flowing- afterglow plasmas is investigated experimentally. It is found that the probe currents scale linearly with probe area only for electron-collecting but not for ion-collecting probes. In general, no agreement is found between the ion and electron densities derived from the probe currents. Measurements in recombining plasmas support the conclusion that only the electron densities derived from probe measurements can be trusted to be of acceptable accuracy. This paper also includes a brief derivation of the orbital-motion theory, a discussion of perturbations of the plasma by the probe current, and the interpretation of plasma velocities obtained from probe measurements.

  9. Designs of Langmuir probes for W7-X

    Energy Technology Data Exchange (ETDEWEB)

    Laube, Ralph, E-mail: ralph.laube@ipp.mpg.de [Max-Planck-Institut fuer Plasmaphysik, EURATOM Association, Teilinstitut Greifswald, Wendelsteinstr. 1, D-17491 Greifswald (Germany); Laux, Michael; Ye, Min You [Max-Planck-Institut fuer Plasmaphysik, EURATOM Association, Teilinstitut Greifswald, Wendelsteinstr. 1, D-17491 Greifswald (Germany); Greuner, Henri; Lindig, Stefan [Max-Planck-Institut fuer Plasmaphysik, EURATOM Association, Boltzmannstr. 2, D-85748 Garching (Germany)

    2011-10-15

    Several designs of Langmuir probes for the stellarator Wendelstein 7-X (W7-X) are described. Different types of probes are proposed for the different divertors to be used during different operational phases of W7-X. Comb-like arrays of stiff probes, arrays of flexible probes, and fixed inlay probes are reviewed. For the initial phase of W7-X it was decided to install arrays of fixed inlay probes. Two mockups were manufactured and one of them was tested with success in the high heat flux test facility GLADIS. For long-pulse operation of W7-X different conceptual designs are proposed and are still developed further. This paper summarizes the different design constrains for the Langmuir probes in the different divertor surroundings, describes the design of the array of inlay probes for the initial phase and the result of the GLADIS test, and gives a preview of the conceptual designs of probes for the long-pulse operational phase of W7-X.

  10. Langmuir and Langmuir-Blodgett films of hybrid amphiphiles with a polyoxometalate headgroup.

    Science.gov (United States)

    Wang, Xiao-Le; Wang, Yong-Liang; Miao, Wen-Ke; Hu, Min-Biao; Tang, Jing; Yu, Wei; Hou, Zhan-Yao; Zheng, Ping; Wang, Wei

    2013-06-04

    A hybrid was at first synthesized by a postfunctionalization of an aminomethane trisalkoxo-functionalized Anderson-type polyoxometalate (POM) encapsulated by three tetrabutylammonium ions using a 3,5-bis(tetradecyloxy)benzoic acid by amidation. Then the three TBA(+) counter cations were programmatically replaced by protons (H(+)) following a molecule-to-amphiphile conversion. In this way one hybrid and three POM-containing hybrid amphiphiles (PCHAs) were acquired by adjusting the number (n) of TBA(+) ions and number (3 - n) of H(+) ions (n = 3, 2, 1, and 0). These compounds can be spread onto a water surface to form a Langmuir monolayer film at the air-water interface. Surface pressure-molecular area measurements exhibit the TBA(+) (H(+)) number playing an important role in the forming ability and stability of Langmuir monolayer films. Also, the Langmuir-Blodgett (LB) technique has been used to transfer the monolayer film onto solid supports to fabricate solid multilayer films. It was found that the PCHA with three H(+) ions had the best Langmuir film-forming ability and thus formed stable LB films with a two-dimensional ordered structure. Our findings are instructive in fabricating and using solid films of the amphiphiles with POM headgroups.

  11. Solar extreme ultraviolet sensor and advanced langmuir probe

    Science.gov (United States)

    Voronka, N. R.; Block, B. P.; Carignan, G. R.

    1992-01-01

    For more than two decades, the staff of the Space Physics Research Laboratory (SPRL) has collaborated with the Goddard Space Flight Center (GSFC) in the design and implementation of Langmuir probes (LP). This program of probe development under the direction of Larry Brace of GSFC has evolved methodically with innovations to: improve measurement precision, increase the speed of measurement, and reduce the weight, size, power consumption and data rate of the instrument. Under contract NAG5-419 these improvements were implemented and are what characterize the Advanced Langmuir Probe (ALP). Using data from the Langmuir Probe on the Pioneer Venus Orbiter, Brace and Walter Hoegy of GSFC demonstrated a novel method of monitoring the solar extreme ultraviolet (EUV) flux. This led to the idea of developing a sensor similar to a Langmuir probe specifically designed to measure solar EUV (SEUV) that uses a similar electronics package. Under this contract, a combined instrument package of the ALP and SEUV sensor was to be designed, constructed, and laboratory tested. Finally the instrument was to be flight tested as part of sounding rocket experiment to acquire the necessary data to validate this method for possible use in future earth and planetary aeronomy missions. The primary purpose of this contract was to develop the electronics hardware and software for this instrument, since the actual sensors were suppied by GSFC. Due to budget constraints, only a flight model was constructed. These electronics were tested and calibrated in the laboratory, and then the instrument was integrated into the rocket payload at Wallops Flight Facility where it underwent environmental testing. After instrument recalibration at SPRL, the payload was reintegrated and launched from the Poker Flat Research Range near Fairbanks Alaska. The payload was successfully recovered and after refurbishment underwent further testing and developing to improve its performance for future use.

  12. Langmuir probe study of plasma expansion in pulsed laser ablation

    DEFF Research Database (Denmark)

    Hansen, T.N.; Schou, Jørgen; Lunney, J.G.

    1999-01-01

    Langmuir probes were used to monitor the asymptotic expansion of the plasma produced by the laser ablation of a silver target in a vacuum. The measured angular and temporal distributions of the ion flux and electron temperature were found to be in good agreement with the self-similar isentropic...... and adiabatic solution of the gas dynamics equations describing the expansion. The value of the adiabatic index gamma was about 1.25, consistent with the ablation plume being a low temperature plasma....

  13. Test of a new tip material for Langmuir probe diagnostic

    Science.gov (United States)

    Naz, M. Y.; Shukrullah, S.; Ghaffar, A.; Rehman, N. U.; Khan, Y.

    2016-03-01

    The objective of the work is to test a nickel-chrome alloy as a probe tip material for characterization of discharge plasmas. In order to meet the objective, a symmetric triple Langmuir probe diagnostic system and an associated driving circuit are designed and tested in an inductively coupled plasma generated by a 13.56-MHz radio frequency source coupled with an automated impedance match network. This probe is used to measure the electron temperature, electron number density, and ion saturation current as functions of the input power of the radio frequency source and the filling gas pressure. An increasing trend is noticed in the electron temperature and electron number density with an increase in the input power, whilst a decreasing trend is evident in these parameters with an increase in the nitrogen gas pressure. The overall inaccuracies in electron temperature and electron number density measurements are 5-12% and 3-13%, respectively.

  14. A dual-cable noise reduction method for Langmuir probes

    Science.gov (United States)

    Yang, T. F.; Zu, Q. X.; Liu, Ping

    1995-07-01

    To obtain fast time response plasma properties, electron density and electron temperature, with a Langmuir probe, the applied probe voltage has to be swept at high frequency. Due to the RC characteristics of coaxial cables, an induced noise of a square-wave form will appear when a sawtooth voltage is applied to the probe. Such a noise is very annoying and difficult to remove, particularly when the probe signal is weak. This paper discusses a noise reduction method using a dual-cable circuit. One of the cables is active and the other is a dummy. Both of them are of equal length and are laid parallel to each other. The active cable carries the applied probe voltage and the probe current signal. The dummy one is not connected to the probe. After being carefully tuned, the induced noises from both cables are nearly identical and therefore can be effectively eliminated with the use of a differential amplifier. A clean I-V characteristic curve can thus be obtained. This greatly improves the accuracy and the time resolution of the values of ne and Te.

  15. Utilization of Double Langmuir Probes on Proto-MPEX

    Science.gov (United States)

    Kafle, Nischal; Caughman, John B.; Caneses, Juan F. M.; Goulding, Richard H.; Martin, Elijah. H.; Donovan, David. C.

    2016-10-01

    Langmuir probes (LP) are a robust, simply constructed, and inexpensive diagnostic tool. They are routinely used to measure the electron temperature and density in plasmas. However, the uncompensated single-tip LP has demonstrated limitations in time fluctuating plasma potential. The measurement quality can be improved by implementing compensation or by using a double-tipped probe. Double Langmuir probes (DLPs) are referenced against each other instead of the device vessel and therefore are less susceptible to fluctuations in RF plasmas. DLPs are being used to measure plasma parameters at multiple locations in the Proto-MPEX experiment at Oak Ridge National Laboratory. Proto-MPEX is a linear plasma device that combines a helicon plasma source with additional microwave and radio frequency heating to deliver a high plasma heat flux at a target. An electron temperature of 3-6 eV and density of 3e19 - >5e19 m-3 has been measured near the target in Proto-MPEX for different magnetic field configurations, with peak magnetic fields >1 T. Plasma density and temperature tend to be higher closer to the plasma source and are strongly dependent on operating pressure. This presentation will give an overview of DLP and will provide results from multiple locations and for different operating conditions. This work was supported by the U.S. D.O.E. contract DE-AC05-00OR22725.

  16. RF-Compensated Langmuir Probe Measurements in an IPVD System

    Science.gov (United States)

    Juliano, Daniel R.; Ruzic, David N.

    1998-10-01

    The experimental apparatus consists of a commercial-scale magnetron with an RF coil between the target and substrate holder. This coil creates a secondary inductive plasma that ionizes a significant portion of the sputter flux en route from target to substrate. In order to understand and predict the ionization of the sputter flux arriving at the substrate, Langmuir probe measurements of this secondary inductive plasma were made under various combinations of powers (magnetron and RF), pressures, and working gas mixtures. The probe apparatus is RF-compensated in order to keep the voltage difference between the probe tip and plasma constant throughout the RF cycle. In order to yield accurate measurements in the dirty depositing environment of the IPVD system, the back of probe tip is recessed in a small ceramic tube, preventing shorting. Further, the potential on the probe tip is kept low except during the data-collecting voltage sweeps in order to continuously clean it and maintain stable electrical characterisitics.

  17. Revisiting plasma hysteresis with an electronically compensated Langmuir probe

    Science.gov (United States)

    Srivastava, P. K.; Singh, S. K.; Awasthi, L. M.; Mattoo, S. K.

    2012-09-01

    The measurement of electron temperature in plasma by Langmuir probes, using ramped bias voltage, is seriously affected by the capacitive current of capacitance of the cable between the probe tip and data acquisition system. In earlier works a dummy cable was used to balance the capacitive currents. Under these conditions, the measured capacitive current was kept less than a few mA. Such probes are suitable for measurements in plasma where measured ion saturation current is of the order of hundreds of mA. This paper reports that controlled balancing of capacitive current can be minimized to less than 20 μA, allowing plasma measurements to be done with ion saturation current of the order of hundreds of μA. The electron temperature measurement made by using probe compensation technique becomes independent of sweep frequency. A correction of ≤45% is observed in measured electron temperature values when compared with uncompensated probe. This also enhances accuracy in the measurement of fluctuation in electron temperature as δTpk-pk changes by ˜30%. The developed technique with swept rate ≤100 kHz is found accurate enough to measure both the electron temperature and its fluctuating counterpart. This shows its usefulness in measuring accurately the temperature fluctuations because of electron temperature gradient in large volume plasma device plasma with frequency ordering ≤50 kHz.

  18. Langmuir Probe Spacecraft Potential End Item Specification Document

    Science.gov (United States)

    Gilchrist, Brian; Curtis, Leslie (Technical Monitor)

    2001-01-01

    This document describes the Langmuir Probe Spacecraft Potential (LPSP) investigation of the plasma environment in the vicinity of the ProSEDS Delta II spacecraft. This investigation will employ a group of three (3) Langmuir Probe Assemblies, LPAs, mounted on the Delta II second stage to measure the electron density and temperature (n(sub e) and T(sub e)), the ion density (n(sub i)), and the spacecraft potential (V(sub s)) relative to the surrounding ionospheric plasma. This document is also intended to define the technical requirements and flight-vehicle installation interfaces for the design, development, assembly, testing, qualification, and operation of the LPSP subsystem for the Propulsive Small Expendable Deployer System (ProSEDS) and its associated Ground Support Equipment (GSE). This document also defines the interfaces between the LPSP instrument and the ProSEDS Delta II spacecraft, as well as the design, fabrication, operation, and other requirements established to meet the mission objectives. The LPSP is the primary measurement instrument designed to characterize the background plasma environment and is a supporting instrument for measuring spacecraft potential of the Delta II vehicle used for the ProSEDS mission. Specifically, the LPSP will use the three LPAs equally spaced around the Delta II body to make measurements of the ambient ionospheric plasma during passive operations to aid in validating existing models of electrodynamic-tether propulsion. These same probes will also be used to measure Delta II spacecraft potential when active operations occur. When the electron emitting plasma contractor is on, dense neutral plasma is emitted. Effective operation of the plasma contactor (PC) will mean a low potential difference between the Delta II second stage and the surrounding plasma and represents one of the voltage parameters needed to fully characterize the electrodynamic-tether closed circuit. Given that the LP already needs to be well away from any

  19. The accuracy of determining ion parameters by means of a cylindrical Langmuir probe

    Science.gov (United States)

    Georgieva, K. Ia.; Kirov, B. B.; Kraleva, L. Kh.

    A method is presented whereby a cylindrical Langmuir probe can be used to obtain an estimate of the concentration distribution of two prevalent kinds of ions in space plasmas when their masses are known. In many cases, the use of a Langmuir probe can thus compensate for the absence of a mass spectrometer. The probe can also be used as a backup if the data obtained by other instruments are not dependable.

  20. Langmuir Probe Distortions and Probe Compensation in an Inductively Coupled Plasma

    Science.gov (United States)

    Ji, J. S.; Cappelli, M. A.; Kim, J. S.; Rao, M. V. V. S.; Sharma, S. P.

    1999-01-01

    In many RF discharges, Langmuir probe measurements are usually made against a background of sinusoidal (and not so sinusoidal) fluctuations in the plasma parameters such as the plasma potential (Vp), the electron number density (ne), and the electron temperature (Te). The compensation of sinusoidal fluctuations in Vp has been extensively studied and is relatively well understood. Less attention has been paid to the possible distortions introduced by small fluctuations in plasma density and/or plasma temperature, which may arise in the sheath and pre-sheath regions of RF discharges. Here, we present the results of a model simulation of probe characteristics subject to fluctuations in both Vp and ne. The modeling of probe distortion due to possible fluctuations in Te is less straightforward. A comparison is presented of calculations with experimental measurements using a compensated and uncompensated Langmuir probe in an inductively coupled GEC reference cell plasma, operating on Ar and Ar/CF4 mixtures. The plasma parameters determined from the compensated probe characteristics are compared to previous measurements of others made in similar discharges, and to our own measurements of the average electron density derived from electrical impedance measurements.

  1. Means to remove electrode contamination effect of Langmuir probe measurement in space

    Energy Technology Data Exchange (ETDEWEB)

    Oyama, K.-I.; Lee, C. H.; Fang, H. K.; Cheng, C. Z. [Plasma and Space Science Center, National Cheng Kung University, No.1 Ta-Hsueh Rd., Tainan 70101, Taiwan (China)

    2012-05-15

    Precaution to remove the serious effect of electrode contamination in Langmuir probe experiments has not been taken in many space measurements because the effect is either not understood or ignored. We stress here that one should pay extra attention to the electrode contamination effect to get accurate and reliable plasma measurements so that the long time effort for sounding rocket/satellite missions does not end in vain or becomes less fruitful. In this paper, we describe two main features of voltage-current characteristic curves associated with the contaminated Langmuir probe, which are predicted from the equivalent circuit model, which we proposed in 1970's. We then show that fast sweeping dc Langmuir probes can give reliable results in the steady state regime. The fast sweeping probe can also give reliable results in transient situations such as satellite moves through plasma bubble in the ionosphere where the electron density drastically changes. This fact was first confirmed in our laboratory experiment.

  2. Langmuir probe Diagnostic for local parameter measurement in Magnetized Plasma using LabVIEW

    Directory of Open Access Journals (Sweden)

    Bijal Vara

    2014-03-01

    Full Text Available In recent years, plasma technology is used by Semiconductor, thin film industries for deposit layers, etching process and surface modification. So it is necessary to understanding internal plasma parameter. Langmuir probe is one of the simplest techniques which is used to measure wide range of plasma parameter like plasma potential, floating potential, electron temperature, electron energy distribution function (EEDF etc. Langmuir current voltage characteristic is obtained by varying bias voltage of the probe. LabVIEW is most powerful Microsoft window compatible software which is used to immediate data acquisition and analysis. In this paper describes analysis of Langmuir data using LabVIEW software which automatically measure I-V Plasma probe Characteristics and obtain EEDF of plasma.

  3. Combined Impedance Probe and Langmuir Probe Studies of the Low-Latitude E Region

    Science.gov (United States)

    Rowland, D. E.; Pfaff, R. F.; Steigies, C. T.

    2008-01-01

    The EQUIS-2 sounding rocket and radar campaign, launched from Kwajalein Atoll in 2004, included a mission to study low-latitude irregularities and electrodynamics, led by NASA GSFC. This mission included two instrumented rockets launched into the nighttime E region (apogee near 120 km), which included comprehensive electrodynamics and neutral density instrumentation. These rockets carried the first of a new generation of impedance probes, that utilize a wide-band drive signal to simultaneously measure the impedance of an antenna in a plasma as a function of frequency from 7 kEIz to 4 MHz. at a rapid cadence. This technique promises to permit true plasma spectroscopy, and resulted in the identification of multiple plasma resonances and accurate measurements of the plasma density, even in the low density nighttime E region. We present analyses of the technique and resulting spectra, and show how these data may be combined with fixed-bias Langmuir Probe data to infer the temperature structure of the E region as well as providing accurate absolute calibrations for the very high time resolution fixed-bias probe data. The data is shown to agree well with data from ionosonde, the ALTAIR radar, and the Peruvian beacon experiment.

  4. Magnetic and Langmuir Probe Measurements on the Plasmoid Thruster Experiment (PTX)

    Science.gov (United States)

    Koelfgen, Syri J.; Eskridge, Richard; Lee, Michael H.; Martin, Adam; Hawk, Clark W.; Fimognan, Peter

    2004-01-01

    The Plasmoid Thruster Experiment (PTX) operates by inductively producing plasmoids in a conical theta-pinch coil and ejecting them at high velocity. A plasmoid is a plasma with an imbedded closed magnetic field structure. The shape and magnetic field structure of the translating plasmoids have been measured with of an array of magnetic field probes. Six sets of two B-dot probes were constructed for measuring B(sub z) and B(sub theta), the axial and azimuthal components of the magnetic field. The probes are wound on a square G10 form, and have an average (calibrated) NA of 9.37 x l0(exp -5) square meters, where N is the number of turns and A is the cross-sectional area. The probes were calibrated with a Helmholtz coil, driven by a high-voltage pulser to measure NA, and by a signal generator to determine the probe's frequency response. The plasmoid electron number density n(sub e) electron temperature T(sub e), and velocity ratio v/c(sub m), (where v is the bulk plasma flow velocity and c(sub m), is the ion thermal speed) have also been measured with a quadruple Langmuir probe. The Langmuir probe tips are 10 mm long, 20-mil diameter stainless steel wire, housed in a 6-inch long 4-bore aluminum rod. Measurements on PTX with argon and hydrogen from the magnetic field probes and quadruple Langmuir probe will be presented in this paper.

  5. Langmuir Probe Measurements in an Inductively Coupled GEC Reference Cell Plasma

    Science.gov (United States)

    Ji, J. S.; Kim, J. S.; Cappelli, M. A.; Sharma, S. P.; Arnold, J. O. (Technical Monitor)

    1998-01-01

    Measurements of electron number density, electron temperature, and electron energy distribution function (EEDF) using a compensated Langmuir probe have been performed on an inductively (transformer ) coupled Gaseous Electronics Conference (GEC) reference cell plasma. The plasma source is operated with CH4, CF4, or their mixtures with argon. The effect of independently driving the electrode supporting the wafer on the probe data is studied. In particular, we find that the plasma structure depends on the phase in addition to the magnitude of the power coupled to the electrode relative to that of the transformer coil. The Langmuir probe is translated in a plane parallel to the electrode to investigate the spatial structure of the plasma. The probe data is also compared with fluid model predictions.

  6. LabVIEW software for analyzing Langmuir probe characteristics in magnetized plasma

    Science.gov (United States)

    Gandhi, S.; Binwal, S.; Kabariya, H.; Karkari, S. K.

    2016-03-01

    This paper describes the methodology for processing Ampere-Volts (I-V) characteristics of the Langmuir probe in magnetized plasma using graphical programming language based on LabVIEW. Computing the plasma parameters from I-V characteristic involves several steps that include signal processing, interpolation, linear and non-linear curve fitting based on physical models, finding the derivatives of the experimental curve and determining the zero-crossing of the probe current as a function of the applied voltage. These operations are practically tedious to perform manually causing systematic errors in output parameters. To overcome this challenge, software is developed to analyze the planar Langmuir probe characteristics in magnetized plasma. The software allows simultaneous display of different plasma parameters that helps to verify the consistency of the analyzed plasma parameters with the standard probe theory. Using this software, plasma parameters are obtained in a linear plasma device and its characteristics are discussed.

  7. Radicals as EPR probes of magnetization of gadolinium stearate Langmuir-Blodgett film

    DEFF Research Database (Denmark)

    Koksharov, Y.A.; Bykov, I.V.; Malakho, A.P.;

    2002-01-01

    In the present work we have applied the method of the EPR spin probes which allows performing simultaneously EPR and magnetization measurements to the investigation of magnetism of the Cid stearate Langmuir-Blodgett (LB) films. For this purpose we have prepared and studied by the EPR technique...

  8. Langmuir probe studies on a RF ion source for NBI

    Energy Technology Data Exchange (ETDEWEB)

    McNeely, P. E-mail: p.mcneely@ipp.mpg.de; Heineman, B.; Kraus, W.; Riedl, R.; Speth, E.; Vollmer, O

    2001-10-01

    IPP Garching has been developing a RF ion source for H{sup -} production. In order to improve the data quality a new scanning probe system with passive RF compensation has been installed on the Type VI ion source on the BATMAN test stand. Using this probe, measurements have been carried out to study changes to the plasma parameters (electron density, electron temperature, and plasma potential) due to variation in the source operating conditions. The data were collected at a source pressure of 0.5 Pa and with 60{+-}5 kW applied RF power. Presented are some of the results of these measurements, focusing on the effect of: argon seeding, addition of Cs to the source, and the newly added Faraday screen. The electron density behaves in a fashion that agrees with the theory of ambipolar diffusion. Typically there is little change to the average electron energy observed regardless of which effect is considered. The plasma potential shows the most significant changes with external source conditions, both in value for all cases and shape when the Faraday screen was added.

  9. Radial Density Profile in the SSX Plasma Wind Tunnel using a Double Langmuir Probe

    Science.gov (United States)

    Weinhold, D. L.; Flanagan, K.; Gray, T.; Brown, M. R.

    2011-10-01

    We present preliminary results from a moveable double Langmuir probe in the present plasma wind tunnel configuration of SSX. The probe is designed to measure radial profiles of electron density (ne) and electron temperature (Te) across the midplane with a 1 cm resolution. Line-averaged densities from He-Ne interferometry show densities of 1 - 5 ×1015 cm-3 . In addition to mean values, we will also present electrostatic fluctuations and correlations with magnetic field measurements. The double Langmuir probe also measures local Te. Line-averaged measurements from VUV spectroscopy indicate Te ~ 10 eV . The Langmuir probe stalk diameter measures 6 . 5 mm and tip spacing is 1 . 1 mm . The SSX plasma wind tunnel has dimensions L ≅ 1 m and R = 0 . 08 m . Plasma flow speeds are v >= 50 km / s . The cylindrical copper boundary and probe surfaces are baked and cleaned in a He glow discharge to maintain excellent vacuum and surface conditions. Electrostatic measurements during merging will be presented if available. Work supported by US DOE and CMSO.

  10. On the issue of the surface contamination of a Langmuir Probe sensor: Demeter ISL results

    Science.gov (United States)

    Lebreton, J. P.

    2011-10-01

    The Demeter Instrument Sonde de Langmuir (ISL) comprises two Langmuir Probe sensors. It includes a classical cylindrical sensor and a 6-sector spherical Segmented Langmuir Probe (SLP) sensor. The CNES Demeter satellite was launched in June 2004 on a 700-km altitude high-inclination orbit. ISL worked flawlessly till the satellite was decommissioned in March 2011. It provided more than 6 years of data. For operational reasons, the science payload was only operated below magnetic latitude 65°. It was switched off twice per orbit when above 65°. A transient behavior of the ISL sensors was systematically observed each time it was turned on at the beginning of each half-orbit segment. This transient behavior is attributed to surface contamination of the sensors. Some surface contamination of the sensor is indeed inferred from the recording of a series of I-V curves at different sweep rates using a special mode designed to monitor the evolution of the surface state of the sensor during the mission. As independently observed from the comparison between Demeter ISL measurements and Ground-based radar ionospheric sounding measurements, (J.-L. Berthelier, private communication, 2011) it is shown that the electron temperature measurements performed by a contaminated Langmuir Probe are significantly higher than the true physical value. Based on the work of Piel at al., a method was developed to determine the electrical characteristics of the surface contamination layer, and to remove the effect of the contamination layer on the determination of the main plasma parameters from the analysis of the I-V curve (the plasma electron density Ne and the Electron temperature Ne). Potential contamination issues for Langmuir Probes on future planetary mission orbiters will be addressed and ways to avoid or at least mitigate the effects of will be discussed.

  11. Ion collection by planar Langmuir probes: Sheridan's model and its verification

    Science.gov (United States)

    Lee, Dongsoo; Hershkowitz, Noah

    2007-03-01

    Data analysis from planar Langmuir probes normally assumes that the sheath effects are not significant in determining electron density and temperature when the Debye length is small compared to the probe radius. However, analysis of ion saturation current requires careful attention due to sheath expansion near the probe electrode. It is experimentally verified for the first time that Sheridan's numerical model [T. E. Sheridan, Phys. Plasmas 7, 3084 (2000)] provides a correct method to measure the ion saturation current for which the ion density agrees with the electron density in argon plasmas.

  12. On the interpretation of Langmuir probe data inside a spacecraft sheath

    Energy Technology Data Exchange (ETDEWEB)

    Olson, J.; Brenning, N. [Space and Plasma Physics, Royal Institute of Technology (KTH), Teknikringen 31, SE-10044 Stockholm (Sweden); Wahlund, J.-E. [Swedish Institute of Space Physics, Box 537, SE-751 21 Uppsala (Sweden); Gunell, H. [Belgian Institute for Space Aeronomy, Avenue Circulaire 3, B-1180 Brussels (Belgium)

    2010-10-15

    If a Langmuir probe is located inside the sheath of a negatively charged spacecraft, there is a risk that the probe characteristic is modified compared to that of a free probe in the ambient plasma. We have studied this probe-in-spacecraft-sheath problem in the parameter range of a small Langmuir probe (with radius r{sub LP}<<{lambda}{sub D}) using a modified version of the orbit motion limited (OML) probe theory. We find that the ambient electron contribution I{sub e}(U{sub LP}) to the probe characteristic is suitably analyzed in terms of three regions of applied probe potential U{sub LP}. In region I, where the probe is negatively charged (i.e., U{sub LP}probe position), the probe characteristic I{sub e}(U{sub LP}) is close to that of OML theory for a free probe in the ambient plasma. In the probe potential range U{sub LP}>U{sub 1}, there is first a transition region II in applied potential, U{sub 1}probe and the ambient plasma. This minimum gives the depth U{sub pl}-U{sub M} of a potential barrier that prevents the lowest energy ambient electrons from reaching the probe. For a high enough positive probe potential, in region III, the barrier becomes small. Here, I{sub e}(U{sub LP}) again approaches OML theory for a free probe. The boundary U{sub 2} between regions II and III is somewhat arbitrary; we propose a condition on the barrier, U{sub pl}-U{sub M}<probe characteristic is likely to depart from usual OML in crucial respects: (1) the ambient plasma potential U{sub pl} falls into the transition

  13. Langmuir Probe Measurements of Capacitive Radio Frequency Discharge for Mixture Gases

    Science.gov (United States)

    Tanisli, Murat; Sahin, Neslihan; Demir, Suleyman

    2016-10-01

    Radio frequency discharges at low pressure have been used for very much applications, but their properties have not well-known for plasma diagnostics. In this study, mixture discharges are obtained at the quartz glass reactor for different powers and flow rates under the laboratory conditions, and then the optical properties of gas discharges are examined by means of Langmuir probe. When the flow rates of gases and power values are changed, it can be investigated that how the plasma parameters change. Debye length is one of the important plasma parameters. Thus, the relationship between the mixture amount of two different gases and Debye length is determined from Langmuir probe data. The graphs obtained by using these data will give information about generating the discharge of mixture gases, in detail. Therefore, the results may be the useful reference for future works of industrial applications.

  14. Experimental Studies of Low-Pressure Plasma Jet by Means of Langmuir Probes and Emission Spectra

    Institute of Scientific and Technical Information of China (English)

    LIU Lei; CAO Jinxiang; NIU Tianye; WANG Liang; MENG Gang; LIU Xin; YUAN Lei; WU Runhui; ZHANG Shengjun; REN Aimin

    2009-01-01

    An investigation was made into the argon plasma jet that expanded in a low-pressure vacuum chamber. The spatial distributions of the parameters of the plasma jet with different supplied powers were measured using a ten-channel Langmuir probe array. The chemical species in the plasma jet were identified by emission spectroscopy. The electron excitation temperatures at two positions, 10 cm and 50 cm downstream from the nozzle exit were calculated, respectively, by the Boltzmann plot method.

  15. Time-Resolved Langmuir Probe Measurements in an Ionized PVD System

    Science.gov (United States)

    Juliano, D. R.; Hayden, D. B.; Ruzic, D. N.

    1997-10-01

    The experimental apparatus consists of a commercial-scale magnetron (Donated by Materials Research Corporation) with an RF coil between the target and substrate holder. This coil creates a secondary inductive plasma that ionizes a significant portion of the sputter flux en route from target to substrate. Ionization of the metal atoms that make up the sputter flux is highly sensitive to the high energy tail of the electron energy distribution, which in turn is highly dependent on the background gas mixture. Since there is some capacitive coupling from the coil this high energy population could change through the RF cycle. Time-averaged Langmuir probe measurements would not reveal either the extent of this high energy population or its time dependence. Further, if the probe voltage were held constant for such time-resolved measurements, they would yield incorrect results. At probe voltages above the plasma potential minimum the sheath is disrupted so that at points in the phase for which the probe voltage is below plasma potential the data is invalid. Therefore in order to take valid measurements at all phase points, it is necessary for the probe voltage to follow the RF variation in plasma potential. Using such a system, we have made time-resolved Langmuir probe measurements. Current-voltage traces as a function of phase then reveal plasma parameters as a function of time over the RF cycle for various background gases and operating parameters.

  16. Langmuir probe diagnostic suite in the C-2 field-reversed configuration

    Science.gov (United States)

    Roche, T.; Sun, X.; Armstrong, S.; Knapp, K.; Slepchenkov, M.

    2014-11-01

    Several in situ probes have been designed and implemented into the diagnostic array of the C-2 field-reversed configuration (FRC) at Tri Alpha Energy [M. Tuszewski et al. (the TAE Team), Phys. Rev. Lett. 108, 255008 (2012)]. The probes are all variations on the traditional Langmuir probe. They include linear arrays of triple probes, linear arrays of single-tipped swept probes, a multi-faced Gundestrup probe, and an ion-sensitive probe. The probes vary from 5 to 7 mm diameter in size to minimize plasma perturbations. They also have boron nitride outer casings that prevent unwanted electrical breakdown and reduce the introduction of impurities. The probes are mounted on motorized linear-actuators allowing for programmatic scans of the various plasma parameters over the course of several shots. Each probe has a custom set of electronics that allows for measurement of the desired signals. High frequency ( > 5MHz) analog optical-isolators ensure that plasma parameters can be measured at sub-microsecond time scales while providing electrical isolation between machine and data acquisition systems. With these probes time-resolved plasma parameters (temperature, density, spatial potential, flow, and electric field) can be directly/locally measured in the FRC jet and edge/scrape-off layer.

  17. Upgrade of Langmuir probe diagnostic in ITER-like tungsten mono-block divertor on experimental advanced superconducting tokamak

    Science.gov (United States)

    Xu, J. C.; Wang, L.; Xu, G. S.; Luo, G. N.; Yao, D. M.; Li, Q.; Cao, L.; Chen, L.; Zhang, W.; Liu, S. C.; Wang, H. Q.; Jia, M. N.; Feng, W.; Deng, G. Z.; Hu, L. Q.; Wan, B. N.; Li, J.; Sun, Y. W.; Guo, H. Y.

    2016-08-01

    In order to withstand rapid increase in particle and power impact onto the divertor and demonstrate the feasibility of the ITER design under long pulse operation, the upper divertor of the EAST tokamak has been upgraded to actively water-cooled, ITER-like tungsten mono-block structure since the 2014 campaign, which is the first attempt for ITER on the tokamak devices. Therefore, a new divertor Langmuir probe diagnostic system (DivLP) was designed and successfully upgraded on the tungsten divertor to obtain the plasma parameters in the divertor region such as electron temperature, electron density, particle and heat fluxes. More specifically, two identical triple probe arrays have been installed at two ports of different toroidal positions (112.5-deg separated toroidally), which can provide fundamental data to study the toroidal asymmetry of divertor power deposition and related 3-dimension (3D) physics, as induced by resonant magnetic perturbations, lower hybrid wave, and so on. The shape of graphite tip and fixed structure of the probe are designed according to the structure of the upper tungsten divertor. The ceramic support, small graphite tip, and proper connector installed make it possible to be successfully installed in the very narrow interval between the cassette body and tungsten mono-block, i.e., 13.5 mm. It was demonstrated during the 2014 and 2015 commissioning campaigns that the newly upgraded divertor Langmuir probe diagnostic system is successful. Representative experimental data are given and discussed for the DivLP measurements, then proving its availability and reliability.

  18. High heat flux Langmuir probe array for the DIII-D divertor platesa)

    Science.gov (United States)

    Watkins, J. G.; Taussig, D.; Boivin, R. L.; Mahdavi, M. A.; Nygren, R. E.

    2008-10-01

    Two modular arrays of Langmuir probes designed to handle a heat flux of up to 25 MW/m2 for 10 s exposures have been installed in the lower divertor target plates of the DIII-D tokamak. The 20 pyrolytic graphite probe tips have more than three times higher thermal conductivity and 16 times larger mass than the original DIII-D isotropic graphite probes. The probe tips have a fixed 12.5° surface angle to distribute the heat flux more uniformly than the previous 6 mm diameter domed collectors and a symmetric "rooftop" design to allow operation with reversed toroidal magnetic field. A large spring-loaded contact area improves heat conduction from each probe tip through a ceramic insulator into a cooled graphite divertor floor tile. The probe tips, brazed to molybdenum foil to ensure good electrical contact, are mounted in a ceramic tray for electrical isolation and reliable cable connections. The new probes are located 1.5 cm radially apart in a staggered arrangement near the entrance to the lower divertor pumping baffle and are linearly spaced 3 cm apart on the shelf above the in-vessel cryopump. Typical target plate profiles of Jsat, Te, and Vf with 4 mm spatial resolution are shown.

  19. The Use of Langmuir Probes in Non-Maxwellian Space Plasmas

    Science.gov (United States)

    Hoegy, Walter R.; Brace, Larry H.

    1998-01-01

    Disturbance of the Maxwellian plasma may occur in the vicinity of a spacecraft due to photoemission, interactions between the spacecraft and thermospheric gases, or electron emissions from other devices on the spacecraft. Significant non-maxwellian plasma distributions may also occur in nature as a mixture of ionospheric and magnetospheric plasmas or secondaries produced by photoionization in the thermosphere or auroral precipitation. The general formulas for current collection (volt-ampere curves) by planar, cylindrical, and spherical Langmuir probes in isotropic and anisotropic non-maxwellian plasmas are examined. Examples are given of how one may identify and remove the non-maxwellian components in the Langmuir probe current to permit the ionospheric parameters to be determined. Theoretical volt-ampere curves presented for typical examples of non-maxwellian distributions include: two-temperature plasmas and a thermal plasma with an energetic electron beam. If the non-ionospheric electrons are Maxwellian at a temperature distinct from that of the ionosphere electrons, the volt-ampere curves can be fitted directly to obtain the temperatures and densities of both electron components without resorting to differenting the current. For an arbitrary isotropic distribution, the current for retarded particles is shown to be identical for the three geometries. For anisotropic distributions, the three probe geometries are not equally suited for measuring the ionospheric electron temperature and density or for determining the distribution function in the presence of non-maxwellian back-round electrons.

  20. Complexes of carbon nanotubes with oligonucleotides in thin Langmuir-Blodgett films to detect electrochemically hybridization

    Science.gov (United States)

    Egorov, A. S.; Egorova, V. P.; Krylova, H. V.; Lipnevich, I. V.; Orekhovskaya, T. I.; Veligura, A. A.; Govorov, M. I.; Shulitsky, B. G.

    2014-10-01

    Self-assembled complexes consisting of thin multi-walled carbon nanotubes (MWCNTs) and DNA-oligonucleotides which are able to a cooperative binding to complementary oligonucleotides have been investigated. It was establised a high-performance charge transport in nanostructured Langmuir-Blodgett complexes thin MWCNTs/DNA. A method to electrochemically detect DNA hybridization on the self-organized structures has been proposed.

  1. Influence of temperature fluctuations on plasma turbulence investigations with Langmuir probes

    CERN Document Server

    Nold, B; Ramisch, M; Huang, Z; Müller, H W; Scott, B D; Stroth, U

    2011-01-01

    The reliability of Langmuir probe measurements for plasma-turbulence investigations is studied on GEMR gyro-fluid simulations and compared with results from conditionally sampled I-V characteristics as well as self-emitting probe measurements in the near scrape-off layer of the tokamak ASDEX Upgrade. In this region, simulation and experiment consistently show coherent in-phase fluctuations in density, plasma potential and also in electron temperature. Ion-saturation current measurements turn out to reproduce density fluctuations quite well. Fluctuations in the floating potential, however, are strongly influenced by temperature fluctuations and, hence, are strongly distorted compared to the actual plasma potential. These results suggest that interpreting floating as plasma-potential fluctuations while disregarding temperature effects is not justified near the separatrix of hot fusion plasmas. Here, floating potential measurements lead to corrupted results on the ExB dynamics of turbulent structures in the cont...

  2. Dual Langmuir-probe array for 3D plasma studies in TORPEX

    Science.gov (United States)

    Baquero-Ruiz, M.; Avino, F.; Chellai, O.; Fasoli, A.; Furno, I.; Jacquier, R.; Manke, F.; Patrick, S.

    2016-11-01

    We have designed and installed a new Langmuir-probe (LP) array diagnostic to determine basic three-dimensional (3D) features of plasmas in TORPEX. The diagnostic consists of two identical LP arrays, placed on opposite sides of the apparatus, which provide comprehensive coverage of the poloidal cross section at the two different toroidal locations. Cross correlation studies of signals from the arrays provide a basic way to extract 3D information from the plasmas, as experiments show. Moreover, the remarkable signal-to-noise performance of the front-end electronics allows us to follow a different approach in which we combine information from all probes in both arrays to reconstruct elementary 3D plasma structures at each acquisition time step. Then, through data analysis, we track the structures as they evolve in time. The LP arrays include a linear-motion mechanism that can displace radially the probes located on the low field side for experiments that require fine-tuning of the probe locations, and for operational compatibility with the recently installed in-vessel toroidal conductor.

  3. Ion temperature measurements by means of a combined force - Mach - Langmuir probe

    Energy Technology Data Exchange (ETDEWEB)

    Lunt, T.; Hidalgo, C.; Calderon, E.

    2005-07-01

    With respect to plasma-wall interactions, particle and energy fluxes are commonly of particular interest. Although typical pressures in plasma experiments are four (edge layer of fusion devices) to six (cold discharges) orders of magnitude smaller than atmospheric pressure, a force sensor such as that developed by Chavers [1] shown in Fig.1, immersed in a streaming plasma is sensitive enough to measure momentum fluxes on its target surface. In the edge layer of fusion plasmas, the measurement of ion temperature constitutes a particular problem. Although ion sensitive electrical probes, developed by Katsumata [2] and Ratynskaia et al.[3] and tested by Ezumi [4] offer advantages like a high spatial and temporal resolution, considerable theoretical efforts [5] have to be made to interpret the measured data. The probes, due to their working principle based on the difference in Lamor radii, are sensitive to strength and orientation of the magnetic field. Charge exchange measurements, on the other hand, become ineffective for ion temperatures lower than ?100 eV and are thus unsuitable for the edge layer. As electron temperature and density can be determined by Langmuir probes, the missing parameter can also be obtained from the force sensor, which is sensitive to the total pressure p = n(Ti+Te). Although this type of diagnostic will have a limited time resolution due to mechanical inertia as compared to electrical probes, the interpretation of data will be less questionable. Furthermore the sensor will also be applicable to fully ionized plasmas, where optical methods fail. (Author)

  4. Plasma gas identification using the single Langmuir probe at the PUPR mirror-cusp

    Energy Technology Data Exchange (ETDEWEB)

    Gaudier, Jorge R; Rivera, Ramon; Colmenares, Franklin; Lleonart, Giovanni; Carrera, Miguel A; Mollina, Omar; Gonzalez, Angel; Leal-Quiros, Edbertho; Prelas, Mark A [University of Missouri-Columbia, Columbia, MO (United States); Plasma Physics Laboratory, Polytechnic University of Puerto Rico, San Juan (Puerto Rico)

    2008-10-15

    Plasma can be produced by ionizing gas particles. Different gases will produce different plasma parameters. Using the single Langmuir probe, the characteristics of argon, nitrogen, hydrogen and residual gas (no gas injected) can be compared. Using a mass spectrometer, we can identify the elements present in the chamber and relate the probe characteristic curve with its respective elements. Each gas has its own characteristic appearance; by looking at the form of the curve it is possible to identify the gas producing the plasma. Plasma parameters may vary due to a number of factors; probe position, microwave power, magnetic confinement, gas and pressure are the factors that we can control. In order to compare gases, operation parameters must remain the same for all tests. Plasma tests were administered on different gases using a microwave power of 198 W to heat the gas and initiate ionization and a coil current of 390 A, while running in mirror mode; that is, the current flowing through two parallel solenoid magnets (coils) used to confine plasma runs in the same direction, making the magnetic field complementary in the direction of the probe. The coils, distance from center to center was fixed at 60 cm. In mirror mode, plasma is confined in a hot electron ring produced between the coils. The ring contains the highest plasma density in the chamber, but the center remains at lower density. The probe was submerged into the plasma 110 cm from the flange, the collector (disc) was 14 cm from the center of the chamber and 18.12 cm from the electron ring. Low power (4% of a 5 kW microwave generator) was used to protect the probes from burning at that close range. The pressure at the chamber was 2.9E-4 Torr. Good readings were taken and analyzed. Measurements with variable microwave power and variable magnetic field strength were also studied to determine whether there is a linear relationship between the machine setup and plasma conditions.

  5. Langmuir probe study of an inductively coupled magnetic-pole-enhanced helium plasma

    Science.gov (United States)

    Younus, Maria; Rehman, N. U.; Shafiq, M.; Naeem, M.; Zaka-ul-Islam, M.; Zakaullah, M.

    2017-03-01

    This study reports the effects of RF power and filling gas pressure variation on the plasma parameters, including the electron number density n e , electron temperature T e , plasma potential V p , skin depth δ, and electron energy probability functions (EEPFs) in a low-pressure inductively coupled helium plasma source with magnetic pole enhancement. An RF compensated Langmuir probe is used to measure these plasma parameters. It is observed that the electron number density increases with both the RF power and the filling gas pressure. Conversely, the electron temperature decreases with increasing RF power and gas pressure. It is also noted that, at low RF powers and gas pressures, the EEPFs are non-Maxwellian, while at RF powers of ≥50 W, they evolve into a Maxwellian distribution. The dependences of the skin depth and plasma potential on the RF power are also studied and show a decreasing trend.

  6. Understanding narrow SOL power flux component in COMPASS limiter plasmas by use of Langmuir probes

    Energy Technology Data Exchange (ETDEWEB)

    Dejarnac, R., E-mail: dejarnac@ipp.cas.cz [Institute of Plasma Physics, ASCR, Za Slovankou 3, 182 00 Prague (Czech Republic); Stangeby, P.C. [University of Toronto, Institute for Aerospace Studies, 4925 Dufferin St., Toronto M3H 5T6 (Canada); Goldston, R.J. [Princeton Plasma Physics Laboratory, Princeton, NJ 08543 (United States); Gauthier, E. [CEA, IRFM, F-13108 St Paul-lez-Durance (France); Horacek, J.; Hron, M. [Institute of Plasma Physics, ASCR, Za Slovankou 3, 182 00 Prague (Czech Republic); Kocan, M. [ITER Organisation, Route de Vinon-sur-Verdon, CS 90 046, F-13067 St Paul-lez-Durance cedex (France); Komm, M.; Panek, R. [Institute of Plasma Physics, ASCR, Za Slovankou 3, 182 00 Prague (Czech Republic); Pitts, R.A. [ITER Organisation, Route de Vinon-sur-Verdon, CS 90 046, F-13067 St Paul-lez-Durance cedex (France); Vondracek, P. [Institute of Plasma Physics, ASCR, Za Slovankou 3, 182 00 Prague (Czech Republic)

    2015-08-15

    The narrow scrape-off layer power component observed in COMPASS inner wall limiter circular discharges by means of IR thermography is investigated by Langmuir probes embedded in the limiter. The power flux profiles are in good agreement with IR observations and can be described by a double-exponential decay with a short decay length (<5 mm) just outside the separatrix and a longer one (∼50 mm) for the rest of the profile in the main scrape-off layer. Non-ambipolar currents measured at the limiter apex play a relatively modest role in the formation of the narrow component. The fraction of the deposited power due to non-ambipolarity varies between 2% and 45%. On the other hand, the measured power widths are roughly consistent in magnitude with a model that takes into account drift effects, suggesting these effects may be dominant.

  7. Microwave power coupling with electron cyclotron resonance plasma using Langmuir probe

    Indian Academy of Sciences (India)

    S K Jain; V K Senecha; P A Naik; P R Hannurkar; S C Joshi

    2013-07-01

    Electron cyclotron resonance (ECR) plasma was produced at 2.45 GHz using 200 – 750 W microwave power. The plasma was produced from argon gas at a pressure of 2 × 10−4 mbar. Three water-cooled solenoid coils were used to satisfy the ECR resonant conditions inside the plasma chamber. The basic parameters of plasma, such as electron density, electron temperature, floating potential, and plasma potential, were evaluated using the current–voltage curve using a Langmuir probe. The effect of microwave power coupling to the plasma was studied by varying the microwave power. It was observed that the optimum coupling to the plasma was obtained for ∼ 600 W microwave power with an average electron density of ∼ 6 × 1011 cm−3 and average electron temperature of ∼ 9 eV.

  8. Soft Particle Spectrometer, Langmuir Probe, and Data Analysis for Aerospace Magnetospheric/Thermospheric Coupling Rocket Program

    Science.gov (United States)

    Sharber, J. R.; Frahm, R. A.; Scherrer, J. R.

    1997-01-01

    Under this grant two instruments, a soft particle spectrometer and a Langmuir probe, were refurbished and calibrated, and flown on three instrumented rocket payloads as part of the Magnetosphere/Thermosphere Coupling program. The flights took place at the Poker Flat Research Range on February 12, 1994 (T(sub o) = 1316:00 UT), February 2, 1995 (T(sub o) = 1527:20 UT), and November 27, 1995 (T(sub o) = 0807:24 UT). In this report the observations of the particle instrumentation flown on all three of the flights are described, and brief descriptions of relevant geophysical activity for each flight are provided. Calibrations of the particle instrumentation for all ARIA flights are also provided.

  9. Langmuir probe study in the nonresonant current drive regime of helicon discharge

    Indian Academy of Sciences (India)

    Manash Kumar Paul; Dhiraj Bora

    2008-07-01

    Characterization of the current drive regime is done for helicon wave-generated plasma in a torus, at a very high operating frequency. A radiofrequency-compensated Langmuir probe is designed and used for the measurement of plasma parameters along with the electron energy distributions in radial scans of the plasma. The electron energy distribution patterns obtained in the operational regime suggest that Landau damping cannot be responsible for the efficient helicon discharge in the present study. A typical peaked radial density profile, high plasma temperature and absence of an appreciable amount of energetic electrons for resonant wave–particle interactions, suggest that the chosen operational regime is suitable for the study of nonresonant current drive by helicon wave. Successful and significant current drive achieved in our device clearly demonstrates the capability of nonresonant current drive by helicon waves in the present operational regime.

  10. Langmuir probe diagnostics of an atmospheric pressure, vortex-stabilized nitrogen plasma jet

    Energy Technology Data Exchange (ETDEWEB)

    Prevosto, L.; Mancinelli, B. R. [Grupo de Descargas Electricas, Departamento Ingenieria Electromecanica, Facultad Regional Venado Tuerto (UTN), Laprida 651, (2600) Venado Tuerto, Santa Fe (Argentina); Kelly, H. [Grupo de Descargas Electricas, Departamento Ingenieria Electromecanica, Facultad Regional Venado Tuerto (UTN), Laprida 651, (2600) Venado Tuerto, Santa Fe (Argentina) and Instituto de Fisica del Plasma (CONICET), Departamento de Fisica, Facultad de Ciencias Exactas y Naturales UBA Ciudad Universitaria Pab. I, (1428) Buenos Aires (Argentina)

    2012-09-15

    Langmuir probe measurements in an atmospheric pressure direct current (dc) plasma jet are reported. Sweeping probes were used. The experiment was carried out using a dc non-transferred arc torch with a rod-type cathode and an anode of 5 mm diameter. The torch was operated at a nominal power level of 15 kW with a nitrogen flow rate of 25 Nl min{sup -1}. A flat ion saturation region was found in the current-voltage curve of the probe. The ion saturation current to a cylindrical probe in a high-pressure non local thermal equilibrium (LTE) plasma was modeled. Thermal effects and ionization/recombination processes inside the probe perturbed region were taken into account. Averaged radial profiles of the electron and heavy particle temperatures as well as the electron density were obtained. An electron temperature around 11 000 K, a heavy particle temperature around 9500 K and an electron density of about 4 Multiplication-Sign 10{sup 22} m{sup -3}, were found at the jet centre at 3.5 mm downstream from the torch exit. Large deviations from kinetic equilibrium were found throughout the plasma jet. The electron and heavy particle temperature profiles showed good agreement with those reported in the literature by using spectroscopic techniques. It was also found that the temperature radial profile based on LTE was very close to that of the electrons. The calculations have shown that this method is particularly useful for studying spraying-type plasma jets characterized by electron temperatures in the range 9000-14 000 K.

  11. Magnetic field and quadruple Langmuir probe measurements in the plume of the plasmoid thruster experiment

    Science.gov (United States)

    Koelfgen, Syri Jo

    The development of high specific impulse rocket engines is essential for fast and efficient space travel. The plasmoid thruster, a novel propulsion concept with the potential for producing a high specific impulse, was investigated in light of this need. This pulsed inductive rocket utilizes the Lorentz force to accelerate plasmoids and produce thrust. The Plasmoid Thruster Experiment (PTX) was designed to experimentally evaluate the thruster concept. PTX operates by producing plasmoids in a conical theta-pinch coil and ejecting them at high velocity. Measurements of the plasmoid magnetic fields, electron temperature (Te), electron number density (n e) and Mach number (M) were taken in the PTX plume with a B˙ probe array and a quadruple Langmuir probe. The measurements were used for calculating exit velocity and Isp. High-speed photographs were also obtained for capturing images of the plasmoids and estimating their velocity. The magnetic field data showed behavior characteristic of plasmoids, such as the occurrence of the maximum axial magnetic field on axis and magnetic field reversal. The quadruple Langmuir probe data revealed several factors that influence thruster operation, including propellant choice, supply pressure and propellant injection timing (tpuff). For Ar propellant at supply pressures of 14--34 psig and tpuff = 2200 mus, Te ranged from 2--7 eV, ne ranged from 1.5 x 1020 m-3 to 3.5 x 1020 m-3, and M ranged from 3.3--3.8 in PTX. For H2 propellant, T e ranged from 15--27 eV, ne ranged from 0.8 x 1020 m-3 to 1.5 x 1020 m-3, and M ranged from 1.4--2.6, for supply pressures of 9--38 psig and tpuff = 1200--2400 mus. Analysis of the plume measurements yielded high thruster exit velocities, indicating that the plasmoid thruster can produce a high Isp. Velocities of 24 km/s, 35 km/s and 46 km/s were calculated for supply pressures of 38 psig, 24 psig and 9 psig of H2 propellant, respectively. These exit velocities deliver Isp values of 2,400 s, 3,500 s and 4

  12. Langmuir Probe Measurements in an Inductively Coupled Ar/CF4 Plasmas

    Science.gov (United States)

    Rao, M. V. V. S.; Meyyappan, M.; Sharma, S. P.; Arnold, James O. (Technical Monitor)

    2000-01-01

    Technological advancement in the microelectronics industry requires an understanding of the physical and chemical processes occurring in plasmas of fluorocarbon gases, such as carbon tetrafluoride (CF4) which is commonly used as an etchant, and their mixtures to optimize various operating parameters. In this paper we report data on electron number density (ne), electron temperature'(Te), electron energy distribution function (EEDF), mean electron energy, ion number density (ni), and plasma potential (Vp) measured by using Langmuir probe in an inductively coupled 13.56 MHz radio frequency plasmas generated in 50%Ar:50%CF4 mixture in the GEC cell. The probe data were recorded at various radial positions providing radial profiles of these plasma parameters at 10-50 mTorr pressures and 200 W and 300 W of RF power. Present measurements indicate that the electron and ion number densities increase with increase in pressure and power. Whereas the plasma potential and electron temperature decrease with increase in pressure, and they weakly depend on RF power. The radial profiles exhibit that the electron and ion number densities and the plasma potential peak at the center of the plasma with an exponential fall away from it, while the electron temperature has a minimum at the center and it increases steadily towards the electrode edge. The EEDFs have a characteristic drop near the low energy end at all pressures and pressures and their shapes represent non-Maxwellian plasma and exhibit more like Druyvesteyn energy distribution.v

  13. Plasma monitoring of the RLVIP-process with a Langmuir probe

    Science.gov (United States)

    Huber, D.; Hallbauer, A.; Pulker, H. K.

    2005-09-01

    The aim of this investigation was to study the characteristics of a reactive-low-voltage-high-current-ion-plating plasma and to correlate the observed plasma data with the properties of films deposited under such conditions. A Langmuir probe system (Smart Probe - Scientific Systems) was inserted into a Balzers BAP 800 ion plating plant above the e-gun evaporation source close to the insulated substrate holder. In this position during RLVIP deposition, plasma potential, floating potential, self-bias voltage, electron temperature, ion current density, and particle number density were measured and calculated, respectively. All measurements were performed in dependence of arc current (20-80A) and oxygen partial pressure (1 - 36 x 10-4mbar). With rising arc current the number of charged particles, the self-bias voltage between plasma and substrates as well as the energy of the condensing and bombarding species were increased. These data explain the increase of density, refractive index and mechanical stress of RLVIP-metal-oxide-layers, like Ta2O5 and Nb2O5, deposited with higher arc currents. An increase of gas pressure decreased the energy of the particles and therefore reduced slightly film density and refractive index. However, it improved chemistry and eliminated unwanted residual optical absorption and also decreased compressive mechanical film stress.

  14. Nanoscale Hybrid Langmuir-Blodgett Films Based on Cerium-Substituted Heteropolymolybdate and Polyquinoline

    Institute of Scientific and Technical Information of China (English)

    王峥; 柳士忠; 杜祖亮; 胡振纲; 张洪杰

    2003-01-01

    Nanoscale hybrid organic/inorganic Langmuir-Blodgett films of cerium-substituted heteropolymolybdates(Ce-HPMo) and π-conjugated macromolecule poly(1,2-dihydro-2,2,4-trimethyl)quinoline(PQ) were obtained with auxiliary film-forming material stearic acid(SA) or octadecylamine(ODA). The surface pressure-area isotherms illuminate the formation of the hybrid LB films of PQ/ODA/Ce-HPMo and P Q/SA/Ce-HPMo. The different film-forming mechanism was discussed when the different auxiliary film-forming materials were used in the system. The absorption spectra indicate that the molecules of PQ and Ce-HPMo are incorporated into the LB films. Tapping-mode AFM image reveals a granular surface texture of nanosized Ce-substituted heteropolymolybdate. STM image shows that the conductivity is greatly improved after Ce-substituted heteropolymolybdates are incorporated in the films.

  15. Langmuir probe study of a titanium pulsed filtered cathodic arc discharge

    Energy Technology Data Exchange (ETDEWEB)

    Andruczyk, D [School of Physics, University of Sydney, NSW 2006 (Australia); Tarrant, R N [School of Physics, University of Sydney, NSW 2006 (Australia); James, B W [School of Physics, University of Sydney, NSW 2006 (Australia); Bilek, M M M [School of Physics, University of Sydney, NSW 2006 (Australia); Warr, G B [School of Physics, University of Sydney, NSW 2006 (Australia)

    2006-08-01

    A Langmuir probe has been used to make measurements of plasma parameters as a function of time at the substrate position in a magnetically-filtered pulsed cathodic arc discharge. Electron density, n{sub e}, and effective electron temperature, T{sub eff}, were calculated as a function of time from the I-V curves. The Druyvesteyn method was used to determine the electron energy distribution. Ion density was calculated using the assumption of plasma quasi-neutrality and an average ion charge state. Results show that over the plateau region (350-600 {mu}s) of the pulse, the electron energy distribution is Maxwellian with T{sub eff} = T{sub e} = (10 {+-} 1) eV. During the rise and fall times of the pulse, the electron energy distribution is non-Maxwellian with an effective temperature of up to 15 to 20 eV during the rise time and {approx}7 eV during the fall time. The electron density during the plateau is n{sub e} = (3.0-6.0 {+-} 0.5) x 10{sup 17} m{sup -3}.

  16. Fluorescent hybridization probes for nucleic acid detection.

    Science.gov (United States)

    Guo, Jia; Ju, Jingyue; Turro, Nicholas J

    2012-04-01

    Due to their high sensitivity and selectivity, minimum interference with living biological systems, and ease of design and synthesis, fluorescent hybridization probes have been widely used to detect nucleic acids both in vivo and in vitro. Molecular beacons (MBs) and binary probes (BPs) are two very important hybridization probes that are designed based on well-established photophysical principles. These probes have shown particular applicability in a variety of studies, such as mRNA tracking, single nucleotide polymorphism (SNP) detection, polymerase chain reaction (PCR) monitoring, and microorganism identification. Molecular beacons are hairpin oligonucleotide probes that present distinctive fluorescent signatures in the presence and absence of their target. Binary probes consist of two fluorescently labeled oligonucleotide strands that can hybridize to adjacent regions of their target and generate distinctive fluorescence signals. These probes have been extensively studied and modified for different applications by modulating their structures or using various combinations of fluorophores, excimer-forming molecules, and metal complexes. This review describes the applicability and advantages of various hybridization probes that utilize novel and creative design to enhance their target detection sensitivity and specificity.

  17. Hybrid Langmuir and Langmuir-Blodgett films of a viologen derivative and TCNQ in a mixed valence state: preparation route and characterization

    Science.gov (United States)

    Martín, Santiago; Cea, Pilar; Lafuente, Carlos; Royo, Félix M.; López, María. C.

    2004-08-01

    Hybrid Langmuir and Langmuir-Blodgett (LB) films containing two moieties of great chemical and electrochemical interest, namely a viologen derivative and tetracyanoquinodimethane (TCNQ) in a mixed valence state, were fabricated. To do so, positively ionized monolayers of 1,1 '-dioctadecyl 4,4 '-bipyridilium were prepared onto aqueous solutions of tetracyanoquinodimethane in a mixed valence state. Surface pressure vs. area ( π- A), surface potential vs. area (Δ V- A), and Brewster angle microscope (BAM) images were recorded and interpreted in terms of molecular interactions as well as the incorporation of the hydrophobic anions into the monolayer. After a comprehensive study, a 10 -6 M TCNQ aqueous solution was chosen as the best one to build hybrid LB films. Thus, the floating films were transferred onto solid substrates that were characterized using several techniques including ultraviolet-visible (UV-vis), infrared (IR), scanning electron microscopy (SEM), and atomic force microscopy (AFM) proving the incorporation of the TCNQ onto the film. These films show a good optical conductivity as well as a high degree of order and layers with a constant architecture.

  18. Polythiophene-gold nanoparticle hybrid systems: Langmuir-Blodgett assembly of nanostructured films

    Science.gov (United States)

    Jayaraman, Sundaramurthy; Yu, Liew Ting; Srinivasan, M. P.

    2013-03-01

    In this work, we demonstrate a simple method of synthesizing nanoscale polythiophene-gold nanoparticle (AuNP) hybrid systems assembled by the Langmuir-Blodgett (LB) method. Regio-regular poly(3-(2-methoxyethoxy)ethoxymethyl)thiophene-2,5-diyl (PMEEMT) and poly(3-dodecylthiophene) (PDDT) were employed as the polymeric constituents. The presence of PDDT improved the amphiphilicity of PMEEMT by addressing the phase separation that occurred due to convective hydrodynamic instability on the substrate. 4 layer stacks of 90% and 99% PMEEMT films exhibited uniform film structure with a significant reduction in phase separation. A detailed mechanism for minimization of the surface effect has been proposed based on the interaction of polythiophenes with the substrate. For the first time, an ex situ approach has been adopted to incorporate AuNPs into LB films without affecting the film morphology and uniformity. The incorporation of AuNPs into the polythiophene matrix, aided by the affinity of sulphur for gold, was strongly dependent on the molecular arrangement of the matrix, which in turn depended on the composition of the matrix. The hybrid polythiophene films exhibited enhanced conductivity and can be applied in sensors, photovoltaics and memory devices.In this work, we demonstrate a simple method of synthesizing nanoscale polythiophene-gold nanoparticle (AuNP) hybrid systems assembled by the Langmuir-Blodgett (LB) method. Regio-regular poly(3-(2-methoxyethoxy)ethoxymethyl)thiophene-2,5-diyl (PMEEMT) and poly(3-dodecylthiophene) (PDDT) were employed as the polymeric constituents. The presence of PDDT improved the amphiphilicity of PMEEMT by addressing the phase separation that occurred due to convective hydrodynamic instability on the substrate. 4 layer stacks of 90% and 99% PMEEMT films exhibited uniform film structure with a significant reduction in phase separation. A detailed mechanism for minimization of the surface effect has been proposed based on the interaction

  19. Characterization of RF He-N2/Ar mixture plasma via Langmuir probe and optical emission spectroscopy techniques

    Science.gov (United States)

    Younus, Maria; Rehman, N. U.; Shafiq, M.; Hussain, S. S.; Zakaullah, M.; Zaka-ul-Islam, M.

    2016-08-01

    A Magnetic Pole Enhanced inductively coupled RF H e - N 2 / A r plasma is characterized using a Langmuir probe and optical emission spectroscopy (OES) techniques. The effect of helium mixing on electron density ( n e ) and temperature ( T e ) , electron energy probability functions (EEPFs), [ N ] atomic density, and N 2 dissociation is investigated. A Langmuir probe and a zero slope method based on trace rare gas-optical emission spectroscopy (TRG-OES) are employed to measure the electron temperature. It is noted that the electron temperature shows an increasing trend for both methods. However, the temperature measured by a zero slope method T e ( Z . S ) approaches the temperature measured by a Langmuir probe; T e ( L . P ) at 56% and above helium concentration in the discharge. "Advance actinometry" is employed to monitor the variation in [ N ] atomic density with helium concentration and gas pressure. It is noted that [ N ] atomic density increases at 56% and above helium in the discharge, which is consistent with the trend of electron temperature and EEPFs. A drastic enhancement in N 2 dissociation fraction D 1 determined by "advance actinometry" is noted at 56% and above helium concentration in the mixture due to modifications in different population and depopulation mechanisms. However, it is also noted that the dissociation fraction D 2 determined by intensity ratio method increases linearly with helium addition.

  20. Langmuir Probe and Mass Spectroscopic Measurements in Inductively Coupled CF4 Plasmas

    Science.gov (United States)

    Rao, M. V. V. S.; Sharma, Surendra; Cruden, B. A.; Meyyappan, M.

    2001-01-01

    Abstract Electron and ion energy distribution functions and other plasma parameters such as plasma potential (V(sub p)) , electron temperature (T(sub e)), and electron and ion number densities (n (sub e) and n(sub i)) in low pressure CF4 plasmas have been measured. The experiments were conducted in a GEC cell using an inductively coupled plasma (ICP) device powered by a 13.56 MHz radio-frequency (rf) power source. The measurements were made at 300 W of input rf power at 10, 30 and 50 mTorr gas pressures. Langmuir probe measurements suggest that n(sub e), n(sub i) and V(sub p) remain constant over 60% of the central electrode area, beyond which they decrease. Within the limits of experimental error (+/- 0.25 eV), T(sub e) remains nearly constant over the electrode area. T(sub e) and V(sub p) increase with a decrease in pressure. n(sub e) and n(sub i) are not affected as significantly as T(sub e) or V(sub p) by variation in the gas pressure. The electron energy distribution function (EEDF) measurements indicate a highly non-Maxwellian plasma. CF3+ is the most dominant ion product of the plasma, followed by CF2+ and CF+. The concentrations of CF2+ and CF+ are much larger than that is possible from direct electron impact ionization of the parent gas. The cross-section data suggest that the direct electron impact ionization of fragment neutrals and negative ion production by electron attachment may be responsible for increase of the minor ions.

  1. Thermal ion imagers and Langmuir probes in the Swarm electric field instruments

    Science.gov (United States)

    Knudsen, D. J.; Burchill, J. K.; Buchert, S. C.; Eriksson, A. I.; Gill, R.; Wahlund, J.-E.; Åhlen, L.; Smith, M.; Moffat, B.

    2017-02-01

    The European Space Agency's three Swarm satellites were launched on 22 November 2013 into nearly polar, circular orbits, eventually reaching altitudes of 460 km (Swarm A and C) and 510 km (Swarm B). Swarm's multiyear mission is to make precision, multipoint measurements of low-frequency magnetic and electric fields in Earth's ionosphere for the purpose of characterizing magnetic fields generated both inside and external to the Earth, along with the electric fields and other plasma parameters associated with electric current systems in the ionosphere and magnetosphere. Electric fields perpendicular to the magnetic field B→ are determined through ion drift velocity v→i and magnetic field measurements via the relation E→⊥=-v→i×B→. Ion drift is derived from two-dimensional images of low-energy ion distribution functions provided by two Thermal Ion Imager (TII) sensors viewing in the horizontal and vertical planes; v→i is corrected for spacecraft potential as determined by two Langmuir probes (LPs) which also measure plasma density ne and electron temperature Te. The TII sensors use a microchannel-plate-intensified phosphor screen imaged by a charge-coupled device to generate high-resolution distribution images (66 × 40 pixels) at a rate of 16 s-1. Images are partially processed on board and further on the ground to generate calibrated data products at a rate of 2 s-1; these include v→i, E→⊥, and ion temperature Ti in addition to electron temperature Te and plasma density ne from the LPs.

  2. Polythiophene-gold nanoparticle hybrid systems: Langmuir-Blodgett assembly of nanostructured films.

    Science.gov (United States)

    Jayaraman, Sundaramurthy; Yu, Liew Ting; Srinivasan, M P

    2013-04-01

    In this work, we demonstrate a simple method of synthesizing nanoscale polythiophene-gold nanoparticle (AuNP) hybrid systems assembled by the Langmuir-Blodgett (LB) method. Regio-regular poly(3-(2-methoxyethoxy)ethoxymethyl)thiophene-2,5-diyl (PMEEMT) and poly(3-dodecylthiophene) (PDDT) were employed as the polymeric constituents. The presence of PDDT improved the amphiphilicity of PMEEMT by addressing the phase separation that occurred due to convective hydrodynamic instability on the substrate. 4 layer stacks of 90% and 99% PMEEMT films exhibited uniform film structure with a significant reduction in phase separation. A detailed mechanism for minimization of the surface effect has been proposed based on the interaction of polythiophenes with the substrate. For the first time, an ex situ approach has been adopted to incorporate AuNPs into LB films without affecting the film morphology and uniformity. The incorporation of AuNPs into the polythiophene matrix, aided by the affinity of sulphur for gold, was strongly dependent on the molecular arrangement of the matrix, which in turn depended on the composition of the matrix. The hybrid polythiophene films exhibited enhanced conductivity and can be applied in sensors, photovoltaics and memory devices.

  3. Plasma Potential and Langmuir Probe Measurements in the Near-field Plume of the NASA-457Mv2 Hall Thruster

    Science.gov (United States)

    Shastry, Rohit; Huang, Wensheng; Herman, Daniel A.; Soulas, George C.; Kamhawi, Hani

    2012-01-01

    In order to further the design of future high-power Hall thrusters and provide experimental validation for ongoing modeling efforts, plasma potential and Langmuir probe measurements were performed on the 50-kW NASA-457Mv2. An electrostatic probe array comprised of a near-field Faraday probe, single Langmuir probe, and emissive probe was used to interrogate the near-field plume from approximately 0.1 - 2.0 mean thruster diameters downstream of the thruster exit plane at the following operating conditions: 300 V, 400 V and 500 V at 30 kW and 500 V at 50 kW. Results have shown that the acceleration zone is limited to within 0.4 mean thruster diameters of the exit plane while the high-temperature region is limited to 0.25 mean thruster diameters from the exit plane at all four operating conditions. Maximum plasma potentials in the near-field at 300 and 400 V were approximately 50 V with respect to cathode potential, while maximum electron temperatures varied from 24 - 32 eV, depending on operating condition. Isothermal lines at all operating conditions were found to strongly resemble the magnetic field topology in the high-temperature regions. This distribution was found to create regions of high temperature and low density near the magnetic poles, indicating strong, thick sheath formation along these surfaces. The data taken from this study are considered valuable for future design as well as modeling validation.

  4. Plasma Potential and Langmuir Probe Measurements in the Near-field Plume of the NASA 300M Hall Thruster

    Science.gov (United States)

    Herman, Daniel A; Shastry, Rohit; Huang, Wensheng; Soulas, George C.; KamHawi, Hani

    2012-01-01

    In order to aid in the design of high-power Hall thrusters and provide experimental validation for existing modeling efforts, plasma potential and Langmuir probe measurements were performed in the near-field plume of the NASA 300M Hall thruster. A probe array consisting of a Faraday probe, Langmuir probe, and emissive probe was used to interrogate the plume from approximately 0.1 - 2.0 DT,m downstream of the thruster exit plane at four operating conditions: 300 V, 400 V, and 500 V at 20 kW as well as 300 V at 10 kW. Results show that the acceleration zone and high-temperature region were contained within 0.3 DT,m from the exit plane at all operating conditions. Isothermal lines were shown to strongly follow magnetic field lines in the nearfield, with maximum temperatures ranging from 19 - 27 eV. The electron temperature spatial distribution created large drops in measured floating potentials in front of the magnetic pole surfaces where the plasma density was small, which suggests strong sheaths at these surfaces. The data taken have provided valuable information for future design and modeling validation, and complements ongoing internal measurement efforts on the NASA 300 M.

  5. Plasma Potential and Langmuir Probe Measurements in the Near-field Plume of the NASA-300M Hall Thruster

    Science.gov (United States)

    Herman, Daniel A.; Shastry, Rohit; Huang, Wensheng; Soulas, George C.; Kamhawi, Hani

    2012-01-01

    In order to aid in the design of high-power Hall thrusters and provide experimental validation for existing modeling efforts, plasma potential and Langmuir probe measurements were performed in the near-field plume of the NASA-300M Hall thruster. A probe array consisting of a Faraday probe, Langmuir probe, and emissive probe was used to interrogate the plume from approximately 0.1 - 2.0 mean thruster diameters downstream of the thruster exit plane at four operating conditions: 300 V, 400 V, and 500 V at 20 kW as well as 300 V at 10 kW. Results show that the acceleration zone and high-temperature region were contained within 0.3 mean thruster diameters from the exit plane at all operating conditions. Isothermal lines were shown to strongly follow magnetic field lines in the near-field, with maximum temperatures ranging from 19 - 27 eV. The electron temperature spatial distribution created large drops in measured floating potentials in front of the magnetic pole surfaces where the plasma density was low, which suggests strong sheaths at these surfaces. The data taken have provided valuable information for future design and modeling validation, and complements ongoing internal measurement efforts on the NASA-300M.

  6. The fixed-bias Langmuir probe on the Communication/Navigation Outage Forecast System satellite: calibration and validation.

    Science.gov (United States)

    Klenzing, J; Rowland, D

    2012-11-01

    A fixed-bias spherical Langmuir probe is included as part of the Vector Electric Field Instrument (VEFI) suite on the Communication/Navigation Outage Forecast System (C/NOFS) satellite. C/NOFS gathers data in the equatorial ionosphere between 400 and 860 km, where the primary constituent ions are H(+) and O(+). The ion current collected by the probe surface per unit plasma density is found to be a strong function of ion composition. The calibration of the collected current to an absolute density is discussed, and the performance of the spherical probe is compared to other in situ instruments on board the C/NOFS satellite. The application of the calibration is discussed with respect to future fixed-bias probes; in particular, it is demonstrated that some density fluctuations will be suppressed in the collected current if the plasma composition rapidly changes along with density. This is illustrated in the observation of plasma density enhancements on C/NOFS.

  7. The Fixed-Bias Langmuir Probe on the Communication-Navigation Outage Forecast System Satellite: Calibration and Validation

    Science.gov (United States)

    Klenzing, J.; Rowland, D.

    2012-01-01

    A fixed-bias spherical Langmuir probe is included as part of the Vector Electric Field Instrument (VEFI) suite on the Communication Navigation Outage Forecast System (CNOFS) satellite.CNOFS gathers data in the equatorial ionosphere between 400 and 860 km, where the primary constituent ions are H+ and O+. The ion current collected by the probe surface per unit plasma density is found to be a strong function of ion composition. The calibration of the collected current to an absolute density is discussed, and the performance of the spherical probe is compared to other in situ instruments on board the CNOFS satellite. The application of the calibration is discussed with respect to future fixed-bias probes; in particular, it is demonstrated that some density fluctuations will be suppressed in the collected current if the plasma composition rapidly changes along with density. This is illustrated in the observation of plasma density enhancements on CNOFS.

  8. Interfacial Water Structure in Langmuir Monolayer and Gibbs Layer Probed by Sum Frequency Generation Vibrational Spectroscopy

    Institute of Scientific and Technical Information of China (English)

    张贞; 郭源

    2012-01-01

    Langmuir monolayer and Gibbs layer exhibit surface-active properties and it can be used as simple model systems to investigate the physicochemical properties of biological membranes. In this report, we presented the OH stretching vibration of H2O in the 4"-n-pentyl-4-cyano-p-terphenyl (5CT), nonadecanenitrile (C18CN) Langmuir monolayer and compared them with CH3CN Gibbs layer at the air/water interface with polarization SFG-VS. This study demonstrated that the hydrogen bond network is different in the Langmuir monolayer of 5CT, C18CN from CH3CN Gibbs layer at the air/water interface which showed two different water structures on the different surface layer. The results provided a deeper insight into understanding the hydrogen bond on the interfaces.

  9. Development of a novel sweeping Langmuir probe instrument for monitoring the upper ionosphere on board a pico-satellite

    Science.gov (United States)

    Ranvier, Sylvain; De Keyser, Johan; Cardoen, Pepijn; Pieroux, Didier

    2014-05-01

    A novel Langmuir probe instrument, which will fly on board the Pico-Satellite for Atmospheric and Space Science Observations (PICASSO), is under development at the Belgian Institute for Space Aeronomy. PICASSO was initiated to join the QB50 project as scientific in-orbit demonstrator. The sweeping Langmuir probe (SLP) instrument is designed to measure both plasma density and electron temperature at an altitude varying from about 400 km up to 700 km from a high inclination orbit. Therefore, the plasma density is expected to fluctuate over a wide range, from about 1e6/m³ at high latitude and high altitude up to 1e12/m³ at low/mid latitude and low altitude. The electron temperature is expected to lie between approximately 1000 K and 3000 K. Given the high inclination of the orbit, the SLP instrument will allow a global monitoring of the ionosphere with a maximum spatial resolution of the order of 150 m. The main goals are to study 1) the ionosphere-plasmasphere coupling, 2) the subauroral ionosphere and corresponding magnetospheric features, 3) auroral structures, 4) polar caps, and 5) ionospheric dynamics via coordinated observations with EISCAT's heating radar. To achieve the scientific objectives described above, the instrument includes four thin cylindrical probes whose electrical potential is swept in such a way that both plasma density and electron temperature can be derived. In addition, since at least two probes will be out of the spacecraft's wake at any given time, differential measurements can be performed to increase the accuracy. Along the orbit, the Debye length is expected to vary from a few millimetres up to a few meters. Due to the tight constraints in terms of mass and volume inherent to pico-satellites, the use of long booms, which would guarantee that the probes are outside the sheath of the spacecraft (several Debye lengths away), is not possible. Consequently, the probes might be in the sheath of the spacecraft in polar regions. Extensive

  10. A new compact and low cost Langmuir Probe and associated onboard data handling system for CubeSat

    Science.gov (United States)

    Muralikrishna, Polinaya; Domingos, Sinval; Paredes, Andres; Abrahão Dos Santos, Walter

    2016-07-01

    A new compact and low cost Langmuir Probe and associated onboard data handling system are being developed at Instituto Nacional de Pesquisas Espaciais for launching on board one of the future 2U CubeSat missions. The system is a simplified and compacted version of the Langmuir Probe payloads launched on board several Brazilian SONDA III rockets and also developed for the Brazilian scientific satellites SACI-1 and SACI-2. The onboard data handling system will have the dual functions of preprocessing the data collected by the Langmuir Probe and acting as the interface between the experiment and the on board computer. The Langmuir Probe sensor in the form of two rectangular stainless steel strips of total surface area of approximately 80cm2 will be deployed soon after the injection of the CubeSat into orbit. A sweep voltage varying linearly from 0V to 3.0V in about 1.5 seconds and then remaining fixed at 3.0V for 1 second will be applied to the LP sensor to obtain both the electron density and electron temperature. A high sensitivity preamplifier will be used to convert the sensor current expected to be in the range of a few nano amperes to a few micro amperes into a varying potential. In order to cover the large dynamic range of the expected sensor current the preamplifier output will be further amplified by a logarithmic amplifier before being sampled and sent to the data handling system. The data handling system is projected to handle 8 analog channels and 4 digital words of 8 bits each. The incoming data will be stored in a RAM and later sent to the on board computer using a serial RS422 communication protocol. The interface unit will process the telecommands received from the on board computer. The interface is also projected to do FFT analysis of the LP sensor data and send the averaged FFT spectral amplitudes in place of the original unprocessed data. The system details are presented here.

  11. Edge turbulence measurement in Heliotron J using a combination of hybrid probe system and fast cameras

    Energy Technology Data Exchange (ETDEWEB)

    Nishino, N., E-mail: nishino@hiroshima-u.ac.jp [Graduate School of Engineering, Hiroshima University, Higashi-Hiroshima (Japan); Zang, L. [Kyoto University, Gokasho, Uji, Kyoto (Japan); Takeuchi, M. [JAEA, Naka, Ibaraki (Japan); Mizuuchi, T.; Ohshima, S. [Institute of Advanced Energy, Kyoto University, Gokasho, Uji, Kyoto 611-0011 (Japan); Kasajima, K.; Sha, M. [Kyoto University, Gokasho, Uji, Kyoto (Japan); Mukai, K. [NIFS, Toki, Gifu (Japan); Lee, H.Y. [Kyoto University, Gokasho, Uji, Kyoto (Japan); Nagasaki, K.; Okada, H.; Minami, T.; Kobayashi, S.; Yamamoto, S.; Konoshima, S.; Nakamura, Y.; Sano, F. [Institute of Advanced Energy, Kyoto University, Gokasho, Uji, Kyoto 611-0011 (Japan)

    2013-07-15

    The hybrid probe system (a combination of Langmuir probes and magnetic probes), fast camera and gas puffing system were installed at the same toroidal section to study edge plasma turbulence/fluctuation in Heliotron J, especially blob (intermittent filament). Fast camera views the location of the probe head, so that the probe system yields the time evolution of the turbulence/fluctuation while the camera images the spatial profile. Gas puff at the same toroidal section was used to control the plasma density and simultaneous gas puff imaging technique. Using this combined system the filamentary structure associated with magnetic fluctuation was found in Heliotron J at the first time. The other kind of fluctuation was also observed at another experiment. This combination measurement enables us to distinguish MHD activity and electro-static activity.

  12. An improved model to analyze Langmuir probe assisted photo-detachment signal for measuring electronegative plasma parameters

    Science.gov (United States)

    Sirse, Nishant; Oudini, Noureddine; Bendib, Abderrezeg; Ellingboe, Albert R.

    2016-09-01

    A diagnostic technique for measuring negative ion parameters based on Langmuir probe assisted laser photo-detachment relies on a theoretical model which relates the rise in the electron saturation current to electronegativity in the plasma. The existing model depend on various assumptions and neglect electrostatic potential barrier formed between the laser column (electropositive column) and the surrounding electronegative plasma in order to prevent the outward flow of electrons from the electropositive plasma column. These assumptions leads to erroneous estimation of the plasma electronegativity. In the present work, we present an analytical model to analyze Langmuir probe assisted photo-detachment signal in order to improve the accuracy of measured electronegativity and extended this technique for measuring electron temperature and charged species density. The analytical model is validated using both experiments and particle-in-cell simulation. The results shows improved accuracy in the measured parameters when compared to existing model. This work was supported by the Korea Institute for the Advancement of Technology and Ministry of Knowledge Economy (L-2010-1438-000), Republic of Korea, Enterprise Ireland and the European Regional Development Fund (ERDF) under NSRF 2007-2013.

  13. Langmuir-magnetic probe measurements of ELMs and dithering cycles in the EAST tokamak

    DEFF Research Database (Denmark)

    Yan, Ning; Naulin, Volker; Xu, G. S.

    2014-01-01

    Measurements of the dynamical behavior associated with edge localized modes (ELMs) have been carried out in the Experimental Advanced Superconducting Tokamak (EAST) by direct probing near the separatrix and far scrape-off layer (SOL) using electrostatic as well as magnetic probes. Type-III ELMs...

  14. PICASSO-SLP: a Langmuir probe instrument for monitoring the upper ionosphere on board a pico-satellite

    Science.gov (United States)

    Ranvier, Sylvain; Anciaux, Michel; Cardoen, Pepijn; Gamby, Emmanuel; Bonnewijn, Sabrina; De Keyser, Johan; Echim, Marius; Pieroux, Didier

    2016-04-01

    A novel Langmuir probe instrument, which will fly on board the Pico-Satellite for Atmospheric and Space Science Observations (PICASSO), is under development at the Royal Belgian Institute for Space Aeronomy. PICASSO, an ESA in-orbit demonstrator, is a triple unit CubeSat of dimensions 340.5x100x100 mm. The sweeping Langmuir probe (SLP) instrument, which includes four thin cylindrical probes whose electrical potential is swept, is designed to measure both plasma density and electron temperature at an altitude varying from about 400 km up to 700 km from a high inclination orbit. Therefore, the plasma density is expected to fluctuate over a wide range, from about 1e8/m³ at high latitude and high altitude up to several times 1e12/m³ at low/mid latitude and low altitude. The electron temperature is expected to lie between approximately 1.000 K and 10.000 K. Given the high inclination of the orbit, the SLP instrument will allow a global monitoring of the ionosphere with a maximum spatial resolution of the order of 150 m for the electron density and temperature, and up to a few meters for electron density only. The main goals are to study 1) the ionosphere-plasmasphere coupling, 2) the subauroral ionosphere and corresponding magnetospheric features, 3) auroral structures, 4) polar caps, 5) for the density, the multi-scale behaviour, spectral properties and turbulence of processes typical for the auroral regions, and 6) ionospheric dynamics via coordinated observations with EISCAT's heating radar. Along the orbit, the Debye length is expected to vary from a few millimetres up to a few meters. Due to the tight constraints in terms of mass and volume inherent to pico-satellites, the use of long booms, which would guarantee that the probes are outside the sheath of the spacecraft (several Debye lengths away), is not possible. Consequently, the probes might be in the sheath of the spacecraft in polar regions. Extensive modelling and simulations of the sheath effects on the

  15. High enzymatic activity preservation with carbon nanotubes incorporated in urease-lipid hybrid Langmuir-Blodgett films.

    Science.gov (United States)

    Caseli, Luciano; Siqueira, José Roberto

    2012-03-27

    The search for optimized architectures, such as thin films, for the production of biosensors has been challenged in recent decades, and thus, the understanding of molecular interactions that occur at interfaces is essential to improve the construction of nanostructured devices. In this study, we investigated the possibility of using carbon nanotubes in hybrid Langmuir-Blodgett (LB) films of lipids and urease to improve the catalytic performance of the immobilized enzyme. The molecular interactions were first investigated at the air-water interface with the enzyme adsorbed from the aqueous subphase onto Langmuir monolayers of dimyristoylphosphatidic acid (DMPA). The transfer to solid supports as LB films and the subsequent incorporation of carbon nanotubes in the hybrid film permitted us to evaluate how these nanomaterials changed the physical properties of the ultrathin film. Colorimetric measurments indicated that the presence of nanotubes preserved and enhanced the enzyme activity of the film, even after 1 month. These results show that the use of such hybrid films is promising for the development of biosensors with an optimized performance.

  16. Multi-pin Langmuir probe measurement for identification of blob propagation characteristics in the Large Helical Device

    Energy Technology Data Exchange (ETDEWEB)

    Tanaka, H., E-mail: tanaka.hirohiko@lhd.nifs.ac.jp [National Institute for Fusion Science, Toki 509-5292 (Japan); Masuzaki, S. [National Institute for Fusion Science, Toki 509-5292 (Japan); Ohno, N. [Graduate School of Engineering, Nagoya University, Nagoya, Aichi 464-8603 (Japan); Morisaki, T. [National Institute for Fusion Science, Toki 509-5292 (Japan); Tsuji, Y. [Graduate School of Engineering, Nagoya University, Nagoya, Aichi 464-8603 (Japan)

    2015-08-15

    In order to investigate the blobby plasma transport in the Large Helical Device, we have measured electrostatic fluctuations around the divertor leg by using a newly-designed multi-pin reciprocating Langmuir probe. Near the low-field side edge of the divertor leg, positive spikes of ion saturation current fluctuation were observed. In addition, the electric field which correlates with the ion saturation current fluctuation was firstly evaluated with the neighboring floating potential measurement. Considering the positional relationship with the magnetic geometry, the identified direction of the electric field inside the blobs is consistent with the theoretically predicted E × B motion. By applying the conditional averaging method, a quantitative speed of the blobs was preliminary estimated.

  17. Probing Compositional Variation within Hybrid Nanostructures

    Energy Technology Data Exchange (ETDEWEB)

    Yuhas, Benjamin D.; Habas, Susan E.; Fakra, Sirine C.; Mokari, Taleb

    2010-06-22

    We present a detailed analysis of the structural and magnetic properties of solution-grown PtCo-CdS hybrid structures in comparison to similar free-standing PtCo alloy nanoparticles. X-ray absorption spectroscopy is utilized as a sensitive probe for identifying subtle differences in the structure of the hybrid materials. We found that the growth of bimetallic tips on a CdS nanorod substrate leads to a more complex nanoparticle structure composed of a PtCo alloy core and thin CoO shell. The core-shell architecture is an unexpected consequence of the different nanoparticle growth mechanism on the nanorod tip, as compared to free growth in solution. Magnetic measurements indicate that the PtCo-CdS hybrid structures are superparamagnetic despite the presence of a CoO shell. The use of X-ray spectroscopic techniques to detect minute differences in atomic structure and bonding in complex nanosystems makes it possible to better understand and predict catalytic or magnetic properties for nanoscale bimetallic hybrid materials.

  18. Measurement of Electron Density Using the Multipole Resonance Probe, Langmuir Probe and Optical Emission Spectroscopy in Low Pressure Plasmas with Different Electron Energy Distribution Functions

    Science.gov (United States)

    Oberberg, Moritz; Bibinov, Nikita; Ries, Stefan; Awakowicz, Peter; Institute of Electrical Engineering; Plasma Technology Team

    2016-09-01

    In recently publication, the young diagnostic tool Multipole Resonance Probe (MRP) for electron density measurements was introduced. It is based on active plasma resonance spectroscopy (APRS). The probe was simulated und evaluated for different devices. The geometrical and electrical symmetry simplifies the APRS model, so that the electron density can be easily calculated from the measured resonance. In this work, low pressure nitrogen mixture plasmas with different electron energy distribution functions (EEDF) are investigated. The results of the MRP measurement are compared with measurements of a Langmuir Probe (LP) and Optical Emission Spectroscopy (OES). Probes and OES measure in different regimes of kinetic electron energy. Both probes measure electrons with low kinetic energy (<10 eV), whereas the OES is influenced by electrons with high kinetic energy which are needed for transitions of molecule bands. By the determination of the absolute intensity of N2(C-B) and N2+(B-X)electron temperature and density can be calculated. In a non-maxwellian plasma, all plasma diagnostics need to be combined.

  19. Measurement of electron temperatures of Argon Plasmas in a High-Density Inductively-Coupled Remote Plasma System by Langmuir Probe and Optical-Emission Spectroscopy

    NARCIS (Netherlands)

    Boogaard, A.; Kovalgin, Alexeij Y.; Aarnink, Antonius A.I.; Wolters, Robertus A.M.; Holleman, J.; Brunets, I.; Schmitz, Jurriaan

    2006-01-01

    We measured electron density and electron energy distribution function (EEDF) in our reactor by a Langmuir probe. The EEDF of Ar plasma in the reactor could largely be described by the Maxwell-Boltzmann distribution function, but it also contained a fraction (~10-3) of electrons which were much

  20. Predictions of VRF on a Langmuir Probe under the RF Heating Spiral on the Divertor Floor on NSTX-U

    Energy Technology Data Exchange (ETDEWEB)

    Hosea, J C [PPPL; Perkins, R J [PPPL; Jaworski, M A [PPPL; Kramer, G J [PPPL; Ahn, J-W [ORNL

    2014-07-01

    RF heating deposition spirals are observed on the divertor plates on NSTX as shown in for a NB plus RF heating case. It has been shown that the RF spiral is tracked quite well by the spiral mapping of the strike points on the divertor plate of magnetic field lines passing in front of the high harmonic fast wave (HHFW) antenna on NSTX. Indeed, both current instrumented tiles and Langmuir probes respond to the spiral when it is positioned over them. In particular, a positive increment in tile current (collection of electrons) is obtained when the spiral is over the tile. This current can be due to RF rectification and/or RF heating of the scrape off layer (SOL) plasma along the magnetic field lines passing in front of the the HHFW antenna. It is important to determine quantitatively the relative contributions of these processes. Here we explore the properties of the characteristics of probes on the lower divertor plate to determine the likelyhood that the primary cause of the RF heat deposition is RF rectification.

  1. Application of an RF Biased Langmuir Probe to Etch Reactor Chamber Matching, Fault Detection and Process Control

    Science.gov (United States)

    Keil, Douglas; Booth, Jean-Paul; Benjamin, Neil; Thorgrimsson, Chris; Brooks, Mitchell; Nagai, Mikio; Albarede, Luc; Kim, Jung

    2008-10-01

    Semiconductor device manufacturing typically occurs in an environment of both increasing equipment costs and per unit sale price shrinkage. Profitability in such a conflicted economic environment depends critically on yield, throughput and cost-of-ownership. This has resulted in increasing interest in improved fault detection, process diagnosis, and advanced process control. Achieving advances in these areas requires an integrated understanding of the basic physical principles driving the processes of interest and the realities of commercial manufacturing. Following this trend, this work examines the usefulness of an RF-biased planar Langmuir probe^1. This method delivers precise real-time (10 Hz) measurements of ion flux and tail weighted electron temperature. However, it is also mechanically non-intrusive, reliable and insensitive to contamination and deposition on the probe. Since the measured parameters are closely related to physical processes occurring at the wafer-plasma interface, significant improvements in process control, chamber matching and fault detection are achieved. Examples illustrating the improvements possible will be given. ^1J.P. Booth, N. St. J. Braithwaite, A. Goodyear and P. Barroy, Rev.Sci.Inst., Vol.71, No.7, July 2000, pgs. 2722-2727.

  2. Plasma characterization of the superconducting proton linear accelerator plasma generator using a 2 MHz compensated Langmuir probe.

    Science.gov (United States)

    Schmitzer, C; Kronberger, M; Lettry, J; Sanchez-Arias, J; Störi, H

    2012-02-01

    The CERN study for a superconducting proton Linac (SPL) investigates the design of a pulsed 5 GeV Linac operating at 50 Hz. As a first step towards a future SPL H(-) volume ion source, a plasma generator capable of operating at Linac4 or nominal SPL settings has been developed and operated at a dedicated test stand. The hydrogen plasma is heated by an inductively coupled RF discharge e(-) and ions are confined by a magnetic multipole cusp field similar to the currently commissioned Linac4 H(-) ion source. Time-resolved measurements of the plasma potential, temperature, and electron energy distribution function obtained by means of a RF compensated Langmuir probe along the axis of the plasma generator are presented. The influence of the main tuning parameters, such as RF power and frequency and the timing scheme is discussed with the aim to correlate them to optimum H(-) ion beam parameters measured on an ion source test stand. The effects of hydrogen injection settings which allow operation at 50 Hz repetition rate are discussed.

  3. A measurement of the TPMU - PROBA II Microsatellite Instrument and its comparison with the SWARM Langmuir Probes results

    Science.gov (United States)

    Podolska, Katerina; Hruska, Frantisek; Truhlik, Vladimir

    2016-04-01

    This contribution deals with the long-term measurement of the floating potential (FP) and the electron temperature (Te) provided by the Thermal Plasma Measurement Unit (TPMU) scientific instrument on-board the PROBA II microsatellite. The device is working with limitations of scientific measurements caused very probably by installed on-board software. This brings lower data volume as it was planned. Affected are the ion measurement and partially the electron temperature measurement. We present comparisons of the TPMU long-term measurement of the FP and the Te with the Te and the FP SWARM Langmuir Probes measured data. We implement the method of stochastic comparison of the probability distribution between measurements of FP and Te of both instruments to recognize seasonal and solar activity similarities. The analysis is performed for all seasons of the period from the years 2013 - 2015 for the Equatorial region, North and South hemisphere. The data are divided into the three groups by the geographical latitude to the Nothern hemisphere (lat>15'), the Southern hemisphere (latreflect also changes of the Kp index. Changes over the solar cycle are also visible. The main TPMU goal is the validation and testing of new design of the instrument which is necessary for possible applications of TPMU design for future scientific missions.

  4. Langmuir Probe Measurements of Inductively Coupled CHF3/Ar and Ar/CHF3/O2 Plasmas

    Science.gov (United States)

    Sharma, S. P.; Rao, M. V. V. S.; Meyyappan, M.

    2000-01-01

    Plasma parameters, such as, electron number density (ne), electron temperature (Te), y electron energy distribution function (EEDF), mean electron energy (Ee), ion number density (ni), and plasma potential (Vp), have been measured by using Langmuir probe in low-pressure (10-50 mTorr) inductively coupled CHF3/Ar and CHF3/Ar/O2 plasmas generated in the GEC cell. The measurements were made at the center of the plasma, keeping the lower electrode grounded, for various CHF3/Ar and Ar/CHF3/O2 mixtures operating at 10-50 mTorr pressures and two input RF power levels, 200 and 300 W. EEDF data show a strong Druyvesteyn distribution with relatively lower number of low energy electrons as compared to a Maxwell distribution and a large electron population with energies higher than the plasma potential. The results further show that at low CHF3 concentrations (less than 50%) the electron number density remains nearly constant with increase in pressure. At higher CHF3 concentrations, however, it decreases with increase in pressure. Plasma potential and electron temperature increase with decrease in pressure and with increase in CHF3 concentration. An analysis of the above observations and mechanisms will be presented.

  5. Progress on Langmuir Probe, Data Analysis, Acquisition and Optimization Innovations at the Coast Guard Academy Plasma Lab (CGAPL)

    Science.gov (United States)

    Wright, Erin; Frank, John; Azzari, Phil; James, Royce; Hopson, Jordan; Duke-Tinson, Omar; Paolino, Richard; Sandi, Eva; Sherman, Justin; Turk, Jeremy

    2016-10-01

    CGAPL houses four major plasma experiments that span large temperature, density, energy and functionality regimes. Often automation and remote operation of intelligent devices are required in adverse operating environments for digital and analogue systems. Plasma data collected by a multitude of diagnostics and sensors (to include Langmuir probes) over long timescales mandates CGAPL's 40-channel Data Acquisition (DAQ) system that collects and stores data plus controls CGAPL. The ability to remotely control and operate lab diagnostics then collect and store data through a LabView collective Graphic User Interface (GUI) currently under construction, enable users to remotely control, collect, and store CGAPL experimental data. Innovative solutions to optimize data collection and apparatus command and control, will enhance the ability to run experiments remotely, improve the validity of results, and advance participation in fusion grade diagnostic development. Instrument automation, optimization, and data collection obstacles, solutions, and procedures will be reported. Supported by U.S. DEPS Grant [HEL-JTO] PRWJFY15-16.

  6. Estimation of Al2O3 critical temperature using a Langmuir probe in laser ablation

    Science.gov (United States)

    Yahiaoui, K.; Abdelli-Messaci, S.; Messaoud Aberkane, S.; Kellou, A.

    2016-11-01

    Pulsed laser deposition (PLD) has demonstrated its capacity in thin films growing under the moderate laser intensity. But when the laser intensity increases, the presence of droplets on the thin film limits the PLD efficiency such that the process needs an optimization study. In this way, an experimental study has been conducted in order to correlate between the appearance of those droplets and the laser fluence. The comprehension of the physical mechanism during ablation and the control of the deposition parameters allowed to get a safe process. Our experiment consists in measuring the amount of ejected matter from polycrystalline alumina target as a function of the laser fluence when irradiated by a KrF laser. According to laser fluence, several kinds of ablation regimes have been identified. Below a threshold value found as 12 J/cm2, the mechanism of ablation was assigned to normal evaporation, desorption and nonthermal processes. While above this threshold value, the mechanism of ablation was assigned to phase explosion phenomenon which is responsible of droplets formation when the surface temperature approaches the critical temperature T tc. A negative charge collector was used to collect the positive ions in the plume. Their times of flight (TOF) signal were used to estimate the appropriate T tc for alumina target. Ions yield, current as well as kinetic energy were deduced from the TOF signal. Their evolutions show the occurrence of an optical breakdown in the vapor plume which is well correlated with the onset of the phase explosion phenomenon. At 10 J/cm2, the ions velocities collected by the probe have been compared to those obtained from optical emission spectroscopy diagnostic and were discussed. To prove the occurrence of phase explosion by the appearance of droplets, several thin films were elaborated on Si (100) substrate at different laser fluence into vacuum. They have been characterized by scanning electron microscope. The results were well

  7. Langmuir probes for SPIDER (Source for the production of Ions of Deuterium Extracted from Radio Frequency plasma) experiment: tests in BATMAN (BAvarian Test Machine for Negative ions).

    Science.gov (United States)

    Brombin, M; Spolaore, M; Serianni, G; Pomaro, N; Taliercio, C; Dalla Palma, M; Pasqualotto, R; Schiesko, L

    2014-11-01

    A prototype system of the Langmuir probes for SPIDER (Source for the production of Ions of Deuterium Extracted from RF plasma) was manufactured and experimentally qualified. The diagnostic was operated in RF (Radio Frequency) plasmas with cesium evaporation on the BATMAN (BAvarian Test MAchine for Negative ions) test facility, which can provide plasma conditions as expected in the SPIDER source. A RF passive compensation circuit was realised to operate the Langmuir probes in RF plasmas. The sensors' holder, designed to better simulate the bias plate conditions in SPIDER, was exposed to a severe experimental campaign in BATMAN with cesium evaporation. No detrimental effect on the diagnostic due to cesium evaporation was found during the exposure to the BATMAN plasma and in particular the insulation of the electrodes was preserved. The paper presents the system prototype, the RF compensation circuit, the acquisition system (as foreseen in SPIDER), and the results obtained during the experimental campaigns.

  8. Langmuir probes for SPIDER (source for the production of ions of deuterium extracted from radio frequency plasma) experiment: Tests in BATMAN (Bavarian test machine for negative ions)

    Energy Technology Data Exchange (ETDEWEB)

    Brombin, M., E-mail: matteo.brombin@igi.cnr.it; Spolaore, M.; Serianni, G.; Pomaro, N.; Taliercio, C.; Palma, M. Dalla; Pasqualotto, R. [Consorzio RFX, Corso Stati Uniti 4, I-35127 Padova (Italy); Schiesko, L. [Max-Planck-Institut für Plasmaphysik, Boltzmannstr. 2, 85748 Garching (Germany)

    2014-11-15

    A prototype system of the Langmuir probes for SPIDER (Source for the production of Ions of Deuterium Extracted from RF plasma) was manufactured and experimentally qualified. The diagnostic was operated in RF (Radio Frequency) plasmas with cesium evaporation on the BATMAN (BAvarian Test MAchine for Negative ions) test facility, which can provide plasma conditions as expected in the SPIDER source. A RF passive compensation circuit was realised to operate the Langmuir probes in RF plasmas. The sensors’ holder, designed to better simulate the bias plate conditions in SPIDER, was exposed to a severe experimental campaign in BATMAN with cesium evaporation. No detrimental effect on the diagnostic due to cesium evaporation was found during the exposure to the BATMAN plasma and in particular the insulation of the electrodes was preserved. The paper presents the system prototype, the RF compensation circuit, the acquisition system (as foreseen in SPIDER), and the results obtained during the experimental campaigns.

  9. Langmuir probes for SPIDER (source for the production of ions of deuterium extracted from radio frequency plasma) experiment: Tests in BATMAN (Bavarian test machine for negative ions)

    Science.gov (United States)

    Brombin, M.; Spolaore, M.; Serianni, G.; Pomaro, N.; Taliercio, C.; Palma, M. Dalla; Pasqualotto, R.; Schiesko, L.

    2014-11-01

    A prototype system of the Langmuir probes for SPIDER (Source for the production of Ions of Deuterium Extracted from RF plasma) was manufactured and experimentally qualified. The diagnostic was operated in RF (Radio Frequency) plasmas with cesium evaporation on the BATMAN (BAvarian Test MAchine for Negative ions) test facility, which can provide plasma conditions as expected in the SPIDER source. A RF passive compensation circuit was realised to operate the Langmuir probes in RF plasmas. The sensors' holder, designed to better simulate the bias plate conditions in SPIDER, was exposed to a severe experimental campaign in BATMAN with cesium evaporation. No detrimental effect on the diagnostic due to cesium evaporation was found during the exposure to the BATMAN plasma and in particular the insulation of the electrodes was preserved. The paper presents the system prototype, the RF compensation circuit, the acquisition system (as foreseen in SPIDER), and the results obtained during the experimental campaigns.

  10. Fluorescence In Situ Hybridization Probe Preparation.

    Science.gov (United States)

    Tolomeo, Doron; Stanyon, Roscoe R; Rocchi, Mariano

    2017-01-01

    The public human genome sequencing project utilized a hierarchical approach. A large number of BAC/PAC clones, with an insert size approximate from 50 kb to 300 kb, were identified and finely mapped with respect to the Sequence Tagged Site (STS) physical map and with respect to each other. A "golden path" of BACs, covering the entire human genome, was then selected and each clone was fully sequenced. The large number of remaining BACs was not fully sequenced, but the availability of the end sequence (~800-1000 bp) at each end allowed them to be very precisely mapped on the human genome.The search for copy number variations of the human genome used several strategies. One of these approaches took advantage of the fact that fosmid clones, contrary to BAC/PAC clones, have a fixed insert size (~40 kb) (Kidd et al., Nature 453: 56-64, 2008). In this context, the ends of ~7 million fosmid clones were sequenced, and therefore it was possible to precisely map these clones on the human genome.In summary, a large number of genomic clones (GC) are available for FISH experiments. They usually yield bright FISH signals and are extremely precious for molecular cytogenetics, and in particular cancer cytogenetics. The already-labeled probes available commercially are usually based on a combination of such GCs. The present chapter summarizes the protocols for extracting, labeling, and hybridization onto slides of DNA obtained from GC.

  11. Observed Coupling Between the International Space Station PCU Plasma and a FPMU Langmuir Probe Facilitated by the Geomagnetic Field

    Science.gov (United States)

    Hartman, William; Koontz, Steven L.

    2010-01-01

    Electrical charging of the International Space Station (ISS) is a matter of serious concern resulting from the possibility of vehicle arcing and electrical shock hazard to crew during extravehicular activity (EVA). A Plasma Contactor Unit (PCU) was developed and integrated into ISS in order to control the ISS floating potential, thereby, minimize vehicle charging and associated hazards. One of the principle factors affecting ISS electrical charging is the ionosphere plasma state (i.e., electron temperature and density). To support ISS electrical charging studies a Floating Potential Monitoring Unit (FPMU) is also integrated into ISS in order to measure the ionosphere properties using Langmuir probes (LP). The FPMU was located on the Starboard side of ISS. The PCU is located near the center of ISS with its plasma exhaust pointed to port. From its integration on ISS in 2006 through November of 2009, the FPMU data exhibited nominal characteristics during PCU operation. On November 21, 2009 the FPMU was relocated from the Starboard location to a new Port location. After relocation significant enhanced noise was observed in both the LP current-voltage sweeps and the derived electron temperature data. The enhanced noise only occurred when the PCU was in discharge and at unique and repeatable locations of the ISS orbit. The cause of this enhanced noise was investigated. It was found that there is coupling occurring between the PCU plasma and the FPMU LP. In this paper we shall 1) present the on-orbit data and the presence of enhanced noise, 2) demonstrate that the coupling of the PCU plasma and the FPMU measurements is geomagnetically organized, 3) show that coupling of the PCU plasma and the FPMU is primarily due to and driven by particle-wave interaction and 4) show that the ionosphere conditions are adequate for Alfven waves to be generated by the PCU plasma.

  12. Comparative analysis and approximations of space-charge formation in Langmuir probes with plane, cylindrical and spherical electrodes including temperature effects

    Energy Technology Data Exchange (ETDEWEB)

    Valdeblanquez, Eder [Departamento de Fisica, Facultad de IngenierIa, Universidad del Zulia, Apartado 4011- A 526, Maracaibo, Venezuela and Centro de Investigacion de Matematicas Aplicadas Facultad de IngenierIa, Universidad del Zulia, Apartado 10486, Maracaibo (Venezuela, Bolivarian Republic of)], E-mail: eder@luz.edu.ve

    2008-10-15

    In this paper the space-charge effects in Langmuir probes are compared for different kinds of symmetries: plane, cylindrical and spherical. A detailed analysis is performed here including temperature effects, and therefore kinetic theory is used instead of fluid equations as used by other authors. The nonlinear equations obtained here have been solved first by numerical computation and later by approximations using Bessel functions. The accuracy of each approximation is also discussed. Space-charge effects are more important in plane geometries than in the case of cylindrical or spherical symmetries.

  13. Laser-produced Sm{sub 1-x}Nd{sub x}NiO{sub 3} plasma dynamic through Langmuir probe and ICCD imaging combined analysis

    Energy Technology Data Exchange (ETDEWEB)

    Ngom, B.D. [Universite Cheikh Anta Diop de Dakar (UCAD), Laboratoire de Photonique et Nano-Fabrication, Groupe de Physique du Solide et Sciences des Materiaux (GPSSM), Faculte des Sciences et Techniques, Dakar-Fann Dakar (Senegal); University of South Africa, UNESCO-UNISA Africa Chair in Nanosciences/Nanotechnology, College of Graduate Studies, Pretoria (South Africa); National Research Foundation, Nanosciences African Network (NANOAFNET), iThemba LABS, Somerset West, Western Cape (South Africa); Lafane, S.; Abdelli-Messaci, S.; Kerdja, T. [Centre de Developpement des Technologies Avancees, Division des Milieux Ionises et Laser, Baba Hassen (Algeria); Maaza, M. [University of South Africa, UNESCO-UNISA Africa Chair in Nanosciences/Nanotechnology, College of Graduate Studies, Pretoria (South Africa); National Research Foundation, Nanosciences African Network (NANOAFNET), iThemba LABS, Somerset West, Western Cape (South Africa)

    2016-01-15

    The dynamics of laser-produced plasma of Sm{sub 1-x}Nd{sub x}NiO{sub 3} is studied over oxygen pressure ranging from vacuum up to 2 mbar via Langmuir probe, and intensified charge-coupled device-imaging techniques. The analysis of the oxygen pressure dependence of the ion yield points out to four different regimes. More accurately, the specific ionic current shows a first drop at about 2 x 10{sup -2} mbar corresponding to the appearance of two peaks in the profile of the ionic signal. Likewise, this pressure marks the early stage of the plume splitting into two prominent components as observed by the ICCD imaging. Below 2 x 10{sup -2} mbar, the dynamic of the plume is directive (1D), while a quasi-stable behavior on the ionic current signal is observed. In the 0.2- to 0.5-mbar region, a quasi-stationary regime is obtained. More accurately, both the ionic yield and the plume stopping distance vary very slowly in such pressures range. Above 0.5 mbar, the ionic yield is altered again corresponding to the appearance of the diffusion regime. At a pressure of 1.5 mbar we observe a second appearance of an ionic signal peak. A correlation between the results obtained by Langmuir probe and ICCD imaging is made, presented, and discussed within this contribution. (orig.)

  14. RNA probes, transcribed from synthetic DNA, for in situ hybridization

    Energy Technology Data Exchange (ETDEWEB)

    Brysch, W.; Hagendorff, G.; Schlingensiepen, K.H.

    1988-03-25

    Single stranded cRNA probes are ideal for in-situ-hybridization. Synthetic oligodesoxy-ribonucleotides on the other hand allow one to chose nucleotide sequences independently of restriction sites and availability of cloned templates. To combine the advantages of these two methods, the authors used an oligonucleotide, containing a T7-RNA-polymerase promotor sequence and a starting sequence of 6 bases as a template for an in-vitro-transcription reaction with T7-RNA-polymerase. A second oligonucleotide, complementary to basepairs 1-101 was also synthesized and the two strands heated to 95/sup 0/ for 3 min, then kept at 65/sup 0/C for one hour in 80 mM Tris, 12mM MgCl, 4 mM Spermidine, 0,04% Triton and finally cooled on ice. The resulting double stranded DNA was used as a template to transcribe /sup 35/S-labelled cRNA, using DNA, T7-Polymerase, /sup 35/S-UTP, ATP, GTP and CTP and RNasin (Promega). No difference could be observed comparing the resulting hybridization pattern with that obtained by using a plasmid derived cRNA probe of rat brain sodium channel II. Moreover the hybridization signal was clearly distinct from the background labelling resulting from hybridization with a sense control probe of the same specific activity.

  15. Langmuir Probe Measurements Within the Discharge Channel of the 20-kW NASA-300M and NASA-300MS Hall Thrusters

    Science.gov (United States)

    Shastry, Rohit; Huang, Wensheng; Haag, Thomas W.; Kamhawi, Hani

    2013-01-01

    NASA is presently developing a high-power, high-efficiency, long-lifetime Hall thruster for the Solar Electric Propulsion Technology Demonstration Mission. In support of this task, studies have been performed on the 20-kW NASA-300M Hall thruster to aid in the overall design process. The ability to incorporate magnetic shielding into a high-power Hall thruster was also investigated with the NASA- 300MS, a modified version of the NASA-300M. The inclusion of magnetic shielding would allow the thruster to push existing state-of-the-art technology in regards to service lifetime, one of the goals of the Technology Demonstration Mission. Langmuir probe measurements were taken within the discharge channels of both thrusters in order to characterize differences at higher power levels, as well as validate ongoing modeling efforts using the axisymmetric code Hall2De. Flush-mounted Langmuir probes were also used within the channel of the NASA-300MS to verify that magnetic shielding was successfully applied. Measurements taken from 300 V, 10 kW to 600 V, 20 kW have shown plasma potentials near anode potential and electron temperatures of 4 to 12 eV at the walls near the thruster exit plane of the NASA-300MS, verifying magnetic shielding and validating the design process at this power level. Channel centerline measurements on the NASA-300M from 300 V, 10 kW to 500 V, 20 kW show the electron temperature peak at approximately 0.1 to 0.2 channel lengths upstream of the exit plane, with magnitudes increasing with discharge voltage. The acceleration profiles appear to be centered about the exit plane with a width of approximately 0.3 to 0.4 channel lengths. Channel centerline measurements on the NASA-300MS were found to be more challenging due to additional probe heating. Ionization and acceleration zones appeared to move downstream on the NASA-300MS compared to the NASA-300M, as expected based on the shift in peak radial magnetic field. Additional measurements or alternative

  16. Deriving the characteristics of warm electrons (100-500 eV) in the magnetosphere of Saturn with the Cassini Langmuir probe

    Science.gov (United States)

    Garnier, P.; Holmberg, M. K. G.; Wahlund, J.-E.; Lewis, G. R.; Schippers, P.; Coates, A.; Gurnett, D. A.; Waite, J. H.; Dandouras, I.

    2014-12-01

    Though Langmuir probes (LP) are designed to investigate cold plasma regions (e.g. ionospheres), a recent analysis revealed a strong sensitivity of the Cassini LP measurements to hundreds of eV electrons. These warm electrons impact the surface of the probe and generate a significant current of secondary electrons, that impacts both the DC level and the slope of the current-voltage curve of the LP (for negative potentials) through energetic contributions that may be modeled with a reasonable precision. We show here how to derive information about the incident warm electrons from the analysis of these energetic contributions, in the regions where the cold plasma component is small with an average temperature in the range ~ [ 100 - 500 ] eV. First, modeling the energetic contributions (based on the incident electron flux given by a single anode of the CAPS spectrometer) allows us to provide information about the pitch angle anisotropies of the incident hundreds of eV electrons. The modeling reveals indeed sometimes a large variability of the estimated maximum secondary electron yield (which is a constant for a surface material) needed to reproduce the observations. Such dispersions give evidence for strong pitch angle anisotropies of the incident electrons, and using a functional form of the pitch angle distribution even allows us to derive the real peak angle of the distribution. Second, rough estimates of the total electron temperature may be derived in the regions where the warm electrons are dominant and thus strongly influence the LP observations, i.e. when the average electron temperature is in the range ~ [ 100 - 500 ] eV. These regions may be identified from the LP observations through large positive values of the current-voltage slope at negative potentials. The estimated temperature may then be used to derive the electron density in the same region, with estimated densities between ~ 0.1 and a few particles /cm3 (cc). The derived densities are in better

  17. Real-time control of divertor detachment in H-mode with impurity seeding using Langmuir probe feedback in JET-ITER-like wall

    Science.gov (United States)

    Guillemaut, C.; Lennholm, M.; Harrison, J.; Carvalho, I.; Valcarcel, D.; Felton, R.; Griph, S.; Hogben, C.; Lucock, R.; Matthews, G. F.; Perez Von Thun, C.; Pitts, R. A.; Wiesen, S.; contributors, JET

    2017-04-01

    Burning plasmas with 500 MW of fusion power on ITER will rely on partially detached divertor operation to keep target heat loads at manageable levels. Such divertor regimes will be maintained by a real-time control system using the seeding of radiative impurities like nitrogen (N), neon or argon as actuator and one or more diagnostic signals as sensors. Recently, real-time control of divertor detachment has been successfully achieved in Type I ELMy H-mode JET-ITER-like wall discharges by using saturation current (I sat) measurements from divertor Langmuir probes as feedback signals to control the level of N seeding. The degree of divertor detachment is calculated in real-time by comparing the outer target peak I sat measurements to the peak I sat value at the roll-over in order to control the opening of the N injection valve. Real-time control of detachment has been achieved in both fixed and swept strike point experiments. The system has been progressively improved and can now automatically drive the divertor conditions from attached through high recycling and roll-over down to a user-defined level of detachment. Such a demonstration is a successful proof of principle in the context of future operation on ITER which will be extensively equipped with divertor target probes.

  18. Numerical experiment to estimate the validity of negative ion diagnostic using photo-detachment combined with Langmuir probing

    Energy Technology Data Exchange (ETDEWEB)

    Oudini, N. [Laboratoire des plasmas de décharges, Centre de Développement des Technologies Avancées, Cité du 20 Aout BP 17 Baba Hassen, 16081 Algiers (Algeria); Sirse, N.; Ellingboe, A. R. [Plasma Research Laboratory, School of Physical Sciences and NCPST, Dublin City University, Dublin 9 (Ireland); Benallal, R. [Unité de Recherche Matériaux et Energies Renouvelables, BP 119, Université Abou Bekr Belkaïd, Tlemcen 13000 (Algeria); Taccogna, F. [Istituto di Metodologie Inorganiche e di Plasmi, CNR, via Amendola 122/D, 70126 Bari (Italy); Aanesland, A. [Laboratoire de Physique des Plasmas, (CNRS, Ecole Polytechnique, Sorbonne Universités, UPMC Univ Paris 06, Univ Paris-Sud), École Polytechnique, 91128 Palaiseau Cedex (France); Bendib, A. [Laboratoire d' Electronique Quantique, Faculté de Physique, USTHB, El Alia BP 32, Bab Ezzouar, 16111 Algiers (Algeria)

    2015-07-15

    This paper presents a critical assessment of the theory of photo-detachment diagnostic method used to probe the negative ion density and electronegativity α = n{sub -}/n{sub e}. In this method, a laser pulse is used to photo-detach all negative ions located within the electropositive channel (laser spot region). The negative ion density is estimated based on the assumption that the increase of the current collected by an electrostatic probe biased positively to the plasma is a result of only the creation of photo-detached electrons. In parallel, the background electron density and temperature are considered as constants during this diagnostics. While the numerical experiments performed here show that the background electron density and temperature increase due to the formation of an electrostatic potential barrier around the electropositive channel. The time scale of potential barrier rise is about 2 ns, which is comparable to the time required to completely photo-detach the negative ions in the electropositive channel (∼3 ns). We find that neglecting the effect of the potential barrier on the background plasma leads to an erroneous determination of the negative ion density. Moreover, the background electron velocity distribution function within the electropositive channel is not Maxwellian. This is due to the acceleration of these electrons through the electrostatic potential barrier. In this work, the validity of the photo-detachment diagnostic assumptions is questioned and our results illustrate the weakness of these assumptions.

  19. A novel fluorescent probe: europium complex hybridized T7 phage.

    Science.gov (United States)

    Liu, Chin-Mei; Jin, Qiaoling; Sutton, April; Chen, Liaohai

    2005-01-01

    We report on the creation of a novel fluorescent probe of europium-complex hybridized T7 phage. It was made by filling a ligand-displayed T7 ghost phage with a fluorescent europium complex particle. The structure of the hybridized phage, which contains a fluorescent inorganic core surrounded by a ligand-displayed capsid shell, was confirmed by electron microscope, energy-dispersive X-ray analysis (EDX), bioassays, and fluorescence spectrometer. More importantly, as a benefit of the phage display technology, the hybridized phage has the capability to integrate an affinity reagent against virtually any target molecules. The approach provides an original method to fluorescently "tag" a bioligand and/or to "biofunctionalize" a fluorophore particle. By using other types of materials such as radioactive or magnetic particles to fill the ghost phage, we envision that the hybridized phages represent a new class of fluorescent, magnetic, or radioprobes for imaging and bioassays and could be used both in vitro and in vivo.

  20. Observation of Lower Hybrid Current Drive Improved Confinement with a Graphite Probe at the Last Closed Flux Surface of the HT-7 Tokamak

    Institute of Scientific and Technical Information of China (English)

    徐国盛; 万宝年; 宋梅; 凌必利; 匡光力; 丁伯江

    2002-01-01

    High time resolution measurements of the electrostatic fluctuations, radial electric field Er and turbulence-induced electron flux Гe have been performed across the transition of lower hybrid current drive improved confinement with a graphite Langmuir probe array at the last closed flux surface of the HT-7 tokamak. The decrease of Гe is dominated by the suppression of fluctuation levels, which follows the change of Er. A reversal of the poloidal propagation direction of turbulence demonstrates that the poloidal propagation is dominated by Eт× Bφ drift. The enhancement of poloidal coherence accompanies the fluctuation suppression, which suggests the subtle variation of turbulence features.

  1. Mass Spectrometric and Langmuir Probe Measurements in Inductively Coupled Plasmas in Ar, CHF3/Ar and CHF3/Ar/O2 Mixtures

    Science.gov (United States)

    Kim, J. S.; Rao, M. V. V. S.; Cappelli, M. A.; Sharma, S. P.; Meyyappan, M.; Arnold, Jim (Technical Monitor)

    2000-01-01

    Absolute fluxes and energy distributions of ions in inductively coupled plasmas of Ar, CHF3/Ar, and CHF3/Ar/O2 have been measured. These plasmas were generated in a Gaseous Electronics Conference (GEC) cell modified for inductive coupling at pressures 10-50 mTorr and 100-300 W of 13.56 MHz radio frequency (RF) power in various feedgas mixtures. In pure Ar plasmas, the Ar(+) flux increases linearly with pressure as well as RF-power. Total ion flux in CHF3 mixtures decreases with increase in pressure and also CHF3 concentration. Relative ion fluxes observed in the present studies are analyzed with the help of available cross sections for electron impact ionization and charge-exchange ion-molecule reactions. Measurements of plasma potential, electron and ion number densities, electron energy distribution function, and mean electron energy have also been made in the center of the plasma with a RF compensated Langmuir probe. Plasma potential values are compared with the mean ion energies determined from the measured ion energy distributions and are consistent. Electron temperature, plasma potential, and mean ion energy vary inversely with pressure, but increase with CHF3 content in the mixture.

  2. Photoswitchable non-fluorescent thermochromic dye-nanoparticle hybrid probes

    Science.gov (United States)

    Harrington, Walter N.; Haji, Mwafaq R.; Galanzha, Ekaterina I.; Nedosekin, Dmitry A.; Nima, Zeid A.; Watanabe, Fumiya; Ghosh, Anindya; Biris, Alexandru S.; Zharov, Vladimir P.

    2016-11-01

    Photoswitchable fluorescent proteins with controllable light-dark states and spectral shifts in emission in response to light have led to breakthroughs in the study of cell biology. Nevertheless, conventional photoswitching is not applicable for weakly fluorescent proteins and requires UV light with low depth penetration in bio-tissue. Here we introduce a novel concept of photoswitchable hybrid probes consisting of thermochromic dye and absorbing nanoparticles, in which temperature-sensitive light-dark states and spectral shifts in absorption can be switched through controllable photothermal heating of doped nanoparticles. The proof-of-concept is demonstrated through the use of two different types of temperature-sensitive dyes doped with magnetic nanoparticles and reversibly photoswitched by a near-infrared laser. Photoacoustic imaging revealed the high contrast of these probes, which is sufficient for their visualization in cells and deep tissue. Our results suggest that these new photoswitchable multicolour probes can be used for multimodal cellular diagnostics and potentially for magnetic and photothermal therapy.

  3. Langmuir and Langmuir-Blodgett films revisited

    OpenAIRE

    2016-01-01

    A review on Langmuir and Langmuir-Blodgett films The Langmuir and Langmuir-Blodgett (LB) technique has been applied for a long time. It exist several books and reviews on the subject. Also, a big number of works and papers have been made. This work only intends to afford a revision of the subject under the point of view of the author, and centered mostly in new references.

  4. Dramatically improved RNA in situ hybridization signals using LNA-modified probes

    DEFF Research Database (Denmark)

    Thomsen, Rune; Nielsen, Peter Stein; Jensen, Torben Heick

    2005-01-01

    In situ detection of RNA by hybridization with complementary probes is a powerful technique. Probe design is a critical parameter in successful target detection. We have evaluated the efficiency of fluorescent DNA oligonucleotides modified to contain locked nucleic acid (LNA) residues. This incre......In situ detection of RNA by hybridization with complementary probes is a powerful technique. Probe design is a critical parameter in successful target detection. We have evaluated the efficiency of fluorescent DNA oligonucleotides modified to contain locked nucleic acid (LNA) residues....... This increases the thermal stability of hybrids formed with RNA. The LNA-based probes detect specific RNAs in fixed yeast cells with an efficiency far better than conventional DNA oligonucleotide probes of the same sequence. Using this probe design, we were also able to detect poly(A)+ RNA accumulation within...

  5. Real-time assays with molecular beacons and other fluorescent nucleic acid hybridization probes.

    Science.gov (United States)

    Marras, Salvatore A E; Tyagi, Sanjay; Kramer, Fred Russell

    2006-01-01

    A number of formats for nucleic acid hybridization have been developed to identify DNA and RNA sequences that are involved in cellular processes and that aid in the diagnosis of genetic and infectious diseases. The introduction of hybridization probes with interactive fluorophore pairs has enabled the development of homogeneous hybridization assays for the direct identification of nucleic acids. A change in the fluorescence of these probes indicates the presence of a target nucleic acid, and there is no need to separate unbound probes from hybridized probes. The advantages of homogeneous hybridization assays are their speed and simplicity. In addition, homogeneous assays can be combined with nucleic acid amplification, enabling the detection of rare target nucleic acids. These assays can be followed in real time, providing quantitative determination of target nucleic acids over a broad range of concentrations.

  6. Application of locked nucleic acid-based probes in fluorescence in situ hybridization

    DEFF Research Database (Denmark)

    Fontenete, Sílvia; Carvalho, Daniel R; Guimarães, Nuno

    2016-01-01

    Fluorescence in situ hybridization (FISH) employing nucleic acid mimics as probes is becoming an emerging molecular tool in the microbiology area for the detection and visualization of microorganisms. However, the impact that locked nucleic acid (LNA) and 2′-O-methyl (2′-OMe) RNA modifications have...... on the probe that is targeting microorganisms is unknown. In this study, the melting and hybridization efficiency properties of 18 different probes in regards to their use in FISH for the detection of the 16S rRNA of Helicobacter pylori were compared. For the same sequence and target, probe length and the type...

  7. Interactive fluorophore and quencher pairs for labeling fluorescent nucleic acid hybridization probes.

    Science.gov (United States)

    Marras, Salvatore A E

    2008-03-01

    The use of fluorescent nucleic acid hybridization probes that generate a fluorescence signal only when they bind to their target enables real-time monitoring of nucleic acid amplification assays. Real-time nucleic acid amplification assays markedly improves the ability to obtain qualitative and quantitative results. Furthermore, these assays can be carried out in sealed tubes, eliminating carryover contamination. Fluorescent nucleic acid hybridization probes are available in a wide range of different fluorophore and quencher pairs. Multiple hybridization probes, each designed for the detection of a different nucleic acid sequence and each labeled with a differently colored fluorophore, can be added to the same nucleic acid amplification reaction, enabling the development of high-throughput multiplex assays. In order to develop robust, highly sensitive and specific real-time nucleic acid amplification assays it is important to carefully select the fluorophore and quencher labels of hybridization probes. Selection criteria are based on the type of hybridization probe used in the assay, the number of targets to be detected, and the type of apparatus available to perform the assay. This article provides an overview of different aspects of choosing appropriate labels for the different types of fluorescent hybridization probes used with different types of spectrofluorometric thermal cyclers currently available.

  8. Surface density dependence of PCR amplicon hybridization on PNA/DNA probe layers

    DEFF Research Database (Denmark)

    Yao, Danfeng; Kim, Junyoung; Yu, Fang

    2005-01-01

    at an intermediate sodium concentration (approximately 100 mM). These effects were mainly ascribed to the electrostatic cross talk among the hybridized DNA molecules and the secondary structure of PCR amplicons. For the negatively charged DNA probes, the hybridization reaction was subjected additionally to the DNA...

  9. Dramatically improved RNA in situ hybridization signals using LNA-modified probes

    DEFF Research Database (Denmark)

    Thomsen, Rune; Nielsen, Peter Stein; Jensen, Torben Heick

    2005-01-01

    In situ detection of RNA by hybridization with complementary probes is a powerful technique. Probe design is a critical parameter in successful target detection. We have evaluated the efficiency of fluorescent DNA oligonucleotides modified to contain locked nucleic acid (LNA) residues. This incre...... the nucleus/ nucleolus of wild-type cells. LNA-based probes should be readily applicable to a diverse array of cells and tissue samples....

  10. Hybridization probe for femtomolar quantification of selected nucleic acid sequences on a disposable electrode.

    Science.gov (United States)

    Jenkins, Daniel M; Chami, Bilal; Kreuzer, Matthias; Presting, Gernot; Alvarez, Anne M; Liaw, Bor Yann

    2006-04-01

    Mixed monolayers of electroactive hybridization probes on gold surfaces of a disposable electrode were investigated as a technology for simple, sensitive, selective, and rapid gene identification. Hybridization to the ferrocene-labeled hairpin probes reproducibly diminished cyclic redox currents, presumably due to a displacement of the label from the electrode. Observed peak current densities were roughly 1000x greater than those observed in previous studies, such that results could easily be interpreted without the use of algorithms to correct for background polarization currents. Probes were sensitive to hybridization with a number of oligonucleotide sequences with varying homology, but target oligonucleotides could be distinguished from competing nontarget sequences based on unique "melting" profiles from the probe. Detection limits were demonstrated down to nearly 100 fM, which may be low enough to identify certain genetic conditions or infections without amplification. This technology has rich potential for use in field devices for gene identification as well as in gene microarrays.

  11. A simple and rapid method for the preparation of homologous DNA oligonucleotide hybridization probes from heterologous gene sequences and probes.

    Science.gov (United States)

    Maxwell, E S; Sarge, K D

    1988-11-30

    We describe a simple and rapid method for the preparation of homologous DNA oligonucleotide probes for hybridization analysis and/or cDNA/genomic library screening. With this method, a synthetic DNA oligonucleotide derived from a known heterologous DNA/RNA/protein sequence is annealed to an RNA preparation containing the gene transcript of interest. Any unpaired 3'-terminal oligonucleotides of the heterologous DNA primer are then removed using the 3' exonuclease activity of the DNA Polymerase I Klenow fragment before primer extension/dideoxynucleotide sequencing of the annealed RNA species with AMV reverse transcriptase. From the determined RNA sequence, a completely homologous DNA oligonucleotide probe is then prepared. This approach has been used to prepare a homologous DNA oligonucleotide probe for the successful library screening of the yeast hybRNA gene starting with a heterologous mouse hybRNA DNA oligonucleotide probe.

  12. A comparative hybridization analysis of yeast DNA with Paramecium parafusin- and different phosphoglucomutase-specific probes.

    Science.gov (United States)

    Wyroba, E; Satir, B H

    2000-01-01

    Molecular probes designed for the parafusin (PFUS), the Paramecium exocytic-sensitive phosphoglycoprotein, gave distinct hybridization patterns in Saccharomyces cerevisiae genomic DNA when compared with different phosphoglucomutase specific probes. These include two probes identical to segments of yeast phosphoglucomutase (PGM) genes 1 and 2. Neither of the PGM probes revealed the 7.4 and 5.9 kb fragments in Bgl II-cut yeast DNA digest detected with the 1.6 kb cloned PFUS cDNA and oligonucleotide constructed to the PFUS region (insertion 3--I-3) not found in other species. PCR amplification with PFUS-specific primers generated yeast DNA-species of the predicted molecular size which hybridized to the I-3 probe. A search of the yeast genome database produced an unassigned nucleotide sequence that showed 55% identity to parafusin gene and 37% identity to PGM2 (the major isoform of yeast phosphoglucomutase) within the amplified region.

  13. Probing hybrid modified gravity by stellar motion around Galactic Centre

    CERN Document Server

    Borka, D; Jovanović, P; Jovanović, V Borka

    2015-01-01

    We consider possible signatures for the so called {\\it hybrid gravity} within the Galactic Central Parsec. This modified theory of gravity consists of a superposition of the metric Einstein-Hilbert Lagrangian with an $f(R)$ term constructed {\\it \\`{a} la Palatini } and can be easily reduced to an equivalent scalar-tensor theory. The present analysis is based on the S2 star orbital precession around the massive compact dark object at the Galactic Centre where the simulated orbits in hybrid modified gravity are compared with astronomical observations. These simulations result with strong constraints on the range of hybrid gravity interaction parameter $\\phi_0$ and show that its most probable value, in the case of S2 star, is around -0.0009 to -0.0002. At the same time, we are also able to obtain reliable constrains on the effective mass parameter $m_{\\phi}$ of hybrid modified gravity. Its most probable value, in the case of S2 star, is around -0.0034 to -0.0025. Furthermore, the hybrid gravity potential induces...

  14. Fluoroscence in situ hybridization of chicken intestinal samples with bacterial rRNA targeted oligonucleotide probes

    DEFF Research Database (Denmark)

    Olsen, Katja Nyholm; Francesch, M.; Christensen, Henrik

    2006-01-01

    The objective was to develop a fast and accurate molecular method for the quantification of the intestinal flora in chickens by rRNA fluorescence in situ hybridization (FISH). Seven weeks old conventionally reared Lohmann hens were used to set up the method. To sample ileal intestinal content......, the distal part from Meckels diverticulum to the ileo-caecal junction was removed. Fixation was performed in ethanol and phosphate buffered saline. After washing by centrifugation, the sample was resuspended in pre-heated hybridization buffer with oligonucleotide probe labelled with Cy3 (10ng/µl). The cells...... were hybridized for 24-72h, centrifuged, washed with pre-heated hybridization buffer, centrifuged and resuspended in Millipore quality water before filtration onto a 0.22 µm black polycarbonate filter. The probes used in this study were, LGC354A, LGC354B, LGC354C, Strc493, Bacto1080, Sal3, Chis150, EUB...

  15. Brightness through Local Constraint-LNA-Enhanced FIT Hybridization Probes for In Vivo Ribonucleotide Particle Tracking

    DEFF Research Database (Denmark)

    Hövelmann, Felix; Gaspar, Imre; Loibl, Simon

    2014-01-01

    Imaging the dynamics of RNA in living cells is usually performed by means of transgenic approaches that require modification of RNA targets and cells. Fluorogenic hybridization probes would also allow the analysis of wild-type organisms. We developed nuclease-resistant DNA forced intercalation (FIT......) probes that combine the high enhancement of fluorescence upon hybridization with the high brightness required to allow tracking of individual ribonucleotide particles (RNPs). In our design, a single thiazole orange (TO) intercalator dye is linked as a nucleobase surrogate and an adjacent locked nucleic...

  16. Fiber-based hybrid probe for non-invasive cerebral monitoring in neonatology

    Science.gov (United States)

    Rehberger, Matthias; Giovannella, Martina; Pagliazzi, Marco; Weigel, Udo; Durduran, Turgut; Contini, Davide; Spinelli, Lorenzo; Pifferi, Antonio; Torricelli, Alessandro; Schmitt, Robert

    2015-07-01

    Improved cerebral monitoring systems are needed to prevent preterm infants from long-term cognitive and motor restrictions. Combining advanced near-infrared diffuse spectroscopy measurement technologies, time-resolved spectroscopy (TRS) and diffuse correlation spectroscopy (DCS) will introduce novel indicators of cerebral oxygen metabolism and blood flow for neonatology. For non-invasive sensing a fiber-optical probe is used to send and receive light from the infant head. In this study we introduce a new fiber-based hybrid probe that is designed for volume production. The probe supports TRS and DCS measurements in a cross geometry, thus both technologies gain information on the same region inside the tissue. The probe is highly miniaturized to perform cerebral measurements on heads of extreme preterm infants down to head diameters of 6cm. Considerations concerning probe production focus on a reproducible accuracy in shape and precise optical alignment. In this way deviations in measurement data within a series of probes should be minimized. In addition to that, requirements for clinical use like robustness and hygiene are considered. An additional soft-touching sleeve made of FDA compatible silicone allows for a flexible attachment with respect to the individual anatomy of each patient. We present the technical concept of the hybrid probe and corresponding manufacturing methods. A prototype of the probe is shown and tested on tissue phantoms as well as in vivo to verify its operational reliability.

  17. Phenylethynylpyrene excimer forming hybridization probes for fluorescence SNP detection

    DEFF Research Database (Denmark)

    Prokhorenko, Igor A.; Astakhova, Irina V.; Momynaliev, Kuvat T.

    2009-01-01

    Excimer formation is a unique feature of some fluorescent dyes (e.g., pyrene) which can be used for probing the proximity of biomolecules. Pyrene excimer fluorescence has previously been used for homogeneous detection of single nucleotide polymorphism (SNP) on DNA. 1-Phenylethynylpyrene (1-1-PEPy...

  18. In situ hybridization with labeled probes: assessment of african Swine Fever virus in formalin-fixed paraffin-embedded tissues.

    Science.gov (United States)

    Ballester, Maria; Rodríguez, Fernando

    2015-01-01

    In situ hybridization (ISH) has become a very valuable molecular diagnostic tool to detect specific DNA or RNA sequences in biological samples through the use of complementary DNA- or RNA-labeled probes. Here, we describe an optimized in situ hybridization protocol to detect African swine fever virus (ASFV) DNA in formalin-fixed, paraffin-embedded tissues using digoxigenin-labeled probes.

  19. Identification of Cannabis sativa L. using the 1-kbTHCA synthase-fluorescence in situ hybridization probe.

    Science.gov (United States)

    Jeangkhwoa, Pattraporn; Bandhaya, Achirapa; Umpunjun, Puangpaka; Chuenboonngarm, Ngarmnij; Panvisavas, Nathinee

    2017-03-01

    This study reports a successful application of fluorescence in situ hybridization (FISH) technique in the identification of Cannabis sativa L. cells recovered from fresh and dried powdered plant materials. Two biotin-16-dUTP-labeled FISH probes were designed from the Cannabis-specific tetrahydrocannabinolic acid synthase (THCAS) gene and the ITS region of the 45S rRNA gene. Specificity of probe-target hybridization was tested against the target and 4 non-target plant species, i.e., Humulus lupulus, Mitragyna speciosa, Papaver sp., and Nicotiana tabacum. The 1-kb THCA synthase hybridization probe gave Cannabis-specific hybridization signals, unlike the 700-bp Cannabis-ITS hybridization probe. Probe-target hybridization was also confirmed against 20 individual Cannabis plant samples. The 1-kb THCA synthase and 700-bp Cannabis-ITS hybridization probes clearly showed 2 hybridization signals per cell with reproducibility. The 1-kb THCA synthase probe did not give any FISH signal when tested against H. lupulus, its closely related member of the Canabaceae family. It was also showed that 1-kb THCA synthase FISH probe can be applied to identify small amount of dried powdered Cannabis material with an addition of rehydration step prior to the experimental process. This study provided an alternative identification method for Cannabis trace. Copyright © 2016. Published by Elsevier B.V.

  20. Hybridization-based biosensor containing hairpin probes and use thereof

    Science.gov (United States)

    Miller, Benjamin L.; Strohsahl, Christopher M.

    2010-10-12

    A sensor chip that includes: a fluorescence quenching surface; a nucleic acid probe that contains first and second ends with the first end bound to the fluorescence quenching surface, and is characterized by being able to self-anneal into a hairpin conformation; and a first fluorophore bound to the second end of the first nucleic acid molecule. When the first nucleic acid molecule is in the hairpin conformation, the fluorescence quenching surface substantially quenches fluorescent emissions by the first fluorophore; and when the first nucleic acid molecule is in a non-hairpin conformation, fluorescent emissions by the fluorophore are substantially free of quenching by the fluorescence quenching surface. Various nucleic acid probes, methods of making the sensor chip, biological sensor devices that contain the sensor chip, and their methods of use are also disclosed.

  1. Probing Structure and Composition of Nickel/Titanium Carbide Hybrid Interfaces at the Atomic Scale (Preprint)

    Science.gov (United States)

    2010-01-01

    The transition in structure and composition across the titanium carbide /nickel hybrid interface has been determined at near atomic resolution by...coupling high-resolution transmission electron microscopy with three-dimensional atom probe tomography. The titanium carbide phase adopts a rocksalt-type

  2. Detection of cyclin D1 mRNA by hybridization sensitive NIC-oligonucleotide probe.

    Science.gov (United States)

    Kovaliov, Marina; Segal, Meirav; Kafri, Pinhas; Yavin, Eylon; Shav-Tal, Yaron; Fischer, Bilha

    2014-05-01

    A large group of fluorescent hybridization probes, includes intercalating dyes for example thiazole orange (TO). Usually TO is coupled to nucleic acids post-synthetically which severely limits its use. Here, we have developed a phosphoramidite monomer, 10, and prepared a 2'-OMe-RNA probe, labeled with 5-(trans-N-hexen-1-yl-)-TO-2'-deoxy-uridine nucleoside, dU(TO), (Nucleoside bearing an Inter-Calating moiety, NIC), for selective mRNA detection. We investigated a series of 15-mer 2'-OMe-RNA probes, targeting the cyclin D1 mRNA, containing one or several dU(TO) at various positions. dU(TO)-2'-OMe-RNA exhibited up to 7-fold enhancement of TO emission intensity upon hybridization with the complementary RNA versus that of the oligomer alone. This NIC-probe was applied for the specific detection of a very small amount of a breast cancer marker, cyclin D1 mRNA, in total RNA extract from cancerous cells (250 ng/μl). Furthermore, this NIC-probe was found to be superior to our related NIF (Nucleoside with Intrinsic Fluorescence)-probe which could detect cyclin D1 mRNA target only at high concentrations (1840 ng/μl). Additionally, dU(T) can be used as a monomer in solid-phase oligonucleotide synthesis, thus avoiding the need for post-synthetic modification of oligonucleotide probes. Hence, we propose dU(TO) oligonucleotides, as hybridization probes for the detection of specific RNA in homogeneous solutions and for the diagnosis of breast cancer.

  3. Automated design of probes for rRNA-targeted fluorescence in situ hybridization reveals the advantages of using dual probes for accurate identification.

    Science.gov (United States)

    Wright, Erik S; Yilmaz, L Safak; Corcoran, Andrew M; Ökten, Hatice E; Noguera, Daniel R

    2014-08-01

    Fluorescence in situ hybridization (FISH) is a common technique for identifying cells in their natural environment and is often used to complement next-generation sequencing approaches as an integral part of the full-cycle rRNA approach. A major challenge in FISH is the design of oligonucleotide probes with high sensitivity and specificity to their target group. The rapidly expanding number of rRNA sequences has increased awareness of the number of potential nontargets for every FISH probe, making the design of new FISH probes challenging using traditional methods. In this study, we conducted a systematic analysis of published probes that revealed that many have insufficient coverage or specificity for their intended target group. Therefore, we developed an improved thermodynamic model of FISH that can be applied at any taxonomic level, used the model to systematically design probes for all recognized genera of bacteria and archaea, and identified potential cross-hybridizations for the selected probes. This analysis resulted in high-specificity probes for 35.6% of the genera when a single probe was used in the absence of competitor probes and for 60.9% when up to two competitor probes were used. Requiring the hybridization of two independent probes for positive identification further increased specificity. In this case, we could design highly specific probe sets for up to 68.5% of the genera without the use of competitor probes and 87.7% when up to two competitor probes were used. The probes designed in this study, as well as tools for designing new probes, are available online (http://DECIPHER.cee.wisc.edu).

  4. Label-Free Potentiometry for Detecting DNA Hybridization Using Peptide Nucleic Acid and DNA Probes

    Directory of Open Access Journals (Sweden)

    Yuji Miyahara

    2013-02-01

    Full Text Available Peptide nucleic acid (PNA has outstanding affinity over DNA for complementary nucleic acid sequences by forming a PNA-DNA heterodimer upon hybridization via Watson-Crick base-pairing. To verify whether PNA probes on an electrode surface enhance sensitivity for potentiometric DNA detection or not, we conducted a comparative study on the hybridization of PNA and DNA probes on the surface of a 10-channel gold electrodes microarray. Changes in the charge density as a result of hybridization at the solution/electrode interface on the self-assembled monolayer (SAM-formed microelectrodes were directly transformed into potentiometric signals using a high input impedance electrometer. The charge readout allows label-free, reagent-less, and multi-parallel detection of target oligonucleotides without any optical assistance. The differences in the probe lengths between 15- to 22-mer dramatically influenced on the sensitivity of the PNA and DNA sensors. Molecular type of the capturing probe did not affect the degree of potential shift. Theoretical model for charged rod-like duplex using the Gouy-Chapman equation indicates the dominant effect of electrostatic attractive forces between anionic DNA and underlying electrode at the electrolyte/electrode interface in the potentiometry.

  5. Label-free potentiometry for detecting DNA hybridization using peptide nucleic acid and DNA probes.

    Science.gov (United States)

    Goda, Tatsuro; Singi, Ankit Balram; Maeda, Yasuhiro; Matsumoto, Akira; Torimura, Masaki; Aoki, Hiroshi; Miyahara, Yuji

    2013-02-07

    Peptide nucleic acid (PNA) has outstanding affinity over DNA for complementary nucleic acid sequences by forming a PNA-DNA heterodimer upon hybridization via Watson-Crick base-pairing. To verify whether PNA probes on an electrode surface enhance sensitivity for potentiometric DNA detection or not, we conducted a comparative study on the hybridization of PNA and DNA probes on the surface of a 10-channel gold electrodes microarray. Changes in the charge density as a result of hybridization at the solution/electrode interface on the self-assembled monolayer (SAM)-formed microelectrodes were directly transformed into potentiometric signals using a high input impedance electrometer. The charge readout allows label-free, reagent-less, and multi-parallel detection of target oligonucleotides without any optical assistance. The differences in the probe lengths between 15- to 22-mer dramatically influenced on the sensitivity of the PNA and DNA sensors. Molecular type of the capturing probe did not affect the degree of potential shift. Theoretical model for charged rod-like duplex using the Gouy-Chapman equation indicates the dominant effect of electrostatic attractive forces between anionic DNA and underlying electrode at the electrolyte/electrode interface in the potentiometry.

  6. Identification of cDNAs by direct hybridization using cosmid probes

    Energy Technology Data Exchange (ETDEWEB)

    Lennon, G.G.; Lieuallen, K.

    1993-12-01

    The goal of this effort is to quickly obtain as many chromosome-specific cDNAs with as much map and sequence detail as possible. Many techniques have been proposed to isolate and identify genes within defined genomic regions; the technique discussed here is direct hybridization of a relatively complex genomic probe, an entire cosmid clone, to cDNA libraries. This method continues to be a straightforward technique with a fair number of successes.

  7. Probe hybridization array typing: a binary typing method for Escherichia coli.

    Science.gov (United States)

    Srinivasan, U; Zhang, L; France, A M; Ghosh, D; Shalaby, W; Xie, J; Marrs, C F; Foxman, B

    2007-01-01

    The ability to distinguish between Escherichia coli strains is critical for outbreak investigations. Binary typing, based on the presence or absence of genetic material, provides a high-throughput alternative to gel- and PCR-based typing techniques that generate complex banding patterns and lack uniform interpretation criteria. We developed, validated, and determined the discriminatory power of an E. coli binary typing method, probe hybridization array typing (PHAT). In PHAT, the absence or presence of genetic material is identified by using DNA hybridization to produce a reproducible and portable fingerprint for each genome. PHAT probes were generated from genome subtractive hybridization experiments. We PHAT typed the ECOR collection of strains from a variety of geographical locations, and 33 rectal E. coli strains selected from college-aged women with urinary tract infection. In the set of 33 human rectal strains, the discriminatory power of PHAT (98%) equaled that of multilocus sequence typing (MLST) and pulsed-field gel electrophoresis. However, for ECOR strains, which include nonhuman strains, the current set of PHAT probes was less discriminating than MLST, ribotyping, and enterobacterial repetitive intergenic consensus sequence PCR (80% versus 97, 92, and 97%, respectively). When we limited the analysis to ECOR strains of B2 and D lineage, which are associated with human infection, current PHAT probes were highly discriminatory (94%). PHAT can be applied in a high-throughput format (i.e., "library on a slide"), the discriminatory ability can be varied based on the probe set, and PHAT is readily adapted to other bacterial species with high variation in genetic content.

  8. Cloned polynucleotide and synthetic oligonucleotide probes used in colony hybridization are equally efficient in the identification of enterotoxigenic Escherichia coli

    Energy Technology Data Exchange (ETDEWEB)

    Sommerfelt, H.; Kalland, K.H.; Raj, P.; Moseley, S.L.; Bhan, M.K.; Bjorvatn, B.

    1988-11-01

    Restriction endonuclease-generated polynucleotide and synthetically produced oligonucleotide gene probes used in colony hybridization assays proved to be efficient for the detection and differentiation of enterotoxigenic Escherichia coli. To compare their relative efficiencies, these two sets of probes were radiolabeled with /sup 32/P and were applied to 74 strains of E. coli with known enterotoxin profiles and to 156 previously unexamined E. coli isolates. The enterotoxigenic bacteria Vibrio cholerae O1, Vibrio cholerae non-O1 (NAG), Yersinia enterocolitica, and E. coli harboring the plasmid vectors of the polynucleotide gene probes were examined for further evaluation of probe specificity. The two classes of probes showed a perfect concordance in their specific detection and differentiation of enterotoxigenic E. coli. In the analysis of six strains, the signal strength on autoradiography after hybridization with oligonucleotides was weaker than that obtained after hybridization with polynucleotide probes. The probes did not hybridize with DNA from V. cholerae O1, V. cholerae non-O1 (NAG), or Y. enterocolitica. The strains of E. coli harboring the plasmid vectors of the polynucleotide gene probes were, likewise, negative in the hybridization assays.

  9. Modeling Hybridization Kinetics of Gene Probes in a DNA Biochip Using FEMLAB

    Directory of Open Access Journals (Sweden)

    Ahsan Munir

    2017-05-01

    Full Text Available Microfluidic DNA biochips capable of detecting specific DNA sequences are useful in medical diagnostics, drug discovery, food safety monitoring and agriculture. They are used as miniaturized platforms for analysis of nucleic acids-based biomarkers. Binding kinetics between immobilized single stranded DNA on the surface and its complementary strand present in the sample are of interest. To achieve optimal sensitivity with minimum sample size and rapid hybridization, ability to predict the kinetics of hybridization based on the thermodynamic characteristics of the probe is crucial. In this study, a computer aided numerical model for the design and optimization of a flow-through biochip was developed using a finite element technique packaged software tool (FEMLAB; package included in COMSOL Multiphysics to simulate the transport of DNA through a microfluidic chamber to the reaction surface. The model accounts for fluid flow, convection and diffusion in the channel and on the reaction surface. Concentration, association rate constant, dissociation rate constant, recirculation flow rate, and temperature were key parameters affecting the rate of hybridization. The model predicted the kinetic profile and signal intensities of eighteen 20-mer probes targeting vancomycin resistance genes (VRGs. Predicted signal intensities and hybridization kinetics strongly correlated with experimental data in the biochip (R2 = 0.8131.

  10. Application of hybridization control probe to increase accuracy on ligation detection or minisequencing diagnostic microarrays

    Directory of Open Access Journals (Sweden)

    Hultman Jenni

    2009-12-01

    Full Text Available Abstract Background Nucleic acid detection based on ligation reaction or single nucleotide extension of ssDNA probes followed by tag microarray hybridization provides an accurate and sensitive detection tool for various diagnostic purposes. Since microarray quality is crucial for reliable detection, these methods can benefit from correcting for microarray artefacts using specifically adapted techniques. Findings Here we demonstrate the application of a per-spot hybridization control oligonucleotide probe and a novel way of computing normalization for tag array data. The method takes into account the absolute value of the detection probe signal and the variability in the control probe signal to significantly alleviate problems caused by artefacts and noise on low quality microarrays. Conclusions Diagnostic microarray platforms require experimental and computational tools to enable efficient correction of array artefacts. The techniques presented here improve the signal to noise ratio and help in determining true positives with better statistical significance and in allowing the use of arrays with poor quality that would otherwise be discarded.

  11. Uprobe 2008: an online resource for universal overgo hybridization-based probe retrieval and design.

    Science.gov (United States)

    Sullivan, Robert T; Morehouse, Caroline B; Thomas, James W

    2008-07-01

    Cross-species sequence comparisons are a prominent method for analyzing genomic DNA and an ever increasing number of species are being selected for whole-genome sequencing. Targeted comparative genomic sequencing is a complementary approach to whole-genome shotgun sequencing and can produce high-quality sequence assemblies of orthologous chromosomal regions of interest from multiple species. Genomic libraries necessary to support targeted mapping and sequencing projects are available for more than 90 vertebrates. An essential step for utilizing these and other genomic libraries for targeted mapping and sequencing is the development of the hybridization-based probes, which are necessary to screen a genomic library of interest. The Uprobe website (http://uprobe.genetics.emory.edu) provides a public online resource for identifying or designing 'universal' overgo-hybridization probes from conserved sequences that can be used to efficiently screen one or more genomic libraries from a designated group of species. Currently, Uprobe provides the ability to search or design probes for use in broad groups of species, including mammals and reptiles, as well as more specific clades, including marsupials, carnivores, rodents and nonhuman primates. In addition, Uprobe has the capability to design custom probes from multiple-species sequence alignments provided by the user, thus providing a general tool for targeted comparative physical mapping.

  12. Intrinsically Labeled Fluorescent Oligonucleotide Probes on Quantum Dots for Transduction of Nucleic Acid Hybridization.

    Science.gov (United States)

    Shahmuradyan, Anna; Krull, Ulrich J

    2016-03-15

    Quantum dots (QDs) have been widely used in chemical and biosensing due to their unique photoelectrical properties and are well suited as donors in fluorescence resonance energy transfer (FRET). Selective hybridization interactions of oligonucleotides on QDs have been determined by FRET. Typically, the QD-FRET constructs have made use of labeled targets or have implemented labeled sandwich format assays to introduce dyes in proximity to the QDs for the FRET process. The intention of this new work is to explore a method to incorporate the acceptor dye into the probe molecule. Thiazole orange (TO) derivatives are fluorescent intercalating dyes that have been used for detection of double-stranded nucleic acids. One such dye system has been reported in which single-stranded oligonucleotide probes were doubly labeled with adjacent thiazole orange derivatives. In the absence of the fully complementary (FC) oligonucleotide target, the dyes form an H-aggregate, which results in quenching of fluorescence emission due to excitonic interactions between the dyes. The hybridization of the FC target to the probe provides for dissociation of the aggregate as the dyes intercalate into the double stranded duplex, resulting in increased fluorescence. This work reports investigation of the dependence of the ratiometric signal on the type of linkage used to conjugate the dyes to the probe, the location of the dye along the length of the probe, and the distance between adjacent dye molecules. The limit of detection for 34mer and 90mer targets was found to be identical and was 10 nM (2 pmol), similar to analogous QD-FRET using labeled oligonucleotide target. The detection system could discriminate a one base pair mismatch (1BPM) target and was functional without substantial compromise of the signal in 75% serum. The 1BPM was found to reduce background signal, indicating that the structure of the mismatch affected the environment of the intercalating dyes.

  13. Single and multiple molecular beacon probes for DNA hybridization studies on a silica glass surface

    Science.gov (United States)

    Fang, Xiaohong; Liu, Xiaojing; Tan, Weihong

    1999-05-01

    Surface immobilizable molecular beacons have been developed for DNA hybridization studies on a silica glass plate. Molecular beacons are a new class of oligonucleotide probes that have a loop-and-stem structure with a fluorophore and a quencher attached to the two ends of the stem. They only emit intense fluorescence when hybridize to their target molecules. This provides an excellent selectivity for the detection of DNA molecules. We have designed biotinylated molecular beacons which can be immobilized onto a solid surface. The molecular beacon is synthesized using DABCYL as the quencher and an optical stable dye, tetramethylrhodamine, as the fluorophore. Mass spectrometry is used to confirm the synthesized molecular beacon. The molecular beacons have been immobilized onto a silica surface through biotin-avidin binding. The surface immobilized molecular beacons have been used for the detection of target DNA with subnanomolar analytical sensitivity. have also immobilized two different molecular beacons on a silica surface in spatially resolved microscopic regions. The hybridization study of these two different molecular beacon probes has shown excellent selectivity for their target sequences. The newly designed molecular beacons are intended for DNA molecular interaction studies at an interface and for the development of ultrasensitive DNA sensors for a variety of applications including disease diagnosis, disease mechanism studies, new drug development, and in the investigation of molecular interactions between DNA molecules and other interesting biomolecules.

  14. [Fluorescence in situ hybridization with DNA probes derived from individual chromosomes and chromosome regions].

    Science.gov (United States)

    Bogomolov, A G; Karamysheva, T V; Rubtsov, N B

    2014-01-01

    A significant part of the eukaryotic genomes consists of repetitive DNA, which can form large clusters or distributed along euchromatic chromosome regions. Repeats located in chromosomal regions make a problem in analysis and identification of the chromosomal material with fluorescence in situ hybridization (FISH). In most cases, the identification of chromosome regions using FISH requires detection of the signal produced with unique sequences. The feasibility, advantages and disadvantages of traditional methods of suppression of repetitive DNA hybridization, methods of repeats-free probe construction and methods of chromosome-specific DNA sequences visualization using image processing of multicolor FISH results are considered in the paper. The efficiency of different techniques for DNA probe generation, different FISH protocols, and image processing of obtained microscopic images depends on the genomic size and structure of analyzing species. This problem was discussed and different approaches were considered for the analysis of the species with very large genome, rare species and species which specimens are too small in size to obtain the amount of genomic and Cot-1 DNA required for suppression of repetitive DNA hybridization.

  15. Carrier-phonon interactions in hybrid halide perovskites probed with ultrafast anisotropy studies

    Science.gov (United States)

    Rivett, Jasmine P. H.; Richter, Johannes M.; Price, Michael B.; Credgington, Dan; Deschler, Felix

    2016-09-01

    Hybrid halide perovskites are at the frontier of optoelectronic research due to their excellent semiconductor properties and solution processability. For this reason, much attention has recently been focused on understanding photoexcited charge-carrier generation and recombination in these materials. Conversely, very few studies have so far been devoted to understanding carrier-carrier and carrier-phonon scattering mechanisms in these materials. This is surprising given that carrier scattering mechanisms fundamentally limit charge-carrier motilities and therefore the performance of photovoltaic devices. We apply linear polarization selective transient absorption measurements to polycrystalline CH3NH3PbBr3 hybrid halide perovskite films as an effective way of studying the scattering processes in these materials. Comparison of the photo induced bleach signals obtained when the linear polarizations of the pump and probe are aligned either parallel or perpendicular to one another, reveal a significant difference in spectral intensity and shape within the first few hundred femtoseconds after photoexcitation.

  16. Label-free DNA hybridization detection by various spectroscopy methods using triphenylmethane dyes as a probe.

    Science.gov (United States)

    Tu, Jiaojiao; Cai, Changqun; Ma, Ying; Luo, Lin; Weng, Chao; Chen, Xiaoming

    2012-12-01

    A new assay is developed for direct detection of DNA hybridization using triphenylmethane dye as a probe. It is based on various spectroscopic methods including resonance light scattering (RLS), circular dichroism (CD), ultraviolet spectra and fluorescence spectra, as well as atomic force microscopy (AFM), six triphenylmethane dyes interact with double strand DNA (dsDNA) and single strand DNA (ssDNA) were investigated, respectively. The interaction results in amplified resonance light scattering signals and enables the detection of hybridization without the need for labeling DNA. Mechanism investigations have shown that groove binding occurs between dsDNA and these triphenylmethane dyes, which depends on G-C sequences of dsDNA and the molecular volumes of triphenylmethane dyes. Our present approaches display the advantages of simple and fast, accurate and reliable, and the artificial samples were determined with satisfactory results. Copyright © 2012 Elsevier B.V. All rights reserved.

  17. [Stain hybridization method with pRepHind probe for the diagnosis of Plasmodium falciparum].

    Science.gov (United States)

    Moleón Borodowsky, I

    1992-01-01

    A study was conducted on the parasitemia detection level and the specificity of the pRepHind DNA probe for diagnosing Plasmodium falciparum by the stain hybridization method. The parasitemia detection level was studied by using dilutions of a P. falciparum in vitro culture, adjusted by direct microscopic examination to 1; 0.1; 0.01; 0.001; 0.0001 and 0.00001% of parasited red cells. Specificity was increased by using DNA extractions from P. Yoelii, P. berghei and human leucocytes. The results showed that the method was able to detect 0.0001% of parasitemia starting from DNA extractions of 100 L infected red cells. The pRepHind probe only detected specifically DNA from P. falciparum. It is concluded that the method is suitable for being used in the diagnosis of infection due to P. falciparum.

  18. Identification of triclosan-degrading bacteria using stable isotope probing, fluorescence in situ hybridization and microautoradiography

    DEFF Research Database (Denmark)

    Lolas, Ihab Bishara Lolas; Chen, Xijuan; Bester, Kai

    2012-01-01

    Triclosan is considered a ubiquitous pollutant and can be detected in a wide range of environmental samples. Triclosan removal by wastewater treatment plants has been largely attributed to biodegradation processes; however, very little is known about the micro-organisms involved. In this study, DNA......-based stable isotope probing (DNA-SIP) combined with microautoradiography-fluorescence in situ hybridization (MAR-FISH) was applied to identify active triclosan degraders in an enrichment culture inoculated with activated sludge. Clone library sequences of 16S rRNA genes derived from the heavy DNA fractions...... of enrichment culture incubated with 13C-labelled triclosan showed a predominant enrichment of a single bacterial clade most closely related to the betaproteobacterial genus Methylobacillus. To verify that members of the genus Methylobacillus were actively utilizing triclosan, a specific probe targeting...

  19. Flow cytometric sorting of fecal bacteria after in situ hybridization with polynucleotide probes.

    Science.gov (United States)

    Bruder, Lena M; Dörkes, Marcel; Fuchs, Bernhard M; Ludwig, Wolfgang; Liebl, Wolfgang

    2016-10-01

    The gut microbiome represents a key contributor to human physiology, metabolism, immune function, and nutrition. Elucidating the composition and genetics of the gut microbiota under various conditions is essential to understand how microbes function individually and as a community. Metagenomic analyses are increasingly used to study intestinal microbiota. However, for certain scientific questions it is sufficient to examine taxon-specific submetagenomes, covering selected bacterial genera in a targeted manner. Here we established a new variant of fluorescence in situ hybridization (FISH) combined with fluorescence-activated cell sorting (FACS), providing access to the genomes of specific taxa belonging to the complex community of the intestinal microbiota. In contrast to standard oligonucleotide probes, the RNA polynucleotide probe used here, which targets domain III of the 23S rRNA gene, extends the resolution power in environmental samples by increasing signal intensity. Furthermore, cells hybridized with the polynucleotide probe are not subjected to harsh pretreatments, and their genetic information remains intact. The protocol described here was tested on genus-specifically labeled cells in various samples, including complex fecal samples from different laboratory mouse types that harbor diverse intestinal microbiota. Specifically, as an example for the protocol described here, RNA polynucleotide probes could be used to label Enterococcus cells for subsequent sorting by flow cytometry. To detect and quantify enterococci in fecal samples prior to enrichment, taxon-specific PCR and qPCR detection systems have been developed. The accessibility of the genomes from taxon-specifically sorted cells for subsequent molecular analyses was demonstrated by amplification of functional genes. Copyright © 2016 Elsevier GmbH. All rights reserved.

  20. Reciprocating Probe Measurements of L-H Transition in LHCD H-mode on EAST

    DEFF Research Database (Denmark)

    Peng, Liu; Guosheng, Xu; Huiqian, Wang

    2013-01-01

    only. Reciprocating Langmuir probe measurements at the outer midplane showed that the electron density ne and electron temperature Te in the scrape-off layer (SOL) were significantly reduced in the ELM-free phase, resulting in the increase of lower-hybrid wave (LHW) reflection. It was found...

  1. Effect of unlabeled helper probes on detection of an RNA target by bead-based sandwich hybridization

    DEFF Research Database (Denmark)

    Barken, K.B.; Cabig-Ciminska, M.; Holmgren, A.;

    2004-01-01

    Unlabeled helper oligonucleotides assisting a bead-based sandwich hybridization assay were tested for the optimal placement of the capture and detection probes. The target used was a full-length in vitro synthesized mRNA molecule. Helper probes complementary to regions adjacent to the binding sit....... Using an electrical chip linked to the detection probe for the detection of p-ominophenol, which is produced by alkaline phosphatase, a detection limit of 2 x 10(-13) M mRNA molecules was reached without the use of a nucleic acid amplification step.......Unlabeled helper oligonucleotides assisting a bead-based sandwich hybridization assay were tested for the optimal placement of the capture and detection probes. The target used was a full-length in vitro synthesized mRNA molecule. Helper probes complementary to regions adjacent to the binding site...

  2. Preliminary test of an imaging probe for nuclear medicine using hybrid pixel detectors

    CERN Document Server

    Bertolucci, Ennio; Mettivier, G; Montesi, M C; Russo, P

    2002-01-01

    We are investigating the feasibility of an intraoperative imaging probe for lymphoscintigraphy with Tc-99m tracer, for sentinel node radioguided surgery, using the Medipix series of hybrid detectors coupled to a collimator. These detectors are pixelated semiconductor detectors bump-bonded to the Medipix1 photon counting read-out chip (64x64 pixel, 170 mu m pitch) or to the Medipix2 chip (256x256 pixel, 55 mu m pitch), developed by the European Medipix collaboration. The pixel detector we plan to use in the final version of the probe is a semi-insulating GaAs detector or a 1-2 mm thick CdZnTe detector. For the preliminary tests presented here, we used 300-mu m thick silicon detectors, hybridized via bump-bonding to the Medipix1 chip. We used a tungsten parallel-hole collimator (7 mm thick, matrix array of 64x64 100 mu m circular holes with 170 mu m pitch), and a 22, 60 and 122 keV point-like (1 mm diameter) radioactive sources, placed at various distances from the detector. These tests were conducted in order ...

  3. Direct fluorescence in situ hybridization on human metaphase chromosomes using quantum dot-platinum labeled DNA probes

    Energy Technology Data Exchange (ETDEWEB)

    Hwang, Gyoyeon [Chemical Kinomics Research Center, Future Convergence Research Division, Korea Institute of Science and Technology, Hwarangno 14-gil 5, Seongbuk-gu, Seoul 136-791 (Korea, Republic of); Biological Chemistry, Korea University of Science and Technology, 217, Gajeong-ro, Yuseong-gu, Deajeon (Korea, Republic of); Lee, Hansol [Chemical Kinomics Research Center, Future Convergence Research Division, Korea Institute of Science and Technology, Hwarangno 14-gil 5, Seongbuk-gu, Seoul 136-791 (Korea, Republic of); Lee, Jiyeon, E-mail: jylee@kist.re.kr [Chemical Kinomics Research Center, Future Convergence Research Division, Korea Institute of Science and Technology, Hwarangno 14-gil 5, Seongbuk-gu, Seoul 136-791 (Korea, Republic of); Biological Chemistry, Korea University of Science and Technology, 217, Gajeong-ro, Yuseong-gu, Deajeon (Korea, Republic of)

    2015-11-13

    The telomere shortening in chromosomes implies the senescence, apoptosis, or oncogenic transformation of cells. Since detecting telomeres in aging and diseases like cancer, is important, the direct detection of telomeres has been a very useful biomarker. We propose a telomere detection method using a newly synthesized quantum dot (QD) based probe with oligonucleotide conjugation and direct fluorescence in situ hybridization (FISH). QD-oligonucleotides were prepared with metal coordination bonding based on platinum-guanine binding reported in our previous work. The QD-oligonucleotide conjugation method has an advantage where any sequence containing guanine at the end can be easily bound to the starting QD-Pt conjugate. A synthesized telomeric oligonucleotide was bound to the QD-Pt conjugate successfully and this probe hybridized specifically on the telomere of fabricated MV-4-11 and MOLT-4 chromosomes. Additionally, the QD-telomeric oligonucleotide probe successfully detected the telomeres on the CGH metaphase slide. Due to the excellent photostability and high quantum yield of QDs, the QD-oligonucleotide probe has high fluorescence intensity when compared to the organic dye-oligonucleotide probe. Our QD-oligonucleotide probe, conjugation method of this QD probe, and hybridization protocol with the chromosomes can be a useful tool for chromosome painting and FISH. - Highlights: • We prepared a probe linked between QD and telomeric oligonucleotide with platinum-guanine bonding. • Telomeres were detected by our new telomere probes successfully in three different human metaphase chromosomes. • QDPt-DNA probe has high fluorescence intensity in comparison with organic dye-DNA probe.

  4. Highly Sensitive Fluorescent-labeled Probes and Glass Slide Hybridization for the Detection of Plant RNA Viruses and a Viroid

    Institute of Scientific and Technical Information of China (English)

    Zhiyou DU; Bo JIN; Wenhong LIU; Liang CHEN; Jishuang CHEN

    2007-01-01

    In this study, a modified method of the conventional RNA dot-blot hybridization was established, by replacing 32P labels with CY5 labels and replacing nylon membranes with positive-charged glass slides, for detecting plant RNA viruses and a viroid. The modified RNA dot-blot hybridization method was named glass slide hybridization. The optimum efficiency of RNA binding onto the surfaces of activated glass slide was achieved using aminosilane-coated glass slide as a solid matrix and 5×saline sodium citrate (SSC) as a spotting solution. Using a CY5-labeled DNA probe prepared through PCR amplification, the optimized glass slide hybridization could detect as little as 1.71 pg of tobacco mosaic virus (TMV) RNA.The sensitivity of the modified method was four times that of dot-blot hybridization on nylon membrane with a 32P-labeled probe. The absence of false positive within the genus Potyvirus [potato virus A, potato virus Y (PVY) and zucchini yellow mosaic virus] showed that this method was highly specific. Furthermore,potato spindle tuber viroid (PSTVd) was also detected specifically. A test of 40 field potato samples showed that this method was equivalent to the conventional dot-blot hybridization for detecting PVY and PSTVd. To our knowledge, this is the first report of using dot-blot hybridization on glass slides with fluorescent-labeled probes for detecting plant RNA viruses and a viroid.

  5. Optical response of a quantum dot-metal nanoparticle hybrid interacting with a weak probe field.

    Science.gov (United States)

    Kosionis, Spyridon G; Terzis, Andreas F; Sadeghi, Seyed M; Paspalakis, Emmanuel

    2013-01-30

    We study optical effects in a hybrid system composed of a semiconductor quantum dot and a spherical metal nanoparticle that interacts with a weak probe electromagnetic field. We use modified nonlinear density matrix equations for the description of the optical properties of the system and obtain a closed-form expression for the linear susceptibilities of the quantum dot, the metal nanoparticle, and the total system. We then investigate the dependence of the susceptibility on the interparticle distance as well as on the material parameters of the hybrid system. We find that the susceptibility of the quantum dot exhibits optical transparency for specific frequencies. In addition, we show that there is a range of frequencies of the applied field for which the susceptibility of the semiconductor quantum dot leads to gain. This suggests that in such a hybrid system quantum coherence can reverse the course of energy transfer, allowing flow of energy from the metallic nanoparticle to the quantum dot. We also explore the susceptibility of the metal nanoparticle and show that it is strongly influenced by the presence of the quantum dot.

  6. Reactive Microcontact Printing of DNA Probes on (DMA-NAS-MAPS) Copolymer-Coated Substrates for Efficient Hybridization Platforms.

    Science.gov (United States)

    Castagna, Rossella; Bertucci, Alessandro; Prasetyanto, Eko Adi; Monticelli, Marco; Conca, Dario Valter; Massetti, Matteo; Sharma, Parikshit Pratim; Damin, Francesco; Chiari, Marcella; De Cola, Luisa; Bertacco, Riccardo

    2016-04-05

    High-performing hybridization platforms fabricated by reactive microcontact printing of DNA probes are presented. Multishaped PDMS molds are used to covalently bind oligonucleotides over a functional copolymer (DMA-NAS-MAPS) surface. Printed structures with minimum width of about 1.5 μm, spaced by 10 μm, are demonstrated, with edge corrugation lower than 300 nm. The quantification of the immobilized surface probes via fluorescence imaging gives a remarkable concentration of 3.3 × 10(3) oligonucleotides/μm(2), almost totally active when used as probes in DNA-DNA hybridization assays. Indeed, fluorescence and atomic force microscopy show a 95% efficiency in target binding and uniform DNA hybridization over printed areas.

  7. Langmuir Solitons in Magnetized Plasmas

    DEFF Research Database (Denmark)

    Dysthe, K. B.; Mjølhus, E.; Pécseli, Hans;

    1978-01-01

    The authors have considered the nonlinear interaction between a high frequency (Langmuir) wave, which propagates at an arbitrary angle to a weak, constant magnetic field, and low frequency (ion-cyclotron or ion-sound) perturbations. In studying Langmuir envelope solitons they have unified...

  8. Towards Fluorescence In Vivo Hybridization (FIVH) Detection of H. pylori in Gastric Mucosa Using Advanced LNA Probes

    DEFF Research Database (Denmark)

    Fontenete, Sílvia; Leite, Marina; Guimarães, Nuno

    2015-01-01

    acid (LNA)/ 2' O-methyl RNA (2'OMe) probe using standard phosphoramidite chemistry and FISH hybridization was then successfully performed both on adhered and suspended bacteria at 37°C. In this work we simplified, shortened and adapted FISH to work at gastric pH values, meaning that the hybridization......In recent years, there have been several attempts to improve the diagnosis of infection caused by Helicobacter pylori. Fluorescence in situ hybridization (FISH) is a commonly used technique to detect H. pylori infection but it requires biopsies from the stomach. Thus, the development of an in vivo...

  9. Identification of Dekkera bruxellensis (Brettanomyces) from wine by fluorescence in situ hybridization using peptide nucleic acid probes.

    Science.gov (United States)

    Stender, H; Kurtzman, C; Hyldig-Nielsen, J J; Sørensen, D; Broomer, A; Oliveira, K; Perry-O'Keefe, H; Sage, A; Young, B; Coull, J

    2001-02-01

    A new fluorescence in situ hybridization method using peptide nucleic acid (PNA) probes for identification of Brettanomyces is described. The test is based on fluorescein-labeled PNA probes targeting a species-specific sequence of the rRNA of Dekkera bruxellensis. The PNA probes were applied to smears of colonies, and results were interpreted by fluorescence microscopy. The results obtained from testing 127 different yeast strains, including 78 Brettanomyces isolates from wine, show that the spoilage organism Brettanomyces belongs to the species D. bruxellensis and that the new method is able to identify Brettanomyces (D. bruxellensis) with 100% sensitivity and 100% specificity.

  10. Dominant Microbial Composition and Its Vertical Distribution in Saline Meromictic Lake Kaiike (Japan) as Revealed by Quantitative Oligonucleotide Probe Membrane Hybridization

    OpenAIRE

    Koizumi, Yoshikazu; Kojima, Hisaya; Fukui, Manabu

    2004-01-01

    Vertical distributions of dominant bacterial populations in saline meromictic Lake Kaiike were investigated throughout the water column and sediment by quantitative oligonucleotide probe membrane hybridization. Three oligonucleotide probes specific for the small-subunit (SSU) rRNA of three groups of Chlorobiaceae were newly designed. In addition, three general domain (Bacteria, Archaea, and Eukarya)-specific probes, two δ-Proteobacteria-specific probes, a Chlorobiaceae-specific probe, and a C...

  11. Genotyping of the CCR5 chemokine receptor by isothermal NASBA amplification and differential probe hybridization.

    Science.gov (United States)

    Romano, J W; Tetali, S; Lee, E M; Shurtliff, R N; Wang, X P; Pahwa, S; Kaplan, M H; Ginocchio, C C

    1999-11-01

    The human CCR5 chemokine receptor functions as a coreceptor with CD4 for infection by macrophage-tropic isolates of human immunodeficiency virus type 1 (HIV-1). A mutated CCR5 allele which encodes a protein that does not function as a coreceptor for HIV-1 has been identified. Thus, expression of the wild-type and/or mutation allele is relevant to determining the infectability of patient peripheral blood mononuclear cells (PBMC) and affects disease progression in vivo. We developed a qualitative CCR5 genotyping assay using NASBA, an isothermal nucleic acid amplification technology. The method involves three enzymes and two oligonucleotides and targets the CCR5 mRNA, which is expressed in PBMC at a copy number higher than 2, the number of copies of DNA present encoding the gene. The single oligonucleotide set amplifies both alleles, and genotyping is achieved by separate hybridizations of wild-type- and mutation-specific probes directly to the single-stranded RNA amplification product. Assay sensitivity and specificity were demonstrated with RNAs produced in vitro from plasmid clones bearing the DNA encoding each allele. No detectable cross-reactivity between wild-type and mutation probes was found, and 50 copies of each allele were readily detectable. Analysis of patient samples found that 20% were heterozygous and 1% were homozygous for the CCR5 mutation. Thus, NASBA is a sensitive and specific means of rapidly determining CCR5 genotype and provides several technical advantages over alternative assay systems.

  12. Estimate of true incomplete exchanges using fluorescence in situ hybridization with telomere probes

    Science.gov (United States)

    Wu, H.; George, K.; Yang, T. C.

    1998-01-01

    PURPOSE: To study the frequency of true incomplete exchanges in radiation-induced chromosome aberrations. MATERIALS AND METHODS: Human lymphocytes were exposed to 2 Gy and 5 Gy of gamma-rays. Chromosome aberrations were studied using the fluorescence in situ hybridization (FISH) technique with whole chromosome-specific probes, together with human telomere probes. Chromosomes 2 and 4 were chosen in the present study. RESULTS: The percentage of incomplete exchanges was 27% when telomere signals were not considered. After excluding false incomplete exchanges identified by the telomere signals, the percentage of incomplete exchanges decreased to 11%. Since telomere signals appear on about 82% of the telomeres, the percentage of true incomplete exchanges should be even lower and was estimated to be 3%. This percentage was similar for chromosomes 2 and 4 and for doses of both 2 Gy and 5 Gy. CONCLUSIONS: The percentage of true incomplete exchanges is significantly lower in gamma-irradiated human lymphocytes than the frequencies reported in the literature.

  13. A Sensitive Alternative for MicroRNA In Situ Hybridizations Using Probes of 2'-O-Methyl RNA + LNA

    DEFF Research Database (Denmark)

    Søe, Martin Jensen; Møller, Trine; Dufva, Martin;

    2011-01-01

    The use of short, high-affinity probes consisting of a combination of DNA and locked nucleic acid (LNA) has enabled the specific detection of microRNAs (miRNAs) by in situ hybridization (ISH). However, detection of low–copy number miRNAs is still not always possible. Here the authors show...... that probes consisting of 2'-O-methyl RNAs (2OMe) and LNA at every third base (2:1 ratio), under optimized hybridization conditions, excluding yeast RNA from the hybridization buffer, can provide superior performance in detection of miRNA targets in terms of sensitivity and signal-to-noise ratio compared...... to DNA + LNA probes. Furthermore, they show that hybridizations can be performed in buffers of 4M urea instead of 50% formamide, thereby yielding an equally specific but nontoxic assay. The use of 2OMe + LNA–based probes and the optimized ISH assay enable simple and fast detection of low–copy number mi...

  14. A LightCycler real-time PCR hybridization probe assay for detecting food-borne thermophilic Campylobacter

    DEFF Research Database (Denmark)

    Perelle, S.; Josefsen, Mathilde Hartmann; Hoorfar, Jeffrey

    2004-01-01

    Cycler real-time PCR assay (LC-PCR), which used fluorescent hybridization probes was developed. The test incorporated an internal amplification control co-amplified with the 16S rRNA gene of Campylobacter to monitor potential PCR inhibitors and ensure successful amplifications. The specificity study involving...

  15. Exploring the Hybridization Thermodynamics of Spherical Nucleic Acids to Tailor Probes for Diagnostic and Therapeutic Applications

    Science.gov (United States)

    Randeria, Pratik Shailesh

    Spherical nucleic acids (SNAs), three-dimensional nanoparticle conjugates composed of densely packed and highly oriented oligonucleotides around organic or inorganic nanoparticles, are an emergent class of nanostructures that show promise as single-entity agents for intracellular messenger RNA (mRNA) detection and gene regulation. SNAs exhibit superior biocompatibility and biological properties compared to linear oligonucleotides, enabling them to overcome many of the limitations of linear oligonucleotides for use in biomedical applications. However, the origins of these biologically attractive properties are not well understood. In this dissertation, the chemistry underlying one such property is studied in detail, and the findings are applied towards the rational design of more effective SNAs for diagnostic and therapeutic applications. Chapter 1 introduces the synthesis of SNAs, the unique properties that make them superior to linear nucleic acids for biomedicine, and previously studied applications of these structures. Chapter 2 focuses on quantitatively studying the impact of the chemical structure of the SNA on its ability to hybridize multiple complementary nucleic acids. This chapter lays the groundwork for understanding the factors that govern SNA hybridization thermodynamics and how to tailor SNAs to increase their binding affinity to target mRNA strands. Chapters 3 and 4 capitalize on this knowledge to engineer probes for intracellular mRNA detection and gene regulation applications. Chapter 3 reports the development of an SNA-based probe that can simultaneously report the expression level of two different mRNA transcripts in live cells and differentiate diseased cells from non-diseased cells. Chapter 4 investigates the use of topically-applied SNAs to down-regulate a critical mediator of impaired wound healing in diabetic mice to accelerate wound closure. This study represents the first topical therapeutic application of SNA nanotechnology to treat open

  16. LNA probes substantially improve the detection of bacterial endosymbionts in whole mount of insects by fluorescent in-situ hybridization

    Directory of Open Access Journals (Sweden)

    Priya Natarajan

    2012-05-01

    Full Text Available Abstract Background Detection of unculturable bacteria and their localization in the host, by fluorescent in-situ hybridization (FISH, is a powerful technique in the study of host-bacteria interaction. FISH probes are designed to target the 16 s rRNA region of the bacteria to be detected. LNA probes have recently been used in FISH studies and proven to be more efficient. To date no report has employed LNA probes for FISH detection of bacterial endosymbiont in the whole mount tissues. Further, though speculated, bacteriocytes have not been reported from males of Bemisia tabaci. Results In this study, we compared the efficiency in detecting bacteria by fluorescent DNA oligonucleotides versus modified probes containing Locked Nucleic Acid (LNA substitution in their structure. We used the insect Bemisia tabaci as the experimental material since it carried simultaneous infection by two bacteria: one a primary endosymbiont, Portiera (and present in more numbers while the other a secondary endosymbiont Arsenophonus (and present in less numbers. Thus a variation in the abundance of bacteria was expected. While detecting both the bacteria, we found a significant increase in the signal whenever LNA probes were used. However, the difference was more pronounced in detecting the secondary endosymbiont, wherein DNA probes gave weak signals when compared to LNA probes. Also, signal to noise ratio for LNA probes was higher than DNA probes. We found that LNA considerably improved sensitivity of FISH, as compared to the commonly used DNA oligonucleotide probe. Conclusion By employing LNA probes we could detect endosymbiotic bacteria in males, which have never been reported previously. We were able to detect bacteriocytes containing Portiera and Arsenophonus in the males of B. tabaci. Thus, employing LNA probes at optimized conditions will help to significantly improve detection of bacteria at the lowest concentration and may give a comprehensible depiction

  17. Tamm-Langmuir surface waves

    Science.gov (United States)

    Golenitskii, K. Â. Yu.; Koshelev, K. Â. L.; Bogdanov, A. Â. A.

    2016-10-01

    In this work we develop a theory of surface electromagnetic waves localized at the interface of periodic metal-dielectric structures. We have shown that the anisotropy of plasma frequency in metal layers lifts the degeneracy of plasma oscillations and opens a series of photonic band gaps. This results in appearance of surface waves with singular density of states—we refer to them as Tamm-Langmuir waves. Such naming is natural since we have found that their properties are very similar to the properties of both bulk Langmuir and surface Tamm waves. Depending on the anisotropy parameters, Tamm-Langmuir waves can be either forward or backward waves. Singular density of states and high sensitivity of the dispersion to the anisotropy of the structure makes Tamm-Langmuir waves very promising for potential applications in nanophotonics and biosensing.

  18. Tamm-Langmuir surface waves

    CERN Document Server

    Golenitskii, K U; Bogdanov, A A

    2016-01-01

    In this work we develop a theory of surface electromagnetic waves localized at the interface of periodic metal-dielectric structures. We have shown that the anisotropy of plasma frequency in metal layers lifts the degeneracy of plasma oscillations and opens a series of photonic band gaps. This results in appearance of surface waves with singular density of states - we refer to them as Tamm-Langmuir waves. Such naming is natural since we have found that their properties are very similar to the properties of both bulk Langmuir and surface Tamm waves. Depending on the anisotropy parameters, Tamm-Langmuir waves can be either forward or backward waves. Singular density of states and high sensitivity of the dispersion to the anisotropy of the structure makes Tamm-Langmuir waves very promising for potential applications in nanophotonics and biosensing.

  19. Phenomenological Modeling for Langmuir Monolayers

    Science.gov (United States)

    Baptiste, Dimitri; Kelly, David; Safford, Twymun; Prayaga, Chandra; Varney, Christopher N.; Wade, Aaron

    Experimentally, Langmuir monolayers have applications in molecular optical, electronic, and sensor devices. Traditionally, Langmuir monolayers are described by a rigid rod model where the rods interact via a Leonard-Jones potential. Here, we propose effective phenomenological models and utilize Monte Carlo simulations to analyze the phase behavior and compare with experimental isotherms. Research reported in this abstract was supported by UWF NIH MARC U-STAR 1T34GM110517-01.

  20. Robust hybridization-based genotyping probes for HPV 6, 11, 16 and 18 obtained via in vitro selection

    Directory of Open Access Journals (Sweden)

    Ivan B. Brukner

    2010-04-01

    Full Text Available This paper describes the technical and analytical performance of a novel set of hybridization probes for the four GARDASIL® vaccine-relevant HPV types (6, 11, 16 and 18. These probes are obtained through in vitro selection from a pool of random oligonucleotides, rather than the traditional “rational design” approach typically used as the initial step in assay development. The type-specific segment of the HPV genome was amplified using a GP5+/6+ PCR protocol and 39 synthetic oligonucleotide templates derived from each of the HPV types, as PCR targets. The robust performance of the 4 selected hybridization probes was demonstrated by monitoring the preservation of the specificity and sensitivity of the typing assay over all 39 HPV types, using a different spectrum of HPV (genome equivalent: 103-109 and human DNA concentrations (10-100 ng as well as temperature and buffer composition variations. To the Authors’ knowledge, this is a unique hybridization-based multiplex typing assay. It performs at ambient temperatures, does not require the strict temperature control of hybridization conditions, and is functional with a number of different non-denaturing buffers, thereby offering downstream compatibility with a variety of detection methods. Studies aimed at demonstrating clinical performance are needed to validate the applicability of this strategy.

  1. Dot-Blot Hybridization for Detection of Five Cucurbit Viruses by Digoxigenin-Labelled cDNA Probes

    Institute of Scientific and Technical Information of China (English)

    MENG Juan; GU Qin-sheng; LIN Shi-ming; PENG Bin; LIU Li-feng; TIAN Yan-ping; LI Li

    2007-01-01

    Dot-blot hybridization was applied in this paper to detect five viruses infecting cucurbitaceous crops,Zuccini yellow mosaic virus(ZYMV),Watermelon mosaic virus(WMV),Cucumber mosaic virus(CMV),Papaya ringspot virus watermelon strain(PRSV-W)and Squash mosaic virus(SqMV),as a good alternative assay in seed health test and epidemiological and transgenic research.Digoxigenin-labelled cDNA probes of the five viruses were synthesized by PCR with the specific primers and applied in dot-blot hybridization to detect five viruses in crude extraction of the infected leaves.And three SqMV probes of different lengths(0.55,1.6,and 2.7 kb,respectively)were designed to investigate the effect of hybridization.The results showed that the sensitivity for detecting the crude extraction of infected leaves by ZYMV,WMV,CMV,PRSV-W,and SqMV was down to 1:160,1:160,1:320,1:160,and 1:320,respectively.Three SqMV probes of different length showed no differences on the sensitivity and specificity.The digoxigenin-labelled probes prepared by PCR could be used for accurate and rapid identification of 5 viruses infecting cucurbitaceous crops with good stabilities,sensitivities,specificity,and reproducibilities.

  2. Group-specific small-subunit rRNA hybridization probes to characterize filamentous foaming in activated sludge systems.

    Science.gov (United States)

    de los Reyes, F L; Ritter, W; Raskin, L

    1997-03-01

    Foaming in activated sludge systems is characterized by the formation of a thick, chocolate brown-colored scum that floats on the surface of aeration basins and secondary clarifiers. These viscous foams have been associated with the presence of filamentous mycolic acid-containing actinomycetes. To aid in evaluating the microbial representation in foam, we developed and characterized group-, genus-, and species-specific oligonucleotide probes targeting the small subunit rRNA of the Mycobacterium complex, Gordona spp., and Gordona (Nocardia) amarae, respectively. The use of a universal base analog, 5-nitroindole, in oligonucleotide probe design was evaluated by comparing the characteristics of two different versions of the Mycobacterium complex probe. The temperature of dissociation of each probe was determined. Probe specificity studies with a diverse collection of 67 target and nontarget rRNAs demonstrated the specificity of the probes to the target groups. Whole-cell hybridizations with fluorescein- and rhodamine-labeled probes were performed with pure cultures of various members of the Mycobacterium complex as well as with environmental samples from a full-scale activated sludge plant which experienced foaming. Quantitative membrane hybridizations with activated sludge and anaerobic digester foam showed that 15.0 to 18.3% of the total small-subunit rRNAs could be attributed to members of the Mycobacterium complex, of which a vast majority consisted of Gordona rRNA. Several G. amarae strains made up only a very small percentage of the Gordona strains present. We demonstrated that group-specific rRNA probes are useful tools for the in situ monitoring and identification of filamentous bacteria in activated sludge systems.

  3. Probing nanoscale chemical segregation and surface properties of antifouling hybrid xerogel films.

    Science.gov (United States)

    Destino, Joel F; Gatley, Caitlyn M; Craft, Andrew K; Detty, Michael R; Bright, Frank V

    2015-03-24

    Over the past decade there has been significant development in hybrid polymer coatings exhibiting tunable surface morphology, surface charge, and chemical segregation-all believed to be key properties in antifouling (AF) coating performance. While a large body of research exists on these materials, there have yet to be studies on all the aforementioned properties in a colocalized manner with nanoscale spatial resolution. Here, we report colocalized atomic force microscopy, scanning Kelvin probe microscopy, and confocal Raman microscopy on a model AF xerogel film composed of 1:9:9 (mol:mol:mol) 3-aminopropyltriethoxysilane (APTES), n-octyltriethoxysilane (C8), and tetraethoxysilane (TEOS) formed on Al2O3. This AF film is found to consist of three regions that are chemically and physically unique in 2D and 3D across multiple length scales: (i) a 1.5 μm thick base layer derived from all three precursors; (ii) 2-4 μm diameter mesa-like features that are enriched in free amine (from APTES), depleted in the other species and that extend 150-400 nm above the base layer; and (iii) 1-2 μm diameter subsurface inclusions within the base layer that are enriched in hydrogen-bonded amine (from APTES) and depleted in the other species.

  4. Evaluating a hybrid three-dimensional metrology system: merging data from optical and touch probe devices

    Science.gov (United States)

    Gerde, Janice R.; Christens-Barry, William A.

    2011-08-01

    In a project to meet requirements for CBP Laboratory analysis of footwear under the Harmonized Tariff Schedule of the United States (HTSUS), a hybrid metrology system comprising both optical and touch probe devices has been assembled. A unique requirement must be met: To identify the interface-typically obscured in samples of concern-of the "external surface area upper" (ESAU) and the sole without physically destroying the sample. The sample outer surface is determined by discrete point cloud coordinates obtained using laser scanner optical measurements. Measurements from the optically inaccessible insole region are obtained using a coordinate measuring machine (CMM). That surface similarly is defined by point cloud data. Mathematically, the individual CMM and scanner data sets are transformed into a single, common reference frame. Custom software then fits a polynomial surface to the insole data and extends it to intersect the mesh fitted to the outer surface point cloud. This line of intersection defines the required ESAU boundary, thus permitting further fractional area calculations to determine the percentage of materials present. With a draft method in place, and first-level method validation underway, we examine the transformation of the two dissimilar data sets into the single, common reference frame. We also will consider the six previously-identified potential error factors versus the method process. This paper reports our on-going work and discusses our findings to date.

  5. Non-Covalent Fluorescent Labeling of Hairpin DNA Probe Coupled with Hybridization Chain Reaction for Sensitive DNA Detection.

    Science.gov (United States)

    Song, Luna; Zhang, Yonghua; Li, Junling; Gao, Qiang; Qi, Honglan; Zhang, Chengxiao

    2016-04-01

    An enzyme-free signal amplification-based assay for DNA detection was developed using fluorescent hairpin DNA probes coupled with hybridization chain reaction (HCR). The hairpin DNAs were designed to contain abasic sites in the stem moiety. Non-covalent labeling of the hairpin DNAs was achieved when a fluorescent ligand was bound to the abasic sites through hydrogen bonding with the orphan cytosine present on the complementary strand, accompanied by quench of ligand fluorescence. As a result, the resultant probes, the complex formed between the hairpin DNA and ligand, showed almost no fluorescence. Upon hybridization with target DNA, the probe underwent a dehybridization of the stem moiety containing an abasic site. The release of ligand from the abasic site to the solution resulted in an effective fluorescent enhancement, which can be used as a signal. Compared with a sensing system without HCR, a 20-fold increase in the sensitivity was achieved using the sensing system with HCR. The fluorescent intensity of the sensing system increased with the increase in target DNA concentration from 0.5 nM to 100 nM. A single mismatched target ss-DNA could be effectively discriminated from complementary target DNA. Genotyping of a G/C single-nucleotide polymorphism of polymerase chain reaction (PCR) products was successfully demonstrated with the sensing system. Therefore, integrating HCR strategy with non-covalent labeling of fluorescent hairpin DNA probes provides a sensitive and cost-effective DNA assay.

  6. Quantification of syntrophic fatty acid-beta-oxidizing bacteria in a mesophilic biogas reactor by oligonucleotide probe hybridization

    DEFF Research Database (Denmark)

    Hansen, K.W.; Ahring, Birgitte Kiær; Raskin, L.

    1999-01-01

    -beta-oxidizing syntrophic bacteria, were developed and characterized. The probes were designed to be specific at the family, genus, and species levels and were characterized by temperature of-dissociation and specificity studies, To demonstrate the usefulness of the probes for the detection and quantification of saturated......Small-subunit rRNA sequences were obtained for two saturated fatty acid-beta-oxidizing syntrophic bacteria, Syntrophomonas sapovorans and Syntrophomonas wolfei LYE, and sequence analysis confirmed their classification as members of the family Syntrophomonadaceae. S, wolfei LYE was closely related...... fatty acid-beta-oxidizing syntrophic bacteria in methanogenic environments, the microbial community structure of a sample from a full-scale biogas plant was determined. Hybridization results with probes for syntrophic bacteria-and methanogens were compared to specific methanogenic activities...

  7. Positional order in Langmuir monolayers

    DEFF Research Database (Denmark)

    Kaganer, V.M.; Brezesinski, G.; Möhwald, H.;

    1998-01-01

    We find that a structural solid-solid phase transition in a two-dimensional Langmuir film is accompanied by strong positional disorder. Specifically, we find by a grazing-incidence x-ray diffraction experiment that in monolayers of octadecanol both the hexagonal phase LS and the centered rectangu......We find that a structural solid-solid phase transition in a two-dimensional Langmuir film is accompanied by strong positional disorder. Specifically, we find by a grazing-incidence x-ray diffraction experiment that in monolayers of octadecanol both the hexagonal phase LS and the centered...

  8. Langmuir Blodgett films of porphyrins and phthalocyanines

    CERN Document Server

    Portus, D

    2002-01-01

    Phthalocyanines and porphyrins have been studied for many years as bulk, thick and thin films. Their use in Langmuir and Langmuir-Blodgett films is governed by their peripheral substituents. These can enhance or reduce their ability to form 'quality' ultra-thin films. There are a number of potential and current applications for thin films of porphyrins and phthalocyanines, which include CD-R discs and gas-sensors. It is the latter that this PhD has focussed on. Ultra-thin films of phthalocyanines, porphyrins and a porphyrin/phthalocyanine hybrid dye were deposited onto glass microscope slides, gold-coated glass microscope slides and quartz crystals. These assemblies were then characterised using Ultraviolet-Visible spectroscopy, pressure-area isotherms, surface plasmon resonance and a quartz crystal microbalance to try and determine the nature of the molecules on the surface of the substrate. The thin films were exposed to chlorine gas and the change in their absorption spectrum and (in some cases) their surf...

  9. Experimental characterization of the lower hybrid wave field on the first pass using a magnetic probe array

    Science.gov (United States)

    Shinya, T.; Baek, S. G.; Wallace, G. M.; Parker, R. R.; Shiraiwa, S.; Takase, Y.

    2016-10-01

    Experimental characterization of the lower hybrid (LH) wave propagation from the launcher to the core plasma is important to validate an antenna spectrum model and to identify parasitic wave-edge plasma interactions occurring in front of the launcher. On Alcator C-Mod, the wave frequency spectrum and dominant parallel wavenumber are characterized with two probe arrays installed near the edge plasma. The first one is mounted on a radially movable structure that is about 108 deg toroidally away from the launcher. A phasing scan experiment at moderate density suggests a resonance-cone propagation of the launched slow LH wave with a finite spectral width. As plasma density is raised, the measured power decreases, correlated with the observed loss of efficiency. Recently, the second probe array with an increased number of probes has been installed on a limiter that is 54 deg. toroidally away from the launcher, which is expected to be dominantly sensitive to the wave-field directly leaving the launcher. An initial measurement shows that the probe array detects a coherent wave field. A full-wave model to evaluate the wave electric-field pattern in front of the probe array is under development. If available, further experimental and modeling results will be presented. Supported by USDoE Award(s) DE-FC02-99ER54512 and Japan/U.S. Cooperation in Fusion Research and Development.

  10. Towards Fluorescence In Vivo Hybridization (FIVH Detection of H. pylori in Gastric Mucosa Using Advanced LNA Probes.

    Directory of Open Access Journals (Sweden)

    Sílvia Fontenete

    Full Text Available In recent years, there have been several attempts to improve the diagnosis of infection caused by Helicobacter pylori. Fluorescence in situ hybridization (FISH is a commonly used technique to detect H. pylori infection but it requires biopsies from the stomach. Thus, the development of an in vivo FISH-based method (FIVH that directly detects and allows the visualization of the bacterium within the human body would significantly reduce the time of analysis, allowing the diagnosis to be performed during endoscopy. In a previous study we designed and synthesized a phosphorothioate locked nucleic acid (LNA/ 2' O-methyl RNA (2'OMe probe using standard phosphoramidite chemistry and FISH hybridization was then successfully performed both on adhered and suspended bacteria at 37°C. In this work we simplified, shortened and adapted FISH to work at gastric pH values, meaning that the hybridization step now takes only 30 minutes and, in addition to the buffer, uses only urea and probe at non-toxic concentrations. Importantly, the sensitivity and specificity of the FISH method was maintained in the range of conditions tested, even at low stringency conditions (e.g., low pH. In conclusion, this methodology is a promising approach that might be used in vivo in the future in combination with a confocal laser endomicroscope for H. pylori visualization.

  11. Towards Fluorescence In Vivo Hybridization (FIVH) Detection of H. pylori in Gastric Mucosa Using Advanced LNA Probes

    Science.gov (United States)

    Fontenete, Sílvia; Leite, Marina; Guimarães, Nuno; Madureira, Pedro; Ferreira, Rui Manuel; Figueiredo, Céu; Wengel, Jesper; Azevedo, Nuno Filipe

    2015-01-01

    In recent years, there have been several attempts to improve the diagnosis of infection caused by Helicobacter pylori. Fluorescence in situ hybridization (FISH) is a commonly used technique to detect H. pylori infection but it requires biopsies from the stomach. Thus, the development of an in vivo FISH-based method (FIVH) that directly detects and allows the visualization of the bacterium within the human body would significantly reduce the time of analysis, allowing the diagnosis to be performed during endoscopy. In a previous study we designed and synthesized a phosphorothioate locked nucleic acid (LNA)/ 2’ O-methyl RNA (2’OMe) probe using standard phosphoramidite chemistry and FISH hybridization was then successfully performed both on adhered and suspended bacteria at 37°C. In this work we simplified, shortened and adapted FISH to work at gastric pH values, meaning that the hybridization step now takes only 30 minutes and, in addition to the buffer, uses only urea and probe at non-toxic concentrations. Importantly, the sensitivity and specificity of the FISH method was maintained in the range of conditions tested, even at low stringency conditions (e.g., low pH). In conclusion, this methodology is a promising approach that might be used in vivo in the future in combination with a confocal laser endomicroscope for H. pylori visualization. PMID:25915865

  12. Dichromatic Langmuir waves in degenerate quantum plasma

    Science.gov (United States)

    Dubinov, A. E.; Kitayev, I. N.

    2015-06-01

    Langmuir waves in fully degenerate quantum plasma are considered. It is shown that, in the linear approximation, Langmuir waves are always dichromatic. The low-frequency component of the waves corresponds to classical Langmuir waves, while the high-frequency component, to free-electron quantum oscillations. The nonlinear problem on the profile of dichromatic Langmuir waves is solved. Solutions in the form of a superposition of waves and in the form of beatings of its components are obtained.

  13. Quantification of syntrophic fatty acid-beta-oxidizing bacteria in a mesophilic biogas reactor by oligonucleotide probe hybridization

    DEFF Research Database (Denmark)

    Hansen, K.W.; Ahring, Birgitte Kiær; Raskin, L.

    1999-01-01

    Small-subunit rRNA sequences were obtained for two saturated fatty acid-beta-oxidizing syntrophic bacteria, Syntrophomonas sapovorans and Syntrophomonas wolfei LYE, and sequence analysis confirmed their classification as members of the family Syntrophomonadaceae. S, wolfei LYE was closely related...... to S. wolfei subsp. wolfei, but S. sapovorans did not cluster with the other members of the genus Syntrophomonas, Five oligonucleotide probes targeting the small-subunit rRNA of different groups within the family Syntrophomonadaceae, which contains all currently known saturated fatty acid...... fatty acid-beta-oxidizing syntrophic bacteria in methanogenic environments, the microbial community structure of a sample from a full-scale biogas plant was determined. Hybridization results with probes for syntrophic bacteria-and methanogens were compared to specific methanogenic activities...

  14. Application of rRNA probes and fluorescence in situ hybridization for rapid detection of the toxic dinoflagellate Alexandrium minutum

    Science.gov (United States)

    Tang, Xianghai; Yu, Rencheng; Zhou, Mingjiang; Yu, Zhigang

    2012-03-01

    The dinoflagellate Alexandrium minutum is often associated with harmful algal blooms (HABs). This species consists of many strains that differ in their ability to produce toxins but have similar morphology, making identification difficult. In this study, species-specific rRNA probes were designed for whole-cell fluorescence in situ hybridization (FISH) to distinguish A. minutum from two phylogenetic clades. We acquired the complete SSU to LSU rDNA sequences (GenBank accession numbers JF906989-JF906999) of 11 Alexandrium strains and used these to design rRNA targeted oligonucleotide probes. Three ribotype-specific probes, M-GC-1, M-PC-2, and M-PC-3, were designed. The former is specific for the GC clade ("Global clade") of A. minutum, the majority of which have been found non-toxic, and the latter two are specific for the PSP (paralytic shellfish poisoning)-producing PC clade ("Pacific clade"). The specificity of these three probes was confirmed by FISH. All cells in observed fields of view were fluorescently labeled when probes and target species were incubated under optimized FISH conditions. However, the accessibility of rRNA molecules in ribosomes varied among the probe binding positions. Thus, there was variation in the distribution of positive signals in labeled cells within nucleolus and cytosol (M-GC-1, M-PC-3), or just nucleolus (M-PC-2). Our results provide a methodological basis for studying the biogeography and population dynamics of A. minutum, and providing an early warning of toxic HABs.

  15. Application of rRNA probes and fluorescence in situ hybridization for rapid detection of the toxic dinoflagellate Alexandrium minutum

    Institute of Scientific and Technical Information of China (English)

    TANG Xianghai; YU Rencheng; ZHOU Mingjiang; YU Zhigang

    2012-01-01

    The dinoflagellate Alexandrium minutum is often associated with harmful algal blooms (HABs).This species consists of many strains that differ in their ability to produce toxins but have similar morphology,making identification difficult.In this study,species-specific rRNA probes were designed for whole-cell fluorescence in situ hybridization (FISH) to distinguish A.minutum from two phylogenetic clades.We acquired the complete SSU to LSU rDNA sequences (GenBank accession numbers JF906989-JF906999) of 11 Alexandrium strains and used these to design rRNA targeted oligonucleotide probes.Three ribotype-specific probes,M-GC-1,M-PC-2,and M-PC-3,were designed.The former is specific for the GC clade (“Global clade”) of A.minutum,the majority of which have been found non-toxic,and the latter two are specific for the PSP (paralytic shellfish poisoning)-producing PC clade (“Pacific clade”).The specificity of these three probes was confirmed by FISH.All cells in observed fields of view were fluorescently labeled when probes and target species were incubated under optimized FISH conditions.However,the accessibility of rRNA molecules in ribosomes varied among the probe binding positions.Thus,there was variation in the distribution of positive signals in labeled cells within nucleolus and cytosol (M-GC-1,M-PC-3),or just nucleolus (M-PC-2).Our results provide a methodological basis for studying the biogeography and population dynamics of A.minutum,and providing an early warning of toxic HABs.

  16. Validation of break-apart and fusion MYC probes using a digital fluorescence in situ hybridization capture and imaging system

    Directory of Open Access Journals (Sweden)

    Michael Liew

    2016-01-01

    Full Text Available Introduction: Detection of MYC translocations using fluorescence in situ hybridization (FISH is important in the evaluation of lymphomas, in particular, Burkitt lymphoma and diffuse large B-cell lymphoma. Our aim was to validate a digital FISH capture and imaging system for the detection of MYC 8q24 translocations using LSI-MYC (a break-apart probe and MYC 8;14 translocation using IGH-MYC (a fusion probe. Materials and Methods: LSI-MYC probe was evaluated using tissue sections from 35 patients. IGH-MYC probe was evaluated using tissue sections from forty patients. Sections were processed for FISH and analyzed using traditional methods. FISH slides were then analyzed using the GenASIs capture and analysis system. Results: Results for LSI-MYC had a high degree of correlation between traditional method of FISH analysis and digital FISH analysis. Results for IGH-MYC had a 100% concordance between traditional method of FISH analysis and digital FISH analysis. Conclusion: Annotated whole slide images of H and E and FISH sections can be digitally aligned, so that areas of tumor within a section can be matched and evaluated with a greater degree of accuracy. Images can be archived permanently, providing a means for examining the results retrospectively. Digital FISH imaging of the MYC translocations provides a better diagnostic tool compared to traditional methods for evaluating lymphomas.

  17. Validation of break-apart and fusion MYC probes using a digital fluorescence in situ hybridization capture and imaging system

    Science.gov (United States)

    Liew, Michael; Rowe, Leslie; Clement, Parker W.; Miles, Rodney R.; Salama, Mohamed E.

    2016-01-01

    Introduction: Detection of MYC translocations using fluorescence in situ hybridization (FISH) is important in the evaluation of lymphomas, in particular, Burkitt lymphoma and diffuse large B-cell lymphoma. Our aim was to validate a digital FISH capture and imaging system for the detection of MYC 8q24 translocations using LSI-MYC (a break-apart probe) and MYC 8;14 translocation using IGH-MYC (a fusion probe). Materials and Methods: LSI-MYC probe was evaluated using tissue sections from 35 patients. IGH-MYC probe was evaluated using tissue sections from forty patients. Sections were processed for FISH and analyzed using traditional methods. FISH slides were then analyzed using the GenASIs capture and analysis system. Results: Results for LSI-MYC had a high degree of correlation between traditional method of FISH analysis and digital FISH analysis. Results for IGH-MYC had a 100% concordance between traditional method of FISH analysis and digital FISH analysis. Conclusion: Annotated whole slide images of H and E and FISH sections can be digitally aligned, so that areas of tumor within a section can be matched and evaluated with a greater degree of accuracy. Images can be archived permanently, providing a means for examining the results retrospectively. Digital FISH imaging of the MYC translocations provides a better diagnostic tool compared to traditional methods for evaluating lymphomas. PMID:27217970

  18. Dominant microbial composition and its vertical distribution in saline meromictic Lake Kaiike (Japan) as revealed by quantitative oligonucleotide probe membrane hybridization.

    Science.gov (United States)

    Koizumi, Yoshikazu; Kojima, Hisaya; Fukui, Manabu

    2004-08-01

    Vertical distributions of dominant bacterial populations in saline meromictic Lake Kaiike were investigated throughout the water column and sediment by quantitative oligonucleotide probe membrane hybridization. Three oligonucleotide probes specific for the small-subunit (SSU) rRNA of three groups of Chlorobiaceae were newly designed. In addition, three general domain (Bacteria, Archaea, and Eukarya)-specific probes, two delta-Proteobacteria-specific probes, a Chlorobiaceae-specific probe, and a Chloroflexi-specific probe were used after optimization of their washing conditions. The abundance of the sum of SSU rRNAs hybridizing with probes specific for three groups of Chlorobiaceae relative to total SSU rRNA peaked in the chemocline, accounting for up to 68%. The abundance of the delta-proteobacterial SSU rRNA relative to total SSU rRNA rapidly increased just below the chemocline up to 29% in anoxic water and peaked at the 2- to 3-cm sediment depth at ca. 34%. The abundance of SSU rRNAs hybridizing with the probe specific for the phylum Chloroflexi relative to total SSU rRNA was highest (31 to 54%) in the top of the sediment but then steeply declined with depth and became stable at 11 to 19%, indicating the robust coexistence of sulfate-reducing bacteria and Chloroflexi in the top of the sediment. Any SSU rRNA of Chloroflexi in the water column was under the detection limit. The summation of the signals of group-specific probes used in this study accounted for up to 89% of total SSU rRNA, suggesting that the DGGE-oligonucleotide probe hybridization approach, in contrast to conventional culture-dependent approaches, was very effective in covering dominant populations.

  19. Construction of a repeat-free dual color fluorescent in situ hybridization probe for ROS1 gene in non-small cell lung cancer diagnosis

    Institute of Scientific and Technical Information of China (English)

    程弘夏

    2014-01-01

    Objective To establish a repeat-free ROS1 gene fluorescence in situ hybridization(FISH)probe,and to compare its efficacy with those of commercial FISH probes in non-small cell lung cancer.Methods The probe was constructed by combining human Cot-1 DNA genome into double-stranded sequence,and then digested by duples specific nuclease to establish a repeat-free sequene.The final repeat-free ROS1 FISH probe was labeled by red and green fluoresceins.Results Compared

  20. Formation of a hybrid plasmonic waveguide mode probed by dispersion measurement

    Energy Technology Data Exchange (ETDEWEB)

    Saito, H. [Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011 (Japan); Quantum Nanoelectronics Research Center, Tokyo Institute of Technology, Oh-Okayama, Meguro-ku, Tokyo 152-8551 (Japan); Kurata, H., E-mail: kurata@eels.kuicr.kyoto-u.ac.jp [Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011 (Japan)

    2015-04-07

    Hybrid waveguides, i.e., dielectric waveguides combined with plasmonic waveguides, have great potential for concomitantly exhibiting subwavelength confinement and long range propagation, enabling a highly integrated photonic circuit. We report the characterization of hybrid waveguide modes excited in Si/SiO{sub 2}/Al films, by dispersion measurement using angle-resolved electron energy-loss spectroscopy. This experiment directly verifies the formation of the hybrid waveguide mode with a strongly localized electromagnetic field in a 6-nm-thick SiO{sub 2} layer. The results clearly describe the characteristic behavior of the hybrid waveguide mode, which depends on the effective index of the constituent dielectric waveguide and the surface plasmon-polariton modes.

  1. Bimodal Imaging Probes for Combined PET and OI: Recent Developments and Future Directions for Hybrid Agent Development

    Directory of Open Access Journals (Sweden)

    Uwe Seibold

    2014-01-01

    Full Text Available Molecular imaging—and especially positron emission tomography (PET—has gained increasing importance for diagnosis of various diseases and thus experiences an increasing dissemination. Therefore, there is also a growing demand for highly affine PET tracers specifically accumulating and visualizing target structures in the human body. Beyond the development of agents suitable for PET alone, recent tendencies aim at the synthesis of bimodal imaging probes applicable in PET as well as optical imaging (OI, as this combination of modalities can provide clinical advantages. PET, due to the high tissue penetration of the γ-radiation emitted by PET nuclides, allows a quantitative imaging able to identify and visualize tumors and metastases in the whole body. OI on the contrary visualizes photons exhibiting only a limited tissue penetration but enables the identification of tumor margins and infected lymph nodes during surgery without bearing a radiation burden for the surgeon. Thus, there is an emerging interest in bimodal agents for PET and OI in order to exploit the potential of both imaging techniques for the imaging and treatment of tumor diseases. This short review summarizes the available hybrid probes developed for dual PET and OI and discusses future directions for hybrid agent development.

  2. Hybridization study of developmental plastid gene expression in mustard (Sinapsis alba L.) with cloned probes for most plastid DNA regions.

    Science.gov (United States)

    Link, G

    1984-07-01

    An approach to assess the extent of developmental gene expression of various regions of plastid (pt)DNA in mustard (Sinapis alba L.) is described. It involves cloning of most ptDNA regions. The cloned regions then serve as hybridization probes to detect and assess the abundance of complementary RNA sequences represented in total plastid RNA. By comparison of the hybridization pattern observed with plastid RNA from either dark-grown or light-grown plants it was found that many ptDNA regions are constitutively expressed, while several 'inducible' regions account for much higher transcript levels in the chloroplast than in the etioplast stage. The reverse situation, i.e. 'repressed' regions which would account for higher transcript levels in the etioplast, was not observed. The hybridization results obtained with RNA from 'intermediatetype' plastids suggest that transient gene expression is a common feature during light-induced chloroplast development. The time-course of gene expression differs for various ptDNA regions.

  3. Detection of Helicobacter Pylori Genome with an Optical Biosensor Based on Hybridization of Urease Gene with a Gold Nanoparticles-Labeled Probe

    Science.gov (United States)

    Shahrashoob, M.; Mohsenifar, A.; Tabatabaei, M.; Rahmani-Cherati, T.; Mobaraki, M.; Mota, A.; Shojaei, T. R.

    2016-05-01

    A novel optics-based nanobiosensor for sensitive determination of the Helicobacter pylori genome using a gold nanoparticles (AuNPs)-labeled probe is reported. Two specific thiol-modified capture and signal probes were designed based on a single-stranded complementary DNA (cDNA) region of the urease gene. The capture probe was immobilized on AuNPs, which were previously immobilized on an APTES-activated glass, and the signal probe was conjugated to different AuNPs as well. The presence of the cDNA in the reaction mixture led to the hybridization of the AuNPs-labeled capture probe and the signal probe with the cDNA, and consequently the optical density of the reaction mixture (AuNPs) was reduced proportionally to the cDNA concentration. The limit of detection was measured at 0.5 nM.

  4. Computationally Probing the Performance of Hybrid, Heterogeneous, and Homogeneous Iridium-Based Catalysts for Water Oxidation

    Energy Technology Data Exchange (ETDEWEB)

    García-Melchor, Max [SUNCAT Center for Interface Science and Catalysis, Department of Chemical Engineering, Stanford University, Stanford CA (United States); Vilella, Laia [Institute of Chemical Research of Catalonia (ICIQ), The Barcelona Institute of Science and Technology (BIST),Tarragona (Spain); Departament de Quimica, Universitat Autonoma de Barcelona, Barcelona (Spain); López, Núria [Institute of Chemical Research of Catalonia (ICIQ), The Barcelona Institute of Science and Technology (BIST), Tarragona (Spain); Vojvodic, Aleksandra [SUNCAT Center for Interface Science and Catalysis, SLAC National Accelerator Laboratory, Menlo Park CA (United States)

    2016-04-29

    An attractive strategy to improve the performance of water oxidation catalysts would be to anchor a homogeneous molecular catalyst on a heterogeneous solid surface to create a hybrid catalyst. The idea of this combined system is to take advantage of the individual properties of each of the two catalyst components. We use Density Functional Theory to determine the stability and activity of a model hybrid water oxidation catalyst consisting of a dimeric Ir complex attached on the IrO2(110) surface through two oxygen atoms. We find that homogeneous catalysts can be bound to its matrix oxide without losing significant activity. Hence, designing hybrid systems that benefit from both the high tunability of activity of homogeneous catalysts and the stability of heterogeneous systems seems feasible.

  5. Identification of human rotavirus serotype by hybridization to polymerase chain reaction-generated probes derived from a hyperdivergent region of the gene encoding outer capsid protein VP7

    Energy Technology Data Exchange (ETDEWEB)

    Flores, J.; Sears, J.; Schael, I.P.; White, L.; Garcia, D.; Lanata, C.; Kapikian, A.Z. (National Institutes of Health, Bethesda, MD (USA))

    1990-08-01

    We have synthesized {sup 32}P-labeled hybridization probes from a hyperdivergent region (nucleotides 51 to 392) of the rotavirus gene encoding the VP7 glycoprotein by using the polymerase chain reaction method. Both RNA (after an initial reverse transcription step) and cloned cDNA from human rotavirus serotypes 1 through 4 could be used as templates to amplify this region. High-stringency hybridization of each of the four probes to rotavirus RNAs dotted on nylon membranes allowed the specific detection of corresponding sequences and thus permitted identification of the serotype of the strains dotted. The procedure was useful when applied to rotaviruses isolated from field studies.

  6. Domain Relaxation in Langmuir Films

    Science.gov (United States)

    Bernoff, Andrew J.; Alexander, James C.; Mann, Elizabeth K.; Mann, J. Adin; Zou, Lu; Wintersmith, Jacob R.

    2007-11-01

    We report on an experimental, theoretical and computational study of a molecularly thin polymer Langmuir layer domain on the surface of a subfluid. When stretched (by a transient stagnation flow), the Langmuir layer takes the form of a bola consisting of two roughly circular reservoirs connected by a thin tether. This shape relaxes to the circular minimum energy configuration. The tether is never observed to rupture, even when it is more than a hundred times as long as it is thin. We model these experiments as a free boundary problem where motion is driven by the line tension of the domain and damped by the viscosity of the subfluid. We process the digital images of the experiment to extract the domain shape, use one of these shapes as an initial condition for the numerical solution of a boundary-integral model of the underlying hydrodynamics, and compare the subsequent images of the experiment to the numerical simulation. The numerical evolutions verify that our hydrodynamical model can reproduce the observed dynamics. They also allow us to deduce the magnitude of the line tension in the system, often to within 1%.

  7. In situ hybridization of cytokine mRNA using alkaline phosphatase-labelled oligodeoxynucleotide probes

    DEFF Research Database (Denmark)

    Clausen, Bettina Hjelm; Fenger, Christina; Finsen, B.

    2013-01-01

    In situ hybridization is a powerful tool for visualizing cellular gene expression in morphologically preserved brain tissue giving precise information on the regional expression of specific mRNA sequences in cells of diverse phenotype. Here, we describe a sensitive, simple, and robust method using...

  8. Lipid reassembly in asymmetric Langmuir-Blodgett/Langmuir-Schaeffer bilayers.

    Science.gov (United States)

    Yuan, Jie; Hao, Changchun; Chen, Maohui; Berini, Pierre; Zou, Shan

    2013-01-08

    Molecular-reorganization-induced morphology alteration in asymmetric substrate-supported lipid bilayers (SLBs) was directly visualized by means of atomic force microscopy (AFM) and total internal reflection fluorescence (TIRF) microscopy. SLB samples were fabricated on mica-on-glass and glass substrates by Langmuir-Blodgett (LB)/Langmuir-Schaeffer (LS) using binary lipid mixtures, namely, 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC)/1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) and ternary mixtures DOPC/DPPC/1,2-dioleoyl-sn-glycero-3-phospho-L-serine (DOPS), labeled with 0.2 mol % Texas Red 1,2-dihexadecanoyl-sn-glycero-3-phosphoethanolamine triethylammonium salt (TR-DHPE) dye. Phase segregations were characterized by TIRF imaging, and DPPC-enriched domain structures were also observed. Interestingly for ∼40% (n = 6) of the samples with binary mixtures in the LB leaflet and a single component in the LS leaflet, that is, (DOPC/DPPC)(LB)+DOPC(LS), the contrast of the DPPC domains changed from the original dark (without dye) to bright (more TR dye partitioning) on TIRF images, returning to dark again. This contrast reverse was also correlated to AFM height images, where a DPPC-DPPC gel phase was spotted after the TIRF image contrast returned to dark. The rupture force mapping results measured on these binary mixture samples also confirmed unambiguously the formation of DPPC-DPPC gel domain components during the contrast change. The samples were tracked over 48 h to investigate the lipid molecule movements in both the DPPC domains and the DOPC fluid phase. The fluorescence contrast changes from bright to dark in SLBs indicate that the movement of dye molecules was independent of the movement of lipid molecules. In addition, correlated multimodal imaging using AFM, force mapping, and fluorescence provides a novel route to uncover the reorganization of lipid molecules at the solid-liquid interface, suggesting that the dynamics of dye molecules is highly

  9. Langmuir and Langmuir-Blodgett films of bidisperse silica nanoparticles.

    Science.gov (United States)

    Detrich, Adám; Deák, András; Hild, Erzsébet; Kovács, Attila L; Hórvölgyi, Zoltán

    2010-02-16

    We present the studies on the structure and optical properties of bidisperse Stöber silica nanoparticulate Langmuir films prepared at the air/water interface in a Wilhelmy film balance and transferred onto glass slides using the Langmuir-Blodgett technique. Three different compositions (covered area ratios: 4:1; 1:1, and 1:4) of two bidisperse systems were used in the experiments. Bidisperse samples (B1 and B2) were prepared by mixing the appropriate amount of monodisperse sols of particles with 61 and 100 nm diameters (B1) and those with 37 and 100 nm diameters (B2). By surface pressure-area isotherms and (transmission and scanning) electron microscopy images we provide information about the structure of the films. Optical properties of the supported films were measured with UV-vis spectroscopy and the transmittance spectra were evaluated in terms of an optical model which allows monotonous in-depth variation of the refractive index across the film. (1) We have found that the refractive index decreased from the substrate-layer interface toward the air-layer interface when the smaller particles were in majority, and increased otherwise. That would suggest that the smaller particles of each bidisperse system can be positioned at the air side of the film if they are in minority in the sample and they can be situated on the substrate if they are in majority. The scanning electron microscope images of bidisperse films supported the in-depth film structure suggested by optical studies.

  10. Hybrid intracerebral probe with integrated bare LED chips for optogenetic studies.

    Science.gov (United States)

    Ayub, Suleman; Gentet, Luc J; Fiáth, Richárd; Schwaerzle, Michael; Borel, Mélodie; David, François; Barthó, Péter; Ulbert, István; Paul, Oliver; Ruther, Patrick

    2017-09-01

    This article reports on the development, i.e., the design, fabrication, and validation of an implantable optical neural probes designed for in vivo experiments relying on optogenetics. The probes comprise an array of ten bare light-emitting diode (LED) chips emitting at a wavelength of 460 nm and integrated along a flexible polyimide-based substrate stiffened using a micromachined ladder-like silicon structure. The resulting mechanical stiffness of the slender, 250-μm-wide, 65-μm-thick, and 5- and 8-mm-long probe shank facilitates its implantation into neural tissue. The LEDs are encapsulated by a fluropolymer coating protecting the implant against the physiological conditions in the brain. The electrical interface to the external control unit is provided by 10-μm-thick, highly flexible polyimide cables making the probes suitable for both acute and chronic in vivo experiments. Optical and electrical properties of the probes are reported, as well as their in vivo validation in acute optogenetic studies in transgenic mice. The depth-dependent optical stimulation of both excitatory and inhibitory neurons is demonstrated by altering the brain activity in the cortex and the thalamus. Local network responses elicited by 20-ms-long light pulses of different optical power (20 μW and 1 mW), as well as local modulation of single unit neuronal activity to 1-s-long light pulses with low optical intensity (17 μW) are presented. The ability to modulate neural activity makes these devices suitable for a broad variety of optogenetic experiments.

  11. Using NV centers to probe magnetization dynamics in normal metal/magnetic insulator hybrid system at the nanoscale

    Science.gov (United States)

    Zhang, Huiliang; Ku, Mark J. H.; Han, Minyong; Casola, Francesco; van der Sar, Toeno; Yacoby, Amir; Walsworth, Ronald L.

    2016-05-01

    Understanding magnetization dynamics induced by electric current is of great interest for both fundamental and practical reasons. Great endeavor has been dedicated to spin-orbit torques (SOT) in metallic structures, while quantitative study of analogous phenomena in magnetic insulators remains challenging where transport measurements are not feasible. Recently we have developed techniques using nitrogen vacancy (NV) centers in diamond to probe few-nanometre-scale correlated-electron magnetic excitations (i.e., spin waves). Here we demonstrate how this powerful tool can be implemented to study magnetization dynamics inside ferromagnetic insulator, Yttrium iron garnet (YIG) with spin injection from electrical current through normal metal (Platinum in our case). Particularly our work will focus on NV magnetic detection, imaging, and spectroscopy of coherent auto-oscillations in Pt/YIG microdisc. Magnetic fluctuations and local temperature measurements, both with nearby NV centers, will also be interesting topics relevant to SOT physics in Pt/YIG hybrid system.

  12. Analysis of messenger RNA expression by in situ hybridization using RNA probes synthesized via in vitro transcription

    Science.gov (United States)

    Carter, Bradley S.; Fletcher, Jonathan S.; Thompson, Robert C.

    2010-01-01

    The analysis of the spatial patterning of mRNA expression is critically important for assigning functional and physiological significance to a given gene product. Given the tens of thousands of mRNAs in the mammalian genome, a full assessment of individual gene functions would ideally be overlaid upon knowledge of the specific cell types expressing each mRNA. In situ hybridization approaches represent a molecular biological/histological method that can reveal cellular patterns of mRNA expression. Here, we present detailed procedures for the detection of specific mRNAs using radioactive RNA probes in tissue sections followed by autoradiographic detection. These methods allow for the specific and sensitive detection of spatial patterns of mRNA expression, thereby linking mRNA expression with cell type and function. Radioactive detection methods also facilitate semi-quantitative analyses of changes in mRNA gene expression. PMID:20699122

  13. Strong Langmuir turbulence at Jupiter?

    Science.gov (United States)

    Cairns, Iver H.; Robinson, P. A.

    1992-01-01

    Langmuir wave packets with short scale lengths less than an approximately equal to 100 lambda e have been observed in Jupiter's foreshock. Theoretical constraints on the electric fields and scale sizes of collapsing wave packets are summarized, extended and placed in a form suitable for easy comparison with Voyager and Ulysses data. The published data are reviewed and possible instrumental underestimation of fields discussed. New upper limits for the fields of the published wave packets are estimated. Wave packets formed at the nucleation scale from the observed large-scale fields cannot collapse because they are disrupted before collapse occurs. The published wave packets are quantitatively inconsistent with strong turbulence collapse. Strict constraints exist for more intense wave packets to be able to collapse: E greater than or approximately equals to 1-8 mV/m for scales less than or approximately equal to 100 lambda e. Means for testing these conclusions using Voyager and Ulysses data are suggested.

  14. Comparison of viable cell counts and fluorescence in situ hybridization using specific rRNA-based probes for the quantification of human fecal bacteria

    NARCIS (Netherlands)

    Harmsen, HJM; Gibson, GR; Elfferich, P; Raangs, GC; Wildeboer-Veloo, ACM; Argaiz, A; Roberfroid, MB; Welling, GW

    2000-01-01

    Conventional cultivation and fluorescence in situ hybridization (FISH) using 16S rRNA-based probes were compared for the enumeration of human colonic bacteria. Groups of common intestinal anaerobic bacteria were enumerated in slurries prepared From fecal samples of three healthy volunteers. To intro

  15. QUANTITATIVE FLUORESCENCE IN-SITU HYBRIDIZATION OF BIFIDOBACTERIUM SPP WITH GENUS-SPECIFIC 16S RIBOSOMAL-RNA-TARGETED PROBES AND ITS APPLICATION IN FECAL SAMPLES

    NARCIS (Netherlands)

    LANGENDIJK, PS; SCHUT, F; JANSEN, GJ; RAANGS, GC; KAMPHUIS, GR; WILKINSON, MHF; WELLING, GW

    1995-01-01

    Three 16S rRNA hybridization probes were developed and tested for genus-specific detection of Bifidobacterium species in the human fecal flora. Variable regions V2, V4, and VS of the 16S rRNA contained sequences unique to this genus and proved applicable as target sites for oligodeoxynucleotide prob

  16. Limitations to Using Linearized Langmuir Equations

    Science.gov (United States)

    One of the most commonly used models for describing solute sorption to soils is the Langmuir model. Because the Langmuir model is nonlinear, fitting the model to sorption data requires that the model be solved iteratively using an optimization program. To avoid the use of optimization programs, a li...

  17. Probing the structure and function of biopolymer-carbon nanotube hybrids with molecular dynamics

    Science.gov (United States)

    Johnson, Robert R.

    2009-12-01

    Nanoscience deals with the characterization and manipulation of matter on the atomic/molecular size scale in order to deepen our understanding of condensed matter and develop revolutionary technology. Meeting the demands of the rapidly advancing nanotechnological frontier requires novel, multifunctional nanoscale materials. Among the most promising nanomaterials to fulfill this need are biopolymer-carbon nanotube hybrids (Bio-CNT). Bio-CNT consists of a single-walled carbon nanotube (CNT) coated with a self-assembled layer of biopolymers such as DNA or protein. Experiments have demonstrated that these nanomaterials possess a wide range of technologically useful properties with applications in nanoelectronics, medicine, homeland security, environmental safety and microbiology. However, a fundamental understanding of the self-assembly mechanics, structure and energetics of Bio-CNT is lacking. The objective of this thesis is to address this deficiency through molecular dynamics (MD) simulation, which provides an atomic-scale window into the behavior of this unique nanomaterial. MD shows that Bio-CNT composed of single-stranded DNA (ssDNA) self-assembles via the formation of high affinity contacts between DNA bases and the CNT sidewall. Calculation of the base-CNT binding free energy by thermodynamic integration reveals that these contacts result from the attractive pi--pi stacking interaction. Binding affinities follow the trend G > A > T > C. MD reveals that long ssDNA sequences are driven into a helical wrapping about CNT with a sub-10 nm pitch by electrostatic and torsional interactions in the backbone. A large-scale replica exchange molecular dynamics simulation reveals that ssDNA-CNT hybrids are disordered. At room temperature, ssDNA can reside in several low-energy conformations that contain a sequence-specific arrangement of bases detached from CNT surface. MD demonstrates that protein-CNT hybrids composed of the Coxsackie-adenovirus receptor are biologically

  18. A nucleic acid probe labeled with desmethyl thiazole orange: a new type of hybridization-sensitive fluorescent oligonucleotide for live-cell RNA imaging.

    Science.gov (United States)

    Okamoto, Akimitsu; Sugizaki, Kaori; Yuki, Mizue; Yanagisawa, Hiroyuki; Ikeda, Shuji; Sueoka, Takuma; Hayashi, Gosuke; Wang, Dan Ohtan

    2013-01-14

    A new fluorescent nucleotide with desmethyl thiazole orange dyes, D'(505), has been developed for expansion of the function of fluorescent probes for live-cell RNA imaging. The nucleoside unit of D'(505) for DNA autosynthesis was soluble in organic solvents, which made the preparation of nucleoside units and the reactions in the cycles of DNA synthesis more efficient. The dyes of D'(505)-containing oligodeoxynucleotide were protonated below pH 7 and the oligodeoxynucleotide exhibited hybridization-sensitive fluorescence emission through the control of excitonic interactions of the dyes of D'(505). The simplified procedure and effective hybridization-sensitive fluorescence emission produced multicolored hybridization-sensitive fluorescent probes, which were useful for live-cell RNA imaging. The acceptor-bleaching method gave us information on RNA in a specific cell among many living cells.

  19. Improving Probe Immobilization for Label-Free Capacitive Detection of DNA Hybridization on Microfabricated Gold Electrodes

    Directory of Open Access Journals (Sweden)

    Sandro Carrara

    2008-02-01

    Full Text Available Alternative approaches to labeled optical detection for DNA arrays are actively investigated for low-cost point-of-care applications. In this domain, label-free capacitive detection is one of the most intensely studied techniques. It is based on the idea to detect the Helmholtz ion layer displacements when molecular recognition occurs at the electrodes/solution interface. The sensing layer is usually prepared by using thiols terminated DNA single-strength oligonucleotide probes on top of the sensor electrodes. However, published data shows evident time drift, which greatly complicates signal conditioning and processing and ultimately increases the uncertainty in DNA recognition sensing. The aim of this work is to show that newly developed ethylene-glycol functionalized alkanethiols greatly reduce time drift, thereby significantly improving capacitance based label-free detection of DNA.

  20. Optically nonlinear Langmuir Blodgett films

    CERN Document Server

    Amiri, M A

    2003-01-01

    A series of novel amphiphilic molecules plus a new class of chevron-shaped materials, without aliphatic tails, were designed, synthesised and non-centrosymmetrically aligned by the Langmuir-Blodgett technique. Their LB films exhibited optical second-harmonic generation (SHG). The chevron-shaped molecules have a central cationic acceptor and two pi-bridged donor groups with an angle of ca. 120 deg between the charge-transfer axes of the D-pi-(A sup +)-pi-D unit. A monolayer LB film of a representative example, 1-butyl-2,6-bis[2- (4-dibutylaminophenyl)vinyl]pyridinium iodide, has an effective susceptibility, chi sup ( sup 2 sup ) sub e sub f sub f , of 120 pm V sup - sup 1 at 1064 nm, a thickness of 1.16 nm and an area in contact with the substrate of 0.91 nm sup 2 molecule sup - sup 1. The second-harmonic intensity (1.6 x 10 sup - sup 4 versus quartz) is similar to those of the extensively studied conventional amphiphilic hemicyanines but as a result of non-centrosymmetric alignment, without the need for long ...

  1. Generalized Langmuir Waves in Magnetized Kinetic Plasmas

    Science.gov (United States)

    Willes, A. J.; Cairns, Iver H.

    2000-01-01

    The properties of unmagnetized Langmuir waves and cold plasma magnetoionic waves (x, o, z and whistler) are well known. However, the connections between these modes in a magnetized kinetic plasma have not been explored in detail. Here, wave properties are investigated by numerically solving the dispersion equation derived from the Vlasov equations both with and without a beam instability present. For omega(sub p)>Omega(sub e), it is shown that the generalized Langmuir mode at oblique propagation angles has magnetic z-mode characteristics at low wave numbers and thermal Langmuir mode characteristics at high wave numbers. For omega(sub p)Langmuir mode instead connects to the whistler mode at low wave numbers. The transition from the Langmuir/z mode to the Langmuir/whistler mode near omega(sub p) = Omega(sub e) is rapid. In addition, the effects on wave dispersion and polarization after adding a beam are investigated. Applications of this theory to magnetized Langmuir waves in Earth's foreshock and the solar wind, to waves observed near the plasma frequency in the auroral regions, and to solar type III bursts are discussed.

  2. Differentiation of Moraxella nonliquefaciens, M. lacunata, and M. bovis by using multilocus enzyme electrophoresis and hybridization with pilin-specific DNA probes.

    Science.gov (United States)

    Tønjum, T; Caugant, D A; Bøvre, K

    1992-12-01

    Genetic relationships among strains of Moraxella nonliquefaciens, M. lacunata, and M. bovis were studied by using multilocus enzyme electrophoresis and DNA-DNA hybridization. The 74 isolates analyzed for electrophoretic variation at 12 enzyme loci were assigned to 59 multilocus genotypes. The multilocus genotypes were grouped in four major clusters, one representing strains of M. nonliquefaciens, two representing strains of M. lacunata, and one comprising strains of M. bovis and the single strain of M. equi analyzed. DNA-DNA hybridization with total genomic probes also revealed four major distinctive entities that corresponded to those identified by multilocus enzyme electrophoresis. The two distinct clusters recognized among the M. lacunata strains apparently corresponded to the species previously designated M. lacunata and M. liquefaciens. Distinction of the four entities was improved by hybridization with polymerase chain reaction products of nonconserved parts of pilin genes as DNA probes. With these polymerase chain reaction probes, new isolates of M. nonliquefaciens, M. lacunata, M. liquefaciens, and M. bovis can be identified easily by hybridization.

  3. Fluorescent in situ hybridization analysis of open lactic acid fermentation of kitchen refuse using rRNA-targeted oligonucleotide probes.

    Science.gov (United States)

    Sakai, Kenji; Mori, Masatsugu; Fujii, Akira; Iwami, Yuko; Chukeatirote, Ekachai; Shirai, Yoshihito

    2004-01-01

    Reproducible amounts of lactic acid accumulate in minced kitchen refuse under open conditions with intermittent pH neutralization [Sakai et al., Food Sci. Technol. Res., 6, 140 (2000)]. Here, we showed that such pH-controlled open fermentation of kitchen refuse reproducibly resulted a selective proliferation of a major lactic acid bacterial (LAB) species. In one experiment, the predominant microorganisms isolated during the early phase (6 h) were Gammaproteobacteria. In contrast, those that predominated during the late phase (48 h) were always Lactobacillus plantarum in three independent experiments. To further quantify the microbial community within open lactic acid fermentation, we performed fluorescent in situ hybridization (FISH) analysis targeting 16S (23S) rRNA. We designed two new group-specific DNA probes: LAC722(L) was active for most LAB including the genera Lactobacillus, Pediococcus, Leuconostoc and Weisella, whereas Lplan477 was specific for L. plantarum and its related species. We then optimized sample preparation using lysozyme and hybridization conditions including temperature, as well as the formamide concentration and the salt concentration in the washing buffer. We succeeded in quantification of microorganisms in semi-solid, complex biological materials such as minced kitchen refuse by taking color microphotographs in modified RGB balance on pre-coated slides. FISH analysis of the fermentation of kitchen refuse indicated that control of the pH swing leads to domination by the LAB population in minced kitchen refuse under open conditions. We also confirmed that L. plantarum, which generates lactic acid in high quantities but with low optical activity, became the dominant microorganism in kitchen refuse during the late phase of open fermentation.

  4. Probing particle acceleration in lower hybrid turbulence via synthetic diagnostics produced by PIC simulations

    Science.gov (United States)

    Cruz, F.; Fonseca, R. A.; Silva, L. O.; Rigby, A.; Gregori, G.; Bamford, R. A.; Bingham, R.; Koenig, M.

    2016-10-01

    Efficient particle acceleration in astrophysical shocks can only be achieved in the presence of initial high energy particles. A candidate mechanism to provide an initial seed of energetic particles is lower hybrid turbulence (LHT). This type of turbulence is commonly excited in regions where space and astrophysical plasmas interact with large obstacles. Due to the nature of LH waves, energy can be resonantly transferred from ions (travelling perpendicular to the magnetic field) to electrons (travelling parallel to it) and the consequent motion of the latter in turbulent shock electromagnetic fields is believed to be responsible for the observed x-ray fluxes from non-thermal electrons produced in astrophysical shocks. Here we present PIC simulations of plasma flows colliding with magnetized obstacles showing the formation of a bow shock and the consequent development of LHT. The plasma and obstacle parameters are chosen in order to reproduce the results obtained in a recent experiment conducted at the LULI laser facility at Ecole Polytechnique (France) to study accelerated electrons via LHT. The wave and particle spectra are studied and used to produce synthetic diagnostics that show good qualitative agreement with experimental results. Work supported by the European Research Council (Accelerates ERC-2010-AdG 267841).

  5. In situ hybridization of bat chromosomes with human (TTAGGGn probe, after previous digestion with Alu I

    Directory of Open Access Journals (Sweden)

    Karina de Cassia Faria

    2002-01-01

    Full Text Available The purpose of this work was to verify the ability of the enzyme Alu I to cleave and/or remove satellite DNA sequences from heterochromatic regions in chromosomes of bats, by identifying the occurrence of modifications in the pattern of fluorescence in situ hybridization with telomeric DNA. The localization and fluorescence intensity of the telomeric DNA sites of the Alu-digested and undigested chromosomes of species Eumops glaucinus, Carollia perspicillata, and Platyrrhinus lineatus were analyzed. Telomeric sequences were detected at the termini of chromosomes of all three species, although, in C. perspicillata, the signals were very faint or absent in most chromosomes. This finding was interpreted as being due to a reduced number of copies of the telomeric repeat, resulting from extensive telomeric association and/or rearrangements undergone by the chromosomes of Carollia. Fluorescent signals were also observed in centromeric and pericentromeric regions in several two-arm chromosomes of E. glaucinus and C. perspicillata. In E. glaucinus and P. lineatus, some interstitial and terminal telomeric sites were observed to be in association with regions of constitutive heterochromatin and ribosomal DNA (NORs. After digestion, these telomeric sites showed a significant decrease in signal intensity, indicating that enzyme Alu I cleaves and/or removes part of the satellite DNA present in these regions. These results suggest that the telomeric sequence is a component of the heterochromatin, and that the C-band- positive regions of bat chromosomes have a different DNA composition.

  6. A Langmuir-Schaefer approach for the synthesis of highly ordered organoclay thin films

    NARCIS (Netherlands)

    Toma, Luminita M.; Gengler, Regis Y. N.; Prinsen, Eric B.; Gournis, Dimitrios; Rudolf, Petra

    2010-01-01

    The Langmuir-Schaefer (LS) method has been investigated as a means to control the structure of hybrid organoclay thin films consisting of montmorillonite and dimethyldioctadecylammonium (DODA) cations. We observed a significant modification of the compression isotherms as a function of clay mineral

  7. Localization of cannabinoid CB1 receptor mRNA using ribonucleotide probes: methods for double- and single-label in situ hybridization.

    Science.gov (United States)

    Hohmann, Andrea G

    2006-01-01

    This chapter presents a reliable, detailed method for performing double-label in situ hybridization (ISH) that has been validated for use in studies identifying the co-localization of cannabinoid CB1 receptor mRNA with other distinct species of mRNAs. This method permits simultaneous detection of two different species of mRNA within the same tissue section. Double-label ISH may be accomplished by hybridizing tissue sections with a combination of radiolabeled and digoxigenin-labeled RNA probes that are complementary to their target mRNAs. Single-label ISH may be accomplished by following the procedures described for use with radioisotopic probes (here [35S]-labeled) only. Silver grains derived from conventional emulsion autoradiography are used to detect the radiolabeled cRNA probe. An alkaline phosphatase-dependent chromogen reaction product is used to detect the nonisotopic (here, digoxigenin-labeled) cRNA probe. Necessary controls that are required to document the specificity of the labeling of the digoxigenin and radiolabeled probes are described. The methods detailed herein may be employed to detect even low levels of a target mRNA. These methods may be utilized to study co-localization and coregulation of expression of a particular gene within identified neurons in multiple systems.

  8. Homoeologous chromosome pairing in the distant hybrid Alstroemeria aurea x A. inodora and the genome composition of its backcross derivatives determined by fluorescence in situ hybridization with species-specific probes.

    Science.gov (United States)

    Kamstra, S A; Ramanna, M S; de Jeu, M J; Kuipers, A G; Jacobsen, E

    1999-01-01

    A distant hybrid between two diploid species (2n = 2x = 16), Alstroemeria aurea and A. inodora, was investigated for homoeologous chromosome pairing, crossability with A. inodora and chromosome transmission to its BC1 offspring. Fluorescence in situ hybridization (FISH) with two species-specific probes, A001-I (A. aurea specific) and D32-13 (A. inodora specific), was used to analyse chromosome pairing in the hybrid and the genome constitution of its BC1 progeny plants. High frequencies of associated chromosomes were observed in both genotypes of the F1 hybrid, A1P2-2 and A1P4. In the former, both univalents and bivalents were found at metaphase I, whereas the latter plant also showed tri- and quadrivalents. Based on the hybridization sites of DNA probes on the chromosomes of both parental species, it was established that hybrid A1P4 contains a reciprocal translocation between the short arm of chromosome 1 and the long arm of chromosome 8 of A. inodora. Despite regular homoeologous chromosome pairing in 30% of the pollen mother cells, both hybrids were highly sterile. They were backcrossed reciprocally with one of the parental species, A. inodora. Two days after pollination, embryo rescue was applied and, eventually, six BC1 progeny plants were obtained. Among these, two were aneuploids (2n = 2x + 1 = 17) and four were triploids (2n = 3x = 24). The aneuploid plants had originated when the interspecific hybrid was used as a female parent, indicating that n eggs were functional in the hybrid. In addition, 2n gametes were also functional in the hybrid, resulting in the four triploid BC1 plants. Of these four plants, three had received 2n pollen grains from the hybrid and one a 2n egg. Using FISH, homoeologous crossing over between the chromosomes of the two parental species in the hybrid was clearly detected in all BC1 plants. The relevance of these results for the process of introgression and the origin of n and 2n gametes are discussed.

  9. Langmuir-Blodgett Films of Graphene Derivatives

    DEFF Research Database (Denmark)

    Petersen, Søren Vermehren

    The work presented in this PhD thesis can be divided into two main categories: 1) Syn-thesis and Langmuir-Blodgett assembly of graphene derivatives and 2) Application and characterization of graphene derivatives as an interface material in molecular electron-ics. While the first category could...... be divided further, the synthesis and Langmuir-Blodgett results are intertwined in such a way that it would be more confusing to pre-sent them separately. The Langmuir-Blodgett deposition also played a crucial, but more isolated, part in the investigation of graphene derivatives as interface material...... were investigated using the Langmuir-Blodgett technique. It was found that reduction of graphene oxide back into graphene did not seem possible in solution, while still maintaining its monolayer character. Instead, an alternative route for graphene synthesis was then designed. This involved...

  10. Abegg, Lewis, Langmuir, and the Octet Rule.

    Science.gov (United States)

    Jensen, William B.

    1984-01-01

    Discusses major events leading to the development of the octet rule. Three conclusions based on the work of Mendeleev, Abegg, Thompson, Kossel, Lewis, and Langmuir are considered as is the debate over the rule's validity. (JN)

  11. Peptide nucleic acid probe for protein affinity purification based on biotin-streptavidin interaction and peptide nucleic acid strand hybridization.

    Science.gov (United States)

    Tse, Jenny; Wang, Yuanyuan; Zengeya, Thomas; Rozners, Eriks; Tan-Wilson, Anna

    2015-02-01

    We describe a new method for protein affinity purification that capitalizes on the high affinity of streptavidin for biotin but does not require dissociation of the biotin-streptavidin complex for protein retrieval. Conventional reagents place both the selectively reacting group (the "warhead") and the biotin on the same molecule. We place the warhead and the biotin on separate molecules, each linked to a short strand of peptide nucleic acid (PNA), synthetic polymers that use the same bases as DNA but attached to a backbone that is resistant to attack by proteases and nucleases. As in DNA, PNA strands with complementary base sequences hybridize. In conditions that favor PNA duplex formation, the warhead strand (carrying the tagged protein) and the biotin strand form a complex that is held onto immobilized streptavidin. As in DNA, the PNA duplex dissociates at moderately elevated temperature; therefore, retrieval of the tagged protein is accomplished by a brief exposure to heat. Using iodoacetate as the warhead, 8-base PNA strands, biotin, and streptavidin-coated magnetic beads, we demonstrate retrieval of the cysteine protease papain. We were also able to use our iodoacetyl-PNA:PNA-biotin probe for retrieval and identification of a thiol reductase and a glutathione transferase from soybean seedling cotyledons. Copyright © 2014 Elsevier Inc. All rights reserved.

  12. Identification and quantification of Bifidobacterium species isolated from food with genus-specific 16S rRNA-targeted probes by colony hybridization and PCR.

    Science.gov (United States)

    Kaufmann, P; Pfefferkorn, A; Teuber, M; Meile, L

    1997-01-01

    A Bifidobacterium genus-specific target sequence in the V9 variable region of the 16S rRNA has been elaborated and was used to develop a hybridization probe. The specificity of this probe, named lm3 (5'-CGGGTGCTI*CCCACTTTCATG-3'), was used to identify all known type strains and distinguish them from other bacteria. All of the 30 type strains of Bifidobacterium which are available at the German culture collection Deutsche Sammlung von Mikroorganismen und Zellkulturen, 6 commercially available production strains, and 34 closely related relevant strains (as negative controls) were tested. All tested bifidobacteria showed distinct positive signals by colony hybridization, whereas all negative controls showed no distinct dots except Gardnerella vaginalis DSM4944 and Propionibacterium freudenreichii subsp. shermanii DSM4902, which gave slight signals. Furthermore, we established a method for isolation and identification of bifidobacteria from food by using a PCR assay without prior isolation of DNA but breaking the cells with proteinase K. By this method, all Bifidobacterium strains lead to a DNA product of the expected size. We also established a quick assay to quantitatively measure Bifidobacterium counts in food and feces by dilution plating and colony hybridization. We were able to demonstrate that 2.1 x 10(6) to 2.3 x 10(7) colonies/g of sour milk containing bifidobacteria hybridized with the specific nucleotide probe. With these two methods, genus-specific colony hybridization and genus-specific PCR, it is now possible to readily and accurately detect any bifidobacteria in food and fecal samples and to discriminate between them and members of other genera. PMID:9097423

  13. Microsatellite instability typing in serum and tissue of patients with colorectal cancer: comparing real time PCR with hybridization probe and high-performance liquid chromatography.

    Science.gov (United States)

    Mokarram, P; Rismanchi, M; Alizadeh Naeeni, M; Mirab Samiee, S; Paryan, M; Alipour, A; Honardar, Z; Kavousipour, S; Naghibalhossaini, F; Mostafavi-Pour, Z; Monabati, A; Hosseni, S V; Shamsdin, S A

    2014-05-01

    Allelic variation of BAT-25 (a 25-repeat quasimonomorphic poly T) and BAT-26 (a 26-repeat quasimonomorphic polyA) loci as two mononucleotide microsatellite markers, were analyzed with high-performance liquid chromatography (HPLC) compared with Real-Time PCR using hybridization probes. BAT-26 and BAT-25 markers were used to determine an appropriate screening technique with high sensitivity and specificity to diagnose microsatellite instability (MSI) status in patients with colorectal cancer (CRC). One of the pathways in colorectal tumor genesis is microsatellite instability (MSI+). MSI is detected in about 15% of all CRCs; 3% are of these are associated with Lynch syndrome and the other 12% are caused by sporadic. Colorectal tumors with MSI have distinctive features compared with microsatellite stable tumors. Due to the high percentage of MSI+ CRC in Iran, screening of this type of CRC is imperative. Two markers were analyzed in tissues and sera of 44 normal volunteers and tumor and matched normal mucosal tissues as well as sera of 44 patients with sporadic CRC. The sensitivity and specificity of BAT-26 with real time PCR method (Hybridization probe) were 100% in comparison with sequencing method as the gold standard, while HPLC had a lower sensitivity and specificity. According to HPLC data, BAT-26 was more sensitive than BAT-25 in identifying MSI tumors. Therefore, MSI typing using the BAT-26 hybridization probe method compared to HPLC could be considered as an accurate method for diagnosing MSI in CRC tumors but not in serum circulating DNAs.

  14. Sounding-Rocket Studies of Langmuir-Wave Microphysics in the Auroral Ionosphere

    Science.gov (United States)

    Dombrowski, Micah P.

    agreement with expected signatures of beating between pure, field-aligned, linearly polarized Langmuir waves and obliquely propagating, elliptically polarized, hybrid whistler-Langmuir waves. Finally, an autonomous digital signal processor/receiver has been refined and augmented to achieve high time- and frequency-resolution radio observations, synchronized sampling between multiple receivers, and on-board processing of data. This system was deployed on the CHARM-II rocket, resulting in measurements of the polarization of fine structures in auroral roar emissions.

  15. Temperature controlling system based on FISH probe hybridization facility%基于FISH探针杂交设备的温度控制系统

    Institute of Scientific and Technical Information of China (English)

    李天庆; 张化; 张婉尧

    2015-01-01

    以玻片为基础的FISH,它的变性杂交过程完全实现自动化.FISH探针杂交仪内置一个ARM7微处理器,以控制不同温度变化,满足变性、杂交和固定温度等不同模式,可预置用按键编程进去的程序(显示屏上能指导编程),方便客户调用,提高工作效率.温度控制系统是FISH探针杂交设备的核心部分,决定了杂交仪的可靠性、稳定性及精准性.%By using FISH based on slide,automation in the degeneration process of hybrid can be achieved.Installed an internal ARM7 microprocessor,the FISH probe hybridization facility can control temperature,meet different modes such as denaturation,hybridization,fixed temperature,and so on.Procedure input by means of push-button can be preset(there are guidance on display screen)to make things easy for user,as a result,work efficiency can be improved.The temperature controlling system,which is the core of FISH probe hybridization facility and ensure its reliability,stability and accuracy.

  16. Non linear dynamic of Langmuir and electromagnetic waves in space plasmas; Dinamica nao linear de ondas de Langmuir e eletromagneticas em plasmas espaciais

    Energy Technology Data Exchange (ETDEWEB)

    Guede, Jose Ricardo Abalde

    1995-11-01

    The aim of this work is to study the nonlinear dynamics of Langmuir and electromagnetic waves in space plasmas. Firstly, the generalized Zakharov equations are derived which are used to study the hybrid parametric instability involving the generation of daughter Langmuir, electromagnetic and ion-acoustic waves induced by two counter-propagating Langmuir pump waves with different amplitudes based on a coupled dispersion relation. Secondly, starting from the generalized Zakharov equations the linear and nonlinear coupled mode theories of three-wave and four-wave parametric interactions are developed, respectively. In three-waves processes, a Langmuir wave decays into another Langmuir wave and an ion-acoustic wave (electrostatic parametric decay) or into an electromagnetic wave and an ion-acoustic wave (electromagnetic parametric decay). In four-wave (modulational) processes, the interaction involves two wave triplets: in the decay triplet a pump wave couples with a low-frequency wave to generate a Stokes wave, and in the fusion triplets: in the decay triplet a pump wave couples with a low-frequency wave to generate a Stokes wave, and in the fusion triplet the coupling of a pump wave with a low-frequency wave generate an anti-Stokes wave. These modulational processes are convective and resonant processes wherein the low-frequency modes are Eigenmodes of plasma and are known as the stimulated modulational processes. Four such processes are investigated in this thesis: two with Langmuir pump waves (electrostatic and hybrid stimulated modulation processes) and the other two with electromagnetic pump waves (stimulated modulation Brillouin scattering and electromagnetic stimulated modulation process). Applications of the theoretical results in space plasmas are discussed. In particular, it is shown that the electrostatic and electromagnetic parametric decay processes of Langmuir waves can model the generation and modulation of radio emissions and Langmuir waves in the

  17. Suprathermal Solar Wind Electrons and Langmuir Turbulence

    Science.gov (United States)

    Kim, Sunjung; Yoon, Peter H.; Choe, G. S.; moon, Y.-J.

    2016-09-01

    The steady-state model recently put forth for the solar wind electron velocity distribution function during quiet time conditions, was originally composed of three population electrons (core, halo, and superhalo) with the core remaining nonresonant with any plasma waves while the halo and superhalo separately maintained steady-state resonance with whistler- and Langmuir-frequency range fluctuations, respectively. However, a recent paper demonstrates that whistler-range fluctuations in fact have no significant contribution. The present paper represents a consummation of the model in that a self-consistent model of the suprathermal electron population, which encompasses both the halo and the superhalo, is constructed solely on the basis of the Langmuir fluctuation spectrum. Numerical solutions to steady-state particle and wave kinetic equations are obtained on the basis of an initial trial electron distribution and Langmuir wave spectrum. Such a finding offers a self-consistent explanation for the observed steady-state electron distribution in the solar wind.

  18. Extended oil spill spreading with Langmuir circulation.

    Science.gov (United States)

    Simecek-Beatty, Debra; Lehr, William J

    2017-09-15

    When spilled in the ocean, most crude oils quickly spread into a thin film that ruptures into smaller slicks distributed over a larger area. Observers have also reported the film tearing apart into streaks that eventually merge forming fewer but longer bands of floating oil. Understanding this process is important to model oil spill transport. First, slick area is calculated using a spreading model. Next, Langmuir circulation models are used to approximate the merging of oiled bands. Calculations are performed on Troll blended and Alaska North Slope crude oils and results compared with measurements from the 1990s North Sea field experiments. Langmuir circulation increases the oil area but decreases the surface coverage of oil. This work modifies existing oil spreading formulas by providing a surface area correction due to the effects of Langmuir circulation. The model's simplicity is advantageous in situations with limited data, such as emergency oil spill response. Published by Elsevier Ltd.

  19. Evidence for Langmuir Oscillations and a Low Density Cavity in the Venus Magnetotail

    Science.gov (United States)

    Ho, C. M.; Strangeway, R. J.; Russell, C. T.

    1993-01-01

    We report the discovery of Langmuir oscillations in a very low plasma density region in the Venus magnetotail. These waves are observed more often at 30 kHz, but also at 5.4 kHz indicating densities as low as 0.3/cu cm in the central tail lobe. The Langmuir probe on board the Pioneer Venus Orbiter cannot resolve such a low plasma density. We use the magnetic field strength and the assumption of total pressure balance to infer the electron temperature as a test of the Langmuir wave interpretation. By investigating the spatial distribution of this wave activity we find that the plasma cavity is ordered in a coordinate system defined by the interplanetary magnetic field and is found at either side of the central tail current sheet.

  20. A brightness exceeding simulated Langmuir limit

    Energy Technology Data Exchange (ETDEWEB)

    Nakasuji, Mamoru [2-15-11, Serigaya-chou, Kounan-ku, Yokohama-shi, Kanagawa-ken (Japan)

    2013-08-15

    When an excitation of the first lens determines a beam is parallel beam, a brightness that is 100 times higher than Langmuir limit is measured experimentally, where Langmuir limits are estimated using a simulated axial cathode current density which is simulated based on a measured emission current. The measured brightness is comparable to Langmuir limit, when the lens excitation is such that an image position is slightly shorter than a lens position. Previously measured values of brightness for cathode apical radii of curvature 20, 60, 120, 240, and 480 μm were 8.7, 5.3, 3.3, 2.4, and 3.9 times higher than their corresponding Langmuir limits, respectively, in this experiment, the lens excitation was such that the lens and the image positions were 180 mm and 400 mm, respectively. From these measured brightness for three different lens excitation conditions, it is concluded that the brightness depends on the first lens excitation. For the electron gun operated in a space charge limited condition, some of the electrons emitted from the cathode are returned to the cathode without having crossed a virtual cathode. Therefore, method that assumes a Langmuir limit defining method using a Maxwellian distribution of electron velocities may need to be revised. For the condition in which the values of the exceeding the Langmuir limit are measured, the simulated trajectories of electrons that are emitted from the cathode do not cross the optical axis at the crossover, thus the law of sines may not be valid for high brightness electron beam systems.

  1. Acceleration of Flare Protons by Langmuir Plasmons

    Institute of Scientific and Technical Information of China (English)

    李晓卿; 张航

    2002-01-01

    We analytically study the turbulent acceleration of solar protons by strong Langmuir plasmons in Cerenkov processes. It is shown that among the wave spectra with self-retained source only the Pelletier spectrum (Wk ∝ k-7/2) can result in the energy spectrum of non-relativistic protons, which gives a good fit to that observed from solarflare events. It is quite possible that strong Langmuir turbulence presents in coronal active region, with three-dimensional, isotropic and stationary spectrum proportional to k-7/2, and is responsible for the acceleration offlare protons.

  2. Langmuir wave filamentation in the kinetic regime

    CERN Document Server

    Silantyev, Denis A; Rose, Harvey A

    2016-01-01

    Nonlinear Langmuir wave in the kinetic regime $k\\lambda_D\\gtrsim0.2$ has a transverse instability, where $k$ is the wavenumber and $\\lambda_D$ is the Debye length. The nonlinear stage of that instability development leads to the filamentation of Langmuir waves. Here we study the linear stage of transverse instability of both Bernstein-Greene-Kruskal (BGK) modes and dynamically prepared BGK-like initial conditions to find the same instability growth rate suggesting the universal mechanism for the kinetic saturation of stimulated Raman scatter in laser-plasma interaction experiments. Multidimensional Vlasov simulations results are compared to the theoretical predictions.

  3. Cellular delivery of quantum dot-bound hybridization probe for detection of intracellular pre-microRNA using chitosan/poly(γ-glutamic acid complex as a carrier.

    Directory of Open Access Journals (Sweden)

    Yao Geng

    Full Text Available A quantum dot (QD-bound hybridization probe was designed for detection of intracellular pre-miRNA using chitosan (CS/poly(γ-glutamic acid (γ-PGA complex as a gene vector. The probe was prepared by assembling thiolated RNA to gold nanoparticle (Au NP via Au-S bond and then binding 3'-end amine of the RNA to the carboxy group capped on quantum dot surface. The QD-RNA-Au NP probe was assembled on the vector by mixing with aqueous γ-PGA solution and then CS solution to construct a gene delivery system for highly effective cellular uptake and delivery. After the probe was released from CS/γ-PGA complex to the cytoplasm by electrostatic repulsion at intracellular pH, it hybridized with pre-miRNA precursor as target. The formed product was then cleaved by RNase III Dicer, leading to the separation of QDs from Au NPs and fluorescence emission of QDs, which could be detected by confocal microscopic imaging to monitor the amount of the intracellular pre-miRNA precursor. The in vitro assays revealed that the QD-RNA-Au NP was a robust, sensitive and selective probe for quantitative detection of target pre-miRNA. Using MDA-MB231 and MCF-7 breast cancer cells as models, the relative amount of pre-miRNA let-7a could be successfully compared. Since the amount of miRNA is related to the progress and prognosis of cancer, this strategy could be expected to hold promising application potential in medical research and clinical diagnostics.

  4. Fluorescence Resonance Energy Transfer between organic dyes adsorbed onto nano-clay and Langmuir-Blodgett (LB) films

    Science.gov (United States)

    Hussain, Syed Arshad; Chakraborty, S.; Bhattacharjee, D.; Schoonheydt, R. A.

    2010-02-01

    In this communication we investigate two dyes N, N'-dioctadecyl thiacyanine perchlorate (NK) and octadecyl rhodamine B chloride (RhB) in Langmuir and Langmuir-Blodgett (LB) films with or with out a synthetic clay laponite. Observed changes in isotherms of RhB in absence and presence of nano-clay platelets indicate the incorporation of clay platelets onto RhB-clay hybrid films. AFM images confirm the incorporation of clay into hybrid films. FRET is observed in clay dispersion and LB films with and without clay. Efficiency of energy transfer is maximum in LB films with clay.

  5. Electron temperature and density probe for small aeronomy satellites

    Energy Technology Data Exchange (ETDEWEB)

    Oyama, K.-I. [Plasma and Space Science Center, National Cheng Kung University, Tainan, Taiwan (China); Institute of Space and Plasma Sciences, National Cheng Kung University, Tainan, Taiwan (China); International Center for Space Weather Study and education, Kyushu University, Fukuoka (Japan); Hsu, Y. W.; Jiang, G. S.; Chen, W. H.; Liu, W. T. [Plasma and Space Science Center, National Cheng Kung University, Tainan, Taiwan (China); Cheng, C. Z.; Fang, H. K. [Plasma and Space Science Center, National Cheng Kung University, Tainan, Taiwan (China); Institute of Space and Plasma Sciences, National Cheng Kung University, Tainan, Taiwan (China)

    2015-08-15

    A compact and low power consumption instrument for measuring the electron density and temperature in the ionosphere has been developed by modifying the previously developed Electron Temperature Probe (ETP). A circuit block which controls frequency of the sinusoidal signal is added to the ETP so that the instrument can measure both T{sub e} in low frequency mode and N{sub e} in high frequency mode from the floating potential shift of the electrode. The floating potential shift shows a minimum at the upper hybrid resonance frequency (f{sub UHR}). The instrument which is named “TeNeP” can be used for tiny satellites which do not have enough conductive surface area for conventional DC Langmuir probe measurements. The instrument also eliminates the serious problems associated with the contamination of satellite surface as well as the sensor electrode.

  6. Electron temperature and density probe for small aeronomy satellites

    Science.gov (United States)

    Oyama, K.-I.; Hsu, Y. W.; Jiang, G. S.; Chen, W. H.; Cheng, C. Z.; Fang, H. K.; Liu, W. T.

    2015-08-01

    A compact and low power consumption instrument for measuring the electron density and temperature in the ionosphere has been developed by modifying the previously developed Electron Temperature Probe (ETP). A circuit block which controls frequency of the sinusoidal signal is added to the ETP so that the instrument can measure both Te in low frequency mode and Ne in high frequency mode from the floating potential shift of the electrode. The floating potential shift shows a minimum at the upper hybrid resonance frequency (fUHR). The instrument which is named "TeNeP" can be used for tiny satellites which do not have enough conductive surface area for conventional DC Langmuir probe measurements. The instrument also eliminates the serious problems associated with the contamination of satellite surface as well as the sensor electrode.

  7. Discrepancy between fluorescence in situ hybridization and multiplex ligation-dependent probe amplification in orbital recurrence of uveal melanoma 26 years after enucleation.

    Science.gov (United States)

    Russo, Andrea; Rene, Cornelius; Coupland, Sarah E; Sagili, Suresh; Damato, Bertil

    2012-01-01

    Cytogenetic analysis has transformed the management of uveal melanoma in recent years and allows categorization of such tumors into low-grade tumors with a favorable prognosis and high-grade tumors that metastasize with a fatal outcome. The authors report the case of a 73-year-old man who presented with recurrent melanoma in his left socket, 26 years after enucleation for uveal melanoma. Chromosomal analysis by multiplex ligation-dependent probe amplification revealed partial loss of chromosome 3 and gains in chromosomes 6 and 8, which were missed with fluorescence in situ hybridization. The patient developed multiple liver metastases 14 months after orbital exenteration and died 8 months later. To the best of authors' knowledge, this is the first report of late recurrence of uveal melanoma after enucleation, in which multiplex ligation-dependent probe amplification chromosomal analysis has been used. The case also highlights the limitations of fluorescence in situ hybridization and the benefits of multiplex ligation-dependent probe amplification, which is more reliable at predicting survival.

  8. Langmuir and Langmuir-Blodgett films of a maleic anhydride derivative: effect of subphase divalent cations.

    Science.gov (United States)

    Martín-García, B; Velázquez, M Mercedes; Pérez-Hernández, J A; Hernández-Toro, J

    2010-09-21

    We report the study of the equilibrium and dynamic properties of Langmuir monolayers of poly(styrene-co-maleic anhydride) partial 2-buthoxyethyl ester cumene terminated polymer and the effect of the Mg(NO(3))(2) addition in the water subphase on the film properties. Results show that the polymer monolayer becomes more expanded when the electrolyte concentration in the subphase increases. Dense polymer films aggregate at the interface. The aggregates are transferred onto silicon wafers using the Langmuir-Blodgett methodology and the morphology is observed by AFM. The structure of aggregates depends on the subphase composition of the Langmuir film transferred onto the silicon wafer.

  9. THz radiation by beating Langmuir waves

    CERN Document Server

    Son, S; Park, J Y

    2013-01-01

    An intense terahertz (THz) radiation generated by the beating of two Langmuir waves, which are excited by the forward Raman scattering, is analyzed theoretically. The radiation energy per shot can be as high as 0.1 J, with the duration of 10 pico-second. Appropriate plasma density and the laser characteristics are examined.

  10. Observations of Langmuir Circulation From FLIP

    Science.gov (United States)

    Smith, J. A.

    2002-12-01

    Langmuir circulation has significance across the marine disciplines. Enhanced deepening and inhibited re-stratification can alter the surface temperature and hence net air-sea exchanges. Organization of bubbles into windrows introduces dramatic sound speed variability and also affects air/sea gas fluxes. Organization of seaweed and plankton affects marine life, including pelagic fisheries. Finally, dispersal by Langmuir circulation is a major component in models for oil-spill tracking and for search-and-rescue operations. To get an adequate picture of the forcing and response of Langmuir circulation (and the wind-mixed layer in general), the observations needed include windstress, directional waves, wave breaking, heat and moisture fluxes, stratification (temperature and salinity profiles), velocity profiles across the mixed layer and thermocline, spacing and orientation of windrows, and a measure of the strength of the circulation (e.g., surface rms velocities). These measurements span both the air/sea interface and the thermocline, and must be maintained continuously for many days to span storms and daily, tidal, and inertial cycles. In addition, the total power requirements exceed that comfortably supplied by batteries or local generation by wind or solar energy. It appears that FLIP is uniquely qualified as a platform from which the required range of measurements may all be made. Findings concerning the evolution and dynamics of Langmuir circulation that were facilitated by FLIP are reviewed and summarized, with emphasis on observations from 1990, 1995, and 2002.

  11. Langmuir Turbulence: Proposal for a Closure

    DEFF Research Database (Denmark)

    Dysthe, K. B.; Espedal, M. S.; Pécseli, Hans

    1986-01-01

    The Wigner formalism is applied to the standard equations for weakly nonlinear Langmuire waves. On the basis of this formulation, a closed set of equations is obtained to describe the statistical evolution of the average field intensity and the intensity correlation function. The analysis allows...

  12. Structure of binary mixed polymer Langmuir layers

    NARCIS (Netherlands)

    Bernardini, C.

    2012-01-01

    The possibility of preparing 2D stable emulsions through mixing of homopolymers in a Langmuir monolayer is the core topic of this thesis. While colloid science has achieved well established results in the study of bulk dispersed systems, accounts on properties of mixed monomolecular films are fewer,

  13. Structure of binary mixed polymer Langmuir layers

    NARCIS (Netherlands)

    Bernardini, C.

    2012-01-01

    The possibility of preparing 2D stable emulsions through mixing of homopolymers in a Langmuir monolayer is the core topic of this thesis. While colloid science has achieved well established results in the study of bulk dispersed systems, accounts on properties of mixed monomolecular films are fewer,

  14. Hybridization-Based Detection of Helicobacter pylori at Human Body Temperature Using Advanced Locked Nucleic Acid (LNA) Probes

    DEFF Research Database (Denmark)

    Fontenete, Sílvia; Guimarães, Nuno; Leite, Marina

    2013-01-01

    the possibility of developing a variant of fluorescence in situ hybridization (FISH), named fluorescence in vivo hybridization (FIVH), for the detection of Helicobacter pylori. Using oligonucleotide variations comprising locked nucleic acids (LNA) and 2'-O-methyl RNAs (2'OMe) with two types of backbone linkages...

  15. Quantifying filamentous microorganisms in activated sludge before, during, and after an incident of foaming by oligonucleotide probe hybridizations and antibody staining.

    Science.gov (United States)

    Oerther, D B; de los Reyes, F L; de los Reyes, M F; Raskin, L

    2001-10-01

    Quantitative oligonucleotide probe hybridizations, immunostaining, and a simple foaming potential test were used to follow an incident of seasonal filamentous foaming at the Urbana-Champaign Sanitary District, Northeast Wastewater Treatment Plant. A positive correlation was observed between an increase in foaming potential and the appearance of foam on the surfaces of aeration basins and secondary clarifiers. In addition, during the occurrence of foaming, the mass and activity of Gordonia spp. increased as measured by fluorescence in situ hybridization, antibody staining, and quantitative membrane hybridization of RNA extracts. An increase in Gordonia spp. rRNA levels from 0.25 to 1.4% of total rRNA was observed using quantitative membrane hybridizations, whereas during the same period, the fraction of mixed liquor volatile suspended solids attributed to Gordonia spp. increased from 4% to more than 32% of the total mixed liquor volatile suspended solids. These results indicate that both the activity and biomass level of Gordonia spp. in activated sludge increased relative to the activity aid the biomass level of the complete microbial community during a seasonal occurrence of filamentous foaming. Thus, Gordonia spp. may represent a numerically dominant but metabolically limited fraction of the total biomass, and the role of Gordonia spp. in filamentous foaming may be linked more tightly to the physical presence of filamentous microorganisms than to the metabolic activity of the cells.

  16. Detection of Listeria monocytogenes by direct colony hybridization on hydrophobic grid-membrane filters by using a chromogen-labeled DNA probe.

    Science.gov (United States)

    Peterkin, P I; Idziak, E S; Sharpe, A N

    1991-02-01

    A DNA probe specific for Listeria monocytogenes was isolated from a beta-hemolytic recombinant clone of an L. monocytogenes gene bank. It was labeled with horseradish peroxidase and used in a direct colony hybridization method on hydrophobic grid-membrane filters for the detection of the organism. Following color development of the chromogen, a commercial counter (HGMF Interpreter) was able to detect and count the organisms electronically. The method gave a positive reaction with 70 L. monocytogenes strains, while showing a negative reaction with 10 strains of other Listeria spp. and with 20 organisms of other genera.

  17. Split-probe hybrid femtosecond/picosecond rotational CARS for time-domain measurement of S-branch Raman linewidths within a single laser shot.

    Science.gov (United States)

    Patterson, Brian D; Gao, Yi; Seeger, Thomas; Kliewer, Christopher J

    2013-11-15

    We introduce a multiplex technique for the single-laser-shot determination of S-branch Raman linewidths with high accuracy and precision by implementing hybrid femtosecond (fs)/picosecond (ps) rotational coherent anti-Stokes Raman spectroscopy (CARS) with multiple spatially and temporally separated probe beams derived from a single laser pulse. The probe beams scatter from the rotational coherence driven by the fs pump and Stokes pulses at four different probe pulse delay times spanning 360 ps, thereby mapping collisional coherence dephasing in time for the populated rotational levels. The probe beams scatter at different folded BOXCARS angles, yielding spatially separated CARS signals which are collected simultaneously on the charge coupled device camera. The technique yields a single-shot standard deviation (1σ) of less than 3.5% in the determination of Raman linewidths and the average linewidth values obtained for N(2) are within 1% of those previously reported. The presented technique opens the possibility for correcting CARS spectra for time-varying collisional environments in operando.

  18. Nano dimensional hybrid organo-clay Langmuir-Blodgett films

    OpenAIRE

    Hussain, Syed Arshad; Chakraborty, S.; Bhattacharjee, D.

    2014-01-01

    Clay mineral particles are interesting nanosized building blocks due to their high aspect ratio and the chemical properties. The main interest in this nanosized building blocks results essentially from the colloidal size and the permanent structural charge of the particles. Smectites or swelling clay minerals are naturally occurring nanomaterials that can be fully delaminated to elementary clay mineral platelets in dilute aqueous dispersion. This dilute aqueous smectite suspensions are well s...

  19. Detection of oligonucleotide hybridization on a single microparticle by time-resolved fluorometry: hybridization assays on polymer particles obtained by direct solid phase assembly of the oligonucleotide probes.

    Science.gov (United States)

    Hakala, H; Heinonen, P; Iitiä, A; Lönnberg, H

    1997-01-01

    Oligodeoxyribonucleotides were assembled by conventional phosphoramidite chemistry on uniformly sized (50 microns) porous glycidyl methacrylate/ethylene dimethacrylate (SINTEF) and compact polystyrene (Dynosphere) particles, the aminoalkyl side chains of which were further derivatized with DMTrO-acetyl groups. The linker was completely resistant toward ammonolytic deprotection of the base moieties. The quality of oligonucleotides was assessed by repeating the synthesis on the same particles derivatized with a cleavable ester linker. The ability of the oligonucleotide-coated particles to bind complementary sequences via hybridization was examined by following the attachment of oligonucleotides bearing a photoluminescent europium(III) chelate to the particles. The fluorescence emission was measured directly on a single particle. The effects of the following factors on the kinetics and efficiency of hybridization were studied: number of particles in a given volume of the assay solution, loading of oligonucleotide on the particle, concentration of the target oligonucleotide in solution, length of the hybridizing sequence, presence of noncomplementary sequences, and ionic strength. The fluorescence signal measured on a single particle after hybridization was observed to be proportional to the concentration of the target oligonucleotide in solution over a concentration range of 5 orders of magnitude.

  20. Diagnosis of canine visceral leishmaniasis with radiolabelled probes: comparison of the kDNA PCR-hybridization with three molecular methods in different clinical samples

    Energy Technology Data Exchange (ETDEWEB)

    Ferreira, Aline Leandra C.; Ferreira, Sidney A.; Carregal, Virginia M.; Andrade, Antero Silva R., E-mail: antero@cdtn.br [Centro de Desenvolvimento da Tecnologia Nuclear (CDTN/CNEN-MG), Belo Horizonte, MG (Brazil). Lab. de Radiobiologia; Melo, Maria N., E-mail: melo@icb.ufmg.br [Departamento de Parasitologia. Instituto de Ciencias Biologicas. Universidade Federal de Minas Gerais, Belo Horizonte, MG (Brazil)

    2011-07-01

    Leishmania (Leishmania) chagasi is responsible for visceral leishmaniasis (VL) in Brazil and the dog is the main domestic reservoir. Disease control is based on the elimination of infected animals and the use of a sensitive and specific diagnostic test is necessary. The Brazilian VL control program emphasizes serologic surveys, mainly using the enzyme-linked immunosorbent assay (ELISA) and the immunofluorescence antibody test (IFAT), followed by the elimination of the seropositive dogs. However, these techniques present limitations in terms of sensitivity and specificity. The Polymerase Chain Reaction (PCR) associated to hybridization with DNA probes labeled with {sup 32}P has been recognized as a valuable tool for Leishmania identification. In this study, the sensitivity of kDNA PCR hybridization method was compared with three other molecular methods: Internal Transcribed Spacer 1 Nested PCR (ITS-1nPCR), Leishmania nested PCR (LnPCR) and Seminested kDNA PCR (kDNA snPCR). The comparison was performed in different clinical specimens: conjunctival swab, skin, blood and bone marrow. A group of thirty symptomatic dogs, positive in the parasitological and serological tests, was used. When. The techniques targeting kDNA mini-circles (kDNA snPCR and KDNA PCR-hybridization) showed the worst result for blood samples. The KDNA-PCR hybridization showed the best sensitivity for conjunctival swab. By comparing the samples on the basis of positivity obtained by the sum of all methods, the blood showed the worst outcome (71/120).The bone marrow showed the highest positivity (106/120), followed by conjunctival swab (100/120) and skin (89/120). Since the bone marrow samples are unsuitable for routine epidemiological surveys, the conjunctival swab was recommended because it allows high sensitivity, especially when associated with kDNA PCR hybridization method, and is a noninvasive sampling method. (author)

  1. A hydrophobic dye-encapsulated nano-hybrid as an efficient fluorescent probe for living cell imaging.

    Science.gov (United States)

    Chang, Shu; Wu, Xumeng; Li, Yongsheng; Niu, Dechao; Ma, Zhi; Zhao, Wenru; Gu, Jinlou; Dong, Wenjie; Ding, Feng; Zhu, Weihong; Shi, Jianlin

    2012-07-01

    Water-soluble hydrophobic-dye@nano-hybrids (DPN@NHs) with extraordinarily enhanced fluorescent performance were fabricated by encapsulating the hydrophobic dye molecules into the core of the hybrid nanospheres based on the self-assembly of amphiphilic block copolymers followed by shell cross-linking using 3-mercaptopropyltrimethoxy-silane. The DPN@NHs are 50 nm in size, are monodispersed in aqueous solution and have a quantum yield enhanced by 30 times.

  2. Langmuir-Blodgett Films of Graphene Derivatives

    DEFF Research Database (Denmark)

    Petersen, Søren Vermehren

    . Solution processable graphene in the form of chemically derived graphene has been synthesized through the modified Hummers method with subsequent reduction into reduced graphene oxide with hydrazine. The completeness of oxidation, the effect of the refinement steps and the reduction of the graphene oxide...... were investigated using the Langmuir-Blodgett technique. It was found that reduction of graphene oxide back into graphene did not seem possible in solution, while still maintaining its monolayer character. Instead, an alternative route for graphene synthesis was then designed. This involved...... immobilization of the monolayered graphene oxide via the Langmuir-Blodgett deposition technique prior to a three step reduction scheme involving hydrazine reduc-tion, sulfuric acid de-oxygenation, and thermal annealing. This method resulted in wrin-kle-free reduced graphene oxide with a negligible oxygen content...

  3. Rapid Genotyping of the Human Renin (REN Gene by the LightCycler® Instrument: Identification of Unexpected Nucleotide Substitutions within the Selected Hybridization Probe Area

    Directory of Open Access Journals (Sweden)

    Line Wee

    2010-01-01

    Full Text Available Preeclampsia is a serious disorder affecting nearly 3% of all in the Western world. It is associated with hypertension and proteinuria, and several lines of evidence suggest that the renin-angiotensin system (RAS may be involved in the development of hypertension at different stages of a preeclamptic pregnancy. In this study, we developed rapid genotyping assays on the LightCycler® instrument to allow the detection of genetic variants in the renin gene (REN that may predispose to preeclampsia. The method is based on real-time PCR and allele-specific hybridization probes, followed by fluorescent melting curve analysis to expose a change in melting temperature (Tm. Ninety-two mother-father-child triads (n=276 from preeclamptic pregnancies were genotyped for three haplotype-tagging single nucleotide polymorphisms (htSNPs in REN. All three htSNPs (rs5705, rs1464816 and rs3795575 were successfully genotyped. Furthermore, two unexpected nucleotide substitutions (rs11571084 and rs61757041 were identified within the selected hybridization probe area of rs1464816 and rs3795575 due to aberrant melting peaks. In conclusion, genotyping on the LightCycler® instrument proved to be rapid and highly reproducible. The ability to uncover additional nucleotide substitutions is particularly important in that it allows the identification of potentially etiological variants that might otherwise be overlooked by other genotyping methods.

  4. The Interaction of the Solar Wind with Solar Probe Plus - 3D Hybrid Simulation. Report 1; The Study for the Distance 4.5Rs

    Science.gov (United States)

    Lipatov, Alexander S.; Sittler, Edward C.; Hartle, Richard E.; Cooper, John F.

    2010-01-01

    Our report devotes a 3D numerical hybrid model of the interaction of the solar wind with the Solar Probe spacecraft. The Solar Probe Plus (SPP) model includes 3 main parts, namely, a non-conducting heat shield, a support system, and cylindrical section or spacecraft bus that contains the particle analysis devices and antenna. One observes an excitation of the low frequency Alfven and whistler type wave directed by the magnetic field with an amplitude of about (0.06-0.6) V/m. The compression waves and the jumps in an electric field with an amplitude of about (0.15-0.7) V/m were also observed. The wave amplitudes are comparable to or greater than previously estimated max wave amplitudes that SPP is expected to measure. The results of our hybrid simulation will be useful for understanding the plasma environment near the SPP spacecraft at the distance 4.5 Rs. Future simulation will take into account the charging of the spacecraft, the charge separation effects, an outgassing from heat shield, a photoionization and an electron impact ionization effects near the spacecraft.

  5. Collapse of Langmuir solitons in inhomogeneous plasmas

    CERN Document Server

    Chen, Y A; Nishida, Y; Cheng, C Z

    2016-01-01

    Propagation of Langmuir solitons in inhomogeneous plasmas is investigated numerically. Through numerical simulation solving Zakharov equations, the solitons are accelerated toward the low density side. As a consequence, isolated cavities moving at ion sound velocities are emitted. When the acceleration is further increased, solitons collapse and the cavities separate into two lumps released at ion sound velocities. The threshold is estimated by an analogy between the soliton and a particle overcoming the self-generated potential well.

  6. Positively charged polymer brush-functionalized filter paper for DNA sequence determination following Dot blot hybridization employing a pyrrolidinyl peptide nucleic acid probe.

    Science.gov (United States)

    Laopa, Praethong S; Vilaivan, Tirayut; Hoven, Voravee P

    2013-01-07

    As inspired by the Dot blot analysis, a well known technique in molecular biology and genetics for detecting biomolecules, a new paper-based platform for colorimetric detection of specific DNA sequences employing peptide nucleic acid (PNA) as a probe has been developed. In this particular study, a pyrrolidinyl PNA bearing a conformationally rigid d-prolyl-2-aminocyclopentanecarboxylic acid backbone (acpcPNA) was used as a probe. The filter paper was modified to be positively charged with grafted polymer brushes of quaternized poly(dimethylamino)ethyl methacrylate (QPDMAEMA) prepared by surface-initiated polymerization of 2-(dimethylamino)ethyl methacrylate from the filter paper via ARGET ATRP followed by quaternization with methyl iodide. Following the Dot blot format, a DNA target was first immobilized via electrostatic interactions between the positive charges of the QPDMAEMA brushes and negative charges of the phosphate backbone of DNA. Upon hybridization with the biotinylated pyrrolidinyl peptide nucleic acid (b-PNA) probe, the immobilized DNA can be detected by naked eye observation of the yellow product generated by the enzymatic reaction employing HRP-labeled streptavidin. It has been demonstrated that this newly developed assay was capable of discriminating between complementary and single base mismatch targets at a detection limit of at least 10 fmol. In addition, the QPDMAEMA-grafted filter paper exhibited a superior performance to the commercial membranes, namely Nylon 66 and nitrocellulose.

  7. Bulk organisation and alignment in Langmuir and Langmuir-Blodgett films of tetrachloroperylene tetracarboxylic acid esters

    Science.gov (United States)

    Modlińska, Anna; Filipowicz, Marek; Martyński, Tomasz

    2016-12-01

    Perylene derivatives with chlorine atoms attached at the bay position to the dye core are expected to affect organisation and tendency to aggregation in Langmuir and Langmuir-Blodgett (LB) films. Therefore, newly synthesized core-twisted homologous series of tetrachloroperylene tetracarboxylic acid esters with n = 1,4,5,6,9 carbon atoms in terminal alkyl chains were studied. Phase transitions and crystalline structures were specified by differential scanning calorimetry (DSC) and single crystal X-ray diffraction (XRD), respectively. Intermolecular interactions and organisation of the dyes in monomolecular films were investigated by means of Brewster angle microscope (BAM), UV-Vis absorption and emission spectroscopy, fluorescence microscopy and atomic force microscopy (AFM). The dyes investigated do not form thermotropic mesogenic phases in bulk. The crystalline triclinic elementary cell with P-1 symmetry is revealed from X-ray experiments. In Langmuir and Langmuir-Blodgett films molecular tilted head-on alignment is postulated. Spectroscopic research confirmed by AFM texture images of the LB films show that in the Langmuir and LB films the dyes, depending on length of terminal chains, have a tendency to create H or I molecular aggregates. The impact of the twisted core on the molecular behavior in a bulk and thin films is discussed.

  8. Graphene Oxide-Polymer Composite Langmuir Films Constructed by Interfacial Thiol-Ene Photopolymerization

    Science.gov (United States)

    Luo, Xiaona; Ma, Kai; Jiao, Tifeng; Xing, Ruirui; Zhang, Lexin; Zhou, Jingxin; Li, Bingbing

    2017-02-01

    The effective synthesis and self-assembly of graphene oxide (GO) nanocomposites are of key importance for a broad range of nanomaterial applications. In this work, a one-step chemical strategy is presented to synthesize stable GO-polymer Langmuir composite films by interfacial thiol-ene photopolymerization at room temperature, without use of any crosslinking agents and stabilizing agents. It is discovered that photopolymerization reaction between thiol groups modified GO sheets and ene in polymer molecules is critically responsible for the formation of the composite Langmuir films. The film formed by Langmuir assembly of such GO-polymer composite films shows potential to improve the mechanical and chemical properties and promotes the design of various GO-based nanocomposites. Thus, the GO-polymer composite Langmuir films synthesized by interfacial thiol-ene photopolymerization with such a straightforward and clean manner, provide new alternatives for developing chemically modified GO-based hybrid self-assembled films and nanomaterials towards a range of soft matter and graphene applications.

  9. Langmuir wave electric fields induced by electron beams in the heliosphere

    Science.gov (United States)

    Reid, Hamish A. S.; Kontar, Eduard P.

    2017-01-01

    Solar electron beams responsible for type III radio emission generate Langmuir waves as they propagate out from the Sun. The Langmuir waves are observed via in situ electric field measurements. These Langmuir waves are not smoothly distributed but occur in discrete clumps, commonly attributed to the turbulent nature of the solar wind electron density. Exactly how the density turbulence modulates the Langmuir wave electric fields is understood only qualitatively. Using weak turbulence simulations, we investigate how solar wind density turbulence changes the probability distribution functions, mean value and variance of the beam-driven electric field distributions. Simulations show rather complicated forms of the distribution that are dependent upon how the electric fields are sampled. Generally the higher magnitude of density fluctuations reduce the mean and increase the variance of the distribution in a consistent manor to the predictions from resonance broadening by density fluctuations. We also demonstrate how the properties of the electric field distribution should vary radially from the Sun to the Earth and provide a numerical prediction for the in situ measurements of the upcoming Solar Orbiter and Solar Probe Plus spacecraft.

  10. Hybridization chain reaction-based colorimetric aptasensor of adenosine 5'-triphosphate on unmodified gold nanoparticles and two label-free hairpin probes.

    Science.gov (United States)

    Gao, Zhuangqiang; Qiu, Zhenli; Lu, Minghua; Shu, Jian; Tang, Dianping

    2017-03-15

    This work designs a new label-free aptasensor for the colorimetric determination of small molecules (adenosine 5'-triphosphate, ATP) by using visible gold nanoparticles as the signal-generation tags, based on target-triggered hybridization chain reaction (HCR) between two hairpin DNA probes. The assay is carried out referring to the change in the color/absorbance by salt-induced aggregation of gold nanoparticles after the interaction with hairpins, gold nanoparticles and ATP. To construct such an assay system, two hairpin DNA probes with a short single-stranded DNA at the sticky end are utilized for interaction with gold nanoparticles. In the absence of target ATP, the hairpin DNA probes can prevent gold nanoparticles from the salt-induced aggregation through the interaction of the single-stranded DNA at the sticky end with gold nanoparticles. Upon target ATP introduction, the aptamer-based hairpin probe is opened to expose a new sticky end for the strand-displacement reaction with another complementary hairpin, thus resulting in the decreasing single-stranded DNA because of the consumption of hairpins. In this case, gold nanoparticles are uncovered owing to the formation of double-stranded DNA, which causes their aggregation upon addition of the salt, thereby leading to the change in the red-to-blue color. Under the optimal conditions, the HCR-based colorimetric assay presents good visible color or absorbance responses for the determination of target ATP at a concentration as low as 1.0nM. Importantly, the methodology can be further extended to quantitatively or qualitatively monitor other small molecules or biotoxins by changing the sequence of the corresponding aptamer.

  11. Implementation and verification of a four-probe motion error measurement system for a large-scale roll lathe used in hybrid manufacturing

    Science.gov (United States)

    Chen, Yuan-Liu; Niu, Zengyuan; Matsuura, Daiki; Lee, Jung Chul; Shimizu, Yuki; Gao, Wei; Oh, Jeong Seok; Park, Chun Hong

    2017-10-01

    In this paper, a four-probe measurement system is implemented and verified for the carriage slide motion error measurement of a large-scale roll lathe used in hybrid manufacturing where a laser machining probe and a diamond cutting tool are placed on two sides of a roll workpiece for manufacturing. The motion error of the carriage slide of the roll lathe is composed of two straightness motion error components and two parallelism motion error components in the vertical and horizontal planes. Four displacement measurement probes, which are mounted on the carriage slide with respect to four opposing sides of the roll workpiece, are employed for the measurement. Firstly, based on the reversal technique, the four probes are moved by the carriage slide to scan the roll workpiece before and after a 180-degree rotation of the roll workpiece. Taking into consideration the fact that the machining accuracy of the lathe is influenced by not only the carriage slide motion error but also the gravity deformation of the large-scale roll workpiece due to its heavy weight, the vertical motion error is thus characterized relating to the deformed axis of the roll workpiece. The horizontal straightness motion error can also be synchronously obtained based on the reversal technique. In addition, based on an error separation algorithm, the vertical and horizontal parallelism motion error components are identified by scanning the rotating roll workpiece at the start and the end positions of the carriage slide, respectively. The feasibility and reliability of the proposed motion error measurement system are demonstrated by the experimental results and the measurement uncertainty analysis.

  12. A new route for local probing of inner interactions within a layered double hydroxide/benzene derivative hybrid material.

    Science.gov (United States)

    Fleutot, S; Dupin, J C; Baraille, I; Forano, C; Renaudin, G; Leroux, F; Gonbeau, D; Martinez, H

    2009-05-14

    This paper presents the preparation and characterization of hybrid hydrotalcite-type layered double hydroxides (Zn1-xAlx(OH)2HBSx.nH2O, with x=0.33) where HBS is the 4-phenol sulfonate, with a detailed analysis of the grafting process of this organic entity onto the host lattice. As a set of the usual techniques (XRD, TG-DT/MS, FTIR and 27Al MAS NMR) was used to characterize the hybrid materials, this work focuses on a joint study by X-ray photoelectron spectroscopy and some quantum-calculation modeling in order to highlight the nature of the interactions between the organic and the mineral sub-systems. For the as-prepared hybrid material, the main results lead to a quasi-vertical orientation of the organic molecules within the mineral sheets via H-bond stabilization. By heating the hybrid material up to 200 degrees C, the structure shrinks with the condensation of the organics; the different theoretical modeling done gives an energy-stable situation when a direct attachment of the HBS sulfonate group sets up with the mineral layers, in agreement with the recorded XPS experimental data.

  13. Probing the local environment of hybrid materials designed from ionic liquids and synthetic clay by Raman spectroscopy

    Science.gov (United States)

    Siqueira, Leonardo J. A.; Constantino, Vera R. L.; Camilo, Fernanda F.; Torresi, Roberto M.; Temperini, Marcia L. A.; Ribeiro, Mauro C. C.; Izumi, Celly M. S.

    2014-03-01

    Hybrid organic-inorganic material containing Laponite clay and ionic liquids forming cations have been prepared and characterized by FT-Raman spectroscopy, X-ray diffraction, and thermal analysis. The effect of varying the length of the alkyl side chain and conformations of cations has been investigated by using different ionic liquids based on piperidinium and imidazolium cations. The structure of the N,N-butyl-methyl-piperidinium cation and the assignment of its vibrational spectrum have been further elucidated by quantum chemistry calculations. The X-ray data indicate that the organic cations are intercalated parallel to the layers of the clay. Comparison of Raman spectra of pure ionic liquids with different anions and the resulting solid hybrid materials in which the organic cations have been intercalated into the clay characterizes the local environment experienced by the cations in the hybrid materials. The Raman spectra of hybrid materials suggest that the local environment of all confined cations, in spite of this diversity in properties, resembles the liquid state of ionic liquids with a relatively disordered structure.

  14. Specific detection of neuronal cell bodies: in situ hybridization with a biotin-labelled neurofilament cDNA probe.

    NARCIS (Netherlands)

    P. Liesi; J-P. Julien (Jean-Pierre); P. Vilja; F.G. Grosveld (Frank); L. Rechardt

    1986-01-01

    textabstractWe have used a biotinylated, 300-nucleotide cDNA probe which encodes the 68,000 MW neurofilament protein to detect neurofilament-specific mRNA in situ. The neurofilament message specifically demonstrates the neuronal cell bodies, in contrast to the usual antibody staining which detects t

  15. Preparation of graphene quantum dots based core-satellite hybrid spheres and their use as the ratiometric fluorescence probe for visual determination of mercury(II) ions

    Energy Technology Data Exchange (ETDEWEB)

    Hua, Mengjuan [Key Laboratory of Modern Agriculture Equipment and Technology, School of Chemistry and Chemical Engineering, Jiangsu University, Zhenjiang 212013 (China); Wang, Chengquan [School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013 (China); Qian, Jing, E-mail: qianj@ujs.edu.cn [Key Laboratory of Modern Agriculture Equipment and Technology, School of Chemistry and Chemical Engineering, Jiangsu University, Zhenjiang 212013 (China); Wang, Kan; Yang, Zhenting; Liu, Qian; Mao, Hanping [Key Laboratory of Modern Agriculture Equipment and Technology, School of Chemistry and Chemical Engineering, Jiangsu University, Zhenjiang 212013 (China); Wang, Kun, E-mail: wangkun@ujs.edu.cn [Key Laboratory of Modern Agriculture Equipment and Technology, School of Chemistry and Chemical Engineering, Jiangsu University, Zhenjiang 212013 (China)

    2015-08-12

    We herein proposed a simple and effective strategy for preparing graphene quantum dots (GQDs)-based core-satellite hybrid spheres and further explored the feasibility of using such spheres as the ratiometric fluorescence probe for the visual determination of Hg{sup 2+}. The red-emitting CdTe QDs were firstly entrapped in the silica nanosphere to reduce their toxicity and improve their photo and chemical stabilities, thus providing a built-in correction for environmental effects, while the GQDs possessing good biocompatibility and low toxicity were electrostatic self-assembly on the silica surface acting as reaction sites. Upon exposure to the increasing contents of Hg{sup 2+}, the blue fluorescence of GQDs can be gradually quenched presumably due to facilitating nonradiative electron/hole recombination annihilation. With the embedded CdTe QDs as the internal standard, the variations of the tested solution display continuous fluorescence color changes from blue to red, which can be easily observed by the naked eye without any sophisticated instrumentations and specially equipped laboratories. This sensor exhibits high sensitivity and selectivity toward Hg{sup 2+} in a broad linear range of 10 nM–22 μM with a low detection limit of 3.3 nM (S/N = 3), much lower than the allowable Hg{sup 2+} contents in drinking water set by U.S. Environmental Protection Agency. This prototype ratiometric probe is of good simplicity, low toxicity, excellent stabilities, and thus potentially attractive for Hg{sup 2+} quantification related biological systems. - Highlights: • A facile strategy for preparing GQDs based core-satellite hybrid spheres was reported. • Such spheres can be used as the ratiometric fluorescence probe for Hg{sup 2+} detection. • The Hg{sup 2+} content can be easily distinguished by the naked eye. • The sensor shows high sensitivity and selectivity toward Hg{sup 2+} detection. • The ratiometric probe is of good simplicity, low toxicity, and

  16. Effects of Buoyancy on Langmuir Circulation

    Institute of Scientific and Technical Information of China (English)

    SONG Jun; SONG Jin-Bao

    2008-01-01

    Based on the Navier-Stokes equation,an equation describing the Langmuir circulation is derived by a perturbation method when the influences of Coriolis force and buoyancy force are both considered.The approach used in the analysis is similar to the works carried out by Craik and Leibovich[J.Fluid Mech.73 (1976)401],Leibovich [J.Fluid Mech.79 (1977) 715]and Huang[J.Fluid Mech.91 (1979) 191].Potential applications of the equation proposed are discussed in the area of Antarctic circumpolar current.

  17. Strong Langmuir turbulence in Kappa distributed plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Liu Sanqiu [Department of Physics and School of Materials Science and Engineering, Nanchang University, Nanchang, 330047 (China); Chen Hui [School of Materials Science and Engineering, Nanchang University, Nanchang 330047 (China)

    2012-01-15

    Superthermal electrons are often observed in space and astrophysics and can be appropriate modeled by the family of Kappa distribution functions. Taking the nonlinear wave-wave, wave-particle interactions and the effect of superthermal electrons into account, the strong Langmuir turbulence is investigated in kinetic regime. The modified Zakharov equations are obtained for the case of no damping or driving terms. On the basis of these equations, dynamics of collapse have been studied by the means of the general virial theorem, and the collapse thresholds which are strong modified by superthermal index {kappa}{sub e} are given.

  18. Polarization of Hemicyanine Langmuir-Blodgett Films

    Institute of Scientific and Technical Information of China (English)

    LI Shu-Hong; MU Jian; WANG Wen-Jun; MA Shi-Hong; SUN Jing-Lan; CHU Jun-Hao; WANG Wen-Cheng

    2004-01-01

    @@ The polarization dependence of electric field for hemicyanine layers deposited by the Langmuir-Blodgett (LB)technique has been measured. The experimental results show that ferroelectricity exists not only in thick films(200nm) but also in thinner films (30nm), and the remnant polarization is related to film thickness. In order to interpret the measured results, a planar rotor model was introduced, and a relation between polarization and film thickness was obtained by perturbation theory. The theory fitting agrees with experimental results well. It is confirmed that ferroelectricity in organic molecular LB films mainly arose from altering of molecular orientation.

  19. Photochemical properties in flag leaves of a super-high-yielding hybrid rice and a traditional hybrid rice (Oryza sativa L.) probed by chlorophyll a fluorescence transient.

    Science.gov (United States)

    Zhang, Meiping; Shan, YongJie; Kochian, Leon; Strasser, Reto J; Chen, GuoXiang

    2015-12-01

    Chlorophyll a fluorescence of flag leaves in a super-high-yielding hybrid rice (Oryza sativa L.) LYPJ, and a traditional hybrid rice SY63 cultivar with lower grain yield, which were grown in the field, were investigated from emergence through senescence of flag leaves. As the flag leaf matured, there was an increasing trend in photosynthetic parameters such as quantum efficiency of primary photochemistry ([Formula: see text] Po) and efficiency of electron transport from PS II to PS I (Ψ Eo). The overall photosynthetic performance index (PIABS) was significantly higher in the high-yielding LYPJ compared to SY63 during the entire reproductive stage of the plant, the same to MDA content. However, [Formula: see text] Po(=F V/F M), an indicator of the primary photochemistry of the flag leaf, did not display significant changes with leaf age and was not significantly different between the two cultivars, suggesting that PIABS is a more sensitive parameter than [Formula: see text] Po (=F V/F M) during leaf age for distinguishing between cultivars differing in yield.

  20. Detection of microRNAs in frozen tissue sections by fluorescence in situ hybridization using locked nucleicacid probes and tyramide signal amplification

    DEFF Research Database (Denmark)

    Silahtaroglu, Asli N.; Nolting, Dorrit; Andersen, Lars Dyrskjøt;

    2007-01-01

    The ability to determine spatial and temporal microRNA (miRNA) accumulation at the tissue, cell and subcellular levels is essential for understanding the biological roles of miRNAs and miRNA-associated gene regulatory networks. This protocol describes a method for fast and effective detection of mi......RNAs in frozen tissue sections using fluorescence in situ hybridization (FISH). The method combines the unique miRNA recognition properties of locked nucleic acid (LNA)-modified oligonucleotide probes with FISH using the tyramide signal amplification (TSA) technology. Although both approaches have previously...... protocol can be completed within approximately 6 h and allows miRNA detection in a wide variety of animal tissue cryosections as well as in human tumor biopsies at high cellular resolution....

  1. Detection of microRNAs in frozen tissue sections by fluorescence in situ hybridization using locked nucleicacid probes and tyramide signal amplification

    DEFF Research Database (Denmark)

    Silahtaroglu, Asli N.; Nolting, Dorrit; Andersen, Lars Dyrskjøt

    2007-01-01

    RNAs in frozen tissue sections using fluorescence in situ hybridization (FISH). The method combines the unique miRNA recognition properties of locked nucleic acid (LNA)-modified oligonucleotide probes with FISH using the tyramide signal amplification (TSA) technology. Although both approaches have previously...... been shown to increase detection sensitivity in FISH, combining these techniques into one protocol significantly decreases the time needed for miRNA detection in cryosections, while simultaneously retaining high detection sensitivity. Starting with fixation of the tissue sections, this miRNA FISH...... protocol can be completed within approximately 6 h and allows miRNA detection in a wide variety of animal tissue cryosections as well as in human tumor biopsies at high cellular resolution....

  2. Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries.

    OpenAIRE

    1996-01-01

    A new and highly effective method, termed suppression subtractive hybridization (SSH), has been developed for the generation of subtracted cDNA libraries. It is based primarily on a recently described technique called suppression PCR and combines normalization and subtraction in a single procedure. The normalization step equalizes the abundance of cDNAs within the target population and the subtraction step excludes the common sequences between the target and driver populations. In a model sys...

  3. Characterizing Electron Trapping Nonlinearity in Langmuir Waves

    CERN Document Server

    Strozzi, D J; Rose, H A; Hinkel, D E; Langdon, A B; Banks, J W

    2012-01-01

    We assess when electron trapping nonlinearities are expected to be important in Langmuir waves. The basic criterion is that the effective lifetime, t_d, of resonant electrons in the trapping region of velocity space must exceed the period of trapped motion for deeply-trapped electrons, tau_B = (n_e/delta n)^{1/2} 2pi/omega_pe. A unitless figure of merit, the "bounce number" N_B = t_d/tau_B, encapsulates this condition and allows an effective threshold amplitude for which N_B=1 to be defined. The lifetime is found for convective loss (transverse and longitudinal) out of a spatially finite Langmuir wave. Simulations of driven waves with a finite transverse profile, using the 2D-2V Vlasov code Loki, show trapping nonlinearity increases continuously with N_B for side loss, and is significant for N_B ~ 1. The lifetime due to Coulomb collisions (both electron-electron and electron-ion) is also found, with pitch-angle scattering and parallel drag and diffusion treated in a unified way. A simple way to combine convec...

  4. Group-specific small-subunit rRNA hybridization probes to characterize filamentous foaming in activated sludge systems.

    OpenAIRE

    de los Reyes, F L; Ritter, W; Raskin, L.

    1997-01-01

    Foaming in activated sludge systems is characterized by the formation of a thick, chocolate brown-colored scum that floats on the surface of aeration basins and secondary clarifiers. These viscous foams have been associated with the presence of filamentous mycolic acid-containing actinomycetes. To aid in evaluating the microbial representation in foam, we developed and characterized group-, genus-, and species-specific oligonucleotide probes targeting the small subunit rRNA of the Mycobacteri...

  5. Limits on SUSY GUTs and Defects Formation in Hybrid Inflationary Models with Three-Year Wilkinson Microwave Anisotropy Probe (WMAP) Observations

    CERN Document Server

    Fraisse, A A

    2006-01-01

    We confront the predicted effects of hybrid inflationary models on the Cosmic Microwave Background (CMB) with three years of Wilkinson Microwave Anisotropy Probe (WMAP) observations. Using model selection, we compare the ability of a simple flat power-law LCDM model to describe the data to hybrid inflationary models involving global or local cosmic strings, or global textures. We find that it is statistically impossible to distinguish between these models: they all give a similar description of the data, the maximum ratio of the various evidences involved being never higher than e^{0.1 \\pm 0.5}. We then derive the maximum contribution that topological defects can make to the CMB, and place an upper bound on the possible value of cosmic strings tension of G\\mu \\leq 2.1 \\times 10^{-7} (68% CL). Finally, we give the corresponding constraints on the strings and D-strings masses, as well as limits on the D- and F-term coupling constants (\\kappa and \\lambda) and mass scales (M and \\sqrt{\\xi}).

  6. Frequencies of complex chromosome exchange aberrations induced by 238Pu alpha-particles and detected by fluorescence in situ hybridization using single chromosome-specific probes.

    Science.gov (United States)

    Griffin, C S; Marsden, S J; Stevens, D L; Simpson, P; Savage, J R

    1995-04-01

    We undertook an analysis of chromosome-type exchange aberrations induced by alpha-particles using fluorescence in situ hybridization (FISH) with whole chromosome-specific probes for human chromosomes 1 or 4, together with a pan-centromeric probe. Contact-inhibited primary human fibroblasts (in G1) were irradiated with 0.41-1.00 Gy 238Pu alpha-particles and aberrations were analysed at the next mitosis following a single chromosome paint. Exchange and aberration painting patterns were classified according to Savage and Simpson (1994a). Of exchange aberrations, 38-47% were found to be complex derived, i.e. resulting from three or more breaks in two or more chromosomes, and the variation with dose was minimal. The class of complex aberrations most frequently observed were insertions, derived from a minimum of three breaks in two chromosomes. There was also an elevated frequency of rings. The high level of complex aberrations observed after alpha-particle irradiation indicates that, when chromosome domains are traversed by high linear energy transfer alpha-particle tracks, there is an enhanced probability of production of multiple localized double-strand breaks leading to more complicated interactions.

  7. Identification of human DNA in forensic evidence by loop-mediated isothermal amplification combined with a colorimetric gold nanoparticle hybridization probe.

    Science.gov (United States)

    Watthanapanpituck, Khanistha; Kiatpathomchai, Wansika; Chu, Eric; Panvisavas, Nathinee

    2014-11-01

    A DNA test based on loop-mediated isothermal amplification (LAMP) and colorimetric gold nanoparticle (AuNP) hybridization probe to detect the presence of human DNA in forensic evidence was developed. The LAMP primer set targeted eight regions of the human cytochrome b, and its specificity was verified against the DNA of 11 animal species, which included animals closely related to humans, such as chimpanzee and orangutan. By using the AuNP probe, sequence-specific LAMP product could be detected and the test result could be visualized through the change in color. The limit of detection was demonstrated with reproducibility to be as low as 718 fg of genomic DNA, which is equivalent to approximately 100 plasmid DNA copies containing the cytochrome b DNA target region. A simple DNA extraction method for the commonly found forensic biological samples was also devised to streamline the test process. This LAMP-AuNP human DNA test showed to be a robust, specific, and cost-effective tool for the forensic identification of human specimens without requiring sophisticated laboratory instruments.

  8. PCR associated with hybridization with DNA radioactive probes for diagnosis of asymptomatic infection caused by Leishmania Chagasi; PCR associado a hibridizacao com sondas radioativas de DNA para a identificacao de infeccao subclinica causada por Leishmania Chagasi

    Energy Technology Data Exchange (ETDEWEB)

    Andrade, Antero Silva Ribeiro de [Centro de Desenvolvimento da Tecnologia Nuclear (CDTN), Belo Horizonte, MG (Brazil); Moreno, Elizabeth Castro [Fundacao Nacional de Saude, Belo Horizonte, MG (Brazil). Coordenacao Regional de Minas Gerais; Gomes, Rosangela Fatima; Melo, Maria Norma de; Carneiro, Mariangela [Minas Gerais Univ., Belo Horizonte, MG (Brazil). Dept. de Parasitologia; Fernandes, Octavio [Fundacao Inst. Oswaldo Cruz (FIOCRUZ), Rio de Janeiro, RJ (Brazil). Dept. de Medicina Tropical

    2002-07-01

    Detection systems for diagnosis of leishmaniasis based on PCR are very promising due to their sensitivity and specificity. Secondary detection by specific radioactive DNA probes, able to type the PCR amplified products, increase the specificity and raise about tem-fold the sensitivity of the assay. The aim of this work was evaluate PCR and hybridization as a tool to identify Leishmania (Leishmania) chagasi (the specie that cause the visceral leishmaniasis in Brazil) infection in asymptomatic persons living in a endemic area. Material and Methods: A group of 226 asymptomatic individuals, living in General Carneiro (MG), was selected. Blood samples were harvested and the DNA extracted from the mononucleate cells. PCR was performed using primers addressed to the kinetoplast DNA minicircles. This protocol gives a positive reaction for all Leishmania species. The amplified products were further hybridized with cloned L.chagasi minicircles labeled with {sup 32} P. Results: were identified 111 samples PCR positive, 2 of them hybridization negative and 133 samples hybridization positive, 24 of them PCR negative. The occurrence of samples with hybridization positive and PCR negative was expected since hybridization, with DNA probes labeled with {sup 32} P, increase the sensitivity of the assay. The samples that presented positive PCR and negative hybridization were probably due the presence of other Leishmania species, likely L. (V.) braziliensis (that produce tegumentary leishmaniasis in the region), since L. (L.) chagasi cloned minicircles were used as hybridization probe. We conclude that this procedure is a valuable tool to access subclinical L. (L.) chagasi infections in epidemiological studies. (author)

  9. Signal enhancement for gene detection based on a redox reaction of [Fe(CN)(6)](4-) mediated by ferrocene at the terminal of a peptide nucleic acid as a probe with hybridization-amenable conformational flexibility.

    Science.gov (United States)

    Aoki, Hiroshi; Tao, Hiroaki

    2008-07-01

    Electrochemically enhanced DNA detection was demonstrated by utilizing the couple of a synthesized ferrocene-terminated peptide nucleic acid (PNA) with a cysteine anchor and a sacrificial electron donor [Fe(CN)(6)](4-). DNA detection sensors were prepared by modifying a gold electrode surface with a mixed monolayer of the probe PNA and 11-hydroxy-1-undecanethiol (11-HUT), protecting [Fe(CN)(6)](4-) from any unexpected redox reaction. Before hybridization, the terminal ferrocene moiety of the probe was subject to a redox reaction due to the flexible probe structure and, in the presence of [Fe(CN)(6)](4-), the observed current was amplified based on regeneration of the ferrocene moiety. Hybridization decreased the redox current of the ferrocene. This occurred because hybridization rigidified the probe structure: the ferrocene moiety was then removed from the electrode surface, and the redox reaction of [Fe(CN)(6)](4-) was again prevented. The change in the anodic current before and after hybridization was enhanced 1.75-fold by using the electron donor [Fe(CN)(6)](4-). Sequence-specific detection of the complementary target DNA was also demonstrated.

  10. Simulation of weak and strong Langmuir collapse regimes

    Energy Technology Data Exchange (ETDEWEB)

    Hadzievski, L.R.; Skoric, M.M. [Vinca Inst. of Nuclear Sciences, Belgrade (Yugoslavia); Kono, M.; Sato, T.

    1998-01-01

    In order to check the validity of the self-similar solutions and the existence of weak and strong collapse regimes, direct two dimensional simulation of the time evolution of a Langmuir soliton instability is performed. Simulation is based on the Zakharov model of strong Langmuir turbulence in a weakly magnetized plasma accounting for the full ion dynamics. For parameters considered, agreement with self-similar dynamics of the weak collapse type is found with no evidence of the strong Langmuir collapse. (author)

  11. Low frequency magnetic signals associated with Langmuir waves

    Science.gov (United States)

    Kellogg, Paul J.; Goetz, K.; Lin, N.; Monson, S. J.; Balogh, A.; Forsyth, R. J.; Stone, R. G.

    1992-01-01

    With the URAP experiment on Ulysses, low frequency signals with a magnetic component in close time correlation with electrostatic Langmuir waves at the plasma frequency are observed. In most, if not all, of these cases, the Langmuir waves are part of a Type III solar burst. This effect is investigated and it is shown that the low frequency waves are in the whistler mode and are most likely due to nonlinear effects involving Langmuir waves.

  12. A scanning probe-based pick-and-place procedure for assembly of integrated quantum optical hybrid devices

    CERN Document Server

    Schell, Andreas W; Schröder, Tim; Wolters, Janik; Aichele, Thomas; Benson, Oliver

    2011-01-01

    Integrated quantum optical hybrid devices consist of fundamental constituents such as single emitters and tailored photonic nanostructures. A reliable fabrication method requires the controlled deposition of active nanoparticles on arbitrary nanostructures with highest precision. Here, we describe an easily adaptable technique that employs picking and placing of nanoparticles with an atomic force microscope combined with a confocal setup. In this way, both the topography and the optical response can be monitored simultaneously before and after the assembly. The technique can be applied to arbitrary particles. Here, we focus on nanodiamonds containing single nitrogen vacancy centers, which are particularly interesting for quantum optical experiments on the single photon and single emitter level.

  13. Four dimensional hybrid ultrasound and optoacoustic imaging via passive element optical excitation in a hand-held probe

    Energy Technology Data Exchange (ETDEWEB)

    Fehm, Thomas Felix; Razansky, Daniel, E-mail: dr@tum.de [Institute for Biological and Medical Imaging (IBMI), Helmholtz Zentrum München, Neuherberg (Germany); Faculty of Medicine, Technische Universität München, Munich (Germany); Deán-Ben, Xosé Luís [Institute for Biological and Medical Imaging (IBMI), Helmholtz Zentrum München, Neuherberg (Germany)

    2014-10-27

    Ultrasonography and optoacoustic imaging share powerful advantages related to the natural aptitude for real-time image rendering with high resolution, the hand-held operation, and lack of ionizing radiation. The two methods also possess very different yet highly complementary advantages of the mechanical and optical contrast in living tissues. Nonetheless, efficient integration of these modalities remains challenging owing to the fundamental differences in the underlying physical contrast, optimal signal acquisition, and image reconstruction approaches. We report on a method for hybrid acquisition and reconstruction of three-dimensional pulse-echo ultrasound and optoacoustic images in real time based on passive ultrasound generation with an optical absorber, thus avoiding the hardware complexity of active ultrasound generation. In this way, complete hybrid datasets are generated with a single laser interrogation pulse, resulting in simultaneous rendering of ultrasound and optoacoustic images at an unprecedented rate of 10 volumetric frames per second. Performance is subsequently showcased in phantom experiments and in-vivo measurements from a healthy human volunteer, confirming general clinical applicability of the method.

  14. Focused upon hybridization: rapid and high sensitivity detection of DNA using isotachophoresis and peptide nucleic acid probes.

    Science.gov (United States)

    Ostromohov, Nadya; Schwartz, Ortal; Bercovici, Moran

    2015-09-15

    We present a novel assay for rapid and high sensitivity detection of nucleic acids without amplification. Utilizing the neutral backbone of peptide nucleic acids (PNA), our method is based on the design of low electrophoretic mobility PNA probes, which do not focus under isotachophoresis (ITP) unless bound to their target sequence. Thus, background noise associated with free probes is entirely eliminated, significantly improving the signal-to-noise ratio while maintaining a simple single-step assay requiring no amplification steps. We provide a detailed analytical model and experimentally demonstrate the ability to detect targets as short as 17 nucleotides (nt) and a limit of detection of 100 fM with a dynamic range of 5 decades. We also demonstrate that the assay can be successfully implemented for detection of DNA in human serum without loss of signal. The assay requires 15 min to complete, and it could potentially be used in applications where rapid and highly sensitive amplification-free detection of nucleic acids is desired.

  15. Langmuir Blodgett multilayers and related nanostructures

    Indian Academy of Sciences (India)

    S S Major; S S Talwar; R S Srinivasa

    2006-07-01

    Langmuir Blodgett (LB) process is an important route to the development of organized molecular layered structures of a variety of organic molecules with suitably designed architecture and functionality. LB multilayers have also been used as templates and precursors to develop nano-structured thin films. In this article, studies on the molecular packing and three-dimensional structure of prototypic cadmium arachidate (CdA), zinc arachidate (ZnA) and mixed CdA–ZnA LB multilayers are presented. The formation of semiconducting nano-clusters of CdS, ZnS and CdZn1−S alloys within the organic multilayer matrix, using arachidate LB multilayers as precursors is also discussed.

  16. Diacetylene mixed Langmuir monolayers for interfacial polymerization.

    Science.gov (United States)

    Ariza-Carmona, Luisa; Rubia-Payá, Carlos; García-Espejo, G; Martín-Romero, María T; Giner-Casares, Juan J; Camacho, Luis

    2015-05-19

    Polydiacetylene (PDA) and its derivatives are promising materials for applications in a vast number of fields, from organic electronics to biosensing. PDA is obtained through polymerization of diacetylene (DA) monomers, typically using UV irradiation. DA polymerization is a 1-4 addition reaction with both initiation and growth steps with topochemical control, leading to the "blue" polymer form as primary reaction product in bulk and at interfaces. Herein, the diacetylene monomer 10,12-pentacosadiynoic acid (DA) and the amphiphilic cationic N,N'-dioctadecylthiapentacarbocyanine (OTCC) have been used to build a mixed Langmuir monolayer. The presence of OTCC imposes a monolayer supramolecular structure instead of the typical trilayer of pure DA. Surface pressure, Brewster angle microscopy, and UV-vis reflection spectroscopy measurements, as well as computer simulations, have been used to assess in detail the supramolecular structure of the DA:OTCC Langmuir monolayer. Our experimental results indicate that the DA and OTCC molecules are sequentially arranged, with the two OTCC alkyl chains acting as spacing diacetylene units. Despite this configuration is expected to prevent photopolymerization of DA, the polymerization takes place without phase segregation, thus exclusively leading to the red polydiacetylene form. We propose a simple model for the initial formation of the "blue" or "red" PDA forms as a function of the relative orientation of the DA units. The structural insights and the proposed model concerning the supramolecular structure of the "blue" and "red" forms of the PDA are aimed at the understanding of the relation between the molecular and macroscopical features of PDAs.

  17. Photosystem I in Langmuir-Blodgett and Langmuir-Schaefer monolayers.

    Science.gov (United States)

    Yan, Xun; Faulkner, Christopher J; Jennings, G Kane; Cliffel, David E

    2012-10-23

    Photosystem I (PSI) is a membrane protein complex that generates photoinduced electrons and transfers them across the thylakoid membrane during photosynthesis. The PSI complex, separated from spinach leaves, was spread onto the air-water interface as a monolayer and transferred onto a gold electrode surface that was precoated with a self-assembled monolayer (SAM). The electrochemical properties of the transferred PSI monolayer, including cyclic voltammetry and photoinduced chronoamperometry, were measured. The results showed that PSI retained its bioactivity after the manipulation. Its capability of converting photoenergy into electrical potential was demonstrated by its reducing an electron acceptor, dichloroindophenol (DCIP), and by oxidizing an electron donor, sodium ascorbate (ASC). We have shown that the protein has two possible orientations at the water interface. The orientation distribution was determined by comparing the controlled reductive and oxidative photocurrents generated from Langmuir-Blodgett and Langmuir-Schaefer monolayers.

  18. Langmuir and langmuir-blodgett films of metallosupramolecular polyelectrolyte-amphiphile complexes.

    Science.gov (United States)

    Lehmann, Pit; Symietz, Christian; Brezesinski, Gerald; Krass, Henning; Kurth, Dirk G

    2005-06-21

    A detailed analysis of a metallosupramolecular polyelectrolyte-amphiphile complex (PAC) at the air-water interface is presented. Langmuir isotherms, Brewster angle microscopy, and X-ray reflectance and diffraction methods are employed to investigate the structure of the Langmuir monolayers. The PAC is self-assembled from 1,3-bis[4'-oxa-(2,2':6',2' '-terpyridinyl)]propane, iron acetate, and dihexadecyl phosphate (DHP). Spreading the PAC at the air-water interface results in a monolayer that consists of two strata. DHP forms a monolayer at the top of the interface, while the metallosupramolecular polyelectrolyte is immersed in the aqueous subphase. Both strata are coupled to each other through electrostatic interactions. The monolayers can be transferred onto solid substrates, resulting in well-ordered multilayers. Such multilayers are model systems for well-ordered metal ions in two dimensions.

  19. Mixing alternating copolymers containing fluorenyl groups with phospholipids to obtain Langmuir and Langmuir-Blodgett films.

    Science.gov (United States)

    Santos, Thays C F; Péres, Laura O; Wang, Shu H; Oliveira, Osvaldo N; Caseli, Luciano

    2010-04-20

    The control of molecular architectures may be essential to optimize materials properties for producing luminescent devices from polymers, especially in the blue region of the spectrum. In this Article, we report on the fabrication of Langmuir-Blodgett (LB) films of polyfluorene copolymers mixed with the phospholipid dimyristoyl phosphatidic acid (DMPA). The copolymers poly(9,9-dioctylfluorene)-co-phenylene (copolymer 1) and poly(9,9-dioctylfluorene)-co-quaterphenylene) (copolymer 2) were synthesized via Suzuki reaction. Copolymer 1 could not form a monolayer on its own, but it yielded stable films when mixed with DMPA. In contrast, Langmuir monolayers could be formed from either the neat copolymer 2 or when mixed with DMPA. The surface pressure and surface potential measurements, in addition to Brewster angle microscopy, indicated that DMPA provided a suitable matrix for copolymer 1 to form a stable Langmuir film, amenable to transfer as LB films, while enhancing the ability of copolymer 2 to form LB films with enhanced emission, as indicated by fluorescence spectroscopy. Because a high emission was obtained with the mixed LB films and since the molecular-level interactions between the film components can be tuned by changing the experimental conditions to allow for further optimization, one may envisage applications of these films in optical devices such as organic light-emitting diodes (OLEDs).

  20. Using Weighted Least Squares Regression for Obtaining Langmuir Sorption Constants

    Science.gov (United States)

    One of the most commonly used models for describing phosphorus (P) sorption to soils is the Langmuir model. To obtain model parameters, the Langmuir model is fit to measured sorption data using least squares regression. Least squares regression is based on several assumptions including normally dist...

  1. Evidence for Langmuir wave collapse in the interplanetary plasma

    Science.gov (United States)

    Kellogg, Paul J.; Goetz, K.; Howard, R. L.; Monson, S. J.

    1992-01-01

    With the Fast Envelope Sampler part of the URAP experiment on Ulysses, there is observed much rapidly varying structure in plasma waves in the solar wind. Extremely narrow (1 ms) structures observed together with electrostatic Langmuir waves, as well as some broader Langmuir wave packets are discussed.

  2. Landau damping of Langmuir twisted waves with kappa distributed electrons

    Energy Technology Data Exchange (ETDEWEB)

    Arshad, Kashif, E-mail: kashif.arshad.butt@gmail.com; Aman-ur-Rehman [Pakistan Institute of Engineering and Applied Sciences, P. O. Nilore, Islamabad 45650 (Pakistan); Mahmood, Shahzad [Pakistan Institute of Engineering and Applied Sciences, P. O. Nilore, Islamabad 45650 (Pakistan); Theoretical Physics Division, PINSTECH, P.O. Nilore, Islamabad 44000 (Pakistan)

    2015-11-15

    The kinetic theory of Landau damping of Langmuir twisted modes is investigated in the presence of orbital angular momentum of the helical (twisted) electric field in plasmas with kappa distributed electrons. The perturbed distribution function and helical electric field are considered to be decomposed by Laguerre-Gaussian mode function defined in cylindrical geometry. The Vlasov-Poisson equation is obtained and solved analytically to obtain the weak damping rates of the Langmuir twisted waves in a nonthermal plasma. The strong damping effects of the Langmuir twisted waves at wavelengths approaching Debye length are also obtained by using an exact numerical method and are illustrated graphically. The damping rates of the planar Langmuir waves are found to be larger than the twisted Langmuir waves in plasmas which shows opposite behavior as depicted in Fig. 3 by J. T. Mendoça [Phys. Plasmas 19, 112113 (2012)].

  3. Design of species-specific oligonucleotide probes for the detection of Bacteroides and Parabacteroides by fluorescence in situ hybridization and their application to the analysis of mouse caecal Bacteroides-Parabacteroides microbiota.

    Science.gov (United States)

    Momose, Y; Park, S H; Miyamoto, Y; Itoh, K

    2011-07-01

    To develop species-specific monitoring techniques for rapid detection of Bacteroides and Parabacteroides inhabiting the mouse intestine by fluorescence in situ hybridization. The specificity of oligonucleotide probes was evaluated by fluorescence whole-cell hybridization. Oligonucleotide probes specific for each species hybridized only with the target bacteria. Using these probes, caecal Bacteroides-Parabacteroides microbiota of conventional mice and specific pathogen-free (SPF) mice from three different breeders were analysed. It was shown that Bacteroides acidifaciens Group-1, Group-2 and Group-3 were dominant in conventional mice and SPF mice from two out of three breeders. Bacteroides vulgatus and Parabacteroides distasonis were detected in one of these two SPF breeding colonies in addition to Bact. acidifaciens. SPF mice of the remaining breeder harboured characteristic Bacteroides-Parabacteroides microbiota, consisting of Bacteroides sp. ASF519 and Bacteroides caccae. Bacteroides acidifaciens is the dominant and most typical species in the mouse Bacteroides-Parabacteroides microbiota. The Group-3 was identified as a novel group and revealed to occupy a major niche together with Bact. acidifaciens Group-1 and Group-2. The species-specific probe set developed in this study was the efficient tool for rapid detection of target bacterial groups inhabiting the mouse intestine. The results of this study provide important new information on the mouse Bacteroides-Parabacteroides community. © 2011 The Authors. Journal of Applied Microbiology © 2011 The Society for Applied Microbiology.

  4. Matrix dependent changes in metachromasy of crystal violet in Langmuir-Blodgett films

    Science.gov (United States)

    Shil, Ashis; Saha, Mitu; Debnath, Chandan; Hussain, S. A.; Bhattacharjee, D.

    2016-11-01

    This communication reports the effect of building matrices and nano clay platelets on the aggregation pattern of a water soluble cationic fluorescent dye Crystal Violet (CV) in Langmuir-Blodgett (LB) Films. When stearic acid (SA) was used as a building matrix, pressure induced changes in metachromasy was observed in the SA-CV complex LB films with a characteristic J-band formed at the longer wavelength side. On the other hand, clay incorporated hybrid LB films showed high degree of control over H-dimeric band. Isotherm characteristics, Brewster Angle Microscopic (BAM) images, UV-vis absorption and fluorescence characteristic studies were employed to investigate this result.

  5. Comparative Analysis and Approximations of Space -Charge Formation in Langmuir Electrodes Including Temperature Effects.

    Science.gov (United States)

    Valdeblànquez, Eder

    2001-10-01

    Eder Valdeblànquez,Universidad del Zulia,Apartado 4011-A 526,Maracaibo,Venezuela. ABSTRACT: In this paper by space charge effect in Langmuir probes are compared for different kind of symmetries; plane, cylindrical and spherical. A detailed analysis is performed here including temperature effects, and therefore kinetic theory is used instead of fluid equations as other authors. The strongly non-linear equations obtained here have been solved first by numerical analysis and later by approximations using Bessel functions. The accuracy of each approximaton is also discussed. Space Charge effects are important in plane geometries than in the case of cylindrical or spherical symmetries.

  6. Development of a new deep-sea hybrid Raman insertion probe and its application to the geochemistry of hydrothermal vent and cold seep fluids

    Science.gov (United States)

    Zhang, Xin; Du, Zengfeng; Zheng, Ronger; Luan, Zhendong; Qi, Fujun; Cheng, Kai; Wang, Bing; Ye, Wangquan; Liu, Xiaorui; Lian, Chao; Chen, Changan; Guo, Jinjia; Li, Ying; Yan, Jun

    2017-05-01

    Hydrothermal vent fluids, cold seep fluids, their associated chemosynthetic communities, and the biogeochemical anaerobic oxidation of methane (AOM) play very important roles in the biogeochemical sulfur and carbon cycles in the ocean. Based on our previous success developing and deploying a deep-sea sediment pore water Raman probe, we developed a new deep-sea hybrid Raman insertion probe (RiP) designed to operate at temperatures up to 450 °C that can be inserted directly into high-temperature fluids emerging from hydrothermal vents. By routinely exchanging the various tips and optics of the probe, we can analyze the geochemistry of hydrothermal vent fluids, cold seep fluids, and sediment pore water profiles (0-60 cm) in situ. The instrument ensemble also includes a new deep-sea laser Raman spectrometer in a custom-designed, 6000-m titanium pressure housing, which is powered, controlled and deployed by the remotely operated vehicle (ROV) Faxian down to a maximum water depth of 4500 m. The new RiP was deployed at the Izena Hole hydrothermal area in the middle Okinawa Trough back-arc basin; the Papua-Australia-Canada-Manus (PACManus) hydrothermal vent area in the Manus back-arc basin, Papua New Guinea; and a cold seep field at Formosa Ridge in the northern South China Sea. The Raman peaks of CO2, CH4, H2S, HS-, SO42- and S8 were obtained in situ from high-temperature hydrothermal vents (290 °C), low-temperature cold seep fluids (2 °C) and the surrounding sediment pore water. Dissolved CH4 and S8 were identified for the first time in the fluids under the lush chemosynthetic communities of the cold seep. Several sediment pore water profiles collected near the cold seep were characterized by the loss of SO42- and increased CH4, H2S and HS- peaks. Additionally, the in situ pH range of the pore water profile was between 6.95 and 7.22. Thus, the RiP system provides a very useful tool for investigating the geochemistry of hydrothermal vent and cold seep fluids.

  7. Ordering in bio-inorganic hybrid nanomaterials probed by in situ scanning transmission X-ray microscopy

    Science.gov (United States)

    Lee, Jonathan R. I.; Bagge-Hansen, Michael; Tunuguntla, Ramya; Kim, Kyunghoon; Bangar, Mangesh; Willey, Trevor M.; Tran, Ich C.; Kilcoyne, David A.; Noy, Aleksandr; van Buuren, Tony

    2015-05-01

    Phospholipid bilayer coated Si nanowires are one-dimensional (1D) composites that provide versatile bio-nanoelectronic functionality via incorporation of a wide variety of biomolecules into the phospholipid matrix. The physiochemical behaviour of the phospholipid bilayer is strongly dependent on its structure and, as a consequence, substantial modelling and experimental efforts have been directed at the structural characterization of supported bilayers and unsupported phospholipid vesicles; nonetheless, the experimental studies conducted to date have exclusively involved volume-averaged techniques, which do not allow for the assignment of spatially resolved structural variations that could critically impact the performance of the 1D phospholipid-Si NW composites. In this manuscript, we use scanning transmission X-ray microscopy (STXM) to probe bond orientation and bilayer thickness as a function of position with a spatial resolution of ~30 nm for Δ9-cis 1,2-dioleoyl-sn-glycero-3-phosphocholine layers prepared Si NWs. When coupled with small angle X-ray scattering measurements, the STXM data reveal structural motifs of the Si NWs that give rise to multi-bilayer formation and enable assignment of the orientation of specific bonds known to affect the order and rigidity of phospholipid bilayers.Phospholipid bilayer coated Si nanowires are one-dimensional (1D) composites that provide versatile bio-nanoelectronic functionality via incorporation of a wide variety of biomolecules into the phospholipid matrix. The physiochemical behaviour of the phospholipid bilayer is strongly dependent on its structure and, as a consequence, substantial modelling and experimental efforts have been directed at the structural characterization of supported bilayers and unsupported phospholipid vesicles; nonetheless, the experimental studies conducted to date have exclusively involved volume-averaged techniques, which do not allow for the assignment of spatially resolved structural

  8. Competition between Buneman and Langmuir Instabilities

    Institute of Scientific and Technical Information of China (English)

    GUO Jun; YU Bin

    2012-01-01

    The electron-ion beam instabilities are studied by one-dimensional electrostatic particle-in-cell simulation.The simulation results show that both the low-frequency Buneman mode and high-frequency Langmuir wave (LW) are excited in the nonlinear phase. The power of Buneman instability is stronger than that of the LW.The Buneman instability is firstly excited.Then the backward LW appears,which is probably excited by the particles trapped in the wave potential and moving opposite to the original beam direction.After some time,the forward LW can be found,which has a larger maximum frequency than that of the backward LW.With the decrease of the electron drift velocity,the instabilities become weaker; the LW appears to have almost equal intensities and becomes symmetric for forward and backward propagation directions. The LW can also heat the electron,so the relative drift speed cannot far exceed the electron thermal speed,which is not helpful to the development of Buneman instability.

  9. Lower hybrid frequency range waves generated by ion polarization drift due to electromagnetic ion cyclotron waves: Analysis of an event observed by the Van Allen Probe B

    Science.gov (United States)

    Khazanov, G. V.; Boardsen, S.; Krivorutsky, E. N.; Engebretson, M. J.; Sibeck, D.; Chen, S.; Breneman, A.

    2017-01-01

    We analyze a wave event that occurred near noon between 07:03 and 07:08 UT on 23 February 2014 detected by the Van Allen Probes B spacecraft, where waves in the lower hybrid frequency range (LHFR) and electromagnetic ion cyclotron (EMIC) waves are observed to be highly correlated, with Pearson correlation coefficient of 0.86. We assume that the correlation is the result of LHFR wave generation by the ions' polarization drift in the electric field of the EMIC waves. To check this assumption the drift velocities of electrons and H+, He+, and O+ ions in the measured EMIC wave electric field were modeled. Then the LHFR wave linear instantaneous growth rates for plasma with these changing drift velocities and different plasma compositions were calculated. The time distribution of these growth rates, their frequency distribution, and the frequency dependence of the ratio of the LHFR wave power spectral density (PSD) parallel and perpendicular to the ambient magnetic field to the total PSD were found. These characteristics of the growth rates were compared with the corresponding characteristics of the observed LHFR activity. Reasonable agreement between these features and the strong correlation between EMIC and LHFR energy densities support the assumption that the LHFR wave generation can be caused by the ions' polarization drift in the electric field of an EMIC wave.

  10. Detection of microRNAs in frozen tissue sections by fluorescence in situ hybridization using locked nucleic acid probes and tyramide signal amplification.

    Science.gov (United States)

    Silahtaroglu, Asli N; Nolting, Dorrit; Dyrskjøt, Lars; Berezikov, Eugene; Møller, Morten; Tommerup, Niels; Kauppinen, Sakari

    2007-01-01

    The ability to determine spatial and temporal microRNA (miRNA) accumulation at the tissue, cell and subcellular levels is essential for understanding the biological roles of miRNAs and miRNA-associated gene regulatory networks. This protocol describes a method for fast and effective detection of miRNAs in frozen tissue sections using fluorescence in situ hybridization (FISH). The method combines the unique miRNA recognition properties of locked nucleic acid (LNA)-modified oligonucleotide probes with FISH using the tyramide signal amplification (TSA) technology. Although both approaches have previously been shown to increase detection sensitivity in FISH, combining these techniques into one protocol significantly decreases the time needed for miRNA detection in cryosections, while simultaneously retaining high detection sensitivity. Starting with fixation of the tissue sections, this miRNA FISH protocol can be completed within approximately 6 h and allows miRNA detection in a wide variety of animal tissue cryosections as well as in human tumor biopsies at high cellular resolution.

  11. Hybridization Capture Using RAD Probes (hyRAD, a New Tool for Performing Genomic Analyses on Collection Specimens.

    Directory of Open Access Journals (Sweden)

    Tomasz Suchan

    Full Text Available In the recent years, many protocols aimed at reproducibly sequencing reduced-genome subsets in non-model organisms have been published. Among them, RAD-sequencing is one of the most widely used. It relies on digesting DNA with specific restriction enzymes and performing size selection on the resulting fragments. Despite its acknowledged utility, this method is of limited use with degraded DNA samples, such as those isolated from museum specimens, as these samples are less likely to harbor fragments long enough to comprise two restriction sites making possible ligation of the adapter sequences (in the case of double-digest RAD or performing size selection of the resulting fragments (in the case of single-digest RAD. Here, we address these limitations by presenting a novel method called hybridization RAD (hyRAD. In this approach, biotinylated RAD fragments, covering a random fraction of the genome, are used as baits for capturing homologous fragments from genomic shotgun sequencing libraries. This simple and cost-effective approach allows sequencing of orthologous loci even from highly degraded DNA samples, opening new avenues of research in the field of museum genomics. Not relying on the restriction site presence, it improves among-sample loci coverage. In a trial study, hyRAD allowed us to obtain a large set of orthologous loci from fresh and museum samples from a non-model butterfly species, with a high proportion of single nucleotide polymorphisms present in all eight analyzed specimens, including 58-year-old museum samples. The utility of the method was further validated using 49 museum and fresh samples of a Palearctic grasshopper species for which the spatial genetic structure was previously assessed using mtDNA amplicons. The application of the method is eventually discussed in a wider context. As it does not rely on the restriction site presence, it is therefore not sensitive to among-sample loci polymorphisms in the restriction sites

  12. Two-component model of strong Langmuir turbulence - Scalings, spectra, and statistics of Langmuir waves

    Science.gov (United States)

    Robinson, P. A.; Newman, D. L.

    1990-01-01

    A simple two-component model of strong turbulence that makes clear predictions for the scalings, spectra, and statistics of Langmuir waves is developed. Scalings of quantities such as energy density, power input, dissipation power wave collapse, and number density of collapsing objects are investigated in detail and found to agree well with model predictions. The nucleation model of wave-packet formation is strongly supported by the results. Nucleation proceeds with energy flowing from background to localized states even in the absence of a driver. Modulational instabilities play little or no role in maintaining the turbulent state when significant density nonuniformities are present.

  13. Analysis of kinetic Langmuir model. Part I: Integrated kinetic Langmuir equation (IKL): a new complete analytical solution of the Langmuir rate equation.

    Science.gov (United States)

    Marczewski, Adam W

    2010-10-05

    In the article, a new integrated kinetic Langmuir equation (IKL) is derived. The IKL equation is a simple and easy to analyze but complete analytical solution of the kinetic Langmuir model. The IKL is compared with the nth-order, mixed 1,2-order, and multiexponential kinetic equations. The impact of both equilibrium coverage θ(eq) and relative equilibrium uptake u(eq) on kinetics is explained. A newly introduced Langmuir batch equilibrium factor f(eq) that is the product of both parameters θ(eq)u(eq) is used to determine the general kinetic behavior. The analysis of the IKL equation allows us to understand fully the Langmuir kinetics and explains its relation with respect to the empirical pseudo-first-order (PFO, i.e., Lagergren), pseudo-second-order (PSO), and mixed 1,2-order kinetic equations, and it shows the conditions of their possible application based on the Langmuir model. The dependence of the initial adsorption rate on the system properties is analyzed and compared to the earlier published approximate equations.

  14. One-year monitoring of an oligonucleotide fluorescence in situ hybridization probe panel laboratory-developed test for bladder cancer detection

    Directory of Open Access Journals (Sweden)

    Tinawi-Aljundi R

    2015-04-01

    Full Text Available Rima Tinawi-Aljundi,1 Lauren King,2 Shannon T Knuth,2 Michael Gildea,2 Carrie Ng,2 Josh Kahl,2 Jacqueline Dion,2 Chris Young,2 Edward W Schervish,1 J Rene Frontera,1 Jason Hafron,1 Kenneth M Kernen,1 Robert Di Loreto,1 Joan Aurich-Costa21Michigan Institute of Urology, St Claire Shores, MI, USA; 2Cellay, Inc., Cambridge, MA, USA Background: Previously, we had developed and manufactured an oligonucleotide fluorescence in situ hybridization (OligoFISH probe panel based on the most clinically sensitive chromosomes found in a reference set of bladder carcinoma cases. The panel was clinically validated for use as a diagnostic and monitoring assay for bladder cancer, reaching 100% correlation with the results of the UroVysion test. After 1 year of using this probe panel, we present here the comparison of cytology, cystoscopy, and pathology findings to the OligoFISH probe panel results to calculate its clinical performance. Materials and methods: In order to calculate clinical performance, we compared the OligoFISH results to the cytology and cystoscopy/pathology findings for 147 initial diagnoses and 399 recurrence monitorings. Finally, we compared clinical performance to published values for the UroVysion test, including both low- and high-grade tumors. Results: Chromosomes 3, 6, 7, and 20 were highly involved in bladder carcinoma aneuploidy. At the initial diagnosis, we obtained 90.5% (95% confidence interval [CI]: 84.5%–94.7% accuracy, 96.8% sensitivity (95% CI: 91.0%–99.3%, 79.2% specificity (95% CI: 65.9%–87.8%, 89.2% positive predictive value (PPV; 95% CI: 81.5%–94.5%, and 93.3% negative predictive value (NPV; 95% CI: 81.7%–97.3%. When monitoring for recurrence, we obtained 85.2% accuracy (95% CI: 81.3%–88.5%, 82.0% sensitivity (95% CI: 76.0%–87.1%, 88.4% specificity (95% CI: 83.2%–92.5%, 87.7% PPV (95% CI: 82.1%–92.0%, and 83.0% NPV (95% CI: 77.3%–87.8%. When looking at low- and high-grade tumors, the test showed 100

  15. Experimental signatures of localization in Langmuir wave turbulence

    Energy Technology Data Exchange (ETDEWEB)

    Rose, H.A.; DuBois, D.F.; Russell, D.; Bezzerides, B.

    1988-01-01

    Features in certain laser-plasma and ionospheric experiments are identified with the basic properties of Langmuir wave turbulence. Also, a model of caviton nucleation is presented which leads to certain novel scaling predictions. 12 refs., 19 figs.

  16. Inhibition of oil plume dilution in Langmuir ocean circulation

    National Research Council Canada - National Science Library

    Yang, Di; Chamecki, Marcelo; Meneveau, Charles

    2014-01-01

    Oil spills from deep‐water blowouts rise through and interact with the ocean mixed layer and Langmuir turbulence, leading to considerable diversity of oil slick dilution patterns observed on the ocean surface...

  17. Parametric decay of wide band Langmuir wave spectra

    Science.gov (United States)

    Kono, Mitsuo; Pécseli, Hans L.

    2016-12-01

    Previous results obtained for modulational instability of a Langmuir wave spectrum are extended to account also for the Langmuir wave decay. The general model is tested by considering first the parametric decay of single-mode Langmuir waves, and also two-wave models, where several combinations are considered: one wave is modulationally unstable, another decay unstable and one where both waves are unstable with respect to decay. For the general case with continuous wave spectra it is found that distribution of the Langmuir wave energy over a wide wavenumber band reduces the decay rate when the correlation length for the spectrum becomes comparable to the wavelength of the most unstable sound wave among the possible decay products.

  18. Comparative analyses of plasma probe diagnostics techniques

    Energy Technology Data Exchange (ETDEWEB)

    Godyak, V. A. [Electrical Engineering and Computer Science Department, University of Michigan, Ann Arbor, Michigan 48109, USA and RF Plasma Consulting, Brookline, Massachusetts 02446 (United States); Alexandrovich, B. M. [Plasma Sensors, Brookline, Massachusetts 02446 (United States)

    2015-12-21

    The subject of this paper is a comparative analysis of the plasma parameters inferred from the classical Langmuir probe procedure, from different theories of the ion current to the probe, and from measured electron energy distribution function (EEDF) obtained by double differentiation of the probe characteristic. We concluded that the plasma parameters inferred from the classical Langmuir procedure can be subjected to significant inaccuracy due to the non-Maxwellian EEDF, uncertainty of locating the plasma potential, and the arbitrariness of the ion current approximation. The plasma densities derived from the ion part of the probe characteristics diverge by as much as an order of magnitude from the density calculated according to Langmuir procedure or calculated as corresponding integral of the measured EEDF. The electron temperature extracted from the ion part is always subjected to uncertainty. Such inaccuracy is attributed to modification of the EEDF for fast electrons due to inelastic electron collisions, and to deficiencies in the existing ion current theories; i.e., unrealistic assumptions about Maxwellian EEDFs, underestimation of the ion collisions and the ion ambipolar drift, and discounting deformation of the one-dimensional structure of the region perturbed by the probe. We concluded that EEDF measurement is the single reliable probe diagnostics for the basic research and industrial applications of highly non-equilibrium gas discharge plasmas. Examples of EEDF measurements point up importance of examining the probe current derivatives in real time and reiterate significance of the equipment technical characteristics, such as high energy resolution and wide dynamic range.

  19. Nonlinear Langmuir Wave Modulation in Weakly Magnetized Plasmas

    DEFF Research Database (Denmark)

    Dysthe, K. B.; Pécseli, Hans

    1978-01-01

    influence on the modulation stability of plane Langmuir waves. As in the unmagnetized case, kinetic results were found to deviate considerably from those obtained by using a fluid description for the ion dynamics. With particular attention to ionospheric phenomena, the effect is included of the spatially...... varying electron heating in the amplitude modulated Langmuir wave. For modulations travelling almost perpendicular to the magnetic field, this effect has a profound influence on a modulational instability...

  20. Tailoring bifunctional hybrid organic–inorganic nanoadsorbents by the choice of functional layer composition probed by adsorption of Cu2+ ions

    Science.gov (United States)

    Tomina, Veronika V; Melnyk, Inna V; Zub, Yuriy L; Kareiva, Aivaras; Vaclavikova, Miroslava; Kessler, Vadim G

    2017-01-01

    Spherical silica particles with bifunctional (≡Si(CH2)3NH2/≡SiCH3, ≡Si(CH2)3NH2/≡Si(CH2)2(CF2)5CF3) surface layers were produced by a one-step approach using a modified Stöber method in three-component alkoxysilane systems, resulting in greatly increased contents of functional components. The content of functional groups and thermal stability of the surface layers were analyzed by diffuse reflectance infrared Fourier transform (DRIFT) spectroscopy, and 13C and 29Si solid-state NMR spectroscopy revealing their composition and organization. The fine chemical structure of the surface in the produced hybrid adsorbent particles and the ligand distribution were further investigated by electron paramagnetic resonance (EPR) and electron spectroscopy of diffuse reflectance (ESDR) spectroscopy using Cu2+ ion coordination as a probe. The composition and structure of the emerging surface complexes were determined and used to provide an insight into the molecular structure of the surfaces. It was demonstrated that the introduction of short hydrophobic (methyl) groups improves the kinetic characteristics of the samples during the sorption of copper(II) ions and promotes fixation of aminopropyl groups on the surface of silica microspheres. The introduction of long hydrophobic (perfluoroctyl) groups changes the nature of the surface, where they are arranged in alternately hydrophobic/hydrophilic patches. This makes the aminopropyl groups huddled and less active in the sorption of metal cations. The size and aggregation/morphology of obtained particles was optimized controlling the synthesis conditions, such as concentrations of reactants, basicity of the medium, and the process temperature. PMID:28243572

  1. Tailoring bifunctional hybrid organic-inorganic nanoadsorbents by the choice of functional layer composition probed by adsorption of Cu(2+) ions.

    Science.gov (United States)

    Tomina, Veronika V; Melnyk, Inna V; Zub, Yuriy L; Kareiva, Aivaras; Vaclavikova, Miroslava; Seisenbaeva, Gulaim A; Kessler, Vadim G

    2017-01-01

    Spherical silica particles with bifunctional (≡Si(CH2)3NH2/≡SiCH3, ≡Si(CH2)3NH2/≡Si(CH2)2(CF2)5CF3) surface layers were produced by a one-step approach using a modified Stöber method in three-component alkoxysilane systems, resulting in greatly increased contents of functional components. The content of functional groups and thermal stability of the surface layers were analyzed by diffuse reflectance infrared Fourier transform (DRIFT) spectroscopy, and (13)C and (29)Si solid-state NMR spectroscopy revealing their composition and organization. The fine chemical structure of the surface in the produced hybrid adsorbent particles and the ligand distribution were further investigated by electron paramagnetic resonance (EPR) and electron spectroscopy of diffuse reflectance (ESDR) spectroscopy using Cu(2+) ion coordination as a probe. The composition and structure of the emerging surface complexes were determined and used to provide an insight into the molecular structure of the surfaces. It was demonstrated that the introduction of short hydrophobic (methyl) groups improves the kinetic characteristics of the samples during the sorption of copper(II) ions and promotes fixation of aminopropyl groups on the surface of silica microspheres. The introduction of long hydrophobic (perfluoroctyl) groups changes the nature of the surface, where they are arranged in alternately hydrophobic/hydrophilic patches. This makes the aminopropyl groups huddled and less active in the sorption of metal cations. The size and aggregation/morphology of obtained particles was optimized controlling the synthesis conditions, such as concentrations of reactants, basicity of the medium, and the process temperature.

  2. Tailoring bifunctional hybrid organic–inorganic nanoadsorbents by the choice of functional layer composition probed by adsorption of Cu2+ ions

    Directory of Open Access Journals (Sweden)

    Veronika V. Tomina

    2017-02-01

    Full Text Available Spherical silica particles with bifunctional (≡Si(CH23NH2/≡SiCH3, ≡Si(CH23NH2/≡Si(CH22(CF25CF3 surface layers were produced by a one-step approach using a modified Stöber method in three-component alkoxysilane systems, resulting in greatly increased contents of functional components. The content of functional groups and thermal stability of the surface layers were analyzed by diffuse reflectance infrared Fourier transform (DRIFT spectroscopy, and 13C and 29Si solid-state NMR spectroscopy revealing their composition and organization. The fine chemical structure of the surface in the produced hybrid adsorbent particles and the ligand distribution were further investigated by electron paramagnetic resonance (EPR and electron spectroscopy of diffuse reflectance (ESDR spectroscopy using Cu2+ ion coordination as a probe. The composition and structure of the emerging surface complexes were determined and used to provide an insight into the molecular structure of the surfaces. It was demonstrated that the introduction of short hydrophobic (methyl groups improves the kinetic characteristics of the samples during the sorption of copper(II ions and promotes fixation of aminopropyl groups on the surface of silica microspheres. The introduction of long hydrophobic (perfluoroctyl groups changes the nature of the surface, where they are arranged in alternately hydrophobic/hydrophilic patches. This makes the aminopropyl groups huddled and less active in the sorption of metal cations. The size and aggregation/morphology of obtained particles was optimized controlling the synthesis conditions, such as concentrations of reactants, basicity of the medium, and the process temperature.

  3. Langmuir and Langmuir-Blodgett films of multifunctional, amphiphilic polyethers with cholesterol moieties.

    Science.gov (United States)

    Reuter, Sascha; Hofmann, Anna M; Busse, Karsten; Frey, Holger; Kressler, Jörg

    2011-03-01

    Langmuir films of multifunctional, hydrophilic polyethers containing a hydrophobic cholesterol group (Ch) were studied by surface pressure-mean molecular area (π-mmA) measurements and Brewster angle microscopy (BAM). The polyethers were either homopolymers or diblock copolymers of linear poly(glycerol) (lPG), linear poly(glyceryl glycidyl ether) (lPGG), linear poly(ethylene glycol) (lPEG), or hyperbranched poly(glycerol) (hbPG). Surface pressure measurements revealed that the homopolymers lPG and hbPG did not stay at the water surface after spreading and solvent evaporation, in contrast to lPEG. Because of the incorporation of the Ch group in the polymer structure, stable Langmuir films were formed by Ch-lPG(n), Ch-lPGG(n), and Ch-hbPG(n). The Ch-hbPG(n), Ch-lPEG(n), Ch-lPEG(n)-b-lPG(m), Ch-lPEG(n)-b-lPGG(m), and Ch-lPEG(n)-b-hbPG(m) systems showed an extended plateau region assigned to a phase transition involving the Ch groups. Typical hierarchically ordered morphologies of the LB films on hydrophilic substrates were observed for all Ch-initiated polymers. All LB films showed that Ch of the Ch-initiated homopolymers is able to crystallize. This strong tendency of self-aggregation then triggers further dewetting effects of the respective polyether entities. Fingerlike morphologies are observed for Ch-lPEG(69), since the lPEG(69) entity is able to undergo crystallization after transfer onto the silicon substrate.

  4. From hybridization theory to microarray data analysis: performance evaluation

    Directory of Open Access Journals (Sweden)

    Berger Fabrice

    2011-12-01

    Full Text Available Abstract Background Several preprocessing methods are available for the analysis of Affymetrix Genechips arrays. The most popular algorithms analyze the measured fluorescence intensities with statistical methods. Here we focus on a novel algorithm, AffyILM, available from Bioconductor, which relies on inputs from hybridization thermodynamics and uses an extended Langmuir isotherm model to compute transcript concentrations. These concentrations are then employed in the statistical analysis. We compared the performance of AffyILM and other traditional methods both in the old and in the newest generation of GeneChips. Results Tissue mixture and Latin Square datasets (provided by Affymetrix were used to assess the performances of the differential expression analysis depending on the preprocessing strategy. A correlation analysis conducted on the tissue mixture data reveals that the median-polish algorithm allows to best summarize AffyILM concentrations computed at the probe-level. Those correlation results are equivalent to the best correlations observed using popular preprocessing methods relying on intensity values. The performances of each tested preprocessing algorithm were quantified using the Latin Square HG-U133A dataset, thanks to the comparison of differential analysis results with the list of spiked genes. The figures of merit generated illustrates that the performances associated to AffyILM(medianpolish, inferred from the present statistical analysis, are comparable to the best performing strategies previously reported. Conclusions Converting probe intensities to estimates of target concentrations prior to the statistical analysis, AffyILM(medianpolish is one of the best performing strategy currently available. Using hybridization theory, probe-level estimates of target concentrations should be identically distributed. In the future, a probe-level multivariate analysis of the concentrations should be compared to the univariate analysis of

  5. Monte Carlo studies of model Langmuir monolayers.

    Science.gov (United States)

    Opps, S B; Yang, B; Gray, C G; Sullivan, D E

    2001-04-01

    This paper examines some of the basic properties of a model Langmuir monolayer, consisting of surfactant molecules deposited onto a water subphase. The surfactants are modeled as rigid rods composed of a head and tail segment of diameters sigma(hh) and sigma(tt), respectively. The tails consist of n(t) approximately 4-7 effective monomers representing methylene groups. These rigid rods interact via site-site Lennard-Jones potentials with different interaction parameters for the tail-tail, head-tail, and head-head interactions. In a previous paper, we studied the ground-state properties of this system using a Landau approach. In the present paper, Monte Carlo simulations were performed in the canonical ensemble to elucidate the finite-temperature behavior of this system. Simulation techniques, incorporating a system of dynamic filters, allow us to decrease CPU time with negligible statistical error. This paper focuses on several of the key parameters, such as density, head-tail diameter mismatch, and chain length, responsible for driving transitions from uniformly tilted to untilted phases and between different tilt-ordered phases. Upon varying the density of the system, with sigma(hh)=sigma(tt), we observe a transition from a tilted (NNN)-condensed phase to an untilted-liquid phase and, upon comparison with recent experiments with fatty acid-alcohol and fatty acid-ester mixtures [M. C. Shih, M. K. Durbin, A. Malik, P. Zschack, and P. Dutta, J. Chem. Phys. 101, 9132 (1994); E. Teer, C. M. Knobler, C. Lautz, S. Wurlitzer, J. Kildae, and T. M. Fischer, J. Chem. Phys. 106, 1913 (1997)], we identify this as the L'(2)/Ov-L1 phase boundary. By varying the head-tail diameter ratio, we observe a decrease in T(c) with increasing mismatch. However, as the chain length was increased we observed that the transition temperatures increased and differences in T(c) due to head-tail diameter mismatch were diminished. In most of the present research, the water was treated as a hard

  6. Mesoscale hybrid calibration artifact

    Science.gov (United States)

    Tran, Hy D.; Claudet, Andre A.; Oliver, Andrew D.

    2010-09-07

    A mesoscale calibration artifact, also called a hybrid artifact, suitable for hybrid dimensional measurement and the method for make the artifact. The hybrid artifact has structural characteristics that make it suitable for dimensional measurement in both vision-based systems and touch-probe-based systems. The hybrid artifact employs the intersection of bulk-micromachined planes to fabricate edges that are sharp to the nanometer level and intersecting planes with crystal-lattice-defined angles.

  7. Adsorption of anionic nanosheets from their dilute colloidal suspensions onto gas-liquid interfaces with and without a Langmuir film of cationic surfactant.

    Science.gov (United States)

    Ikegami, Keiichi; Tetsuka, Hiroyuki; Hoshi, Yasushi; Ebina, Takeo; Takashima, Hiroshi

    2010-02-16

    The adsorption of [(Ca(2)Nb(3)O(10))(-)](n) (CNO) polyanionic nanosheets from their dilute colloidal suspensions onto gas-liquid interfaces with and without a cationic [N(CH(3))(2)(C(18)H(37))(2)](+) (DOA) surfactant film has been experimentally investigated. Our concern has been focused particularly on their dynamical aspects, which can be observed owing to the long specific time of the adsorption. The theoretical framework of the Langmuir adsorption model has enabled a quantitative analysis of the observed data, and that analysis has indicated that the presence of a positively charged Langmuir film enhances the ratio of the adsorption and desorption rate constants by approximately 30 times. Furthermore, the experimental results have shown that a "balanced" hybrid Langmuir film, in which both organic and inorganic constituents are densely packed, can be prepared.

  8. A 16S rRNA-targeted Probe for Detection of Lactobacilli and Enterococci in Faecal Samples by Fluorescent In Situ Hybridization

    OpenAIRE

    Harmsen, Hermie J. M.; Elfferich, Peter; Schut, Frits; Welling, Gjalt W

    2011-01-01

    A group-specific 16S rRNA-targeted oligonucleotide probe S-G-Lab-0158-a-A20 (Lab158) was designed and validated to quantify species of the phylogenetic group lactobacilli-enterococci. The Lab158 probe detects nearly all species of the genera Lactobacillus, Enterococcus, Pediococcus, Weissella, Vagococcus, Leuconostoc and Oenococcus. The specificity of the probe was tested on various species of the target group and on a range of common intestinal bacteria. For these experiments, procedures to ...

  9. Facile semi-automated forensic body fluid identification by multiplex solution hybridization of NanoString® barcode probes to specific mRNA targets.

    Science.gov (United States)

    Danaher, Patrick; White, Robin Lynn; Hanson, Erin K; Ballantyne, Jack

    2015-01-01

    A DNA profile from the perpetrator does not reveal, per se, the circumstances by which it was transferred. Body fluid identification by mRNA profiling may allow extraction of contextual 'activity level' information from forensic samples. Here we describe the development of a prototype multiplex digital gene expression (DGE) method for forensic body fluid/tissue identification based upon solution hybridization of color-coded NanoString(®) probes to 23 mRNA targets. The method identifies peripheral blood, semen, saliva, vaginal secretions, menstrual blood and skin. We showed that a simple 5 min room temperature cellular lysis protocol gave equivalent results to standard RNA isolation from the same source material, greatly enhancing the ease-of-use of this method in forensic sample processing. We first describe a model for gene expression in a sample from a single body fluid and then extend that model to mixtures of body fluids. We then describe calculation of maximum likelihood estimates (MLEs) of body fluid quantities in a sample, and we describe the use of likelihood ratios to test for the presence of each body fluid in a sample. Known single source samples of blood, semen, vaginal secretions, menstrual blood and skin all demonstrated the expected tissue-specific gene expression for at least two of the chosen biomarkers. Saliva samples were more problematic, with their previously identified characteristic genes exhibiting poor specificity. Nonetheless the most specific saliva biomarker, HTN3, was expressed at a higher level in saliva than in any of the other tissues. Crucially, our algorithm produced zero false positives across this study's 89 unique samples. As a preliminary indication of the ability of the method to discern admixtures of body fluids, five mixtures were prepared. The identities of the component fluids were evident from the gene expression profiles of four of the five mixtures. Further optimization of the biomarker 'CodeSet' will be required

  10. Irving langmuir: o milagre da ciência

    Directory of Open Access Journals (Sweden)

    Gugliotti Marcos

    2001-01-01

    Full Text Available Irving Langmuir received the Nobel Prize in Chemistry in 1932 "...for his outstanding discoveries and investigations within the field of surface chemistry", according to the Swedish Academy. However, few people know that his work comprises other very important contributions, and not only for chemistry, such as the discovery of plasma, the atomic hydrogen, the pure thermoionic phenomenon, the development of the cloud seeding technique for weather modification, among many others. This paper summarizes Langmuir's most important discoveries and theories, with an especial mention for his practical inventions and his work on the atomic theory.

  11. Mobile Probing and Probes

    DEFF Research Database (Denmark)

    2013-01-01

    Mobile probing is a method, developed for learning about digital work situations, as an approach to discover new grounds. The method can be used when there is a need to know more about users and their work with certain tasks, but where users at the same time are distributed (in time and space......). Mobile probing was inspired by the cultural probe method, and was influenced by qualitative interview and inquiry approaches. The method has been used in two subsequent projects, involving school children (young adults at 15-17 years old) and employees (adults) in a consultancy company. Findings point...... to mobile probing being a flexible method for uncovering the unknowns, as a way of getting rich data to the analysis and design phases. On the other hand it is difficult to engage users to give in depth explanations, which seem easier in synchronous dialogs (whether online or face2face). The development...

  12. Mobile Probing and Probes

    DEFF Research Database (Denmark)

    2012-01-01

    Mobile probing is a method, which has been developed for learning about digital work situations, as an approach to discover new grounds. The method can be used when there is a need to know more about users and their work with certain tasks, but where users at the same time are distributed (in time...... and space). Mobile probing was inspired by the cultural probe method, and was influenced by qualitative interview and inquiry approaches. The method has been used in two subsequent projects, involving school children (young adults at 15-17 years old) and employees (adults) in a consultancy company. Findings...... point to mobile probing being a flexible method for uncovering the unknowns, as a way of getting rich data to the analysis and design phases. On the other hand it is difficult to engage users to give in depth explanations, which seem easier in synchronous dialogs (whether online or face2face...

  13. Mobile Probing and Probes

    DEFF Research Database (Denmark)

    2012-01-01

    Mobile probing is a method, which has been developed for learning about digital work situations, as an approach to discover new grounds. The method can be used when there is a need to know more about users and their work with certain tasks, but where users at the same time are distributed (in time...... and space). Mobile probing was inspired by the cultural probe method, and was influenced by qualitative interview and inquiry approaches. The method has been used in two subsequent projects, involving school children (young adults at 15-17 years old) and employees (adults) in a consultancy company. Findings...... point to mobile probing being a flexible method for uncovering the unknowns, as a way of getting rich data to the analysis and design phases. On the other hand it is difficult to engage users to give in depth explanations, which seem easier in synchronous dialogs (whether online or face2face...

  14. Terahertz generation by beating two Langmuir waves in a warm and collisional plasma

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Xiao-Bo; Qiao, Xin; Cheng, Li-Hong; Tang, Rong-An; Zhang, Ai-Xia; Xue, Ju-Kui, E-mail: xuejk@nwnu.edu.cn [Key Laboratory of Atomic & Molecular Physics and Functional Materials of Gansu Province, College of Physics and Electronics Engineering, Northwest Normal University, Lanzhou 730070 (China)

    2015-09-15

    Terahertz (THz) radiation generated by beating of two Langmuir waves in a warm and collisional plasma is discussed theoretically. The critical angle between the two Langmuir waves and the critical wave-length (wave vector) of Langmuir waves for generating THz radiation are obtained analytically. Furthermore, the maximum radiation energy is obtained. We find that the critical angle, the critical wave-length, and the generated radiation energy strongly depend on plasma temperature and wave-length of the Langmuir waves. That is, the THz radiation generated by beating of two Langmuir waves in a warm and collisional plasma can be controlled by adjusting the plasma temperature and the Langmuir wave-length.

  15. SYNTHESIS, PHYSICAL CHARACTERIZATIONS, AND LANGMUIR FILMS OF NEW METHANOFULLERENES

    NARCIS (Netherlands)

    RAVAINE, S; LEPECQ, F; MINGOTAUD, C; DELHAES, P; HUMMELEN, JC; WUDL, F; PATTERSON, LK

    1995-01-01

    Various methanofullerenes functionalized with either hydrophobic or polar groups have been synthesized. Studies of such compounds by surface pressure measurements and in situ UV-visible spectroscopy in Langmuir films show that these two types of functionalizations do not prevent the formation of

  16. Non-Linear Langmuir Wave Modulation in Collisionless Plasmas

    DEFF Research Database (Denmark)

    Dysthe, K. B.; Pécseli, Hans

    1977-01-01

    A non-linear Schrodinger equation for Langmuir waves is presented. The equation is derived by using a fluid model for the electrons, while both a fluid and a Vlasov formulation are considered for the ion dynamics. The two formulations lead to significant differences in the final results, especially...

  17. Langmuir adsorption isotherm for sulfolobus acidocaldarius on coal particles

    Energy Technology Data Exchange (ETDEWEB)

    Chen, C.Y.; Skidmore, D.R.

    1987-03-01

    Sulfolobus acidocaldarius attachment to coal particles was observed in 20% coal slurry at 72 C and pH 2.0. The rate and extent of attachment were determined and the data fit the Langmuir adsorption model. The results compared qualitatively with selected adsorption data from other investigators for Thiobacillus ferrooxidans. 11 refs.

  18. Features in Formation and Properties of Langmuir-Blodgett Monolayers

    Directory of Open Access Journals (Sweden)

    A.P. Kuzmenko

    2013-12-01

    Full Text Available Features in formation of Langmuir-Blodgett films and possible control and study of their properties directly in deposing them onto sub-strates are studied. Linearity of the dependence of polarization on the slope angle of the static dipole moment for C18H36O2 and C18H34O2 has been checked.

  19. Langmuir turbulence in the auroral ionosphere 1: Linear theory

    Science.gov (United States)

    Newman, D. L.; Goldman, M. V.; Ergun, R. E.; Boehm, M. H.

    1994-01-01

    Intense bursts of Langmuir waves with electric fields of 50 to 500 mV / m have been frequently observed at altitudes greater than 500 km in the auroral ionosphere. These bursts are driven by 20 eV to 4 keV field-aligned electrons, which are embedded in an approximately isotropic nonthermal tail of scattered electrons. The Langmuir bursts are often observed at altitudes where the ionosphere is moderately magnetized (OMEGA (sub e) approximately equals omega (sub pe)). Both the moderate magnetization and the scattered electrons have a major influence on the linear dispersion and damping of Langmuir waves. In particular, the linear dispersion is topologically different depending on whether the magnetic field is subcritical (OMEGA (sub e) less than omega (sub pe)) or supercritical (OMEGA (sub e) greater than omega (sub pe)). The correct dispersion and damping can account for the observed polarization of the Langmuir waves, which is very nearly parallel to the geomagnetic field. Inferred properties of the linear instability driven by the field-aligned electrons are discussed. The linear dispersion and damping derived here provide the basis for a nonlinear turbulence study described in a companion paper (Newman et al., this issue).

  20. Molecular arrangement in Langmuir and Langmuir-Blodgett films of a mesogenic bent-core carboxylic acid.

    Science.gov (United States)

    Giner, Ignacio; Gascón, Ignacio; Vergara, Jorge; López, M Carmen; Ros, M Blanca; Royo, Félix M

    2009-10-20

    A different alternative to previous research on Langmuir and Langmuir-Blodgett (LB) films of bent-core liquid crystals is reported in this work. A bent-shaped molecule wearing a terminal carboxylic group has been used to obtain monomolecular films with their long molecular axis almost perpendicular to the aqueous surface. Langmuir films at the air-liquid interface (pH=9) have been characterized by a combination of surface pressure and surface potential versus area per molecule isotherms, Brewster angle microscopy, and ultraviolet reflection spectroscopy. A condensed phase is reached at surface pressures up to 20 mN x m-1. In this condensed phase, molecules are packed forming H-aggregates with a well-defined molecular orientation. Langmuir films have been transferred onto quartz and silicon substrates and characterized by means of UV-vis spectroscopy and XRR. The transference is Z-type, with a constant deposition of the monolayers. The total LB monolayer film thickness is evaluated to be about 5.8 nm, which is in good agreement with the deduced orientation at the air-liquid interface as well as with the lamellar order observed within the solid obtained by cooling the sample from the mesophase.

  1. The Production of PEO Polymer Brushes via Langmuir-Blodgett and Langmuir-Schaeffer Methods: Incomplete Transfer and Its Consequences

    NARCIS (Netherlands)

    Vos, de W.M.; Keizer, de A.; Kleijn, J.M.; Cohen Stuart, M.A.

    2009-01-01

    Using fixed-angle ellipsometry, we investigate the degree of mass transfer upon vertically dipping a polystyrene surface through a layer of a polystyrene-poly(ethylene oxide) (PS-PEO) block copolymer at the air water interface (Langmuir-Blodgett or LB transfer). The transferred mass is proportional

  2. Unravelling the Bacterial Vaginosis-Associated Biofilm: A Multiplex Gardnerella vaginalis and Atopobium vaginae Fluorescence In Situ Hybridization Assay Using Peptide Nucleic Acid Probes.

    Directory of Open Access Journals (Sweden)

    Liselotte Hardy

    Full Text Available Bacterial vaginosis (BV, a condition defined by increased vaginal discharge without significant inflammation, is characterized by a change in the bacterial composition of the vagina. Lactobacillus spp., associated with a healthy vaginal microbiome, are outnumbered by BV-associated organisms. These bacteria could form a polymicrobial biofilm which allows them to persist in spite of antibiotic treatment. In this study, we examined the presence of Gardnerella vaginalis and Atopobium vaginae in vaginal biofilms using Peptide Nucleic Acid (PNA probes targeting these bacteria. For this purpose, we developed three new PNA probes for A. vaginae. The most specific A. vaginae probe, AtoITM1, was selected and then used in an assay with two existing probes, Gard162 and BacUni-1, to evaluate multiplex FISH on clinical samples. Using quantitative polymerase chain reaction (qPCR as the gold standard, we demonstrated a sensitivity of 66.7% (95% confidence interval: 54.5% - 77.1% and a specificity of 89.4% (95% confidence interval: 76.1% - 96% of the new AtoITM1 probe. FISH enabled us to show the presence of a polymicrobial biofilm in bacterial vaginosis, in which Atopobium vaginae is part of a Gardnerella vaginalis-dominated biofilm. We showed that the presence of this biofilm is associated with high bacterial loads of A. vaginae and G. vaginalis.

  3. Unravelling the Bacterial Vaginosis-Associated Biofilm: A Multiplex Gardnerella vaginalis and Atopobium vaginae Fluorescence In Situ Hybridization Assay Using Peptide Nucleic Acid Probes.

    Science.gov (United States)

    Hardy, Liselotte; Jespers, Vicky; Dahchour, Nassira; Mwambarangwe, Lambert; Musengamana, Viateur; Vaneechoutte, Mario; Crucitti, Tania

    2015-01-01

    Bacterial vaginosis (BV), a condition defined by increased vaginal discharge without significant inflammation, is characterized by a change in the bacterial composition of the vagina. Lactobacillus spp., associated with a healthy vaginal microbiome, are outnumbered by BV-associated organisms. These bacteria could form a polymicrobial biofilm which allows them to persist in spite of antibiotic treatment. In this study, we examined the presence of Gardnerella vaginalis and Atopobium vaginae in vaginal biofilms using Peptide Nucleic Acid (PNA) probes targeting these bacteria. For this purpose, we developed three new PNA probes for A. vaginae. The most specific A. vaginae probe, AtoITM1, was selected and then used in an assay with two existing probes, Gard162 and BacUni-1, to evaluate multiplex FISH on clinical samples. Using quantitative polymerase chain reaction (qPCR) as the gold standard, we demonstrated a sensitivity of 66.7% (95% confidence interval: 54.5% - 77.1%) and a specificity of 89.4% (95% confidence interval: 76.1% - 96%) of the new AtoITM1 probe. FISH enabled us to show the presence of a polymicrobial biofilm in bacterial vaginosis, in which Atopobium vaginae is part of a Gardnerella vaginalis-dominated biofilm. We showed that the presence of this biofilm is associated with high bacterial loads of A. vaginae and G. vaginalis.

  4. Mobile Probing and Probes

    DEFF Research Database (Denmark)

    2013-01-01

    to mobile probing being a flexible method for uncovering the unknowns, as a way of getting rich data to the analysis and design phases. On the other hand it is difficult to engage users to give in depth explanations, which seem easier in synchronous dialogs (whether online or face2face). The development...

  5. Langmuir films of chiral lipid molecules and Pattern Formation .

    Science.gov (United States)

    Basnet, Prem; Mann, Elizabeth; Chaieb, Sahraoui

    2009-03-01

    Langmuir films of 1,2-bis(10,12 Tricosadiynoyl)-sn-Glycero-3-Phosphoethanolamine form spiral and target patterns when compressed between two movable barriers in a Langmuir trough above 30^0C, up to the chain-melting transition at ˜37^0C. The critical pressure, at which spirals appear, increases with temperature. The patterns themselves also depend on temperature, with single-armed spirals with many defects forming near 30^0C and defect-free target patterns at higher temperatures. The mechanism of spiral formation could be a competition among elasticity, chirality, and the boundary conditions at the core of the domains. Optical anisotropy and the growth rate of internal structures test this suggested mechanism. .

  6. Moment equations for chromatography based on Langmuir type reaction kinetics.

    Science.gov (United States)

    Miyabe, Kanji

    2014-08-22

    Moment equations were derived for chromatography, in which the reaction kinetics between solute molecules and functional ligands on the stationary phase was represented by the Langmuir type rate equation. A set of basic equations of the general rate model of chromatography representing the mass balance, mass transfer rate, and reaction kinetics in the column were analytically solved in the Laplace domain. The moment equations for the first absolute moment and the second central moment in the real time domain were derived from the analytical solution in the Laplace domain. The moment equations were used for predicting the chromatographic behavior under hypothetical HPLC conditions. The influence of the parameters relating to the adsorption equilibrium and to the reaction kinetics on the chromatographic behavior was quantitatively evaluated. It is expected that the moment equations are effective for a detailed analysis of the influence of the mass transfer rates and of the Langmuir type reaction kinetics on the column efficiency.

  7. A new approach to the Child-Langmuir law

    CERN Document Server

    Gonzalez, Gabriel

    2015-01-01

    We analyze the motion of charged particles in a vacuum tube diode using a new set of variables. We obtain the space charge limited current for a charged particle moving non-relativistically in one dimension for the case of zero and non zero initial velocity. Our approach gives a new physical insight into the Child-Langmuir law and avoids the need of solving a nonlinear differential equation.

  8. 2-D Polymerized Langmuir-Blodgett Films Studied by STM

    Science.gov (United States)

    1993-10-20

    Langmuir polymerization of 3- hexadecyl pyrrole. By spreading monomer at room temperature on an oxidizing subphase (0.03 M ammonium persulfate ) and...used to image LB films 9 ,10. In our case, the intrinsic conductivity of the polypyrrole backbone should change the contrast and allow us to image...polymerization. All monolayer samples were prepared by one upstroke of the MoS 2 substrate, placing the hydrophilic pyrrole rings or the polypyrrole

  9. Planktonic interactions and chaotic advection in Langmuir circulation

    DEFF Research Database (Denmark)

    Bees, Martin Alan; Mezic, I.; McGlade, J.

    1998-01-01

    The role of unsteady laminar flows for planktonic communities is investigated. Langmuir circulation is used, as a typical medium-scale structure, to illustrate mechanisms for the generation of plankton patches. Two behaviours are evident: chaotic regions that help to spread plankton and locally c...... coherent regions that do not mix with the chaotic regions and which persist for long periods of time. The interaction of populations of phytoplankton with zooplankton is discussed, taking into account the variations in plankton buoyancy....

  10. Probe and method for DNA detection

    Science.gov (United States)

    Yeh, Hsin-Chih; Werner, James Henry; Sharma, Jaswinder Kumar; Martinez, Jennifer Suzanne

    2013-07-02

    A hybridization probe containing two linear strands of DNA lights up upon hybridization to a target DNA using silver nanoclusters that have been templated onto one of the DNA strands. Hybridization induces proximity between the nanoclusters on one strand and an overhang on the other strand, which results in enhanced fluorescence emission from the nanoclusters.

  11. Accelerated electron populations formed by Langmuir wave-caviton interactions

    CERN Document Server

    Sircombe, N J; Dendy, R O

    2004-01-01

    Direct numerical simulations of electron dynamics in externally driven electrostatic waves have been carried out using a relativistic two-fluid one-dimensional Vlasov-Poisson code. When the driver wave has sufficiently large amplitude, ion density holes (cavitons) form. The interaction between these cavitons and other incoming Langmuir waves gives rise to substantial local acceleration of groups of electrons, and fine jet-like structures arise in electron phase space. We show that these jets are caused by wave-breaking when finite amplitude Langmuir waves experience the ion density gradient at the leading edge of the holes, and are not caused by caviton burn-out. An analytical two-fluid model gives the critical density gradient and caviton depth for which this process can occur. In particular, the density gradient critically affects the rate at which a Langmuir wave, moving into the caviton, undergoes Landau damping. This treatment also enables us to derive analytical estimates for the maximum energy of accel...

  12. Saturation of Langmuir waves in laser-produced plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Baker, K.L.

    1996-04-01

    This dissertation deals with the interaction of an intense laser with a plasma (a quasineutral collection of electrons and ions). During this interaction, the laser drives large-amplitude waves through a class of processes known as parametric instabilities. Several such instabilities drive one type of wave, the Langmuir wave, which involves oscillations of the electrons relative to the nearly-stationary ions. There are a number of mechanisms which limit the amplitude to which Langmuir waves grow. In this dissertation, these mechanisms are examined to identify qualitative features which might be observed in experiments and/or simulations. In addition, a number of experiments are proposed to specifically look for particular saturation mechanisms. In a plasma, a Langmuir wave can decay into an electromagnetic wave and an ion wave. This parametric instability is proposed as a source for electromagnetic emission near half of the incident laser frequency observed from laser-produced plasmas. This interpretation is shown to be consistent with existing experimental data and it is found that one of the previous mechanisms used to explain such emission is not. The scattering version of the electromagnetic decay instability is shown to provide an enhanced noise source of electromagnetic waves near the frequency of the incident laser.

  13. Epidemic Intelligence. Langmuir and the Birth of Disease Surveillance

    Directory of Open Access Journals (Sweden)

    Lyle Fearnley

    2010-12-01

    Full Text Available In the wake of the SARS and influenza epidemics of the past decade, one public health solution has become a refrain: surveillance systems for detection of disease outbreaks. This paper is an effort to understand how disease surveillance for outbreak detection gained such paramount rationality in contemporary public health. The epidemiologist Alexander Langmuir is well known as the creator of modern disease surveillance. But less well known is how he imagined disease surveillance as one part of what he called “epidemic intelligence.” Langmuir developed the practice of disease surveillance during an unprecedented moment in which the threat of biological warfare brought civil defense experts and epidemiologists together around a common problem. In this paper, I describe how Langmuir navigated this world, experimenting with new techniques and rationales of epidemic control. Ultimately, I argue, Langmuir′s experiments resulted in a set of techniques and infrastructures – a system of epidemic intelligence – that transformed the epidemic as an object of human art.

  14. Unexpected bilayer formation in Langmuir films of nucleolipids.

    Science.gov (United States)

    Desbat, Bernard; Arazam, Nessim; Khiati, Salim; Tonelli, Giovanni; Neri, Wilfrid; Barthélémy, Philippe; Navailles, Laurence

    2012-05-01

    Langmuir monolayers have been extensively investigated by various experimental techniques. These studies allowed an in-depth understanding of the molecular conformation in the layer, phase transitions, and the structure of the multilayer. As the monolayer is compressed and the surface pressure is increased beyond a critical value, usually occurring in the minimal closely packed molecular area, the monolayer fractures and/or folds, forming multilayers in a process referred to as collapse. Various mechanisms for monolayer collapse and the resulting reorganization of the film have been proposed, and only a few studies have demonstrated the formation of a bilayer after collapse and with the use of a Ca(2+) solution. In this work, Langmuir isotherms coupled with imaging ellipsometry and polarization modulation infrared reflection absorption spectroscopy were recorded to investigate the air-water interface properties of Langmuir films of anionic nucleolipids. We report for these new molecules the formation of a quasi-hexagonal packing of bilayer domains at a low compression rate, a singular behavior for lipids at the air-water interface that has not yet been documented.

  15. A Study of Uranus' Bow Shock Motions Using Langmuir Waves

    Science.gov (United States)

    Xue, S.; Cairns, I. H.; Smith, C. W.; Gurnett, D. A.

    1996-01-01

    During the Voyager 2 flyby of Uranus, strong electron plasma oscillations (Langmuir waves) were detected by the plasma wave instrument in the 1.78-kHz channel on January 23-24, 1986, prior to the inbound bow shock crossing. Langmuir waves are excited by energetic electrons streaming away from the bow shock. The goal of this work is to estimate the location and motion of Uranus' bow shock using Langmuir wave data, together with the spacecraft positions and the measured interplanetary magnetic field. The following three remote sensing analyses were performed: the basic remote sensing method, the lag time method, and the trace-back method. Because the interplanetary magnetic field was highly variable, the first analysis encountered difficulties in obtaining a realistic estimation of Uranus' bow shock motion. In the lag time method developed here, time lags due to the solar wind's finite convection speed are taken into account when calculating the shock's standoff distance. In the new trace-back method, limits on the standoff distance are obtained as a function of time by reconstructing electron paths. Most of the results produced by the latter two analyses are consistent with predictions based on the standard theoretical model and the measured solar wind plasma parameters. Differences between our calculations and the theoretical model are discussed.

  16. Langmuir films of petroleum at the air-water interface.

    Science.gov (United States)

    Vieira, Vinícius C C; Severino, Divinomar; Oliveira, Osvaldo N; Pavinatto, Felippe J; Zaniquelli, Maria E D; Ramos, Ana Paula; Baptista, Maurício S

    2009-11-03

    Understanding the behavior of petroleum films at the air/water interface is crucial for dealing with oil slicks and reducing the damages to the environment, which has normally been attempted with studies of Langmuir films made of fractions of petroleum. However, the properties of films from whole petroleum samples may differ considerably from those of individual fractions. Using surface pressure and surface potential measurements and Brewster angle and fluorescence microscopy, we show that petroleum forms a nonhomogeneous Langmuir film at the air-water interface. The surface pressure isotherms for petroleum Langmuir films exhibit gas (G), liquid-expanded (LE), and liquid-condensed phases, with almost no hysteresis in the compression-decompression cycles. Domains formed upon compression from the G to the LE phase were accompanied by an increase in fluorescence intensity with excitation at 400-440 nm owing to an increase in the surface density of the chromophores in the petroleum film. The surface pressure and the fluorescence microscopy data pointed to self-assembling domains into a pseudophase in thermodynamic equilibrium with other less emitting petroleum components. This hypothesis was supported by Brewster angle microscopy images, whereby the appearance of water domains even at high surface pressures confirms the tendency of petroleum to stabilize emulsion systems. The results presented here suggest that, for understanding the interaction with water, it may be more appropriate to use the whole petroleum samples rather than its fractions.

  17. Langmuir mixing effects on global climate: WAVEWATCH III in CESM

    Science.gov (United States)

    Li, Qing; Webb, Adrean; Fox-Kemper, Baylor; Craig, Anthony; Danabasoglu, Gokhan; Large, William G.; Vertenstein, Mariana

    2016-07-01

    Large-Eddy Simulations (LES) have shown the effects of ocean surface gravity waves in enhancing the ocean boundary layer mixing through Langmuir turbulence. Neglecting this Langmuir mixing process may contribute to the common shallow bias in mixed layer depth in regions of the Southern Ocean and the Northern Atlantic in most state-of-the-art climate models. In this study, a third generation wave model, WAVEWATCH III, has been incorporated as a component of the Community Earth System Model, version 1.2 (CESM1.2). In particular, the wave model is now coupled with the ocean model through a modified version of the K-Profile Parameterization (KPP) to approximate the influence of Langmuir mixing. Unlike past studies, the wind-wave misalignment and the effects of Stokes drift penetration depth are considered through empirical scalings based on the rate of mixing in LES. Wave-Ocean only experiments show substantial improvements in the shallow biases of mixed layer depth in the Southern Ocean. Ventilation is enhanced and low concentration biases of pCFC-11 are reduced in the Southern Hemisphere. A majority of the improvements persist in the presence of other climate feedbacks in the fully coupled experiments. In addition, warming of the subsurface water over the majority of global ocean is observed in the fully coupled experiments with waves, and the cold subsurface ocean temperature biases are reduced.

  18. Probing the receptor recognition site of the FimH adhesin by fimbriae-displayed FimH-FocH hybrids

    DEFF Research Database (Denmark)

    Knudsen, Thomas Borch; Klemm, Per

    1998-01-01

    Type 1 fimbriae are surface organelles of Escherichia coli which mediate D-mannose-sensitive binding to different host surfaces.This binding is conferred by the minor fimbrial component FimH. The binding domain of the FimH adhesin has been studied byconstructing hybrids of FimH and a homologous...

  19. Cellulase and alcohol dehydrogenase immobilized in Langmuir and Langmuir-Blodgett films and their molecular-level effects upon contact with cellulose and ethanol.

    Science.gov (United States)

    Rodrigues, Dilmer; Camilo, Fernanda Ferraz; Caseli, Luciano

    2014-02-25

    The key challenges for producing devices based on nanostructured films with control over the molecular architecture are to preserve the catalytic activity of the immobilized biomolecules and to provide a reliable method for determining the intermolecular interactions and the accommodation of molecules at very small scales. In this work, the enzymes cellulase and alcohol dehydrogenase (ADH) were coimmobilized with dipalmitoylphosphatidylcholine (DPPC) as Langmuir-Blodgett (LB) films, and their biological activities were assayed by accommodating the structure formed in contact with cellulose. For this purpose, the polysaccharide was dissolved in an ionic liquid, 1-buthyl-3-methylimidazolium chloride (BMImCl), and dropped on the top of the hybrid cellulase-ADH-DPPC LB film. The interactions between cellulose and ethanol, which are the catalytic substrates of the enzymes as well as important elements in the production of second-generation fuels, were then investigated using polarization-modulation infrared reflection-absorption spectroscopy (PM-IRRAS). Investigation of the secondary structures of the enzymes was performed using PM-IRRAS, through which the presence of ethanol and cellulose was observed to highly affect the structures of ADH and cellulase, respectively. The detection of products formed from the catalyzed reactions as well as the changes of secondary structure of the enzymes immobilization could be carried out, which opens the possibility to produce a means for producing second-generation ethanol using nanoscale arrangements.

  20. 16S rRNA-targeted probes for specific detection of Thermoanaerobacterium spp., Thermoanaerobacterium thermosaccharolyticum, and Caldicellulosiruptor spp. by fluorescent in situ hybridization in biohydrogen producing systems

    DEFF Research Database (Denmark)

    O-Thong, Sompong; Prasertsan, P.; Karakashev, Dimitar Borisov

    2008-01-01

    spp. were detected with the probes designed with coverage of 75%, 100% and 93%, respectively. Thermophilic (60 °C) hydrogen producing reactors, one fed with sucrose and another, fed with palm oil mill effluent comprised of following major groups of hydrogen producers: Thermoanaerobacterium spp. (49...

  1. Probing into hybrid organic-molecule and InAs quantum-dots nanosystem with multistacked dots-in-a-well units

    DEFF Research Database (Denmark)

    Chen, Miaoxiang Max; Kobashi, Kazufumi

    2012-01-01

    Hybridizing air-stable organic-molecules with advanced III-V semiconductor quantum-dots (QDs) structures can be utilized to create a new generation of biochemical sensing devices. In order to enhance their optical performances, the active regions in these QDs structures commonly consist...... of multistacked dots-in-a-well (DWELL) units. The effects of grafted molecules on the performances of the QDs structures with multistacked DWELLs, however, still remain unclear. Here, we show the significant improvements in the optical properties of InAs QDs in a hybrid nanosystem obtained by grafting...... biocompatible diazonium salt compound (amine donor) atop InAs QDs structure. Since its interface between the QDs structure and molecular monolayer retains an uncontaminated and non-oxidized condition, the nanosystem is an ideal platform to study the intrinsic properties of charge-carrier transport inside...

  2. Probing the Salt Concentration Dependent Nucelobase Distribution in a Single-Stranded DNA-Single-Walled Carbon Nanotube Hybrid with Molecular Dynamics.

    Science.gov (United States)

    Ghosh, Soumadwip; Patel, Nisheet; Chakrabarti, Rajarshi

    2016-01-28

    The hybrids of single-walled carbon nanotube (SWCNT) and single stranded DNA (ssDNA) are novel nanoscale materials having remarkable applications in nanotechnology. The absorption of nucleobases on the surface of a SWCNT depends strongly on the ionic strength of the medium. In this paper, using atomistic molecular dynamics we have shown that at low salt concentration ssDNA wraps on the surface of SWCNT through hydrophobic π-π stacking between the DNA bases and the sp(2)-hybridized carbon atoms of the carbon nanotube. At high salt concentration, however, the DNA molecule adopts a partially folded structure and the ssDNA-SWCNT wrapping gets weakened significantly due to the self-stacking of the DNA bases. Our study can find relevance in CNT mediated gene delivery processes where subsequent unwrapping of the gene from its carrier is anticipated across the cell membrane regulated by an existing salt concentration gradient.

  3. Chaotic mixer improves microarray hybridization.

    Science.gov (United States)

    McQuain, Mark K; Seale, Kevin; Peek, Joel; Fisher, Timothy S; Levy, Shawn; Stremler, Mark A; Haselton, Frederick R

    2004-02-15

    Hybridization is an important aspect of microarray experimental design which influences array signal levels and the repeatability of data within an array and across different arrays. Current methods typically require 24h and use target inefficiently. In these studies, we compare hybridization signals obtained in conventional static hybridization, which depends on diffusional target delivery, with signals obtained in a dynamic hybridization chamber, which employs a fluid mixer based on chaotic advection theory to deliver targets across a conventional glass slide array. Microarrays were printed with a pattern of 102 identical probe spots containing a 65-mer oligonucleotide capture probe. Hybridization of a 725-bp fluorescently labeled target was used to measure average target hybridization levels, local signal-to-noise ratios, and array hybridization uniformity. Dynamic hybridization for 1h with 1 or 10ng of target DNA increased hybridization signal intensities approximately threefold over a 24-h static hybridization. Similarly, a 10- or 60-min dynamic hybridization of 10ng of target DNA increased hybridization signal intensities fourfold over a 24h static hybridization. In time course studies, static hybridization reached a maximum within 8 to 12h using either 1 or 10ng of target. In time course studies using the dynamic hybridization chamber, hybridization using 1ng of target increased to a maximum at 4h and that using 10ng of target did not vary over the time points tested. In comparison to static hybridization, dynamic hybridization reduced the signal-to-noise ratios threefold and reduced spot-to-spot variation twofold. Therefore, we conclude that dynamic hybridization based on a chaotic mixer design improves both the speed of hybridization and the maximum level of hybridization while increasing signal-to-noise ratios and reducing spot-to-spot variation.

  4. Equatorial Scintillation Predictions from C/NOFS Planar Langmuir Probe Electron Density Fluctuation Data

    Science.gov (United States)

    2014-09-05

    Brasil Tel: 55 21 3527 1682; Fax: 55 21 3527 1154 E-mail: epoc@cetuc.puc-rio.br FINAL PERFORMANCE REPORT Equatorial scintillation...Costa Centro de Estudos em Telecomunicações/CETUC Rua Marquês de São Vicente, 225 – Gávea 22451-900 Rio de Janeiro - RJ – Brasil Tel: 55 21 3527...Emanoel Costa Centro de Estudos em Telecomunicações/CETUC Rua Marquês de São Vicente, 225 – Gávea 22451-900 Rio de Janeiro - RJ – Brasil Tel: 55

  5. Nonlinear circuit analysis of harmonic currents in a floating Langmuir probe with a capacitive load

    Science.gov (United States)

    Kim, Kyung-Hyun; Kim, Dong-Hwan; Chung, Chin-Wook

    2017-02-01

    Plasma diagnostics using the floating harmonic technique were first used to obtain the electron temperature in a tokamak plasma. In this technique, the electron temperature depends on the ratio of the harmonic currents in a resistive sheath. Because these harmonic currents are determined by a modulated sheath voltage, calculation of the exact modulated voltage across the sheath is important; in general, the voltage is calculated using a phase of the first harmonic current. However, when a series load capacitance is present, the second harmonic currents are abnormally reduced compared to those expected by the conventional floating harmonic model, resulting in an unreliable measurement of the electron temperature. To describe this phenomenon, we used a modified floating harmonic model by applying the harmonic balance technique, a method that analyzes nonlinear circuits. Theoretical prediction of the harmonic current obtained from the modified model was compared with the experimental results, and they are in good agreement. In addition, the degrees of sheath nonlinearity, defined as the ratio of the second harmonic current (or voltage) to the fundamental current (or voltage), are discussed.

  6. Langmuir Probe Measurements of Inductively Coupled Plasma in CF4/AR/O2 Mixtures

    Science.gov (United States)

    Rao, M. V. V. S.; Cruden, Brett; Sharma, Surendra; Meyyappan, Meyya

    2001-01-01

    Inductively coupled plasmas of CF4:Ar:O2, which have been of importance to material processing, were studied in the GEC cell at 80:10:10, 60:20:20, and 40:30:30 mixture ratios. Radial distributions of plasma potential (V(sub p)), electron and ion number densities (n(sub e) and n(sub i)), electron temperature (T(sub e)), and electron energy distribution functions (EEDFs) were measured in the mid-plane of plasma across the electrodes in the pressure range of 10-50 mTorr, and RF power of 200 and 300 W. V(sub p), n(sub e) and n(sub i), which peak in the center of the plasma, increase with decrease of pressure. T(sub e) also increases with pressure but peaks toward the electrode edge. Both V(sub p) and T(sub e) remain nearly independent of RF power, whereas n(sub e) and n(sub i) increase with power. In all conditions the EEDFs exhibit non-Maxwellian shape and are more like Druyvesteyn form at higher energies. They exhibit a broad lip in the energy range 0-10 eV suggesting an electron loss mechanism, which could be due to via resonance electron attachment processes producing negative ions in this rich electronegative gas mixture. This behavior is more prominent towards the electrode edge.

  7. Langmuir Probe Measurements of Inductively Coupled Plasmas in CF4/Ar/O2 Mixtures

    Science.gov (United States)

    Rao, M. V. V. S.; Cruden, Brett; Sharma, Surendra; Meyyappan, Meyya

    2001-01-01

    Inductively coupled plasmas of CF4:Ar:O2, which have been of importance to material processing, were studied in the GEC cell at 80:10:10, 60:20:20, and 40:30:30 mixture ratios. Radial distributions of plasma potential (V(sub p)), electron and ion number densities (n(sub e) and n(sub i), electron temperature (T(sub e)), and electron energy distribution functions (EEDFs) were measured in the mid-plane of plasma across the electrodes in the pressure range of 10-50 mTorr, and RF (radio frequency) power of 200 and 300 W. V(sub p), n(sub e) and n(sub i), which peak in the center of the plasma, increase with decrease of pressure. T(sub e) also increases with pressure but peaks toward the electrode edge. Both V(sub p) and T(sub e) remain nearly independent of RF power, whereas n(sub e) and n(sub i) increase with power. In all conditions the EEDFs exhibit non-Maxwellian shape and are more like Druyvesteyn form at higher energies. They exhibit a broad dip in the energy range 0-10 eV suggesting an electron loss mechanism, which could be due to via resonance electron attachment processes producing negative ions in this rich electronegative gas mixture. This behavior is more prominent towards the electrode edge.

  8. Langmuir Probes for Obstanovka Experiment Aboard the Russian Segment of the International Space Station

    Science.gov (United States)

    2010-08-04

    PWC - Data processing and interpretation 15. SUBJECT TERMS EOARD, Electrostatics, Spacecraft Charging 16. SECURITY ...modified ZigBee protocol) is used realized on JN 5138 modules of the firm Jennic  Elaboration of Control Test System for the flight instruments...Power 3.3 V EEPROM 2x64 K ZigBee : N51xx Wireless communication UART1 I2C UART2 5 ZigBee is the newest wireless technology with the best

  9. Differentiation of Moraxella nonliquefaciens, M. lacunata, and M. bovis by using multilocus enzyme electrophoresis and hybridization with pilin-specific DNA probes.

    OpenAIRE

    1992-01-01

    Genetic relationships among strains of Moraxella nonliquefaciens, M. lacunata, and M. bovis were studied by using multilocus enzyme electrophoresis and DNA-DNA hybridization. The 74 isolates analyzed for electrophoretic variation at 12 enzyme loci were assigned to 59 multilocus genotypes. The multilocus genotypes were grouped in four major clusters, one representing strains of M. nonliquefaciens, two representing strains of M. lacunata, and one comprising strains of M. bovis and the single st...

  10. The Interaction of the Solar Wind with Solar Probe Plus - 3D Hybrid Simulation. Report 2: The Study for the Distance 9.5Rs

    Science.gov (United States)

    Lipatov, Alexander S.; Sittler, Edward C.; Hartle, Richard E.; Cooper, John F.

    2010-01-01

    Our paper is a 2.5D and 3D numerical plasma models of the interaction of the solar wind (SW) with the Solar Probe Plus spacecraft (SPPSC). These results should be interpreted as a basic plasma model for which the derived SW interaction with spacecraft (SC) could have consequences for both plasma wave and electron plasma measurements on board SC in the inner heliosphere. We observe an excitation of the low frequency Alfven and whistler type wave directed by the magnetic field with an amplitude of the electromagnetic field oscillation about of (0.015-0.06) V/m. The compression waves and the jumps in an electric field with an amplitude of about 1.5 V/m and (12-18) V/m were also observed. The observed strong electromagnetic perturbations may be a crucial point in the electromagnetic measurements, which were planned in future Solar Probe Plus mission.

  11. Whistler-Langmuir oscillitons and their relation to auroral hiss

    Directory of Open Access Journals (Sweden)

    K. Sauer

    2011-10-01

    Full Text Available A new type of oscilliton (soliton with superimposed spatial oscillations is described which arises in plasmas if the electron cyclotron frequency Ωe is larger than the electron plasma frequency ωe, which is a typical situation for auroral regions in planetary magnetospheres. Both high-frequency modes of concern, the Langmuir and the whistler wave, are completely decoupled if they propagate parallel to the magnetic field. However, for oblique propagation two mixed modes are created with longitudinal and transverse electric field components. The lower mode (in the literature commonly called the whistler mode, e.g. Gurnett et al., 1983 has whistler wave characteristics at small wave numbers and asymptotically transforms into the Langmuir mode. As a consequence of the coupling between these two modes, with different phase velocity dependence, a maximum in phase velocity appears at finite wave number. The occurrence of such a particular point where phase and group velocity coincide creates the condition for the existence of a new type of oscillating nonlinear stationary structure, which we call the whistler-Langmuir (WL oscilliton. After determining, by means of stationary dispersion theory, the parameter regime in which WL oscillitons exist, their spatial profiles are calculated within the framework of cold (non-relativistic fluid theory. Particle-in-cell (PIC simulations are used to demonstrate the formation of WL oscillitons which seem to play an important role in understanding electron beam-excited plasma radiation that is observed as auroral hiss in planetary magnetospheres far away from the source region.

  12. Langmuir monolayers composed of single and double tail sulfobetaine lipids.

    Science.gov (United States)

    Hazell, Gavin; Gee, Anthony P; Arnold, Thomas; Edler, Karen J; Lewis, Simon E

    2016-07-15

    Owing to structural similarities between sulfobetaine lipids and phospholipids it should be possible to form stable Langmuir monolayers from long tail sulfobetaines. By modification of the density of lipid tail group (number of carbon chains) it should also be possible to modulate the two-dimensional phase behaviour of these lipids and thereby compare with that of equivalent phospholipids. Potentially this could enable the use of such lipids for the wide array of applications that currently use phospholipids. The benefit of using sulfobetaine lipids is that they can be synthesised by a one-step reaction from cheap and readily available starting materials and will degrade via different pathways than natural lipids. The molecular architecture of the lipid can be easily modified allowing the design of lipids for specific purposes. In addition the reversal of the charge within the sulfobetaine head group relative to the charge orientation in phospholipids may modify behaviour and thereby allow for novel uses of these surfactants. Stable Langmuir monolayers were formed composed of single and double tailed sulfobetaine lipids. Surface pressure-area isotherm, Brewster Angle Microscopy and X-ray and neutron reflectometry measurements were conducted to measure the two-dimensional phase behaviour and out-of-plane structure of the monolayers as a function of molecular area. Sulfobetaine lipids are able to form stable Langmuir monolayers with two dimensional phase behaviour analogous to that seen for the well-studied phospholipids. Changing the number of carbon tail groups on the lipid from one to two promotes the existence of a liquid condensed phase due to increased Van der Waals interactions between the tail groups. Thus the structure of the monolayers appears to be defined by the relative sizes of the head and tail groups in a predictable way. However, the presence of sub-phase ions has little effect on the monolayer structure, behaviour that is surprisingly different to

  13. Thermionic phenomena the collected works of Irving Langmuir

    CERN Document Server

    Suits, C Guy

    1961-01-01

    Thermionic Phenomena is the third volume of the series entitled The Collected Works of Irving Langmuir. This volume compiles articles written during the 1920's and early 1930's, the period when the science of thermionics is beginning to be of importance. This text is divided into two parts. The first part discusses vacuum pumps, specifically examining the effect of space charge and residual gases on thermionic currents in high vacuum. This part also explains fundamental phenomena in electron tubes having tungsten cathodes and the use of high-power vacuum tubes. The second part of this text loo

  14. Surface acoustic wave devices including Langmuir-Blodgett films (Review)

    Science.gov (United States)

    Plesskii, V. P.

    1991-06-01

    Recent theoretical and experimental research related to the use of Langmuir-Blodgett (LB) films in surface acoustic wave (SAW) devices is reviewed. The sensitivity of the different cuts of quartz and lithium niobate to inertial loading is investigated, and it is shown that some cuts in lithium niobate are twice as sensitive to mass loading than the commonly used YZ-cut. The large variety of organic compounds suitable for the production of LB films makes it possible to create SAW sensors reacting selectively to certain substances. The existing SAW sensors based on LB films are characterized by high sensitivity and fast response.

  15. Langmuir-Blodgett films - From micron to angstrom

    Science.gov (United States)

    Bourdieu, L.; Silberzan, P.; Chatenay, D.

    1991-10-01

    Combining optical microscopy and atomic force microscopy, a complete characterization of Langmuir-Blodgett bilayers made of arachidic acid has been performed. At macroscopic scales, both techniques can be used to control the homogeneity of the transferred films. By atomic force microscopy, roughness and thickness of the bilayers could be determined. These are compatible with a normal orientation of the fully extended aliphatic chains with respect to the substrate. Molecular-resolution images give the first direct experimental evidence for the presence of pairs of dislocations in those systems.

  16. Quantitative data analysis methods for bead-based DNA hybridization assays using generic flow cytometry platforms.

    Science.gov (United States)

    Corrie, S R; Lawrie, G A; Battersby, B J; Ford, K; Rühmann, A; Koehler, K; Sabath, D E; Trau, M

    2008-05-01

    Bead-based assays are in demand for rapid genomic and proteomic assays for both research and clinical purposes. Standard quantitative procedures addressing raw data quality and analysis are required to ensure the data are consistent and reproducible across laboratories independent of flow platform. Quantitative procedures have been introduced spanning raw histogram analysis through to absolute target quantitation. These included models developed to estimate the absolute number of sample molecules bound per bead (Langmuir isotherm), relative quantitative comparisons (two-sided t-tests), and statistical analyses investigating the quality of raw fluorescence data. The absolute target quantitation method revealed a concentration range (below probe saturation) of Cy5-labeled synthetic cytokeratin 19 (K19) RNA of c.a. 1 x 10(4) to 500 x 10(4) molecules/bead, with a binding constant of c.a. 1.6 nM. Raw hybridization frequency histograms were observed to be highly reproducible across 10 triplex assay replicates and only three assay replicates were required to distinguish overlapping peaks representing small sequence mismatches. This study provides a quantitative scheme for determining the absolute target concentration in nucleic acid hybridization reactions and the equilibrium binding constants for individual probe/target pairs. It is envisaged that such studies will form the basis of standard analytical procedures for bead-based cytometry assays to ensure reproducibility in inter- and intra-platform comparisons of data between laboratories. (c) 2008 International Society for Advancement of Cytometry.

  17. Langmuir-Blodgett films of amylose-esters and chiral azo-dyes : structure and second order nonlinear optical behaviour

    NARCIS (Netherlands)

    Schoondorp, Monique Annette

    1992-01-01

    This thesis describes the structure and second order nonlinear optical behaviour of several Langmuir-Blodgett films. Langmuir-Blodgett (LB) films are ultra thin films produced by the Langmuir-Blodgett technique, named after their inventors (Irving Langmuir and Katharina Blodgett).

  18. A three-hybrid system to probe in vivo protein-protein interactions: application to the essential proteins of the RD1 complex of M. tuberculosis.

    Directory of Open Access Journals (Sweden)

    Megha Tharad

    Full Text Available BACKGROUND: Protein-protein interactions play a crucial role in enabling a pathogen to survive within a host. In many cases the interactions involve a complex of proteins rather than just two given proteins. This is especially true for pathogens like M. tuberculosis that are able to successfully survive the inhospitable environment of the macrophage. Studying such interactions in detail may help in developing small molecules that either disrupt or augment the interactions. Here, we describe the development of an E. coli based bacterial three-hybrid system that can be used effectively to study ternary protein complexes. METHODOLOGY/PRINCIPAL FINDINGS: The protein-protein interactions involved in M. tuberculosis pathogenesis have been used as a model for the validation of the three-hybrid system. Using the M. tuberculosis RD1 encoded proteins CFP10, ESAT6 and Rv3871 for our proof-of-concept studies, we show that the interaction between the proteins CFP10 and Rv3871 is strengthened and stabilized in the presence of ESAT6, the known heterodimeric partner of CFP10. Isolating peptide candidates that can disrupt crucial protein-protein interactions is another application that the system offers. We demonstrate this by using CFP10 protein as a disruptor of a previously established interaction between ESAT6 and a small peptide HCL1; at the same time we also show that CFP10 is not able to disrupt the strong interaction between ESAT6 and another peptide SL3. CONCLUSIONS/SIGNIFICANCE: The validation of the three-hybrid system paves the way for finding new peptides that are stronger binders of ESAT6 compared even to its natural partner CFP10. Additionally, we believe that the system offers an opportunity to study tri-protein complexes and also perform a screening of protein/peptide binders to known interacting proteins so as to elucidate novel tri-protein complexes.

  19. International, collaborative assessment of limitations of chromosome-specific probes (CSP) and fluorescent in situ hybridization (FISH): Analysis of expected detections in 73,000 prenatal cases

    Energy Technology Data Exchange (ETDEWEB)

    Evans, M.I.; Henry, G.P.; Miller, W.A. [Wayne State Univ., Detroit, MI (United States)] [and others

    1994-09-01

    FISH and CSP have been proposed to reduce karyotyping need. The purpose of this study was to assess the potential efficacy of CSP-FISH using currently available probes (13, 18, 21, X, & Y) in large, prenatal diagnostic centers. Results (1990-1993) from 7 centers in 4 countries were divided by those expected to be detectable by currently available probes, and those which would be missed assuming 10% probe efficacy. 72,994 karyotypes included 699 trisomy 21`s, 352 trisomy 18`s, 136 trisomy 13`s, 358 sex chromosome aneuploidies, 70 triploidies, and 855 others (translocations, inversions, deletions, markers). Of 2,613 abnormalities, 1,745 would be detectable (66.8%). [Detroit 55.7%, Stockholm 68.3%, Boston 52.6%, Denver 61.3%, Muenster 77.0%, London 84.5%, Philadelphia 69.4%]. Centers with high proportions of referrals for ultrasound anomalies had the highest CSP-FISH positives secondary to increased T 18 & 13. We conclude: (1) 73,000 karyotypes show relatively consistent incidences of the common trisomies, sex chromosome abnormalities, and other chromosome abnormalities among the centers. (2) The proportion expected detectable by FISH-CSP technology varies from 52.6% to 84.5%, averaging 66.8%. (3) 1/3 of the karyotypic abnormalities would be missed, and therefore, replacement of complete karyotyping with FISH would have unacceptably high false-negative rates for routine evaluation. (4) FISH-CSP, while useful when positive for anomalies, is not sufficient when negative to obviate the need for a complete karyotype.

  20. Hybrid opto-chemical doping in Ag nanoparticle-decorated monolayer graphene grown by chemical vapor deposition probed by Raman spectroscopy

    Science.gov (United States)

    Maiti, R.; Haldar, S.; Majumdar, D.; Singha, A.; Ray, S. K.

    2017-02-01

    The novel opto-chemical doping effect in Ag nanoparticle-decorated monolayer graphene grown by chemical vapor deposition has been investigated using Raman spectroscopy for the first time. We used both noble metal nanoparticles and optical excitation, in a hybrid opto-chemical route, to tune the doping level in graphene. Metal nanoparticle-induced chemical effects and laser power-induced substrate effects alter the doping nature of graphene from p- to n-type. Compared with earlier studies, the proposed method significantly lowers the laser intensity required for optical power-dependent doping, resulting in prevention of damage to the sample due to local heating. Some other interesting observations are the enhanced peak intensity in the Raman spectrum of graphene, enhancement of the D-band intensity and the introduction of G-band splitting. This novel, cheap and easily implemented hybrid optical-chemical doping strategy could be very useful for tuning graphene plasmons on the widely used Si/SiO2 substrates for various photonic device applications.

  1. Phase equilibria in model surfactants forming Langmuir monolayers.

    Science.gov (United States)

    Ramírez, E; Santana, A; Cruz, A; López, G E

    2007-12-14

    The study of Langmuir monolayers has generated the attention of researchers because of their unique properties and their not well understood phase equilibrium. These monolayers exhibit interesting phase diagrams where the unusual liquid-liquid equilibrium can be observed for a single component monolayer. Monte Carlo computer simulations in the virtual Gibbs ensemble were used to obtain the phase diagram of Langmuir monolayers. The liquid-vapor and liquid-liquid phase equilibria were considered by constructing the Cailletet-Mathias phase diagrams. By using the Ising model and the rectilinear approximations the identification of the critical properties for both equilibria was determined. These critical parameters were calculated as a function of the strength of the interaction between the surfactant molecules and the aqueous subphase. As a result, we have identified the coexistence between a liquid expanded state (LES)-vapor and the liquid condensed state-LES, in agreement with experimental and theoretical evidence in the literature. We obtained a clear separation of phases and a strong dependence on the strength of the solvent used. Namely, as the interaction between the solvent and the head of the surfactant increases, the critical properties also increase. Equilibrium states were characterized by computing thermodynamic quantities as a function of temperature and solvent strength.

  2. DNA probe for lactobacillus delbrueckii

    Energy Technology Data Exchange (ETDEWEB)

    Delley, M.; Mollet, B.; Hottinger, H. (Nestle Research Centre, Lausanne (Switzerland))

    1990-06-01

    From a genomic DNA library of Lactobacillus delbrueckii subsp. bulgaricus, a clone was isolated which complements a leucine auxotrophy of an Escherichia coli strain (GE891). Subsequent analysis of the clone indicated that it could serve as a specific DNA probe. Dot-blot hybridizations with over 40 different Lactobacillus strains showed that this clone specifically recognized L. delbrueckii subsp. delbrueckii, bulgaricus, and lactis. The sensitivity of the method was tested by using an {alpha}-{sup 32}P-labeled probe.

  3. Langmuir and Langmuir-Blodgett films of capsules of haemoglobin at air/water and solid/air interfaces

    Indian Academy of Sciences (India)

    J Maheshkumar; A Dhathathreyan

    2013-03-01

    Organized assemblies of capsules of haemoglobin (Hb), in the size range of 0.1 to 0.3 in Langmuir films have been studied at air/water interface below and above the isoelectric point. Spread films of these organizates suggest that there is no expulsion of individual particles or particle assemblies at the interface and the particles are stable. Dynamic surface tension and the associated dilational and shear visco-elasticity in these films suggest that the capsules are highly elastic. Multilayer films of the capsules using Langmuir-Blodgett technique have been fabricated by sequential deposition on solid surfaces. These films have been characterized by circular dichroism spectroscopy (CD), atomic force microscopy (AFM), quartz crystal microbalance (QCM) and Fourier transform infrared with reflection absorption spectroscopy (FTIR-RAS). No appreciable change in the secondary structural features of Hb is seen from CD studies indicating the stability of the protein in these organized assemblies. Sizes of these capsules change near the isoelectric point and large swollen multiwalled capsules are formed. The elastic films of capsules of Hb provide a useful post preparation approach for modification of the surface roughness, porosity, and permeability of pre-assembled polypeptide microcapsules.

  4. Interaction between Langmuir and Langmuir-Blodgett films of two calix[4]arenes with aqueous copper and lithium ions.

    Science.gov (United States)

    Supian, Faridah L; Richardson, Tim H; Deasy, Mary; Kelleher, Fintan; Ward, James P; McKee, Vickie

    2010-07-06

    The binding interactions between aqueous copper (Cu(2+)) and lithium (Li(+)) ions and Langmuir monolayers and Langmuir-Blodgett (LB) multilayers have been investigated by studying surface pressure-area (Pi-A) isotherms and surface potential-area (DeltaV-A) behavior in order to find the effective dipole moment, mu(perpendicular), of the calixarene molecules in the uncomplexed and complexed states. The orientation of both calix[4]arenes, namely, 5,11,17,23-tetra-tert-butyl-25,27-diethoxycarbonyl methyleneoxy-26,28-dihydroxycalix[4]arene and 5,17-(9H-fluoren-2-yl)methyleneamino)-11,23-di-tert-butyl-25,27-diethoxycarbonyl methyleneoxy-26,28-dihydroxycalix[4]arene, is such that the plane of the calix ring is parallel with the plane of the water surface regardless of the ion content of the subphase. The Gibbs equation was used to interpret the adsorption of ions with both calix[4]arenes as a function of the concentration. Effective dipole moments have been calculated from surface potential values using the Helmholtz equation. In this work, new LB films have been prepared employing two novel amphiphilic calix[4]arene derivatives bearing different upper rim substituents. Thus, the effect of modifiying the upper rim has been observed. The results have shown that these calixarenes may be useful components of ion sensors.

  5. The Langmuir isotherm: a commonly applied but misleading approach for the analysis of protein adsorption behavior.

    Science.gov (United States)

    Latour, Robert A

    2015-03-01

    The Langmuir adsorption isotherm provides one of the simplest and most direct methods to quantify an adsorption process. Because isotherm data from protein adsorption studies often appear to be fit well by the Langmuir isotherm model, estimates of protein binding affinity have often been made from its use despite that fact that none of the conditions required for a Langmuir adsorption process may be satisfied for this type of application. The physical events that cause protein adsorption isotherms to often provide a Langmuir-shaped isotherm can be explained as being due to changes in adsorption-induced spreading, reorientation, clustering, and aggregation of the protein on a surface as a function of solution concentration in contrast to being due to a dynamic equilibrium adsorption process, which is required for Langmuir adsorption. Unless the requirements of the Langmuir adsorption process can be confirmed, fitting of the Langmuir model to protein adsorption isotherm data to obtain thermodynamic properties, such as the equilibrium constant for adsorption and adsorption free energy, may provide erroneous values that have little to do with the actual protein adsorption process, and should be avoided. In this article, a detailed analysis of the Langmuir isotherm model is presented along with a quantitative analysis of the level of error that can arise in derived parameters when the Langmuir isotherm is inappropriately applied to characterize a protein adsorption process.

  6. How electron two-stream instability drives cyclic Langmuir collapse and continuous coherent emission

    Science.gov (United States)

    Che, Haihong; Goldstein, Melvyn L.; Diamond, Patrick H.; Sagdeev, Roald Z.

    2017-02-01

    Continuous plasma coherent emission is maintained by repetitive Langmuir collapse driven by the nonlinear evolution of a strong electron two-stream instability. The Langmuir waves are modulated by solitary waves in the linear stage and electrostatic whistler waves in the nonlinear stage. Modulational instability leads to Langmuir collapse and electron heating that fills in cavitons. The high pressure is released via excitation of a short-wavelength ion acoustic mode that is damped by electrons and reexcites small-scale Langmuir waves; this process closes a feedback loop that maintains the continuous coherent emission.

  7. The spacing of Langmuir circulation under modest wind

    Institute of Scientific and Technical Information of China (English)

    LI Shuang; SONG Jinbao

    2012-01-01

    Spacing characteristics of Langmuir circulation (LC) are computed by large eddy simulation (LES) model under modest wind.LC is an organized vertical motion,evidenced as buoyant materials forming lines nearly parallel to the wind direction.The horizontal distribution of velocity computed by LES shows clear lines formed by LC.These lines grow and parallel to each other for a while,which we call the stable state,before they finally form Y-junctions.We computed spacing between every two parallel lines by averaging them under the stable state.Statistically,spacing results of 154 tests (seven wind speed cases of 22 test runs each) show high correlations berween spacing and wind speed,as well as mixed layer depth.The relationship of spacing and wind is important for future LC parameterization of upper-ocean mixing.

  8. Stable Langmuir solitons in plasma with diatomic ions

    Directory of Open Access Journals (Sweden)

    M. Dvornikov

    2013-08-01

    Full Text Available We study stable axially and spherically symmetric spatial solitons in plasma with diatomic ions. The stability of a soliton against collapse is provided by the interaction of induced electric dipole moments of ions with the rapidly oscillating electric field of a plasmoid. We derive the new cubic-quintic nonlinear Schrödinger equation, which governs the soliton dynamics and numerically solve it. Then we discuss the possibility of implementation of such plasmoids in realistic atmospheric plasma. In particular, we suggest that spherically symmetric Langmuir solitons, described in the present work, can be excited at the formation stage of long-lived atmospheric plasma structures. The implication of our model for the interpretation of the results of experiments for the plasmoids generation is discussed.

  9. Properties of Langmuir wave bursts associated with magnetic holes

    Science.gov (United States)

    MacDowall, R. J.; Lin, N.; Kellogg, P. J.; Phillips, J. L.; Neugebauer, M.; Balogh, A.; Forsyth, R. J.

    1995-01-01

    The radio and plasma wave receivers on the Ulysses spacecraft have detected thousands of short-duration bursts of waves at approximately the electron plasma frequency. These wave events believed to be Langmuir waves are usually less than approximately 5 minutes in duration. They occur in or at the boundaries of depletions in the magnetic field amplitude known as magnetic holes. Using the 16 sec time resolution provided by the plasma frequency receiver, it is possible to examine the density structure inside of magnetic holes. Even higher time resolutions are sometimes available from the radio receiver data. The Ulysses observations show that these wave bursts occur more frequently at high heliographic latitudes; the occurrence rates depend on both latitude and distance from the Sun. We review the statistics for the wave events, compare them to magnetic and plasma parameters, and review the reasons for the more frequent occurrence at high heliographic latitudes.

  10. Quasiperiodic behavior in beam-driven strong Langmuir turbulence

    Science.gov (United States)

    Robinson, P. A.; Newman, D. L.

    1989-01-01

    The evolution of unmagnetized beam-driven strong Langmuir turbulence is studied in two dimensions by numerically integrating the Zakharov equations for systems pumped by monochromatic and broadband negative-damping drivers with nonzero central wavenumber. Long-time statistically steady states are reached for which the dependence of the evolution on the driver wavenumber, growth rate, and bandwidth is examined in detail. For monochromatic drivers, a quasiperiodic cycle is found to develop if the driver wavenumber is sufficiently large. The characteristic frequency of the quasiperiodic cycle and the average system energy are both approximately proportional to the growth rate. Broadening of the driver in wavenumber tends to degrade the system-wide coherence of the cycle, but its main features appear to survive on the scale of the coherence length of the driver.

  11. Langmuir-like waves and radiation in planetary foreshocks

    Science.gov (United States)

    Cairns, Iver H.; Robinson, P. A.; Anderson, R. R.; Gurnett, D. A.; Kurth, W. S.

    1995-01-01

    The basic objectives of this NASA Grant are to develop theoretical understandings (tested with spacecraft data) of the generation and characteristics of electron plasma waves, commonly known as Langmuir-like waves, and associated radiation near f(sub p) and 2f(sub p) in planetary foreshocks. (Here f(sub p) is plasma frequency.) Related waves and radiation in the source regions of interplanetary type III solar radio bursts provide a simpler observational and theoretical context for developing and testing such understandings. Accordingly, applications to type III bursts constitute a significant fraction of the research effort. The testing of the new Stochastic Growth Theory (SGT) for type III bursts, and its extension and testing for foreshock waves and radiation, constitutes a major longterm strategic goal of the research effort.

  12. TRANSPOSICION DIDACTICA DEL MODELO CIENTIFICO DE LEWIS-LANGMUIR

    OpenAIRE

    Janneth Isabel Herreño Chaves; Rómulo Gallego Badillo; Royman Pérez Miranda

    2010-01-01

    Este artículo presenta las conclusiones obtenidas en un proyecto de investigación, en el que se auscultó la transposición didáctica que hacen del modelo de Lewis-Langmuir, diez de los textos para la enseñanza de la química más empleados por algunos profesores universitarios y de educación secundaria. Para el análisis se tuvo en cuenta lo histórico, lo epistemológico y lo didáctico. Los resultados muestran que en estos textos no hay referencia a la historia de la construcción del modelo y solo...

  13. Probing of Ehrlich ascites carcinoma cell using in situ aggregates of Au-NPs as SERS label created by plasmon exciting hybrid- TEM*11 laser mode

    Science.gov (United States)

    Kumar, R.; Mehta, D. S.; Saraswati, S.; Shakher, C.

    2012-02-01

    Apart from commonly employed target-specific labeling/adsorption of antibodies over Au-NPs surface for the creation of localized aggregates, an alternative approach using optical tweezers (OT) driven by hybrid-TEM*11 mode has been devised and exploited for in vitro detection of Ehrlich ascites carcinoma cells (EAC) relying on enhanced scattering. Intra-cavity generated spatially featured asymmetric (SFA) laser beam (λ = 532 nm) has effected simultaneous trapping of mice-EAC cells and in-situ crowd/assembly of incubated Au-NPs/small gold nano-aggregates (created from two or more individual Au-NPs). Relatively larger focus spot created by tightly focused SFA beam than frequently employed Gaussian-mode in OT has offered an extended working area and hence dilute heating has taken care of EAC cells. GNA improves significantly the sensitivity of diagnostics relying on scattered light and the safety and efficacy of therapeutic nanotechnologies for the diseases of cancer and vascular system in medicine.

  14. PEGylated hybrid ytterbia nanoparticles as high-performance diagnostic probes for in vivo magnetic resonance and X-ray computed tomography imaging with low systemic toxicity.

    Science.gov (United States)

    Liu, Zhen; Pu, Fang; Liu, Jianhua; Jiang, Liyan; Yuan, Qinghai; Li, Zhengqiang; Ren, Jinsong; Qu, Xiaogang

    2013-05-21

    Novel nanoparticulate contrast agents with low systemic toxicity and inexpensive character have exhibited more advantages over routinely used small molecular contrast agents for the diagnosis and prognosis of disease. Herein, we designed and synthesized PEGylated hybrid ytterbia nanoparticles as high-performance nanoprobes for X-ray computed tomography (CT) imaging and magnetic resonance (MR) imaging both in vitro and in vivo. These well-defined nanoparticles were facile to prepare and cost-effective, meeting the criteria as a biomedical material. Compared with routinely used Iobitridol in clinic, our PEG-Yb2O3:Gd nanoparticles could provide much significantly enhanced contrast upon various clinical voltages ranging from 80 kVp to 140 kVp owing to the high atomic number and well-positioned K-edge energy of ytterbium. By the doping of gadolinium, our nanoparticulate contrast agent could perform perfect MR imaging simultaneously, revealing similar organ enrichment and bio-distribution with the CT imaging results. The super improvement in imaging efficiency was mainly attributed to the high content of Yb and Gd in a single nanoparticle, thus making these nanoparticles suitable for dual-modal diagnostic imaging with a low single-injection dose. In addition, detailed toxicological study in vitro and in vivo indicated that uniformly sized PEG-Yb2O3:Gd nanoparticles possessed excellent biocompatibility and revealed overall safety.

  15. Langmuir-Blodgett assembly of visible light responsive TiO2 nanotube arrays/graphene oxide heterostructure

    Science.gov (United States)

    Chen, Ying; Gao, Hongyan; Wei, Danming; Dong, Xinju; Cao, Yan

    2017-01-01

    The hybrid nanocomposites of titanium dioxide (TiO2) with graphene oxide (GO) have recently garnered much attention as electronic devices, energy conversion devices, photocatalysts and other applications. In this study, Langmuir-Blodgett (LB) assembly method was firstly reported to prepare a TiO2 nanotube arrays (TNA)-GO heterostructure. The as-prepared TNA-GO sample was characterized by X-ray diffraction, Raman spectra, scanning electron microscopy, transmission electron microscopy, energy dispersive X-ray spectroscopy and X-ray photoelectron spectroscopy. The promising characteristics of this TNA-GO material, the inexpensive, nontoxic and highly visible-light responsiveness, may raise the potential uses in many, various photocatalytic applications.

  16. Design and analysis of mismatch probes for long oligonucleotide microarrays

    Energy Technology Data Exchange (ETDEWEB)

    Deng, Ye; He, Zhili; Van Nostrand, Joy D.; Zhou, Jizhong

    2008-08-15

    Nonspecific hybridization is currently a major concern with microarray technology. One of most effective approaches to estimating nonspecific hybridizations in oligonucleotide microarrays is the utilization of mismatch probes; however, this approach has not been used for longer oligonucleotide probes. Here, an oligonucleotide microarray was constructed to evaluate and optimize parameters for 50-mer mismatch probe design. A perfect match (PM) and 28 mismatch (MM) probes were designed for each of ten target genes selected from three microorganisms. The microarrays were hybridized with synthesized complementary oligonucleotide targets at different temperatures (e.g., 42, 45 and 50 C). In general, the probes with evenly distributed mismatches were more distinguishable than those with randomly distributed mismatches. MM probes with 3, 4 and 5 mismatched nucleotides were differentiated for 50-mer oligonucleotide probes hybridized at 50, 45 and 42 C, respectively. Based on the experimental data generated from this study, a modified positional dependent nearest neighbor (MPDNN) model was constructed to adjust the thermodynamic parameters of matched and mismatched dimer nucleotides in the microarray environment. The MM probes with four flexible positional mismatches were designed using the newly established MPDNN model and the experimental results demonstrated that the redesigned MM probes could yield more consistent hybridizations. Conclusions: This study provides guidance on the design of MM probes for long oligonucleotides (e.g., 50 mers). The novel MPDNN model has improved the consistency for long MM probes, and this modeling method can potentially be used for the prediction of oligonucleotide microarray hybridizations.

  17. Design and analysis of mismatch probes for long oligonucleotide microarrays

    Energy Technology Data Exchange (ETDEWEB)

    Deng, Ye; He, Zhili; Van Nostrand, Joy D.; Zhou, Jizhong

    2008-08-15

    Nonspecific hybridization is currently a major concern with microarray technology. One of most effective approaches to estimating nonspecific hybridizations in oligonucleotide microarrays is the utilization of mismatch probes; however, this approach has not been used for longer oligonucleotide probes. Here, an oligonucleotide microarray was constructed to evaluate and optimize parameters for 50-mer mismatch probe design. A perfect match (PM) and 28 mismatch (MM) probes were designed for each of ten target genes selected from three microorganisms. The microarrays were hybridized with synthesized complementary oligonucleotide targets at different temperatures (e.g., 42, 45 and 50 C). In general, the probes with evenly distributed mismatches were more distinguishable than those with randomly distributed mismatches. MM probes with 3, 4 and 5 mismatched nucleotides were differentiated for 50-mer oligonucleotide probes hybridized at 50, 45 and 42 C, respectively. Based on the experimental data generated from this study, a modified positional dependent nearest neighbor (MPDNN) model was constructed to adjust the thermodynamic parameters of matched and mismatched dimer nucleotides in the microarray environment. The MM probes with four flexible positional mismatches were designed using the newly established MPDNN model and the experimental results demonstrated that the redesigned MM probes could yield more consistent hybridizations. Conclusions: This study provides guidance on the design of MM probes for long oligonucleotides (e.g., 50 mers). The novel MPDNN model has improved the consistency for long MM probes, and this modeling method can potentially be used for the prediction of oligonucleotide microarray hybridizations.

  18. Indium-chlorine and gallium-chlorine tetrasubstituted phthalocyanines in a bulk system, Langmuir monolayers and Langmuir-Blodgett nanolayers--spectroscopic investigations.

    Science.gov (United States)

    Bursa, B; Wróbel, D; Biadasz, A; Kędzierski, K; Lewandowska, K; Graja, A; Szybowicz, M; Durmuş, M

    2014-07-15

    The paper deals with spectroscopic characterization of metallic phthalocyanines (Pc's) (indium and gallium) complexed with chlorine and substituted with four benzyloxyphenoxy peripheral groups in bulk systems, 2D Langmuir monolayers and Langmuir-Blodgett nanolayers. An influence of the molecular structure of dyes (the presence of metal and of substitutes attached to the phthalocyanine macroring) on the in situ measurements of light absorption is reported. Molecular arrangement of the phthalocyanine molecular skeleton in the Langmuir monolayers on water substrate and in the Langmuir-Blodgett nanolayers is evaluated. A comparison of the light absorption spectra of the phthalocyanine monolayers with the spectra of the dyes in solution supports the existence of dye aggregates in the monolayer. It was shown that the type of dye aggregates (oblique and H types) depends markedly on the dye molecular structures. The NIR-IR, IR reflection-absorption and Raman spectra are also monitored for Langmuir-Blodgett nanolayers in non-polarized and polarized light. It was shown that the dye molecules in the Langmuir-Blodgett layers are oriented nearly vertically with respect to a gold substrate.

  19. Probing the interfaces between the social sciences and social-ecological resilience: insights from integrative and hybrid perspectives in the social sciences

    Directory of Open Access Journals (Sweden)

    Samantha Stone-Jovicich

    2015-06-01

    Full Text Available Social scientists, and scholars in related interdisciplinary fields, have critiqued resilience thinking's oversimplification of social dimensions of coupled social-ecological systems. Resilience scholars have countered with "where is the ecology" in social analyses? My aim is to contribute to current efforts to strengthen inter- and transdisciplinary debate and inquiry between the social-ecological resilience community and the social sciences. I synthesize three social science perspectives, which stress the complex, dynamic, and multiscalar interconnections between the biophysical and social realms in explaining social-environmental change, and which place both the social and ecology centre stage in their analyses: materio-spatial world systems analysis, critical realist political ecology, and actor-network theory. By integrating, in a nondeterministic and nonessentialist manner, the biophysical environment into social inquiries (integrative approaches or by altogether abolishing the ecology/nature and human/culture divide (hybrid perspectives, these three social-science perspectives are well placed to foster stronger inter- and transdisciplinary ties with social-ecological resilience. Materio-spatial world systems analysis is highly compatible with resilience thinking. The emphasis on world systems structures and processes offers the potential to enrich resilience analyses of global environmental change, global governance and stewardship, planetary boundaries, and multiscale resilience. Critical realist political ecology offers avenues for more in-depth interdisciplinary inquiries around local/traditional/indigenous knowledge systems and power. It also challenges resilience scholars to incorporate critical analyses of resilience's core concepts and practices. Actor-network theory proposes a very different starting point for understanding and assessing social-ecological resilience. Its focus on "resilience-in-the-making" offers unique insights

  20. Using proper regression methods for fitting the Langmuir model to sorption data

    Science.gov (United States)

    The Langmuir model, originally developed for the study of gas sorption to surfaces, is one of the most commonly used models for fitting phosphorus sorption data. There are good theoretical reasons, however, against applying this model to describe P sorption to soils. Nevertheless, the Langmuir model...

  1. Macroscopic alignment of graphene stacks by Langmuir-Blodgett deposition of amphiphilic hexabenzocoronenes

    DEFF Research Database (Denmark)

    Laursen, B.W.; Nørgaard, K.; Reitzel, N.;

    2004-01-01

    e present structural studies of Langmuir V and Langmuir-Blodgett (LB) films of new amphiphilic hexa-peri-hexabenzocoronene (HBC) discotics, carrying five branched alkyl side chains and one polar group. The polar group is either a carboxylic acid moiety or an electron acceptor moiety (anthraquinone...

  2. Evidence for magnetic ordering in ultrathin gadolinium Langmuir-Blodgett films

    DEFF Research Database (Denmark)

    Tishin, A.M.; Koksharov, Yu.A.; Bohr, Jakob

    1997-01-01

    Magnetic ultrathin Langmuir-Blodgett films containing rare earths are investigated. Electron paramagnetic resonance measurements suggest the possible existence of a transition from a paramagnetic to a magnetically ordered state. In Langmuir-Blodgett films with one hundred layers of Gd, a transiti...

  3. Revisiting a Statistical Shortcoming When Fitting the Langmuir Model to Sorption Data

    Science.gov (United States)

    The Langmuir model is commonly used for describing sorption behavior of reactive solutes to surfaces. Fitting the Langmuir model to sorption data requires either the use of nonlinear regression or, alternatively, linear regression using one of the linearized versions of the model. Statistical limit...

  4. The production of PEO polymer brushes via Langmuir-Blodgett and Langmuir-Schaeffer methods: incomplete transfer and its consequences.

    Science.gov (United States)

    de Vos, Wiebe M; de Keizer, Arie; Kleijn, J Mieke; Cohen Stuart, Martien A

    2009-04-21

    Using fixed-angle ellipsometry, we investigate the degree of mass transfer upon vertically dipping a polystyrene surface through a layer of a polystyrene-poly(ethylene oxide) (PS-PEO) block copolymer at the air water interface (Langmuir-Blodgett or LB transfer). The transferred mass is proportional to the PS-PEO grafting density at the air-water interface, but the transferred mass is not equal to the mass at the air-water interface. We find that depending on the chain length of the PEO block only a certain fraction of the polymers at the air-water interface is transferred to the solid surface. For the shortest PEO chain length (PS36-PEO148), the mass transfer amounts to 94%, while for longer chain lengths (PS36-PEO370 and PS38-PEO770), a transfer of, respectively 57% and 19%, is obtained. We attribute this reduced mass transfer to a competition for the PS surface between the PEO block and the PS block. Atomic force microscopy shows that after transfer the material is evenly spread over the surface. However, upon a short heating of these transferred layers (95 degrees C, 5 min) a dewetting of the PS-PEO layer takes place. These results have a significant impact on the interpretation of the results in a number of papers in which the above-described transfer method was used to produce PEO polymer brushes, in a few cases in combination with heating. We briefly review these papers and discuss their main results in light of this new information. Furthermore, we show that, by using Langmuir-Schaeffer (LS, horizontal) dipping, much higher mass transfers can be reached than with the LB method. When the LB or LS methods are carefully applied, it is a very powerful technique to produce PEO brushes, as it gives full control over both the grafting density and the chain length.

  5. Electron energy distribution functions and negative ion concentrations in tandem and hybrid multicusp negative hydrogen ion sources

    Energy Technology Data Exchange (ETDEWEB)

    Hopkins, M.B. (Dublin City Univ. (Ireland). Dept. of Physics); Bacal, M. (Ecole Polytechnique, 91 - Palaiseau (France). Lab. de Physique des Milieux Ionises); Graham, W.G. (Queen' s Univ., Belfast, Northern Ireland (UK). School of Mathematics and Physics)

    1991-03-14

    The second derivative of a Langmuir probe characteristic is used to establish the electron energy distribution function (EEDF) in both a tandem and hybrid multicusp H{sup -} ion source. Moveable probes are used to establish the spatial variation of the EEDF. The negative ion density is measured by laser induced photo-detachment. In the case of the hybrid source the EEDF consists of a cold Maxwellian in the central region of the source; the electron temperature increases with increasing discharge current (rising from 0.3 eV at 1 A to 1.2 eV at 50 A when the pressure is 0.4 Pa). A hot electron tail exists in the EEDF of the driver region adjacent to each filament which is shown to consist of a distinct group of primary electrons at low pressure (0.08 Pa) but becomes degraded mainly through inelastic collisions at higher pressures (0.27 Pa). The tandem source, on the other hand, has a single driver region which extends throughout the central region. The primary electron confinement times are much longer so that even at the lowest pressure considered (0.07 Pa) the primaries are degraded. In both cases the measured EEDF at specific locations and values of discharge operating parameters are used to establish the rate coefficients for the processes of importance in H{sup -} production and destruction. (author).

  6. Identifying members of the domain Archaea with rRNA-targeted oligonucleotide probes.

    Science.gov (United States)

    Burggraf, S; Mayer, T; Amann, R; Schadhauser, S; Woese, C R; Stetter, K O

    1994-09-01

    Two 16S rRNA-targeted oligonucleotide probes were designed for the archaeal kingdoms Euryachaeota and Crenarchaeota. Probe specificities were evaluated by nonradioactive dot blot hybridization against selected reference organisms. The successful application of fluorescent-probe derivatives for whole-cell hybridization required organism-specific optimizations of fixation and hybridization conditions to assure probe penetration and morphological integrity of the cells. The probes allowed preliminary grouping of three new hyperthermophilic isolates. Together with other group-specific rRNA-targeted oligonucleotide probes, these probes will facilitate rapid in situ monitoring of the populations present in hydrothermal systems and support cultivation attempts.

  7. Statistical behavior of Langmuir wave packets observed inside the electron foreshock of Saturn

    Science.gov (United States)

    Pisa, David; Hospodarsky, George B.; Kurth, Willam S.; Gurnett, Donald A.; Santolik, Ondrej; Soucek, Jan

    2014-05-01

    We present a statistical study of Langmuir wave packets in the Saturnian foreshock using Cassini Wideband Receiver electric field waveforms. We analyzed all foreshock crossings from 2004 to 2012 using an automatic method for the identification of Langmuir wave signatures. Observed waveforms exhibit a shape similar to Langmuir solitons or monochromatic wave packets with a slowly varying envelope. This is in agreement with a variety of previous observations of Langmuir waves in the terrestrial foreshock and associated with Type III radio bursts. We determined the peak amplitude for all wave packets, and found the distributions of amplitude appeared to follow a power law with P(E) ≈ E-2. We confirm that the most intense electron plasma waves are observed near the foreshock boundary. We estimated the energy density ratio to be about one order below previously reported values at Saturn. Finally, we discuss the properties of the Langmuir wave packets at different locations in the foreshock.

  8. Probe Storage

    NARCIS (Netherlands)

    Gemelli, Marcellino; Abelmann, Leon; Engelen, Johan B.C.; Khatib, Mohammed G.; Koelmans, Wabe W.; Zaboronski, Olog; Campardo, Giovanni; Tiziani, Federico; Laculo, Massimo

    2011-01-01

    This chapter gives an overview of probe-based data storage research over the last three decades, encompassing all aspects of a probe recording system. Following the division found in all mechanically addressed storage systems, the different subsystems (media, read/write heads, positioning, data chan

  9. Cultural probes

    DEFF Research Database (Denmark)

    Madsen, Jacob Østergaard

    2016-01-01

    The aim of this study was thus to explore cultural probes (Gaver, Boucher et al. 2004), as a possible methodical approach, supporting knowledge production on situated and contextual aspects of occupation.......The aim of this study was thus to explore cultural probes (Gaver, Boucher et al. 2004), as a possible methodical approach, supporting knowledge production on situated and contextual aspects of occupation....

  10. Study of the aggregation of human insulin Langmuir monolayer.

    Science.gov (United States)

    Liu, Wei; Johnson, Sheba; Micic, Miodrag; Orbulescu, Jhony; Whyte, Jeffrey; Garcia, Andrew R; Leblanc, Roger M

    2012-02-21

    The human insulin (HI) Langmuir monolayer at the air-water interface was systematically investigated in the presence and absence of Zn(II) ions in the subphase. HI samples were dissolved in acidic (pH 2) and basic (pH 9) aqueous solutions and then spread at the air-water interface. Spectroscopic data of aqueous solutions of HI show a difference in HI conformation at different pH values. Moreover, the dynamics of the insulin protein showed a dependence on the concentration of Zn(II) ions. In the absence of Zn(II) ions in the subphase, the acidic and basic solutions showed similar behavior at the air-water interface. In the presence of Zn(II) ions in the subphase, the surface pressure-area and surface potential-area isotherms suggest that HI may aggregate at the air-water interface. It was observed that increasing the concentration of Zn(II) ions in the acidic (pH 2) aqueous solution of HI led to an increase of the area at a specific surface pressure. It was also seen that the conformation of HI in the basic (pH 9) medium had a reverse effect (decrease in the surface area) with the increase of the concentration of Zn(II) ions in solution. From the compression-decompression cycles we can conclude that the aggregated HI film at air-water interface is not stable and tends to restore a monolayer of monomers. These results were confirmed from UV-vis and fluorescence spectroscopy analysis. Infrared reflection-absorption and circular dichroism spectroscopy techniques were used to determine the secondary structure and orientation changes of HI by zinc ions. Generally, the aggregation process leads to a conformation change from α-helix to β-strand and β-turn, and at the air-water interface, the aggregation process was likewise seen to induce specific orientations for HI in the acidic and basic media. A proposed surface orientation model is presented here as an explanation to the experimental data, shedding light for further research on the behavior of insulin as a Langmuir

  11. Photonics at the frontiers. Generation of few-cycle light pulses via NOPCPA and real-time probing of charge transfer in hybrid photovoltaics

    Energy Technology Data Exchange (ETDEWEB)

    Herrmann, Daniel

    2011-11-11

    this thesis for the first time succeeded to resolve the photoinduced charge-transfer in the conjugate polymer polythiophene and in hybrid polythiophene/silicon solar cells in real time. Thereby a controverse debate about the nature of the primary photoexcitation in organic semiconductors is resolved: Excitons dissociate with 140 fs time constant to polarons (charge carriers). Deciding parameters (for instance structural order, charge-carrier mobility) for the efficiency of the generation and extraction of free charge carriers can be determined. Further ultrashort-time experiments at novel organic solar cells have here been begun and indicated.

  12. Magnetic volcanos in gadolinium Langmuir-Blodgett films

    Energy Technology Data Exchange (ETDEWEB)

    Tishin, A.M. E-mail: amt@mailaps.org; Snigirev, O.V.; Khomutov, G.B.; Gudoshnikov, S.A.; Bohr, J

    2001-09-01

    Magnetic, structural and electronic properties of Langmuir-Blodgett films with incorporated Gd{sup 3+} ions has been detected using a scanning DC SQUID microscope, scanning electron microscope and X-ray diffraction. The magnetic images of 28 and 50 layer thick films at 77 K have been obtained after in-plane and out-of-plane pre-magnetization in a field of 1.4 T at 300 K. Randomly placed 'magnetic volcanos' with a remanent magnetic moment of the order of 10{sup -13} A m{sup 2} was observed. A decay of the remanent magnetization with a characteristic time of about 120 h was observed. It is suggested that the magnetic order is relatively long ranged, and that topological defects (vortices) lead to the observed out-of-plane field lines, and are responsible for the magnetic volcanos. Finally, it is hypothesized that a similar topology of field lines is responsible for superconductivity as observed in ceramic high-T{sub C} superconductors.

  13. Langmuir-Blodgett films of ethylenedithiotetrathiafulvalene derivative containing hydroxyl groups

    Energy Technology Data Exchange (ETDEWEB)

    Sawant, Shilpa N., E-mail: stawde@barc.gov.i [Chemistry Division, BARC, Trombay-400085 (India); Kulshreshtha, S.K. [Chemistry Division, BARC, Trombay-400085 (India); Yakhmi, J.V. [Technical Physics and Prototype Engineering Division, BARC, Trombay-400085 (India); Doble, Mukesh [Department of Biotechnology, IIT Madras, Chennai-600 036 (India); Miyazaki, Akira; Enoki, Toshiaki [Department of Chemistry, Tokyo Institute of Technology, Ookayama, Meguro-ku, Tokyo, 152-8551 (Japan)

    2010-08-02

    Langmuir-Blodgett (LB) films of an ethylenedithiotetrathiafulvalene (EDT-TTF) derivative containing hydroxyl groups, 4, 5-bis(11-hydroxyundecylthio)-4', 5'-ethylenedithiotetrathiafulvalene were deposited without using stabilizer molecules. Doping of the film with iodine leads to oxidation of EDT-TTF moiety as evidenced by UV-vis and IR spectroscopy. X-ray diffraction studies reveal the presence of layered arrangement of the EDT-TTF derivative molecules in the LB film. Cyclic voltammetry studies indicate that the electrochemical oxidation of the EDT-TTF derivative in its LB film is irreversible. Due to the insulating nature of the alkyl chains, only the first layer of the LB film was found to be redox-active. The electrical conductivity of the 25 layer LB film was found to increase by two orders of magnitude on doping with iodine. On equilibrating the doped film in air, the conductivity gradually reduced with time and finally reached the conductivity of undoped film. This reversibility could be because of the steric hindrance induced by the two long alkyl groups. The alkyl chains help in rendering the EDT-TTF molecule amiable to LB film formation but are found to reduce the electrical conductivity of the films and also cause instability of the doped state. The hydroxyl groups at the end of the alky chain impart amphiphilic nature to the molecules and help in stabilizing the film at the air-water interface.

  14. Molecular Dynamic Studies on Langmuir Monolayers of Stearic Acid

    Institute of Scientific and Technical Information of China (English)

    KONG Chui-peng; ZHANG Hong-xing; ZHAO Zeng-xia; ZHENG Qing-chuan

    2013-01-01

    Compression isotherm for stearic acid was obtained by means of molecular dynamic simulation and compared to experimentally measured values for the Langmuir monolayers.Compared to the previous simulation,the present simulation has provided a method to reproduce the compression of the monolayer.The result is consistent with other experimental results.By analyzing the alkyl tails,the configuration of stearic acid molecules during the compression process was studied and a uniform monolayer was obtained after compression.Stearic acid molecules were observed to form fine organized monolayer from completely random structure.Hexatic order of the arrangement has been identified for the distribution of stearic acid molecules in the monolayer.At the end of the compression,the stearic acid molecules were tightly packed in the gap of two other molecules.At last,the hydrogen bonds in the system were analyzed.The main hydrogen bonds were from stearic acid-water interaction and their intensities constantly decreased with the decreased of surface area per molecule.The weak hydrogen bond interaction between stearic acid molecules may be the reason of easy collapse.

  15. LES of Langmuir supercells under constant crosswind tidal forcing

    Science.gov (United States)

    Walker, Rachel; Zhang, Jie; Juha, Mario; Gosch, Chester; Tejada-Martinez, Andres

    2015-11-01

    We report on the impact of a crosswind tidal current on Langmuir supercells (LSCs) in shallow water computed via LES. LSCs consist of parallel counter rotating vortices engulfing the water column in unstratified conditions. These cells have been observed in shallow continental shelf regions of ~15 meters depth during the passage of storms. The cells are aligned roughly in the wind direction and are generated by the interaction of the wind-driven shear current with the Stokes drift velocity induced by surface gravity waves. Without tides, LES reveals that the typical crosswind width of a LSC is ~4 times the water column depth (H). Under a relatively weak crosswind tidal current (weaker than the downwind current), the constant crosswind tidal forcing applied causes a merging of cells leading to cells of width ~8H. The opposite occurs under a crosswind tidal current stronger than the downwind current as the constant crosswind tidal force is able to break up the LSCs giving rise to smaller scale cells with different turbulent structure than that associated with LSC. Statistics of the turbulence during strong and weak crosswind tides will be contrasted and implications of an oscillating crosswind tidal force will be discussed. Support from the US National Science Foundation and the Gulf of Mexico Research Initiative is gratefully acknowledged.

  16. Photopatterning of heterostructured polymer Langmuir-Blodgett films

    Energy Technology Data Exchange (ETDEWEB)

    Li Tiesheng [Department of Chemistry, Key Lab of Biological Chemistry and Organic Chemistry of Henan Province, Zhengzhou University, Daxue road 75, Zhengzhou 450052 (China); Key Lab of Advanced Information Nano-materials of Zhengzhou, Daxue road 75, Zhengzhou 450052 (China)], E-mail: lts34@zzu.edu.cn; Mitsuishi, Masaya [Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Aobaku, 2-1-1, Katahira, Sendai (Japan); Miyashita, Tokuji [Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Aobaku, 2-1-1, Katahira, Sendai (Japan)], E-mail: miya@tagen.tohoku.ac.jp

    2008-02-29

    Heterostructured polymer Langmuir-Blodgett (LB) film prepared by using poly(N-dodecylacrylamide-co-t-butyl 4-vinylphenyl carbonate) (p(DDA-tBVPC53)) and poly(N-neopentyl methacrylamide-co-9-anthrylmethyl methacrylate) (p(nPMA-AMMA10)) polymer LB films which can act as photogenerator layers were investigated. Patterns with a resolution of 0.75 {mu}m were obtained on heterostructured polymer LB films composed of 4 layers of p(nPMA-AMMA10) LB film (top layers) and 40 layers of p(DDA-tBVPC53) LB film (under layers) on a silicon wafer by deep UV irradiation followed by development with 1% tetramethylammonium hydroxide aqueous solution. The sensitivity of the heterostructured polymer LB films was improved without loss of the resolution compared with p(DDA-tBVPC53) LB film. The etch resistance of the heterostructured polymer LB films was sufficiently good to allow patterning of a copper film suitable for photomask fabrication.

  17. Oleic acid disorders stratum corneum lipids in Langmuir monolayers.

    Science.gov (United States)

    Mao, Guangru; VanWyck, Dina; Xiao, Xin; Mack Correa, M Catherine; Gunn, Euen; Flach, Carol R; Mendelsohn, Richard; Walters, Russel M

    2013-04-16

    Oleic acid (OA) is well-known to affect the function of the skin barrier. In this study, the molecular interactions between OA and model stratum corneum (SC) lipids consisting of ceramide, cholesterol, and palmitic acid (PA) were investigated with Langmuir monolayer and associated techniques. Mixtures with different OA/SC lipid compositions were spread at the air/water interface, and the phase behavior was tracked with surface pressure-molecular area (π-A) isotherms. With increasing OA levels in the monolayer, the films became more fluid and more compressible. The thermodynamic parameters derived from π-A isotherms indicated that there are preferential interactions between OA and SC lipids and that films of their mixtures were thermodynamically stable. The domain structure and lipid conformational order of the monolayers were studied through Brewster angle microscopy (BAM) and infrared reflection absorption spectroscopy (IRRAS), respectively. Results indicate that lower concentrations of OA preferentially mix with and disorder the ceramide-enriched domains, followed by perturbation of the PA-enriched domains and disruption of SC lipid domain separation at higher OA levels.

  18. The Modeling of Pulmonary Particulate Matter Transport Using Langmuir Monolayers

    Science.gov (United States)

    Eaton, Jeremy M.

    The effects of a barrier in proximity to the air-water interface on the dynamics of a Langmuir monolayer system are observed. A monolayer of Survanta, bovine lung surfactant, is deposited onto the interface of an aqueous buffer solution. Polystyrene particles one micron in diameter and tagged with fluorescent carboxylate groups are distributed evenly throughout the monolayer surface. The bead-monolayer system is compressed and expanded to induce folding. A polydimethylsiloxane (PDMS) substrate is placed below the monolayer in the buffer solution to study interactions between the folding monolayer and a barrier. The presence of the substrate is shown to shift surface pressure-area isotherms toward regions of lower area by an average of 8.9 mN/m. The surface of the PDMS substrate can be imaged using fluorescence microscopy to detect the presence of particles or surfactant that may have been transported there from the air-water interface during folding. Images show the transferral of particles and monolayer together suggesting the pinch-off of a fold or the direct interaction of a fold with the barrier.

  19. High frequency ion sound waves associated with Langmuir waves in type III radio burst source regions

    Directory of Open Access Journals (Sweden)

    G. Thejappa

    2004-01-01

    Full Text Available Short wavelength ion sound waves (2-4kHz are detected in association with the Langmuir waves (~15-30kHz in the source regions of several local type III radio bursts. They are most probably not due to any resonant wave-wave interactions such as the electrostatic decay instability because their wavelengths are much shorter than those of Langmuir waves. The Langmuir waves occur as coherent field structures with peak intensities exceeding the Langmuir collapse thresholds. Their scale sizes are of the order of the wavelength of an ion sound wave. These Langmuir wave field characteristics indicate that the observed short wavelength ion sound waves are most probably generated during the thermalization of the burnt-out cavitons left behind by the Langmuir collapse. Moreover, the peak intensities of the observed short wavelength ion sound waves are comparable to the expected intensities of those ion sound waves radiated by the burnt-out cavitons. However, the speeds of the electron beams derived from the frequency drift of type III radio bursts are too slow to satisfy the needed adiabatic ion approximation. Therefore, some non-linear process such as the induced scattering on thermal ions most probably pumps the beam excited Langmuir waves towards the lower wavenumbers, where the adiabatic ion approximation is justified.

  20. Surface chemistry of lipid raft and amyloid Aβ (1-40) Langmuir monolayer.

    Science.gov (United States)

    Thakur, Garima; Pao, Christine; Micic, Miodrag; Johnson, Sheba; Leblanc, Roger M

    2011-10-15

    Lipid rafts being rich in cholesterol and sphingolipids are considered to provide ordered lipid environment in the neuronal membranes, where it is hypothesized that the cleavage of amyloid precursor protein (APP) to Aβ (1-40) and Aβ (1-42) takes place. It is highly likely that the interaction of lipid raft components like cholesterol, sphingomylein or GM1 leads to nucleation of Aβ and results in aggregation or accumulation of amyloid plaques. One has investigated surface pressure-area isotherms of the lipid raft and Aβ (1-40) Langmuir monolayer. The compression-decompression cycles and the stability of the lipid raft Langmuir monolayer are crucial parameters for the investigation of interaction of Aβ (1-40) with the lipid raft Langmuir monolayer. It was revealed that GM1 provides instability to the lipid raft Langmuir monolayer. Adsorption of Aβ (1-40) onto the lipid raft Langmuir monolayer containing neutral (POPC) or negatively charged phospholipid (DPPG) was examined. The adsorption isotherms revealed that the concentration of cholesterol was important for adsorption of Aβ (1-40) onto the lipid raft Langmuir monolayer containing POPC whereas for the lipid raft Langmuir monolayer containing DPPG:cholesterol or GM1 did not play any role. In situ UV-vis absorption spectroscopy supported the interpretation of results for the adsorption isotherms.

  1. From Langmuir kinetics to first- and second-order rate equations for adsorption.

    Science.gov (United States)

    Liu, Yu; Shen, Liang

    2008-10-21

    So far, the first- and second-order kinetic equations have been most frequently employed to interpret adsorption data obtained under various conditions, whereas the theoretical origins of these two equations still remain unknown. Using the Langmuir kinetics as a theoretical basis, this study showed that the Langmuir kinetics can be transformed to a polynomial expression of dtheta t /d t = k 1(theta e - theta t ) + k 2(theta e - theta t ) (2), a varying-order rate equation. The sufficient and necessary conditions for simplification of the Langmuir kinetics to the first- and second-order rate equations were put forward, which suggested that the relative magnitude of theta e over k 1/ k 2 governs the simplification of the Langmuir kinetics. In cases where k 1/ k 2 is greater than theta e or k 1/ k 2 is very close to theta e, adsorption kinetics would be reasonably described by the first-order rate equation, whereas the Langmuir kinetics would be reduced to the second-order equation only at k 1/ k 2 Langmuir kinetics indeed is determined by C 0. Detailed C 0-depedent boundary conditions for simplifying the Langmuir kinetics were also established and were verified by experimental data.

  2. Reproducibility of the cutoff probe for the measurement of electron density

    Energy Technology Data Exchange (ETDEWEB)

    Kim, D. W.; Oh, W. Y. [Department of Mechanical Engineering, Korea Advanced Institute of Science and Technology, Daejeon 305-701 (Korea, Republic of); You, S. J., E-mail: sjyou@cnu.ac.kr [Department of Physics, Chungnam National University, Daejeon 305-701 (Korea, Republic of); Kwon, J. H.; You, K. H.; Seo, B. H.; Kim, J. H., E-mail: jhkim86@kriss.re.kr [Center for Vacuum Technology, Korea Research Institute of Standards and Science, Daejeon 305-306 (Korea, Republic of); Yoon, J.-S. [Plasma Technology Research Center, National Fusion Research Institute, Gunsan 573-540 (Korea, Republic of)

    2016-06-15

    Since a plasma processing control based on plasma diagnostics attracted considerable attention in industry, the reproducibility of the diagnostics using in this application has become a great interest. Because the cutoff probe is one of the potential candidates for this application, knowing the reproducibility of the cutoff probe measurement becomes quit important in the cutoff probe application research. To test the reproducibility of the cutoff probe measurement, in this paper, a comparative study among the different cutoff probe measurements was performed. The comparative study revealed remarkable result: the cutoff probe has a great reproducibility for the electron density measurement, i.e., there are little differences among measurements by different probes made by different experimenters. The discussion including the reason for the result was addressed via this paper by using a basic measurement principle of cutoff probe and a comparative experiment with Langmuir probe.

  3. Miscibility and Molecular Orientation of Carbazole in Mixed Langmuir and Langrnuir-Blodgett Films

    Institute of Scientific and Technical Information of China (English)

    Md. N. Islam; D. Bhattacharjee; S. A. Hussain

    2007-01-01

    We report the miscibility and molecular orientation of carbazole (CA) molecules in the mixed Langmuir and Langmuir-Blodgett (LB) films of CA in polymethyl methacrylate (PMMA) and stearic acid (SA) matrices. The r-A isotherm confirms the formation of stable Langmuir films of CA mixed with either PMMA or SA at airwater interface. Characteristics of area per molecule versus molefraction and collapse pressure versus molefraction reveal complete demixing of CA and the matrix PMMA/SA molecules in the mixed films. Absorption spectroscopy certainly confirms the fact that CA molecules have preferred orientation on the substrate of the LB films.

  4. Dust charge fluctuation effects on Langmuir waves with kappa distributed electrons

    Science.gov (United States)

    Jamshidi, M.; Rouhani, M. R.; Hakimi Pajouh, H.

    2016-03-01

    Using a kinetic description, dust charge fluctuations due to the inelastic collisions between dust particles and plasma particles are studied in unmagnetized dusty plasmas. Most astrophysical and space plasmas are observed to have non-Maxwellian high energy tail. Therefore, a kappa distribution for electrons in the equilibrium is assumed. The dispersion relation and damping rates for Langmuir waves are obtained. Considering the dust charge fluctuations increases the damping rate of Langmuir waves. It is shown that the damping rate of Langmuir waves depends on the spectral index and the dust density parameter.

  5. Fabrication and structure of Langmuir-Blodgett films of ferroelectric liquid crystal

    Institute of Scientific and Technical Information of China (English)

    WEN Zi; JIANG Qing; T.Kenji; O.Yukihiro

    2005-01-01

    The molecular aggregation, orientation, and structure in Langmuir-Blodgett films of ferroelectric liquid crystal were studied by ultraviolet and Fourier transform infrared spectra. The results show that medium strong H-aggregates in the Langmuir-Blodgett films of ferroelectric liquid crystal are formed by chromophores where the alkyl chains are nearly perpendicular to the film surface. Compared with the cast films, the CO stretching bands, due to the rotational isomerism around the O-C axis of the chiral part, can be identified clearly in Langmuir-Blodgett films.

  6. Improving comparability between microarray probe signals by thermodynamic intensity correction

    DEFF Research Database (Denmark)

    Bruun, G. M.; Wernersson, Rasmus; Juncker, Agnieszka

    2007-01-01

    different probes. It is therefore of great interest to correct for the variation between probes. Much of this variation is sequence dependent. We demonstrate that a thermodynamic model for hybridization of either DNA or RNA to a DNA microarray, which takes the sequence-dependent probe affinities...

  7. Collective transport of weakly interacting molecular motors with Langmuir kinetics

    Science.gov (United States)

    Chandel, Sameep; Chaudhuri, Abhishek; Muhuri, Sudipto

    2015-04-01

    Filament-based intracellular transport involves the collective action of molecular motor proteins. Experimental evidences suggest that microtubule (MT) filament bound motor proteins such as kinesins weakly interact among themselves during transport and with the surrounding cellular environment. Motivated by these observations we study a driven lattice gas model for collective unidirectional transport of molecular motors on open filament. This model incorporates short-range next-nearest-neighbour (NNN) interactions between the motors and couples the transport process on filament with surrounding cellular environment through adsorption-desorption Langmuir kinetics (LK) of the motors. We analyse this model within the framework of a mean-field (MF) theory in the limit of weak interactions between the motors. We point to the mapping of this model with the non-conserved version of the Katz-Lebowitz-Spohn (KLS) model. The system exhibits rich phase behavior with a variety of inhomogeneous phases including localized shocks in the bulk of the filament. We obtain the steady-state density and current profiles, analyse their variation as a function of the strength of interaction and construct the non-equilibrium MF phase diagram. We compare these MF results with Monte Carlo simulations and find that the MF analysis shows reasonably good agreement with simulation results as long as the motors are weakly interacting. For sufficently strong NNN interaction between the motors, the mean-field results deviate significantly, and for very strong NNN interaction in the absence of LK, the current in the lattice is determined solely by the NNN interaction parameter and it becomes independent of entry and exit rates of motors at the filament boundaries.

  8. Improved Analysis Techniques for Cylindrical and Spherical Double Probes (Preprint)

    Science.gov (United States)

    2012-03-21

    accounts for the finite, but non -negligible extent of the plasma sheath. One of the most extensive assessments of ion collection by a biased cylindrical...Approved for public release; distribution unlimited. 4 regardless of rP/λD so long as the electron distribution function is Maxwellian such that...731. 3 J.G. Laframboise, Theory of Spherical and Cylindrical Langmuir Probes in a Collisionless, Maxwellian Plasma at Rest, (University of Toronto

  9. Fabricação e caracterização de filmes Langmuir e Langmuir-Blodgett de derivados do politiofeno

    OpenAIRE

    Nunes, Bruno Moser

    2012-01-01

    Os politiofenos apresentam algumas vantagens em relação aos demais polímeros conjugados como, por exemplo, a facilidade de síntese química e a relativa facilidade de funcionalização de suas cadeias laterais. A maioria dos derivados do politiofeno são insolúveis em água, o que torna possível o processamento desses na forma de filmes ultrafinos pelas técnicas de Langmuir-Blodgett (LB) ou de Langmuir-Schaefer, gerando filmes nanoestruturados e com espessura controlada. Dentro deste contexto, est...

  10. Understanding Peptide Oligomeric State in Langmuir Monolayers of Amphiphilic 3-Helix Bundle-Forming Peptide-PEG Conjugates

    Science.gov (United States)

    Shu, Jessica Y.; Xu, Ting

    2016-01-01

    Coiled-coil peptide–polymer conjugates are an emerging class of biomaterials. Fundamental understanding of the coiled-coil oligomeric state and assembly process of these hybrid building blocks is necessary to exert control over their assembly into well-defined structures. Here, we studied the effect of peptide structure and PEGylation on the self-assembly process and oligomeric state of a Langmuir monolayer of amphiphilic coiled-coil peptide–polymer conjugates using X-ray reflectivity (XR) and grazing-incidence X-ray diffraction (GIXD). Our results show that the oligomeric state of PEGylated amphiphiles based on 3-helix bundle-forming peptide is surface pressure dependent, a mixture of dimers and trimers was formed at intermediate surface pressure but transitions into trimers completely upon increasing surface pressure. Moreover, the interhelical distance within the coiled-coil bundle of 3-helix peptide-PEG conjugate amphiphiles was not perturbed under high surface pressure. Present studies provide valuable insights into the self-assembly process of hybrid peptide–polymer conjugates and guidance to develop biomaterials with controlled multivalency of ligand presentation. PMID:27784156

  11. The LC resonance probe for determining local plasma density

    Energy Technology Data Exchange (ETDEWEB)

    Boris, D R; Fernsler, R F; Walton, S G, E-mail: david.boris.ctr@nrl.navy.mi [Naval Research Laboratory, Charge Particle Physics Branch-Code 6752, Plasma Physics Division, 4555 Overlook Ave. SW, Washington, DC 20375 (United States)

    2011-04-15

    We present a novel plasma diagnostic for measuring local plasma density in reactive-gas plasmas, and depositing plasmas. The diagnostic uses a network analyzer to measure the LC resonance (LCR) frequency of a parallel plate capacitor with inductive leads. The location of the LCR ({omega}{sub R}) in frequency space is then used as a measure of the plasma dielectric constant bold varepsilon{sub p} between the plates. By properly constructing the LCR probe, {omega}{sub R} can be tuned such that {omega}{sub R} >> {omega}{sub ce}, where {omega}{sub ce} is the electron-cyclotron frequency. Thus, the probe can be used in plasmas with varying degrees of magnetization while avoiding complications introduced to bold varepsilon{sub p} when {omega} is comparable to {omega}{sub ce}. Density measurements from the LCR probe are compared with Langmuir probe measurements in an electron-beam generated plasma in which density varied from 10{sup 9} to 10{sup 11} cm{sup -3}. An axial magnetic field, typically used to confine the electron beam, was varied between 0 to 300 G. The LCR probe showed good agreement with a Langmuir probe across the entire range of magnetic fields.

  12. Mobile probes

    DEFF Research Database (Denmark)

    2016-01-01

    A project investigating the effectiveness of a collection of online resources for teachers' professional development used mobile probes as a data collection method. Teachers received questions and tasks on their mobile in a dialogic manner while in their everyday context as opposed to in an inter......A project investigating the effectiveness of a collection of online resources for teachers' professional development used mobile probes as a data collection method. Teachers received questions and tasks on their mobile in a dialogic manner while in their everyday context as opposed...... to in an interview. This method provided valuable insight into the contextual use, i.e. how did the online resource transfer to the work practice. However, the research team also found that mobile probes may provide the scaffolding necessary for individual and peer learning at a very local (intra-school) community...... level. This paper is an initial investigation of how the mobile probes process proved to engage teachers in their efforts to improve teaching. It also highlights some of the barriers emerging when applying mobile probes as a scaffold for learning....

  13. Langmuir Wave Electric Fields Induced by Electron Beams in the Heliosphere

    CERN Document Server

    Reid, Hamish A S

    2016-01-01

    Solar electron beams responsible for type III radio emission generate Langmuir waves as they propagate out from the Sun. The Langmuir waves are observed via in-situ electric field measurements. These Langmuir waves are not smoothly distributed but occur in discrete clumps, commonly attributed to the turbulent nature of the solar wind electron density. Exactly how the density turbulence modulates the Langmuir wave electric fields is understood only qualitatively. Using weak turbulence simulations, we investigate how solar wind density turbulence changes the probability distribution functions, mean value and variance of the beam-driven electric field distributions. Simulations show rather complicated forms of the distribution that are dependent upon how the electric fields are sampled. Generally the higher magnitude of density fluctuations reduce the mean and increase the variance of the distribution in a consistent manor to the predictions from resonance broadening by density fluctuations. We also demonstrate ...

  14. Excitation and diagnosis of cascading Langmuir waves in ionospheric plasmas at Gakona, Alaska

    Energy Technology Data Exchange (ETDEWEB)

    Burton, L M; Cohen, J A; Pradipta, R; Labno, A; Lee, M C; Batishchev, O; Rokusek, D L [Massachusetts Institute of Technology, Cambridge, MA 02139 (United States); Kuo, S P [Polytechnic University, Brooklyn, NY 11201 (United States); Watkins, B J; Oyama, S [University of Alaska Fairbanks, Fairbanks, AK 99775 (United States)], E-mail: mclee@mit.edu

    2008-12-15

    Ionospheric plasma heating experiments were conducted at Gakona, Alaska to investigate cascading spectra of Langmuir wave turbulence, excited by parametric instabilities diagnosed by Modular UHF Ionospheric Radar (MUIR). This work is aimed at testing the recent theory of Kuo and Lee (2005 J. Geophys. Res. 110 A01309) that addresses how the cascade of Langmuir waves can distribute spatially via the resonant and non-resonant decay processes. The non-resonant cascade proceeds at the location where parametric decay instability (PDI) or oscillating two-stream instability (OTSI) is excited and severely hampered by the frequency mismatch effect. By contrast, the resonant cascade, which takes place at lower matching heights, has to overcome the propagation loss of the Langmuir pump waves in each cascade step. Our experimental results have corroborated these predictions about the generation of cascading Langmuir waves by the HAARP heater.

  15. Long-range excitation energy transfer in Langmuir-Blodgett multilayer systems

    Science.gov (United States)

    Draxler, Sonja; Lippitsch, Max E.; Aussenegg, Franz R.

    1989-07-01

    In Langmuir-Blodgett films containing organic dyes, efficient energy transfer over distances exceeding 100 nm is observed. This exceptionally long-range transfer is interpreted as due to special mutual orientation of the dye molecules.

  16. Langmuir-Blodgett films of alkane chalcogenice (S, Se, Te) stabilized gold nanoparticles

    DEFF Research Database (Denmark)

    Brust, M.; Stuhr-Hansen, N.; Norgaard, K.

    2001-01-01

    Gold nanoparticles stabilized by alkanethiolates, alkaneselenides, and alkanetellurides have been prepared by analogous methods. Chloroform solutions of thiolate and selenide stabilized particles were spread and evaporated on the water/air interface where the particles formed well-defined Langmuir...

  17. Técnicas de caracterização para investigar interações no nível molecular em filmes de Langmuir e Langmuir-Blodgett (LB) Characterization techniques to investigate molecular-level interactions in Langmuir and Langmuir-Blodgett (LB) films

    OpenAIRE

    2005-01-01

    This paper discusses fundamental concepts for the characterization of Langmuir monolayers and Langmuir-Blodgett (LB) films, with emphasis on investigations of material properties at the molecular level. By way of illustration, results for phospholipid monolayers interacting with the drug dipyridamole are highlighted. These results were obtained with several techniques, including in situ grazing incidence X-ray diffraction, Fourier transform infrared (FTIR) spectroscopy, fluorescence microscop...

  18. Conductivity Probe

    Science.gov (United States)

    2008-01-01

    The Thermal and Electrical Conductivity Probe (TECP) for NASA's Phoenix Mars Lander took measurements in Martian soil and in the air. The needles on the end of the instrument were inserted into the Martian soil, allowing TECP to measure the propagation of both thermal and electrical energy. TECP also measured the humidity in the surrounding air. The needles on the probe are 15 millimeters (0.6 inch) long. The Phoenix Mission is led by the University of Arizona, Tucson, on behalf of NASA. Project management of the mission is by NASA's Jet Propulsion Laboratory, Pasadena, Calif. Spacecraft development is by Lockheed Martin Space Systems, Denver.

  19. Modeling Nonlinear Adsorption with a Single Chemical Parameter: Predicting Chemical Median Langmuir Binding Constants.

    Science.gov (United States)

    Davis, Craig Warren; Di Toro, Dominic M

    2015-07-07

    Procedures for accurately predicting linear partition coefficients onto various sorbents (e.g., organic carbon, soils, clay) are reliable and well established. However, similar procedures for the prediction of sorption parameters of nonlinear isotherm models are not. The purpose of this paper is to present a procedure for predicting nonlinear isotherm parameters, specifically the median Langmuir binding constants, K̃L, obtained utilizing the single-chemical parameter log-normal Langmuir isotherm developed in the accompanying work. A reduced poly parameter linear free energy relationship (pp-LFER) is able to predict median Langmuir binding constants for graphite, charcoal, and Darco granular activated carbon (GAC) adsorption data. For the larger F400 GAC data set, a single pp-LFER model was insufficient, as a plateau is observed for the median Langmuir binding constants of larger molecular volume sorbates. This volumetric cutoff occurs in proximity to the median pore diameter for F400 GAC. A log-linear relationship exists between the aqueous solubility of these large compounds and their median Langmuir binding constants. Using this relationship for the chemicals above the volumetric cutoff and the pp-LFER below the cutoff, the median Langmuir binding constants can be predicted with a root-mean square error for graphite (n = 13), charcoal (n = 11), Darco GAC (n = 14), and F400 GAC (n = 44) of 0.129, 0.307, 0.407, and 0.424, respectively.

  20. Langmuir and Langmuir-Blodgett films of amphiphilic hexa-peri-hexabenzocoronene: New phase transitions and electronic properties controlled by pressure

    DEFF Research Database (Denmark)

    Reitzel, N.; Hassenkam, T.; Balashev, K.;

    2001-01-01

    We present the synthesis as well as the structural and electronic properties of an amphiphilic derivative of hexaalkylhexa-peri-hexabenzocoronene (HBC), which contains one alkyl substituent that is terminated with a carboxylic acid group. The molecules form well-defined Langmuir films when spread...

  1. Plasma diagnostics by means of electric probes; Diagnostico del plasma por medio de sondas electricas

    Energy Technology Data Exchange (ETDEWEB)

    Colunga S, S

    1991-04-15

    In this work a summary of the classical theoretical models to interpret the characteristic curve of a Langmuir electric probe placed in a plasma without magnetic field and with the one is made. The methodology for the electron temperature calculation and the density of the plasma in both cases is given, starting from the characteristic curve of the probe, as well as the approaches for the correct application of this diagnostic method of the plasma. (Author)

  2. Pollution Probe.

    Science.gov (United States)

    Chant, Donald A.

    This book is written as a statement of concern about pollution by members of Pollution Probe, a citizens' anti-pollution group in Canada. Its purpose is to create public awareness and pressure for the eventual solution to pollution problems. The need for effective government policies to control the population explosion, conserve natural resources,…

  3. "Two-point" assembling of Zn(II) and Co(II) metalloporphyrins derivatized with a crown ether substituent in Langmuir and Langmuir-Blodgett films.

    Science.gov (United States)

    Noworyta, Krzysztof; Marczak, Renata; Tylenda, Rafal; Sobczak, Janusz W; Chitta, Raghu; Kutner, Wlodzimierz; D'Souza, Francis

    2007-02-27

    The effect of "two-point" interactions of Zn(II) and Co(II) metalloporphyrins, bearing 15-crown-5 ether peripheral substituents, on their assembling in Langmuir and Langmuir-Blodgett (LB) films was investigated. That is, simultaneously, the central metal ion of the porphyrin was axially ligated by a nitrogen-containing ligand in the emerged part of the Langmuir film on one hand, and a suitably selected cation pertaining in the subphase solution was supramolecularly complexed by the crown ether moiety in the submerged part of the film on the other. The compression and polarity properties of the Langmuir films of the derivatized free-base 5,10,15-triphenyl-20-(benzo-15-crown-5)porphyrin, H2(TPMCP), and the corresponding cobalt(II) and zinc(II) metalloporphyrins, denoted as Co(TPMCP) and Zn(TPCMP), respectively, as well as inclusion complexes of the metalloporphyrins with selected cations were investigated. For the axial ligation of Zn(II) and Co(II), pyrazine (pyz) and 4,4'-bipyridnine (bpy) aromatic as well as piperazine (ppz) and 1,4-diazabicyclo[2.2.2]octane (DABCO) cyclic heteroaliphatic ligands were selected. The films were formed on the water subphase solution in the absence and presence of LiCl, NaCl, or NH4Cl. The Langmuir films were built of monolayer J-type aggregates of tilted porphyrin macrocycles. The porphyrins formed rather labile complexes with the cations in the subphase. Nevertheless, the XPS analysis revealed that these cations were LB transferred together with the porphyrins onto solid substrates. In the Co(TPMCP) Langmuir films formed on the water subphases, Co(II) was complexed by aromatic but not cyclic heteroaliphatic ligands, while, in these films formed on the NaCl subphase solutions, the metalloporphyrin was also complexed by DABCO. In Langmuir films spread on alkaline subphase solutions, both aromatic and heteroaliphatic ligands formed complexes with Co(TPMCP) of different stoichiometries. The X-ray reflectivity and GIXD measurements

  4. Observation of a new turbulence-driven limit-cycle state in H-modes with lower hybrid current drive and lithium-wall conditioning in the EAST superconducting tokamak

    DEFF Research Database (Denmark)

    Wang, H.Q.; Xu, G.S.; Guo, H.Y.;

    2012-01-01

    -frequency oscillation, termed a limit-cycle state, appears at the edge during the quiescent phase with good energy and particle confinement. Detailed measurements by edge Langmuir probes show modulation interaction and strong three-wave coupling between the low-frequency oscillations and high-frequency-broadband (80......The first high confinement H-mode plasma has been obtained in the Experimental Advanced Superconducting Tokamak (EAST) with about 1 MW lower hybrid current drive after wall conditioning by lithium evaporation and real-time injection of Li powder. Following the L–H transition, a small-amplitude, low....... And the measurements demonstrate that the energy gain of zonal flows is of the same order as the energy loss of turbulence. This strongly suggests the interactions between zonal flows and high-frequency turbulences at the pedestal during the limit-cycle state....

  5. Hybridization thermodynamics of NimbleGen Microarrays

    Directory of Open Access Journals (Sweden)

    Posekany Alexandra

    2010-01-01

    Full Text Available Abstract Background While microarrays are the predominant method for gene expression profiling, probe signal variation is still an area of active research. Probe signal is sequence dependent and affected by probe-target binding strength and the competing formation of probe-probe dimers and secondary structures in probes and targets. Results We demonstrate the benefits of an improved model for microarray hybridization and assess the relative contributions of the probe-target binding strength and the different competing structures. Remarkably, specific and unspecific hybridization were apparently driven by different energetic contributions: For unspecific hybridization, the melting temperature Tm was the best predictor of signal variation. For specific hybridization, however, the effective interaction energy that fully considered competing structures was twice as powerful a predictor of probe signal variation. We show that this was largely due to the effects of secondary structures in the probe and target molecules. The predictive power of the strength of these intramolecular structures was already comparable to that of the melting temperature or the free energy of the probe-target duplex. Conclusions This analysis illustrates the importance of considering both the effects of probe-target binding strength and the different competing structures. For specific hybridization, the secondary structures of probe and target molecules turn out to be at least as important as the probe-target binding strength for an understanding of the observed microarray signal intensities. Besides their relevance for the design of new arrays, our results demonstrate the value of improving thermodynamic models for the read-out and interpretation of microarray signals.

  6. Detection of MDM2/CDK4 amplification in lipomatous soft tissue tumors from formalin-fixed, paraffin-embedded tissue: comparison of multiplex ligation-dependent probe amplification (MLPA) and fluorescence in situ hybridization (FISH).

    Science.gov (United States)

    Creytens, David; van Gorp, Joost; Ferdinande, Liesbeth; Speel, Ernst-Jan; Libbrecht, Louis

    2015-02-01

    In this study, the detection of MDM2 and CDK4 amplification was evaluated in lipomatous soft tissue tumors using multiplex ligation-dependent probe amplification (MLPA), a PCR-based technique, in comparison with fluorescence in situ hybridization (FISH). These 2 techniques were evaluated in a series of 77 formalin-fixed, paraffin-embedded lipomatous tumors (27 benign adipose tumors, 28 atypical lipomatous tumors/well-differentiated liposarcomas, 18 dedifferentiated liposarcomas, and 4 pleomorphic liposarcomas). Using MLPA, with a cut-off ratio of >2, 36/71 samples (22 atypical lipomatous tumors/well-differentiated liposarcomas, and 14 dedifferentiated liposarcomas) showed MDM2 and CDK4 amplification. Using FISH as gold standard, MLPA showed a sensitivity of 90% (36/40) and a specificity of 100% (31/31) in detecting amplification of MDM2 and CDK4 in lipomatous soft tissue tumors. In case of high-level amplification (MDM2-CDK4/CEP12 ratio >5), concordance was 100%. Four cases of atypical lipomatous tumor/well-differentiated liposarcoma (4/26, 15%) with a low MDM2 and CDK4 amplification level (MDM2-CDK4/CEP12 ratio ranging between 2 and 2.5) detected by FISH showed no amplification by MLPA, although gain of MDM2 and CDK4 (ratios ranging between 1.6 and 1.9) was seen with MLPA. No amplification was detected in benign lipomatous tumors and pleomorphic liposarcomas. Furthermore, there was a very high concordance between the ratios obtained by FISH and MLPA. In conclusion, MLPA proves to be an appropriate and straightforward technique for screening MDM2/CDK4 amplification in lipomatous tumors, especially when a correct cut-off value and reference samples are chosen, and could be considered a good alternative to FISH to determine MDM2 and CDK4 amplification in liposarcomas. Moreover, because MLPA, as a multiplex technique, allows simultaneous detection of multiple chromosomal changes of interest, it could be in the future a very reliable and fast molecular analysis on

  7. Chemically derived graphene sheets top assembled over multi-walled carbon nanotube thin film by Langmuir Blodgett method for improved dual field emission.

    Science.gov (United States)

    Roy, Rajarshi; Jha, Arunava; Chattopadhyay, Kalyan K

    2013-01-01

    Graphene and carbon nanotubes are very much known as effective field emitter materials. However field emission applications with hybrid carbon nanostructures have mostly remained elusive so far. Here we report, top assembly of very thin layer of reduced graphene oxide (RGO) by Langmuir Blodgett method over a multi-walled carbon nanotubes (MWCNTs) thin film/ITO substrate to investigate the dual field emission property of the hybrid structure. The non-functionalized type of attachment in between the hybrid carbon nanostructures mainly due to van der Waals force of attraction ensured easy fabrication procedure. Evidence of uniform distribution of web like networks of very thin transparent RGO sheets top assembled over densely packed MWCNTs thin film was found from the field emission scanning electron microscopy analysis. The base layer conductivity was enhanced due to the incorporation of MWCNTs bottom layer over ITO and the former also additionally facilitated as emitter site pockets in between RGO planes. Finally, the RGO top assembly resulted in achieving significant improvement in current density and turn-on field in tandem with MWCNTs bottom layer bed making this hybrid system a much feasible candidate for future field emission (FE) based device applications.

  8. Directly labeled fluorescent DNA probes for chromosome mapping

    Energy Technology Data Exchange (ETDEWEB)

    Marrone, B.L.; Deaven, L.L.; Chen, D.J.; Park, Min S.; MacInnes, M.A.; Salzman, G.C.; Yoshida, T.M.

    1995-12-31

    A new strategy is briefly described for employing nucleic acid probes that are directly labeled with fluorochromes in fluorescence in situ hybridization techniques. These probes will permit the detection, quantitation, and high-precision spatial analysis of multiple DNA sequences along a single chromosome using video-enhanced fluorescence microscopy and digital image processing and analysis. Potential advantages of direct labeled DNA probes for fluorescence in situ hybridization far surpass currently available, indirect DNA probe labeling techniques in ease of use, versatility, and increased signal- to-noise ratio.

  9. Human papillomavirus detection in cervical dysplasias or neoplasias and in condylomata acuminaata by in situ hybridization with biotinylated DNA probes Detecção de papilomavirus humano em displasias ou neoplasias cervicais e em condilomas acuminados por hibridização in situ com sondas de DNA biotiniladas

    OpenAIRE

    Eliane Machado Guimarães; Geraldo Brasileiro Filho; Sérgio Danilo Junho Pena

    1992-01-01

    Specimens from cervical dysplasias or carcinomas and genital condylomata acuminata were retrospectively analysed by in situ hybridization (ISH) with bioti-nylated DNA probes for human papillomavirus (HPV) types 6, 11, 16 and 18. In the control group no case was positive for HPV DNA. In mild/moderate dysplasias, 4 cases (14%) were positive for HPV 6 or 11 and 2 cases (7%), for HPV 16. In the severe dysplasia/in situ carcinoma group, 9 cases (31%) showed presence of DNA of HPV types 16 or 18. S...

  10. Effect of filament supports on emissive probe measurements

    Energy Technology Data Exchange (ETDEWEB)

    Wang, X.; Howes, C. T. [Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, Colorado 80309 (United States); NASA Lunar Science Institute: Colorado Center for Lunar Dust and Atmospheric Studies, Boulder, Colorado 80309 (United States); Horanyi, M. [Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, Colorado 80309 (United States); NASA Lunar Science Institute: Colorado Center for Lunar Dust and Atmospheric Studies, Boulder, Colorado 80309 (United States); Department of Physics, University of Colorado, Boulder, Colorado 80309 (United States); Robertson, S. [NASA Lunar Science Institute: Colorado Center for Lunar Dust and Atmospheric Studies, Boulder, Colorado 80309 (United States); Department of Physics, University of Colorado, Boulder, Colorado 80309 (United States)

    2013-01-15

    We have constructed an emissive probe with a thin tungsten filament spot-welded across two nickel wires insulated with ceramic paint. We show that the ceramic supports covering the nickel wires have a large effect on the potential measurements in low-density plasmas. It is found that the potential measured by the emissive probe is more negative than the potential derived from a Langmuir probe current-voltage (I-V) characteristic curve when the plasma density is so low that the emitting filament remains immersed in the sheaths of the ceramic supports. The length of the filament L needs to be larger than about 2 Debye lengths (L > 2{lambda}{sub De}) in order to avoid the influence of the ceramic supports and to achieve reliable plasma potential measurements using emissive probes.

  11. Phase Coupling Between Spectral Components of Collapsing Langmuir Solitons in Solar Type III Radio Bursts

    Science.gov (United States)

    Thejappa, G.; MacDowall, R. J.; Bergamo, M.

    2012-01-01

    We present the high time resolution observations of one of the Langmuir wave packets obtained in the source region of a solar type III radio burst. This wave packet satisfies the threshold condition of the supersonic modulational instability, as well as the criterion of a collapsing Langmuir soliton, i.e., the spatial scale derived from its peak intensity is less than that derived from its short time scale. The spectrum of t his wave packet contains an intense spectral peak at local electron plasma frequency, f(sub pe) and relatively weaker peaks at 2f(sub pe) and 3f(sub pe). We apply the wavelet based bispectral analysis technique on this wave packet and compute the bicoherence between its spectral components. It is found that the bicoherence exhibits two peaks at (approximately f(sub pe), approximately f(sub pe)) and (approximately f(sub pe) approximately 2f(sub pe)), which strongly suggest that the spectral peak at 2f(sub pe) probably corresponds to the second harmonic radio emission, generated as a result of the merging of antiparallel propagating Langmuir waves trapped in the collapsing Langmuir soliton, and, the spectral peak at 3f(sub pe) probably corresponds to the third harmonic radio emission, generated as a result of merging of a trapped Langmuir wave and a second harmonic electromagnetic wave.

  12. Evidence for Langmuir Envelope Solitons in Solar Type III Burst Source Regions

    Science.gov (United States)

    Thejappa, G.; Goldstein, M. L.; MacDowall, R. J.; Papadopoulos, K.; Stone, R. G.

    1998-01-01

    We present observational evidence for the generation of Langmuir envelope solitons in the source regions of solar type III radio bursts. The solitons appear to be formed by electron beams which excite either the modulational instability or oscillating two-stream instability (OTSI). Millisecond data from the Ulysses Unified Radio and Plasma Wave Experiment (URAP) show that Langmuir waves associated with type III bursts occur as broad intense peaks with time scales ranging from 15 to 90 milliseconds (6 - 27 km). These broad field structures have the properties expected of Langmuir envelope solitons, viz.: the normalized peak energy densities, W(sub L)/n(sub e)T(sub e) approximately 10(exp -5), are well above the modulational instability threshold; the spatial scales, L, which range from 1 - 5 Langmuir wavelengths, show a high degree of inverse correlation with (W(sub L)/n(sub e)T(sub e))(sup 1/2); and the observed widths of these broad peaks agree well with the predicted widths of envelope solitons. We show that the orientation of the Langmuir field structures is random with respect to the ambient magnetic field, indicating that they are probably isotropic structures that have evolved from initially pancake-like solitons. These observations suggest that strong turbulence processes, such as the modulational instability or the OTSI, stabilize the electron beams that produce type III bursts.

  13. Hybrid Baryons

    CERN Document Server

    Page, P R

    2003-01-01

    We review the status of hybrid baryons. The only known way to study hybrids rigorously is via excited adiabatic potentials. Hybrids can be modelled by both the bag and flux-tube models. The low-lying hybrid baryon is N 1/2^+ with a mass of 1.5-1.8 GeV. Hybrid baryons can be produced in the glue-rich processes of diffractive gamma N and pi N production, Psi decays and p pbar annihilation.

  14. On Floating Potential of Emissive Probes in a Partially-Magnetized Plasma

    Science.gov (United States)

    Raitses, Yevgeny; Kraus, Brian

    2016-10-01

    We compare measurements of plasma potential in a cross-field Penning discharge from two probes: swept biased Langmuir probe and floating emissive probe. The plasma potential was deduced from the first derivative of the Langmuir probe characteristic. In previous studies, the emissive and swept biased probes were placed at the channel exit of a Hall thruster (HT). Measurements showed that the emissive probe floats below the plasma potential, in agreement with conventional theories. However, recent measurements in the Penning discharge indicate a floating potential of a strongly-emitting hot probe above the plasma potential. In both probe applications, xenon plasmas have magnetized electrons and non-magnetized ions with similar plasma densities (1010 - 1011 cm-3) . Though their electron temperatures differ by an order of magnitude (Penning 5 eV, HT 50 eV), this difference cannot explain the difference in measurement values of the hot floating potential because both temperatures are much higher than the emitting wire. In this work, we investigate how the ion velocity and other plasma parameters affect this discrepancy between probe measurements of the plasma potential. This work was supported by DOE contract DE-AC02-09CH11466.

  15. Diffusion barrier characteristics of co monolayer prepared by Langmuir Blodgett technique

    Energy Technology Data Exchange (ETDEWEB)

    Sharma, Sumit, E-mail: sumitelsd2007@gmail.com [Electronic Science Department, Kurukshetra University, Kurukshetra, Haryana 136119 (India); Kumar, Mukesh, E-mail: kumarmukesh@gmail.com [Department of Electrical Engineering, College of Engineering at Wadi Aldawasir, Prince Sattam Bin Abdulaziz University, Wadi Aldawasir 11991 (Saudi Arabia); Rani, Sumita [Electronic Science Department, Kurukshetra University, Kurukshetra, Haryana 136119 (India); Kumar, Dinesh, E-mail: dineshelsd@gmail.com [Electronic Science Department, Kurukshetra University, Kurukshetra, Haryana 136119 (India)

    2016-04-30

    Graphical abstract: Thermal stability of structures (a) Cu/SiO{sub 2}/Si and (b) Cu/Co/SiO{sub 2}/Si, indicating that presence of thin cobalt layer improves the thermal stability of the structure up to 600 °C. - Highlights: • Monolayers of cobalt were deposited on SiO{sub 2}/Si substrates using LB technique. • Copper layers were deposited on this structures using thermal evaporation method. • Thermal stability was determined by annealing the structures at various temperatures. • The structure was found to be stable up to 650 °C. - Abstract: Monolayers of Co over SiO{sub 2}/Si substrate were deposited using Langmuir Blodgett (LB) technique. The diffusion barrier capability of Co layer was evaluated against copper diffusion. The structure of the deposited Co layer was analyzed using X-ray photoelectron spectroscopy (XPS), Energy Dispersive X-ray Spectroscopy (EDS) and Atomic force microscopy (AFM) techniques. Thermal stability of Cu/SiO{sub 2}/Si and Cu/Co/SiO{sub 2}/Si test structures was studied and compared using X-ray diffraction (XRD), scanning electron microscope (SEM) and four probe techniques. The samples were annealed at different temperatures starting from 200 °C up to 700 °C in vacuum for 30 min. XRD results indicated that combination of Co/SiO{sub 2} worked as diffusion barrier up to 550 °C whereas SiO{sub 2} alone could work as barrier only up to 300 °C. Sheet resistance of these samples was measured as a function of annealing temperature which also supports XRD results. C–V curves of these structures under the influence of Biased Thermal Stress (BTS) were analyzed. BTS was applied at 2.5 MV cm{sup −1} at 150 °C. Results showed that in the presence of Co barrier layer there was no shift in the C–V curve even after 90 min of BTS while in the absence of barrier there was a significant shift in the C–V curve even after 30 min of BTS. Further these test structures were examined for leakage current density (j{sub L}) at same BTS

  16. ROS1基因非重复序列双色荧光原位杂交探针建立及在非小细胞肺癌组织检测中的应用%Construction of a repeat-free dual color fluorescent in situ hybridization probe for ROS1 gene in non-small cell lung cancer diagnosis

    Institute of Scientific and Technical Information of China (English)

    程弘夏; 叶伦; 薛力泉

    2014-01-01

    目的 建立ROS1基因的非重复序列荧光原位杂交(FISH)探针,比较其与商品化普通探针在非小细胞肺癌检测方面的差异.方法 探针制备的过程中加入Human Cot-1 DNA,与基因组中的重复序列复性结合成双链,用双链特异性酶特异性的切除重复序列.用红色和绿色荧光素分别标记BAC克隆片段化的PCR产物,最终混合得到ROS1基因不含重复序列的双色探针.将制备的非重复序列FISH探针用于2009至2013年收集的经基因测序检测确定的53例ROS1基因重排的非小细胞肺癌标本,并与传统探针测定结果比较.结果 与商品化的重复序列探针比较,非重复序列FISH探针背景清晰,仅在目的区域存在明亮的荧光杂交信号,噪音明显低于商品化探针.两种探针间的杂交率差异有统计学意义(P<0.05);两组探针之间的准确率差异无统计学意义(P>0.05).结论 经比较显示,非重复序列的ROS1双色FISH探针在对非小细胞肺癌样本检测中明显改善探针的杂交效率和信噪比,有利于提高检测的准确度.%Objective To establish a repeat-free ROS1 gene fluorescence in situ hybridization (FISH) probe,and to compare its efficacy with those of commercial FISH probes in non-small cell lung cancer.Methods The probe was constructed by combining human Cot-1 DNA genome into double-stranded sequence,and then digested by duples specific nuclease to establish a repeat-free sequence.The final repeat-free ROS1 FISH probe was labeled by red and green fluoresceins.Results Compared with the commercialized probe,repeat-free FISH probe exhibited excellent efficiency and low signal to noise ratio (SNR) in samples.There was statistical significance in the difference between the hybridization rate of these two probes(P<0.05),but there was no difference between the accuracy rate (P>0.05).Conclusion The repeat-free ROS1 FISH probe significantly improves the probe hybridization efficiency and SNR in nonsmall

  17. Immbolization of uricase enzyme in Langmuir and Langmuir-Blodgett films of fatty acids: possible use as a uric acid sensor.

    Science.gov (United States)

    Zanon, Nathaly C M; Oliveira, Osvaldo N; Caseli, Luciano

    2012-05-01

    Preserving the enzyme structure in solid films is key for producing various bioelectronic devices, including biosensors, which has normally been performed with nanostructured films that allow for control of molecular architectures. In this paper, we investigate the adsorption of uricase onto Langmuir monolayers of stearic acid (SA), and their transfer to solid supports as Langmuir-Blodgett (LB) films. Structuring of the enzyme in β-sheets was preserved in the form of 1-layer LB film, which was corroborated with a higher catalytic activity than for other uricase-containing LB film architectures where the β-sheets structuring was not preserved. The optimized architecture was also used to detect uric acid within a range covering typical concentrations in the human blood. The approach presented here not only allows for an optimized catalytic activity toward uric acid but also permits one to explain why some film architectures exhibit a superior performance. Copyright © 2011 Elsevier Inc. All rights reserved.

  18. Gold nanoparticle self-assembly in two-component lipid Langmuir monolayers.

    Science.gov (United States)

    Mogilevsky, Alina; Jelinek, Raz

    2011-02-15

    Self-assembly processes are considered to be fundamental factors in supramolecular chemistry. Langmuir monolayers of surfactants or lipids have been shown to constitute effective 2D "templates" for self-assembled nanoparticles and colloids. Here we show that alkyl-coated gold nanoparticles (Au NPs) adopt distinct configurations when incorporated within Langmuir monolayers comprising two lipid components at different mole ratios. Thermodynamic and microscopy analyses reveal that the organization of the Au NP aggregates is governed by both lipid components. In particular, we show that the configurations of the NP assemblies were significantly affected by the extent of molecular interactions between the two lipid components within the monolayer and the monolayer phases formed by each individual lipid. This study demonstrates that multicomponent Langmuir monolayers significantly modulate the self-assembly properties of embedded Au NPs and that parameters such as the monolayer composition, surface pressure, and temperature significantly affect the 2D nanoparticle organization.

  19. Clumpy Langmuir waves in type III radio sources - Comparison of stochastic-growth theory with observations

    Science.gov (United States)

    Robinson, P. A.; Cairns, I. H.; Gurnett, D. A.

    1993-01-01

    Detailed comparisons are made between the Langmuir-wave properties predicted by the recently developed stochastic-growth theory of type III sources and those observed by the plasma wave experiment on ISEE 3, after correcting for the main instrumental and selection effects. Analysis of the observed field-strength distribution confirms the theoretically predicted form and implies that wave growth fluctuates both spatially and temporally in sign and magnitude, leading to an extremely clumpy distribution of fields. A cutoff in the field-strength distribution is seen at a few mV/m, corresponding to saturation via nonlinear effects. Analysis of the size distribution of Langmuir clumps yields results in accord with those obtained in earlier work and with the size distribution of ambient density fluctuations in the solar wind. This confirms that the inhomogeneities in the Langmuir growth rate are determined by the density fluctuations and that these fluctuations persist during type III events.

  20. Dynamics of Langmuir and ion-sound waves in type III solar radio sources

    Science.gov (United States)

    Robinson, P. A.; Willes, A. J.; Cairns, I. H.

    1993-01-01

    The study traces the evolution of Langmuir and ion-sound waves in type III sources, incorporating linear growth, linear damping, and nonlinear electrostatic decay. Improved estimates are obtained for the wavenumber range of growing waves and the nonlinear coupling coefficient for the decay process. It is shown that the conditions in the solar wind do not allow a steady state to be attained; instead, bursty linear and nonlinear interactions take place, consistent with the highly inhomogeneous and impulsive waves actually observed. Nonlinear growth is found to be rapid enough to saturate the growth of the parent Langmuir waves in the available interaction time. The competing processes of nonlinear wave collapse and quasi-linear relaxation are discussed, and it is concluded that neither is responsible for the saturation of Langmuir growth.

  1. Probing into Magnetic Field and Initial Period of Neutron Star

    Institute of Scientific and Technical Information of China (English)

    BAI Hua; PENG Qiu-He

    2004-01-01

    Using the hybrid model and the neutrino jet rocket model, we calculate the magnetic fields and the initial periods of 72 pulsars. We probe into the possible connection among magnetic field, initial period, and initial quantum number.

  2. Surface chemistry and spectroscopy of UG8 asphaltene Langmuir film, part 1.

    Science.gov (United States)

    Orbulescu, Jhony; Mullins, Oliver C; Leblanc, Roger M

    2010-10-05

    This research focuses on a systematic investigation of UG8 asphaltene Langmuir films at the air-water interface using toluene as the spreading solvent. From the surface pressure-area isotherms, it was concluded that small-sized aggregates are spread on the water surface and the compression of the film leads to formation of large aggregates. Our methods provide a stringent test and confirmation for the formation of corresponding asphaltene nanoaggregates that have recently been proposed for bulk solutions. These results were confirmed by compression-decompression isotherms, Brewster angle microscopy, and p-polarized infrared reflection-absorption spectroscopy. The transfer of a single layer using both the Langmuir-Schaefer and Langmuir-Blodgett deposition techniques shows different aggregate shapes depending on the technique used as imaged using atomic force microscopy. The films reveal the existence of nanoaggregates spread on the water surface that coexist with large aggregates formed during compression. For the nanoaggregate, the thickness of the Langmuir-Schaefer and Langmuir-Blodgett films determined by AFM is consistent with small aggregation numbers of nanoaggregates determined by Langmuir film compression. In addition to these findings, the spreading solvent, toluene, was found to be trapped within the aggregates as confirmed by in situ UV-vis spectroscopy at the air-water interface. This result was possible only after waiting a time period of 1 h to allow the complete evaporation of the spreading solvent. This is the only study that reveals the presence of the in situ toluene within the UG8 aggregates directly at the air-water interface.

  3. Nanoparticle self-assembly assisted by polymers: the role of shear stress in the nanoparticle arrangement of Langmuir and Langmuir-Blodgett films.

    Science.gov (United States)

    Martín-García, Beatriz; Velázquez, M Mercedes

    2014-01-21

    We propose to use the self-assembly ability of a block copolymer combined with compression-expansion cycles to obtain CdSe quantum dots (QDs) structures of different morphology. The methodology proposed consists in transferring onto mica mixed Langmuir monolayers of QDs and the polymer poly(styrene-co-maleic anhydride) partial 2-butoxyethyl ester cumene terminated, PS-MA-BEE, previously sheared by 50 compression-expansion cycles. Results indicate that the shear stress takes out nanoparticles at the air-water interface from metastable states and promotes a new equilibrium state of the Langmuir monolayer. This new state was transferred onto mica by the Langmuir-Blodgett (LB) methodology, and the morphology of the LB films was analyzed by atomic force microscopy and transmission electron microscopy measurements. Our results show that when the amplitude strain increases, the QDs domain size decreases and the QDs LB film arrangement becomes more ordered. The dynamics of the monolayer relaxation after cycling involves at least three time scales which are related to the damping of surface fluctuation, raft rearrangement, and component movements inside each raft. Brewster angle microscopy allowed visualizing in situ the raft rearrangement at the air-water interface.

  4. Microarray-based estimation of SNP allele-frequency in pooled DNA using the Langmuir kinetic model

    Directory of Open Access Journals (Sweden)

    Ye Bang-Ce

    2008-12-01

    Full Text Available Abstract Background High throughput genotyping of single nucleotide polymorphisms (SNPs for genome-wide association requires technologies for generating millions of genotypes with relative ease but also at a reasonable cost and with high accuracy. In this work, we have developed a theoretical approach to estimate allele frequency in pooled DNA samples, based on the physical principles of DNA immobilization and hybridization on solid surface using the Langmuir kinetic model and quantitative analysis of the allelic signals. Results This method can successfully distinguish allele frequencies differing by 0.01 in the actual pool of clinical samples, and detect alleles with a frequency as low as 2%. The accuracy of measuring known allele frequencies is very high, with the strength of correlation between measured and actual frequencies having an r2 = 0.9992. These results demonstrated that this method could allow the accurate estimation of absolute allele frequencies in pooled samples of DNA in a feasible and inexpensive way. Conclusion We conclude that this novel strategy for quantitative analysis of the ratio of SNP allelic sequences in DNA pools is an inexpensive and feasible alternative for detecting polymorphic differences in candidate gene association studies and genome-wide linkage disequilibrium scans.

  5. Resonance between heat-carrying electrons and Langmuir waves in inertial confinement fusion plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Rozmus, W. [Department of Physics, University of Alberta, Edmonton, Alberta T6G 2G7 (Canada); Chapman, T.; Berger, R. L. [Lawrence Livermore National Laboratory, Livermore, California 94551 (United States); Brantov, A.; Bychenkov, V. Yu. [P.N. Lebedev Physics Institute, Russian Academy of Sciences, Moscow 119991 Russia and Center for Fundamental and Applied Research, VNIIA, ROSATOM, 127055 Moscow (Russian Federation); Winjum, B. J. [Department of Electrical Engineering, UCLA, Los Angeles, California 90095 (United States); Brunner, S. [Association EURATOM-Confederation Suisse, EPFL, 1015 Lausanne (Switzerland); Tableman, A.; Tzoufras, M. [Department of Physics and Astronomy, UCLA, Los Angeles, California 90095 (United States); Glenzer, S. [LCLS, Stanford, California 94025 (United States)

    2016-01-15

    In ignition scale hot plasmas, temperature gradients and thermal transport modify electron distributions in a velocity range resonant with Langmuir waves typical of those produced by stimulated Raman scattering. We examine the resultant changes to the Landau damping experienced by these Langmuir waves and the levels of thermal plasma fluctuations. The form factor and Thomson scattering cross-section in such plasmas display unique characteristics of the background conditions. A theoretical model and high-order Vlasov-Fokker-Planck simulations are used in our analysis. An experiment to measure changes in thermal plasma fluctuation levels due to a thermal gradient is proposed.

  6. Langmuir-Blodgett monolayers of InP quantum dots with short chain ligands.

    Science.gov (United States)

    Lambert, K; Wittebrood, L; Moreels, I; Deresmes, D; Grandidier, B; Hens, Z

    2006-08-15

    We demonstrate the organization of nearly monodisperse colloidal InP quantum dots at the air/water interface in Langmuir monolayers. The organization of the particles is monitored in situ by surface pressure-surface area measurements and ex situ by AFM measurements on films transferred to mica by Langmuir-Blodgett deposition. The influence of different ligands on the quality of the monolayer formed has been studied. We show that densely packed monolayers with little holes can be formed using short chain ligands like pyridine and pentamethylene sulfide. The advantage of using short chain ligands for electron tunneling to or from the quantum dots is demonstrated using scanning tunneling spectroscopy.

  7. The Nonlinear Langmuir Waves in a Multi-ion-Component Plasma

    Institute of Scientific and Technical Information of China (English)

    CHEN Yin-Hua; LU Wei; WANG Wen-Hao

    2001-01-01

    We investigated the nonlinear Langmuir waves in a multi-ion-component low-temperature plasma. Beginning with the fluid theory of plasma, and taking fully nonlinear response of the low-frequency ion motion into account, we derived a set of equations governing the nonlinear coupling of the amplitude of the Langmuir wave and the Iow-frequency perturbation density. Using the Sagdeev potential method, we analyzed the characteristics of solitary wave. In the limit of small amplitude, the envelope soliton was found. Our investigation demonstrates that the properties of soliton in a multi-ion-component plasma are different from those of soliton in an electron-ion plasma.

  8. Langmuir-Blodgett film of phycobilisomes from blue-green alga Spirulina platensis.

    Science.gov (United States)

    Chen, Chao; Zhang, Yu-Zhong; Chen, Xiu-Lan; Zhou, Bai-Cheng; Gao, Hong-Jun

    2003-10-01

    The phycobilisomes were isolated from blue-green alga Spirulina platensis, and could form monolayer film at air/water interface. The monolayer film of phycobilisomes was transferred to newly cleaved mica, and coated with gold. Scanning tunneling microscope was used to investigate the structure of the Langmuir-Blodgett film of phycobilisomes. It was shown that phycobilisomes in the monolayer arrayed in rows with core attaching on the substrate surface and rods radiating towards the air phase, this phenomenon was similar to the arrangement of phycobilisomes on cytoplasmic surface of thylakoid membrane in vivo. The possible applications of the Langmuir-Blodgett film of phycobilisomes were also discussed.

  9. Dynamic of Langmuir and Ion-Sound Waves in Type 3 Solar Radio Sources

    Science.gov (United States)

    Robinson, P. A.; Willes, A. J.; Cairns, I. H.

    1993-01-01

    The evolution of Langmuir and ion-sound waves in type 3 sources is investigated, incorporating linear growth, linear damping, and nonlinear electrostatic decay. Improved estimates are obtained for the wavenumber range of growing waves and the nonlinear coupling coefficient for the decay process. The resulting prediction for the electrostatic decay threshold is consistent with the observed high-field cutoff in the Langmuir field distribution. It is shown that the conditions in the solar wind do not allow a steady state to be attained; rather, bursty linear and nonlinear interactions take place, consistent with the highly inhomogeneous and impulsive waves actually observed. Nonlinear growth is found to be fast enough to saturate the growth of the parent Langmuir waves in the available interaction time. The resulting levels of product Langmuir and ion-sound waves are estimated theoretically and shown to be consistent with in situ ISEE 3 observations of type 3 events at 1 AU. Nonlinear interactions slave the growth and decay of product sound waves to that of the product Langmuir waves. The resulting probability distribution of ion-sound field strengths is predicted to have a flat tail extending to a high-field cutoff. This prediction is consistent with statistics derived here from ISEE 3 observations. Agreement is also found between the frequencies of the observed waves and predictions for the product S waves. The competing processes of nonlinear wave collapse and quasilinear relaxation are discussed, and it is concluded that neither is responsible for the saturation of Langmuir growth. When wave and beam inhomogeneities are accounted for, arguments from quasi-linear relaxation yield an upper bound on the Langmuir fields that is too high to be relevant. Nor are the criteria for direct wave collapse of the beam-driven waves met, consistent with earlier simulation results that imply that this process is not responsible for saturation of the beam instability. Indeed, even

  10. Verification of multiplex ligation-dependent probe amplification probes in the absence of positive samples.

    Science.gov (United States)

    Wooderchak-Donahue, Whitney; Vaughn, Cecily; Chou, Lan-Szu; Lewis, Tracey; Sumner, Kelli; Procter, Melinda; Gedge, Friederike; Bayrak-Toydemir, Pinar; Lyon, Elaine; Pont-Kingdon, Genevieve

    2011-11-01

    Deletions and duplications of single or multiple exons in specific genes are associated with human diseases. Multiplex ligation-dependant probe amplification (MLPA), a technique recently introduced to clinical laboratories, can detect deletions or duplications at the exon level. MLPA kits have a high multiplexing capability containing mixtures of exon-specific probes that target the gene of interest and control probes that hybridize to other genomic areas before PCR amplification. To verify each probe set, known positive samples with a single-exon deletion or duplication and normal samples are ideally used. Often, positive samples do not exist for each exon and normal samples are not suited to verify the identity of each probe set. We designed a straightforward approach using mixes of exon-specific PCR products as template to unequivocally verify each probe set in MLPA kits. This method can be used to verify the identity of MLPA probes for exons when positive samples are unavailable. Exon-specific probes from 15 MLPA kits were shown to hybridize to the targeted exons of interest. In one kit, this method identified probes that also bind a pseudogene, making them unreliable for clinical analysis. Incorporating this methodology in the analytical validation process will help ensure that MLPA results are interpreted correctly.

  11. Investigation of Radio Frequency Discharges and Langmuir Probe Diagnostic Methods in a Fast Flowing Electronegative Background Gas

    Science.gov (United States)

    2007-12-01

    399-440 (1975). Billington, A. P. and P. Borell, “The low temperature quenching of singlet molecular oxygen ,” )( 12 gaO Δ J. Chem. Soc. Faraday ...Transfer from to Various )( 32 +ΣuAN Molecules,” Trans. Faraday Soc., 87 (6): 272-288 (1971). Zhao and D. W. Setser, “Energy transfer reaction of...Chernukho, A. Bogaerts, R. Gijbels, C. Leys , “Species-in-cell Mo : 123310- Chen, F nostic Techniques 123320 (2005). . F. Plasma Diag . New York

  12. A Langmuir film approach to elucidating interactions in lipid membranes: 1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine/cholesterol/metal cation systems.

    Science.gov (United States)

    Korchowiec, Beata; Paluch, Maria; Corvis, Yohann; Rogalska, Ewa

    2006-01-01

    The interactions between two membrane lipids, 1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine (DPPE) and cholesterol (CHOL), were studied in Langmuir films using surface pressure isotherms and Brewster angle microscopy. The DPPE/CHOL interactions were probed for chosen monolayer and subphase (Na(+), Ca(2+)) composition at 20, 25, and 30 degrees C. The results obtained show that DPPE and CHOL are miscible for the cholesterol mol fractions x(CHOL)=0.3-0.5. Cholesterol induces condensation of the DPPE monolayers. The most significant condensation of the DPPE/CHOL monolayers was observed in the presence of Ca(2+) ions in the subphase at x(CHOL)=0.4. The negative deviation of the molecular surface area (MMA) additivity from the ideal behavior together with negative values of excess free enthalpy of mixing in the monolayers were interpreted in terms of attractive interactions between lipid molecules.

  13. Phase behaviour in binary mixed Langmuir-Blodgett monolayers of triglycerides

    NARCIS (Netherlands)

    Zdravkova, A.N.; van der Eerden, J.P.J.M.

    2007-01-01

    Binary mixed monolayers of the triglycerides (TAGs)-tripalmitin (PPP), tristearin (SSS) and triarachidin (AAA) at the air–water interface are investigated with the Langmuir method. Langmuir–Blodgett (LB) layers obtained by deposition on mica are investigated by Atomic Force Microscopy. Combining

  14. Decay of Langmuir wave in dense plasmas and warm dense matter

    CERN Document Server

    Son, S; Moon, Sung Joon

    2010-01-01

    The decays of the Langmuir waves in dense plasmas are computed using the dielectric function theory widely used in the solid state physics. Four cases are considered: a classical plasma, a Maxwellian plasma, a degenerate quantum plasma, and a partially degenerate plasma. The result is considerably different from the conventional Landau damping theory.

  15. General properties of the radiation spectra from relativistic electrons moving in a Langmuir turbulence

    CERN Document Server

    Teraki, Yuto

    2014-01-01

    We examine the radiation spectra from relativistic electrons moving in a Langmuir turbulence expected to exist in high energy astrophysical objects by using numerical method. The spectral shape is characterized by the spatial scale {\\lambda}, field strength {\\sigma}, and frequency of the Langmuir waves, and in term of frequency they are represented by {\\omega}_0 = 2{\\pi}c/{\\lambda}, {\\omega}_st = e{\\sigma}/mc, and {\\omega}_p, respectively. We normalize {\\omega}_st and {\\omega}_p by {\\omega}_0 as \\a \\equiv {\\omega}_st/{\\omega}_0 and \\b \\equiv{\\omega}_p/{\\omega}_0, and examine the spectral shape in the a-b plane. An earlier study based on Diffusive Radiation in Langmuir turbulence (DRL) theory by Fleishman and Toptygin showed that the typical frequency is {\\gamma}^2{\\omega}_p and that the low frequency spectrum behaves as F_{\\omega} pronto {\\omega}^1 for b > 1 irrespective of a. Here, we adopt the first principle numerical approach to obtain the radiation spectra in more detail. We generate Langmuir turbulence ...

  16. Saturation of radiation-induced parametric instabilities by excitation of Langmuir turbulence

    Energy Technology Data Exchange (ETDEWEB)

    Dubois, D.F.; Rose, H.A. [Los Alamos National Lab., NM (United States); Russell, D. [Lodestar Research Inc., Boulder, CO (United States)

    1995-12-01

    Progress made in the last few years in the calculation of the saturation spectra of parametric instabilities which involve Langmuir daughter waves will be reviewed. These instabilities include the ion acoustic decay instability, the two plasmon decay instability (TPDI), and stimulated Raman scattering (SRS). In particular I will emphasize spectral signatures which can be directly compared with experiment. The calculations are based on reduced models of driven Laugmuir turbulence. Thomson scattering from hf-induced Langmuir turbulence in the unpreconditioned ionosphere has resulted in detailed agreement between theory and experiment at early times. Strong turbulence signatures dominate in this regime where the weak turbulence approximation fails completely. Recent experimental studies of the TPDI have measured the Fourier spectra of Langmuir waves as well as the angular and frequency, spectra of light emitted near 3/2 of the pump frequency again permitting some detailed comparisons with theory. The experiments on SRS are less detailed but by Thomson scattering the secondary decay of the daughter Langmuir wave has been observed. Scaling laws derived from a local model of SRS saturation are compared with full simulations and recent Nova experiments.

  17. NONLINEAR OPTICAL-PROPERTIES OF LANGMUIR-BLODGETT MONOLAYERS - LOCAL-FIELD EFFECTS

    NARCIS (Netherlands)

    CNOSSEN, G; DRABE, KE; WIERSMA, DA

    1992-01-01

    Detailed measurements of the macroscopic second-order optical nonlinearity chi(2) (2-omega,omega,omega) of Langmuir-Blodgett dye-doped monolayers are reported. The observed deviations from a linear behavior of chi-(2) with increasing surface density are shown to be due to local-field effects. In ord

  18. Nonlinear optical properties of Langmuir-Blodgett monolayers : Local-field effects

    NARCIS (Netherlands)

    Cnossen, Gerard; Drabe, Karel E.; Wiersma, Douwe A.

    1992-01-01

    Detailed measurements of the macroscopic second-order optical nonlinearity chi(2) (2-omega,omega,omega) of Langmuir-Blodgett dye-doped monolayers are reported. The observed deviations from a linear behavior of chi-(2) with increasing surface density are shown to be due to local-field effects. In ord

  19. Structure and Second Harmonic Generation of Langmuir-Blodgett Films of Two Chiral Amphiphilic Azo Dyes

    NARCIS (Netherlands)

    Schoondorp, Monique A.; Schouten, Arend Jan; Hulshof, Johannes; Feringa, Ben L.

    1993-01-01

    The properties and structure of Langmuir-Blodgett films of two new amphiphilic nonlinear optical dyes containing stereogenic (chiral) centers were studied. The dye molecule 4-[[4’-[(3R)-palmitoylpyrrolidin-1-yl]phenyl]azo]-3-nitrobenzoic acid (KZ16) forms homogeneous structures in the plane of the s

  20. Space-Time Co-Evolution of the Surface Wave and Langmuir Turbulence Fields

    Science.gov (United States)

    2015-09-30

    Langmuir Turbulence Fields J.A. Smith/R. Pinkel/A.J. Lucas Marine Physical Laboratory Scripps Institution of Oceanography University of California, San...fluorometer and turbulence sensors; and a floating, kilometer-long optical fiber temperature array that can make direct measurement of sea-surface

  1. Langmuir turbulence in the auroral ionosphere 2: Nonlinear theory and simulations

    Science.gov (United States)

    Newman, D. L.; Goldman, M. V.; Ergun, R. E.

    1994-01-01

    A theoretical interpretation of sounding rocket measurements of intense Langmuir wave fields (less than or equal to 500 mV/m) driven by a stream of 20 eV to 4 keV electrons in the lower auroral zone is developed. This interpretation is based on the ability of the 10 microseconds sampling rate of the wave detector to temporally resolve the structure of the Langmuir wave field envelope. A modified form of the Zakharov equations is used to numerically study beam-driven Langmuir turbulence in the presence of a moderate magnetic field (OMEGA (sub e) approximately equals Omega (sub pe). Strong Landau damping on observed nonthermal scattered electrons, which is treated in a companion paper (Newman et al., this issue), plays an important role by inhibiting backscatter cascade and the development of strong turbulence. A parameterized model of the linear electron stream-driven wave instability is introduced, which incorporates limited quasilinear plateau formation. A reasonable set of parameters is found that yields semiquantitative agreement between observed properties of the Langmuir fields and the results of Zakharov equation simulations, including the amplitude and characteristic frequency of the electric field envelope modulations.

  2. Capping-ligand effect on the stability of CdSe quantum dot Langmuir monolayers.

    Science.gov (United States)

    Radhakrishnan, Chander; Lo, Michael K F; Knobler, Charles M; Garcia-Garibay, Miguel A; Monbouquette, Harold G

    2011-03-15

    The stability of Langmuir monolayers of CdSe Qdots capped with dodecan-ethiol (DDT), with dithiocarbamates having one, two, or three long alkyl chains (DTC-1, DTC-2 and DTC-3) or with tri-n-octylphosphine oxide (TOPO), was investigated and linked to the transport of Qdots into the subphase via a dissolution and diffusion mechanism. Langmuir films of Qdots were created by depositing droplets of purified Qdots in chloroform at the air-water interface. While holding the Qdot films at 13 mN/m for 1 h in a Langmuir trough, the average monolayer areas decreased by roughly 9% for TOPO-capped Qdots, ∼15-18% for the three DTC-capped Qdot preparations, and ∼21% for DDT-capped Qdots. Using the model of Ter Minassian-Saraga, the relative stabilities of the Qdot films studied were related to differences in equilibrium partitioning into the subphase and to apparent Qdot diffusivities within the subphase. An analysis of the Qdot preparations by Fourier-transform infrared spectroscopy (FTIR) revealed that the aliphatic tails of capping ligands were assembled on Qdot surfaces with similar packing densities for all ligand chemistries. A combined analysis of the film-area contraction and FTIR data suggested that, for the chemistries examined in this study, both the capping-ligand headgroup and the aliphatic tail groups impact Qdot Langmuir film stability through their joint influence on nanoparticle wettability and the tendency to aggregate upon partitioning into the subphase.

  3. Synthesis of Novel Amphiphilic Azobenzenes and X-ray Scattering Studies of Their Langmuir Monolayers

    DEFF Research Database (Denmark)

    Sørensen, Thomas Just; Kjær, Kristian; Breiby, Dag Werner;

    2008-01-01

    . At the air-water interface, the amphiphilic azobenzenes form noncrystalline but stable Langmuir films that display an unusual reversible monolayer collapse close to 35 mN/m. The structures and phase transitions were studied by X-ray reflectivity (XR) and grazing-incidence X-ray diffraction, both utilizing...

  4. Optimal Design in and Hazards of Linearization of Langmuir's Nonlinear Model.

    Science.gov (United States)

    Harrison, Ferrin; Katti, S. K.

    Langmuir's model is studied for the situation where epsilon is independently and identically normally distributed. The "Y/x" versus "Y" plot had a 90% mid-range that did not contain the true curve in a vast portion of the range of "x". The "1/Y" versus "1/chi" plot had undefined expected values,…

  5. A statistical case against the use of the Langmuir model for describing P sorption data

    Science.gov (United States)

    Sorption of P to soils is often investigated through batch experiments where sorption models are fit to the resultant sorption curve by least-squares regression. One of the most commonly used sorption models is the Langmuir model, a model which was originally developed for the study of gas sorption ...

  6. When Langmuir is too simple: H-2 dissociation on Pd(111) at high coverage

    DEFF Research Database (Denmark)

    Lopez, Nuria; Lodziana, Zbigniew; Illas, F.

    2004-01-01

    Recent experiments of H-2 adsorption on Pd(111) [T. Mitsui et al., Nature (London) 422, 705 (2003)] have questioned the classical Langmuir picture of second order adsorption kinetics at high surface coverage requiring pairs of empty sites for the dissociative chemisorption. Experiments find that ...

  7. Formation of ring calcium oxalate patterns induced by domains in DPPC Langmuir-Blodgett films

    Institute of Scientific and Technical Information of China (English)

    Yi Ming Liu; Sui Ping Deng; Hui Zheng; Jian Ming Ouyang

    2007-01-01

    The ring patterns of calcium oxalate crystals were induced by domains in Langmuir-Blodgett (LB) films of dipalmitoylpho-sphatidylcholine (DPPC). The result was explained by the defects at the ring boundaries of liquid condensed (LC) and liquid expanded (LE) phases of LB film. These boundaries could provide less free energy and much more nucleating sites for COM crystals.

  8. Density convection near radiating ICRF antennas and its effect on the coupling of lower hybrid waves

    Energy Technology Data Exchange (ETDEWEB)

    Ekedahl, A.; Colas, L.; Beaumont, B.; Bibet, Ph.; Bremond, S.; Kazarian, F. [Association Euratom-CEA Cadarache, 13 - Saint-Paul-lez-Durance (France). Dept. de Recherches sur la Fusion Controlee; Mayoral, M.L.; Mailloux, J. [Euratom/UKAEA Fusion Association, Culham Science Centre, Abingdon, OX (United Kingdom); Noterdaeme, J.M. [Max-Planck-Institut fuer Plasmaphysik, Euratom Association, Garching (Germany)]|[Gent University, EESA Dept. (Belgium); Tuccillo, A.A. [Associazione Euratom-ENEA sulla Fusione, CR Frascati, Rome (Italy)

    2003-07-01

    Combined operation of lower hybrid (LH) and Ion Cyclotron Resonance Frequency (ICRF) waves can result in a degradation of the LH wave coupling, as observed both in the Tore-Supra and Jet tokamaks. The reflection coefficient on the part of the LH launcher magnetically connected to the powered ICRF antenna increases, suggesting a local decrease in the electron density in the connecting flux tubes. This has been confirmed by Langmuir probe measurements on the LH launchers in the latest Tore-Supra experiments. Moreover, recent experiments in Jet indicate that the LH coupling degradation depends on the ICRF power and its launched k{sub /} spectrum. The 2D density distribution around the Tore-Supra ICRF antennas has been modelled with the CELLS-code, balancing parallel losses with diffusive transport and sheath induced ExB convection, obtained from RF field mapping using the ICANT-code. The calculations are in qualitative agreement with the experimental observations, i.e. density depletion is obtained, localised mainly in the antenna shadow, and dependent on ICRF power and antenna spectrum. (authors)

  9. Isolation of human minisatellite loci detected by synthetic tandem repeat probes: direct comparison with cloned DNA fingerprinting probes.

    Science.gov (United States)

    Armour, J A; Vergnaud, G; Crosier, M; Jeffreys, A J

    1992-08-01

    As a direct comparison with cloned 'DNA fingerprinting' probes, we present the results of screening an ordered array Charomid library for hypervariable human loci using synthetic tandem repeat (STR) probes. By recording the coordinates of positive hybridization signals, the subset of clones within the library detected by each STR probe can be defined, and directly compared with the set of clones detected by naturally occurring (cloned) DNA fingerprinting probes. The STR probes vary in the efficiency of detection of polymorphic minisatellite loci; among the more efficient probes, there is a strong overlap with the sets of clones detected by the DNA fingerprinting probes. Four new polymorphic loci were detected by one or more of the STR probes but not by any of the naturally occurring repeats. Sequence comparisons with the probe(s) used to detect the locus suggest that a relatively poor match, for example 10 out of 14 bases in a limited region of each repeat, is sufficient for the positive detection of tandem repeats in a clone in this type of library screening by hybridization. These results not only provide a detailed evaluation of the usefulness of STR probes in the isolation of highly variable loci, but also suggest strategies for the use of these multi-locus probes in screening libraries for clones from hypervariable loci.

  10. Beat-type Langmuir wave emissions associated with a type III solar radio burst: Evidence of parametric decay

    Science.gov (United States)

    Hospodarsky, G. B.; Gurnett, D. A.

    1995-01-01

    Recent measurements from the plasma wave instrument on the Galileo spacecraft have shown that Langmuir waves observed in conjunction with a type III solar radio burst contain many beat-type waveforms, with beat frequencies ranging from about 150 to 650 Hz. Strong evidence exists that the beat pattern is produced by two closely spaced narrowband components. The most likely candidates for these two waves are a beam-generated Langmuir wave and an oppositely propagating Langmuir wave produced by parametric decay. In the parametric decay process, nonlinear interactions cause the beam-driven Langmuir wave to decay into a Langmuir wave and a low-frequency ion sound wave. Comparisons of the observed beat frequency are in good agreement with theoretical predictions for a three-wave parametric decay process. Weak low-frequency emissions are also sometimes observed at the predicted frequency of the ion sound wave.

  11. Hybrid vehicles

    Energy Technology Data Exchange (ETDEWEB)

    West, J.G.W. [Electrical Machines (United Kingdom)

    1997-07-01

    The reasons for adopting hybrid vehicles result mainly from the lack of adequate range from electric vehicles at an acceptable cost. Hybrids can offer significant improvements in emissions and fuel economy. Series and parallel hybrids are compared. A combination of series and parallel operation would be the ideal. This can be obtained using a planetary gearbox as a power split device allowing a small generator to transfer power to the propulsion motor giving the effect of a CVT. It allows the engine to run at semi-constant speed giving better fuel economy and reduced emissions. Hybrid car developments are described that show the wide range of possible hybrid systems. (author)

  12. In Situ Detection of Strong Langmuir Turbulence Processes in Solar Type III Radio Bursts

    Science.gov (United States)

    Golla, Thejappa; Macdowall, Robert J.; Bergamo, M.

    2012-01-01

    The high time resolution observations obtained by the WAVES experiment of the STEREO spacecraft in solar type III radio bursts show that Langmuir waves often occur as intense localized wave packets. These wave packets are characterized by short durations of only a few ms and peak intensities, which well exceed the supersonic modulational instability (MI) thresholds. These timescales and peak intensities satisfy the criterion of the solitons collapsed to spatial scales of a few hundred Debye lengths. The spectra of these wave packets consist of primary spectral peaks corresponding to beam-resonant Langmuir waves, two or more sidebands corresponding to down-shifted and up-shifted daughter Langmuir waves, and low frequency enhancements below a few hundred Hz corresponding to daughter ion sound waves. The frequencies and wave numbers of these spectral components satisfy the resonance conditions of the modulational instability (MI). Moreover, the tricoherences, computed using trispectral analysis techniques show that these spectral components are coupled to each other with a high degree of coherency as expected of the MI type of four wave interactions. The high intensities, short scale lengths, sideband spectral structures and low frequency spectral enhancements and, high levels of tricoherences amongst the spectral components of these wave packets provide unambiguous evidence for the supersonic MI and related strong turbulence processes in type III radio bursts. The implication of these observations include: (1) the MI and related strong turbulence processes often occur in type III source regions, (2) the strong turbulence processes probably play very important roles in beam stabilization as well as conversion of Langmuir waves into escaping radiation at the fundamental and second harmonic of the electron plasma frequency, fpe, and (3) the Langmuir collapse probably follows the route of MI in type III radio bursts.

  13. Movable multi-probes for plasma boundary measurement in sino-united spherical tokamak

    Energy Technology Data Exchange (ETDEWEB)

    Chai, Song, E-mail: chso-1119@126.com; Wang, Wenhao; Tan, Yi; Gao, Zhe [Department of Engineering Physics, Tsinghua University, Beijing 100084 (China)

    2014-11-15

    A novel movable multi-probes is developed to get local magnetic and electrostatic profiles on Sino-UNIted Spherical Tokamak (SUNIST). This multi-probes combines a four-tips Langmuir probe, a magnetic coil, and a retarding field energy analyzer (RFEA). It can be used to simultaneously measure the poloidal magnetic field B{sub p}, electric field E{sub r}, electron temperature T{sub e}, electron density n{sub e}, and ion temperature T{sub i}. Its small overall size (20 × 20 × 38 mm{sup 3}) enables the movable multi-probes to measure the magnetic and electrostatic profiles in high spatial resolution, with negligible impact to plasma in SUNIST. This paper presents the design of the movable multi-probes, in particular, details of RFEA for reliable ion energy measurements. Preliminary experimental results of the movable multi-probes are given as well.

  14. Synthesis of circular double-stranded DNA having single-stranded recognition sequence as molecular-physical probe for nucleic acid hybridization detection based on atomic force microscopy imaging.

    Science.gov (United States)

    Nakano, Koji; Matsunaga, Hideshi; Murata, Masaharu; Soh, Nobuaki; Imato, Toshihiko

    2009-08-01

    A new class of DNA probes having a mechanically detectable tag is reported. The DNA probe, which consists of a single-stranded recognition sequence and a double-stranded circular DNA entity, was prepared by polymerase reaction. M13mp18 single strand and a 32mer oligodeoxynucleotide whose 5'-end is decorated with the recognition sequence were used in combination as template and primer, respectively. We have successfully demonstrated that the DNA probe is useful for bioanalytical purposes: by deliberately attaching target DNA molecules onto Au(111) substrates and by mechanically reading out the tag-entity using a high-resolution microscopy including atomic force microscopy, visualization/detection of the individual target/probe DNA conjugate was possible simply yet straightforwardly. The present DNA probe can be characterized as a 100%-nucleic acid product material. It is simply available by one-pod synthesis. A surface topology parameter, image roughness, has witnessed its importance as a quantitative analysis index with particular usability in the present visualization/detection method.

  15. New effects in Langmuir and Langmuir-Blodgett monolayers from fluorescently labelled phospholipids and their possible use for water quality control

    Science.gov (United States)

    Ivanov, G. R.; Geshev, N. I.

    2016-02-01

    Secondary water contamination poses significant challenges to the sensitivity and selectivity of sensors used for its detection and monitoring. Currently only lab tests can detect these contaminants and by the time this happens the contaminated water has entered the city water supply system. Fluorescent chromophore NitroBenzoxaDiazole (NBD) is very suitable and had been successfully used in biosensor applications due to its high sensitivity to close proximity polarity of the medium. Over the years we have discovered 3 new effects in NBD- labelled phospholipids which can significantly improve the performance of biosensors. The phospholipid matrix provides flexible biocompatible environment for immobilization of selectively reacting enzymes, microorganisms, DNA, immunoagents, whole cells. Use of single layer (3.1 nm thickness) films at the air-water interface (Langmuir films) or deposited on solid support as Langmuir-Blodgett (LB) film gives fast response times for real time monitoring (no slow diffusion processes) and precise molecule ordering and orientation. The first new effect was fluorescence self-quenching in Langmuir and LB films. In the liquid phase films exhibit normal fluorescence. Upon transition to solid phase fluorescence intensity is almost completely self-quenched and fluorescence lifetimes in the nanosecond region decrease 2 times. This is easily measured. Usually large heavy metal atoms quench fluorescence. We observed the opposite new effect when LB film is deposited in the solid phase from a subphase containing heavy metals. The third new effect is the obtaining of nanosized cylinders with bilayer thickness, which remain stable at least for months, when LB monolayer is deposited in the phase coexistence region at thermodynamic equilibrium. This greatly increases reacting surface and sensitivity of possible sensors. Almost all possible optical experimental methods were used for this research. This includes polarized ATR FTIR and polarized UV

  16. Langmuir monolayer and Langmuir-Blodgett films formed by a melamine-headed azobenzene-derived amphiphile: interfacial assembly affected by host-guest interaction.

    Science.gov (United States)

    Xu, Weihong; Wang, Yanhua; Xiao, Yunxia; Liu, Fang; Lu, Guo-Yuan

    2009-04-09

    A novel azobenzene-derived amphiphile with a melamine head, 2Azo-2C12H2-melamine, has been synthesized. pi-A isotherm measurements displayed that this amphiphile is able to form a stable Langmuir monolayer on both pure water and barbituric acid (BA)- or thymine (T)-containing subphases. The collapse surface pressure and limiting molecular area of its Langmuir monolayer on pure water are 40 mN/m and 0.56 nm2, respectively. However, when barbituric acid or thymine was introduced into the subphase, the corresponding pi-A isotherms of the monolayers exhibited a lower collapse surface pressure (22 mN/m for BA, 21 mN/m for T) and smaller limiting molecular area (0.54 nm2 for BA and 0.52 nm2 for T). UV-vis and FT-IR studies of the LB films formed by 2Azo-2C12H25-melamine have also been carried out. The results indicated that the LB films of 2Azo-2C12H25-melamine deposited from pure water undergo distinct collapse of the H-aggregate upon UV irradiation, while the LB films deposited from a BA- or T-containing subphase retain the H-aggregate. The host-guest-interaction-induced blockage of azobenzene photoisomerization should be responsible for the stabilized H-aggregate. A 1:1 host/guest binding mode to form a linear supramolecular polymeric chain has been proposed in the Langmuir monolayers formed on a BA- or T-containing subphase. The current results suggest that the host-guest interaction should be an effective means to manipulate the interfacial assembly of azobenzene-derived amphiphiles.

  17. Electrical potential-assisted DNA hybridization. How to mitigate electrostatics for surface DNA hybridization.

    Science.gov (United States)

    Tymoczko, Jakub; Schuhmann, Wolfgang; Gebala, Magdalena

    2014-12-24

    Surface-confined DNA hybridization reactions are sensitive to the number and identity of DNA capture probes and experimental conditions such as the nature and the ionic strength of the electrolyte solution. When the surface probe density is high or the concentration of bulk ions is much lower than the concentration of ions within the DNA layer, hybridization is significantly slowed down or does not proceed at all. However, high-density DNA monolayers are attractive for designing high-sensitivity DNA sensors. Thus, circumventing sluggish DNA hybridization on such interfaces allows a high surface concentration of target DNA and improved signal/noise ratio. We present potential-assisted hybridization as a strategy in which an external voltage is applied to the ssDNA-modified interface during the hybridization process. Results show that a significant enhancement of hybridization can be achieved using this approach.

  18. Electroactive functional hybrid layered nanocomposites

    Energy Technology Data Exchange (ETDEWEB)

    Destri, Giovanni Li; Torrisi, Vanna; Marletta, Giovanni [Laboratory for Molecular Surfaces and Nanotechnology (LAMSUN) - University of Catania and CSGI - Catania (Italy)

    2012-07-11

    Two methodologies to build new nanostructured hybrid layered nanocomposites are presented. The first one involves the preparation of hybrid metal/polymer nanolayers (NLs) by combining two monolayer preparation techniques: Horizontal Precipitation Langmuir Blodgett method (HP-ML), for copolymer monolayers and sputter deposition technique, for Au NLs deposition. The second methodology is aimed to prepare regular arrays of nanopores, with diameter ranging between 40-100 nm, in ultra-thin films of electroactive polymers, to obtain embedded regular arrays of nanopores filled by a further electroactive organic component. The produced hybrid MLs have been characterized by means of X-ray Photoelectron Spectroscopy (XPS), Atomic Force Microscopy (AFM) and Grazing Incidence X-ray Diffraction (GI-XRD). In the first case, current-voltage (I-V) measurements demonstrate that the multilayers exhibit a bipolar conduction behaviour (electrons and holes carriers), with a peculiar transition in the nature of the majority carriers (from holes to electrons) above a threshold number of bilayers. In the second case, it is found that the degree of pore filling, as well as the polymer crystallinity can be easily modulated, prompting the tuning of the photoresponse of the nanocomposites.

  19. MagiProbe: a novel fluorescence quenching-based oligonucleotide probe carrying a fluorophore and an intercalator

    OpenAIRE

    Yamane, Akio

    2002-01-01

    Fluorescence is the favored signaling technology for molecular diagnoses. Fluorescence energy transfer-based methods are powerful homogeneous assay tools. A novel oligonucleotide probe, named MagiProbe, which is simple to use, is described, and information given about the duplex formed with a target. The probe internally has a fluorophore and an intercalator. Its fluorescence is quenched by the intercalator in the absence of a target sequence. On hybridization with a target sequence, the prob...

  20. Optimization of the BLASTN substitution matrix for prediction of non-specific DNA microarray hybridization

    DEFF Research Database (Denmark)

    Eklund, Aron Charles; Friis, Pia; Wernersson, Rasmus;

    2010-01-01

    DNA microarray measurements are susceptible to error caused by non-specific hybridization between a probe and a target (cross-hybridization), or between two targets (bulk-hybridization). Search algorithms such as BLASTN can quickly identify potentially hybridizing sequences. We set out to improve...

  1. A novel fluorescent in situ hybridization technique for detection of Rickettsia spp. in archival samples

    DEFF Research Database (Denmark)

    Svendsen, Claus Bo; Boye, Mette; Struve, Carsten

    2009-01-01

    A novel, sensitive and specific method for detecting Rickettsia spp. in archival samples is described. The method involves the use of fluorescently marked oligonucleotide probes for in situ hybridization. Specific hybridization of Ricekttsia was found without problems of cross-reactions with bact......A novel, sensitive and specific method for detecting Rickettsia spp. in archival samples is described. The method involves the use of fluorescently marked oligonucleotide probes for in situ hybridization. Specific hybridization of Ricekttsia was found without problems of cross...

  2. Proximal Probes Facility

    Data.gov (United States)

    Federal Laboratory Consortium — The Proximal Probes Facility consists of laboratories for microscopy, spectroscopy, and probing of nanostructured materials and their functional properties. At the...

  3. Statistical behavior of foreshock Langmuir waves observed by the Cluster wideband data plasma wave receiver

    Directory of Open Access Journals (Sweden)

    K. Sigsbee

    2004-07-01

    Full Text Available We present the statistics of Langmuir wave amplitudes in the Earth's foreshock using Cluster Wideband Data (WBD Plasma Wave Receiver electric field waveforms from spacecraft 2, 3 and 4 on 26 March 2002. The largest amplitude Langmuir waves were observed by Cluster near the boundary between the foreshock and solar wind, in agreement with earlier studies. The characteristics of the waves were similar for all three spacecraft, suggesting that variations in foreshock structure must occur on scales greater than the 50-100km spacecraft separations. The electric field amplitude probability distributions constructed using waveforms from the Cluster WBD Plasma Wave Receiver generally followed the log-normal statistics predicted by stochastic growth theory for the event studied. Comparison with WBD receiver data from 17 February 2002, when spacecraft 4 was set in a special manual gain mode, suggests non-optimal auto-ranging of the instrument may have had some influence on the statistics.

  4. Determining the wavelength of Langmuir wave packets at the Earth's bow shock

    CERN Document Server

    Krasnoselskikh, V V; Bale, S D; 10.5194/angeo-29-613-2011

    2011-01-01

    The propagation of Langmuir waves in plasmas is known to be sensitive to density fluctuations. Such fluctuations may lead to the coexistence of wave pairs that have almost opposite wave-numbers in the vicinity of their reflection points. Using high frequency electric field measurements from the WIND satellite, we determine for the first time the wavelength of intense Langmuir wave packets that are generated upstream of the Earth's electron foreshock by energetic electron beams. Surprisingly, the wavelength is found to be 2 to 3 times larger than the value expected from standard theory. These values are consistent with the presence of strong inhomogeneities in the solar wind plasma rather than with the effect of weak beam instabilities.

  5. Chiral hierarchical self-assembly in Langmuir monolayers of diacetylenic lipids

    KAUST Repository

    Basnet, Prem B.

    2013-01-01

    When compressed in the intermediate temperature range below the chain-melting transition yet in the low-pressure liquid phase, Langmuir monolayers made of chiral lipid molecules form hierarchical structures. Using Brewster angle microscopy to reveal this structure, we found that as the liquid monolayer is compressed, an optically anisotropic condensed phase nucleates in the form of long, thin claws. These claws pack closely to form stripes. This appears to be a new mechanism for forming stripes in Langmuir monolayers. In the lower temperature range, these stripes arrange into spirals within overall circular domains, while near the chain-melting transition, the stripes arrange into target patterns. We attributed this transition to a change in boundary conditions at the core of the largest-scale circular domains. © 2013 The Royal Society of Chemistry.

  6. Modulational instability of a Langmuir wave in plasmas with energetic tails of superthermal electrons

    Energy Technology Data Exchange (ETDEWEB)

    Timofeev, I. V. [Budker Institute of Nuclear Physics SB RAS, 630090 Novosibirsk, Russia and Novosibirsk State University, 630090 Novosibirsk (Russian Federation)

    2013-01-15

    The impact of superthermal electrons on dispersion properties of isotropic plasmas and on the modulational instability of a monochromatic Langmuir wave is studied for the case when the power-law tail of the electron distribution function extends to relativistic velocities and contains most of the plasma kinetic energy. Such an energetic tail of electrons is shown to increase the thermal correction to the Langmuir wave frequency, which is equivalent to the increase of the effective electron temperature in the fluid approach, and has almost no impact on the dispersion of ion-acoustic waves, in which the role of temperature is played by the thermal spread of low-energy core electrons. It is also found that the spectrum of modulational instability in the non-maxwellian plasma narrows significantly, as compared to the equilibrium case, without change of the maximum growth rate and the corresponding wavenumber.

  7. Modulational instability of a Langmuir wave in plasmas with energetic tails of superthermal electrons

    CERN Document Server

    Timofeev, I V

    2012-01-01

    The impact of superthermal electrons on dispersion properties of isotropic plasmas and on the modulational instability of a monochromatic Langmuir wave is studied for the case when the power-law tail of the electron distribution function extends to relativistic velocities and contains most of the plasma kinetic energy. Such an energetic tail of electrons is shown to increase the thermal correction to the Langmuir wave frequency, which is equivalent to the increase of the effective electron temperature in the fluid approach, and has almost no impact on the dispersion of ion-acoustic waves, in which the role of temperature is played by the thermal spread of low-energy core electrons. It is also found that the spectrum of modulational instability in the non-maxwellian plasma narrows significantly, as compared to the equilibrium case, without change of the maximum growth rate and the corresponding wavenumber.

  8. Van't Hoff law for temperature dependent Langmuir constants in clathrate hydrate nanocavities

    CERN Document Server

    Lakhlifi, Azzedine

    2015-01-01

    This work gives a van't Hoff law expression of Langmuir constants of different species for determining their occupancy in the nanocavities of clathrate hydrates. The van't Hoff law's parameters are derived from a fit with Langmuir constants calculated using a pairwise site-site interaction potential to model the anisotropic potential environment in the cavities, as a function of temperature. The parameters can be used for calculating clathrates compositions. Results are given for nineteen gas species trapped in the small and large cavities of structure types I and II [1]. The accuracy of this approach is based on a comparison with available experimental data for ethane and cyclo- propane clathrate hydrates. The numerical method applied in this work, was recently validated from a comparison with the spherical cell method based on analytical considerations [1

  9. Effects of long-wavelength dissipation on beam-driven Langmuir turbulence

    Science.gov (United States)

    Robinson, P. A.; Newman, D. L.; Rubenchik, A. M.

    1992-01-01

    The effects of long-wavelength dissipation on beam-driven Langmuir turbulence are investigated using numerical simulations that include both weak and strong turbulence effects. Strong-turbulence wave collapses occur concurrently with weak-turbulence energy cascades if the long-wavelength damping is sufficiently small relative to the growth rate of the beam-unstable waves. Above a threshold damping level, only the weak-turbulence backscatter cascade is observed, and it becomes increasingly truncated as the damping increases, eventually consisting of only a single backscatter. A simple Lotka-Volterra model gives an excellent description of the periodic evolution observed in the weak-turbulence regime. Suppression of the usual backscatter cascade by long-wavelength damping enables intense beam-aligned density troughs to form, which trap and duct Langmuir waves.

  10. Electron beams and Langmuir turbulence in solar type III radio bursts observed in the interplanetary medium

    Science.gov (United States)

    Lin, R. P.

    1990-01-01

    Results are presented of in situ observations of electron beams, plasma waves, and associated solar type II radio emission in the interplanetary medium near 1 AU, which were provided by the ISEE-3 spacecraft. It is shown that electron beams are formed by the faster electrons arriving before the slower ones, following an impulsive injection at the sun. The resulting bump-on-tail in the reduced 1D distribution function is unstable to the growth of electrostatic electron plasma (Langmuir) waves. The Langmuir waves are observed to be highly impulsive in nature. The onset and temporal variations of the observed plasma waves are in good qualitative agreement with the wave growth expected from the evolution of the measured 1D distribution function. The lack of obvious plateauing of the bump-on-tail suggests that the waves were removed from resonance with the beam electrons by some wave-wave interaction.

  11. Statistical analysis of nonlinear wave interactions in simulated Langmuir turbulence data

    Directory of Open Access Journals (Sweden)

    J. Soucek

    Full Text Available We present a statistical analysis of strong turbulence of Langmuir and ion-sound waves resulting from beam-plasma interaction. The analysis is carried out on data sets produced by a numerical simulation of one-dimensional Zakharov’s equations. The nonlinear wave interactions are studied using two different approaches: high-order spectra and Volterra models. These methods were applied to identify two and three wave processes in the data, and the Volterra model was furthermore employed to evaluate the direction and magnitude of energy transfer between the wave modes in the case of Langmuir wave decay. We demonstrate that these methods allow one to determine the relative importance of strongly and weakly turbulent processes. The statistical validity of the results was thoroughly tested using surrogated data set analysis.

    Key words. Space plasma physics (wave-wave interactions; experimental and mathematical techniques; nonlinear phenomena

  12. Preparation of hierarchically aligned carbon nanotube films using the Langmuir-Blodgett technique.

    Science.gov (United States)

    Lee, Jae-Hyeok; Kang, Won-Seok; Nam, Gwang-Hyeon; Choi, Sung-Wook; Kim, Jae-Ho

    2009-12-01

    Hierarchically-aligned single-walled carbon nanotube (SWNT) films over large areas were fabricated by using Langmuir-Blodgett (LB) technique. Thiophenyl-modified SWNTs spreading solution in chloroform was prepared through amidation reaction of oxidized SWNTs. The resulting SWNTs were found to form stable colloidal suspensions in organic solvents, such as chloroform, which is a suitable solvent for the LB application. The compression of the thiophenyl-modified SWNTs spread onto the water surface of an LB trough leading to a uniform SWNT Langmuir monolayer, where SWNTs were aligned parallel to the trough barrier. Optical anisotropy of SWNTs LB films on quartz substrate was confirmed by polarized UV-Vis/NIR spectroscopic measurement. Moreover, the electrical conductivity of the resulting SWNT films, which were parallel to the tube axis, was found to be approximately 15 times higher than those that were perpendicular to the axis, reflecting anisotropic electrical properties due to the uniaxial alignment of individual SWNT bundles.

  13. Lamellar multilayer hexadecylaniline-modified gold nanoparticle films deposited by the Langmuir-Blodgett technique

    Indian Academy of Sciences (India)

    Anita Swami; Ashavani Kumar; Murali Sastry

    2003-06-01

    Organization of hexadecylaniline (HDA)-modified colloidal gold particles at the air-water interface and the formation thereafter of lamellar, multilayer films of gold nanoparticles by the Langmuir-Blodgett technique is described in this paper. Formation of HDA-capped gold nanoparticles is accomplished by a simple biphasic mixture experiment wherein the molecule hexadecylaniline present in the organic phase leads to electrostatic complexation and reduction of aqueous chloroaurate ions, capping of the gold nanoparticles thus formed and phase transfer of the now hydrophobic particles into the organic phase. Organization of gold nanoparticles at the air-water interface is followed by surface pressure-area isotherm measurements while the formation of multilayer films of the nanoparticles by the Langmuir-Blodgett technique is monitored by quartz crystal microgravimetry, UVVis spectroscopy, Fourier transform infrared spectroscopy and transmission electron microscopy.

  14. Investigation of SOL parameters and divertor particle flux from electric probe measurements in KSTAR

    Energy Technology Data Exchange (ETDEWEB)

    Bak, J.G., E-mail: jgbak@nfri.re.kr [National Fusion Research Institute, Daejeon (Korea, Republic of); Kim, H.S. [National Fusion Research Institute, Daejeon (Korea, Republic of); Bae, M.K. [Hanyang University, Seoul (Korea, Republic of); Juhn, J.W.; Seo, D.C.; Bang, E.N. [National Fusion Research Institute, Daejeon (Korea, Republic of); Shim, S.B. [Pusan National University, Pusan (Korea, Republic of); Chung, K.S. [Hanyang University, Seoul (Korea, Republic of); Lee, H.J. [Pusan National University, Pusan (Korea, Republic of); Hong, S.H. [National Fusion Research Institute, Daejeon (Korea, Republic of)

    2015-08-15

    The upstream scrape-off layer (SOL) profiles and downstream particle fluxes are measured with a fast reciprocating Langmuir probe assembly (FRLPA) at the outboard mid-plane and a fixed edge Langmuir probe array (ELPA) at divertor region, respectively in the KSTAR. It is found that the SOL has a two-layer structure in the outboard wall-limited (OWL) ohmic and L-mode: a near SOL (∼5 mm zone) with a narrow feature and a far SOL with a broader profile. The near SOL width evaluated from the SOL profiles in the OWL plasmas is comparable to the scaling for the L-mode divertor plasmas in the JET and AUG. In the SOL profiles and the divertor particle flux profile during the ELMy H-modes, the characteristic e-folding lengths of electron temperature, plasma density and particle flux during an ELM phase are about two times larger than ones at the inter ELM.

  15. Development of DNA probes for Candida albicans

    Energy Technology Data Exchange (ETDEWEB)

    Cheung, L.L.; Hudson, J.B.

    1988-07-01

    An attempt was made to produce DNA probes that could be used as a rapid and efficient means of detecting candidiasis (invasive Candida infection) in immunocompromised patients. Whole DNA from Candida albicans was digested with restriction endonuclease, and the resulting fragments were randomly cloned into a plasmid vector. Several recombinant plasmids were evaluated for cross-hybridization to various other Candida species, other fungal DNAs, and to nonfungal DNAs. Cross reactions were observed between the probes and different yeasts, but none with unrelated DNAs. Some recombinants were genus-specific, and two of these were applied to the analysis of C. albicans growth curves. It became evident that, although both /sup 32/P- and biotin-labelled probes could be made quite sensitive, a possible limitation in their diagnostic potential was the poor liberation of Candida DNA from cells. Thus, better methods of treatment of clinical specimens will be required before such probes will be useful in routine diagnosis.

  16. Heavy-ion-induced desorption of organic molecules studied with Langmuir-Blodgett multilayer systems (DE)

    Energy Technology Data Exchange (ETDEWEB)

    Schmidt, R.; Schoppmann, C.; Brandl, D.; Ostrowski, A.; Voit, H. (Physikalisches Institut der Universitaet Erlangen-Nuernberg D-8520 Erlangen, (Germany)); Johannsmann, D.; Knoll, W. (Max-Planck-Institut fuer Polymerforschung Mainz D-6500 Mainz, (Germany))

    1991-07-01

    Heavy-ion-induced desorption has been studied with samples consisting of Langmuir-Blodgett films made from Cd salts of fatty acids. The experiments confirm the result of previous works that heavy ions drill a crater into the sample surface. The explicit dependence of the crater depth on the electronic energy loss could be determined from the experiments. The craters exhibit the shape of a symmetric cone as obtained from a desorption model applied to the experimental data.

  17. Near-field nonlinear optical spectroscopy of Langmuir-Blodgett films

    DEFF Research Database (Denmark)

    Bozhevolnyi, Sergey I.; Geisler, T.

    1998-01-01

    Using an uncoated fiber tip as a light source and a multilayer Langmuir-Blodgett film of 2-docosylamino-5-nitropyridine as a sample, we obtain near-field images at the fundamental-harmonic (FH) and second-harmonic (SH) wavelengths for different polarizations and wavelengths of the pump light...... differently but predominantly in the dipping direction and whose SH efficiency is maximum for pump wavelengths in the range of 770-800 nm. (C) 1998 Optical Society of America....

  18. Field-effect transistor with MTDS contacts and subgate dielectric based on Langmuir films

    Science.gov (United States)

    Bannikov, V. S.; Matveeva, N. K.; Miagkov, I. V.; Novak, V. R.; Rakitin, V. V.

    1989-03-01

    Experimental results are reported on an MTDS (metal-tunnel-dielectric-semiconductor) FET with the following characteristics: the drain and source are MTDS contacts, with a monolayer Langmuir (ML) film playing the role of the tunnel dielectric; and the subgate dielectric is an ML film. The drain and source as well as the subgate dielectric are formed at low-temperature. The static output characteristics of an MTDP transistor are presented.

  19. Binding of Solvent Molecules to a Protein Surface in Binary Mixtures Follows a Competitive Langmuir Model.

    Science.gov (United States)

    Kulschewski, Tobias; Pleiss, Jürgen

    2016-09-06

    The binding of solvent molecules to a protein surface was modeled by molecular dynamics simulations of of Candida antarctica (C. antarctica) lipase B in binary mixtures of water, methanol, and toluene. Two models were analyzed: a competitive Langmuir model which assumes identical solvent binding sites with a different affinity toward water (KWat), methanol (KMet), and toluene (KTol) and a competitive Langmuir model with an additional interaction between free water and already bound water (KWatWat). The numbers of protein-bound molecules of both components of a binary mixture were determined for different compositions as a function of their thermodynamic activities in the bulk phase, and the binding constants were simultaneously fitted to the six binding curves (two components of three different mixtures). For both Langmuir models, the values of KWat, KMet, and KTol were highly correlated. The highest binding affinity was found for methanol, which was almost 4-fold higher than the binding affinities of water and toluene (KMet ≫ KWat ≈ KTol). Binding of water was dominated by the water-water interaction (KWatWat). Even for the three protein surface patches of highest water affinity, the binding affinity of methanol was 2-fold higher than water and 8-fold higher than toluene (KMet > KWat > KTol). The Langmuir model provides insights into the protein destabilizing mechanism of methanol which has a high binding affinity toward the protein surface. Thus, destabilizing solvents compete with intraprotein interactions and disrupt the tertiary structure. In contrast, benign solvents such as water or toluene have a low affinity toward the protein surface. Water is a special solvent: only few water molecules bind directly to the protein; most water molecules bind to already bound water molecules thus forming water patches. A quantitative mechanistic model of protein-solvent interactions that includes competition and miscibility of the components contributes a robust basis

  20. Observation of local radio emission associated with type III radio bursts and Langmuir waves

    Science.gov (United States)

    Reiner, M. J.; Stone, R. G.; Fainberg, J.

    1992-01-01

    The first clear detection of fundamental and harmonic radiation from the type III radio source region is presented. This radiation is characterized by its lack of frequency drift, its short rise and decay times, its relative weakness compared to the remotely observed radiation and its temporal coincidence with observed Langmuir waves. The observations were made with the radio and plasma frequency (URAP) receivers on the Ulysses spacecraft between about 1 and 2 AU from the Sun.