WorldWideScience

Sample records for hybrid automatic differentiation

  1. Automatic differentiation bibliography

    Energy Technology Data Exchange (ETDEWEB)

    Corliss, G.F. (comp.)

    1992-07-01

    This is a bibliography of work related to automatic differentiation. Automatic differentiation is a technique for the fast, accurate propagation of derivative values using the chain rule. It is neither symbolic nor numeric. Automatic differentiation is a fundamental tool for scientific computation, with applications in optimization, nonlinear equations, nonlinear least squares approximation, stiff ordinary differential equation, partial differential equations, continuation methods, and sensitivity analysis. This report is an updated version of the bibliography which originally appeared in Automatic Differentiation of Algorithms: Theory, Implementation, and Application.

  2. Automatic Differentiation Package

    Energy Technology Data Exchange (ETDEWEB)

    2007-03-01

    Sacado is an automatic differentiation package for C++ codes using operator overloading and C++ templating. Sacado provide forward, reverse, and Taylor polynomial automatic differentiation classes and utilities for incorporating these classes into C++ codes. Users can compute derivatives of computations arising in engineering and scientific applications, including nonlinear equation solving, time integration, sensitivity analysis, stability analysis, optimization and uncertainity quantification.

  3. Coordinated hybrid automatic repeat request

    KAUST Repository

    Makki, Behrooz

    2014-11-01

    We develop a coordinated hybrid automatic repeat request (HARQ) approach. With the proposed scheme, if a user message is correctly decoded in the first HARQ rounds, its spectrum is allocated to other users, to improve the network outage probability and the users\\' fairness. The results, which are obtained for single- and multiple-antenna setups, demonstrate the efficiency of the proposed approach in different conditions. For instance, with a maximum of M retransmissions and single transmit/receive antennas, the diversity gain of a user increases from M to (J+1)(M-1)+1 where J is the number of users helping that user.

  4. Automatic visual inspection of hybrid microcircuits

    Energy Technology Data Exchange (ETDEWEB)

    Hines, R.E.

    1980-05-01

    An automatic visual inspection system using a minicomputer and a video digitizer was developed for inspecting hybrid microcircuits (HMC) and thin-film networks (TFN). The system performed well in detecting missing components on HMCs and reduced the testing time for each HMC by 75%.

  5. Generalized fast automatic differentiation technique

    Science.gov (United States)

    Evtushenko, Yu. G.; Zubov, V. I.

    2016-11-01

    A new efficient technique intended for the numerical solution of a broad class of optimal control problems for complicated dynamical systems described by ordinary and/or partial differential equations is investigated. In this approach, canonical formulas are derived to precisely calculate the objective function gradient for a chosen finite-dimensional approximation of the objective functional.

  6. Aerodynamic Shape Optimization Using Hybridized Differential Evolution

    Science.gov (United States)

    Madavan, Nateri K.

    2003-01-01

    An aerodynamic shape optimization method that uses an evolutionary algorithm known at Differential Evolution (DE) in conjunction with various hybridization strategies is described. DE is a simple and robust evolutionary strategy that has been proven effective in determining the global optimum for several difficult optimization problems. Various hybridization strategies for DE are explored, including the use of neural networks as well as traditional local search methods. A Navier-Stokes solver is used to evaluate the various intermediate designs and provide inputs to the hybrid DE optimizer. The method is implemented on distributed parallel computers so that new designs can be obtained within reasonable turnaround times. Results are presented for the inverse design of a turbine airfoil from a modern jet engine. (The final paper will include at least one other aerodynamic design application). The capability of the method to search large design spaces and obtain the optimal airfoils in an automatic fashion is demonstrated.

  7. TMB: Automatic differentiation and laplace approximation

    DEFF Research Database (Denmark)

    Kristensen, Kasper; Nielsen, Anders; Berg, Casper Willestofte

    2016-01-01

    computations. The user defines the joint likelihood for the data and the random effects as a C++ template function, while all the other operations are done in R; e.g., reading in the data. The package evaluates and maximizes the Laplace approximation of the marginal likelihood where the random effects...... are automatically integrated out. This approximation, and its derivatives, are obtained using automatic differentiation (up to order three) of the joint likelihood. The computations are designed to be fast for problems with many random effects (approximate to 10(6)) and parameters (approximate to 10...

  8. A taxonomy of automatic differentiation tools

    Energy Technology Data Exchange (ETDEWEB)

    Juedes, D.W. (Iowa State Univ. of Science and Technology, Ames, IA (United States). Dept. of Computer Science)

    1991-01-01

    Many of the current automatic differentiation (AD) tools have similar characteristics. Unfortunately, the similarities between these various AD tools often cannot be easily ascertained by reading the corresponding documentation. To clarify this situation, a taxonomy of AD tools is presented. The taxonomy places AD tools into the Elemental, Extensional, Integral, Operational, and Symbolic classes. This taxonomy is used to classify twenty-nine AD tools. Each tool is examined individually with respect to the mode of differentiation used and the degree of derivatives computed. A list detailing the availability of the surveyed AD tools is provided in the Appendix. 54 refs., 3 figs., 1 tab.

  9. Automatic differentiation using vectorized hyper dual numbers

    Science.gov (United States)

    Swaroop, Kshitiz

    Sensitivity analysis is a method to measure the change in a dependent variable with respect to one or more independent variables with uses including optimization, design analysis and risk modeling. Conventional methods like finite difference suffer from both truncation, subtraction errors and cannot be used to simultaneously calculate derivatives of an output with respect to multiple inputs (commonly seen in optimization problems). Automatic Differentiation tackles all these issues successfully allowing us to calculate derivatives of any variable with respect to the independent variables in a computer program up to machine precision without any significant user input. Vectorized Hyper Dual Numbers, an extension of Hyper Dual Numbers, which allows the user to automatically calculate both the Hessian and derivative along with the function evaluation is developed for this thesis. The method is then used for the sizing and layup of a composite wind turbine blade as a proof of concept.

  10. Automatic differentiation for reduced sequential quadratic programming

    Institute of Scientific and Technical Information of China (English)

    Liao Liangcai; Li Jin; Tan Yuejin

    2007-01-01

    In order to slove the large-scale nonlinear programming (NLP) problems efficiently, an efficient optimization algorithm based on reduced sequential quadratic programming (rSQP) and automatic differentiation (AD) is presented in this paper. With the characteristics of sparseness, relatively low degrees of freedom and equality constraints utilized, the nonlinear programming problem is solved by improved rSQP solver. In the solving process, AD technology is used to obtain accurate gradient information. The numerical results show that the combined algorithm, which is suitable for large-scale process optimization problems, can calculate more efficiently than rSQP itself.

  11. On Fractional Order Hybrid Differential Equations

    Directory of Open Access Journals (Sweden)

    Mohamed A. E. Herzallah

    2014-01-01

    Full Text Available We develop the theory of fractional hybrid differential equations with linear and nonlinear perturbations involving the Caputo fractional derivative of order 0<α<1. Using some fixed point theorems we prove the existence of mild solutions for two types of hybrid equations. Examples are given to illustrate the obtained results.

  12. Automatic Facial Expression Recognition Based on Hybrid Approach

    Directory of Open Access Journals (Sweden)

    Ali K. K. Bermani

    2012-12-01

    Full Text Available The topic of automatic recognition of facial expressions deduce a lot of researchers in the late last century and has increased a great interest in the past few years. Several techniques have emerged in order to improve the efficiency of the recognition by addressing problems in face detection and extraction features in recognizing expressions. This paper has proposed automatic system for facial expression recognition which consists of hybrid approach in feature extraction phase which represent a combination between holistic and analytic approaches by extract 307 facial expression features (19 features by geometric, 288 feature by appearance. Expressions recognition is performed by using radial basis function (RBF based on artificial neural network to recognize the six basic emotions (anger, fear, disgust, happiness, surprise, sadness in addition to the natural.The system achieved recognition rate 97.08% when applying on person-dependent database and 93.98% when applying on person-independent.

  13. Hybrid Generative/Discriminative Learning for Automatic Image Annotation

    CERN Document Server

    Yang, Shuang Hong; Zha, Hongyuan

    2012-01-01

    Automatic image annotation (AIA) raises tremendous challenges to machine learning as it requires modeling of data that are both ambiguous in input and output, e.g., images containing multiple objects and labeled with multiple semantic tags. Even more challenging is that the number of candidate tags is usually huge (as large as the vocabulary size) yet each image is only related to a few of them. This paper presents a hybrid generative-discriminative classifier to simultaneously address the extreme data-ambiguity and overfitting-vulnerability issues in tasks such as AIA. Particularly: (1) an Exponential-Multinomial Mixture (EMM) model is established to capture both the input and output ambiguity and in the meanwhile to encourage prediction sparsity; and (2) the prediction ability of the EMM model is explicitly maximized through discriminative learning that integrates variational inference of graphical models and the pairwise formulation of ordinal regression. Experiments show that our approach achieves both su...

  14. AD Model Builder: using automatic differentiation for statistical inference of highly parameterized complex nonlinear models

    DEFF Research Database (Denmark)

    Fournier, David A.; Skaug, Hans J.; Ancheta, Johnoel

    2011-01-01

    Many criteria for statistical parameter estimation, such as maximum likelihood, are formulated as a nonlinear optimization problem.Automatic Differentiation Model Builder (ADMB) is a programming framework based on automatic differentiation, aimed at highly nonlinear models with a large number...

  15. Infinite Dimensional Differential Games with Hybrid Controls

    Indian Academy of Sciences (India)

    A J Shaiju; Sheetal Dharmatti

    2007-05-01

    A two-person zero-sum infinite dimensional differential game of infinite duration with discounted payoff involving hybrid controls is studied. The minimizing player is allowed to take continuous, switching and impulse controls whereas the maximizing player is allowed to take continuous and switching controls. By taking strategies in the sense of Elliott–Kalton, we prove the existence of value and characterize it as the unique viscosity solution of the associated system of quasi-variational inequalities.

  16. Clad — Automatic Differentiation Using Clang and LLVM

    Science.gov (United States)

    Vassilev, V.; Vassilev, M.; Penev, A.; Moneta, L.; Ilieva, V.

    2015-05-01

    Differentiation is ubiquitous in high energy physics, for instance in minimization algorithms and statistical analysis, in detector alignment and calibration, and in theory. Automatic differentiation (AD) avoids well-known limitations in round-offs and speed, which symbolic and numerical differentiation suffer from, by transforming the source code of functions. We will present how AD can be used to compute the gradient of multi-variate functions and functor objects. We will explain approaches to implement an AD tool. We will show how LLVM, Clang and Cling (ROOT's C++11 interpreter) simplifies creation of such a tool. We describe how the tool could be integrated within any framework. We will demonstrate a simple proof-of-concept prototype, called Clad, which is able to generate n-th order derivatives of C++ functions and other language constructs. We also demonstrate how Clad can offload laborious computations from the CPU using OpenCL.

  17. Hybrid singular systems of differential equations

    Institute of Scientific and Technical Information of China (English)

    殷刚; 张纪峰

    2002-01-01

    This work develops hybrid models for large-scale singular differential system and analyzestheir asymptotic properties. To take into consideration the discrete shifts in regime across whichthe behavior of the corresponding dynamic systems is markedly different, our goals are to develophybrid systems in which continuous dynamics are intertwined with discrete events under random-jumpdisturbances and to reduce complexity of large-scale singular systems via singularly perturbed Markovchains. To reduce the complexity of large-scale hybrid singular systems, two-time scale is used in theformulation. Under general assumptions, limit behavior of the underlying system is examined. Usingweak convergence methods, it is shown that the systems can be approximated by limit systems inwhich the coefficients are averaged out with respect to the quasi-stationary distributions. Since thelimit systems have fewer states, the complexity is much reduced.

  18. Optimum Shape Design Using Automatic Differentiation in Reverse Mode

    Science.gov (United States)

    Hafez, M.; Mohammadi, B.; Pironneau, O.

    1996-01-01

    This paper shows how to use automatic differentiation in reverse mode as a powerful tool in optimization procedures. It is also shown that for aerodynamic applications the gradients have to be as accurate as possible. In particular, the effect of having the exact gradient of he first or second order spatial discretization schemes is presented. We show that the loss of precision in the gradient affects not only the convergence, but also the final shape. Both two and three dimensional configurations of transonic and supersonic flows have been investigated. These cases involve up to several thousand control parameters.

  19. Towards the automatized evaluation of Feynman integrals with differential equations

    Energy Technology Data Exchange (ETDEWEB)

    Meyer, Christoph; Uwer, Peter [HU Berlin, Berlin (Germany)

    2016-07-01

    In the past years the method of differential equations has proven itself to be a powerful tool for the computation of multi-loop Feynman integrals. This method relies on the choice of a basis of master integrals in which the dependence on the dimensional regulator factorizes. We present an algorithm which automatizes the transformation to such a basis, starting from a given reduction basis. The algorithm only requires some mild assumptions about the basis. It applies to problems with multiple scales of which we will present some examples.

  20. Hybrid Differential Dynamic Programming with Stochastic Search

    Science.gov (United States)

    Aziz, Jonathan; Parker, Jeffrey; Englander, Jacob

    2016-01-01

    Differential dynamic programming (DDP) has been demonstrated as a viable approach to low-thrust trajectory optimization, namely with the recent success of NASAs Dawn mission. The Dawn trajectory was designed with the DDP-based Static Dynamic Optimal Control algorithm used in the Mystic software. Another recently developed method, Hybrid Differential Dynamic Programming (HDDP) is a variant of the standard DDP formulation that leverages both first-order and second-order state transition matrices in addition to nonlinear programming (NLP) techniques. Areas of improvement over standard DDP include constraint handling, convergence properties, continuous dynamics, and multi-phase capability. DDP is a gradient based method and will converge to a solution nearby an initial guess. In this study, monotonic basin hopping (MBH) is employed as a stochastic search method to overcome this limitation, by augmenting the HDDP algorithm for a wider search of the solution space.

  1. Automatic differentiation for Fourier series and the radii polynomial approach

    Science.gov (United States)

    Lessard, Jean-Philippe; Mireles James, J. D.; Ransford, Julian

    2016-11-01

    In this work we develop a computer-assisted technique for proving existence of periodic solutions of nonlinear differential equations with non-polynomial nonlinearities. We exploit ideas from the theory of automatic differentiation in order to formulate an augmented polynomial system. We compute a numerical Fourier expansion of the periodic orbit for the augmented system, and prove the existence of a true solution nearby using an a-posteriori validation scheme (the radii polynomial approach). The problems considered here are given in terms of locally analytic vector fields (i.e. the field is analytic in a neighborhood of the periodic orbit) hence the computer-assisted proofs are formulated in a Banach space of sequences satisfying a geometric decay condition. In order to illustrate the use and utility of these ideas we implement a number of computer-assisted existence proofs for periodic orbits of the Planar Circular Restricted Three-Body Problem (PCRTBP).

  2. Automatic Differential Diagnosis of Melanocytic Skin Tumors Using Ultrasound Data.

    Science.gov (United States)

    Andrėkutė, Kristina; Linkevičiūtė, Gintarė; Raišutis, Renaldas; Valiukevičienė, Skaidra; Makštienė, Jurgita

    2016-12-01

    We describe a novel automatic diagnostic system based on quantitative analysis of ultrasound data for differential diagnosis of melanocytic skin tumors. The proposed method has been tested on 160 ultrasound data sets (80 of malignant melanoma and 80 of benign melanocytic nevi). Acoustical, textural and shape features have been evaluated for each segmented lesion. Using parameters selected according to Mahalanobis distance and linear support vector machine classifier, we are able to differentiate malignant melanoma from benign melanocytic skin tumors with 82.4% accuracy (sensitivity = 85.8%, specificity = 79.6%). The results indicate that high-frequency ultrasound has the potential to be used for differential diagnosis of melanocytic skin tumors and to provide supplementary information on lesion penetration depth. The proposed system can be used as an additional tool for clinical decision support to improve the early-stage detection of malignant melanoma. Copyright © 2016 World Federation for Ultrasound in Medicine & Biology. Published by Elsevier Inc. All rights reserved.

  3. Differential dynamic logics - automated theorem proving for hybrid systems

    OpenAIRE

    Platzer, André

    2008-01-01

    Hybrid systems are models for complex physical systems and are defined as dynamical systems with interacting discrete transitions and continuous evolutions along differential equations. With the goal of developing a theoretical and practical foundation for deductive verification of hybrid systems, we introduce differential dynamic logic as a new logic with which correctness properties of hybrid systems with parameterized system dynamics can be specified and verified naturally. As a verificati...

  4. A HYBRID METHOD FOR AUTOMATIC COUNTING OF MICROORGANISMS IN MICROSCOPIC IMAGES

    OpenAIRE

    2016-01-01

    Microscopic image analysis is an essential process to enable the automatic enumeration and quantitative analysis of microbial images. There are several system are available for numerating microbial growth. Some of the existing method may be inefficient to accurately count the overlapped microorganisms. Therefore, in this paper we proposed an efficient method for automatic segmentation and counting of microorganisms in microscopic images. This method uses a hybrid approach based on...

  5. Differential Emission Measure: Forward Folding vs. Automatic Inversion

    Science.gov (United States)

    Allen, J. D.; Schmelz, J. T.

    2002-05-01

    When attempting to compare models and observations of the solar corona, an accurate determination of the multi-thermal distribution of the plasma along the line of sight is clearly superior to the single value of temperature obtained from an isothermal approximation. But methods of determining the Differential Emission Measure (DEM) are fraught with pitfalls. Forward Folding is subjective and time consuming: an initial model DEM curve is convolved with the emissivity function of the spectral lines. This produces a set of predicted intensities that are compared with the observed values. The emission measure distribution is then adjusted manually to improve the agreement between the observed and predicted intensities while keeping the curve as smooth a function of temperature as possible. The process is repeated until, ideally, the predicted and observed intensities agree to within approximately 1-2 sigma. Automatic inversion techniques are mathematically ill posed, so small changed in the observed spectral line intensities can result in large differences in the DEM solution. The programs are too often used as a 'black box,' and the physical relevance of these solutions has (rightfully so) been questioned. We attempt to minimize these pitfalls by comparing and contrasting the temperature distributions obtained from forward folding with two different automatic inversion techniques. We used three different data sets: (1) SERTS iron line intensities of an active region from the 1993 Aug 17 rocket flight; (2) Solar Maximum Mission Flat Crystal Spectrometer data for a flare on 1980 Aug 30; and (3) XSST spectral data of a flare from the 1982 Jul 13 rocket flight. Solar physics research at the University of Memphis is supported by NASA grant NAG5-9783.

  6. Hybrid Control of a Two-Wheeled Automatic-Balancing Robot with Backlash Feature

    DEFF Research Database (Denmark)

    Løhndorf, Petar Durdevic; Yang, Zhenyu

    2013-01-01

    This paper investigates the application of hybrid control for an automatic balancing robot system subject to backlash effect. The developed controller is a type of sliding mode controller, refereed to as a switching controller, with respect to different situations i.e., whether the backlash...

  7. Hybrid Multiagent System for Automatic Object Learning Classification

    Science.gov (United States)

    Gil, Ana; de La Prieta, Fernando; López, Vivian F.

    The rapid evolution within the context of e-learning is closely linked to international efforts on the standardization of learning object metadata, which provides learners in a web-based educational system with ubiquitous access to multiple distributed repositories. This article presents a hybrid agent-based architecture that enables the recovery of learning objects tagged in Learning Object Metadata (LOM) and provides individualized help with selecting learning materials to make the most suitable choice among many alternatives.

  8. A Hybrid Differential Invasive Weed Algorithm for Congestion Management

    Science.gov (United States)

    Basak, Aniruddha; Pal, Siddharth; Pandi, V. Ravikumar; Panigrahi, B. K.; Das, Swagatam

    This work is dedicated to solve the problem of congestion management in restructured power systems. Nowadays we have open access market which pushes the power system operation to their limits for maximum economic benefits but at the same time making the system more susceptible to congestion. In this regard congestion management is absolutely vital. In this paper we try to remove congestion by generation rescheduling where the cost involved in the rescheduling process is minimized. The proposed algorithm is a hybrid of Invasive Weed Optimization (IWO) and Differential Evolution (DE). The resultant hybrid algorithm was applied on standard IEEE 30 bus system and observed to beat existing algorithms like Simple Bacterial foraging (SBF), Genetic Algorithm (GA), Invasive Weed Optimization (IWO), Differential Evolution (DE) and hybrid algorithms like Hybrid Bacterial Foraging and Differential Evolution (HBFDE) and Adaptive Bacterial Foraging with Nelder Mead (ABFNM).

  9. A HYBRID METHOD FOR AUTOMATIC COUNTING OF MICROORGANISMS IN MICROSCOPIC IMAGES

    Directory of Open Access Journals (Sweden)

    P.Kalavathi

    2016-03-01

    Full Text Available Microscopic image analysis is an essential process to enable the automatic enumeration and quantitative analysis of microbial images. There are several system are available for numerating microbial growth. Some of the existing method may be inefficient to accurately count the overlapped microorganisms. Therefore, in this paper we proposed an efficient method for automatic segmentation and counting of microorganisms in microscopic images. This method uses a hybrid approach based on morphological operation, active contour model and counting by region labelling process. The colony count value obtained by this proposed method is compared with the manual count and the count value obtained from the existing method

  10. On automatic differentiation of codes with COMPLEX arithmetic with respect to real variables

    Energy Technology Data Exchange (ETDEWEB)

    Pusch, G.D.; Bischof, C. [Argonne National Lab., IL (United States); Carle, A. [Rice Univ., St. Houston, TX (United States)

    1995-06-01

    We explore what it means to apply automatic differentiation with respect to a set of real variables to codes containing complex arithmetic. That is, both dependent and independent variables with respect to differentiation are real variables, but in order to exploit features of complex mathematics, part of the code is expressed by employing complex arithmetic. We investigate how one can apply automatic differentiation to complex variables if one exploits the homomorphism of the complex numbers C onto R{sup 2}. It turns out that, by and large, the usual rules of differentiation apply, but subtle differences in special cases arise for sqrt (), abs (), and the power operator.

  11. Differential Game Logic for Hybrid Games

    Science.gov (United States)

    2012-03-01

    constraints. Proof. When, for notational convenience, we assume the ( vectorial ) differential equation x′ = θ(x) to contain a clock x′0 = 1 and that t0 and z are...Decision Method for Elementary Algebra and Geometry. University of California Press, Berkeley, 2nd edition, 1951. [TLS00] Claire J. Tomlin, John Lygeros

  12. A digital-analog hybrid system and its application to the automatic flight control system simulation research

    Science.gov (United States)

    1981-01-01

    The characteristics of a digital-analog hybrid system composed of a DJS-8 digital computer and a HMJ-200 analog computer are described as well as its applications to simulation research for an automatic flight control system. A hybrid computational example is included to illustrate the application.

  13. Automatic differentiation tools in the dynamic simulation of chemical engineering processes

    Directory of Open Access Journals (Sweden)

    Castro M.C.

    2000-01-01

    Full Text Available Automatic Differentiation is a relatively recent technique developed for the differentiation of functions applicable directly to the source code to compute the function written in standard programming languages. That technique permits the automatization of the differentiation step, crucial for dynamic simulation and optimization of processes. The values for the derivatives obtained with AD are exact (to roundoff. The theoretical exactness of the AD comes from the fact that it uses the same rules of differentiation as in differential calculus, but these rules are applied to an algorithmic specification of the function rather than to a formula. The main purpose of this contribution is to discuss the impact of Automatic Differentiation in the field of dynamic simulation of chemical engineering processes. The influence of the differentiation technique on the behavior of the integration code, the performance of the generated code and the incorporation of AD tools in consistent initialization tools are discussed from the viewpoint of dynamic simulation of typical models in chemical engineering.

  14. A Hybrid Backtracking Search Optimization Algorithm with Differential Evolution

    Directory of Open Access Journals (Sweden)

    Lijin Wang

    2015-01-01

    Full Text Available The backtracking search optimization algorithm (BSA is a new nature-inspired method which possesses a memory to take advantage of experiences gained from previous generation to guide the population to the global optimum. BSA is capable of solving multimodal problems, but it slowly converges and poorly exploits solution. The differential evolution (DE algorithm is a robust evolutionary algorithm and has a fast convergence speed in the case of exploitive mutation strategies that utilize the information of the best solution found so far. In this paper, we propose a hybrid backtracking search optimization algorithm with differential evolution, called HBD. In HBD, DE with exploitive strategy is used to accelerate the convergence by optimizing one worse individual according to its probability at each iteration process. A suit of 28 benchmark functions are employed to verify the performance of HBD, and the results show the improvement in effectiveness and efficiency of hybridization of BSA and DE.

  15. Using Hybrid Decision Tree -Houph Transform Approach For Automatic Bank Check Processing

    Directory of Open Access Journals (Sweden)

    Heba A. Elnemr

    2012-05-01

    Full Text Available One of the first steps in the realization of an automatic system of bank check processing is the automatic classification of checks and extraction of handwritten area. This paper presents a new hybrid method which couple together the statistical color histogram features, the entropy, the energy and the Houph transform to achieve the automatic classification of checks as well as the segmentation and recognition of the various information on the check. The proposed method relies on two stages. First, a two-step classification algorithm is implemented. In the first step, a decision classification tree is built using the entropy, the energy, the logo location and histogram features of colored bank checks. These features are used to classify checks into several groups. Each group may contain one or more type of checks. Therefore, in the second step the bank logo or bank name are matched against its stored template to identify the correct prototype. Second, Hough transform is utilized to detect lines in the classified checks. These lines are used as indicator to the bank check fields. A group of experiments is performed showing that the proposed technique is promising as regards classifying the bank checks and extracting the important fields in that check.

  16. A Set of SCAR Markers Efficiently Differentiating Hybrid Rice

    Institute of Scientific and Technical Information of China (English)

    LI Shu-jing; XIE Hong-wei; QIAN Ming-juan; CHEN Guang-hui; LI Shao-qing; ZHU Ying-guo

    2012-01-01

    Molecular markers have been widely used in crop genetic improvement,seed test and genetic mapping.Of which,sequence characterized amplified region (SCAR) markers are particularly popular for its diversity,stable reproducibility,and suitability for analyzing large number of samples.In this study,500 random amplified polymorphic DNA (RAPD) primers were tested,and a set of SCAR markers comprising 37 pairs of loci-specific primers were developed from the DNA fragments ranging from 300 to 1000 bp which correspond to the stable,distinctive RAPD banding patterns.Using these SCAR markers,59 hybrid rice combinations were assessed and distinguished into 58 subgroups at the similarity coefficient of 0.97 in a genetic clustering tree based on the allele diversities of the SCAR markers.Furthermore,13 hybrid rice combinations were reassayed with 40 randomly selected simple sequence repeat (SSR) markers to evaluate the effectiveness of these SCAR markers.SSR markers produced similar results to SCAR markers as the 13 hybrid rice combinations were completely separated at the similarity coefficient of 0.91 in the clustering tree established from SSR patterns.Taken together,SCAR markers prove to be effective tools for identifying and differentiating hybrid rice combinations.

  17. A Set of SCAR Markers Efficiently Differentiating Hybrid Rice

    Directory of Open Access Journals (Sweden)

    Shu-jing LI

    2012-03-01

    Full Text Available Molecular markers have been widely used in crop genetic improvement, seed test and genetic mapping. Of which, sequence characterized amplified region (SCAR markers are particularly popular for its diversity, stable reproducibility, and suitability for analyzing large number of samples. In this study, 500 random amplified polymorphic DNA (RAPD primers were tested, and a set of SCAR markers comprising 37 pairs of loci-specific primers were developed from the DNA fragments ranging from 300 to 1000 bp which correspond to the stable, distinctive RAPD banding patterns. Using these SCAR markers, 59 hybrid rice combinations were assessed and distinguished into 58 subgroups at the similarity coefficient of 0.97 in a genetic clustering tree based on the allele diversities of the SCAR markers. Furthermore, 13 hybrid rice combinations were reassayed with 40 randomly selected simple sequence repeat (SSR markers to evaluate the effectiveness of these SCAR markers. SSR markers produced similar results to SCAR markers as the 13 hybrid rice combinations were completely separated at the similarity coefficient of 0.91 in the clustering tree established from SSR patterns. Taken together, SCAR markers prove to be effective tools for identifying and differentiating hybrid rice combinations.

  18. OPTIMAL TORQUE CONTROL STRATEGY FOR PARALLEL HYBRID ELECTRIC VEHICLE WITH AUTOMATIC MECHANICAL TRANSMISSION

    Institute of Scientific and Technical Information of China (English)

    GU Yanchun; YIN Chengliang; ZHANG Jianwu

    2007-01-01

    In parallel hybrid electrical vehicle (PHEV) equipped with automatic mechanical transmission (AMT), the driving smoothness and the clutch abrasion are the primary considerations for powertrain control during gearshift and clutch operation. To improve these performance indexes of PHEV, a coordinated control system is proposed through the analyzing of HEV powertrain dynamic characteristics. Using the method of minimum principle, the input torque of transmission is optimized to improve the driving sinoothness of vehicle. Using the methods of fuzzy logic and fuzzy-PID, the engaging speed of clutch and the throttle opening of engine are manipulated to ensure the smoothness of clutch engagement and reduce the abrasion of clutch friction plates. The motor provides the difference between the required input torque of transmission and the torque transmitted through clutch plates. Results of simulation and experiments show that the proposed control strategy performs better than the contrastive control system, the smoothness of driving and the abrasion of clutch can be improved simultaneously.

  19. Regenerative braking control strategy in mild hybrid electric vehicles equipped with automatic manual transmission

    Institute of Scientific and Technical Information of China (English)

    QIN Datong; YE Ming; LIU Zhenjun

    2007-01-01

    The actual regenerative braking force of an integrated starter/generator (ISG),which is varied with desired braking deceleration and vehicle speed,is calculated based on an analysis of the required deceleration,maximum braking force of ISG,engine braking force and state of charge (SOC) of battery.Braking force distribution strategies are presented according to the actual regenerative braking force of ISG.To recover the vehicle's kinetic energy maximally,braking shift rules for a mild hybrid electric vehicle (HEV) equipped with automatic manual transmission (AMT) are brought forward and effects of transmission ratios are considered.A test-bed is built up and regenerative braking tests are carried out.The results show that power recovered by the braking shift rules is more than that recovered by the normal braking control rules.

  20. Interspecific differentiation and hybridization in vanilla species (Orchidaceae)

    DEFF Research Database (Denmark)

    Nielsen, Lene Rostgaard; Siegismund

    1999-01-01

    that the genetic composition of the three species is also very similar: they deviate mainly from each other in allele frequencies rather than by specific alleles. A hierarchical analysis of genetic differentiation showed that the between-species component is slightly higher (FSG=0.237) than the component between...... populations within species (FPS=0.141). Nevertheless, they are efficiently recognized by their genotypic compositions. In V. barbellata and V. claviculata 97-99% of all individuals were assigned to the correct species. Assignment to a wrong species occurred only with individuals at localities where species...... coexist. This suggests that the species may hybridize....

  1. Design of Underwater Robot Lines Based on a Hybrid Automatic Optimization Strategy

    Institute of Scientific and Technical Information of China (English)

    Wenjing Lyu; Weilin Luo

    2014-01-01

    In this paper, a hybrid automatic optimization strategy is proposed for the design of underwater robot lines. Isight is introduced as an integration platform. The construction of this platform is based on the user programming and several commercial software including UG6.0, GAMBIT2.4.6 and FLUENT12.0. An intelligent parameter optimization method, the particle swarm optimization, is incorporated into the platform. To verify the strategy proposed, a simulation is conducted on the underwater robot model 5470, which originates from the DTRC SUBOFF project. With the automatic optimization platform, the minimal resistance is taken as the optimization goal;the wet surface area as the constraint condition; the length of the fore-body, maximum body radius and after-body’s minimum radius as the design variables. With the CFD calculation, the RANS equations and the standard turbulence model are used for direct numerical simulation. By analyses of the simulation results, it is concluded that the platform is of high efficiency and feasibility. Through the platform, a variety of schemes for the design of the lines are generated and the optimal solution is achieved. The combination of the intelligent optimization algorithm and the numerical simulation ensures a global optimal solution and improves the efficiency of the searching solutions.

  2. Speedup for quantum optimal control from automatic differentiation based on graphics processing units

    Science.gov (United States)

    Leung, Nelson; Abdelhafez, Mohamed; Koch, Jens; Schuster, David

    2017-04-01

    We implement a quantum optimal control algorithm based on automatic differentiation and harness the acceleration afforded by graphics processing units (GPUs). Automatic differentiation allows us to specify advanced optimization criteria and incorporate them in the optimization process with ease. We show that the use of GPUs can speedup calculations by more than an order of magnitude. Our strategy facilitates efficient numerical simulations on affordable desktop computers and exploration of a host of optimization constraints and system parameters relevant to real-life experiments. We demonstrate optimization of quantum evolution based on fine-grained evaluation of performance at each intermediate time step, thus enabling more intricate control on the evolution path, suppression of departures from the truncated model subspace, as well as minimization of the physical time needed to perform high-fidelity state preparation and unitary gates.

  3. Carrier-phase differential GPS for automatic control of land vehicles

    Science.gov (United States)

    O'Connor, Michael Lee

    Real-time centimeter-level navigation has countless potential applications in land vehicles, including precise topographic field mapping, runway snowplowing in bad weather, and land mine detection and avoidance. Perhaps the most obvious and immediate need for accurate, robust land vehicle sensing is in the guidance and control of agricultural vehicles. Accurate guidance and automatic control of farm vehicles offers many potential advantages; however, previous attempts to automate these vehicles have been unsuccessful due to sensor limitations. With the recent development of real-time carrier-phase differential GPS (CDGPS), a single inexpensive GPS receiver can measure a vehicle's position to within a few centimeters and orientation to fractions of a degree. This ability to provide accurate real-time measurements of multiple vehicle states makes CDGPS ideal for automatic control of vehicles. This work describes the theoretical and experimental work behind the first successfully demonstrated automatic control system for land vehicles based on CDGPS. An extension of pseudolite-based CDGPS initialization methods was explored for land vehicles and demonstrated experimentally. Original land vehicle dynamic models were developed and identified using this innovative sensor. After initial automatic control testing using a Yamaha Fleetmaster golf cart, a centimeter-level, fully autonomous row guidance capability was demonstrated on a John Deere 7800 farm tractor.

  4. DNAD, a simple tool for automatic differentiation of Fortran codes using dual numbers

    Science.gov (United States)

    Yu, Wenbin; Blair, Maxwell

    2013-05-01

    DNAD (dual number automatic differentiation) is a simple, general-purpose tool to automatically differentiate Fortran codes written in modern Fortran (F90/ 95/2003) or legacy codes written in previous version of the Fortran language. It implements the forward mode of automatic differentiation using the arithmetic of dual numbers and the operator overloading feature of F90/ 95/2003. Very minimum changes of the source codes are needed to compute the first derivatives of Fortran programs. The advantages of DNAD in comparison to other existing similar computer codes are its programming simplicity, extensibility, and computational efficiency. Specifically, DNAD is more accurate and efficient than the popular complex-step approximation. Several examples are used to demonstrate its applications and advantages. Program summaryProgram title: DNAD Catalogue identifier: AEOS_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AEOS_v1_0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: Standard CPC licence, http://cpc.cs.qub.ac.uk/licence/licence.html No. of lines in distributed program, including test data, etc.: 3922 No. of bytes in distributed program, including test data, etc.: 18 275 Distribution format: tar.gz Programming language: Fortran 90/95/2003. Computer: All computers with a modern FORTRAN compiler. Operating system: All platforms with a modern FORTRAN compiler. Classification: 4.12, 6.2. Nature of problem: Derivatives of outputs with respect to inputs of a Fortran code are often needed in physics, chemistry, and engineering. The author of the analysis code may no longer be available and the user may not have a deep knowledge of the code. Thus a simple tool is necessary to automatically differentiate the code with very minimum change to the source codes. This can be achieved using dual number arithmetic and operator overloading. Solution method: A new data type is defined with the first scalar

  5. A HYBRID METHOD FOR AUTOMATIC SPEECH RECOGNITION PERFORMANCE IMPROVEMENT IN REAL WORLD NOISY ENVIRONMENT

    Directory of Open Access Journals (Sweden)

    Urmila Shrawankar

    2013-01-01

    Full Text Available It is a well known fact that, speech recognition systems perform well when the system is used in conditions similar to the one used to train the acoustic models. However, mismatches degrade the performance. In adverse environment, it is very difficult to predict the category of noise in advance in case of real world environmental noise and difficult to achieve environmental robustness. After doing rigorous experimental study it is observed that, a unique method is not available that will clean the noisy speech as well as preserve the quality which have been corrupted by real natural environmental (mixed noise. It is also observed that only back-end techniques are not sufficient to improve the performance of a speech recognition system. It is necessary to implement performance improvement techniques at every step of back-end as well as front-end of the Automatic Speech Recognition (ASR model. Current recognition systems solve this problem using a technique called adaptation. This study presents an experimental study that aims two points, first is to implement the hybrid method that will take care of clarifying the speech signal as much as possible with all combinations of filters and enhancement techniques. The second point is to develop a method for training all categories of noise that can adapt the acoustic models for a new environment that will help to improve the performance of the speech recognizer under real world environmental mismatched conditions. This experiment confirms that hybrid adaptation methods improve the ASR performance on both levels, (Signal-to-Noise Ratio SNR improvement as well as word recognition accuracy in real world noisy environment.

  6. Design of hybrid automatic repeat request (HARQ)for TDD-OFDM system

    Institute of Scientific and Technical Information of China (English)

    Wen Na; Zhang Ping

    2008-01-01

    Reliability-based hybrid automatic repeat request (HARQ) (RB-HARQ) is a recently developed form of incremental-redundancy ARQ.It achieves good performance whereas large retransmission request packets should be fed back.In this paper, in order to reduce the number of the fed back bits, we propose a HARQ scheme applied in time duplex division orthogonal frequency division multiplexing (TDDOFDM) system over the slow fading channel which is named channel-based HARQ (CB-HARQ).Because one bit which meets deep fading is always with small value of log likelihood ratio (LLR) during the process of decoding of LDPC code, the bits transmitted on the carrier with deep fading are retransmitted.At the receiver, the decoder will compute the locations of retransmission bits according to the channel fading values which are gotten by utilizing the feature of channel symmetry in TDD mode.So the indices of retransmission bits are avoided to be transmitted.Simulation results show that this method achieves better BER performance and requires much smaller request packets in feedback link.

  7. Automatic aerial image shadow detection through the hybrid analysis of RGB and HIS color space

    Science.gov (United States)

    Wu, Jun; Li, Huilin; Peng, Zhiyong

    2015-12-01

    This paper presents our research on automatic shadow detection from high-resolution aerial image through the hybrid analysis of RGB and HIS color space. To this end, the spectral characteristics of shadow are firstly discussed and three kinds of spectral components including the difference between normalized blue and normalized red component - BR, intensity and saturation components are selected as criterions to obtain initial segmentation of shadow region (called primary segmentation). After that, within the normalized RGB color space and HIS color space, the shadow region is extracted again (called auxiliary segmentation) using the OTSU operation, respectively. Finally, the primary segmentation and auxiliary segmentation are combined through a logical AND-connection operation to obtain reliable shadow region. In this step, small shadow areas are removed from combined shadow region and morphological algorithms are apply to fill small holes as well. The experimental results show that the proposed approach can effectively detect the shadow region from high-resolution aerial image and in high degree of automaton.

  8. Application of fast automatic differentiation for solving the inverse coefficient problem for the heat equation

    Science.gov (United States)

    Zubov, V. I.

    2016-10-01

    The problem of determining the thermal conductivity coefficient that depends on temperature is studied. The consideration is based on the initial-boundary value problem for the one-dimensional unsteady heat equation. The mean-root-square deviation of the temperature distribution field and the heat flux from the experimental data on the left boundary of the domain is used as the objective functional. An analytical expression for the gradient of the objective functional is obtained. An algorithm for the numerical solution of the problem based on the modern fast automatic differentiation technique is proposed. Examples of solving the problem are discussed.

  9. Differentiation of mouse embryonic stem cells and their hybrids during embryoid body formation

    Directory of Open Access Journals (Sweden)

    Josane Mittmann

    2002-01-01

    Full Text Available We studied the karyotypes of three hybrid clones of mouse embryonic stem cells and murine splenocytes (two having near diploid and one having near tetraploid chromosome numbers and the characteristics of their differentiation during the formation of embryoid bodies. The X chromosome originating from embryonic stem cells may be lost in hybrids with a near diploid chromosome number and reprogramming of the "somatic" X may occur. The morphological data we obtained using light and electron microscopy revealed a correlation between the karyotype constitution of hybrid cells and their differentiation during the formation of embryoid bodies. At the beginning of development, the embryoid bodies derived from hybrid cells already showed an advanced degree of differentiation. The production of significant quantities of cartilage was typical for hybrid cells with near tetraploid chromosome numbers. The hybrid cells showed restricted pluripotent capacity and were already committed when they started to differentiate into embryoid bodies.

  10. Automatic versus manual model differentiation to compute sensitivities and solve non-linear inverse problems

    Science.gov (United States)

    Elizondo, D.; Cappelaere, B.; Faure, Ch.

    2002-04-01

    Emerging tools for automatic differentiation (AD) of computer programs should be of great benefit for the implementation of many derivative-based numerical methods such as those used for inverse modeling. The Odyssée software, one such tool for Fortran 77 codes, has been tested on a sample model that solves a 2D non-linear diffusion-type equation. Odyssée offers both the forward and the reverse differentiation modes, that produce the tangent and the cotangent models, respectively. The two modes have been implemented on the sample application. A comparison is made with a manually-produced differentiated code for this model (MD), obtained by solving the adjoint equations associated with the model's discrete state equations. Following a presentation of the methods and tools and of their relative advantages and drawbacks, the performances of the codes produced by the manual and automatic methods are compared, in terms of accuracy and of computing efficiency (CPU and memory needs). The perturbation method (finite-difference approximation of derivatives) is also used as a reference. Based on the test of Taylor, the accuracy of the two AD modes proves to be excellent and as high as machine precision permits, a good indication of Odyssée's capability to produce error-free codes. In comparison, the manually-produced derivatives (MD) sometimes appear to be slightly biased, which is likely due to the fact that a theoretical model (state equations) and a practical model (computer program) do not exactly coincide, while the accuracy of the perturbation method is very uncertain. The MD code largely outperforms all other methods in computing efficiency, a subject of current research for the improvement of AD tools. Yet these tools can already be of considerable help for the computer implementation of many numerical methods, avoiding the tedious task of hand-coding the differentiation of complex algorithms.

  11. The Sensitivity of Hybrid Differential Stereoscopy for Spectral Imaging

    CERN Document Server

    DeForest, Craig E

    2007-01-01

    Stereoscopic spectral imaging is an observing technique that affords rapid acquisition of limited spectral information over an entire image plane simultaneously. Light from a telescope is dispersed into multiple spectral orders, which are imaged separately, and two or more of the dispersed images are combined using an analogy between the (x,y,\\lambda) spectral data space and conventional (x,y,z) three-space. Because no photons are deliberately destroyed during image acquisition, the technique is much more photon-efficient in some observing regimes than existing techniques such as scanned-filtergraph or scanned-slit spectral imaging. Hybrid differential stereoscopy, which uses a combination of conventional cross-correlation stereoscopy and linear approximation theory to extract the central wavelength of a spectral line, has been used to produce solar Stokes-V (line-of-sight) magnetograms in the 617.34 nm Fe I line, and more sophisticated inversion techniques are currently being used to derive Doppler and line ...

  12. Experiences with the application of the ADIC automatic differentiation tool for to the CSCMDO 3-D volume grid generation code

    Energy Technology Data Exchange (ETDEWEB)

    Bischof, C.H.; Mauer, A. [Argonne National Lab., IL (United States). Mathematics and Computer Science Division; Jones, W.T. [Computer Sciences Corp., Hampton, VA (United States)] [and others

    1995-12-31

    Automatic differentiation (AD) is a methodology for developing reliable sensitivity-enhanced versions of arbitrary computer programs with little human effort. It can vastly accelerate the use of advanced simulation codes in multidisciplinary design optimization, since the time for generating and verifying derivative codes is greatly reduced. In this paper, we report on the application of the recently developed ADIC automatic differentiation tool for ANSI C programs to the CSCMDO multiblock three-dimensional volume grid generator. The ADIC-generated code can easily be interfaced with Fortran derivative codes generated with the ADIFOR AD tool FORTRAN 77 programs, thus providing efficient sensitivity-enhancement techniques for multilanguage, multidiscipline problems.

  13. Automatic generation of smart earthquake-resistant building system: Hybrid system of base-isolation and building-connection.

    Science.gov (United States)

    Kasagi, M; Fujita, K; Tsuji, M; Takewaki, I

    2016-02-01

    A base-isolated building may sometimes exhibit an undesirable large response to a long-duration, long-period earthquake ground motion and a connected building system without base-isolation may show a large response to a near-fault (rather high-frequency) earthquake ground motion. To overcome both deficiencies, a new hybrid control system of base-isolation and building-connection is proposed and investigated. In this new hybrid building system, a base-isolated building is connected to a stiffer free wall with oil dampers. It has been demonstrated in a preliminary research that the proposed hybrid system is effective both for near-fault (rather high-frequency) and long-duration, long-period earthquake ground motions and has sufficient redundancy and robustness for a broad range of earthquake ground motions.An automatic generation algorithm of this kind of smart structures of base-isolation and building-connection hybrid systems is presented in this paper. It is shown that, while the proposed algorithm does not work well in a building without the connecting-damper system, it works well in the proposed smart hybrid system with the connecting damper system.

  14. Automatic generation of smart earthquake-resistant building system: Hybrid system of base-isolation and building-connection

    Directory of Open Access Journals (Sweden)

    M. Kasagi

    2016-02-01

    Full Text Available A base-isolated building may sometimes exhibit an undesirable large response to a long-duration, long-period earthquake ground motion and a connected building system without base-isolation may show a large response to a near-fault (rather high-frequency earthquake ground motion. To overcome both deficiencies, a new hybrid control system of base-isolation and building-connection is proposed and investigated. In this new hybrid building system, a base-isolated building is connected to a stiffer free wall with oil dampers. It has been demonstrated in a preliminary research that the proposed hybrid system is effective both for near-fault (rather high-frequency and long-duration, long-period earthquake ground motions and has sufficient redundancy and robustness for a broad range of earthquake ground motions.An automatic generation algorithm of this kind of smart structures of base-isolation and building-connection hybrid systems is presented in this paper. It is shown that, while the proposed algorithm does not work well in a building without the connecting-damper system, it works well in the proposed smart hybrid system with the connecting damper system.

  15. Design and analysis of differential evolution algorithm based automatic generation control for interconnected power system

    Directory of Open Access Journals (Sweden)

    Umesh Kumar Rout

    2013-09-01

    Full Text Available This paper presents the design and performance analysis of Differential Evolution (DE algorithm based Proportional-Integral (PI controller for Automatic Generation Control (AGC of an interconnected power system. A two area non-reheat thermal system equipped with PI controllers which is widely used in literature is considered for the design and analysis purpose. The design problem is formulated as an optimization problem control and DE is employed to search for optimal controller parameters. Three different objective functions using Integral Time multiply Absolute Error (ITAE, damping ratio of dominant eigenvalues and settling time with appropriate weight coefficients are derived in order to increase the performance of the controller. The superiority of the proposed DE optimized PI controller has been shown by comparing the results with some recently published modern heuristic optimization techniques such as Bacteria Foraging Optimization Algorithm (BFOA and Genetic Algorithm (GA based PI controller for the same interconnected power system.

  16. Automatic differentiation of color fundus images containing drusen or exudates using a contextual spatial pyramid approach.

    Science.gov (United States)

    van Grinsven, Mark J J P; Theelen, Thomas; Witkamp, Leonard; van der Heijden, Job; van de Ven, Johannes P H; Hoyng, Carel B; van Ginneken, Bram; Sánchez, Clara I

    2016-03-01

    We developed an automatic system to identify and differentiate color fundus images containing no lesions, drusen or exudates. Drusen and exudates are lesions with a bright appearance, associated with age-related macular degeneration and diabetic retinopathy, respectively. The system consists of three lesion detectors operating at pixel-level, combining their outputs using spatial pooling and classification with a random forest classifier. System performance was compared with ratings of two independent human observers using human-expert annotations as reference. Kappa agreements of 0.89, 0.97 and 0.92 and accuracies of 0.93, 0.98 and 0.95 were obtained for the system and observers, respectively.

  17. Using automatic differentiation with the quasi-procedural method for multidisciplinary design optimaization

    Energy Technology Data Exchange (ETDEWEB)

    Altus, S.; Kroo, I. [Department of Aeronautics and Astronautics, Stanford Univ., Stanford, CA (United States); Bischof, C.; Hovland, P. [Mathematics and Computer Science Division, Argonne National Lab., Argonne, IL (United States)

    1996-02-01

    As computers have become increasingly powerful, the field of design optimization has moved toward higher fidelity models (involving many more variables) in the early stages of design. One way in which this movement has manifested itself is in the increasing popularity of multidisciplinary design optimization (MDO). Because the models used in MDO are large and very complicated, a modular design is desirable. Because there are many- design parameters to optimize, derivatives must be computed accurately and efficiently. This paper describes how the quasi-procedural program architecture developed by Takai and Kroo [9] and the technique of automatic differentiation [6] can be combined to effectively address these needs. The two techniques are explained, the manner in which they were integrated into a single framework is described, and the result of using this framework for an optimization problem in airplane design is presented.

  18. Uncertainty Calculation of Roundness Assessment by Automatic Differentiation in Coordinate Metrology

    Institute of Scientific and Technical Information of China (English)

    Jia-chun LIN; Michael Krystek; Zhao-yao SHI

    2010-01-01

    Recently, Coordinate Measuring Machines (CMMs) are widely used to measure roundness errors. Roundness is calculated from a large number of points collected from the profiles of the parts. According to the Guide to the Expression of Uncertainty in Measurement (GUM), all measurement results must have a stated uncertainty associated the them. However, no CMMs give the uncertainty value of the roundness, because no suitable measurement uncertainty calculation procedure exists. In the case of roundness measurement in coordinate metrology, this paper suggests the algorithms for the calculation of the measurement uncertainty of the roundness deviation based on the two mainly used association criteria, LSC and MZC. The calculation of the sensitivity coefficients for the uncertainty calculation can be done by automatic differentiation, in order to avoid introducing additional errors by the traditional difference quotient approximations. The proposed methods are exact and need input data only as the measured coordinates of the data points and their associated uncertainties.

  19. A hybrid semi-automatic method for liver segmentation based on level-set methods using multiple seed points.

    Science.gov (United States)

    Yang, Xiaopeng; Yu, Hee Chul; Choi, Younggeun; Lee, Wonsup; Wang, Baojian; Yang, Jaedo; Hwang, Hongpil; Kim, Ji Hyun; Song, Jisoo; Cho, Baik Hwan; You, Heecheon

    2014-01-01

    The present study developed a hybrid semi-automatic method to extract the liver from abdominal computerized tomography (CT) images. The proposed hybrid method consists of a customized fast-marching level-set method for detection of an optimal initial liver region from multiple seed points selected by the user and a threshold-based level-set method for extraction of the actual liver region based on the initial liver region. The performance of the hybrid method was compared with those of the 2D region growing method implemented in OsiriX using abdominal CT datasets of 15 patients. The hybrid method showed a significantly higher accuracy in liver extraction (similarity index, SI=97.6 ± 0.5%; false positive error, FPE = 2.2 ± 0.7%; false negative error, FNE=2.5 ± 0.8%; average symmetric surface distance, ASD=1.4 ± 0.5mm) than the 2D (SI=94.0 ± 1.9%; FPE = 5.3 ± 1.1%; FNE=6.5 ± 3.7%; ASD=6.7 ± 3.8mm) region growing method. The total liver extraction time per CT dataset of the hybrid method (77 ± 10 s) is significantly less than the 2D region growing method (575 ± 136 s). The interaction time per CT dataset between the user and a computer of the hybrid method (28 ± 4 s) is significantly shorter than the 2D region growing method (484 ± 126 s). The proposed hybrid method was found preferred for liver segmentation in preoperative virtual liver surgery planning.

  20. TaylUR, an arbitrary-order diagonal automatic differentiation package for Fortran 95

    Science.gov (United States)

    von Hippel, G. M.

    2006-04-01

    We present TaylUR, a Fortran 95 module to automatically compute the numerical values of a complex-valued function's derivatives with respect to several variables up to an arbitrary order in each variable, but excluding mixed derivatives. Arithmetic operators and Fortran intrinsics are overloaded to act correctly on objects of a defined type taylor, which encodes a function along with its first few derivatives with respect to the user-defined independent variables. Derivatives of products and composite functions are computed using Leibniz's rule and Faà di Bruno's formula. TaylUR makes heavy use of operator overloading and other Fortran 95 features such as elemental functions. Program summaryProgram title: TaylUR Catalogue identifier:ADXR_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/ADXR_v1_0 Program obtainable from: CPC Program Library, Queen's University of Belfast, N. Ireland Licensing provisions:none Programming language:Fortran 95 Computer:Any computer with a conforming Fortran 95 compiler Operating system:Any system with a conforming Fortran 95 compiler No. of lines in distributed program, including test data, etc.:6286 No. of bytes in distributed program, including test data, etc:14 994 Distribution format:tar.gz Nature of problem:Problems that require potentially high orders of derivatives with respect to some variables, such as e.g. expansions of Feynman diagrams in particle masses in perturbative Quantum Field Theory, and which cannot be treated using existing Fortran modules for automatic differentiation [C.W. Straka, ADF95: Tool for automatic differentiation of a FORTRAN code designed for large numbers of independent variables, Comput. Phys. Comm. 168 (2005) 123-139, arXiv:cs.MS/0503014; S. Stamatiadis, R. Prosmiti, S.C. Farantos, AUTO_DERIV: Tool for automatic differentiation of a FORTRAN code, Comput. Phys. Comm. 127 (2000) 343-355]. Solution method:Arithmetic operators and Fortran intrinsics are overloaded to act correctly on objects of

  1. An evolutionary computation based algorithm for calculating solar differential rotation by automatic tracking of coronal bright points

    Directory of Open Access Journals (Sweden)

    Shahamatnia Ehsan

    2016-01-01

    Full Text Available Developing specialized software tools is essential to support studies of solar activity evolution. With new space missions such as Solar Dynamics Observatory (SDO, solar images are being produced in unprecedented volumes. To capitalize on that huge data availability, the scientific community needs a new generation of software tools for automatic and efficient data processing. In this paper a prototype of a modular framework for solar feature detection, characterization, and tracking is presented. To develop an efficient system capable of automatic solar feature tracking and measuring, a hybrid approach combining specialized image processing, evolutionary optimization, and soft computing algorithms is being followed. The specialized hybrid algorithm for tracking solar features allows automatic feature tracking while gathering characterization details about the tracked features. The hybrid algorithm takes advantages of the snake model, a specialized image processing algorithm widely used in applications such as boundary delineation, image segmentation, and object tracking. Further, it exploits the flexibility and efficiency of Particle Swarm Optimization (PSO, a stochastic population based optimization algorithm. PSO has been used successfully in a wide range of applications including combinatorial optimization, control, clustering, robotics, scheduling, and image processing and video analysis applications. The proposed tool, denoted PSO-Snake model, was already successfully tested in other works for tracking sunspots and coronal bright points. In this work, we discuss the application of the PSO-Snake algorithm for calculating the sidereal rotational angular velocity of the solar corona. To validate the results we compare them with published manual results performed by an expert.

  2. Automatic differentiation evaluated as a tool for rotorcraft design and optimization

    Science.gov (United States)

    Walsh, Joanne L.; Young, Katherine C.

    1995-01-01

    This paper investigates the use of automatic differentiation (AD) as a means for generating sensitivity analyses in rotorcraft design and optimization. This technique transforms an existing computer program into a new program that performs sensitivity analysis in addition to the original analysis. The original FORTRAN program calculates a set of dependent (output) variables from a set of independent (input) variables, the new FORTRAN program calculates the partial derivatives of the dependent variables with respect to the independent variables. The AD technique is a systematic implementation of the chain rule of differentiation, this method produces derivatives to machine accuracy at a cost that is comparable with that of finite-differencing methods. For this study, an analysis code that consists of the Langley-developed hover analysis HOVT, the comprehensive rotor analysis CAMRAD/JA, and associated preprocessors is processed through the AD preprocessor ADIFOR 2.0. The resulting derivatives are compared with derivatives obtained from finite-differencing techniques. The derivatives obtained with ADIFOR 2.0 are exact within machine accuracy and do not depend on the selection of step-size, as are the derivatives obtained with finite-differencing techniques.

  3. Differential automatic diagnosis between Alzheimer's disease and frontotemporal dementia based on perfusion SPECT images.

    Science.gov (United States)

    Horn, Jean-François; Habert, Marie-Odile; Kas, Aurélie; Malek, Zoulikha; Maksud, Philippe; Lacomblez, Lucette; Giron, Alain; Fertil, Bernard

    2009-10-01

    Alzheimer's disease (AD) and frontotemporal dementia (FTD) are among the most frequent neurodegenerative cognitive disorders, but their differential diagnosis is difficult. The aim of this study was to evaluate an automatic method returning the probability that a patient suffers from AD or FTD from the analysis of brain perfusion single photon emission computed tomography images. A set of 116 descriptors corresponding to the average activity in regions of interest was calculated from the images of 82 AD and 91 FTD patients. A set of linear (logistic regression and linear discriminant analysis) and non-linear (support vector machines, k-nearest neighbours, multilayer perceptron and kernel logistic PLS) classification methods was subsequently used to ascertain diagnoses. Validation was carried out by means of the leave-one-out protocol. Diagnoses by the classifier and by four physicians (visual assessment) were compared. Since images were acquired in different hospitals, the impact of the medical centre on the diagnosis of both the classifier and the physicians was investigated. Best results were obtained with support vector machine and partial least squares regression coupled with k-nearest neighbours methods (PLS+K-NN), with an overall accuracy of 88%. PLS+K-NN was however considered as the best method since performances obtained with leave-one-out cross-validation were closer to whole-database learning. The performances of the classifier were higher than those of experts (accuracy ranged from 65 to 72%). Physicians found it more difficult to diagnose the images from centres other than their own, and it affected their performances. The performances obtained by the classifier for the differential diagnosis of AD and FTD were found convincing. It could help physicians in daily practice, particularly when visual assessment is inconclusive, or when dealing with multicentre data.

  4. Differential evolution algorithm based automatic generation control for interconnected power systems with

    Directory of Open Access Journals (Sweden)

    Banaja Mohanty

    2014-09-01

    Full Text Available This paper presents the design and performance analysis of Differential Evolution (DE algorithm based Proportional–Integral (PI and Proportional–Integral–Derivative (PID controllers for Automatic Generation Control (AGC of an interconnected power system. Initially, a two area thermal system with governor dead-band nonlinearity is considered for the design and analysis purpose. In the proposed approach, the design problem is formulated as an optimization problem control and DE is employed to search for optimal controller parameters. Three different objective functions are used for the design purpose. The superiority of the proposed approach has been shown by comparing the results with a recently published Craziness based Particle Swarm Optimization (CPSO technique for the same interconnected power system. It is noticed that, the dynamic performance of DE optimized PI controller is better than CPSO optimized PI controllers. Additionally, controller parameters are tuned at different loading conditions so that an adaptive gain scheduling control strategy can be employed. The study is further extended to a more realistic network of two-area six unit system with different power generating units such as thermal, hydro, wind and diesel generating units considering boiler dynamics for thermal plants, Generation Rate Constraint (GRC and Governor Dead Band (GDB non-linearity.

  5. Multi-Objective Differential Evolution for Automatic Clustering with Application to Micro-Array Data Analysis

    Directory of Open Access Journals (Sweden)

    Sang Yong Han

    2009-05-01

    Full Text Available This paper applies the Differential Evolution (DE algorithm to the task of automatic fuzzy clustering in a Multi-objective Optimization (MO framework. It compares the performances of two multi-objective variants of DE over the fuzzy clustering problem, where two conflicting fuzzy validity indices are simultaneously optimized. The resultant Pareto optimal set of solutions from each algorithm consists of a number of non-dominated solutions, from which the user can choose the most promising ones according to the problem specifications. A real-coded representation of the search variables, accommodating variable number of cluster centers, is used for DE. The performances of the multi-objective DE-variants have also been contrasted to that of two most well-known schemes of MO clustering, namely the Non Dominated Sorting Genetic Algorithm (NSGA II and Multi-Objective Clustering with an unknown number of Clusters K (MOCK. Experimental results using six artificial and four real life datasets of varying range of complexities indicate that DE holds immense promise as a candidate algorithm for devising MO clustering schemes.

  6. Multi-objective differential evolution for automatic clustering with application to micro-array data analysis.

    Science.gov (United States)

    Suresh, Kaushik; Kundu, Debarati; Ghosh, Sayan; Das, Swagatam; Abraham, Ajith; Han, Sang Yong

    2009-01-01

    This paper applies the Differential Evolution (DE) algorithm to the task of automatic fuzzy clustering in a Multi-objective Optimization (MO) framework. It compares the performances of two multi-objective variants of DE over the fuzzy clustering problem, where two conflicting fuzzy validity indices are simultaneously optimized. The resultant Pareto optimal set of solutions from each algorithm consists of a number of non-dominated solutions, from which the user can choose the most promising ones according to the problem specifications. A real-coded representation of the search variables, accommodating variable number of cluster centers, is used for DE. The performances of the multi-objective DE-variants have also been contrasted to that of two most well-known schemes of MO clustering, namely the Non Dominated Sorting Genetic Algorithm (NSGA II) and Multi-Objective Clustering with an unknown number of Clusters K (MOCK). Experimental results using six artificial and four real life datasets of varying range of complexities indicate that DE holds immense promise as a candidate algorithm for devising MO clustering schemes.

  7. Lyapunov’s type inequalities for hybrid fractional differential equations

    Directory of Open Access Journals (Sweden)

    Surang Sitho

    2016-07-01

    Full Text Available Abstract We investigate new results about Lyapunov-type inequalities by considering hybrid fractional boundary value problems. We give necessary conditions for the existence of nontrivial solutions for a class of hybrid boundary value problems involving Riemann-Liouville fractional derivative of order 2 < α ≤ 3 $2<\\alpha\\le3$ . The investigation is based on a construction of Green’s functions and on finding its corresponding maximum value. In order to illustrate the results, we provide numerical examples.

  8. ACCELERATING FUSION REACTOR NEUTRONICS MODELING BY AUTOMATIC COUPLING OF HYBRID MONTE CARLO/DETERMINISTIC TRANSPORT ON CAD GEOMETRY

    Energy Technology Data Exchange (ETDEWEB)

    Biondo, Elliott D [ORNL; Ibrahim, Ahmad M [ORNL; Mosher, Scott W [ORNL; Grove, Robert E [ORNL

    2015-01-01

    Detailed radiation transport calculations are necessary for many aspects of the design of fusion energy systems (FES) such as ensuring occupational safety, assessing the activation of system components for waste disposal, and maintaining cryogenic temperatures within superconducting magnets. Hybrid Monte Carlo (MC)/deterministic techniques are necessary for this analysis because FES are large, heavily shielded, and contain streaming paths that can only be resolved with MC. The tremendous complexity of FES necessitates the use of CAD geometry for design and analysis. Previous ITER analysis has required the translation of CAD geometry to MCNP5 form in order to use the AutomateD VAriaNce reducTion Generator (ADVANTG) for hybrid MC/deterministic transport. In this work, ADVANTG was modified to support CAD geometry, allowing hybrid (MC)/deterministic transport to be done automatically and eliminating the need for this translation step. This was done by adding a new ray tracing routine to ADVANTG for CAD geometries using the Direct Accelerated Geometry Monte Carlo (DAGMC) software library. This new capability is demonstrated with a prompt dose rate calculation for an ITER computational benchmark problem using both the Consistent Adjoint Driven Importance Sampling (CADIS) method an the Forward Weighted (FW)-CADIS method. The variance reduction parameters produced by ADVANTG are shown to be the same using CAD geometry and standard MCNP5 geometry. Significant speedups were observed for both neutrons (as high as a factor of 7.1) and photons (as high as a factor of 59.6).

  9. DAF: differential ACE filtering image quality assessment by automatic color equalization

    Science.gov (United States)

    Ouni, S.; Chambah, M.; Saint-Jean, C.; Rizzi, A.

    2008-01-01

    Ideally, a quality assessment system would perceive and measure image or video impairments just like a human being. But in reality, objective quality metrics do not necessarily correlate well with perceived quality [1]. Plus, some measures assume that there exists a reference in the form of an "original" to compare to, which prevents their usage in digital restoration field, where often there is no reference to compare to. That is why subjective evaluation is the most used and most efficient approach up to now. But subjective assessment is expensive, time consuming and does not respond, hence, to the economic requirements [2,3]. Thus, reliable automatic methods for visual quality assessment are needed in the field of digital film restoration. The ACE method, for Automatic Color Equalization [4,6], is an algorithm for digital images unsupervised enhancement. It is based on a new computational approach that tries to model the perceptual response of our vision system merging the Gray World and White Patch equalization mechanisms in a global and local way. Like our vision system ACE is able to adapt to widely varying lighting conditions, and to extract visual information from the environment efficaciously. Moreover ACE can be run in an unsupervised manner. Hence it is very useful as a digital film restoration tool since no a priori information is available. In this paper we deepen the investigation of using the ACE algorithm as a basis for a reference free image quality evaluation. This new metric called DAF for Differential ACE Filtering [7] is an objective quality measure that can be used in several image restoration and image quality assessment systems. In this paper, we compare on different image databases, the results obtained with DAF and with some subjective image quality assessments (Mean Opinion Score MOS as measure of perceived image quality). We study also the correlation between objective measure and MOS. In our experiments, we have used for the first image

  10. Genes of both parental origins are differentially involved in early embryogenesis of a tobacco interspecies hybrid.

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    Jun-E Zhang

    Full Text Available BACKGROUND: In animals, early embryonic development is largely dependent on maternal transcripts synthesized during gametogenesis. However, in higher plants, the extent of maternal control over zygote development and early embryogenesis is not fully understood yet. Nothing is known about the activity of the parental genomes during seed formation of interspecies hybrids. METHODOLOGY/PRINCIPAL FINDINGS: Here, we report that an interspecies hybridization system between SR1 (Nicotiana tabacum and Hamayan (N. rustica has been successfully established. Based on the system we selected 58 genes that have polymorphic sites between SR1 and Hamayan, and analyzed the allele-specific expression of 28 genes in their hybrid zygotes (Hamayan x SR1. Finally the allele-specific expressions of 8 genes in hybrid zygotes were repeatedly confirmed. Among them, 4 genes were of paternal origin, 1 gene was of maternal origin and 3 genes were of biparental origin. These results revealed obvious biparental involvement and differentially contribution of parental-origin genes to zygote development in the interspecies hybrid. We further detected the expression pattern of the genes at 8-celled embryo stage found that the involvement of the parental-origin genes may change at different stages of embryogenesis. CONCLUSIONS/SIGNIFICANCE: We reveal that genes of both parental origins are differentially involved in early embryogenesis of a tobacco interspecies hybrid and functions in a developmental stage-dependent manner. This finding may open a window to seek for the possible molecular mechanism of hybrid vigor.

  11. Solution Approach to Automatic Generation Control Problem Using Hybridized Gravitational Search Algorithm Optimized PID and FOPID Controllers

    Directory of Open Access Journals (Sweden)

    DAHIYA, P.

    2015-05-01

    Full Text Available This paper presents the application of hybrid opposition based disruption operator in gravitational search algorithm (DOGSA to solve automatic generation control (AGC problem of four area hydro-thermal-gas interconnected power system. The proposed DOGSA approach combines the advantages of opposition based learning which enhances the speed of convergence and disruption operator which has the ability to further explore and exploit the search space of standard gravitational search algorithm (GSA. The addition of these two concepts to GSA increases its flexibility for solving the complex optimization problems. This paper addresses the design and performance analysis of DOGSA based proportional integral derivative (PID and fractional order proportional integral derivative (FOPID controllers for automatic generation control problem. The proposed approaches are demonstrated by comparing the results with the standard GSA, opposition learning based GSA (OGSA and disruption based GSA (DGSA. The sensitivity analysis is also carried out to study the robustness of DOGSA tuned controllers in order to accommodate variations in operating load conditions, tie-line synchronizing coefficient, time constants of governor and turbine. Further, the approaches are extended to a more realistic power system model by considering the physical constraints such as thermal turbine generation rate constraint, speed governor dead band and time delay.

  12. Heterogeneous genome divergence, differential introgression, and the origin and structure of hybrid zones.

    Science.gov (United States)

    Harrison, Richard G; Larson, Erica L

    2016-06-01

    Hybrid zones have been promoted as windows on the evolutionary process and as laboratories for studying divergence and speciation. Patterns of divergence between hybridizing species can now be characterized on a genomewide scale, and recent genome scans have focused on the presence of 'islands' of divergence. Patterns of heterogeneous genomic divergence may reflect differential introgression following secondary contact and provide insights into which genome regions contribute to local adaptation, hybrid unfitness and positive assortative mating. However, heterogeneous genome divergence can also arise in the absence of any gene flow, as a result of variation in selection and recombination across the genome. We suggest that to understand hybrid zone origins and dynamics, it is essential to distinguish between genome regions that are divergent between pure parental populations and regions that show restricted introgression where these populations interact in hybrid zones. The latter, more so than the former, reveal the likely genetic architecture of reproductive isolation. Mosaic hybrid zones, because of their complex structure and multiple contacts, are particularly good subjects for distinguishing primary intergradation from secondary contact. Comparisons among independent hybrid zones or transects that involve the 'same' species pair can also help to distinguish between divergence with gene flow and secondary contact. However, data from replicate hybrid zones or replicate transects do not reveal consistent patterns; in a few cases, patterns of introgression are similar across independent transects, but for many taxa, there is distinct lack of concordance, presumably due to variation in environmental context and/or variation in the genetics of the interacting populations.

  13. Extracting Noun Phrases from Large-Scale Texts A Hybrid Approach and Its Automatic Evaluation

    CERN Document Server

    Chen, K; Chen, Kuang-hua; Chen, Hsin-Hsi

    1994-01-01

    To acquire noun phrases from running texts is useful for many applications, such as word grouping,terminology indexing, etc. The reported literatures adopt pure probabilistic approach, or pure rule-based noun phrases grammar to tackle this problem. In this paper, we apply a probabilistic chunker to deciding the implicit boundaries of constituents and utilize the linguistic knowledge to extract the noun phrases by a finite state mechanism. The test texts are SUSANNE Corpus and the results are evaluated by comparing the parse field of SUSANNE Corpus automatically. The results of this preliminary experiment are encouraging.

  14. Genome differentiation in Magonoliaceae as revealed from meiotic pairing in interspecific and intergeneric hybrids

    Institute of Scientific and Technical Information of China (English)

    Shou-Zhou ZHANG; Ya-Ling WANG; Zi-Can HE; Erland EJDER

    2011-01-01

    The cross compatibility within and between Yulania Spach and Michelia L.(Magnoliaceae) is relatively good and various such hybrids,obtained by conventional artificial hybridization,are available.The aim of the present study was to determine the extent of genome differentiation between the species involved in these crosses through the observation of chromosome pairing during meiosis in pollen mother cells (PMCs) of the hybrids.Chromosome pairing behavior was studied in five species (2n =38) and two interspecific hybrids of Michelia,eight species (2n =38,76 and 114) and 10 interspecific hybrids of Yulania,and three intergeneric hybrids between Michelia and Yulania.The results showed that chromosome pairing was normal with bivalent formation in diploid parental species and in interspecific hybrids.In addition to bivalents,multivalents were encountered in polyploid parental species and polyploid interspecific hybrids.In the intergeneric hybrids between a tetraploid Yulania and two diploid Michelia,19 chromosomes,most likely originating from Michelia,were unable to synapse from zygotene to metaphase I.Meiotic chromosome pairing indicated a high degree of homology between species within Michelia and Yulania and less homology between the genomes of these two genera.The differentiation of morphological characters and the distinctness of natural distribution also support the conclusion that these two genera are likely independent monophyletic groups.This suggests that the two genera were split at early evolution of Magnoliaceae and the overlapping characteristics in external morphology and internal structures of the two genera may be the result of parallel evolution or ancient common ancestry.

  15. A hybrid particle swarm optimization-SVM classification for automatic cardiac auscultation

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    Prasertsak Charoen

    2017-04-01

    Full Text Available Cardiac auscultation is a method for a doctor to listen to heart sounds, using a stethoscope, for examining the condition of the heart. Automatic cardiac auscultation with machine learning is a promising technique to classify heart conditions without need of doctors or expertise. In this paper, we develop a classification model based on support vector machine (SVM and particle swarm optimization (PSO for an automatic cardiac auscultation system. The model consists of two parts: heart sound signal processing part and a proposed PSO for weighted SVM (WSVM classifier part. In this method, the PSO takes into account the degree of importance for each feature extracted from wavelet packet (WP decomposition. Then, by using principle component analysis (PCA, the features can be selected. The PSO technique is used to assign diverse weights to different features for the WSVM classifier. Experimental results show that both continuous and binary PSO-WSVM models achieve better classification accuracy on the heart sound samples, by reducing system false negatives (FNs, compared to traditional SVM and genetic algorithm (GA based SVM.

  16. Aerodynamic design applying automatic differentiation and using robust variable fidelity optimization

    Science.gov (United States)

    Takemiya, Tetsushi

    , and that (2) the AMF terminates optimization erroneously when the optimization problems have constraints. The first problem is due to inaccuracy in computing derivatives in the AMF, and the second problem is due to erroneous treatment of the trust region ratio, which sets the size of the domain for an optimization in the AMF. In order to solve the first problem of the AMF, automatic differentiation (AD) technique, which reads the codes of analysis models and automatically generates new derivative codes based on some mathematical rules, is applied. If derivatives are computed with the generated derivative code, they are analytical, and the required computational time is independent of the number of design variables, which is very advantageous for realistic aerospace engineering problems. However, if analysis models implement iterative computations such as computational fluid dynamics (CFD), which solves system partial differential equations iteratively, computing derivatives through the AD requires a massive memory size. The author solved this deficiency by modifying the AD approach and developing a more efficient implementation with CFD, and successfully applied the AD to general CFD software. In order to solve the second problem of the AMF, the governing equation of the trust region ratio, which is very strict against the violation of constraints, is modified so that it can accept the violation of constraints within some tolerance. By accepting violations of constraints during the optimization process, the AMF can continue optimization without terminating immaturely and eventually find the true optimum design point. With these modifications, the AMF is referred to as "Robust AMF," and it is applied to airfoil and wing aerodynamic design problems using Euler CFD software. The former problem has 21 design variables, and the latter 64. In both problems, derivatives computed with the proposed AD method are first compared with those computed with the finite

  17. Numerical Investigations on Hybrid Fuzzy Fractional Differential Equations by Improved Fractional Euler Method

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    D. Vivek

    2016-11-01

    Full Text Available In this paper, the improved Euler method is used for solving hybrid fuzzy fractional differential equations (HFFDE of order $q \\in (0, 1 $ under Caputo-type fuzzy fractional derivatives. This method is based on the fractional Euler method and generalized Taylor's formula. The accuracy and efficiency of the proposed method is demonstrated by solving numerical examples.

  18. Existence results for a system of coupled hybrid fractional differential equations.

    Science.gov (United States)

    Ahmad, Bashir; Ntouyas, Sotiris K; Alsaedi, Ahmed

    2014-01-01

    This paper studies the existence of solutions for a system of coupled hybrid fractional differential equations with Dirichlet boundary conditions. We make use of the standard tools of the fixed point theory to establish the main results. The existence and uniqueness result is elaborated with the aid of an example.

  19. Statistical learning makes the hybridization of particle swarm and differential evolution more efficient-A novel hybrid optimizer

    Institute of Scientific and Technical Information of China (English)

    CHEN Jie; XIN Bin; PENG ZhiHong; PAN Feng

    2009-01-01

    This brief paper reports a hybrid algorithm we developed recently to solve the global optimization problems of multimodal functions, by combining the advantages of two powerful population-based metaheuristics-differential evolution (DE) and particle swarm optimization (PSO). In the hybrid denoted by DEPSO, each individual in one generation chooses its evolution method, DE or PSO, in a statistical learning way. The choice depends on the relative success ratio of the two methods in a previous learning period. The proposed DEPSO is compared with its PSO and DE parents, two advanced DE variants one of which is suggested by the originators of DE, two advanced PSO variants one of which is acknowledged as a recent standard by PSO community, and also a previous DEPSO. Benchmark tests demonstrate that the DEPSO is more competent for the global optimization of multimodal functions due to its high optimization quality.

  20. Stimulated myoblast differentiation on graphene oxide-impregnated PLGA-collagen hybrid fibre matrices.

    Science.gov (United States)

    Shin, Yong Cheol; Lee, Jong Ho; Jin, Linhua; Kim, Min Jeong; Kim, Yong-Joo; Hyun, Jung Keun; Jung, Tae-Gon; Hong, Suck Won; Han, Dong-Wook

    2015-03-12

    Electrospinning is a simple and effective method for fabricating micro- and nanofiber matrices. Electrospun fibre matrices have numerous advantages for use as tissue engineering scaffolds, such as high surface area-to-volume ratio, mass production capability and structural similarity to the natural extracellular matrix (ECM). Therefore, electrospun matrices, which are composed of biocompatible polymers and various biomaterials, have been developed as biomimetic scaffolds for the tissue engineering applications. In particular, graphene oxide (GO) has recently been considered as a novel biomaterial for skeletal muscle regeneration because it can promote the growth and differentiation of myoblasts. Therefore, the aim of the present study was to fabricate the hybrid fibre matrices that stimulate myoblasts differentiation for skeletal muscle regeneration. Hybrid fibre matrices composed of poly(lactic-co-glycolic acid, PLGA) and collagen (Col) impregnated with GO (GO-PLGA-Col) were successfully fabricated using an electrospinning process. Our results indicated that the GO-PLGA-Col hybrid matrices were comprised of randomly-oriented continuous fibres with a three-dimensional non-woven porous structure. Compositional analysis showed that GO was dispersed uniformly throughout the GO-PLGA-Col matrices. In addition, the hydrophilicity of the fabricated matrices was significantly increased by blending with a small amount of Col and GO. The attachment and proliferation of the C2C12 skeletal myoblasts were significantly enhanced on the GO-PLGA-Col hybrid matrices. Furthermore, the GO-PLGA-Col matrices stimulated the myogenic differentiation of C2C12 skeletal myoblasts, which was enhanced further under the culture conditions of the differentiation media. Taking our findings into consideration, it is suggested that the GO-PLGA-Col hybrid fibre matrices can be exploited as potential biomimetic scaffolds for skeletal tissue engineering and regeneration because these GO

  1. A hybrid model for automatic identification of risk factors for heart disease.

    Science.gov (United States)

    Yang, Hui; Garibaldi, Jonathan M

    2015-12-01

    Coronary artery disease (CAD) is the leading cause of death in both the UK and worldwide. The detection of related risk factors and tracking their progress over time is of great importance for early prevention and treatment of CAD. This paper describes an information extraction system that was developed to automatically identify risk factors for heart disease in medical records while the authors participated in the 2014 i2b2/UTHealth NLP Challenge. Our approaches rely on several nature language processing (NLP) techniques such as machine learning, rule-based methods, and dictionary-based keyword spotting to cope with complicated clinical contexts inherent in a wide variety of risk factors. Our system achieved encouraging performance on the challenge test data with an overall micro-averaged F-measure of 0.915, which was competitive to the best system (F-measure of 0.927) of this challenge task.

  2. Hybridizing Differential Evolution with a Genetic Algorithm for Color Image Segmentation

    Directory of Open Access Journals (Sweden)

    R. V. V. Krishna

    2016-10-01

    Full Text Available This paper proposes a hybrid of differential evolution and genetic algorithms to solve the color image segmentation problem. Clustering based color image segmentation algorithms segment an image by clustering the features of color and texture, thereby obtaining accurate prototype cluster centers. In the proposed algorithm, the color features are obtained using the homogeneity model. A new texture feature named Power Law Descriptor (PLD which is a modification of Weber Local Descriptor (WLD is proposed and further used as a texture feature for clustering. Genetic algorithms are competent in handling binary variables, while differential evolution on the other hand is more efficient in handling real parameters. The obtained texture feature is binary in nature and the color feature is a real value, which suits very well the hybrid cluster center optimization problem in image segmentation. Thus in the proposed algorithm, the optimum texture feature centers are evolved using genetic algorithms, whereas the optimum color feature centers are evolved using differential evolution.

  3. Automatic artefact removal in a self-paced hybrid brain- computer interface system

    Directory of Open Access Journals (Sweden)

    Yong Xinyi

    2012-07-01

    Full Text Available Abstract Background A novel artefact removal algorithm is proposed for a self-paced hybrid brain-computer interface (BCI system. This hybrid system combines a self-paced BCI with an eye-tracker to operate a virtual keyboard. To select a letter, the user must gaze at the target for at least a specific period of time (dwell time and then activate the BCI by performing a mental task. Unfortunately, electroencephalogram (EEG signals are often contaminated with artefacts. Artefacts change the quality of EEG signals and subsequently degrade the BCI’s performance. Methods To remove artefacts in EEG signals, the proposed algorithm uses the stationary wavelet transform combined with a new adaptive thresholding mechanism. To evaluate the performance of the proposed algorithm and other artefact handling/removal methods, semi-simulated EEG signals (i.e., real EEG signals mixed with simulated artefacts and real EEG signals obtained from seven participants are used. For real EEG signals, the hybrid BCI system’s performance is evaluated in an online-like manner, i.e., using the continuous data from the last session as in a real-time environment. Results With semi-simulated EEG signals, we show that the proposed algorithm achieves lower signal distortion in both time and frequency domains. With real EEG signals, we demonstrate that for dwell time of 0.0s, the number of false-positives/minute is 2 and the true positive rate (TPR achieved by the proposed algorithm is 44.7%, which is more than 15.0% higher compared to other state-of-the-art artefact handling methods. As dwell time increases to 1.0s, the TPR increases to 73.1%. Conclusions The proposed artefact removal algorithm greatly improves the BCI’s performance. It also has the following advantages: a it does not require additional electrooculogram/electromyogram channels, long data segments or a large number of EEG channels, b it allows real-time processing, and c it reduces signal distortion.

  4. Two Hybrid Methods for Solving Two-Dimensional Linear Time-Fractional Partial Differential Equations

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    B. A. Jacobs

    2014-01-01

    Full Text Available A computationally efficient hybridization of the Laplace transform with two spatial discretization techniques is investigated for numerical solutions of time-fractional linear partial differential equations in two space variables. The Chebyshev collocation method is compared with the standard finite difference spatial discretization and the absolute error is obtained for several test problems. Accurate numerical solutions are achieved in the Chebyshev collocation method subject to both Dirichlet and Neumann boundary conditions. The solution obtained by these hybrid methods allows for the evaluation at any point in time without the need for time-marching to a particular point in time.

  5. An Accurate Block Hybrid Collocation Method for Third Order Ordinary Differential Equations

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    Lee Ken Yap

    2014-01-01

    Full Text Available The block hybrid collocation method with two off-step points is proposed for the direct solution of general third order ordinary differential equations. Both the main and additional methods are derived via interpolation and collocation of the basic polynomial. These methods are applied in block form to provide the approximation at five points concurrently. The stability properties of the block method are investigated. Some numerical examples are tested to illustrate the efficiency of the method. The block hybrid collocation method is also implemented to solve the nonlinear Genesio equation and the problem in thin film flow.

  6. AUTO_DERIV: Tool for automatic differentiation of a Fortran code

    Science.gov (United States)

    Stamatiadis, S.; Farantos, S. C.

    2010-10-01

    AUTO_DERIV is a module comprised of a set of FORTRAN 95 procedures which can be used to calculate the first and second partial derivatives (mixed or not) of any continuous function with many independent variables. The mathematical function should be expressed as one or more FORTRAN 77/90/95 procedures. A new type of variables is defined and the overloading mechanism of functions and operators provided by the FORTRAN 95 language is extensively used to define the differentiation rules. Proper (standard complying) handling of floating-point exceptions is provided by using the IEEE_EXCEPTIONS intrinsic module (Technical Report 15580, incorporated in FORTRAN 2003). New version program summaryProgram title: AUTO_DERIV Catalogue identifier: ADLS_v2_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/ADLS_v2_0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: Standard CPC licence, http://cpc.cs.qub.ac.uk/licence/licence.html No. of lines in distributed program, including test data, etc.: 2963 No. of bytes in distributed program, including test data, etc.: 10 314 Distribution format: tar.gz Programming language: Fortran 95 + (optionally) TR-15580 (Floating-point exception handling) Computer: all platforms with a Fortran 95 compiler Operating system: Linux, Windows, MacOS Classification: 4.12, 6.2 Catalogue identifier of previous version: ADLS_v1_0 Journal reference of previous version: Comput. Phys. Comm. 127 (2000) 343 Does the new version supersede the previous version?: Yes Nature of problem: The need to calculate accurate derivatives of a multivariate function frequently arises in computational physics and chemistry. The most versatile approach to evaluate them by a computer, automatically and to machine precision, is via user-defined types and operator overloading. AUTO_DERIV is a Fortran 95 implementation of them, designed to evaluate the first and second derivatives of a function of many variables

  7. Hybridization of Adaptive Differential Evolution with an Expensive Local Search Method

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    Rashida Adeeb Khanum

    2016-01-01

    Full Text Available Differential evolution (DE is an effective and efficient heuristic for global optimization problems. However, it faces difficulty in exploiting the local region around the approximate solution. To handle this issue, local search (LS techniques could be hybridized with DE to improve its local search capability. In this work, we hybridize an updated version of DE, adaptive differential evolution with optional external archive (JADE with an expensive LS method, Broydon-Fletcher-Goldfarb-Shano (BFGS for solving continuous unconstrained global optimization problems. The new hybrid algorithm is denoted by DEELS. To validate the performance of DEELS, we carried out extensive experiments on well known test problems suits, CEC2005 and CEC2010. The experimental results, in terms of function error values, success rate, and some other statistics, are compared with some of the state-of-the-art algorithms, self-adaptive control parameters in differential evolution (jDE, sequential DE enhanced by neighborhood search for large-scale global optimization (SDENS, and differential ant-stigmergy algorithm (DASA. These comparisons reveal that DEELS outperforms jDE and SDENS except DASA on the majority of test instances.

  8. Second generation hybrid polar compounds are potent inducers of transformed cell differentiation.

    Science.gov (United States)

    Richon, V M; Webb, Y; Merger, R; Sheppard, T; Jursic, B; Ngo, L; Civoli, F; Breslow, R; Rifkind, R A; Marks, P A

    1996-06-11

    Hybrid polar compounds, of which hexamethylenebisacetamide (HMBA) is the prototype, are potent inducers of differentiation of murine erythroleukemia (MEL) cells and a wide variety of other transformed cells. HMBA has been shown to induce differentiation of neoplastic cells in patients, but is not an adequate therapeutic agent because of dose-limiting toxicity. We report on a group of three potent second generation hybrid polar compounds, diethyl bis-(pentamethylene-N,N-dimethylcarboxamide) malonate (EMBA), suberoylanilide hydroxamic acid (SAHA), and m-carboxycinnamic acid bis-hydroxamide (CBHA) with optimal concentrations for inducing MEL cells of 0.4 mM, 2 microM, and 4 microM, respectively, compared to 5 mM for HMBA. All three agents induce accumulation of underphosphorylated pRB; increased levels of p2l protein, a prolongation of the initial G1 phase of the cell cycle; and accumulation of hemoglobin. However, based upon their effective concentrations, the cross-resistance or sensitivity of an HMBA-resistant MEL cell variant, and differences in c-myb expression during induction, these differentiation-inducing hybrid polar compounds can be grouped into two subsets, HMBA/EMBA and SAHA/CBHA. This classification may prove of value in selecting and planning prospective preclinical and clinical studies toward the treatment of cancer by differentiation therapy.

  9. Hybrid EEG—Eye Tracker: Automatic Identification and Removal of Eye Movement and Blink Artifacts from Electroencephalographic Signal

    Directory of Open Access Journals (Sweden)

    Malik M. Naeem Mannan

    2016-02-01

    Full Text Available Contamination of eye movement and blink artifacts in Electroencephalogram (EEG recording makes the analysis of EEG data more difficult and could result in mislead findings. Efficient removal of these artifacts from EEG data is an essential step in improving classification accuracy to develop the brain-computer interface (BCI. In this paper, we proposed an automatic framework based on independent component analysis (ICA and system identification to identify and remove ocular artifacts from EEG data by using hybrid EEG and eye tracker system. The performance of the proposed algorithm is illustrated using experimental and standard EEG datasets. The proposed algorithm not only removes the ocular artifacts from artifactual zone but also preserves the neuronal activity related EEG signals in non-artifactual zone. The comparison with the two state-of-the-art techniques namely ADJUST based ICA and REGICA reveals the significant improved performance of the proposed algorithm for removing eye movement and blink artifacts from EEG data. Additionally, results demonstrate that the proposed algorithm can achieve lower relative error and higher mutual information values between corrected EEG and artifact-free EEG data.

  10. Hybrid EEG--Eye Tracker: Automatic Identification and Removal of Eye Movement and Blink Artifacts from Electroencephalographic Signal.

    Science.gov (United States)

    Mannan, Malik M Naeem; Kim, Shinjung; Jeong, Myung Yung; Kamran, M Ahmad

    2016-02-19

    Contamination of eye movement and blink artifacts in Electroencephalogram (EEG) recording makes the analysis of EEG data more difficult and could result in mislead findings. Efficient removal of these artifacts from EEG data is an essential step in improving classification accuracy to develop the brain-computer interface (BCI). In this paper, we proposed an automatic framework based on independent component analysis (ICA) and system identification to identify and remove ocular artifacts from EEG data by using hybrid EEG and eye tracker system. The performance of the proposed algorithm is illustrated using experimental and standard EEG datasets. The proposed algorithm not only removes the ocular artifacts from artifactual zone but also preserves the neuronal activity related EEG signals in non-artifactual zone. The comparison with the two state-of-the-art techniques namely ADJUST based ICA and REGICA reveals the significant improved performance of the proposed algorithm for removing eye movement and blink artifacts from EEG data. Additionally, results demonstrate that the proposed algorithm can achieve lower relative error and higher mutual information values between corrected EEG and artifact-free EEG data.

  11. Hybrid three-dimensional and support vector machine approach for automatic vehicle tracking and classification using a single camera

    Science.gov (United States)

    Kachach, Redouane; Cañas, José María

    2016-05-01

    Using video in traffic monitoring is one of the most active research domains in the computer vision community. TrafficMonitor, a system that employs a hybrid approach for automatic vehicle tracking and classification on highways using a simple stationary calibrated camera, is presented. The proposed system consists of three modules: vehicle detection, vehicle tracking, and vehicle classification. Moving vehicles are detected by an enhanced Gaussian mixture model background estimation algorithm. The design includes a technique to resolve the occlusion problem by using a combination of two-dimensional proximity tracking algorithm and the Kanade-Lucas-Tomasi feature tracking algorithm. The last module classifies the shapes identified into five vehicle categories: motorcycle, car, van, bus, and truck by using three-dimensional templates and an algorithm based on histogram of oriented gradients and the support vector machine classifier. Several experiments have been performed using both real and simulated traffic in order to validate the system. The experiments were conducted on GRAM-RTM dataset and a proper real video dataset which is made publicly available as part of this work.

  12. Solving the Telegraph and Oscillatory Differential Equations by a Block Hybrid Trigonometrically Fitted Algorithm

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    F. F. Ngwane

    2015-01-01

    Full Text Available We propose a block hybrid trigonometrically fitted (BHT method, whose coefficients are functions of the frequency and the step-size for directly solving general second-order initial value problems (IVPs, including systems arising from the semidiscretization of hyperbolic Partial Differential Equations (PDEs, such as the Telegraph equation. The BHT is formulated from eight discrete hybrid formulas which are provided by a continuous two-step hybrid trigonometrically fitted method with two off-grid points. The BHT is implemented in a block-by-block fashion; in this way, the method does not suffer from the disadvantages of requiring starting values and predictors which are inherent in predictor-corrector methods. The stability property of the BHT is discussed and the performance of the method is demonstrated on some numerical examples to show accuracy and efficiency advantages.

  13. Identification of Differentially Expressed Genes During Ethylene Climacteric of Melon Fruit by Suppression Subtractive Hybridization

    Institute of Scientific and Technical Information of China (English)

    GAO Feng; NIU Yi-ding; HAO Jin-feng; BADE Rengui; ZHANG Li-quan; HASI Agula

    2013-01-01

    Melon (Cucumis melo L.) is an important horticultural crop worldwide. Ethylene regulates the ripening process and affects the ripening rate. To screen genes that are differentially expressed at the burst of ethylene climacteric in melon fruit, we performed suppression subtractive hybridization (SSH) to generate forward and reverse libraries, for which we sequenced 439 and 445 clones, respectively. Our BLAST analysis showed that the genes from the 2 libraries were involved in metabolism, signal transduction, cell structure, transcription, translation, and defense. Six genes were analyzed by qRT-PCR during the differential developmental stage of melon fruit. Our results provide new insight into the understanding of climacteric ripening of melon fruit.

  14. A Hybrid Natural Transform Homotopy Perturbation Method for Solving Fractional Partial Differential Equations

    Directory of Open Access Journals (Sweden)

    Shehu Maitama

    2016-01-01

    Full Text Available A hybrid analytical method for solving linear and nonlinear fractional partial differential equations is presented. The proposed analytical approach is an elegant combination of the Natural Transform Method (NTM and a well-known method, Homotopy Perturbation Method (HPM. In this analytical method, the fractional derivative is computed in Caputo sense and the nonlinear term is calculated using He’s polynomial. The proposed analytical method reduces the computational size and avoids round-off errors. Exact solution of linear and nonlinear fractional partial differential equations is successfully obtained using the analytical method.

  15. A hybrid differential evolution algorithm to vehicle routing problem with fuzzy demands

    Science.gov (United States)

    Erbao, Cao; Mingyong, Lai

    2009-09-01

    In this paper, the vehicle routing problem with fuzzy demands (VRPFD) is considered, and a fuzzy chance constrained program model is designed, based on fuzzy credibility theory. Then stochastic simulation and differential evolution algorithm are integrated to design a hybrid intelligent algorithm to solve the fuzzy chance constrained program model. Moreover, the influence of the dispatcher preference index on the final objective of the problem is discussed using stochastic simulation, and the best value of the dispatcher preference index is obtained.

  16. Block Hybrid Collocation Method with Application to Fourth Order Differential Equations

    Directory of Open Access Journals (Sweden)

    Lee Ken Yap

    2015-01-01

    Full Text Available The block hybrid collocation method with three off-step points is proposed for the direct solution of fourth order ordinary differential equations. The interpolation and collocation techniques are applied on basic polynomial to generate the main and additional methods. These methods are implemented in block form to obtain the approximation at seven points simultaneously. Numerical experiments are conducted to illustrate the efficiency of the method. The method is also applied to solve the fourth order problem from ship dynamics.

  17. Hybridizing Particle Swarm Optimization and Differential Evolution for the Mobile Robot Global Path Planning

    Directory of Open Access Journals (Sweden)

    Biwei Tang

    2016-05-01

    Full Text Available Global path planning is a challenging issue in the filed of mobile robotics due to its complexity and the nature of nondeterministic polynomial-time hard (NP-hard. Particle swarm optimization (PSO has gained increasing popularity in global path planning due to its simplicity and high convergence speed. However, since the basic PSO has difficulties balancing exploration and exploitation, and suffers from stagnation, its efficiency in solving global path planning may be restricted. Aiming at overcoming these drawbacks and solving the global path planning problem efficiently, this paper proposes a hybrid PSO algorithm that hybridizes PSO and differential evolution (DE algorithms. To dynamically adjust the exploration and exploitation abilities of the hybrid PSO, a novel PSO, the nonlinear time-varying PSO (NTVPSO, is proposed for updating the velocities and positions of particles in the hybrid PSO. In an attempt to avoid stagnation, a modified DE, the ranking-based self adaptive DE (RBSADE, is developed to evolve the personal best experience of particles in the hybrid PSO. The proposed algorithm is compared with four state-of-the-art evolutionary algorithms. Simulation results show that the proposed algorithm is highly competitive in terms of path optimality and can be considered as a vital alternative for solving global path planning.

  18. The use of differential pressure feedback in an automatic flight control system

    Science.gov (United States)

    Levy, D. W.; Roskam, J.; Finn, P. D.

    1982-01-01

    A feasibility study has been performed to evaluate the performance of a system whereby a control surface is positioned with differential pressure as the feedback variable. Analogous to a position command system, the control surface is commanded to move until a certain differential pressure is achieved at a given point on the surface. Frequency response tests and theoretical considerations indicate that the pressure feedback transfer function is first order, with a break frequency up to 50 rad/sec. There exist applications to the outer loops of flight control systems as well. Stability augmentation, gust alleviation, and stall prevention appear to be possible by feeding back differential pressure across lifting and control surfaces.

  19. A hybrid differential evolution algorithm for meta-task scheduling in grids

    Institute of Scientific and Technical Information of China (English)

    Kang Qinma; Jiang Changjun; He Hong; Huang Qiangsheng

    2009-01-01

    Task scheduling is one of the core steps to effectively exploit the capabilities of heterogeneous resources in the grid. This paper presents a new hybrid differential evolution (HDE) algorithm for finding an optimal or near-optimal schedule within reasonable time. The encoding scheme and the adaptation of classical differential evolution algorithm for dealing with discrete variables are discussed. A simple but effective local search is incorporated into differential evolution to stress exploitation. The performance of the proposed HDE algorithm is showed by being compared with a genetic algorithm (GA) on a known static benchmark for the problem. Experimental results indicate that the proposed algorithm has better performance than GA in terms of both solution quality and computational time, and thus it can be used to design efficient dynamic schedulers in batch mode for real grid systems.

  20. Genetic architecture of transcript-level variation in differentiating xylem of a eucalyptus hybrid.

    Science.gov (United States)

    Kirst, Matias; Basten, Christopher J; Myburg, Alexander A; Zeng, Zhao-Bang; Sederoff, Ronald R

    2005-04-01

    Species diversity may have evolved by differential regulation of a similar set of genes. To analyze and compare the genetic architecture of transcript regulation in different genetic backgrounds of Eucalyptus, microarrays were used to examine variation in mRNA abundance in the differentiating xylem of a E. grandis pseudobackcross population [E. grandis x F(1) hybrid (E. grandis x E. globulus)]. Least-squares mean estimates of transcript levels were generated for 2608 genes in 91 interspecific backcross progeny. The quantitative measurements of variation in transcript abundance for specific genes were mapped as expression QTL (eQTL) in two single-tree genetic linkage maps (F(1) hybrid paternal and E. grandis maternal). EQTL were identified for 1067 genes in the two maps, of which 811 were located in the F(1) hybrid paternal map, and 451 in the E. grandis maternal map. EQTL for 195 genes mapped to both parental maps, the majority of which localized to nonhomologous linkage groups, suggesting trans-regulation by different loci in the two genetic backgrounds. For 821 genes, a single eQTL that explained up to 70% of the transcript-level variation was identified. Hotspots with colocalized eQTL were identified in both maps and typically contained genes associated with specific metabolic and regulatory pathways, suggesting coordinated genetic regulation.

  1. Study of utilizing differential gear train to achieve hybrid mechanism of mechanical press

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    The problems of hybrid input of mechanical press are studied in this paper, with differential gear train as transmission mechanism. It is proposed that “adjust-able-speed amplitude” or “differential-speed ratio” is the important parameters for the hybrid input mechanism. It not only defines the amplitude of the adjustable speed, but also determines the ratio of the power of the servomotor to the power of the conventional motor. The calculating equations of the ratio of transmission in all axes, the power of two motors, and the working load distribution are deduced. The two kinds of driving schemes are put forward that the servomotor and the conven-tional motor simultaneously drive and the servomotor and the conventional motor separately drive. The calculating results demonstrate that the latter scheme can use much lower power of the servomotor, so this scheme makes manufacture and use cost much lower. The latter scheme proposes a feasible way to apply the hybrid mechanism of mechanical press in practice engineering.

  2. Study of utilizing differential gear train to achieve hybrid mechanism of mechanical press

    Institute of Scientific and Technical Information of China (English)

    HE YuPeng; ZHAO ShengDun; ZOU Jun; ZHANG ZhiYuan

    2007-01-01

    The problems of hybrid input of mechanical press are studied in this paper, with differential gear train as transmission mechanism. It is proposed that "adjustable-speed amplitude" or "differential-speed ratio" is the important parameters for the hybrid input mechanism. It not only defines the amplitude of the adjustable speed, but also determines the ratio of the power of the servomotor to the power of the conventional motor. The calculating equations of the ratio of transmission in all axes, the power of two motors, and the working load distribution are deduced. The two kinds of driving schemes are put forward that the servomotor and the conventional motor simultaneously drive and the servomotor and the conventional motor separately drive. The calculating results demonstrate that the latter scheme can use much lower power of the servomotor, so this scheme makes manufacture and use cost much lower. The latter scheme proposes a feasible way to apply the hybrid mechanism of mechanical press in practice engineering.

  3. Approximation of weak adjoints by reverse automatic differentiation of BDF methods

    CERN Document Server

    Beigel, Dörte; Wirsching, Leonard; Bock, Hans Georg

    2011-01-01

    With this contribution, we shed light on the relation between the discrete adjoints of multistep backward differentiation formula (BDF) methods and the solution of the adjoint differential equation. To this end, we develop a functional-analytic framework based on a constrained variational problem and introduce the notion of weak adjoint solutions. We devise a finite element Petrov-Galerkin interpretation of the BDF method together with its discrete adjoint scheme obtained by reverse internal numerical differentiation. We show how the finite element approximation of the weak adjoint is computed by the discrete adjoint scheme and prove its asymptotic convergence in the space of normalized functions of bounded variation. We also obtain asymptotic convergence of the discrete adjoints to the classical adjoints on the inner time interval. Finally, we give numerical results for non-adaptive and fully adaptive BDF schemes. The presented framework opens the way to carry over the existing theory on global error estimat...

  4. The automatic solution of partial differential equations using a global spectral method

    Science.gov (United States)

    Townsend, Alex; Olver, Sheehan

    2015-10-01

    A spectral method for solving linear partial differential equations (PDEs) with variable coefficients and general boundary conditions defined on rectangular domains is described, based on separable representations of partial differential operators and the one-dimensional ultraspherical spectral method. If a partial differential operator is of splitting rank 2, such as the operator associated with Poisson or Helmholtz, the corresponding PDE is solved via a generalized Sylvester matrix equation, and a bivariate polynomial approximation of the solution of degree (nx ,ny) is computed in O ((nxny) 3 / 2) operations. Partial differential operators of splitting rank ≥3 are solved via a linear system involving a block-banded matrix in O (min ⁡ (nx3 ny ,nx ny3)) operations. Numerical examples demonstrate the applicability of our 2D spectral method to a broad class of PDEs, which includes elliptic and dispersive time-evolution equations. The resulting PDE solver is written in MATLAB and is publicly available as part of CHEBFUN. It can resolve solutions requiring over a million degrees of freedom in under 60 seconds. An experimental implementation in the JULIA language can currently perform the same solve in 10 seconds.

  5. Differential Gene Expression Between Hybrids and Their Parents During the Four Crucial Stages of Cotton Growth and Development

    Institute of Scientific and Technical Information of China (English)

    ZHAO Yun-lei; YU Shu-xun; XING Chao-zhu; FAN Shu-li; SONG Mei-zhen; YE Wu-wei

    2009-01-01

    The study aims to clarify the differential gene expression between cotton hybrids and their parents in order to better understand the molecular basis of cotton heterosis. The research focused on cotton heterotic and lower heterotic hybrids and their parents during the four crucial stages, which were analyzed using a differential display technique. The results indicated that there were both quantitative and qualitative differences in gene expression amongst them. The quantitative differences include over- and under-expression of parental genes and the dominant expression of highly-expressed parental genes in hybrids. In contrast, the qualitative differences are the following: (i) Bands were observed in both parents but not in the F1 hybrid (BPnF1); (ii) bands occurred in either of the parents but not in the F1 hybrid (UPnF1); (iii) bands presented only in the F1 hybrid but not in either of the parents (UF1nP); and (iv) bands were detected in either of the parents and the F1 hybrid (UPF1). Overall, the major differences of gene expression occurred in the qualitative level and four related differential patterns were observed. Furthermore, the amount of differential patterns during the flowering stage was relatively higher than those of other stages. At this juncture, both the amount of hybrid-specific expression patterns at flowering stage and the silenced expression patterns at boll-forming stage in highly heterotic hybrids were found higher than those in the lower heterotic ones. It was concluded that significant differences of gene expression in leaves were present between cotton hybrid and its parents during the whole growing stages. Hence, these differences might be responsible for the observed cotton heterosis.

  6. Biomimetic hybrid nanofibrous substrates for mesenchymal stem cells differentiation into osteogenic cells

    Energy Technology Data Exchange (ETDEWEB)

    Gandhimathi, Chinnasamy [Cellular and Molecular Epigenetics Lab, Lee Kong Chian School of Medicine, Nanyang Technological University (Singapore); Venugopal, Jayarama Reddy [Center for Nanofibers and Nanotechnology, Nanoscience and Nanotechnology Initiative, National University of Singapore (Singapore); Tham, Allister Yingwei [Cellular and Molecular Epigenetics Lab, Lee Kong Chian School of Medicine, Nanyang Technological University (Singapore); Ramakrishna, Seeram [Center for Nanofibers and Nanotechnology, Nanoscience and Nanotechnology Initiative, National University of Singapore (Singapore); Kumar, Srinivasan Dinesh, E-mail: dineshkumar@ntu.edu.sg [Cellular and Molecular Epigenetics Lab, Lee Kong Chian School of Medicine, Nanyang Technological University (Singapore)

    2015-04-01

    Mimicking native extracellular matrix with electrospun porous bio-composite nanofibrous scaffolds has huge potential in bone tissue regeneration. The aim of this study is to fabricate porous poly(L-lactic acid)-co-poly-(ε-caprolactone)/silk fibroin/ascorbic acid/tetracycline hydrochloride (PLACL/SF/AA/TC) and nanohydroxyapatite (n-HA) was deposited by calcium-phosphate dipping method for bone tissue engineering (BTE). Fabricated nanofibrous scaffolds were characterized for fiber morphology, hydrophilicity, porosity, mechanical test and chemical properties by FT-IR and EDX analysis. The results showed that the fiber diameter and pore size of scaffolds observed around 228 ± 62–320 ± 22 nm and 1.5–6.9 μm respectively. Resulting nanofibrous scaffolds are highly porous (87–94%) with ultimate tensile strength observed in the range of 1.51–4.86 MPa and also showed better hydrophilic properties after addition of AA, TC and n-HA. Human mesenchymal stem cells (MSCs) cultured on these bio-composite nanofibrous scaffolds and stimulated to osteogenic differentiation in the presence of AA/TC/n-HA for BTE. The cell proliferation and biomaterial interactions were studied using MTS assay, SEM and CMFDA dye exclusion methods. Osteogenic differentiation of MSCs was proven by using alkaline phosphatase activity, mineralization and double immunofluorescence staining of both CD90 and osteocalcin. The observed results suggested that the fabricated PLACL/SF/AA/TC/n-HA biocomposite hybrid nanofibrous scaffolds have good potential for the differentiation of MSCs into osteogenesis for bone tissue engineering. - Highlights: • We fabricated and characterized hybrid porous nanofibrous scaffolds. • PLACL/SF/AA/TC/n-HA scaffolds promote cell differentiation and mineralization. • Porous nanofibrous scaffolds initiate MSC differentiation into osteogenic cells. • Biomimetic nanofibrous scaffolds have good potential for bone tissue engineering.

  7. Identification of differentially expressed radiation-induced genes in cervix carcinoma cells using suppression subtractive hybridization

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Jun Sang; Lee, Young Sook; Lee, Jeung Hoon; Lee, Woong Hee; Seo, Eun Young; Cho, Moon June [Chungnam National University, Daejeon (Korea, Republic of)

    2005-03-15

    A number of genes and their products are induced early or late following exposure of cells to ionizing radiation. These radiation-induced genes have various effects of irradiated cells and tissues. Suppression subtractive hybridization (SSH) based on PCR was used to identify the differentially expressed genes by radiation in cervix carcinoma cells. Total RNA and poly (A){sup +} mRNA were isolated from irradiated and non-irradiated HeLa cells. Forward-and reverse-subtracted cDNA libraries were constructed using SSH. Eighty-eight clones of each were used to randomly select differentially expressed genes using reverse Northern blotting (dot blot analysis). Northern blotting was used to verify the screened genes. Of the 176 clones, 10 genes in the forward-subtracted library and 9 genes in the reverse-subtracted library were identified as differentially expressed radiation-induced genes by PCR-select differential screening. Three clones from the forward-subtracted library were confirmed by Northern blotting, and showed increased expression in a dose-dependent manner, including a telomerase catalytic subunit and sodium channel-like protein gene, and an ESTs (expressed sequence tags) gene. We identified differentially expressed radiation-induced genes with low-abundance genes with SSH, but further characterization of theses genes are necessary to clarify the biological functions of them.

  8. Identification and analysis of differentially expressed genes in differentiating xylem of Chinese fir (Cunninghamia lanceolata) by suppression subtractive hybridization.

    Science.gov (United States)

    Wang, Guifeng; Gao, Yan; Yang, Liwei; Shi, Jisen

    2007-12-01

    Wood is an important raw material for global industries with rapidly increasing demand. To isolate the genes differentially expressed during xylogenesis of Chinese fir (Cunninghamia lanceolata (Lamb.) Hook.), we used a novel system. Forward and reverse subtracted cDNA libraries were constructed using the suppression subtractive hybridization method; for the forward library we used cDNA from the mutant Dugansha as the tester and cDNA from the wild-type clone Jurong 0 as the driver, and for the reverse library we used Jurong 0 cDNA as the tester and Dugansha cDNA as the driver. Transcriptional profiling was performed using a macroarray with 4 digoxigenin-labeled probes. We obtained 618 and 409 clones from the forward and the reverse subtracted library, respectively. A total of 405 unique expressed sequence tags (ESTs) were obtained. Forty percent of the ESTs exhibited homologies with proteins of known function and fell into 4 major classes: metabolism, cell wall biogenesis and remodeling, signal transduction, and stress. Real-time PCR was performed to confirm the results. The expression levels of 11 selected ESTs were consistent with both macroarray and real-time PCR results. The systematic analysis of genes involved in wood formation in Chinese fir provides valuable insights into the molecular mechanisms involved in xylem differentiation and is an important resource for forest research that can be directed toward understanding the genetic control of wood formation and future endeavors to modify wood and fiber properties for industrial use.

  9. Hybrid Discrete Differential Evolution Algorithm for Lot Splitting with Capacity Constraints in Flexible Job Scheduling

    Directory of Open Access Journals (Sweden)

    Xinli Xu

    2013-01-01

    Full Text Available A two-level batch chromosome coding scheme is proposed to solve the lot splitting problem with equipment capacity constraints in flexible job shop scheduling, which includes a lot splitting chromosome and a lot scheduling chromosome. To balance global search and local exploration of the differential evolution algorithm, a hybrid discrete differential evolution algorithm (HDDE is presented, in which the local strategy with dynamic random searching based on the critical path and a random mutation operator is developed. The performance of HDDE was experimented with 14 benchmark problems and the practical dye vat scheduling problem. The simulation results showed that the proposed algorithm has the strong global search capability and can effectively solve the practical lot splitting problems with equipment capacity constraints.

  10. Isolation and identification of genes expressed differentially in rice inflorescence meristem with suppression subtractive hybridization

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    A subtracted cDNA library of rice (Oryza sativa L.) inflorescence meristem (IM) was constructed using the sup-pression subtractive hybridization (SSH) method. The cDNAs of the rice shoot apical meristem (SAM) were used as "driver" and inflorescence meristem (IM) as "tester" in the experiment, respectively. Forty of 250 randomly chosen cDNA clones were identified by differential screening, which were IM-specific or IM-highly expressed. Most of the rice IM cDNAs cloned by SSH appear to represent rare transcripts, 40% of which were derived from truly differentially ex-pressed genes. Of all the forty sequenced cDNA inserts, eleven contain the regions with 60%-90% identity to their homolog in GenBank, eighteen are expected to be new genes, only two correspond to published rice genes.

  11. Identification of differentially expressed genes after partial rat liver ischemia/reperfusion by suppression subtractive hybridization

    Institute of Scientific and Technical Information of China (English)

    Christine Fallsehr; Christina Zapletal; Michael Kremer; Resit Demir; Magnus von Knebel Doeberitz; Ernst Klar

    2005-01-01

    AIM: To identify potential diagnostic target genes in early reperfusion periods following warm liver ischemia before irreversible liver damage occurs.METHODS: We used two strategies (SSH suppression subtractive hybridization and hybridization of cDNA arrays)to determine early changes in gene expression profiles in a rat model of partial WI/R, comparing postischemic and adjacent nonischemic liver lobes. Differential gene expression was verified (WT/R; 1 h/2 h) and analyzed in more detail after warm ischemia (1 h) in a reperfusion time kinetics (0, 1, 2 and 6 h) and compared to untreated livers by Northern blot hybridizations. Protein expression was examined on Western blots and by immunohistochemistry for four differentially expressed target genes (Hsp70,Hsp27, Gadd45a and IL-1rl).RESULTS: Thirty-two individual WI/R target genes showing altered RNA levels after confirmation by Northern blot analyzes were identified. Among them, six functionally uncharacteristic expressed sequences and 26 known genes (12 induced in postischemic liver lobes, 14 with higher transcriptional expression in adjacent nonischemic liver lobes). Functional categories of the verified marker genes indicate on the one hand cellular stress and tissue damage but otherwise activation of protective cellular reactions (AP-1 transcription factors, apoptosis related genes, heat shock genes). In order to assign the transcriptional status to the biological relevant protein level we demonstrated that Hsp70, Hsp27, Gadd45a and IL-1rI were clearly up-regulated comparing postischemic and untreated rat livers, suggesting their involvement in the WI/R context.CONCLUSION: This study unveils a WI/R response gene set that will help to explore molecular pathways involved in the tissue damage after WI/R. In addition, these genes especially Hsp70and Gadd45a might represent promising new candidates indicating WI/R liver damage.

  12. Automatic Tissue Differentiation Based on Confocal Endomicroscopic Images for Intraoperative Guidance in Neurosurgery

    Directory of Open Access Journals (Sweden)

    Ali Kamen

    2016-01-01

    Full Text Available Diagnosis of tumor and definition of tumor borders intraoperatively using fast histopathology is often not sufficiently informative primarily due to tissue architecture alteration during sample preparation step. Confocal laser microscopy (CLE provides microscopic information of tissue in real-time on cellular and subcellular levels, where tissue characterization is possible. One major challenge is to categorize these images reliably during the surgery as quickly as possible. To address this, we propose an automated tissue differentiation algorithm based on the machine learning concept. During a training phase, a large number of image frames with known tissue types are analyzed and the most discriminant image-based signatures for various tissue types are identified. During the procedure, the algorithm uses the learnt image features to assign a proper tissue type to the acquired image frame. We have verified this method on the example of two types of brain tumors: glioblastoma and meningioma. The algorithm was trained using 117 image sequences containing over 27 thousand images captured from more than 20 patients. We achieved an average cross validation accuracy of better than 83%. We believe this algorithm could be a useful component to an intraoperative pathology system for guiding the resection procedure based on cellular level information.

  13. Finger tapping movements of Parkinson's disease patients automatically rated using nonlinear delay differential equations

    Science.gov (United States)

    Lainscsek, C.; Rowat, P.; Schettino, L.; Lee, D.; Song, D.; Letellier, C.; Poizner, H.

    2012-03-01

    Parkinson's disease is a degenerative condition whose severity is assessed by clinical observations of motor behaviors. These are performed by a neurological specialist through subjective ratings of a variety of movements including 10-s bouts of repetitive finger-tapping movements. We present here an algorithmic rating of these movements which may be beneficial for uniformly assessing the progression of the disease. Finger-tapping movements were digitally recorded from Parkinson's patients and controls, obtaining one time series for every 10 s bout. A nonlinear delay differential equation, whose structure was selected using a genetic algorithm, was fitted to each time series and its coefficients were used as a six-dimensional numerical descriptor. The algorithm was applied to time-series from two different groups of Parkinson's patients and controls. The algorithmic scores compared favorably with the unified Parkinson's disease rating scale scores, at least when the latter adequately matched with ratings from the Hoehn and Yahr scale. Moreover, when the two sets of mean scores for all patients are compared, there is a strong (r = 0.785) and significant (p <0.0015) correlation between them.

  14. Identification of differentially expressed genes in Mongolian sheep ovaries by suppression subtractive hybridization.

    Science.gov (United States)

    He, Xiaolong; Li, Bei; Wang, Feng; Tian, Chunying; Rong, Weiheng; Liu, Yongbin

    2012-07-01

    Fecundity is an important trait in sheep. Because it is directly related to production costs and efficiency, it has great economic impact in sheep husbandry. Because Mongolian sheep are a longstanding, indigenous breed, they are genetically related to most other breeds of sheep in China. The study of genes related to reproductive traits is essential to improving the fecundity of Mongolian sheep. In the present study, suppression subtractive hybridization (SSH) was performed using forward and reverse nested primers on cDNA libraries from ovarian tissue of single-bearing (S) and biparous (B) Mongolian sheep (MS). This yielded 768 clones. The length of the inserted fragments ranged from 150 to 1000 bp. From these, dot blot hybridization followed by sequencing and homology blast search in GenBank resolved 373 differentially expressed clones, representing 185 gene sequences (homology >85% and length >200 bp), 10 expressed sequence tags (ESTs; homology >95% and length >100 bp), and 4 unknown ESTs. The analysis of the differentially expressed gene functions allowed these genes to be categorized into seven groups: cell/body or immune defense, metabolism, transportation, nucleic acid modification, cell development, signal transduction, and cell structure. Four differentially expressed genes, a disintegrin and metalloproteinase with thrombospondin motifs 1 (ADAMTS1), inhibitor of DNA binding 3 (ID3), bone morphogenetic protein 6 (BMP6), and integrin beta 1 (ITGB1), were randomly selected and verified using relative quantitative real-time polymerase chain reaction (RQ-PCR). The expression of these genes in BMS ovaries was 30.06, 11.55, 0.82, and 1.12-fold that of SMS ovaries, respectively.

  15. Research and development of a high-performance differential-hybrid charge sensitive preamplifier.

    Science.gov (United States)

    Zeng, Guoqiang; Hu, Chuanhao; Wei, Shilong; Yang, Jian; Li, Qiang; Ge, Liangquan; Tan, Chengjun

    2017-02-01

    A differential-hybrid charge sensitive preamplifier (CSP) was designed by taking a monolithic dual N-Channel Junction Field-effect Transistor (JFET) and a high-speed, low-noise, operational amplifier as the core parts. Input-stage of the circuit employs low-noise differential dual JFET, which ensures high input impedance and low noise. The differential dual transistor makes the quiescent point of the first-stage differential output stable, which is convenient for connecting with the post stage high-speed operational amplifier. Broadband could be amplified by connecting to the double differential dual transistors through the folded cascode-bootstrap. The amplifying circuit which replaces the interstage and post stage discrete components of a traditional CSP with integrated operational amplifier is simpler and more reliable. It simplifies the design of the quiescent point, gives full play to advantages of releasing large open-loop gain, and improves charge-voltage conversion gain stability. Particularly, the charge-voltage conversion gain is larger under a smaller feedback capacitor, thus enabling to gain better signal-noise ratio. The designed CSP was tested, reporting 3.3×10(13) V/C charge sensitivity, about 90ns rise time of signals, 35:1 signal-noise ratio to gamma-rays of (137)Cs (662keV) and a 0.023 fC/pF noise slope. Gamma-rays of (241)Am (59.5keV) were measured by the BPX66 detector and the designed CSP under room temperature, providing 1.97% energy resolution. Copyright © 2016 Elsevier Ltd. All rights reserved.

  16. Identification of differentially expressed genes in uveal melanoma using suppressive subtractive hybridization

    Science.gov (United States)

    Landreville, Solange; Lupien, Caroline B.; Vigneault, Francois; Gaudreault, Manon; Mathieu, Mélissa; Rousseau, Alain P.; Guérin, Sylvain L.

    2011-01-01

    Purpose Uveal melanoma (UM) is the most common primary cancer of the eye, resulting not only in vision loss, but also in metastatic death. This study attempts to identify changes in the patterns of gene expression that lead to malignant transformation and proliferation of normal uveal melanocytes (UVM) using the Suppressive Subtractive Hybridization (SSH) technique. Methods The SSH technique was used to isolate genes that are differentially expressed in the TP31 cell line derived from a primary UM compared to UVM. The expression level of selected genes was further validated by microarray, semi-quantitative RT–PCR and western blot analyses. Results Analysis of the subtracted libraries revealed that 37 and 36 genes were, respectively, up- and downregulated in TP31 cells compared to UVM. Differential expression of the majority of these genes was confirmed by comparing UM cells with UVM by microarray. The expression pattern of selected genes was analyzed by semi-quantitative RT–PCR and western blot, and was found to be consistent with the SSH findings. Conclusions We demonstrated that the SSH technique is efficient to detect differentially expressed genes in UM. The genes identified in this study represent valuable candidates for further functional analysis in UM and should be informative in studying the biology of this tumor. PMID:21647268

  17. Optimum Synthesis of Mechanism for single- and hybrid-tasks using Differential Evolution

    CERN Document Server

    Penunuri, F; Villanueva, C; Pech-Oy, D

    2011-01-01

    In this document the optimal dimensional synthesis for planar mechanisms using differential evo- lution (DE) is shown. Four study cases are presented: in the first case, the synthesis of a mechanism for hybrid-tasks, considering path generation, function generation, and motion generation, is car- ried out. The second and third cases deal with path generation with and without prescribed timing. Finally, the synthesis of an Ackerman's mechanism is performed. The order defect problem is addressed by manipulating individuals instead of penalizing or discretizing the searching space for the parameters, as was proposed by other authors. A new technique which consists of applying a transformation in order to satisfy the Grashof and crank conditions to generate an initial elitist population is introduced. As a result, the evolutionary algorithm increases its efficiency.

  18. A hybrid algorithm for coupling partial differential equation and compartment-based dynamics.

    Science.gov (United States)

    Harrison, Jonathan U; Yates, Christian A

    2016-09-01

    Stochastic simulation methods can be applied successfully to model exact spatio-temporally resolved reaction-diffusion systems. However, in many cases, these methods can quickly become extremely computationally intensive with increasing particle numbers. An alternative description of many of these systems can be derived in the diffusive limit as a deterministic, continuum system of partial differential equations (PDEs). Although the numerical solution of such PDEs is, in general, much more efficient than the full stochastic simulation, the deterministic continuum description is generally not valid when copy numbers are low and stochastic effects dominate. Therefore, to take advantage of the benefits of both of these types of models, each of which may be appropriate in different parts of a spatial domain, we have developed an algorithm that can be used to couple these two types of model together. This hybrid coupling algorithm uses an overlap region between the two modelling regimes. By coupling fluxes at one end of the interface and using a concentration-matching condition at the other end, we ensure that mass is appropriately transferred between PDE- and compartment-based regimes. Our methodology gives notable reductions in simulation time in comparison with using a fully stochastic model, while maintaining the important stochastic features of the system and providing detail in appropriate areas of the domain. We test our hybrid methodology robustly by applying it to several biologically motivated problems including diffusion and morphogen gradient formation. Our analysis shows that the resulting error is small, unbiased and does not grow over time.

  19. DIFFERENTIATION OF PSEUDOCONDYLOMA OF VULVA AND CONDYLOMA ACUMINATA BY DOT BLOT HYBRIDIZATION AND POLYMERASE CHAIN REACTION

    Institute of Scientific and Technical Information of China (English)

    刘跃华; 王家璧; 司静懿

    1996-01-01

    This study differentiated pseudocondyloma of vulva from condyloma acunainata using dot blot hybridization and polymerase chain reaction (PCR). A total of 27 cases o{ pseudocondyloma of vulva and 65 cases of condyloma acuminata were selected for the sttldy. The genital lesions were examined clinically and were biopsled. Each biopsy v-as subjected to histological examination and HPV DNA analysis by dot blot hybridization and PCR. Dot blot analysis detected HPV DNA in 19(82.6%) out of 23 cases of condyloma acuminata and 2(25%) out of 8 cases pseudocondyloma of vulvae(P<0. 05). PCR detected HPV DNA in 51(92.7%) our of 55 cases of eondyloma acuminata, compared with none in 23 cases of pseudocondylorna(P<0. 001). HPV DNA was present in the majority of condyloma acuminata specimens, HPV 6 and 11 were the predominant types. Peudocondyloma is probably not associated with HPV. PCR was the most sensitive and useful techntque for HPV DNA detection.

  20. When Differential Privacy Meets Randomized Perturbation: A Hybrid Approach for Privacy-Preserving Recommender System

    KAUST Repository

    Liu, Xiao

    2017-03-21

    Privacy risks of recommender systems have caused increasing attention. Users’ private data is often collected by probably untrusted recommender system in order to provide high-quality recommendation. Meanwhile, malicious attackers may utilize recommendation results to make inferences about other users’ private data. Existing approaches focus either on keeping users’ private data protected during recommendation computation or on preventing the inference of any single user’s data from the recommendation result. However, none is designed for both hiding users’ private data and preventing privacy inference. To achieve this goal, we propose in this paper a hybrid approach for privacy-preserving recommender systems by combining differential privacy (DP) with randomized perturbation (RP). We theoretically show the noise added by RP has limited effect on recommendation accuracy and the noise added by DP can be well controlled based on the sensitivity analysis of functions on the perturbed data. Extensive experiments on three large-scale real world datasets show that the hybrid approach generally provides more privacy protection with acceptable recommendation accuracy loss, and surprisingly sometimes achieves better privacy without sacrificing accuracy, thus validating its feasibility in practice.

  1. ADF95: Tool for automatic differentiation of a FORTRAN code designed for large numbers of independent variables

    Science.gov (United States)

    Straka, Christian W.

    2005-06-01

    ADF95 is a tool to automatically calculate numerical first derivatives for any mathematical expression as a function of user defined independent variables. Accuracy of derivatives is achieved within machine precision. ADF95 may be applied to any FORTRAN 77/90/95 conforming code and requires minimal changes by the user. It provides a new derived data type that holds the value and derivatives and applies forward differencing by overloading all FORTRAN operators and intrinsic functions. An efficient indexing technique leads to a reduced memory usage and a substantially increased performance gain over other available tools with operator overloading. This gain is especially pronounced for sparse systems with large number of independent variables. A wide class of numerical simulations, e.g., those employing implicit solvers, can profit from ADF95. Program summaryTitle of program:ADF95 Catalogue identifier: ADVI Program summary URL:http://cpc.cs.qub.ac.uk/summaries/ADVI Program obtainable from: CPC Program Library, Queen's University of Belfast, N. Ireland Computer for which the program is designed: all platforms with a FORTRAN 95 compiler Programming language used:FORTRAN 95 No. of lines in distributed program, including test data, etc.: 3103 No. of bytes in distributed program, including test data, etc.: 9862 Distribution format: tar.gz Nature of problem: In many areas in the computational sciences first order partial derivatives for large and complex sets of equations are needed with machine precision accuracy. For example, any implicit or semi-implicit solver requires the computation of the Jacobian matrix, which contains the first derivatives with respect to the independent variables. ADF95 is a software module to facilitate the automatic computation of the first partial derivatives of any arbitrarily complex mathematical FORTRAN expression. The program exploits the sparsity inherited by many set of equations thereby enabling faster computations compared to alternate

  2. Graphene/single-walled carbon nanotube hybrids promoting osteogenic differentiation of mesenchymal stem cells by activating p38 signaling pathway

    Science.gov (United States)

    Yan, Xinxin; Yang, Wen; Shao, Zengwu; Yang, Shuhua; Liu, Xianzhe

    2016-01-01

    Carbon nanomaterials are becoming increasingly significant in biomedical fields since they exhibit exceptional physicochemical and biocompatible properties. Today, the stem cells offer potentially new therapeutic approaches in tissue engineering and regenerative medicine. However, the induction of differentiation into specific lineages remains challenging, which provoked us to explore the biomedical applications of carbon nanomaterials in stem cells. In this study, we investigated the interactions between graphene/single-walled carbon nanotube (G/SWCNT) hybrids and rat mesenchymal stem cells (rMSCs) and focused on the proliferation and differentiation of rMSCs treated with G/SWCNT hybrids. Cell viability and morphology were evaluated using cell counting kit-8 assay and immunofluorescence staining, respectively. Osteogenic differentiation evaluated by alkaline phosphatase activity of MSCs proved to be higher after treatment with G/SWCNT hybrids, and the mineralized matrix nodule formation was also enhanced. In addition, the expression levels of osteogenic-associated genes were upregulated, while the adipocyte-specific markers were downregulated. Consistent with these results, we illustrated that the effect of G/SWCNT hybrids on the process of osteogenic differentiation of rMSCs can be modulated by activating the p38 signaling pathway and inhibiting the extracellular signal-regulated kinase 1/2 pathway. Nevertheless, our study suggests that carbon nanomaterials offer a promising platform for regenerative medicine in the near future.

  3. Identification of differentially expressed genes in parasitic phase Miamiensis avidus (Ciliophora: Scuticociliatia) using suppression subtractive hybridization.

    Science.gov (United States)

    Lee, Eun Hye; Kim, Ki Hong

    2011-04-06

    Miamiensis avidus, a causative agent of scuticociliatosis in cultured marine fish, can live not only in seawater as a free-living organism but also in fish as a parasite. In this study, a cDNA library of representative mRNAs more specific to parasitic phase M. avidus was generated using suppression subtractive hybridization (SSH), and 520 clones selected from the SSH library were single-run sequenced. The differential gene expression patterns were confirmed by semi-quantitative reverse-transcription PCR. Of the 510 SSH clones, 21 clones of 6 putative genes did not match sequences in the public database. The expectation values (E-values) of 117 clones encoding 9 putative genes were greater than 1 x 10(-5). The other 372 clones that met the criterion of E value <1 x 10-5 were matched to 26 known sequences in the database. Genes associated with signal transduction, cell proliferation, membrane transportation, protein translocation, and transcription regulation were preferentially expressed in parasitic phase M. avidus. The differential gene expression may be needed for the ciliates to survive in the host fish, and the corresponding proteins might be used as antigen candidates for development of scuticociliatosis vaccines.

  4. Differential detection of pathogenic Yersinia spp. by fluorescence in situ hybridization.

    Science.gov (United States)

    Rohde, Alexander; Hammerl, Jens Andre; Appel, Bernd; Dieckmann, Ralf; Al Dahouk, Sascha

    2017-04-01

    Yersinia enterocolitica, Y. pseudotuberculosis and Y. pestis are pathogens of major medical importance, which are responsible for a considerable number of infections every year. The detection of these species still relies on cultural methods, which are slow, labour intensive and often hampered by the presence of high amounts of accompanying flora. In this study, fluorescence in situ hybridization (FISH) was used to develop a fast, sensitive and reliable alternative to detect viable bacteria in food. For this purpose, highly specific probes targeting the 16S and 23S ribosomal RNA were employed to differentially detect each of the three species. In order to enable the differentiation of single nucleotide polymorphisms (SNPs), suitable competitor oligonucleotides and locked nucleic acids (LNAs) were used. Starved cells still showed a strong signal and a direct viable count (DVC) approach combined with FISH optimized live/dead discrimination. Sensitivity of the FISH test was high and even a single cell per gram of spiked minced pork meat could be detected within a day, demonstrating the applicability to identify foodborne hazards at an early stage. In conclusion, the established FISH tests proved to be promising tools to compensate existing drawbacks of the conventional cultural detection of these important zoonotic agents. Copyright © 2016 Elsevier Ltd. All rights reserved.

  5. Minocycline Loaded Hybrid Composites Nanoparticles for Mesenchymal Stem Cells Differentiation into Osteogenesis

    Directory of Open Access Journals (Sweden)

    Allister Yingwei Tham

    2016-07-01

    Full Text Available Bone transplants are used to treat fractures and increase new tissue development in bone tissue engineering. Grafting of massive implantations showing slow curing rate and results in cell death for poor vascularization. The potentials of biocomposite scaffolds to mimic extracellular matrix (ECM and including new biomaterials could produce a better substitute for new bone tissue formation. A purpose of this study is to analyze polycaprolactone/silk fibroin/hyaluronic acid/minocycline hydrochloride (PCL/SF/HA/MH nanoparticles initiate human mesenchymal stem cells (MSCs proliferation and differentiation into osteogenesis. Electrospraying technique was used to develop PCL, PCL/SF, PCL/SF/HA and PCL/SF/HA/MH hybrid biocomposite nanoparticles and characterization was analyzed by field emission scanning electron microscope (FESEM, contact angle and Fourier transform infrared spectroscopy (FT-IR. The obtained results proved that the particle diameter and water contact angle obtained around 0.54 ± 0.12 to 3.2 ± 0.18 µm and 43.93 ± 10.8° to 133.1 ± 12.4° respectively. The cell proliferation and cell-nanoparticle interactions analyzed using (3-(4,5-dimethyl thiazol-2-yl-5-(3-carboxymethoxyphenyl-2-(4-sulfophenyl-2H-tetrazolium inner salt MTS assay (Promega, Madison, WI, USA, FESEM for cell morphology and 5-Chloromethylfluorescein diacetate (CMFDA dye for imaging live cells. Osteogenic differentiation was proved by expression of osteocalcin, alkaline phosphatase activity (ALP and mineralization was confirmed by using alizarin red (ARS. The quantity of cells was considerably increased in PCL/SF/HA/MH nanoparticles when compare to all other biocomposite nanoparticles and the cell interaction was observed more on PCL/SF/HA/MH nanoparticles. The electrosprayed PCL/SF/HA/MH biocomposite nanoparticle significantly initiated increased cell proliferation, osteogenic differentiation and mineralization, which provide huge potential for bone tissue engineering.

  6. Application of the hybrid method with constant coefficients to solving the integro-differential equations of first order

    Science.gov (United States)

    Mehdiyeva, Galina; Imanova, Mehriban; Ibrahimov, Vagif

    2012-11-01

    As is well known investigation of many processes of natural sciences reduce to the solving of initial value problem for integro-differential equations which are one of the priority areas of modern mathematics. To define the exact solution of such problems is not always possible. Therefore the scientists constructed approximate methods for solving them. There are a number of papers devoted to finding approximate solutions of integro-differential equations. Unlike at papers investigated, here the numerical solution of initial value problem for Volterra integro-differential equations by the hybrid methods, constructed concrete methods with the degree p ≤ 6 and suggested algorithm for using them.

  7. New version announcement for TaylUR, an arbitrary-order diagonal automatic differentiation package for Fortran 95

    Science.gov (United States)

    von Hippel, G. M.

    2007-06-01

    We present a new version of TaylUR, a Fortran 95 module to automatically compute the numerical values of a complex-valued function's derivatives with respect to several variables up to an arbitrary order in each variable, but excluding mixed derivatives. The new version fixes a potentially serious bug in the code for exponential-related functions that could corrupt the imaginary parts of derivatives, as well as being compatible with a wider range of compilers. Program summaryTitle of program: TaylUR Catalogue identifier: ADXR_v2_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/ADXR_v2_0 Program obtainable from: CPC Program Library, Queen's University of Belfast, N. Ireland Licensing provisions: none Programming language used: Fortran 95 Computer: Any computer with a conforming Fortran 95 compiler Operating system: Any system with a conforming Fortran 95 compiler No. of lines in distributed program, including test data, etc.: 6548 No. of bytes in distributed program, including test data, etc.: 17 468 Catalogue identifier of previous version: ADXR_v1_0 Journal reference of previous version: Comput. Phys. Comm. 174 (2006) 569-576 Does the new version supersede the previous version?: yes Distribution format:tar.gz Nature of problem: Problems that require potentially high orders of derivatives with respect to some variables or derivatives of complex-valued functions, such as, e.g., expansions of Feynman diagrams in particle masses in perturbative Quantum Field Theory. Solution method: Arithmetic operators and Fortran intrinsics are overloaded to act correctly on objects of a defined type taylor, which encodes a function along with its first few derivatives with respect to the user-defined independent variables. Derivatives of products and composite functions are computed using Leibniz's rule and Fàa di Bruno's formula. Reasons for the new version: The previous version [G.M. von Hippel, TaylUR, an arbitrary-order diagonal automatic differentiation package for

  8. Design, Construction and Effectiveness Analysis of Hybrid Automatic Solar Tracking System for Amorphous and Crystalline Solar Cells

    Directory of Open Access Journals (Sweden)

    Bhupendra Gupta

    2013-10-01

    Full Text Available - This paper concerns the design and construction of a Hybrid solar tracking system. The constructed device was implemented by integrating it with Amorphous & Crystalline Solar Panel, three dimensional freedom mechanism and microcontroller. The amount of power available from a photovoltaic panel is determined by three parameters, the type of solar tracker, materials of solar panel and the intensity of the sunlight. The objective of this paper is to present analysis on the use of two different material of Solar panel like Amorphous & Crystalline in a Solar tracking system at Stationary, Single Axis, Dual Axis & Hybrid Axis solar tracker to have better performance with minimum losses to the surroundings, as this device ensures maximum intensity of sun rays hitting the surface of the panel from sunrise to sunset

  9. Design, Construction and Effectiveness Analysis of Hybrid Automatic Solar Tracking System for Amorphous and Crystalline Solar Cells

    OpenAIRE

    Bhupendra Gupta

    2013-01-01

    - This paper concerns the design and construction of a Hybrid solar tracking system. The constructed device was implemented by integrating it with Amorphous & Crystalline Solar Panel, three dimensional freedom mechanism and microcontroller. The amount of power available from a photovoltaic panel is determined by three parameters, the type of solar tracker, materials of solar panel and the intensity of the sunlight. The objective of this paper is to present analysis on the use of two differ...

  10. Differential expression of genes identified by suppression subtractive hybridization in petals of opening carnation flowers.

    Science.gov (United States)

    Harada, Taro; Torii, Yuka; Morita, Shigeto; Masumura, Takehiro; Satoh, Shigeru

    2010-05-01

    Flower opening is an event accompanied by morphological changes in petals which include elongation, expansion, and outward-curving. Petal cell growth is a fundamental process that underlies such phenomena, but its molecular mechanism remains largely unknown. Suppression subtractive hybridization was performed between petals during the early elongation period (stage 1) and during the opening period (stage 5) in carnation flowers and a pair of subtraction libraries abundant in differentially expressed genes was constructed at each stage. 393 cDNA clones picked up by differential screening out of 1728 clones were sequenced and 235 different cDNA fragments were identified, among which 211 did not match any known nucleotide sequence of carnation genes in the databases. BLASTX search of nucleotide sequences revealed that putative functions of the translational products can be classified into several categories including transcription, signalling, cell wall modification, lipid metabolism, and transport. Open reading frames of 15 selected genes were successfully determined by rapid amplification of cDNA ends (RACE). Time-course analysis of these genes by real-time RT-PCR showed that transcript levels of several genes correlatively fluctuate in petals of opening carnation flowers, suggesting an association with the morphological changes by elongation or curving. Based on the results, it is suggested that the growth of carnation petals is controlled by co-ordinated gene expression during the progress of flower opening. In addition, the possible roles of some key genes in the initiation of cell growth, the construction of the cell wall and cuticle, and transport across membranes were discussed.

  11. Automatic Differential Principle and Control Strategy for 4WID-EV%4WID-EV的自动差速原理及控制策略

    Institute of Scientific and Technical Information of China (English)

    何竞松; 陈世元

    2013-01-01

    Focusing on the limitation of the research on differential driving of four wheels independent drive electric vehicle (4WID-EV), which always takes power wheels as research object and neglects the effect of internal force adjustment of vehicle chassis, this paper establishes a vehicle longitudinal dynamics mathematical model with chassis internal force and tire lateral force. Automatic differential principle for 4WID-EV is studied through detailed analysis of the forces imposed on each wheel in the model and the control strategy of "suboptimal torque combination" is formulated. The virtual sample of the vehicle is constructed in Automatic Dynamic Analysis of Mechanical Systems (ADAMS) and its mathematical model, differential and control performance are verified through simulation. Results show that the mathematical model is accurate and able to improve the automatic differential and control performance of the vehicle.%针对研究四轮独立驱动电动汽车差速行驶问题时仅以动力轮为研究对象而忽略车架内力调节作用的局限性.建立含有车架内力和车轮侧向力的汽车纵向动力学数学模型.通过对模型中各车轮的受力细分,研究四轮独立驱动电动汽车的自动差速原理,并制定“次最优转矩组合”的控制策略.在ADAMS中构建该车辆虚拟样机并对其数学模型、差速性能、控制性能进行仿真验证.结果表明,数学模型准确,车辆的自动差速性能和控制性能更佳.

  12. Hybrid cells derived from breast epithelial cell/breast cancer cell fusion events show a differential RAF-AKT crosstalk

    Directory of Open Access Journals (Sweden)

    Özel Cem

    2012-04-01

    Full Text Available Abstract Background The biological phenomenon of cell fusion has been linked to several characteristics of tumour progression, including an enhanced metastatogenic capacity and an enhanced drug resistance of hybrid cells. We demonstrated recently that M13SV1-EGFP-Neo breast epithelial cells exhibiting stem cell characteristics spontaneously fused with MDA-MB-435-Hyg breast cancer cells, thereby giving rise to stable M13MDA435 hybrid cells, which are characterised by a unique gene expression profile and migratory behaviour. Here we investigated the involvement of the PLC-β/γ1, PI3K/AKT and RAS-RAF-ERK signal transduction cascades in the EGF and SDF-1α induced migration of two M13MDA435 hybrid cell clones in comparison to their parental cells. Results Analysis of the migratory behaviour by using the three-dimensional collagen matrix migration assay showed that M13SV1-EGFP-Neo cells as well as M13MDA435 hybrid cells, but not the breast cancer cell line, responded to EGF stimulation with an increased locomotory activity. By contrast, SDF-1α solely stimulated the migration of M13SV1-EGFP-Neo cells, whereas the migratory activity of the other cell lines was blocked. Analysis of signal transduction cascades revealed a putative differential RAF-AKT crosstalk in M13MDA435-1 and -3 hybrid cell clones. The PI3K inhibitor Ly294002 effectively blocked the EGF induced migration of M13MDA435-3 hybrid cells, whereas the EGF induced locomotion of M13MDA435-1 hybrid cells was markedly increased. Analysis of RAF-1 S259 phosphorylation, being a major mediator of the negative regulation of RAF-1 by AKT, showed decreased pRAF-1 S259 levels in LY294002 treated M13MDA435-1 hybrid cells. By contrast, pRAF-1 S259 levels remained unaltered in the other cell lines. Inhibition of PI3K/AKT signalling by Ly294002 relieves the AKT mediated phosphorylation of RAF-1, thereby restoring MAPK signalling. Conclusions Here we show that hybrid cells could evolve exhibiting a

  13. Identification of Differentially Expressed Genes Associated with Apple Fruit Ripening and Softening by Suppression Subtractive Hybridization.

    Directory of Open Access Journals (Sweden)

    Zongying Zhang

    Full Text Available Apple is one of the most economically important horticultural fruit crops worldwide. It is critical to gain insights into fruit ripening and softening to improve apple fruit quality and extend shelf life. In this study, forward and reverse suppression subtractive hybridization libraries were generated from 'Taishanzaoxia' apple fruits sampled around the ethylene climacteric to isolate ripening- and softening-related genes. A set of 648 unigenes were derived from sequence alignment and cluster assembly of 918 expressed sequence tags. According to gene ontology functional classification, 390 out of 443 unigenes (88% were assigned to the biological process category, 356 unigenes (80% were classified in the molecular function category, and 381 unigenes (86% were allocated to the cellular component category. A total of 26 unigenes differentially expressed during fruit development period were analyzed by quantitative RT-PCR. These genes were involved in cell wall modification, anthocyanin biosynthesis, aroma production, stress response, metabolism, transcription, or were non-annotated. Some genes associated with cell wall modification, anthocyanin biosynthesis and aroma production were up-regulated and significantly correlated with ethylene production, suggesting that fruit texture, coloration and aroma may be regulated by ethylene in 'Taishanzaoxia'. Some of the identified unigenes associated with fruit ripening and softening have not been characterized in public databases. The results contribute to an improved characterization of changes in gene expression during apple fruit ripening and softening.

  14. Identification of Differentially Expressed Genes Associated with Apple Fruit Ripening and Softening by Suppression Subtractive Hybridization.

    Science.gov (United States)

    Zhang, Zongying; Jiang, Shenghui; Wang, Nan; Li, Min; Ji, Xiaohao; Sun, Shasha; Liu, Jingxuan; Wang, Deyun; Xu, Haifeng; Qi, Sumin; Wu, Shujing; Fei, Zhangjun; Feng, Shouqian; Chen, Xuesen

    2015-01-01

    Apple is one of the most economically important horticultural fruit crops worldwide. It is critical to gain insights into fruit ripening and softening to improve apple fruit quality and extend shelf life. In this study, forward and reverse suppression subtractive hybridization libraries were generated from 'Taishanzaoxia' apple fruits sampled around the ethylene climacteric to isolate ripening- and softening-related genes. A set of 648 unigenes were derived from sequence alignment and cluster assembly of 918 expressed sequence tags. According to gene ontology functional classification, 390 out of 443 unigenes (88%) were assigned to the biological process category, 356 unigenes (80%) were classified in the molecular function category, and 381 unigenes (86%) were allocated to the cellular component category. A total of 26 unigenes differentially expressed during fruit development period were analyzed by quantitative RT-PCR. These genes were involved in cell wall modification, anthocyanin biosynthesis, aroma production, stress response, metabolism, transcription, or were non-annotated. Some genes associated with cell wall modification, anthocyanin biosynthesis and aroma production were up-regulated and significantly correlated with ethylene production, suggesting that fruit texture, coloration and aroma may be regulated by ethylene in 'Taishanzaoxia'. Some of the identified unigenes associated with fruit ripening and softening have not been characterized in public databases. The results contribute to an improved characterization of changes in gene expression during apple fruit ripening and softening.

  15. Differentially expressed genes of virulent and nonvirulent Entamoeba histolytica strains identified by suppression subtractive hybridization.

    Science.gov (United States)

    Freitas, Michelle A R; Alvarenga, Ângela C; Fernandes, Helen C; Gil, Frederico F; Melo, Maria N; Pesquero, Jorge L; Gomes, Maria A

    2014-01-01

    Entamoeba histolytica is a parasite which presents capacity to degrade tissues and therefore has a pathogenic behavior. As this behavior is not shown by all strains, there have been several studies investigating molecular basis of the cytotoxicity process. Using the suppression subtractive hybridization (SSH) technique, differential gene expressions of two E. histolytica strains, one virulent (EGG) and one nonvirulent (452), have been analyzed with the purpose of isolating genes which may be involved with amoebic virulence. Nine cDNA fragments presenting high homology with E. histolytica previously sequenced genes were subtracted. Of these, four genes were confirmed by RT-PCR. Two coding for hypothetical proteins, one for a cysteine-rich protein, expressed only in the virulent strain, EGG and another one, coding for grainin 2 protein, exclusive from 452 strain. This study provided new insight into the proteins differences in the virulent and nonvirulent E. histolytica strains. We believe that further studies with these proteins may prove association of them with tissue damage, providing new perceptions to improve treatment or diagnosis of the invasive disease.

  16. Differentially Expressed Genes of Virulent and Nonvirulent Entamoeba histolytica Strains Identified by Suppression Subtractive Hybridization

    Directory of Open Access Journals (Sweden)

    Michelle A. R. Freitas

    2014-01-01

    Full Text Available Entamoeba histolytica is a parasite which presents capacity to degrade tissues and therefore has a pathogenic behavior. As this behavior is not shown by all strains, there have been several studies investigating molecular basis of the cytotoxicity process. Using the suppression subtractive hybridization (SSH technique, differential gene expressions of two E. histolytica strains, one virulent (EGG and one nonvirulent (452, have been analyzed with the purpose of isolating genes which may be involved with amoebic virulence. Nine cDNA fragments presenting high homology with E. histolytica previously sequenced genes were subtracted. Of these, four genes were confirmed by RT-PCR. Two coding for hypothetical proteins, one for a cysteine-rich protein, expressed only in the virulent strain, EGG and another one, coding for grainin 2 protein, exclusive from 452 strain. This study provided new insight into the proteins differences in the virulent and nonvirulent E. histolytica strains. We believe that further studies with these proteins may prove association of them with tissue damage, providing new perceptions to improve treatment or diagnosis of the invasive disease.

  17. A Hybrid Multiobjective Differential Evolution Algorithm and Its Application to the Optimization of Grinding and Classification

    Directory of Open Access Journals (Sweden)

    Yalin Wang

    2013-01-01

    Full Text Available The grinding-classification is the prerequisite process for full recovery of the nonrenewable minerals with both production quality and quantity objectives concerned. Its natural formulation is a constrained multiobjective optimization problem of complex expression since the process is composed of one grinding machine and two classification machines. In this paper, a hybrid differential evolution (DE algorithm with multi-population is proposed. Some infeasible solutions with better performance are allowed to be saved, and they participate randomly in the evolution. In order to exploit the meaningful infeasible solutions, a functionally partitioned multi-population mechanism is designed to find an optimal solution from all possible directions. Meanwhile, a simplex method for local search is inserted into the evolution process to enhance the searching strategy in the optimization process. Simulation results from the test of some benchmark problems indicate that the proposed algorithm tends to converge quickly and effectively to the Pareto frontier with better distribution. Finally, the proposed algorithm is applied to solve a multiobjective optimization model of a grinding and classification process. Based on the technique for order performance by similarity to ideal solution (TOPSIS, the satisfactory solution is obtained by using a decision-making method for multiple attributes.

  18. Differentially expressed genes implicated in embryo abortion of mango identified by suppression subtractive hybridization.

    Science.gov (United States)

    He, J H; Ma, F W; Chen, Y Y; Shu, H R

    2012-11-14

    Embryo abortion in mango severely damages mango production worldwide. The mechanisms by which the mango embryos abort have long been an intriguing question. We used subtractive suppression hybridization to investigate the differentially expressed genes involved in this process. We generated 2 cDNA libraries from normal seed and aborted seed embryos of mango cultivar 'Jinhuang'. One thousand five hundred and seventy-two high-quality expressed sequence tags (ESTs) were obtained, with 1092 from the normal seed tester library and 480 from the aborted seed tester library. These ESTs were assembled into 783 unigenes, including 147 contigs and 636 singletons in contigs; 297 singletons in gene ontology (GO) indicated coverage of a broad range of GO categories. Seven candidate genes from different categories were selected for semi-quantitative PCR analysis, and their possible functions in embryo abortion are discussed. These data provide new insight into the genetic regulation of embryo abortion in mango and may aid in further identification of novel genes and their functions.

  19. Fully automatic differential diagnosis system for dementia with Lewy bodies and Alzheimer's disease using FDG-PET and 3D-SSP

    Energy Technology Data Exchange (ETDEWEB)

    Kono, Atsushi K.; Ishii, Kazunari; Sofue, Keitaro; Miyamoto, Naokazu [Hyogo Brain and Heart Center, Department of Radiology and Nuclear Medicine, Himeji, Hyogo (Japan); Sakamoto, Setsu [Himeji Central Hospital, PET Center, Himeji, Hyogo (Japan); Mori, Etsuro [Tohoku University Graduate School of Medicine, Behavioral Neurology and Cognitive Neuroscience, Sendai, Miyagi (Japan)

    2007-09-15

    To evaluate a fully automatic computer-assisted diagnostic system for mild dementia with Lewy bodies (DLB), permitting distinction from mild Alzheimer's disease (AD). Using{sup 18}F-fluorodeoxyglucose and positron emission tomography (FDG-PET), glucose metabolic images were obtained from mild DLB and mild AD patients. Two groups consisting of 16 mild DLB patients and 21 mild AD patients were recruited for diagnostic evaluation between mild DLB and mild AD. The mean age {+-} SD of the mild DLB group and the mild AD group was 74.3 {+-} 4.9 and 71.7 {+-} 2.1 years, respectively, and the mean scores of the MMSE for the mild DLB and the mild AD group were 21.7 {+-} 1.9 and 23.1 {+-} 2.1, respectively. A receiver operating characteristic (ROC) analysis was performed to compare the diagnostic performance, in terms of discrimination between DLB and AD, of conventional axial FDG-PET images inspected visually by experts and beginners with that of our fully automatic diagnosis system using the statistical brain mapping method and Z scores obtained with the DLB template. The diagnostic performance of the automatic system was comparable to that of visual inspection by experts. The area under the ROC curve for the automatic diagnosis system was 0.77. The mean area under the ROC curve for visual inspection by experts and beginners was 0.76 and 0.65, respectively. The fully automatic differential diagnosis system for distinction between mild DLB and AD showed a similar diagnostic accuracy to visual inspection by experts. It would be a useful diagnostic tool to distinguish mild DLB from mild AD in clinical practice. (orig.)

  20. Screening and cloning of differentially expressed genes in placentas from patients of pregnancy-induced hypertension by suppression subtractive hybridization

    Institute of Scientific and Technical Information of China (English)

    尹国武; 姜锋; 李东红; 姚元庆

    2003-01-01

    Suppresssion subtractive hybridization (SSH) was preformed to compare gene expression profiles of PIH patients and normal pregnancy placentas. The subtractive cDNA library of PIH placenta was set up and screedned. Differential cDNAs were cloned, and sequenced by T 7 primer methodology. One hundred and three differential cDNAs were isolated by SSH. Sequencing and BLAST analysis showed 90 inserts shared more than 95% homolog with sequences in the GenBank/EMBL database. We identified 36 putative genes including pregnancy-specific glycoprotein gene (BC005924), serine protease inhibitor gene(BC012868), VEGFR-1 gene(AF063657, etc.

  1. A Preliminary Study on the Relationship Between the Indica-Japonica RAPD Differentiation of Parents and Heterosis in Dian Type Hybrid Rice

    Institute of Scientific and Technical Information of China (English)

    LONG Wen-hong; XU Ming-hui; ZHANG Shu-hua

    2002-01-01

    The relationship between the indica-japonica differentiation of parents and heterosis of hybridin rice was studied with 10 sterile lines, 10 maintainer lines of the sterile lines, 38 restorer lines of Dian typehybrid rice and 40 hybrids derived from the sterile lines and restorer lines. The results indicated that there wasa parabolic correlation between the indica-japonica differentiation of parents detected by RAPD markers andheterosis of hybrid rice. When certain indica-japonica differentiation of parents exists, the percentage of com-binations with positve heterosis and the mean heterosis of hybrids were high. But that didn't mean too muchdifference of parents could lead to stronger hetesosis, that meant overdiffernt parents seldom bring positve het-erotic hybrids. Suitable difference of percent of indica alleles of parents of stronger heterotic hybrid was 12 -16%.

  2. Current and historical hybridization with differential introgression among three species of cyprinid fishes (genus Cyprinella).

    Science.gov (United States)

    Broughton, Richard E; Vedala, Krishna C; Crowl, Tessa M; Ritterhouse, Lauren L

    2011-05-01

    Hybridization is common among freshwater fishes, particular among the Cyprinidae. We used two mitochondrial genes and one nuclear gene to characterize hybridization among two species pairs of Cyprinella in southwestern North America. Genalogical patterns revealed that C. lutrensis and C. venusta are currently hybridizing in several localities producing apparent F(1), F(2) and backcross generations, yet there was no evidence for introgression outside of local hybrid zones. Alternatively, mitochondrial haplotypes from C. lutrensis appear to have introgressed into a C. lepida population in the Nueces River completely replacing the native C. lepida haplotype. There was no evidence of introgression of nuclear DNA and there does not appear to be ongoing hybridization. The population of C. lepida from the nearby Frio River exhibits no evidence of hybridization with C. lutrensis. Thus, contact between C. lutrensis and C. venusta results in the formation of localized hybrid swarms, while contact between C. lutrensis and C. lepida has resulted in complete mitochondrial introgression in the Nueces River or no apparent hybridization in the Frio River. The three different outcomes of contact between these species illustrate the variable nature of interspecific reproductive interactions and provide an excellent system in which to better understand the factors influencing hybridization among freshwater fishes.

  3. Differential pollinator effectiveness and importance in a milkweed (Asclepias, Apocynaceae) hybrid zone.

    Science.gov (United States)

    Stoepler, Teresa M; Edge, Andrea; Steel, Anna; O'Quinn, Robin L; Fishbein, Mark

    2012-03-01

    Exceptions to the ideal of complete reproductive isolation between species are commonly encountered in diverse plant, animal, and fungal groups, but often the causative ecological processes are poorly understood. In flowering plants, the outcome of hybridization depends in part on the effectiveness of pollinators in interspecific pollen transport. In the Asclepias exaltata and A. syriaca (Apocynaceae) hybrid zone in Shenandoah National Park, Virginia, extensive introgression has been documented. The objectives of this study were to (1) determine the extent of pollinator overlap among A. exaltata, A. syriaca, and their hybrids and (2) identify the insect taxa responsible for hybridization and introgression. We observed focal plants of parental species and hybrids to measure visitation rate, visit duration, and per-visit pollinia removal and deposition, and we calculated pollinator effectiveness and importance. Visitation rates varied significantly between the 2 yr of the study. Overall, Apis mellifera, Bombus sp., and Epargyreus clarus were the most important pollinators. However, Bombus sp. was the only visitor that was observed to both remove and insert pollinia for both parent species as well as hybrids. We conclude that Bombus may be a key agent of hybridization and introgression in these sympatric milkweed populations, and hybrids are neither preferred nor selected against by pollinators. Thus, we have identified a potential mechanism for how hybrids act as bridges to gene flow between A. exaltata and A. syriaca. These results provide insights into the breakdown of prezygotic isolating mechanisms.

  4. Profiling of differentially expressed genes using suppression subtractive hybridization in an equine model of chronic asthma.

    Directory of Open Access Journals (Sweden)

    Jean-Pierre Lavoie

    Full Text Available BACKGROUND: Gene expression analyses are used to investigate signaling pathways involved in diseases. In asthma, they have been primarily derived from the analysis of bronchial biopsies harvested from mild to moderate asthmatic subjects and controls. Due to ethical considerations, there is currently limited information on the transcriptome profile of the peripheral lung tissues in asthma. OBJECTIVE: To identify genes contributing to chronic inflammation and remodeling in the peripheral lung tissue of horses with heaves, a naturally occurring asthma-like condition. METHODS: Eleven adult horses (6 heaves-affected and 5 controls were studied while horses with heaves were in clinical remission (Pasture, and during disease exacerbation induced by a 30-day natural antigen challenge during stabling (Challenge. Large peripheral lung biopsies were obtained by thoracoscopy at both time points. Using suppression subtractive hybridization (SSH, lung cDNAs of controls (Pasture and Challenge and asymptomatic heaves-affected horses (Pasture were subtracted from cDNAs of horses with heaves in clinical exacerbation (Challenge. The differential expression of selected genes of interest was confirmed using quantitative PCR assay. RESULTS: Horses with heaves, but not controls, developed airway obstruction when challenged. Nine hundred and fifty cDNA clones isolated from the subtracted library were screened by dot blot array and 224 of those showing the most marked expression differences were sequenced. The gene expression pattern was confirmed by quantitative PCR in 15 of 22 selected genes. Novel genes and genes with an already defined function in asthma were identified in the subtracted cDNA library. Genes of particular interest associated with asthmatic airway inflammation and remodeling included those related to PPP3CB/NFAT, RhoA, and LTB4/GPR44 signaling pathways. CONCLUSIONS: Pathways representing new possible targets for anti-inflammatory and anti

  5. Suppression subtractive hybridization reveals differentially expressed genes in supraspinous ligaments of patients with ankylosing spondylitis.

    Science.gov (United States)

    Zhang, Ying; Hu, Xu; Zhang, Chao; Zhou, Yue; Chu, Tong-Wei

    2015-06-01

    Ankylosing spondylitis (AS) is a severe chronic inflammatory disease that may ultimately result in the development of a 'bamboo‑like' spine. Although the pathological changes that occur in AS have been extensively investigated, the mechanism underlying spinal fusion during AS remains elusive. Differentially expressed genes (DEGs) in paraspinal tissues from patients with AS compared with those from healthy controls were therefore investigated. Polymerase chain reaction (PCR)‑based suppression subtractive hybridization was performed using total mRNA from the supraspinal ligaments of three patients with AS and three patients with spinal fractures as controls. From this, 27 genes were identified in all of the three independent forward libraries, which were defined as DEGs associated with AS. Reverse transcription‑quantitative PCR demonstrated that six DEGs were overexpressed in the tissues from patients with AS compared with those from individuals in the control group, including those encoding transforming growth factor β types I and III receptor, vascular endothelial growth factor, matrix metalloproteinase‑3, core‑binding factor α1 and bone morphogenetic protein 2. Western blot analysis showed increased expression in all six of these proteins in the samples from patients with AS compared with those in the control groups. These findings suggested that changes in the expression of these genes and proteins are associated with the development of spinal fusion during the pathogenesis of AS. Furthermore, these genes may be novel markers of the risk of developing AS, in addition to being targets for the treatment of this disease.

  6. Spatial and temporal variability of xylan distribution in differentiating secondary xylem of hybrid aspen.

    Science.gov (United States)

    Kim, Jong Sik; Sandquist, David; Sundberg, Björn; Daniel, Geoffrey

    2012-06-01

    Xylans occupy approximately one-third of the cell wall components in hardwoods and their chemical structures are well understood. However, the microdistribution of xylans (O-acetyl-4-O-methylglucuronoxylans, AcGXs) in the cell wall and their correlation with functional properties of cells in hardwood xylem is poorly understood. We demonstrate here the spatial and temporal distribution of xylans in secondary xylem cells of hybrid aspen using immunolocalization with LM10 and LM11 antibodies. Xylan labeling was detected earliest in fibers at the cell corner of the S₁ layer, and then later in vessels and ray cells respectively. Fibers showed a heterogeneous labeling pattern in the mature cell wall with stronger labeling of low substituted xylans (lsAcGXs) in the outer than inner cell wall. In contrast, vessels showed uniform labeling in the mature cell wall with stronger labeling of lsAcGXs than fibers. Xylan labeling in ray cells was detected much later than that in fibers and vessels, but was also detected at the beginning of secondary cell wall formation as in fibers and vessels with uniform labeling in the cell wall regardless of developmental stage. Interestingly, pit membranes including fiber-, vessel- and ray-vessel pits showed strong labeling of highly substituted xylans (hsAcGXs) during differentiation, although this labeling gradually disappeared during pit maturation. Together our observations indicate that there are temporal and spatial variations of xylan deposition and chemical structure of xylans between cells in aspen xylem. Differences in xylan localization between aspen (hardwood) and cedar (softwood) are also discussed.

  7. From Godunov to a unified hybridized discontinuous Galerkin framework for partial differential equations

    Science.gov (United States)

    Bui-Thanh, Tan

    2015-08-01

    By revisiting the basic Godunov approach for system of linear hyperbolic Partial Differential Equations (PDEs) we show that it is hybridizable. As such, it is a natural recipe for us to constructively and systematically establish a unified hybridized discontinuous Galerkin (HDG) framework for a large class of PDEs including those of Friedrichs' type. The unification is fourfold. First, it provides a single constructive procedure to devise HDG schemes for elliptic, parabolic, hyperbolic, and mixed-type PDEs. The key that we exploit is the fact that, for many PDEs, irrespective of their type, the first order form is a hyperbolic system. Second, it reveals the nature of the trace unknowns as the upwind states. Third, it provides a parameter-free HDG framework, and hence eliminating the "usual complaint" that HDG is a parameter-dependent method. Fourth, it allows us to rediscover most existing HDG methods and furthermore discover new ones. We apply the proposed unified framework to three different PDEs: the convection-diffusion-reaction equation, the Maxwell equation in frequency domain, and the Stokes equation. The purpose is to present a step-by-step construction of various HDG methods, including the most economic ones with least trace unknowns, by exploiting the particular structure of the underlying PDEs. The well-posedness of the resulting HDG schemes, i.e. the existence and uniqueness of the HDG solutions, is proved. The well-posedness result is also extended and proved for abstract Friedrichs' systems. We also discuss variants of the proposed unified framework and extend them to the popular Lax-Friedrichs flux and to nonlinear PDEs. Numerical results for transport equation, convection-diffusion equation, compressible Euler equation, and shallow water equation are presented to support the unification framework.

  8. Differential predation on tadpoles influences the potential effects of hybridization between Hyla cinerea and Hyla gratiosa

    Science.gov (United States)

    Gunzburger, M.S.

    2005-01-01

    Long-term effects of hybridization and introgression are influenced by performance of hybrids in habitats of parental species. The treefrogs Hyla cinerea and Hyla gratiosa, which typically breed in permanent and temporary habitats, respectively, have occasionally hybridized throughout the Southeastern United States. To predict in which of the parental habitats effects of hybridization might be strongest, I performed experiments to evaluate predation on tadpoles of H. cinerea, H. gratiosa, and F1 hybrids with predators typical of the breeding habitats of the parental species. Hybrid tadpoles had lower survival with sunfish than odonate naiad (dragonfly) predators and tended to increase hiding behavior in response to sunfish predation. Tadpoles of H. gratiosa also had higher survival with odonates than sunfish, but H. cinerea had similar survival with both predator types. These results suggest that hybrids are most likely to survive and return to breed in temporary habitats used by H. gratiosa. Thus, hybridization and introgression might be more likely to have adverse effects on populations of H. gratiosa than H. cinerea. Copyright 2005 Society for the Study of Amphibians and Reptiles.

  9. Identification of differentially expressed genes in lung tissues of nickel-exposed rats using suppression subtractive hybridization.

    Science.gov (United States)

    Zhang, Jing; Zhang, Jun; Fan, Yingying; Liu, Lihong; Li, Mengjie; Zhou, Yang; Shao, Zhihua; Shi, Hongjun; Wang, Ying

    2011-11-01

    Occupational exposure to nickel compound, such as nickel refining, electroplating, and in conjunction with other metals, is harmful to the health, causing respiratory distress, and lung and nasal cancer. In this work, the different gene expression patterns of lung tissues from nickel-exposed rats and controls were investigated. The suppression subtractive hybridization (SSH) method was used to generate two subtracted cDNA libraries with gene transcripts differentially expressed after nickel inducing. Dot-blot hybridizations were used to confirm differential ratios of expression of obtained SSH clones. Out of 768 unique SSH clones, which were chosen randomly from the two subtraction libraries (384 of each), 319 could be verified as differentially expressed. According to blast screening and functional annotation, 28% genes in nickel-induced cDNA library were related to cell differentiation, whereas 21% in driver library were related to oxygen transport. Two novel expressed sequence tags (ESTs; NCBI Accession No. FC809414 and No. FC809411) in nickel-induced cDNA library were obtained. The genes detected in the present study are probably important genes associated with nickel-induced lung cancer.

  10. Optimal Line Pressure Control for an Automatic Transmission-Based Parallel Hybrid Electric Vehicle considering Mode Change and Gear Shift

    Directory of Open Access Journals (Sweden)

    Minseok Song

    2014-05-01

    Full Text Available An optimal line pressure control algorithm was proposed for the fuel economy improvement of an AT-based parallel hybrid electric vehicle (HEV. By performing lever analysis at each gear step, the required line pressure was obtained considering the torque ratio of the friction elements. In addition, the required line pressure of the mode clutch was calculated. Based on these results, the optimal line pressure map at each gear step of the EV and HEV modes was presented. Using the line pressure map, an optimal line pressure was performed for the AT input torque and mode. To investigate the proposed line pressure control algorithm, a HEV performance simulator was developed based on the powertrain model of the target HEV, and fuel economy improvement was evaluated. Simulation results showed that as the gear step became higher, the optimal line pressure control could reduce the hydraulic power loss, which gave a 2.2% fuel economy improvement compared to the existing line pressure control for the FTP-72 mode.

  11. Cross-Layer Approach using k-NN Based Adaptive Modulation Coding (AMC and Incremental Redundancy Hybrid Automatic Repeat Request (IR-HARQ for MIMO

    Directory of Open Access Journals (Sweden)

    J. Sofia Priya Dharshini

    2014-09-01

    Full Text Available In MIMO Technology, a cross layer design enhances the spectral efficiency, reliability and throughput of the network. In this paper, a cross-layer approach using k-NN based Adaptive Modulation Coding (AMC and Incremental Redundancy Hybrid Automatic Repeat Request (IR-HARQ is proposed for MIMO Systems. The proposed cross layer approach connects physical layer and data link layer to enhance the performance of MIMO network. By means of MIMO fading channels, the coded symbols are forwarded in the physical layer on a frame by frame fashion subsequently using Space Time Block Coding (STBC. The receiver computes the signal to noise ratio (SNR and forwards back to the AMC controller. The controller selects a suitable MCS for the next transmission through k-NN classifier supervised learning algorithm. IR-HARQ is utilized at the data link layer to regulate packet retransmissions. The obtained results prove that the proposed technique has better performance in terms of throughput, BER and spectral efficiency

  12. Genetic differentiation and inferred dynamics of a hybrid zone between Northern Spotted Owls (Strix occidentalis caurina) and California Spotted Owls (S. o. occidentalis) in northern California

    Science.gov (United States)

    Miller, Mark P.; Mullins, Tom; Forsman, Eric D.; Haig, Susan M.

    2017-01-01

    Genetic differentiation among Spotted Owl (Strix occidentalis) subspecies has been established in prior studies. These investigations also provided evidence for introgression and hybridization among taxa but were limited by a lack of samples from geographic regions where subspecies came into close contact. We analyzed new sets of samples from Northern Spotted Owls (NSO: S. o. caurina) and California Spotted Owls (CSO: S. o. occidentalis) in northern California using mitochondrial DNA sequences (mtDNA) and 10 nuclear microsatellite loci to obtain a clearer depiction of genetic differentiation and hybridization in the region. Our analyses revealed that a NSO population close to the northern edge of the CSO range in northern California (the NSO Contact Zone population) is highly differentiated relative to other NSO populations throughout the remainder of their range. Phylogenetic analyses identified a unique lineage of mtDNA in the NSO Contact Zone, and Bayesian clustering analyses of the microsatellite data identified the Contact Zone as a third distinct population that is differentiated from CSO and NSO found in the remainder of the subspecies' range. Hybridization between NSO and CSO was readily detected in the NSO Contact Zone, with over 50% of individuals showing evidence of hybrid ancestry. Hybridization was also identified among 14% of CSO samples, which were dispersed across the subspecies' range in the Sierra Nevada Mountains. The asymmetry of hybridization suggested that the hybrid zone may be dynamic and moving. Although evidence of hybridization existed, we identified no F1 generation hybrid individuals. We instead found evidence for F2 or backcrossed individuals among our samples. The absence of F1 hybrids may indicate that (1) our 10 microsatellites were unable to distinguish hybrid types, (2) primary interactions between subspecies are occurring elsewhere on the landscape, or (3) dispersal between the subspecies' ranges is reduced relative to

  13. Lambda exonuclease-based subtractive hybridization approach to isolate differentially expressed genes from leaf cultures of Paulownia kawakamii.

    Science.gov (United States)

    Low, R K; Prakash, A P; Swarup, S; Goh, C J; Kumar, P P

    2001-08-15

    Genes that are preferentially expressed in a particular developmental pathway can be isolated by subtractive hybridization (SH). We developed a PCR-based approach coupled with lambda exonuclease digestion that allows for generating single-stranded tester and driver nucleic acids suitable for SH starting from cDNA libraries. An efficient subtraction strategy was developed to overcome some of the problems in the previously described SH protocols, such as the need for large amounts of experimental tissue, RNase contamination during solution hybridization, and postsubtraction recovery of nucleic acids. We used this method to obtain cDNA corresponding to genes expressed during adventitious shoot regeneration from excised leaf cultures of the fast-growing tree Paulownia kawakamii. Over 36 cDNA clones were isolated and 1 of the differentially expressed clones codes for a leucine zipper transcription factor. This clone showed about sixfold higher level of expression in the shoot-forming tissues (tester) compared to that in the callus-forming tissues (driver) of Paulownia, suggesting that differentially expressed genes can be efficiently isolated using this simple lambda exonuclease-based subtractive hybridization method.

  14. Genomic insights into hybridization in a localized region of sympatr y between pewee sister species (Contopus sordidulus × C. virens) and their chromosomal patterns of differentiation

    Institute of Scientific and Technical Information of China (English)

    Joseph D Manthey; and Mark B Robbins

    2016-01-01

    Background: The Great Plains of the United States includes a large number of hybrid and contact zones between bird species. The amount of gene lfow between sister species in these zones ranges from very rare hybridization events to widespread and prevalent introgression. Some of these avian systems have been studied extensively, while others have been indeterminate of whether hybridization exists in areas of sympatry. Using genomic-level approaches allows investigation of genomic patterns of hybridization and gene lfow between species—or lack thereof. Methods: We investigated a narrow zone of sympatry in Nebraska, USA between pewee species (Contopus sordidu-lus and C. virens), for which no hybridization has been conifrmed. We used thousands of single nucleotide polymor-phisms to identify potential hybridization and investigate genomic patterns of differentiation between these two species. Results: We found evidence of multiple hybrid individuals in the contact zone. Little genomic variation was ifxed between species, but a large proportion had differentiated allele frequencies between species. There was a positive relationship between genetic differentiation and chromosome size. Conclusions: We provided the ifrst conclusive evidence of hybridization between C. sordidulus and C. virens, in a region where secondary contact likely occurred due to human disturbance and habitat modiifcation. The genomic patterns of differentiation affrm that these species split in the relatively recent past. Finally, the relationship of chro-mosome size and genetic differentiation may have resulted from differential rates of chromosomal recombination in songbirds and genetic differentiation between species largely due to genetic drift (possibly in concert with selection).

  15. Hybrid Differential Evolution Optimisation for Earth Observation Satellite Scheduling with Time-Dependent Earliness-Tardiness Penalties

    Directory of Open Access Journals (Sweden)

    Guoliang Li

    2017-01-01

    Full Text Available We study the order acceptance and scheduling (OAS problem with time-dependent earliness-tardiness penalties in a single agile earth observation satellite environment where orders are defined by their release dates, available processing time windows ranging from earliest start date to deadline, processing times, due dates, sequence-dependent setup times, and revenues. The objective is to maximise total revenue, where the revenue from an order is a piecewise linear function of its earliness and tardiness with reference to its due date. We formulate this problem as a mixed integer linear programming model and develop a novel hybrid differential evolution (DE algorithm under self-adaptation framework to solve this problem. Compared with classical DE, hybrid DE employs two mutation operations, scaling factor adaptation and crossover probability adaptation. Computational tests indicate that the proposed algorithm outperforms classical DE in addition to two other variants of DE.

  16. Assortative mating and differential male mating success in an ash hybrid zone population

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    Frascaria-Lacoste Nathalie

    2006-11-01

    Full Text Available Abstract Background The structure and evolution of hybrid zones depend mainly on the relative importance of dispersal and local adaptation, and on the strength of assortative mating. Here, we study the influence of dispersal, temporal isolation, variability in phenotypic traits and parasite attacks on the male mating success of two parental species and hybrids by real-time pollen flow analysis. We focus on a hybrid zone population between the two closely related ash species Fraxinus excelsior L. (common ash and F. angustifolia Vahl (narrow-leaved ash, which is composed of individuals of the two species and several hybrid types. This population is structured by flowering time: the F. excelsior individuals flower later than the F. angustifolia individuals, and the hybrid types flower in-between. Hybrids are scattered throughout the population, suggesting favorable conditions for their local adaptation. We estimate jointly the best-fitting dispersal kernel, the differences in male fecundity due to variation in phenotypic traits and level of parasite attack, and the strength of assortative mating due to differences in flowering phenology. In addition, we assess the effect of accounting for genotyping error on these estimations. Results We detected a very high pollen immigration rate and a fat-tailed dispersal kernel, counter-balanced by slight phenological assortative mating and short-distance pollen dispersal. Early intermediate flowering hybrids, which had the highest male mating success, showed optimal sex allocation and increased selfing rates. We detected asymmetry of gene flow, with early flowering trees participating more as pollen donors than late flowering trees. Conclusion This study provides striking evidence that long-distance gene flow alone is not sufficient to counter-act the effects of assortative mating and selfing. Phenological assortative mating and short-distance dispersal can create temporal and spatial structuring that appears

  17. Enhancement of chondrogenic differentiation of rabbit mesenchymal stem cells by oriented nanofiber yarn-collagen type I/hyaluronate hybrid

    Energy Technology Data Exchange (ETDEWEB)

    Zheng, Xianyou; Wang, Wei; Liu, Shen [Department of Orthopaedics, Shanghai Jiao Tong University Affiliated Sixth People' s Hospital, 600 Yishan Road, Shanghai 200233 (China); Wu, Jinglei [Biomaterials and Tissue Engineering Laboratory, College of Chemistry and Chemical Engineering and Biological Engineering, Donghua University, Shanghai 201620 (China); Li, Fengfeng [Department of Orthopaedics, Shanghai Jiao Tong University Affiliated Sixth People' s Hospital, 600 Yishan Road, Shanghai 200233 (China); Cao, Lei [Shanghai Key Laboratory of Orthopaedic Implants, Department of Orthopaedics, Shanghai Ninth People' s Hospital, Shanghai Jiao Tong University School of Medicine, 639 Zhizaoju Road, Shanghai 200011 (China); Liu, Xu-dong [Department of Orthopaedics, Shanghai Jiao Tong University Affiliated Sixth People' s Hospital, 600 Yishan Road, Shanghai 200233 (China); Mo, Xiumei, E-mail: xmm@dhu.edu.cn [Biomaterials and Tissue Engineering Laboratory, College of Chemistry and Chemical Engineering and Biological Engineering, Donghua University, Shanghai 201620 (China); Fan, Cunyi, E-mail: fancunyish@126.com [Department of Orthopaedics, Shanghai Jiao Tong University Affiliated Sixth People' s Hospital, 600 Yishan Road, Shanghai 200233 (China)

    2016-01-01

    Cartilage defects cause joint pain and loss of mobility. It is crucial to induce the chondrogenic differentiation of bone marrow mesenchymal stem cells (BMSCs) by both biological and structural signals in cartilage tissue engineering. Sponge-like scaffolds fabricated using native cartilage extracellular matrix components can induce the BMSC differentiation by biological signals and limited structural signals. In this study, an oriented poly(L-lactic acid)-co-poly(ε-caprolactone) P(LLA-CL)/collagen type I (Col-I) nanofiber yarn mesh, fabricated by dynamic liquid electrospinning served as a skeleton for a freeze-dried Col-I/hyaluronate (HA) chondral phase (SPONGE) containing both structural and biological signals to guide BMSC chondrogenic differentiation. In vitro results show that the Yarn Col-I/HA hybrid scaffold (Yarn-CH) promotes orientation, adhesion and proliferation of BMSCs better than SPONGE. Furthermore, BMSCs seeded on the Yarn-CH scaffold demonstrated a large increase in the glycosaminoglycan content and expression of collagen type II following a 21-day culture. - Highlights: • An oriented yarn was used as the skeleton of the sponge-like scaffold. • Both structural and biological signals were given for BMSC chondrogenic differentiation. • Yarn-CH promotes orientation and chondrogenesis differentiation of BMSCs. • Yarn-CH reproduces the superficial zone of the cartilage.

  18. Hybrid imaging (SPECT/CT, PET/CT) in differentiated thyroid cancer; Imagerie hybride (TEMP/TDM, TEP/TDM) et cancer differencie de la thyroide

    Energy Technology Data Exchange (ETDEWEB)

    Bardet, S.; Ciappuccini, R.; Aide, N. [Unite de concertation pluridisciplinaire thyroide, service de medecine nucleaire, centre Francois-Baclesse, 14 - Caen (France); Barraux, V. [Unite de radiophysique, centre Francois-Baclesse, 14 - Caen (France); Rame, J.P. [Chirurgie ORL, centre Francois-Baclesse, 14 - Caen (France)

    2010-08-15

    Differentiated thyroid cancer (DTC) is generally associated with a good prognosis. Local recurrences, mainly lymph-node involvement, account for 15-20% of cases and are surgically treated. Distant metastases, mostly in lungs and more rarely in bones, are present in 5% of patients. When iodine uptake is sufficient (in approximately 60% of patients), distant metastases can be destroyed by iterative activities of iodine 131. Serum thyroglobulin (Tg), which can be assessed either on hormonal treatment or on TSH stimulation is considered as the tumour marker in DTC. Functional (iodine 131 scintigraphy, FDG PET, bone scintigraphy) or anatomical (neck ultrasound, thoracic CT, bone MRI) imaging methods can be performed when Tg increases in order to show residual/recurrent disease. In recent years, new hybrid equipments integrating both a gamma camera and CT scan (SPECT/CT) have been commercialized while positron emission tomography cameras associated with CT (PET/CT) have been installed on the whole French territory. These equipments, which allow us to directly correlate functional and anatomical images, greatly improve the interpretation of planar scintigraphy or that of PET alone. Hybrid imaging enables us to precisely localize scintigraphic foci and most often, to immediately verify whether they correspond to tumour lesions. The aim of this article is to review the role of SPECT/CT and PET/CT in the management of patients with DTC in 2010. (authors)

  19. A Hybrid Algorithm Based on Differential Evolution and Group Search Optimization and Its Application on Ethylene Cracking Furnace

    Institute of Scientific and Technical Information of China (English)

    NIAN Xiaoyu; WANG Zhenlei; QIAN Feng

    2013-01-01

    To find the optimal operational condition when the properties of feedstock changes in the cracking furnace online,a hybrid algorithm named differential evolution group search optimization (DEGSO) is proposed,which is based on the differential evolution (DE) and the group search optimization (GSO).The DEGSO combines the advantages of the two algorithms:the high computing speed of DE and the good performance of the GSO for preventing the best particle from converging to local optimum.A cooperative method is also proposed for switching between these two algorithms.If the fitness value of one algorithm keeps invariant in several generations and less than the preset threshold,it is considered to fall into the local optimization and the other algorithm is chosen.Experiments on benchmark functions show that.the hybrid algorithm outperforms GSO in accuracy,global searching ability and efficiency.The optimization of ethylene and propylene yields is illustrated as a case by DEGSO.After optimization,the yield of ethylene and propylene is increased remarkably,which provides the proper operational condition of the ethylene cracking furnace.

  20. An improved chaotic hybrid differential evolution for the short-term hydrothermal scheduling problem considering practical constraints

    Institute of Scientific and Technical Information of China (English)

    Tahir Nadeem MALIK; Salman ZAFAR; Saaqib HAROON

    2015-01-01

    Short-term hydrothermal scheduling (STHTS) is a non-linear and complex optimization problem with a set of oper-ational hydraulic and thermal constraints. Earlier, this problem has been addressed by several classical techniques;however, due to limitations such as non-linearity and non-convexity in cost curves, artificial intelligence tools based techniques are being used to solve the STHTS problem. In this paper an improved chaotic hybrid differential evolution (ICHDE) algorithm is proposed to find an optimal solution to this problem taking into account practical constraints. A self-adjusted parameter setting is obtained in differential evolution (DE) with the application of chaos theory, and a chaotic hybridized local search mechanism is embedded in DE to effectively prevent it from premature convergence. Furthermore, heuristic constraint handling techniques without any penalty factor setting are adopted to handle the complex hydraulic and thermal constraints. The superiority and effectiveness of the developed methodology are evaluated by its application in two illustrated hydrothermal test systems taken from the literature. The transmission line losses, prohibited discharge zones of hydel plants, and ramp rate limits of thermal plants are also taken into account. The simulation results reveal that the proposed technique is competent to produce an encouraging solution as com-pared with other recently established evolutionary approaches.

  1. Differential gene expression in an elite hybrid rice cultivar (Oryza sativa, L and its parental lines based on SAGE data

    Directory of Open Access Journals (Sweden)

    Chen Chen

    2007-09-01

    Full Text Available Abstract Background It was proposed that differentially-expressed genes, aside from genetic variations affecting protein processing and functioning, between hybrid and its parents provide essential candidates for studying heterosis or hybrid vigor. Based our serial analysis of gene expression (SAGE data from an elite Chinese super-hybrid rice (LYP9 and its parental cultivars (93-11 and PA64s in three major tissue types (leaves, roots and panicles at different developmental stages, we analyzed the transcriptome and looked for candidate genes related to rice heterosis. Results By using an improved strategy of tag-to-gene mapping and two recently annotated genome assemblies (93-11 and PA64s, we identified 10,268 additional high-quality tags, reaching a grand total of 20,595 together with our previous result. We further detected 8.5% and 5.9% physically-mapped genes that are differentially-expressed among the triad (in at least one of the three stages with P-values less than 0.05 and 0.01, respectively. These genes distributed in 12 major gene expression patterns; among them, 406 up-regulated and 469 down-regulated genes (P Conclusion We improved tag-to-gene mapping strategy by combining information from transcript sequences and rice genome annotation, and obtained a more comprehensive view on genes that related to rice heterosis. The candidates for heterosis-related genes among different genotypes provided new avenue for exploring the molecular mechanism underlying heterosis.

  2. Porous polylactic acid-silica hybrids: preparation, characterization, and study of mesenchymal stem cell osteogenic differentiation.

    Science.gov (United States)

    Pandis, Christos; Trujillo, Sara; Matos, Joana; Madeira, Sara; Ródenas-Rochina, Joaquín; Kripotou, Sotiria; Kyritsis, Apostolos; Mano, João F; Gómez Ribelles, José Luis

    2015-02-01

    A novel approach to reinforce polymer porous membranes is presented. In the prepared hybrid materials, the inorganic phase of silica is synthesized in-situ and inside the pores of aminolyzed polylactic acid (PLA) membranes by sol-gel reactions using tetraethylorthosilicate (TEOS) and glycidoxypropyltrimethoxysilane (GPTMS) as precursors. The hybrid materials present a porous structure with a silica layer covering the walls of the pores while GPTMS serves also as coupling agent between the organic and inorganic phase. The adjustment of silica precursors ratio allows the modulation of the thermomechanical properties. Culture of mesenchymal stem cells on these supports in osteogenic medium shows the expression of characteristic osteoblastic markers and the mineralization of the extracellular matrix.

  3. Automatic differentiation method for numerical construction of the rotational-vibrational Hamiltonian as a power series in the curvilinear internal coordinates using the Eckart frame.

    Science.gov (United States)

    Yachmenev, Andrey; Yurchenko, Sergei N

    2015-07-07

    We present a new numerical method to construct a rotational-vibrational Hamiltonian of a general polyatomic molecule in the Eckart frame as a power series expansion in terms of curvilinear internal coordinates. The expansion of the kinetic energy operator of an arbitrary order is obtained numerically using an automatic differentiation (AD) technique. The method is applicable to molecules of arbitrary size and structure and is flexible for choosing various types of internal coordinates. A new way of solving the Eckart-frame equations for curvilinear coordinates also based on the AD technique is presented. The resulting accuracy of the high-order expansion coefficients for the kinetic energy operator using our numerical technique is comparable to that obtained by symbolic differentiation, with the advantage of being faster and less demanding in memory. Examples for H2CO, NH3, PH3, and CH3Cl molecules demonstrate the advantages of the curvilinear internal coordinates and the Eckart molecular frame for accurate ro-vibrational calculations. Our results show that very high accuracy and quick convergence can be achieved even with moderate expansions if curvilinear coordinates are employed, which is important for applications involving large polyatomic molecules.

  4. Automatic differentiation method for numerical construction of the rotational-vibrational Hamiltonian as a power series in the curvilinear internal coordinates using the Eckart frame

    Science.gov (United States)

    Yachmenev, Andrey; Yurchenko, Sergei N.

    2015-07-01

    We present a new numerical method to construct a rotational-vibrational Hamiltonian of a general polyatomic molecule in the Eckart frame as a power series expansion in terms of curvilinear internal coordinates. The expansion of the kinetic energy operator of an arbitrary order is obtained numerically using an automatic differentiation (AD) technique. The method is applicable to molecules of arbitrary size and structure and is flexible for choosing various types of internal coordinates. A new way of solving the Eckart-frame equations for curvilinear coordinates also based on the AD technique is presented. The resulting accuracy of the high-order expansion coefficients for the kinetic energy operator using our numerical technique is comparable to that obtained by symbolic differentiation, with the advantage of being faster and less demanding in memory. Examples for H2CO, NH3, PH3, and CH3Cl molecules demonstrate the advantages of the curvilinear internal coordinates and the Eckart molecular frame for accurate ro-vibrational calculations. Our results show that very high accuracy and quick convergence can be achieved even with moderate expansions if curvilinear coordinates are employed, which is important for applications involving large polyatomic molecules.

  5. Applications of Suppression Subtractive Hybridization (SSH) in Identifying differentially expressed transcripts in Ascochyta rabiei

    Science.gov (United States)

    Introduction – Ascochyta rabiei, casual agents of chickpea ascochyta blight, is divided into two pathotypes based on virulence levels. Genetic mechanisms of this phenotypic differentiation are poorly understood. This research is directed toward understanding molecular differences between the two pa...

  6. Analysis and characterization of differential gene expression during rapid trophoblastic elongation in the pig using suppression subtractive hybridization

    Directory of Open Access Journals (Sweden)

    Malayer Jerry R

    2003-02-01

    Full Text Available Abstract During late peri-implantation development, porcine conceptuses undergo a rapid (2–3 hrs morphological transformation from a 10 mm sphere to a thin filamentous form greater than 150 mm in length. Elongation of the conceptus is important for establishing adequate placental surface area needed for embryo and fetal survival throughout gestation. Genes involved with triggering this unique transition in conceptus development are not well defined. Objective of the present study was to utilize suppression subtractive hybridization (SSH to characterize the change in gene expression during conceptus transformation from spherical (8–9 mm to tubular (15–40 mm to early filamentous (>150 mm morphology. Spherical, tubular, and filamentous conceptuses were collected from pregnant gilts and subjected to SSH. Forward and reverse subtractions were performed to identify candidate genes differentially expressed during spherical to tubular and tubular to filamentous transition. A total of 384 transcripts were differentially screened to ensure unique expression. Of the transcripts screened, sequences were obtained for 142 that were confirmed to be differentially expressed among the various morphologies. Gene expression profiles during rapid trophoblastic elongation were generated for selected mRNAs using quantitative real-time PCR. During the transition from tubular to early filamentous conceptuses, s-adenosylhomocysteine hydrolase and heat shock cognate 70 kDa expression were significantly enhanced. A novel unknown gene was isolated and shown to be significantly up-regulated at the onset of rapid trophoblastic elongation and further enhanced in filamentous conceptuses.

  7. Screening differentially expressed genes in an amphipod (Hyalella azteca) exposed to fungicide vinclozolin by suppression subtractive hybridization.

    Science.gov (United States)

    Wu, Yun H; Wu, Tsung M; Hong, Chwan Y; Wang, Yei S; Yen, Jui H

    2014-01-01

    Vinclozolin, a dicarboximide fungicide, is an endocrine disrupting chemical that competes with an androgenic endocrine disruptor compound. Most research has focused on the epigenetic effect of vinclozolin in humans. In terms of ecotoxicology, understanding the effect of vinclozolin on non-target organisms is important. The expression profile of a comprehensive set of genes in the amphipod Hyalella azteca exposed to vinclozolin was examined. The expressed sequence tags in low-dose vinclozolin-treated and -untreated amphipods were isolated and identified by suppression subtractive hybridization. DNA dot blotting was used to confirm the results and establish a subtracted cDNA library for comparing all differentially expressed sequences with and without vinclozolin treatment. In total, 494 differentially expressed genes, including hemocyanin, heatshock protein, cytochrome, cytochrome oxidase and NADH dehydrogenase were detected. Hemocyanin was the most abundant gene. DNA dot blotting revealed 55 genes with significant differential expression. These genes included larval serum protein 1 alpha, E3 ubiquitin-protein ligase, mitochondrial cytochrome c oxidase, mitochondrial protein, proteasome inhibitor, hemocyanin, zinc-finger-containing protein, mitochondrial NADH-ubiquinone oxidoreductase and epididymal sperm-binding protein. Vinclozolin appears to upregulate stress-related genes and hemocyanin, related to immunity. Moreover, vinclozolin downregulated NADH dehydrogenase, related to respiration. Thus, even a non-lethal concentration of vinclozolin still has an effect at the genetic level in H. azteca and presents a potential risk, especially as it would affect non-target organism hormone metabolism.

  8. Effect of Environment and Genetic Recombination on Subspecies and Economic Trait Differentiation in the F2 and F3 Generations from indica-japonica Hybridization

    Institute of Scientific and Technical Information of China (English)

    WANG He-tong; XU Zheng-jin; JIN Feng; JIANG Yi-jun; LIN Qing-shan; XU Hai; CHENG Ling; XIA Ying-jun; LIU Chun-xiang; CHEN Wen-fu

    2014-01-01

    indica and japonica are the two most important subspecies of Asian cultivated rice. Identifying mechanisms responsible for population differentiation in these subspecies is important for indica-japonica hybridization breeding. In this study, subspecies and economic trait differentiation patterns were analyzed using morphological and molecular (InDel and Intron Length Polymorphism) data in F2 and F3 populations derived from indica-japonica hybridization. Populations were grown in Liaoning and Guangdong provinces, China, with F3 populations generated from F2 populations using bulk harvesting (BM) and single-seed descent methods (SSD). Segregation distortion was detected in F3-BM populations, but not in F3-SSD or in F2 populations. Superior performance was observed with respect to economic traits in Liaoning compared with that in Guangdong and 1 000-grain weight (KW), seed setting rate (SSR) and grain yield per plant (GYP) were signiifcantly correlated with indica and japonica subspecies types. Analysis of molecular and morphological data demonstrated that the environment is the main factor giving rise to population differentiation in indica-japonica hybridization. In addition, we also found that KW, SSR and GYP are related to subspecies characteristics and kinship, which is possibly a signiifcant factor resulting in economic trait differentiation and determining environmental adaptability. Our study has provided new insights into the process of population differentiation in these subspecies to inform indica-japonica hybridization breeding.

  9. Survey on the differentiation of consumption in various types of automatic wood burners; Erhebung Verbrauchssplitting bei automatischen Holzfeuerungen

    Energy Technology Data Exchange (ETDEWEB)

    Primas, A.; Kistler, M.; Kessler, F.

    2006-07-01

    This final report published by the Swiss Federal Office of Energy (SFOE) takes a look at how statistics on wood-consumption can be differentiated to take various types of wood-fired heating systems into consideration. The approach used, which involved the taking of 1200 random samples from a total of 5200 installations, is described. Figures are presented on the return-quotients reached. The questionnaires returned were sorted according to the types of installation, such as industrial/commercial, farming, services and household. As a result of the high return-rate, the accuracy of the estimates based on the data is also considered to be high. The paper describes how the survey was made and how the results were obtained from the data collected. Details on operation, types of fuel, specific consumption and factors influencing operation are presented in graphical form. An appendix presents the data collected in tabular form.

  10. Microgeographic allozyme differentiation in the hybrid zone of Mytilus galloprovincialis Lmk. and M. edulis L. on the continental European coast

    Science.gov (United States)

    Comesaña, A. S.; Sanjuan, A.

    1997-03-01

    The European Mytilus galloprovincialis Lmk. and M. edulis L. coexist and hybridize in different proportions in extended areas of the British and Atlantic French coasts. M. galloprovincialis typical allozymes seem to predominate in wave exposed areas, at high levels of attachment and in larger mussels in the British hybrid zone. Mussel samples from exposed and sheltered areas, 200 m apart, and from high and low levels of attachment were collected from a location of the French hybrid zone in 1988 92. Pure M. galloprovincialis and M. edulis populations were also taken as controls. Diagnostic enzyme loci for both Mytilus (EST-D *, LAP-1*, MPI*, ODH*) and AP-1 *, LAP-2* and PGM * loci were studied. The frequencies of the M. galloprovincialis typical alleles were significantly greater in exposed populations than in sheltered samples (e.g. 0.729 to 0.803 vs 0.192 to 0.581 for EST-D *90), and at high level of attachment than at low level for the sheltered area (e.g. 0.581 vs 0.192 for EST-D *90). Putative M. galloprovincialis was more abundant on the exposed coast (0.591 and 0.702) than on the sheltered shore, where it predominated at the high shore but not at the low shore location (0.371 vs 0.045). Significantly positive correlations between shell length and typical M. galloprovincialis compound allele frequencies were found only for populations from exposed areas. Relationships between the Mytilus genetic differentiation and ecological factors are discussed.

  11. Negative differential transconductance in silicon quantum well metal-oxide-semiconductor field effect/bipolar hybrid transistors

    Energy Technology Data Exchange (ETDEWEB)

    Naquin, Clint; Lee, Mark [Department of Physics, University of Texas at Dallas, Richardson, Texas 75080 (United States); Edwards, Hal; Mathur, Guru; Chatterjee, Tathagata; Maggio, Ken [Texas Instruments, Inc., Richardson, Texas 75243 (United States)

    2014-11-24

    Introducing explicit quantum transport into Si transistors in a manner amenable to industrial fabrication has proven challenging. Hybrid field-effect/bipolar Si transistors fabricated on an industrial 45 nm process line are shown to demonstrate explicit quantum transport signatures. These transistors incorporate a lateral ion implantation-defined quantum well (QW) whose potential depth is controlled by a gate voltage (V{sub G}). Quantum transport in the form of negative differential transconductance (NDTC) is observed to temperatures >200 K. The NDTC is tied to a non-monotonic dependence of bipolar current gain on V{sub G} that reduces drain-source current through the QW. These devices establish the feasibility of exploiting quantum transport to transform the performance horizons of Si devices fabricated in an industrially scalable manner.

  12. Early differentiation in biomass production and carbon sequestration of white poplar and its two hybrids in Central Iran

    Institute of Scientific and Technical Information of China (English)

    Hormoz Sohrabi; Mohammad Kazem Parsapour; Ali Soltani; Yaghoub Iranmanesh

    2015-01-01

    We assessed the potential of white poplar (Populus alba L.) and its inter-sectional hybridization with euphrates poplar (P. euphratica Oliv.) for carbon storage and sequestration in central Iran. Trials were established at planting density of 2,500 trees per hectare in block ran-domized design with three replicates. After 6 years, we measured the above-ground biomass of tree components (trunk, branch, bark, twig and leaf), and assessed soil carbon at three depths. P. alba × euphratica plantation stored significantly more carbon (22.3 t ha-1) than P. alba (16.7 t ha-1) and P. euphratica × alba (13.1 t ha-1). Most of the carbon was accumulated in the above-ground biomass (61.1%in P. alba, 72.4%in P. alba × euphra-tica and 56.0% in P. euphratica × alba). There was no significant difference in soil carbon storage. Also, biomass allocation was different between white poplar P. alba and its inter-sectional hybridization. Therefore, there was a yield difference due to genomic imprinting, which increased the possibility that paternally and maternally inherited wood production alleles would be differentially expressed in the new crossing.

  13. Hybrid Differential Evolution with Biogeography-Based Optimization for Design of a Reconfigurable Antenna Array with Discrete Phase Shifters

    Directory of Open Access Journals (Sweden)

    Xiangtao Li

    2011-01-01

    Full Text Available Multibeam antenna arrays have important applications in communications and radar. This paper presents a new method of designing a reconfigurable antenna with quantized phase excitations using a new hybrid algorithm, called DE/BBO. The reconfigurable design problem is to find the element excitation that will result in a sector pattern main beam with low sidelobes with additional requirement that the same excitation amplitudes applied to the array with zero-phase should be in a high directivity, low sidelobe pencil-shaped main beam. In order to reduce the effect of mutual coupling between the antenna-array elements, the dynamic range ratio is minimized. Additionally, compared with the continuous realization and subsequent quantization, experimental results indicate that the performance of the discrete realization of the phase excitation value can be improved. In order to test the performances of hybrid differential evolution with biogeography-based optimization, the results of some state-of-art algorithms are considered, for the purposed of comparison. Experiment results indicate the better performance of the DE/BBO.

  14. Identification of differentially expressed genes in rat silicosis model by suppression subtractive hybridization analysis

    Institute of Scientific and Technical Information of China (English)

    Zhongyuan Jin; Chunyan Fu; Jifang Wen; Baoan Liu; Deyun Feng; Chen Chen; Xiang Li; Yongbin Hu; Jinwu Peng; Yu Liu; Jing Du

    2008-01-01

    The critical molecular mechanism in the development of the pulmonary fibrosis remains unknown, leaving diagnosed patients with a poor prognosis. To isolate the genes specifi-cally up-regulated in pulmonary fibrosis, we established a rat silicosis model 360 d after treatment with crystalline silica suspension. Radiographs of chests showed that some scattered high-density shadows appeared in the lung field.Typical microscopic fibrosing silicotic nodules formed in the lung,alveolar epithelial cells and bronchial epithelial cells,particularly around the partial fibrosing silicotic nodules;some of them showed atypical hyperplasia that suggested a correlation between silicosis and lung cancer.Suppression subtractive hybridization analysis was performed to compare gene expression in lung tissue with silicosis and normal lung tissue.Reverse transcription-polymerase chain rection showed that the expressions of seven novel cDNA sequences identified by suppression subtractive hybridization in lung tissue with silicosis differed from normal lung tissue. Bioinformatics analysis showed that 47 positive clones rep-resented 35 genes containing two putative proteins and four predicted similar proteins.The analysis also showed that some screened genes in silicosis,such as prolyl 4-hydroxylases,actin-related protein-2/3 complex and acidic mammalian chitinase,have not been previously reported.These genes may provide new clues for investigating the molecular mechanisms in the development of pulmonary fibrosis.

  15. Isolation of differentially expressed sex genes in garden asparagus using suppression subtractive hybridization.

    Science.gov (United States)

    Deng, Chuan-liang; Wang, Ning-na; Li, Shu-fen; Dong, Tian-yu; Zhao, Xin-peng; Wang, Shao-jing; Gao, Wu-jun; Lu, Long-dou

    2015-09-01

    Garden asparagus (Asparagus officinalis L.) is a dioecious species whose male and female flowers are found in separate unisexual individuals. A region called the M-locus, located on a pair of homomorphic sex chromosomes, controls sexual dimorphism in asparagus. To date, no sex determining gene has been isolated from asparagus. To identify more genes involved in flower development in asparagus, subtractive hybridization library of male flowers in asparagus was constructed by suppression subtraction hybridization. A total of 107 expressed sequence tags (ESTs) were identified. BLASTX analysis showed that the library contained several genes that could be related to flower development. The expression patterns of seven selected genes believed to be involved in the development of asparagus male flower were further analyzed by semi-quantitative or real-time reverse-transcription polymerase chain reaction (RT-PCR). Results showed that AOEST4-5, AOEST12-40, and AOEST13-38 were strongly expressed in the male flower stage, whereas no transcript level of AOEST13-38 was detected in the female flower stage. The expression levels of AOEST13-87, AOEST13-92, AOEST13-40, and AOEST18-87 in the male flower stage were also higher than those in the female flower stage, although these transcripts were also expressed in other tissues. The identified genes can provide a strong starting point for further studies on the underlying molecular differences between the male and female flowers of asparagus.

  16. Automatic sequences

    CERN Document Server

    Haeseler, Friedrich

    2003-01-01

    Automatic sequences are sequences which are produced by a finite automaton. Although they are not random they may look as being random. They are complicated, in the sense of not being not ultimately periodic, they may look rather complicated, in the sense that it may not be easy to name the rule by which the sequence is generated, however there exists a rule which generates the sequence. The concept automatic sequences has special applications in algebra, number theory, finite automata and formal languages, combinatorics on words. The text deals with different aspects of automatic sequences, in particular:· a general introduction to automatic sequences· the basic (combinatorial) properties of automatic sequences· the algebraic approach to automatic sequences· geometric objects related to automatic sequences.

  17. Suppression subtractive hybridization coupled with microarray analysis to examine differential expression of genes in virus infected cells

    Directory of Open Access Journals (Sweden)

    Munir Shirin

    2004-01-01

    Full Text Available High throughput detection of differential expression of genes is an efficient means of identifying genes and pathways that may play a role in biological systems under certain experimental conditions. There exist a variety of approaches that could be used to identify groups of genes that change in expression in response to a particular stimulus or environment. We here describe the application of suppression subtractive hybridization (SSH coupled with cDNA microarray analysis for isolation and identification of chicken transcripts that change in expression on infection of host cells with a paramyxovirus. SSH was used for initial isolation of differentially expressed transcripts, a large-scale validation of which was accomplished by microarray analysis. The data reveals a large group of regulated genes constituting many biochemical pathways that could serve as targets for future investigations to explore their role in paramyxovirus pathogenesis. The detailed methods described herein could be useful and adaptable to any biological system for studying changes in gene expression.

  18. Gene expression profiling of osteoclast differentiation by combined suppression subtractive hybridization (SSH) and cDNA microarray analysis.

    Science.gov (United States)

    Rho, Jaerang; Altmann, Curtis R; Socci, Nicholas D; Merkov, Lubomir; Kim, Nacksung; So, Hongseob; Lee, Okbok; Takami, Masamichi; Brivanlou, Ali H; Choi, Yongwon

    2002-08-01

    Bone homeostasis is maintained by the balanced action of bone-forming osteoblasts and bone-resorbing osteoclasts. Multinucleated, mature osteoclasts develop from hematopoietic stem cells via the monocyte-macrophage lineage, which also give rise to macrophages and dendritic cells. Despite their distinct physiologic roles in bone and the immune system, these cell types share many molecular and biochemical features. To provide insights into how osteoclasts differentiate and function to control bone metabolism, we employed a systematic approach to profile patterns of osteoclast-specific gene expression by combining suppression subtractive hybridization (SSH) and cDNA microarray analysis. Here we examined how gene expression profiles of mature osteoclast differ from macrophage or dendritic cells, how gene expression profiles change during osteoclast differentiation, and how Mitf, a transcription factor critical for osteoclast maturation, affects the gene expression profile. This approach revealed a set of genes coordinately regulated for osteoclast function, some of which have previously been implicated in several bone diseases in humans.

  19. Isoenzymatic differentiation in putative hybrid swarm population (Pinus mugo Turra x P. sylvestris L. from "Torfowisko Zieleniec" peat-bog

    Directory of Open Access Journals (Sweden)

    Anna Siedlewska

    2014-01-01

    Full Text Available Isoenzyme variability of eight groups of individuals from different parts of putative hybrid swarm population (P. mugo Turra x P. sylvestris L. from "Torfowisko Zieleniec" peat-bog complex was studied at ten enzymatic loci. Differences in allelic frequencies distribution among particular samples of the Zieleniec population were statistically significant at 9 loci, as shown by G2- statistics. Chi-square test indicated that in each of studied subpopulations frequencies of alleles at some loci (2-5 differed significantly from frequencies expected for a homogeneous population. Heterozygosity values and also a genotypic polymorphism in studied population confirmed the existence of large genetic variation. Wright's fixation indices (F showed some excess of homozygotes in majority studied groups of individuals, notably higher in some subpopulations. Gene diversity coefficient for 8 subpopulations was high (GST=9.4%. However, when MDH C locus was excluded from the calculation, its value decreased to 2.8%. Presented data demonstrated notable differentiation of subpopulations within studied pine population, comparable with the differentiation among different populations of coniferous species.

  20. Differentially-expressed genes identified by suppression subtractive hybridization in the bone marrow hematopoietic stem cells of patients with psoriasis.

    Science.gov (United States)

    Zhang, Zhenying; Yu, Zhen; Tian, Pan; Hou, Suchun; Han, Shixin; Tan, Xuejing; Piao, Yongjun; Liu, Xiaoming

    2014-07-01

    Psoriasis is a T cell-mediated, chronic, relapsing and inflammatory cutaneous disorder. The dysfunctional activity of T cells in patients with psoriasis is attributed to bone marrow hematopoietic stem cells (BMHSCs). To understand the pathogenic roles of BMHSCs in psoriasis, a differential gene expression analysis was performed using suppression subtractive hybridization of the BMHSCs from a patient with psoriasis and a healthy control. Using a cDNA array dot blot screening to screen 600 genes from forward- and reverse-subtracted cDNA libraries, 17 differentially-expressed sequence tags (ESTs) were identified. The genes within the ESTs were observed to be the homologs of genes that are involved in various cellular processes, including hormone signaling, RNA catabolism, protein ADP DNA base melting, transcriptional regulation, cell cycle regulation and metabolism. CD45, which was overexpressed in the psoriatic BMHSCs, was further analyzed using relative quantitative polymerase chain reaction. In addition, the levels of CD45 in the peripheral blood cells (PBCs) of the patients with psoriasis were markedly increased and closely associated with disease severity. An abnormality of hematopoietic progenitor cells, e.g., CD45 overexpression, may be transferred to PBCs via hematopoiesis, and may account for the psoriasis-inducing properties of activated T cells.

  1. Identification of differentially expressed genes in pistils from self-incompatible Citrus reticulata by suppression subtractive hybridization.

    Science.gov (United States)

    Miao, Hongxia; Qin, Yonghua; da Silva, Jaime A Teixeira; Ye, Zixing; Hu, Guibing

    2013-01-01

    Self-incompatibility (SI) is one important factor that can result in Citrus seedlessness. However, the molecular mechanism of SI in Citrus is not clear yet. To isolate the pistil's SI-related genes, a suppression subtractive hybridization library was constructed using mature pistils of 'Wuzishatangju' mandarin (SI) as the tester and mature pistils of 'Shatangju' mandarin (self-compatibility, SC) as the driver. 229 differentially expressed cDNA clones from 967 positive clones were sequenced and identified. Differentially expressed ESTs are possibly involved in the SI reaction of 'Wuzishatangju' through a regulating signaling pathway, serine/threonine phosphatase activity, receptor kinase, embryonic development, gibberellin stimulus, or transcription. 11 out of 36 SI candidate genes displayed different expression patterns in various tissues and stages after self- and cross-pollination of 'Wuzishatangju'. The expression of CaBP (WY65), a senescence-protease (WY372), an unknown gene (WY283), and a WRKY (WY17) were up-regulated in the styles of 'Wuzishatangju' while higher expression of WY190 was observed in styles of 'Shatangju'. Highest expression levels of WY65, WY372, an annexin (WY598), the zinc-finger protein (WY376), a C2-protein (WY291), and an unknown gene (WY318) were detected in styles at 3 days after self-pollination of 'Wuzishatangju' while lowest levels were observed in styles at 3 days after cross-pollination of 'Wuzishatangju' × 'Shatangju'. The potential involvement of these genes in the SI reaction is discussed.

  2. Identification and Cloning of Differentially Expressed SOUL and ELIP Genes in Saffron Stigmas Using a Subtractive Hybridization Approach

    Science.gov (United States)

    Ahrazem, Oussama; Argandoña, Javier; Castillo, Raquel; Rubio-Moraga, Ángela

    2016-01-01

    Using a subtractive hybridization approach, differentially expressed genes involved in the light response in saffron stigmas were identified. Twenty-two differentially expressed transcript-derived fragments were cloned and sequenced. Two of them were highly induced by light and had sequence similarity to early inducible proteins (ELIP) and SOUL heme-binding proteins. Using these sequences, we searched for other family members expressed in saffron stigma. ELIP and SOUL are represented by small gene families in saffron, with four and five members, respectively. The expression of these genes was analyzed during the development of the stigma and in light and dark conditions. ELIP transcripts were detected in all the developmental stages showing much higher expression levels in the developed stigmas of saffron and all were up-regulated by light but at different levels. By contrast, only one SOUL gene was up-regulated by light and was highly expressed in the stigma at anthesis. Both the ELIP and SOUL genes induced by light in saffron stigmas might be associated with the structural changes affecting the chromoplast of the stigma, as a result of light exposure, which promotes the development and increases the number of plastoglobules, specialized in the recruitment of specific proteins, which enables them to act in metabolite synthesis and disposal under changing environmental conditions and developmental stages. PMID:28030614

  3. Hybridizing grey wolf optimization with differential evolution for global optimization and test scheduling for 3D stacked SoC

    Institute of Scientific and Technical Information of China (English)

    Aijun Zhu; Chuanpei Xu; Zhi Li; Jun Wu; Zhenbing Liu

    2015-01-01

    A new meta-heuristic method is proposed to enhance current meta-heuristic methods for global optimization and test scheduling for three-dimensional (3D) stacked system-on-chip (SoC) by hybridizing grey wolf optimization with differential evo-lution (HGWO). Because basic grey wolf optimization (GWO) is easy to fal into stagnation when it carries out the operation of at-tacking prey, and differential evolution (DE) is integrated into GWO to update the previous best position of grey wolf Alpha, Beta and Delta, in order to force GWO to jump out of the stagnation with DE’s strong searching ability. The proposed algorithm can accele-rate the convergence speed of GWO and improve its performance. Twenty-three wel-known benchmark functions and an NP hard problem of test scheduling for 3D SoC are employed to verify the performance of the proposed algorithm. Experimental results show the superior performance of the proposed algorithm for exploiting the optimum and it has advantages in terms of exploration.

  4. Multi-Input Single Output SSSC based damping controller design by a hybrid Improved Differential Evolution-Pattern Search approach.

    Science.gov (United States)

    Panda, Sidhartha; Yegireddy, Narendra Kumar

    2015-09-01

    In this paper, a hybrid Improved Differential Evolution and Pattern Search (hIDEPS) approach is proposed for the design of a PI-Type Multi-Input Single Output (MISO) Static Synchronous Series Compensator (SSSC) based damping controller. The improvement in Differential Evolution (DE) algorithm is introduced by a simple but effective scheme of changing two of its most important control parameters i.e. step size and crossover probability with an objective of achieving improved performance. Pattern Search (PS) is subsequently employed to fine tune the best solution provided by modified DE algorithm. The superiority of a proposed hIDEPS technique over DE and improved DE has also been demonstrated. At the outset, this concept is applied to a SSSC connected in a Single Machine Infinite Bus (SMIB) power system and then extended to a multi-machine power system. To show the effectiveness and robustness of the proposed design approach, simulation results are presented and compared with DE and Particle Swarm Optimization (PSO) optimized Single Input Single Output (SISO) SSSC based damping controllers. It is observed that the proposed approach yield superior damping performance compared to some approaches available in the literature.

  5. Differential expression of genes identified from Poncirus trifoliata tissue inoculated with CTV through EST analysis and in silico hybridization

    Directory of Open Access Journals (Sweden)

    Mariângela Cristofani-Yaly

    2007-01-01

    Full Text Available Citrus is the most important fruit crop in Brazil and Citrus tristeza virus (CTV is considered one of the most important pathogens of citrus. Most citrus species and varieties are susceptible to CTV infection. However, Poncirus trifoliata, a close relative of citrus, is resistant to the virus. In order to better understand the responses of citrus plants to the infection of CTV, we constructed expressed sequence tag (EST libraries with tissues collected from Poncirus trifoliata plants, inoculated or not with Citrus tristeza virus at 90 days after inoculation, grafted on Rangpur lime rootstocks. We generated 17,867 sequence tags from Poncirus trifoliata inoculated (8,926 reads and not (8,941 reads with a severe CTV isolate. A total of 2,782 TCs (Tentative Consensi sequences were obtained using both cDNA libraries in a single clusterization procedure. By the in silico hybridization approach, 289 TCs were identified as differentially expressed in the two libraries. A total of 121 TCs were found to be overexpressed in plants infected with CTV and were grouped in 12 primary functional categories. The majority of them were associated with metabolism and defense response. Some others were related to lignin, ethylene biosynthesis and PR proteins. In general, the differentially expressed transcripts seem to be somehow involved in secondary plant response to CTV infection.

  6. An automatic differentiation-based gradient method for inversion of the shear wave equation in magnetic resonance elastography: specific application in fibrous soft tissues

    Science.gov (United States)

    Chatelin, Simon; Charpentier, Isabelle; Corbin, Nadège; Meylheuc, Laurence; Vappou, Jonathan

    2016-07-01

    Quantitative and accurate measurement of in vivo mechanical properties using dynamic elastography has been the scope of many research efforts over the past two decades. Most of the shear-wave-based inverse approaches for magnetic resonance elastography (MRE) make the assumption of isotropic viscoelasticity. In this paper, we propose a quantitative gradient method for inversion of the shear wave equation in anisotropic media derived from a full waveform description using analytical viscoelastic Green formalism and automatic differentiation. The abilities and performances of the proposed identification method are first evaluated on numerical phantoms calculated in a transversely isotropic medium, and subsequently on experimental MRE data measured on an isotropic hydrogel phantom, on an anisotropic cryogel phantom and on an ex vivo fibrous muscle. The experiments are carried out by coupling circular shear wave profiles generated by acoustic radiation force and MRE acquisition of the wave front. Shear modulus values obtained by our MRE method are compared to those obtained by rheometry in the isotropic hydrogel phantom, and are found to be in good agreement despite non-overlapping frequency ranges. Both the cryogel and the ex vivo muscle are found to be anisotropic. Stiffness values in the longitudinal direction are found to be 1.8 times and 1.9 times higher than those in the transverse direction for the cryogel and the muscle, respectively. The proposed method shows great perspectives and substantial benefits for the in vivo quantitative investigation of complex mechanical properties in fibrous soft tissues.

  7. An automatic differentiation-based gradient method for inversion of the shear wave equation in magnetic resonance elastography: specific application in fibrous soft tissues.

    Science.gov (United States)

    Chatelin, Simon; Charpentier, Isabelle; Corbin, Nadège; Meylheuc, Laurence; Vappou, Jonathan

    2016-07-01

    Quantitative and accurate measurement of in vivo mechanical properties using dynamic elastography has been the scope of many research efforts over the past two decades. Most of the shear-wave-based inverse approaches for magnetic resonance elastography (MRE) make the assumption of isotropic viscoelasticity. In this paper, we propose a quantitative gradient method for inversion of the shear wave equation in anisotropic media derived from a full waveform description using analytical viscoelastic Green formalism and automatic differentiation. The abilities and performances of the proposed identification method are first evaluated on numerical phantoms calculated in a transversely isotropic medium, and subsequently on experimental MRE data measured on an isotropic hydrogel phantom, on an anisotropic cryogel phantom and on an ex vivo fibrous muscle. The experiments are carried out by coupling circular shear wave profiles generated by acoustic radiation force and MRE acquisition of the wave front. Shear modulus values obtained by our MRE method are compared to those obtained by rheometry in the isotropic hydrogel phantom, and are found to be in good agreement despite non-overlapping frequency ranges. Both the cryogel and the ex vivo muscle are found to be anisotropic. Stiffness values in the longitudinal direction are found to be 1.8 times and 1.9 times higher than those in the transverse direction for the cryogel and the muscle, respectively. The proposed method shows great perspectives and substantial benefits for the in vivo quantitative investigation of complex mechanical properties in fibrous soft tissues.

  8. Suppression subtractive hybridization identified differentially expressed genes in lung adenocarcinoma: ERGIC3 as a novel lung cancer-related gene

    Directory of Open Access Journals (Sweden)

    Wu Mingsong

    2013-02-01

    Full Text Available Abstract Background To understand the carcinogenesis caused by accumulated genetic and epigenetic alterations and seek novel biomarkers for various cancers, studying differentially expressed genes between cancerous and normal tissues is crucial. In the study, two cDNA libraries of lung cancer were constructed and screened for identification of differentially expressed genes. Methods Two cDNA libraries of differentially expressed genes were constructed using lung adenocarcinoma tissue and adjacent nonmalignant lung tissue by suppression subtractive hybridization. The data of the cDNA libraries were then analyzed and compared using bioinformatics analysis. Levels of mRNA and protein were measured by quantitative real-time polymerase chain reaction (q-RT-PCR and western blot respectively, as well as expression and localization of proteins were determined by immunostaining. Gene functions were investigated using proliferation and migration assays after gene silencing and gene over-expression. Results Two libraries of differentially expressed genes were obtained. The forward-subtracted library (FSL and the reverse-subtracted library (RSL contained 177 and 59 genes, respectively. Bioinformatic analysis demonstrated that these genes were involved in a wide range of cellular functions. The vast majority of these genes were newly identified to be abnormally expressed in lung cancer. In the first stage of the screening for 16 genes, we compared lung cancer tissues with their adjacent non-malignant tissues at the mRNA level, and found six genes (ERGIC3, DDR1, HSP90B1, SDC1, RPSA, and LPCAT1 from the FSL were significantly up-regulated while two genes (GPX3 and TIMP3 from the RSL were significantly down-regulated (P  Conclusions The two libraries of differentially expressed genes may provide the basis for new insights or clues for finding novel lung cancer-related genes; several genes were newly found in lung cancer with ERGIC3 seeming a novel lung cancer

  9. Suppression subtractive hybridization reveals differential gene expression in sunflower grown in high P.

    Science.gov (United States)

    Padmanabhan, Priya; Sahi, Shivendra V

    2011-06-01

    Sunflower (Helianthus annuus L.) is a commercially important oilseed crop. Previous studies proved that this crop is a promising plant species for phytoextraction of excess soil phosphorus (P) because of its superior P accumulating characteristics. Suppression subtractive hybridization (SSH) strategy was employed to isolate and characterize genes that are induced in response to high P in this crop. SSH library was prepared using cDNA generated from plants treated with high P as the 'tester'. Based on the results of dot blot analysis, 360 positive cDNA clones were selected from the SSH library for sequencing. A total of 89 non-redundant expressed sequence tags (ESTs) were identified as high P-responsive genes and they were classified into 6 functional groups. Several genes involved in metabolism showed markedly preferential expression in the library. For further confirmation, thirteen of the representative ESTs were selected from all categories for RT-PCR analysis and the results showed up-regulation of these genes in response to high P-treatment. The gene expression data derived from this study suggested that several of the up-regulated genes identified under high P-treatment might be involved in P-accumulation and tolerance in this plant.

  10. Genotyping of the CCR5 chemokine receptor by isothermal NASBA amplification and differential probe hybridization.

    Science.gov (United States)

    Romano, J W; Tetali, S; Lee, E M; Shurtliff, R N; Wang, X P; Pahwa, S; Kaplan, M H; Ginocchio, C C

    1999-11-01

    The human CCR5 chemokine receptor functions as a coreceptor with CD4 for infection by macrophage-tropic isolates of human immunodeficiency virus type 1 (HIV-1). A mutated CCR5 allele which encodes a protein that does not function as a coreceptor for HIV-1 has been identified. Thus, expression of the wild-type and/or mutation allele is relevant to determining the infectability of patient peripheral blood mononuclear cells (PBMC) and affects disease progression in vivo. We developed a qualitative CCR5 genotyping assay using NASBA, an isothermal nucleic acid amplification technology. The method involves three enzymes and two oligonucleotides and targets the CCR5 mRNA, which is expressed in PBMC at a copy number higher than 2, the number of copies of DNA present encoding the gene. The single oligonucleotide set amplifies both alleles, and genotyping is achieved by separate hybridizations of wild-type- and mutation-specific probes directly to the single-stranded RNA amplification product. Assay sensitivity and specificity were demonstrated with RNAs produced in vitro from plasmid clones bearing the DNA encoding each allele. No detectable cross-reactivity between wild-type and mutation probes was found, and 50 copies of each allele were readily detectable. Analysis of patient samples found that 20% were heterozygous and 1% were homozygous for the CCR5 mutation. Thus, NASBA is a sensitive and specific means of rapidly determining CCR5 genotype and provides several technical advantages over alternative assay systems.

  11. Differentiation between spore-forming and asporogenic bacteria using a PCR and southern hybridization based method

    Energy Technology Data Exchange (ETDEWEB)

    Brill, J.A.; Wiegel, J. [Univ. of Georgia, Athens, GA (United States)

    1997-12-31

    A set of molecular probes was devised to develop a method for screening for the presence of sequences homologous to three representative genes exclusively involved in endosporulation. Based on known gene sequences, degenerate PCR primers were designed against spo0A and ssp. Experimental conditions were devised under which homologs of both genes were consistently detected in endospore-forming bacteria, but not in asporogenic bacteria. The PCR amplification products and dpaA/B from Bacillus subtilis were used as hybridization probes for Southern blots. Identical conditions were used with the genomic DNA from endospore-forming and asporogenic bacteria. We therefore concluded that the probes specifically detect the targeted sporulation genes and we obtained no indication that genes homologous to ssp, spo0A and dpaA/B are present in asporogenic bacteria. Thus, this assay can potentially be used to detect spore-forming bacteria in various kinds of samples and to distinguish between bacteria containing sporulation genes and those who do not regardless of whether sporulation is observed or not. 43 refs., 3 figs., 1 tab.

  12. A hybrid approach to protein differential expression in mass spectrometry-based proteomics

    KAUST Repository

    Wang, X.

    2012-04-19

    MOTIVATION: Quantitative mass spectrometry-based proteomics involves statistical inference on protein abundance, based on the intensities of each protein\\'s associated spectral peaks. However, typical MS-based proteomics datasets have substantial proportions of missing observations, due at least in part to censoring of low intensities. This complicates intensity-based differential expression analysis. RESULTS: We outline a statistical method for protein differential expression, based on a simple Binomial likelihood. By modeling peak intensities as binary, in terms of \\'presence/absence,\\' we enable the selection of proteins not typically amenable to quantitative analysis; e.g. \\'one-state\\' proteins that are present in one condition but absent in another. In addition, we present an analysis protocol that combines quantitative and presence/absence analysis of a given dataset in a principled way, resulting in a single list of selected proteins with a single-associated false discovery rate. AVAILABILITY: All R code available here: http://www.stat.tamu.edu/~adabney/share/xuan_code.zip.

  13. Hybrid modeling of the crosstalk between signaling and transcriptional networks using ordinary differential equations and multi-valued logic.

    Science.gov (United States)

    Khan, Faiz M; Schmitz, Ulf; Nikolov, Svetoslav; Engelmann, David; Pützer, Brigitte M; Wolkenhauer, Olaf; Vera, Julio

    2014-01-01

    A decade of successful results indicates that systems biology is the appropriate approach to investigate the regulation of complex biochemical networks involving transcriptional and post-transcriptional regulations. It becomes mandatory when dealing with highly interconnected biochemical networks, composed of hundreds of compounds, or when networks are enriched in non-linear motifs like feedback and feedforward loops. An emerging dilemma is to conciliate models of massive networks and the adequate description of non-linear dynamics in a suitable modeling framework. Boolean networks are an ideal representation of massive networks that are humble in terms of computational complexity and data demand. However, they are inappropriate when dealing with nested feedback/feedforward loops, structural motifs common in biochemical networks. On the other hand, models of ordinary differential equations (ODEs) cope well with these loops, but they require enormous amounts of quantitative data for a full characterization of the model. Here we propose hybrid models, composed of ODE and logical sub-modules, as a strategy to handle large scale, non-linear biochemical networks that include transcriptional and post-transcriptional regulations. We illustrate the construction of this kind of models using as example a regulatory network centered on E2F1, a transcription factor involved in cancer. The hybrid modeling approach proposed is a good compromise between quantitative/qualitative accuracy and scalability when considering large biochemical networks with a small highly interconnected core, and module of transcriptionally regulated genes that are not part of critical regulatory loops. This article is part of a Special Issue entitled: Computational Proteomics, Systems Biology & Clinical Implications. Guest Editor: Yudong Cai.

  14. Research on Hybrid-based Automatic Conversion Methodology of Text-to-Mark%基于混合策略的文图自动转换方法研究

    Institute of Scientific and Technical Information of China (English)

    范希辉; 李刚; 叶纯; 陈代梅

    2016-01-01

    针对文图自动转换问题,借鉴事件模型的思想,结合自然语言理解和本体技术,提出了基于混合策略的文图自动转换方法。通过构建领域本体等知识库,在其支持下对文书进行预处理,以及词法、语法、语义和语用分析,最终实现了文图的自动转换。为验证方法的可行性,设计并实现了文图自动转换原型系统,测试表明,能有效提高文图自动转换的效率和准确性,具有一定的参考价值。%To solve the automatic conversion problem of text-to-mark,draw on the idea of event model,combine natural language understanding and ontology technology,a method of text-to-mark automatic conversion based on hybrid strategy is proposed. By building knowledge base such as domain ontology,the instrument is preprocessed under its support,as well as lexical,syntactic,semantic and pragmatic analysis,and ultimately the automatic conversion of text-to-mark. To verify the feasibility of the method,a prototype system is designed and implemented ,tests show that can effectively improve the efficiency and accuracy of text-to-mark automatic conversion ,which has a certain reference value.

  15. Rapid differentiation of Francisella species and subspecies by fluorescent in situ hybridization targeting the 23S rRNA

    Directory of Open Access Journals (Sweden)

    Trebesius Karlheinz

    2010-03-01

    Full Text Available Abstract Background Francisella (F. tularensis is the causative agent of tularemia. Due to its low infectious dose, ease of dissemination and high case fatality rate, F. tularensis was the subject in diverse biological weapons programs and is among the top six agents with high potential if misused in bioterrorism. Microbiological diagnosis is cumbersome and time-consuming. Methods for the direct detection of the pathogen (immunofluorescence, PCR have been developed but are restricted to reference laboratories. Results The complete 23S rRNA genes of representative strains of F. philomiragia and all subspecies of F. tularensis were sequenced. Single nucleotide polymorphisms on species and subspecies level were confirmed by partial amplification and sequencing of 24 additional strains. Fluorescent In Situ Hybridization (FISH assays were established using species- and subspecies-specific probes. Different FISH protocols allowed the positive identification of all 4 F. philomiragia strains, and more than 40 F. tularensis strains tested. By combination of different probes, it was possible to differentiate the F. tularensis subspecies holarctica, tularensis, mediasiatica and novicida. No cross reactivity with strains of 71 clinically relevant bacterial species was observed. FISH was also successfully applied to detect different F. tularensis strains in infected cells or tissue samples. In blood culture systems spiked with F. tularensis, bacterial cells of different subspecies could be separated within single samples. Conclusion We could show that FISH targeting the 23S rRNA gene is a rapid and versatile method for the identification and differentiation of F. tularensis isolates from both laboratory cultures and clinical samples.

  16. Suppression subtraction hybridization (SSH) and macroarray techniques reveal differential gene expression profiles in brain of sea bream infected with nodavirus.

    Science.gov (United States)

    Dios, S; Poisa-Beiro, L; Figueras, A; Novoa, B

    2007-03-01

    Despite of the impact that viruses have on aquatic organisms, relatively little is known on how fish fight against these infections. In this work, the brain gene expression pattern of sea bream (Sparus aurata) in response to nodavirus infection was investigated. We used the suppression subtractive hybridization (SSH) method to generate a subtracted cDNA library enriched with gene transcripts differentially expressed after 1 day post-infection. Some of the ESTs from the infected tissues fell in gene categories related to stress and immune responses. For the reverse library (ESTs expressed in controls compared with infected tissues) the most abundant transcripts were of ribosomal and mitochondrial nature. Several ESTs potentially induced by virus exposure were selected for in vivo expression studies. We observed a clear difference in expression between infected and control samples for two candidate genes, ubiquitin conjugating enzyme 7 interacting protein, which seems to play an important role in apoptosis and the interferon induced protein with helicase C domain 1 (mda-5) that contributes to apoptosis and regulates the type I IFN production, a key molecule of the antiviral innate response in most organisms.

  17. Identification of genes differentially expressed by Metarhizium anisopliae growing on Locusta migratoria wings using suppression subtractive hybridization.

    Science.gov (United States)

    Zhang, Chuanbo; Xia, Yuxian; Li, Zhongyuan

    2011-05-01

    Insect-pathogenic fungi penetrate their hosts directly through the cuticle. To better understand this process, we identified genes that were up-regulated by Metarhizium anisopliae germinating and differentiating on Locusta migratoria wings using suppression subtractive hybridization (SSH). A total of 78 unique expressed sequence tags (ESTs) up-regulated more than twofold during fungal growth on locust wings were identified. Among these 78 ESTs, 30 (38.5%) shared significant similarity with NCBI annotated hypothetical proteins, 16 (20.5%) shared low similarity to known or predicted genes, might represent novel genes, and 32 (41.0%) shared significant similarity with known proteins that are involved in various cell and molecular processes such as cell metabolism, protein metabolism, stress response and defense, and cell structure and function. Semi-quantitative RT-PCR analysis of six randomly selected genes confirmed the SSH results, verifying the fidelity of the SSH data. The results of this study provide novel information on genes expressed during early stages of infection with M. anisopliae, and improve current understanding of fungal pathogenesis.

  18. A hybrid credibility-based fuzzy multiple objective optimisation to differential pricing and inventory policies with arbitrage consideration

    Science.gov (United States)

    Ghasemy Yaghin, R.; Fatemi Ghomi, S. M. T.; Torabi, S. A.

    2015-10-01

    In most markets, price differentiation mechanisms enable manufacturers to offer different prices for their products or services in different customer segments; however, the perfect price discrimination is usually impossible for manufacturers. The importance of accounting for uncertainty in such environments spurs an interest to develop appropriate decision-making tools to deal with uncertain and ill-defined parameters in joint pricing and lot-sizing problems. This paper proposes a hybrid bi-objective credibility-based fuzzy optimisation model including both quantitative and qualitative objectives to cope with these issues. Taking marketing and lot-sizing decisions into account simultaneously, the model aims to maximise the total profit of manufacturer and to improve service aspects of retailing simultaneously to set different prices with arbitrage consideration. After applying appropriate strategies to defuzzify the original model, the resulting non-linear multi-objective crisp model is then solved by a fuzzy goal programming method. An efficient stochastic search procedure using particle swarm optimisation is also proposed to solve the non-linear crisp model.

  19. Effects of pH and thermally sensitive hybrid gels on osteogenic differentiation of mesenchymal stem cells.

    Science.gov (United States)

    Dai, Zhuojun; Shu, Yinglan; Wan, Chao; Wu, Chi

    2015-04-01

    Osteoblastic differentiation of mesenchymal stem cells from bone marrow is an essential step for bone formation. The osteogenesis is normally induced by chemical mediators. Recent laboratory studies have revealed that mechanical properties of an extracellular matrix, typically hydrogels with different modules, also affect the fate of stem cells. The question is how to adjust their mechanical properties inside the body in biomedical applications. In this study, we designed/used a novel extracellular matrix, namely, a hybrid gel made of billions of injectable small thermally and pH-sensitive poly(N-isopropylacrylamide-co-acrylic acid) microgels whose swelling at the body pH and temperature physically jammed them and mesenchymal stem cells together, which enabled us to in situ apply an adjustable mechanical stress on those embedded stem cells. By treating the cell layer with the microgels, we found that an earlier incorporation of the microgels significantly increases the alkaline phosphatase activity, while a later addition of the microgels after the primary calcium deposition enhances the extracellular matrix mineralization in the mesenchymal stem cells cultures accompanied by up-regulation of osteogenic marker genes expression, presumably due to the calcium fixation by the carboxyl groups inside the microgels and the physical contact between the microgels and mesenchymal stem cells layers. These microgels provide an extracellular matrix microenvironment to affect the fate and biological behavior of mesenchymal stem cells, facilitating their potential applications in regenerative therapies.

  20. A new method of ionospheric-free hybrid differential positioning based on a double-antenna CAPS receiver

    Institute of Scientific and Technical Information of China (English)

    GUO JinYun; HAN YanBen; CHANG XiaoTao

    2009-01-01

    Chinese Area Positioning System (CAPS) is a transmitted satellite navigation system moved by the Chinese Academy of Sciences.Three basic modes of navigation and positioning with CAPS are given,and then a comparative analysis is made in this paper.In terms of the principle that the ionospheric delay is at an inverse ratio to the frequency square,a new ionospheric-free positioning method based on a double-antenna CAPS receiver is put forward.Then the hybrid differential observations and the solving equations and algorithms for one epoch and multi epochs are deduced according to the basic principle of the method.The method may remove the global errors in signal emission,propagation,transmission and receiving (e.g.,ionospheric delay,hardware delay,and clock error).So it is very convenient for the single-epoch solution and multi-epoch navigation and positioning,and may efficiently improve the precision of real time CAPS navigation.Furthermore,the method can be used not only for the geometric orbit determination of CAPS GEO and IGSO satellites and the navigation and positioning,but also for the estimation of the tropospheric zenith delay,which is useful for the study of water vapor changes in the atmosphere.Polynomials are used in this method to express the tropospheric zenith delay and CAPS satellite orbits within the limited time interval,which reduces the number of unknown parameters and thus speeds the computation.

  1. A new method of ionospheric-free hybrid differential positioning based on a double-antenna CAPS receiver

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    Chinese Area Positioning System (CAPS) is a transmitted satellite navigation system moved by the Chinese Academy of Sciences. Three basic modes of navigation and positioning with CAPS are given, and then a comparative analysis is made in this paper. In terms of the principle that the ionospheric delay is at an inverse ratio to the frequency square, a new ionospheric-free positioning method based on a double-antenna CAPS receiver is put forward. Then the hybrid differential observations and the solving equations and algorithms for one epoch and multi epochs are deduced according to the basic principle of the method. The method may remove the global errors in signal emission, propagation, transmission and receiving (e.g., ionospheric delay, hardware delay, and clock error). So it is very convenient for the single-epoch solution and multi-epoch navigation and positioning, and may efficiently improve the precision of real time CAPS navigation. Furthermore, the method can be used not only for the geometric orbit determination of CAPS GEO and IGSO satellites and the navigation and positioning, but also for the estimation of the tropospheric zenith delay, which is useful for the study of water vapor changes in the atmosphere. Polynomials are used in this method to express the tropospheric zenith delay and CAPS satellite orbits within the limited time interval, which reduces the num- ber of unknown parameters and thus speeds the computation.

  2. Design and characterization of hybrid peptide sol-gel materials for the solid state induction of neuronal differentiation

    Science.gov (United States)

    Jedlicka, Sabrina S.

    2007-12-01

    Cell-based therapeutics are a rapidly growing area of research, with considerable promise in the treatment of neurological diseases. One of the primary limitations to neuronal cell-based devices is the necessity to maintain cells in an immature or undifferentiated state in culture prior to transplantation. In many cases, the undifferentiated cell does not express the desired characteristics for implantation. Biologically functional nanomaterials provide the ability to manipulate the direct extracellular environment surrounding cells; influencing their fate and differentiation path. The ability to engineer the interface between the cells and culture materials provides a repeatable, stable means of directing cells down a specific growth path determined by endogenous signaling pathways. This materials approach to cellular engineering can limit the need for added exogenous growth factors, "feeder" layers, or animal sera, in addition to creating a homogenous cell population for transplantation. In this work, hybrid peptide ormosil materials were developed; designed to mimic the developing mammalian brain during corticogenesis. These materials have been developed to enhance the GABAergic phenotype of P19 embryonic carcinoma cells and immature immortalized neurons. The ability to develop a homogenous, directed cell population has implications in stem cell research, regenerative medicine, cell-based devices and biosensing technology.

  3. Multi-objective optimization of in-situ bioremediation of groundwater using a hybrid metaheuristic technique based on differential evolution, genetic algorithms and simulated annealing

    Directory of Open Access Journals (Sweden)

    Kumar Deepak

    2015-12-01

    Full Text Available Groundwater contamination due to leakage of gasoline is one of the several causes which affect the groundwater environment by polluting it. In the past few years, In-situ bioremediation has attracted researchers because of its ability to remediate the contaminant at its site with low cost of remediation. This paper proposed the use of a new hybrid algorithm to optimize a multi-objective function which includes the cost of remediation as the first objective and residual contaminant at the end of the remediation period as the second objective. The hybrid algorithm was formed by combining the methods of Differential Evolution, Genetic Algorithms and Simulated Annealing. Support Vector Machines (SVM was used as a virtual simulator for biodegradation of contaminants in the groundwater flow. The results obtained from the hybrid algorithm were compared with Differential Evolution (DE, Non Dominated Sorting Genetic Algorithm (NSGA II and Simulated Annealing (SA. It was found that the proposed hybrid algorithm was capable of providing the best solution. Fuzzy logic was used to find the best compromising solution and finally a pumping rate strategy for groundwater remediation was presented for the best compromising solution. The results show that the cost incurred for the best compromising solution is intermediate between the highest and lowest cost incurred for other non-dominated solutions.

  4. Gelatin-Derived Graphene-Silicate Hybrid Materials Are Biocompatible and Synergistically Promote BMP9-Induced Osteogenic Differentiation of Mesenchymal Stem Cells.

    Energy Technology Data Exchange (ETDEWEB)

    Zou, Yulong; Taheri Qazvini, Nader; Zane, Kylie; Sadati, Monirosadat; Wei, Qiang; Liao, Junyi; Fan, Jiaming; Song, Dongzhe; Liu, Jianxiang; Ma, Chao; Tirrell, Matthew; de Pablo, Juan J.

    2017-05-17

    Graphene-based materials are used in many fields but have found only limited applications in biomedicine, including bone tissue engineering. Here, we demonstrate that novel hybrid materials consisting of gelatin-derived graphene and silicate nanosheets of Laponite (GL) are biocompatible and promote osteogenic differentiation of mesenchymal stem cells (MSCs). Homogeneous cell attachment, long-term proliferation, and osteogenic differentiation of MSCs on a GL-scaffold were confirmed using optical microscopy and scanning electron microscopy. GL-powders made by pulverizing the GL-scaffold were shown to promote bone morphogenetic protein (BMP9)-induced osteogenic differentiation. GL-powders increased the alkaline phosphatase (ALP) activity in immortalized mouse embryonic fibroblasts but decreased the ALP activity in more-differentiated immortalized mouse adipose-derived cells. Note, however, that GL-powders promoted BMP9-induced calcium mineral deposits in both MSC lines, as assessed using qualitative and quantitative alizarin red assays. Furthermore, the expression of chondro-osteogenic regulator markers such as Runx2, Sox9, osteopontin, and osteocalcin was upregulated by the GL-powder, independent of BMP9 stimulation; although the powder synergistically upregulated the BMP9-induced Osterix expression, the adipogenic marker PPAR gamma was unaffected. Furthermore, in vivo stem cell implantation experiments demonstrated that GL-powder could significantly enhance the BMP9-induced ectopic bone formation from MSCs. Collectively, our results strongly suggest that the GL hybrid materials promote BMP9-induced osteogenic differentiation of MSCs and hold promise for the development of bone tissue engineering platforms.

  5. Polymerase chain reaction-hybridization method using urease gene sequences for high-throughput Ureaplasma urealyticum and Ureaplasma parvum detection and differentiation.

    Science.gov (United States)

    Xu, Chen; Zhang, Nan; Huo, Qianyu; Chen, Minghui; Wang, Rengfeng; Liu, Zhili; Li, Xue; Liu, Yunde; Bao, Huijing

    2016-04-15

    In this article, we discuss the polymerase chain reaction (PCR)-hybridization assay that we developed for high-throughput simultaneous detection and differentiation of Ureaplasma urealyticum and Ureaplasma parvum using one set of primers and two specific DNA probes based on urease gene nucleotide sequence differences. First, U. urealyticum and U. parvum DNA samples were specifically amplified using one set of biotin-labeled primers. Furthermore, amine-modified DNA probes, which can specifically react with U. urealyticum or U. parvum DNA, were covalently immobilized to a DNA-BIND plate surface. The plate was then incubated with the PCR products to facilitate sequence-specific DNA binding. Horseradish peroxidase-streptavidin conjugation and a colorimetric assay were used. Based on the results, the PCR-hybridization assay we developed can specifically differentiate U. urealyticum and U. parvum with high sensitivity (95%) compared with cultivation (72.5%). Hence, this study demonstrates a new method for high-throughput simultaneous differentiation and detection of U. urealyticum and U. parvum with high sensitivity. Based on these observations, the PCR-hybridization assay developed in this study is ideal for detecting and discriminating U. urealyticum and U. parvum in clinical applications.

  6. Habitat differentiation in a narrow hybrid zone between diploid and tetraploid Anthoxanthum alpinum

    OpenAIRE

    Felber-Girard, M.; Felber, François; Buttler, Alexandre

    2008-01-01

    Populations of diploid and autotetraploid Anthoxanthum alpinum A. & D. Löve formed a narrow hybrid zone in a study area in the Swiss Prealps. Detailed vegetation analyses were performed along transects in several contact zones between the two cytotypes. The vegetation differed according to the position in the hybrid zone. When considering the hybrid zone as a whole, and for one transect that was analysed in detail, there was strong evidence for habitat segregation between the cytotypes. Veget...

  7. Construction of a 3D rGO-collagen hybrid scaffold for enhancement of the neural differentiation of mesenchymal stem cells

    Science.gov (United States)

    Guo, Weibo; Wang, Shu; Yu, Xin; Qiu, Jichuan; Li, Jianhua; Tang, Wei; Li, Zhou; Mou, Xiaoning; Liu, Hong; Wang, Zhonglin

    2016-01-01

    The cell-material interface is one of the most important considerations in designing a high-performance tissue engineering scaffold because the surface of the scaffold can determine the fate of stem cells. A conductive surface is required for a scaffold to direct stem cells toward neural differentiation. However, most conductive polymers are toxic and not amenable to biological degradation, which restricts the design of neural tissue engineering scaffolds. In this study, we used a bioactive three-dimensional (3D) porcine acellular dermal matrix (PADM), which is mainly composed of type I collagen, as a basic material and successfully assembled a layer of reduced graphene oxide (rGO) nanosheets on the surface of the PADM channels to obtain a porous 3D, biodegradable, conductive and biocompatible PADM-rGO hybrid neural tissue engineering scaffold. Compared with the PADM scaffold, assembling the rGO into the scaffold did not induce a significant change in the microstructure but endowed the PADM-rGO hybrid scaffold with good conductivity. A comparison of the neural differentiation of rat bone-marrow-derived mesenchymal stem cells (MSCs) was performed by culturing the MSCs on PADM and PADM-rGO scaffolds in neuronal culture medium, followed by the determination of gene expression and immunofluorescence staining. The results of both the gene expression and protein level assessments suggest that the rGO-assembled PADM scaffold may promote the differentiation of MSCs into neuronal cells with higher protein and gene expression levels after 7 days under neural differentiation conditions. This study demonstrated that the PADM-rGO hybrid scaffold is a promising scaffold for neural tissue engineering; this scaffold can not only support the growth of MSCs at a high proliferation rate but also enhance the differentiation of MSCs into neural cells.The cell-material interface is one of the most important considerations in designing a high-performance tissue engineering scaffold

  8. Identification of Differentially Expressed Genes in Metastatic and Non-Metastatic Nasopharyngeal Carcinoma Cells by Suppression Subtractive Hybridization

    Directory of Open Access Journals (Sweden)

    Xu-Yu Yang

    2005-01-01

    Full Text Available Background & Objective: Nasopharyngeal carcinoma (NPC is an epithelial neoplasm with high occurrence rates in southern China. The disease often metastasizes to regional lymphnodes at a very early stage. Local recurrences and metastasis occur frequently in patients with NPC and are a leading cause of death, despite improvements on treatment modalities. The molecular mechanism underlying the metastasis of nasopharyngeal carcinoma remains poorly understood, however, and requires additional elucidation. The aim of this study was to explore possible NPC gene candidates that may play key roles in NPC metastasis. Methods: Subtractive suppression hybridization (SSH was performed to isolate differentially expressed clones between the metastatic 5-8F and non-metastatic 6-10B nasopharyngeal carcinoma cell lines. Differentially expressed clones were screened and confirmed by reverse Northern blotting. The sequences of cDNA fragments were subsequently analyzed and compared to known sequences in Genbank. Results & Discussion: The SSH library contained thousands of positive clones. Random analysis of 300 clones by PCR demonstrated that 269 clones contained inserted fragments. Reverse Northern blot confirmed that 20 out of 192 clones examined were significantly up-regulated in the 5-8F cell line. Among these 20 clones, 16 were previously identified genes (flotilin-2, ezrin, pim-3, fli-1, mel, neugrin, znf216, ASB1, raly, UBE2A, keratin6A, TMED7, EIF3S9, FTL, two ribosomal proteins RPL21 and RPL16, two were predicted genes (c9orf74 and MDS006, and two sequences shared no homology with known genes listed in GenBank and may represent novel genes. The proposed functions of the genes identified in this study include cell signal transduction, cell survival, transcription regulation, cell mobility, protein synthesis, and DNA damage repair. Flotillin-2, fli-1, pim-3 and ezrin have previously been reported to be associated with tumor metastasis and progression. The

  9. Screening and identification of differentially expressed transcripts in circulating cells of prostate cancer patients using suppression subtractive hybridization

    Directory of Open Access Journals (Sweden)

    Manatt C Scott

    2005-08-01

    Full Text Available Abstract Background Tumor metastasis and changes in host immunosurveillance are important components in cancer development. Tumor cell invasion into the bloodstream is an essential step for systemic metastasis. Currently, the detection of tumor cells in the circulation is mainly dependent upon the utilization of known epithelial cell markers. However, expression of these molecules is not limited to cancer patients; healthy people also have a small number of epithelial cells in their circulation. Utilizing these markers to detect circulating tumor cells (CTCs cannot adequately explain the mechanisms of tumor cell survival or their development of metastatic potential in peripheral blood. The immune system can also evolve along with the cancer, actually promoting or selecting the outgrowth of tumor variants. Unfortunately, both metastasis and immunosurveillance remain mysterious and are debatable because we have yet to define the molecules that participate in these processes. We are interested in identifying the existence of expressed genes, or mRNA species, that are specifically associated with circulating cells of cancer-bearing patients using prostate cancer (PCa as a model. Results We established two comprehensive subtracted cDNA libraries using a molecular technique called suppression subtractive hybridization. This technique selectively amplifies transcripts that are specifically expressed in circulating cells of either PCa patients or healthy men. Following sequencing reaction, we showed that 17 out of 23 (73.9% sequenced clones did not match any mRNAs in the GenBank database. This result suggests that genes associated with alterations in circulating cells of cancer-bearing patients are largely unknown. Semi-quantitative RT-PCR confirmed that two genes are up-regulated in circulating cells of PCa patients, whereas another two genes are down-regulated in the same patients. Conclusion The comprehensive gene expression analysis is capable of

  10. Identification of differentially expressed genes in SHSY5Y cells exposed to okadaic acid by suppression subtractive hybridization

    Directory of Open Access Journals (Sweden)

    Valdiglesias Vanessa

    2012-01-01

    Full Text Available Abstract Background Okadaic acid (OA, a toxin produced by several dinoflagellate species is responsible for frequent food poisonings associated to shellfish consumption. Although several studies have documented the OA effects on different processes such as cell transformation, apoptosis, DNA repair or embryogenesis, the molecular mechanistic basis for these and other effects is not completely understood and the number of controversial data on OA is increasing in the literature. Results In this study, we used suppression subtractive hybridization in SHSY5Y cells to identify genes that are differentially expressed after OA exposure for different times (3, 24 and 48 h. A total of 247 subtracted clones which shared high homology with known genes were isolated. Among these, 5 specific genes associated with cytoskeleton and neurotransmission processes (NEFM, TUBB, SEPT7, SYT4 and NPY were selected to confirm their expression levels by real-time PCR. Significant down-regulation of these genes was obtained at the short term (3 and 24 h OA exposure, excepting for NEFM, but their expression was similar to the controls at 48 h. Conclusions From all the obtained genes, 114 genes were up-regulated and 133 were down-regulated. Based on the NCBI GenBank and Gene Ontology databases, most of these genes are involved in relevant cell functions such as metabolism, transport, translation, signal transduction and cell cycle. After quantitative PCR analysis, the observed underexpression of the selected genes could underlie the previously reported OA-induced cytoskeleton disruption, neurotransmission alterations and in vivo neurotoxic effects. The basal expression levels obtained at 48 h suggested that surviving cells were able to recover from OA-caused gene expression alterations.

  11. Nucleotide divergence vs. gene expression differentiation: comparative transcriptome sequencing in natural isolates from the carrion crow and its hybrid zone with the hooded crow.

    Science.gov (United States)

    Wolf, Jochen B W; Bayer, Till; Haubold, Bernhard; Schilhabel, Markus; Rosenstiel, Philip; Tautz, Diethard

    2010-03-01

    Recent advances in sequencing technology promise to provide new strategies for studying population differentiation and speciation phenomena in their earliest phases. We focus here on the black carrion crow (Corvus [corone] corone), which forms a zone of hybridization and overlap with the grey coated hooded crow (Corvus [corone] cornix). However, although these semispecies are taxonomically distinct, previous analyses based on several types of genetic markers did not reveal significant molecular differentiation between them. We here corroborate this result with sequence data obtained from a set of 25 nuclear intronic loci. Thus, the system represents a case of a very early phase of species divergence that requires new molecular approaches for its description. We have therefore generated RNAseq expression profiles using barcoded massively parallel pyrosequencing of brain mRNA from six individuals of the carrion crow and five individuals from a hybrid zone with the hooded crow. We obtained 856 675 reads from two runs, with average read length of 270 nt and coverage of 8.44. Reads were assembled de novo into 19 552 contigs, 70% of which could be assigned to annotated genes in chicken and zebra finch. This resulted in a total of 7637 orthologous genes and a core set of 1301 genes that could be compared across all individuals. We find a clear clustering of expression profiles for the pure carrion crow animals and disperse profiles for the animals from the hybrid zone. These results suggest that gene expression differences may indeed be a sensitive indicator of initial species divergence.

  12. A Hybrid One-Way ANOVA Approach for the Robust and Efficient Estimation of Differential Gene Expression with Multiple Patterns.

    Directory of Open Access Journals (Sweden)

    Mohammad Manir Hossain Mollah

    Full Text Available Identifying genes that are differentially expressed (DE between two or more conditions with multiple patterns of expression is one of the primary objectives of gene expression data analysis. Several statistical approaches, including one-way analysis of variance (ANOVA, are used to identify DE genes. However, most of these methods provide misleading results for two or more conditions with multiple patterns of expression in the presence of outlying genes. In this paper, an attempt is made to develop a hybrid one-way ANOVA approach that unifies the robustness and efficiency of estimation using the minimum β-divergence method to overcome some problems that arise in the existing robust methods for both small- and large-sample cases with multiple patterns of expression.The proposed method relies on a β-weight function, which produces values between 0 and 1. The β-weight function with β = 0.2 is used as a measure of outlier detection. It assigns smaller weights (≥ 0 to outlying expressions and larger weights (≤ 1 to typical expressions. The distribution of the β-weights is used to calculate the cut-off point, which is compared to the observed β-weight of an expression to determine whether that gene expression is an outlier. This weight function plays a key role in unifying the robustness and efficiency of estimation in one-way ANOVA.Analyses of simulated gene expression profiles revealed that all eight methods (ANOVA, SAM, LIMMA, EBarrays, eLNN, KW, robust BetaEB and proposed perform almost identically for m = 2 conditions in the absence of outliers. However, the robust BetaEB method and the proposed method exhibited considerably better performance than the other six methods in the presence of outliers. In this case, the BetaEB method exhibited slightly better performance than the proposed method for the small-sample cases, but the the proposed method exhibited much better performance than the BetaEB method for both the small- and large

  13. Distinguishing contemporary hybridization from past introgression with postgenomic ancestry-informative SNPs in strongly differentiated Ciona species.

    Science.gov (United States)

    Bouchemousse, Sarah; Liautard-Haag, Cathy; Bierne, Nicolas; Viard, Frédérique

    2016-11-01

    Biological introductions bring into contact species that can still hybridize. The evolutionary outcomes of such secondary contacts may be diverse (e.g. adaptive introgression from or into the introduced species) but are not yet well examined in the wild. The recent secondary contact between the non-native sea squirt Ciona robusta (formerly known as C. intestinalis type A) and its native congener C. intestinalis (formerly known as C. intestinalis type B), in the Western English Channel, provides an excellent case study to examine. To examine contemporary hybridization between the two species, we developed a panel of 310 ancestry-informative SNPs from a population transcriptomic study. Hybridization rates were examined on 449 individuals sampled in eight sites from the sympatric range and five sites from allopatric ranges. The results clearly showed an almost complete absence of contemporary hybridization between the two species in syntopic localities, with only one-first-generation hybrid and no other genotype compatible with recent backcrosses. Despite the almost lack of contemporary hybridization, shared polymorphisms were observed in sympatric and allopatric populations of both species. Furthermore, one allopatric population from SE Pacific exhibited a higher rate of shared polymorphisms compared to all other C. robusta populations. Altogether, these results indicate that the observed level of shared polymorphism is more probably the outcome of ancient gene flow spread afterwards at a worldwide scale. They also emphasize efficient reproductive barriers preventing hybridization between introduced and native species, which suggests hybridization should not impede too much the expansion and the establishment of the non-native species in its introduction range.

  14. Hybrid flow analyzer for automatic hollow-fiber-assisted ionic liquid-based liquid-phase microextraction with in-line membrane regeneration.

    Science.gov (United States)

    Nitiyanontakit, Sira; Varanusupakul, Pakorn; Miró, Manuel

    2013-04-01

    The proof-of-concept of a new methodology for in-line hollow-fiber (HF)-assisted three-phase liquid-phase microextraction (LPME) allowing for handling of the feed and acceptor aqueous solutions and of minute volumes of the organic extracting phase in a programmable flow mode is reported in this paper. The flow analyzer fosters in-line anchoring of ionic-liquid-laden extracting solution (10 % (v/v) methyltrioctyl ammonium chloride in kerosene) in the pores of a single-strand microporous polypropylene HF, and regeneration of the liquid-phase membrane itself for each individual analysis cycle in a fully automated mode. Using hexavalent chromium as a model analyte and 1,5-diphenylcarbazide as a chromogenic probe in the acceptor solution, the flow-based HF-LPME hyphenated system was harnessed to the clean-up of troublesome samples (viz., domestic wastewater and soil leachates) with concomitant enrichment of target species. Distinct extraction modes and chemistries were assessed for enhanced Cr(VI) permeability. A single sample plug was subjected to a twofold backward-forward flow extraction so as to decrease the thickness of the boundary layer at the HF shell side for improved extraction efficiency. Under the optimized physicochemical variables, a limit of detection of 4.6 μg L(-1) Cr(VI), a dynamic linear range of up to 500 μg L(-1) and intermediate precision better than 10 % were obtained for a sample volume of 2.8 mL buffered at pH 4 and a volume of organic extractant of 120 μL, with an enrichment factor of ca. 11 for a sample residence time in the donor compartment of merely 4.5 min. Analyte recoveries in domestic wastewaters were ≥83 % using external calibration with relative standard deviations better than 14 %, thereby demonstrating the expedient clean-up of samples with elevated content of dissolved organic carbon. The automatic HF-LPME method was validated in terms of bias against the SRM 2701 (NIST soil) preceded by the EPA alkaline digestion method 3060A

  15. Identification and characterization of genes differentially expressed in X and Y sperm using suppression subtractive hybridization and cDNA microarray.

    Science.gov (United States)

    Chen, Xiaoli; Yue, Yang; He, Yanan; Zhu, Huabin; Hao, Haisheng; Zhao, Xueming; Qin, Tong; Wang, Dong

    2014-10-01

    Differential expression of genes leads to variations in the phenotypes of X and Y sperm, although some differentially expressed gene products are shared through intercellular bridges. Genes differentially expressed in bovine X and Y sperm were identified by a combination of suppression subtractive hybridization (SSH), cDNA microarray, and sequence-homology analysis. Microarray data and Significance Analysis of Microarrays software were used to identify 31 differentially expressed genes, only four of which were previously identified. These genes are involved in fundamental life processes of mature sperm, and may be associated with the differences between X and Y sperm since 27 versus 4 were upregulated in X versus Y sperm, respectively. The levels of expression of seven genes-including the known genes UTY, DPH3, CYTB, and ISCU, and the unknown genes X + Y contig 41, X + Y contig 18, and Y + X contig 16-were validated by quantitative real-time PCR, and some genes were clearly differentially expressed by X and Y sperm, despite the presence of intercellular bridges among spermatids. These results provide a theoretical basis for research on gene expression during sperm development, as well as on sex control at the level of sperm.

  16. Automatic Reading

    Institute of Scientific and Technical Information of China (English)

    胡迪

    2007-01-01

    <正>Reading is the key to school success and,like any skill,it takes practice.A child learns to walk by practising until he no longer has to think about how to put one foot in front of the other.The great athlete practises until he can play quickly,accurately and without thinking.Ed- ucators call it automaticity.

  17. Advanced Hybrid Computer Systems. Software Technology.

    Science.gov (United States)

    This software technology final report evaluates advances made in Advanced Hybrid Computer System software technology . The report describes what...automatic patching software is available as well as which analog/hybrid programming languages would be most feasible for the Advanced Hybrid Computer...compiler software . The problem of how software would interface with the hybrid system is also presented.

  18. Symmetrical Key Automatic Changing Cryptography Based on Simple Hybrid Selection Coding%基于简易混合选择编码的对称密钥自变动加密

    Institute of Scientific and Technical Information of China (English)

    罗俊; 张国平

    2012-01-01

    Aiming at the encryption system with lower security requirements, this paper puts forward a symmetrical key automatic changing cryptography scheme based on simple hybrid selection coding, with the combination of unilateral canonical Huffman coding and fixed-length coding. The statistical results of plaintext are used as their own encrypted key and coding basis, which makes the scheme to be easy to implement and calculate and of cost low. It is proved that when the keys are completely unknown, the cracking of the encryption system has great difficulty.%针对安全性要求不太高的加密系统,将单边范式Huffman编码与等长编码相结合,提出一种基于混合选择编码的对称密钥自变动加密方案.通过将明文的统计结果作为自身加密的密钥和编码依据,使方案易于实现,且计算存储成本低.理论分析结果证明,在密钥完全未知的情况下破解该加密体制难度较大.

  19. Analysis of Differential Gene Expression Pattern in Brassica napus Hybrid Huayouza 6 and Its Parents Using Arabidopsis cDNA Microarray

    Institute of Scientific and Technical Information of China (English)

    SHEN Jun-ru; WU Jian-yong; ZHANG Jian; LIU Ping-wu; YANG Guang-sheng

    2006-01-01

    Huayouza 6, a new semi-winter Brassica napus variety with high-yield, good quality, prematurity and extensive adaptability, was derived from the cross between the female parent 8086A and male parent 7-5. Two cDNA-based Arabidopisis microarray were used to analyze gene differential expression in bud of an elite B. napus hybrid Huayouza6 and its parents,in which there were 83 over-expression transcripts and 331 under-expression transcripts between Huayouza 6 and its female parent 8086A and 94 over-expression transcripts, and 423 under-expression transcripts were demonstrated betweenHuayouza 6 and its male parent 7-5. Further analysis showed that there were significant number of genes responsible for photosynthesis, and its implication for heterosis was discussed. Northern analysis of phosphoribulokinase coincided with its expression pattern derived from hybridization of Arabidopsis cDNA microarray and B. napus mRNA, this system of heterologous hybridization analysis should be applicable to other close relatives of Arabidopsis thaliana.

  20. Effect of micro-nano-hybrid structured hydroxyapatite bioceramics on osteogenic and cementogenic differentiation of human periodontal ligament stem cell via Wnt signaling pathway.

    Science.gov (United States)

    Mao, Lixia; Liu, Jiaqiang; Zhao, Jinglei; Chang, Jiang; Xia, Lunguo; Jiang, Lingyong; Wang, Xiuhui; Lin, Kaili; Fang, Bing

    2015-01-01

    The surface structure of bioceramic scaffolds is crucial for its bioactivity and osteoinductive ability, and in recent years, human periodontal ligament stem cells have been certified to possess high osteogenic and cementogenic differential ability. In the present study, hydroxyapatite (HA) bioceramics with micro-nano-hybrid surface (mnHA [the hybrid of nanorods and microrods]) were fabricated via hydrothermal reaction of the α-tricalcium phosphate granules as precursors in aqueous solution, and the effects of mnHA on the attachment, proliferation, osteogenic and cementogenic differentiations of human periodontal ligament stem cells as well as the related mechanisms were systematically investigated. The results showed that mnHA bioceramics could promote cell adhesion, proliferation, alkaline phosphatase (ALP) activity, and expression of osteogenic/cementogenic-related markers including runt-related transcription factor 2 (Runx2), ALP, osteocalcin (OCN), cementum attachment protein (CAP), and cementum protein (CEMP) as compared to the HA bioceramics with flat and dense surface. Moreover, mnHA bioceramics stimulated gene expression of low-density lipoprotein receptor-related protein 5 (LRP5) and β-catenin, which are the key genes of canonical Wnt signaling. Moreover, the stimulatory effect on ALP activity and osteogenic and cementogenic gene expression, including that of ALP, OCN, CAP, CEMP, and Runx2 of mnHA bioceramics could be repressed by canonical Wnt signaling inhibitor dickkopf1 (Dkk1). The results suggested that the HA bioceramics with mnHA could act as promising grafts for periodontal tissue regeneration.

  1. A Hybrid Algorithm of Automatic Domain Concept Taxonomy Construction%一种混合的领域概念分类体系自动构建算法

    Institute of Scientific and Technical Information of China (English)

    罗年洁; 吕钊

    2014-01-01

    领域概念分类体系自动构建在人工智能、自然语言处理和信息检索等领域具有重要作用,但现有研究较多关注通用知识,面向特定领域的研究较少,且存在领域概念间关系抽取准确率以及自动构建算法效率较低等问题。为此,提出一种混合的领域概念分类体系自动构建算法,该算法主要包括领域概念间关系抽取模块和分类体系构建模块。领域概念间关系抽取模块设计考虑中文自身的特点,采取句法树和基于规则相结合的方法,以提高抽取领域概念间关系的查准率和查全率;分类体系构建模块设计采取改进的BRT算法,从而在降低算法复杂度的同时,提高领域分类体系构建的查准率。在通信、金融和计算机领域的实验结果均表明,与BRT算法相比,该算法的构建效果较好,查准率最高可达到89.3%。%Domain concept taxonomy automatic construction plays an important role in artificial intelligence,natural language processing and information retrieval. Existing approaches pay more attention on common knowledge, while there are fewer reports about domain concepts. Two main challenges of domain concept taxonomy automatic construction are identifying relationships between concepts and less efficiency of current algorithms. In this paper,a Hybrid algorithm of Automatic Domain concept Taxonomy construction(HADT) is proposed,which has two main modules:extracting relationships between domain concepts and automatic taxonomy construction. Considering Chinese characteristics,the first module uses syntax tree method and rule-based method together,to get the aim of higher precision and higher recall. The second module uses an improved BRT algorithm to reduce time complexity and to improve taxonomy construction precision. The experiments conducted on three datasets of mobile,financial and computer show the HADT algorithm is effectiveness compared with the BRT algorithm

  2. Hybrid Action Systems

    DEFF Research Database (Denmark)

    Ronkko, Mauno; Ravn, Anders P.

    1997-01-01

    a differential action, which allows differential equations as primitive actions. The extension allows us to model hybrid systems with both continuous and discrete behaviour. The main result of this paper is an extension of such a hybrid action system with parallel composition. The extension does not change...... the original meaning of the parallel composition, and therefore also the ordinary action systems can be composed in parallel with the hybrid action systems....

  3. Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries.

    OpenAIRE

    1996-01-01

    A new and highly effective method, termed suppression subtractive hybridization (SSH), has been developed for the generation of subtracted cDNA libraries. It is based primarily on a recently described technique called suppression PCR and combines normalization and subtraction in a single procedure. The normalization step equalizes the abundance of cDNAs within the target population and the subtraction step excludes the common sequences between the target and driver populations. In a model sys...

  4. Biosynthesis-Based Quantitative Analysis of 151 Secondary Metabolites of Licorice To Differentiate Medicinal Glycyrrhiza Species and Their Hybrids.

    Science.gov (United States)

    Song, Wei; Qiao, Xue; Chen, Kuan; Wang, Ying; Ji, Shuai; Feng, Jin; Li, Kai; Lin, Yan; Ye, Min

    2017-03-07

    Secondary metabolites are usually the bioactive components of medicinal plants. The difference in the secondary metabolisms of closely related plant species and their hybrids has rarely been addressed. In this study, we conducted a holistic secondary metabolomics analysis of three medicinal Glycyrrhiza species (G. uralensis, G. glabra, and G. inflata), which are used as the popular herbal medicine licorice. The Glycyrrhiza species (genotype) for 95 batches of samples were identified by DNA barcodes of the internal transcribed spacer and trnV-ndhC regions, and the chemotypes were revealed by LC/UV- or LC/MS/MS-based quantitative analysis of 151 bioactive secondary metabolites, including 17 flavonoid glycosides, 24 saponins, and 110 free phenolic compounds. These compounds represented key products in the biosynthetic pathways of licorice. For the 76 homozygous samples, the three Glycyrrhiza species showed significant biosynthetic preferences, especially in coumarins, chalcones, isoflavanes, and flavonols. In total, 27 species-specific chemical markers were discovered. The 19 hybrid samples indicated that hybridization could remarkably alter the chemical composition and that the male parent contributed more to the offspring than the female parent did. This is hitherto the largest-scale targeted secondary metabolomics study of medicinal plants and the first report on uniparental inheritance in plant secondary metabolism. The results are valuable for biosynthesis, inheritance, and quality control studies of licorice and other medicinal plants.

  5. [Differentially expressed genes identified in the main olfactory epithelium of mice with deficiency of adenylate cyclase 3 by using suppression subtractive hybridization approach].

    Science.gov (United States)

    Zhenlong, Cao; Jiangye, Hao; Yanfen, Zhou; Zhe, Zhang; Zhihua, Ni; Yuanxiang, Hu; Weili, Liu; Yongchao, Li; Daniel, R Storm; Runlin, Z Ma; Zhenshan, Wang

    2014-06-01

    Adenylate cyclase 3 (AC3) is one of the major players in the olfactory signaling within the main olfactory epithelium (MOE) of mice. However, we are not ascertained whether deficiency of AC3 will lead to the differential expression of related genes in the MOE. Forward and reverse subtractive libraries were constructed by suppression subtractive hybridization (SSH) approach, with MOEs from AC3(-/-) and AC3(+/+) mice. These two libraries were primarily screened by Dot blot, differential expressed clones were sequenced and analyzed by bioinformatics, and differential expressed genes were verified by qRT-PCR. A total of 386 differentially expressed clones were picked out after Dot blot. The DNA sequences of 80 clones randomly selected were determined, and 62 clones were identified by blasting in GenBank. We found that 24 up-regulated clones were corresponded to genes of kcnk3, mapk7, megf11, and 38 down-regulated clones were corresponded to tmem88b, c-mip, skp1a, mlycd, etc. Their functions were annotated with Gene Ontology (GO) and found to be mainly focused on molecular binding, cell cycle, processes of biology and cells. Five genes (kcnk3, c-mip, mlycd, tmem88b and trappc5) were verified by qRT-PCR with individuals of AC3(+/+) and AC3(-/-) mice. The data indicate that kcnk3 gene is up-regulated significantly, increasing 1.27 folds compared to control mice, whereas c-mip, mlycd, tmem88b and trappc5 are down-regulated significantly, decreasing 20%, 7%, 32% and 29% compared to the AC3(+/+)mice. The functions of these genes are closely related with K(+) channels, cell differentiation, metabolism of fats, membrane transportation, and so on. It is tempting to speculate that these genes might work together with AC3 to orchestrate the olfactory transduction signaling in the MOE.

  6. Differentially expressed genes of human microvascular endothelial cells in response to anti-dengue virus NS1 antibodies by suppression subtractive hybridization.

    Science.gov (United States)

    Yin, Yue; Jiang, Lan; Fang, Danyun; Jiang, Lifang; Zhou, Junmei

    2013-06-01

    It has been previously shown that anti-dengue virus (DENV) nonstructural protein NS1 antibodies could act as autoantibodies that direct against one or more of the host's own proteins, which has potential implications for dengue hemorrhagic fever pathogenesis. In the present study, we have employed suppression subtractive hybridization (SSH) to identify the differentially expressed genes from human microvascular endothelial cells (HMEC-1) in response to anti-dengue virus type 2 NS1 antibodies (anti-DENV2 NS1 Abs). A total of 35 clones from the SSH cDNA library were randomly selected for further analysis using bioinformatics tools after vector screening. After searching for sequence homology in NCBI GenBank database with BLASTN and BLASTX programs, 23 obtained sequences with significant matches (E-values <1×10(-4)) in the SSH library. The predicted genes in the subtracted library include immune response molecules (CD59 antigen preproprotein preproprotein, MURR1), signal transduction molecules (Nuclear casein kinase and cyclin-dependent kinase substrate 1), calcium-binding proteins (S100A6, Annexin A2 isoform 1/2), and cell-membrane component (Yip1 domain family). From these clones, 5 upregulated genes were selected for differential expression profiling by real-time RT-PCR to confirm their upregulated status. The results confirmed their differential upregulation, and thus verified the success of SSHs and the likely involvement of these genes in dengue pathogenesis.

  7. Succinyl and acetyl starch derivatives of a hybrid maize: physicochemical characteristics and retrogradation properties monitored by differential scanning calorimetry.

    Science.gov (United States)

    Lawal, Olayide S

    2004-11-15

    Starch isolated from a hybrid maize (8535-23) was chemically modified by succinylation and acetylation. No pronounced difference was observed between the X-ray pattern of native starch and modified starch samples, and the samples gave the characteristic A pattern of cereal starches. Onset temperature (T(o)), peak temperature (T(p)), concluding temperature (T(c)) and enthalpy of gelatinisation (DeltaH), reduced after succinylation and acetylation, but gelatinisation temperature range increased following starch modifications. Modifications reduced starch retrogradation.

  8. An effective hybrid self-adapting differential evolution algorithm for the joint replenishment and location-inventory problem in a three-level supply chain.

    Science.gov (United States)

    Wang, Lin; Qu, Hui; Chen, Tao; Yan, Fang-Ping

    2013-01-01

    The integration with different decisions in the supply chain is a trend, since it can avoid the suboptimal decisions. In this paper, we provide an effective intelligent algorithm for a modified joint replenishment and location-inventory problem (JR-LIP). The problem of the JR-LIP is to determine the reasonable number and location of distribution centers (DCs), the assignment policy of customers, and the replenishment policy of DCs such that the overall cost is minimized. However, due to the JR-LIP's difficult mathematical properties, simple and effective solutions for this NP-hard problem have eluded researchers. To find an effective approach for the JR-LIP, a hybrid self-adapting differential evolution algorithm (HSDE) is designed. To verify the effectiveness of the HSDE, two intelligent algorithms that have been proven to be effective algorithms for the similar problems named genetic algorithm (GA) and hybrid DE (HDE) are chosen to compare with it. Comparative results of benchmark functions and randomly generated JR-LIPs show that HSDE outperforms GA and HDE. Moreover, a sensitive analysis of cost parameters reveals the useful managerial insight. All comparative results show that HSDE is more stable and robust in handling this complex problem especially for the large-scale problem.

  9. An Effective Hybrid Self-Adapting Differential Evolution Algorithm for the Joint Replenishment and Location-Inventory Problem in a Three-Level Supply Chain

    Directory of Open Access Journals (Sweden)

    Lin Wang

    2013-01-01

    Full Text Available The integration with different decisions in the supply chain is a trend, since it can avoid the suboptimal decisions. In this paper, we provide an effective intelligent algorithm for a modified joint replenishment and location-inventory problem (JR-LIP. The problem of the JR-LIP is to determine the reasonable number and location of distribution centers (DCs, the assignment policy of customers, and the replenishment policy of DCs such that the overall cost is minimized. However, due to the JR-LIP’s difficult mathematical properties, simple and effective solutions for this NP-hard problem have eluded researchers. To find an effective approach for the JR-LIP, a hybrid self-adapting differential evolution algorithm (HSDE is designed. To verify the effectiveness of the HSDE, two intelligent algorithms that have been proven to be effective algorithms for the similar problems named genetic algorithm (GA and hybrid DE (HDE are chosen to compare with it. Comparative results of benchmark functions and randomly generated JR-LIPs show that HSDE outperforms GA and HDE. Moreover, a sensitive analysis of cost parameters reveals the useful managerial insight. All comparative results show that HSDE is more stable and robust in handling this complex problem especially for the large-scale problem.

  10. Identification of differentially expressed genes in American cockroach ovaries and testes by suppression subtractive hybridization and the prediction of its miRNAs.

    Science.gov (United States)

    Chen, Wan; Jiang, Guo-Fang; Sun, Shu-Hong; Lu, Yong; Ma, Fei; Li, Bin

    2013-11-01

    Studies on the cockroach have contributed to our understanding of several important developmental processes, especially those that can be easily studied in the embryo. However, our knowledge on late events such as gonad differentiation in the cockroach is still limited. The major aim of the present study was to identify sex-specific genes between adult female and male Periplaneta americana. Two cDNA libraries were constructed using the suppression subtractive hybridization method; a total of 433 and 599 unique sequences were obtained from the forward library and the reverse library, respectively, by cluster assembly, and sequence alignment of 1,032 expressed sequence tags. The analysis of the differentially expressed gene functions allowed these genes to be categorized into three groups: biological process, molecular function, and cellular component. The differentially expressed genes were suggested to be related to the development of the gonads of P. americana. Twelve differentially expressed genes were randomly selected and verified using relative quantitative real-time polymerase chain reaction (qRT-PCR). Meanwhile, by adopting a range of filtering criteria, we predicted two potential microRNA sequences for P. americana, pam-miR100-3p and pam-miR7. To confirm the expression of potential microRNAs (miRNAs) in American cockroach, a qRT-PCR approach was also employed. The data presented here offer the insights into the molecular foundation of sex differences in American cockroach, and the first report for the miRNAs in this species. In addition, the results can be used as a reference for unraveling candidate genes associated with the sex and reproduction of cockroaches.

  11. Hybrid origin and differentiation of two tetraploid Achillea species in East Asia: molecular, morphological and ecogeographical evidence.

    Science.gov (United States)

    Guo, Y-P; Vogl, C; Van Loo, M; Ehrendorfer, F

    2006-01-01

    Achillea (Asteraceae-Anthemideae) offers classical models for speciation by hybridization and polyploidy. Here, we test the suspected allotetraploid origin of two species, Achillea alpina and Achillea wilsoniana between phylogenetically distinct lineages in East Asia. A total of 421 AFLP bands from 169 individuals and 19 populations of five 2x- and two 4x-species were obtained. The data set was analysed with a newly developed model that accounts for polyploidy and assumes lack of recombination between the parental chromosome sets (i.e. disomic inheritance). A. alpina and A. wilsoniana then appear to be allotetraploids between Achillea acuminata-2x (sect. Ptarmica) and Achillea asiatica-2x (sect. Achillea). The two 4x-species share 44% and 48% of their AFLP bands with A. acuminata-2x, and 39% and 38% with A. asiatica-2x, respectively. Eight plastid haplotypes (A-H) were detected by polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) analyses. A. alpina-4x and A. wilsoniana-4x share haplotype F only with A. asiatica-2x. This is consistent with the hybrid origin(s) involving the latter as the maternal ancestor. This result corroborates our previous DNA sequence data, where A. alpina-4x and A. wilsoniana-4x are also placed close to A. asiatica-2x. Morphology, ecology, and amplified fragment length polymorphism (AFLP) profiles of the two 2x-species are distinct, whereas the two 4x-species, grouped as A. alpina aggregate, form a nearly continuous link between them. Considering all evidence, this 4x-aggregate is regarded as the product of a hybridization between genetically distant 2x-ancestors limited to China and adjacent areas: one A. acuminata-like, and the other A. asiatica-like. The allopolyploid A. alpina agg. exhibits considerable morphological variation and ecological flexibility, and has expanded throughout eastern Asia and to northern North America, far beyond the ranges of their presumed 2x-ancestors.

  12. Hybrid Adaptive Multilevel Monte Carlo Algorithm for Non-Smooth Observables of Itô Stochastic Differential Equations

    KAUST Repository

    Rached, Nadhir B.

    2013-12-01

    The Monte Carlo forward Euler method with uniform time stepping is the standard technique to compute an approximation of the expected payoff of a solution of an Itô SDE. For a given accuracy requirement TOL, the complexity of this technique for well behaved problems, that is the amount of computational work to solve the problem, is O(TOL-3). A new hybrid adaptive Monte Carlo forward Euler algorithm for SDEs with non-smooth coefficients and low regular observables is developed in this thesis. This adaptive method is based on the derivation of a new error expansion with computable leading-order terms. The basic idea of the new expansion is the use of a mixture of prior information to determine the weight functions and posterior information to compute the local error. In a number of numerical examples the superior efficiency of the hybrid adaptive algorithm over the standard uniform time stepping technique is verified. When a non-smooth binary payoff with either GBM or drift singularity type of SDEs is considered, the new adaptive method achieves the same complexity as the uniform discretization with smooth problems. Moreover, the new developed algorithm is extended to the MLMC forward Euler setting which reduces the complexity from O(TOL-3) to O(TOL-2(log(TOL))2). For the binary option case with the same type of Itô SDEs, the hybrid adaptive MLMC forward Euler recovers the standard multilevel computational cost O(TOL-2(log(TOL))2). When considering a higher order Milstein scheme, a similar complexity result was obtained by Giles using the uniform time stepping for one dimensional SDEs. The difficulty to extend Giles\\' Milstein MLMC method to the multidimensional case is an argument for the flexibility of our new constructed adaptive MLMC forward Euler method which can be easily adapted to this setting. Similarly, the expected complexity O(TOL-2(log(TOL))2) is reached for the multidimensional case and verified numerically.

  13. Measurement of the absolute optical properties and cerebral blood volume of the adult human head with hybrid differential and spatially resolved spectroscopy

    Energy Technology Data Exchange (ETDEWEB)

    Leung, Terence S [Department of Medical Physics and Bioengineering, University College London, Gower Street, London WC1E 6BT (United Kingdom); Tachtsidis, Ilias [Department of Medical Physics and Bioengineering, University College London, Gower Street, London WC1E 6BT (United Kingdom); Smith, Martin [Department of Neuroanaesthesia and Neurocritical Care, The National Hospital for Neurology and Neurosurgery, London (United Kingdom); Delpy, David T [Department of Medical Physics and Bioengineering, University College London, Gower Street, London WC1E 6BT (United Kingdom); Elwell, Clare E [Department of Medical Physics and Bioengineering, University College London, Gower Street, London WC1E 6BT (United Kingdom)

    2006-02-07

    A hybrid differential and spatially resolved spectroscopy (SRS) technique has been developed to measure absolute absorption coefficient ({mu}{sub a}), reduced scattering coefficient ({mu}'{sub s}) and cerebral blood volume (CBV) in the adult human head. A spectrometer with both differential and SRS capabilities has been used to carry out measurements in 12 subjects. Two versions of the calculation have been considered using the hybrid technique, with one considering water as a chromophore as well as oxy- and deoxy-haemoglobin, and one ignoring water. The CBV has also been measured using a previously described technique based on changing the arterial saturation (SaO{sub 2}) measured separately by a pulse oximeter, resulting in mean {+-} SD CBV{sup a} (intra-individual coefficient of variation) = 2.22 {+-} 1.06 ml/100 g (29.9%). (The superscript on CBV indicates the different calculation basis.) Using the hybrid technique with water ignored, CBV{sup 0} = 3.18 {+-} 0.73 ml/100 g (10.0%), {mu}{sup 0}{sub a}(813 nm) = 0.010 {+-} 0.003 mm{sup -1} and {mu}'{sup 0}{sub s}(813 nm) = 1.19 {+-} 0.55 mm{sup -1} (data quoted at 813 nm). With water considered, CBV{sup w} = 3.05 {+-} 0.77 ml/100 g (10.5%), {mu}{sup w}{sub a}(813 nm) = 0.010 {+-} 0.003 mm{sup -1} and {mu}'{sup w}{sub s}(813 nm) = 1.28 {+-} 0.56 mm{sup -1}. The mean biases between CBV{sup 0}/CBV{sup w}, CBV{sup 0}/CBV{sup a} and CBV{sup w}/CBV{sup a} are 0.14 {+-} 0.09, 0.79 {+-} 1.22 and 0.65 {+-} 1.24 ml/100 g. The mean biases between {mu}{sup 0}{sub a}(813 nm)/{mu}{sup w}{sub a}(813 nm) and {mu}'{sup 0}{sub s}(813 nm)/{mu}'{sup w}{sub s}(813 nm) are (5.9 {+-} 10.0) x 10{sup -4} mm{sup -1} and -0.084 {+-} 0.266 mm{sup -1}, respectively. The method we describe extends the functionality of the current SRS instrumentation.

  14. Identification of differentially expressed genes in Tetrahymena thermophila in response to dichlorodiphenyltrichloroethane (DDT) by suppression subtractive hybridization.

    Science.gov (United States)

    Miao, Wei; Yu, Ting; Orias, Eduardo; Wan, Mingliang; Fu, Chenjie

    2006-06-01

    The insecticide dichlorodiphenyltrichloroethane (DDT) is persistent in the environment, and continues to cause health problems. Tetrahymena has potential as a model organism for assaying low levels of DDT and for analysing the mechanisms of its toxicity. We constructed the suppression subtractive hybridization library of T. thermophila exposed to DDT, and screened out 90 Expressed Sequence Tags whose expressions were significantly up- or downregulated with DDT treatment. From this, a series of important genes related to the DDT metabolism and detoxification were discovered, such as P450 gene, glutathione S-transferase gene and sterol carrier protein 2 gene. Furthermore, their expressions under different concentrations of DDT treatment were detected by real-time fluorescent quantitative PCR. The results show that Tetrahymena is a relevant and useful model organism for detecting DDT in the environment and for discovering biomarkers that can be used to develop specific bio-reporters at the molecular and genomic levels.

  15. A Hybrid One-Way ANOVA Approach for the Robust and Efficient Estimation of Differential Gene Expression with Multiple Patterns

    OpenAIRE

    Mohammad Manir Hossain Mollah; Rahman Jamal; Norfilza Mohd Mokhtar; Roslan Harun; Md. Nurul Haque Mollah

    2015-01-01

    Background Identifying genes that are differentially expressed (DE) between two or more conditions with multiple patterns of expression is one of the primary objectives of gene expression data analysis. Several statistical approaches, including one-way analysis of variance (ANOVA), are used to identify DE genes. However, most of these methods provide misleading results for two or more conditions with multiple patterns of expression in the presence of outlying genes. In this paper, an attempt ...

  16. Osteoblast differentiation is enhanced by a nano-to-micro hybrid titanium surface created by Yb:YAG laser irradiation.

    Science.gov (United States)

    Mariscal-Muñoz, Eduardo; Costa, Carlos A S; Tavares, Hewerson S; Bianchi, Jonas; Hebling, Josimeri; Machado, João P B; Lerner, Ulf H; Souza, Pedro P C

    2016-04-01

    The aim of this study was to analyze the capacity of a new modified laser surface to stimulate calvarial osteoblasts isolated from neonatal mouse bones to differentiate and form mineralized nodules. Titanium discs were subjectezd or not to laser irradiation according to specific parameters and characterized. Osteoblasts isolated from neonatal mouse calvaria were cultured over the discs, and the capacity of these cells to proliferate (MTT assay), form mineralized nodules (Alizarin red assay), and enhance alkaline phosphatase activity (ALPase activity) was analyzed. Real-time PCR was used for quantification of gene expression. Laser-irradiated titanium discs (L) presented a rough nano-to-micrometric oxidized surface contrasting with the smooth pattern on polished discs (P). The Ra on the micrometric level increased from 0.32 ± 0.01 μm on P surfaces to 10.57 ± 0.39 μm on L surfaces. When compared with P, L promoted changes in osteoblast morphology, increased mineralized nodule formation in osteoblasts cultured on the surfaces for 14 days, and enhanced ALPase activity at days 7 and 14. Transcription factors triggering osteoblast differentiation (Runx2 and Sp7) and genes encoding the bone extracellular matrix proteins collagen type-1 (Col1a1), osteopontin (Spp1), and osteocalcin (Bglap) were upregulated in cells on L surfaces compared with those on P surfaces at days 1-14. Laser treatment of titanium surfaces created a rough surface that stimulated osteoblast differentiation. Laser treatment of titanium generates a reproducible and efficient surface triggering osteoblast differentiation that can be of importance for osteointegration.

  17. Isolation and analysis of differentially expressed genes during asexual sporulation in liquid static culture of Ganoderma lucidum by suppression subtractive hybridization.

    Science.gov (United States)

    Xu, Jun-Wei; Zhao, Wei; Xu, Yi-Ning; Zhong, Jian-Jiang

    2012-04-01

    Ganoderma lucidum differentiates in liquid static culture by forming aerial mycelia and asexual spores, and this differentiation process is accompanied by higher production of anti-tumor compounds ganoderic acids. To gain an insight into the molecular events during asexual sporulation of G. lucidum, comparative transcriptome analysis using suppression subtractive hybridization (SSH) technique was performed to identify preferentially expressed genes in liquid static culture vs. in traditional shaking culture. After macroarray analysis of 1920 cDNAs from SSH library, 147 unigenes which exhibited high expression in static culture were identified. Among these sequences, putative translations of 88 unigenes possessed much similarity to known proteins involved in cell organization, signal transduction, cell metabolism, protein biosynthesis and transcription regulation; 13 had significant similarity to hypothetical proteins; the remaining 46 showed little or no similarity to GenBank sequences. RT-qPCR analysis confirmed increases in transcripts of selected genes under liquid static culture condition. The results of this study present the useful application of EST analysis on G. lucidum and provide preliminary indication of gene expression putatively involved in asexual sporulation process.

  18. Analysis of differentially expressed genes in the precocious line of Eimeria maxima and its parent strain using suppression subtractive hybridization and cDNA microarrays.

    Science.gov (United States)

    Dong, Hui; Lin, Jiaojiao; Han, Hongyu; Jiang, Lianlian; Zhao, Qiping; Zhu, Shunhai; Huang, Bing

    2011-04-01

    The precocious line of Eimeria spp., obtained by repeated passages of oocysts initially collected from feces of previously infected chickens, has unique phenotypes and plays an important role in immunizing chickens against coccidiosis. However, the genetic basis of precocious phenotype in Eimeria is still poorly understood. To investigate gene expression changes in sporulated oocysts between the precocious line of E. maxima and its parent strain, subtractive cDNA libraries were constructed by suppression subtractive hybridization (SSH). A total of 3,164 cDNA fragments were selected from the SSH cDNA libraries to fabricate cDNA microarrays and further identify the differentially expressed genes. The credibility of the microarray data was verified by real-time PCR. A total of 360 valid expressed sequence tags (ESTs) were obtained, which represented 32 unique sequences. Twenty-one genes were validated as downregulated and 11 genes as upregulated in the precocious line. Homology searching of the public sequence database showed that six genes encoded proteins homologous with previously reported proteins, including rhomboid-like protein and transhydrogenase of E. tenella, serpin, and cation-transporting ATPase of E. acervulina, a heat-shock protein of E. maxima, and a conserved hypothetical protein of Toxoplasma gondii. Thus, the remaining 26 ESTs have not been previously reported. Further characterization of these differentially expressed genes will be useful in understanding the genetic basis for the precocious phenotype in Eimeria spp.

  19. Identification of differentially expressed genes in the oviduct of two rabbit lines divergently selected for uterine capacity using suppression subtractive hybridization.

    Science.gov (United States)

    Ballester, M; Castelló, A; Peiró, R; Argente, M J; Santacreu, M A; Folch, J M

    2013-06-01

    Suppressive subtractive hybridization libraries from oviduct at 62 h post-mating of two lines of rabbits divergently selected for uterine capacity were generated to identify differentially expressed genes. A total of 438 singletons and 126 contigs were obtained by cluster assembly and sequence alignment of 704 expressed sequence tags (ESTs), of which 54% showed homology to known proteins of the non-redundant NCBI databases. Differential screening by dot blot validated 71 ESTs, of which 47 showed similarity to known genes. Transcripts of genes were functionally annotated in the molecular function and the biological process gene ontology categories using the BLAST2GO software and were assigned to reproductive developmental process, immune response, amino acid metabolism and degradation, response to stress and apoptosis terms. Finally, three interesting genes, PGR, HSD17B4 and ERO1L, were identified as overexpressed in the low line using RT-qPCR. Our study provides a list of candidate genes that can be useful to understanding the molecular mechanisms underlying the phenotypic differences observed in early embryo survival and development traits.

  20. Identification of genes differentially expressed in vivo by Metarhizium anisopliae in the hemolymph of Locusta migratoria using suppression-subtractive hybridization.

    Science.gov (United States)

    Zhang, Chuanbo; Xia, Yuxian

    2009-08-01

    Metarhizium anisopliae is an important insect pathogenic fungus widely used in biological pest control. The aim of this study was to identify genes differentially expressed in vivo by M. anisopliae CQMa102 in the hemolymph of infected Locusta migratoria. Suppression-subtractive hybridization was performed using cDNA generated from hyphal bodies purified from hemolymph and the fungus germinating and differentiating on locust wings. A total of 350/1,600 random clones screened by cDNA array dot blotting were sequenced, resulting in 120 uniquely expressed sequence tags (ESTs) that were up-regulated during colonization of hemolymph. Among these 120 ESTs, 42 (35.0%) had matches in the NR protein database, and 29 (24.2%) were significantly similar to known proteins involved in various cellular processes, including general metabolism, cell wall remodeling, protein synthesis, signal transduction and stress responses. In contrast, the remaining 78 ESTs (65.0%) either had low similarity in the NR database or represented novel genes. Semi-quantitative RT-PCR analysis of five randomly selected genes revealed that all were highly expressed in the host hemolymph. These results provide new insight into the underlying molecular mechanisms of adaptation to host hemolymph and may increase understanding of host-pathogen interactions.

  1. Fluorescence In Situ Hybridization for MDM2 Amplification as a Routine Ancillary Diagnostic Tool for Suspected Well-Differentiated and Dedifferentiated Liposarcomas: Experience at a Tertiary Center

    Directory of Open Access Journals (Sweden)

    Khin Thway

    2015-01-01

    Full Text Available Background. The assessment of MDM2 gene amplification by fluorescence in situ hybridization (FISH has become a routine ancillary tool for diagnosing atypical lipomatous tumor (ALT/well-differentiated liposarcoma and dedifferentiated liposarcoma (WDL/DDL in specialist sarcoma units. We describe our experience of its utility at our tertiary institute. Methods. All routine histology samples in which MDM2 amplification was assessed with FISH over a 2-year period were included, and FISH results were correlated with clinical and histologic findings. Results. 365 samples from 347 patients had FISH for MDM2 gene amplification. 170 were positive (i.e., showed MDM2 gene amplification, 192 were negative, and 3 were technically unsatisfactory. There were 122 histologically benign cases showing a histology:FISH concordance rate of 92.6%, 142 WDL/DDL (concordance 96.5%, and 34 cases histologically equivocal for WDL (concordance 50%. Of 64 spindle cell/pleomorphic neoplasms (in which DDL was a differential diagnosis, 21.9% showed MDM2 amplification. Of the cases with discrepant histology and FISH, all but 3 had diagnoses amended following FISH results. For discrepancies of benign histology but positive FISH, lesions were on average larger, more frequently in “classical” (intra-abdominal or inguinal sites for WDL/DDL and more frequently core biopsies. Discrepancies of malignant histology but negative FISH were smaller, less frequently in “classical” sites but again more frequently core biopsies. Conclusions. FISH has a high correlation rate with histology for cases with firm histologic diagnoses of lipoma or WDL/DDL. It is a useful ancillary diagnostic tool in histologically equivocal cases, particularly in WDL lacking significant histologic atypia or DDL without corresponding WDL component, especially in larger tumors, those from intra-abdominal or inguinal sites or core biopsies. There is a significant group of well-differentiated adipocytic neoplasms

  2. Facing Challenges in Differential Classical Conditioning Research: Benefits of a Hybrid Design for Simultaneous Electrodermal and Electroencephalographic Recording.

    Science.gov (United States)

    Pastor, M Carmen; Rehbein, Maimu Alissa; Junghöfer, Markus; Poy, Rosario; López, Raul; Moltó, Javier

    2015-01-01

    Several challenges make it difficult to simultaneously investigate central and autonomous nervous system correlates of conditioned stimulus (CS) processing in classical conditioning paradigms. Such challenges include, for example, the discrepant requirements of electroencephalography (EEG) and electrodermal activity (EDA) recordings with regard to multiple repetitions of conditions and sufficient trial duration. Here, we propose a MultiCS conditioning set-up, in which we increased the number of CSs, decreased the number of learning trials, and used trials of short and long durations for meeting requirements of simultaneous EEG-EDA recording in a differential aversive conditioning task. Forty-eight participants underwent MultiCS conditioning, in which four neutral faces (CS+) were paired four times each with aversive electric stimulation (unconditioned stimulus) during acquisition, while four different neutral faces (CS-) remained unpaired. When comparing after relative to before learning measurements, EEG revealed an enhanced centro-posterior positivity to CS+ vs. CS- during 368-600 ms, and subjective ratings indicated CS+ to be less pleasant and more arousing than CS-. Furthermore, changes in CS valence and arousal were strong enough to bias subjective ratings when faces of CS+/CS- identity were displayed with different emotional expression (happy, angry) in a post-experimental behavioral task. In contrast to a persistent neural and evaluative CS+/CS- differentiation that sustained multiple unreinforced CS presentations, electrodermal differentiation was rapidly extinguished. Current results suggest that MultiCS conditioning provides a promising paradigm for investigating pre-post-learning changes under minimal influences of extinction and overlearning of simple stimulus features. Our data also revealed methodological pitfalls, such as the possibility of occurring artifacts when combining different acquisition systems for central and peripheral

  3. C-Banding/DAPI and in situ hybridization reflect karyotype structure and sex chromosome differentiation in Humulus japonicus Siebold & Zucc.

    Science.gov (United States)

    Grabowska-Joachimiak, A; Mosiolek, M; Lech, A; Góralski, G

    2011-01-01

    Japanese hop (Humulus japonicus Siebold & Zucc.) was karyotyped by chromosome measurements, fluorescence in situ hybridization with rDNA and telomeric probes, and C-banding/DAPI. The karyotype of this species consists of sex chromosomes (XX in female and XY1Y2 in male plants) and 14 autosomes difficult to distinguish by morphology. The chromosome complement also shows a rather monotonous terminal distribution of telomeric repeats, with the exception of a pair of autosomes possessing an additional cluster of telomeric sequences located within the shorter arm. Using C-banding/DAPI staining and 5S and 45S rDNA probes we constructed a fluorescent karyotype that can be used to distinguish all autosome pairs of this species except for the 2 largest autosome pairs, lacking rDNA signals and having similar size and DAPI-banding patterns. Sex chromosomes of H. japonicus display a unique banding pattern and different DAPI fluorescence intensity. The X chromosome possesses only one brightly stained AT-rich terminal segment, the Y1 has 2 such segments, and the Y2 is completely devoid of DAPI signal. After C-banding/DAPI, both Y chromosomes can be easily distinguished from the rest of the chromosome complement by the increased fluorescence of their arms. We discuss the utility of these methods for studying karyotype and sex chromosome evolution in hops.

  4. Hybrid Adaptive Multilevel Monte Carlo Algorithm for Non-Smooth Observables of Itô Stochastic Differential Equations

    KAUST Repository

    Rached, Nadhir B.

    2014-01-06

    A new hybrid adaptive MC forward Euler algorithm for SDEs with singular coefficients and non-smooth observables is developed. This adaptive method is based on the derivation of a new error expansion with computable leading order terms. When a non-smooth binary payoff is considered, the new adaptive method achieves the same complexity as the uniform discretization with smooth problems. Moreover, the new developed algorithm is extended to the multilevel Monte Carlo (MLMC) forward Euler setting which reduces the complexity from O(TOL-3) to O(TOL-2(log(TOL))2). For the binary option case, it recovers the standard multilevel computational cost O(TOL-2(log(TOL))2). When considering a higher order Milstein scheme, a similar complexity result was obtained by Giles using the uniform time stepping for one dimensional SDEs, see [2]. The difficulty to extend Giles’ Milstein MLMC method to the multidimensional case is an argument for the flexibility of our new constructed adaptive MLMC forward Euler method which can be easily adapted to this setting. Similarly, the expected complexity O(TOL-2(log(TOL))2) is reached for the multidimensional case and verified numerically.

  5. Characterization by Suppression Subtractive Hybridization of Transcripts That Are Differentially Expressed in Leaves of Anthracnose-Resistant Ramie Cultivar.

    Science.gov (United States)

    Xuxia, Wang; Jie, Chen; Bo, Wang; Lijun, Liu; Hui, Jiang; Diluo, Tang; Dingxiang, Peng

    2012-01-01

    For the purpose of screening putative anthracnose resistance-related genes of ramie (Boehmeria nivea L. Gaud), a cDNA library was constructed by suppression subtractive hybridization using anthracnose-resistant cultivar Huazhu no. 4. The cDNAs from Huazhu no. 4, which were infected with Colletotrichum gloeosporioides, were used as the tester and cDNAs from uninfected Huazhu no. 4 as the driver. Sequencing analysis and homology searching showed that these clones represented 132 single genes, which were assigned to functional categories, including 14 putative cellular functions, according to categories established for Arabidopsis. These 132 genes included 35 disease resistance and stress tolerance-related genes including putative heat-shock protein 90, metallothionein, PR-1.2 protein, catalase gene, WRKY family genes, and proteinase inhibitor-like protein. Partial disease-related genes were further analyzed by reverse transcription PCR and RNA gel blot. These expressed sequence tags are the first anthracnose resistance-related expressed sequence tags reported in ramie.

  6. 翼型模型几何误差对气动性能影响的自动微分分析方法%An automatic differentiation method for uncertainty analysis due to airfoil configuration variation

    Institute of Scientific and Technical Information of China (English)

    徐林程; 王刚; 武洁; 叶正寅

    2014-01-01

    基于自动微分原理和 NS 方程有限体积方法建立了一套翼型敏感性导数计算方法和程序,可以一次性获得翼型不同气动力系数、压力分布对模型几何外形误差的敏感性导数和不确定度。计算结果表明,在跨声速范围内,即使翼型的外形误差只有63μm(弦长1m),也可以给翼型压力分布带来0.312(以来流动压为参考)量级的不确定度,而激波处的流动最为敏感。这种自动微分方法对于分析数值模拟结果的分散性、风洞试验结果的分散性或不确定性具有很好的指导意义。%Focused on the quantification of the uncertainties of areodynamics performance of airfoils with respect to geometry error,with a set of CFD program based on finite volume algorithm solving the Reynolds-Averaged Navier-Stokes equations with S-A turbulent model,adopting automatic differentiation method to reform the program simultaniously,all kinds of sensitive derivatives,uncertainties of all kinds of aerody-namic coefficients and pressure coefficients distribution resulting from geometry error could be obtained in one course of computation.As the computational results show,even if the geometry error is only 63 microns (while the length of chord is 1 meter),the pressure distribution of the walls could be influenced obviously with uncertainty quantity reaching 0.312 (taking dynamic pressure of the flow as reference)for an airfois in transonic flow,moreover,pressure attached to the place where shock wave stationed bears peak uncertainty. the results of method of automatic differentiation account for the dispersity of results of numeric simulations and wind tunnel experiments well.

  7. A Hybrid Optimization Algorithm Based on Artificial Glowworm Swarm and Differential Evolution%人工萤火虫与差分进化混合优化算法

    Institute of Scientific and Technical Information of China (English)

    张军丽; 周永权

    2011-01-01

    人工萤火虫优化算法在寻找函数全局最优值时存在着收敛速度慢、易陷入局部最优、收敛成功率和计算精度低等缺点,为此,文中将人工鱼群算法的觅食行为嵌入到人工萤火虫算法,并与差分进化算法融合,提出一种基于人工萤火虫与差分进化的混合优化算法.最后,通过4个典型测试函数和1个应用实例进行测试,结果表明所提出的混合算法收敛速度快,计算精度高,其整体逼近性能比基本人工萤火虫和差分进化算法更优.%When searching for the globally optimal solution of function, there exist some shortcomings in artificial glowworm swam optimization (GSO), such as the slow convergence speed, easily falling into the local optimum value, the low success rate of convergence and computational accuracy. This paper embeds predatory behavior of artificial fish swarm algorithm (AFSA) into GSO and proposes a hybrid optimization algorithm which combines the GSO with differential evolution (DE). Finally, the algorithm is put through four typical test functions and an application example. The results show that the hybrid algorithm has better convergence efficiency and higher computational precision, and its overall approximation performance is superior to basic artificial GSO and DE.

  8. Hybrid Action Systems

    DEFF Research Database (Denmark)

    Rönnkö, M.; Ravn, Anders Peter; Sere, K.

    2003-01-01

    In this paper we investigate the use of action systems with differential actions in the specifcation of hybrid systems. As the main contribution we generalize the definition of a differential action, allowing the use of arbitrary relations over model variables and their time-derivatives in modell......In this paper we investigate the use of action systems with differential actions in the specifcation of hybrid systems. As the main contribution we generalize the definition of a differential action, allowing the use of arbitrary relations over model variables and their time...... parallel composition. Moreover, as the strength of the action system formalism is the support for stepwise development by refinement, we investigate refinement involving a differential action. We show that, due to the predicate transformer semantics, standard action refinement techniques apply also...... to the differential action, thus, allowing stepwise development of hybrid systems Udgivelsesdato: JAN 1...

  9. Effect of micro-nano-hybrid structured hydroxyapatite bioceramics on osteogenic and cementogenic differentiation of human periodontal ligament stem cell via Wnt signaling pathway

    Directory of Open Access Journals (Sweden)

    Mao LX

    2015-11-01

    Full Text Available Lixia Mao,1,* Jiaqiang Liu,1,* Jinglei Zhao,1 Jiang Chang,2 Lunguo Xia,1 Lingyong Jiang,1 Xiuhui Wang,2 Kaili Lin,2,3 Bing Fang11Center of Craniofacial Orthodontics, Department of Oral and Cranio-maxillofacial Science, Top Priority Clinical Medical Center of Shanghai Municipal Commission of Health and Family Planning, Ninth People’s Hospital Affiliated to Shanghai Jiao Tong University, School of Medicine, Shanghai Jiao Tong University, 2State Key Laboratory of High Performance Ceramics and Superfine Microstructure, Shanghai Institute of Ceramics, Chinese Academy of Sciences, 3Shanghai Engineering Research Center of Tooth Restoration and Regeneration, School of Stomatology, Tongji University, Shanghai, People’s Republic of China*These authors contributed equally to this workAbstract: The surface structure of bioceramic scaffolds is crucial for its bioactivity and osteoinductive ability, and in recent years, human periodontal ligament stem cells have been certified to possess high osteogenic and cementogenic differential ability. In the present study, hydroxyapatite (HA bioceramics with micro-nano-hybrid surface (mnHA [the hybrid of nanorods and microrods] were fabricated via hydrothermal reaction of the α-tricalcium phosphate granules as precursors in aqueous solution, and the effects of mnHA on the attachment, proliferation, osteogenic and cementogenic differentiations of human periodontal ligament stem cells as well as the related mechanisms were systematically investigated. The results showed that mnHA bioceramics could promote cell adhesion, proliferation, alkaline phosphatase (ALP activity, and expression of osteogenic/cementogenic-related markers including runt-related transcription factor 2 (Runx2, ALP, osteocalcin (OCN, cementum attachment protein (CAP, and cementum protein (CEMP as compared to the HA bioceramics with flat and dense surface. Moreover, mnHA bioceramics stimulated gene expression of low-density lipoprotein receptor

  10. Identification of differentially expressed genes associated with bud dormancy release in tree peony (Paeonia suffruticosa) by suppression subtractive hybridization

    Institute of Scientific and Technical Information of China (English)

    HUANG Xin; ZHENG Guo-sheng; DAI Si-lan; GAI Shu-peng

    2008-01-01

    A subtractive cDNA library was developed to study genes associated with bud dormancy release in tree peonies. In order to identify genes that are highly expressed in buds released from dormancy, 588 clones were examined by differential screening. Of these, 185 clones were selected to be sequenced. A total of 37 unique sequences were obtained of which only 31 sequences have matches in the NCBI database or the Arabidopsis thaliana protein database. Semi-quantitative RT-PCR was used to confirm further the expression profiles for 12 transcripts identified within the subtraetive cDNA library. Gene ontology analyses indicated that many of the different genes identified have unknown or hypothetical functions while it is speculated that other genes play different molecular roles. In our study, genes involved in bud dormancy release were growth-related or stress-responsive, while low-temperature-induced ribosomal proteins may also play a role in bud dormancy release. Our results provide interesting information for further understanding of the molecular mechanism of bud dormancy release in tree peonies.

  11. A hybrid layerwise and differential quadrature method for in-plane free vibration of laminated thick circular arches

    Science.gov (United States)

    Malekzadeh, P.; Setoodeh, A. R.; Barmshouri, E.

    2008-08-01

    An accurate and efficient solution procedure based on the two-dimensional elasticity theory for free vibration of arbitrary laminated thick circular deep arches with some combinations of classical boundary conditions is introduced. In order to accurately represent the variation of strain across the thickness, the layerwise theory is used to approximate the displacement components in the radial direction. Employing Hamilton's principle, the discretized form of the equations of motion and the related boundary conditions in the radial direction are obtained. The resulting governing equations are then discretized using the differential quadrature method (DQM). After performing the convergence studies, new results for laminated arches with different set of boundary conditions are developed. Additionally, different values of the arch parameters such as opening angle, thickness-to-length and orthotropy ratios are considered. In all cases, comparisons with the results obtained using the finite element software 'ABAQUS' and also with those of the first- and higher-order shear deformation theories available in the literature are performed. Close agreements, especially with those of ABAQUS, are achieved.

  12. Suppression subtractive hybridization (SSH) combined with bioinformatics method: an integrated functional annotation approach for analysis of differentially expressed immune-genes in insects.

    Science.gov (United States)

    Badapanda, Chandan

    2013-01-01

    The suppression subtractive hybridization (SSH) approach, a PCR based approach which amplifies differentially expressed cDNAs (complementary DNAs), while simultaneously suppressing amplification of common cDNAs, was employed to identify immuneinducible genes in insects. This technique has been used as a suitable tool for experimental identification of novel genes in eukaryotes as well as prokaryotes; whose genomes have been sequenced, or the species whose genomes have yet to be sequenced. In this article, I have proposed a method for in silico functional characterization of immune-inducible genes from insects. Apart from immune-inducible genes from insects, this method can be applied for the analysis of genes from other species, starting from bacteria to plants and animals. This article is provided with a background of SSH-based method taking specific examples from innate immune-inducible genes in insects, and subsequently a bioinformatics pipeline is proposed for functional characterization of newly sequenced genes. The proposed workflow presented here, can also be applied for any newly sequenced species generated from Next Generation Sequencing (NGS) platforms.

  13. Differentially expressed genes in a flock of Chinese local-breed chickens infected with a subgroup J avian leukosis virus using suppression subtractive hybridization

    Directory of Open Access Journals (Sweden)

    Guiping Zhao

    2010-01-01

    Full Text Available Avian leukosis virus subgroup J (ALV-J is a new type of virus that mainly induces myeloid leukosis (ML in chickens. To further elucidate the pathogenesis of ALV-J infection and tumor development, expression profiles from the bone marrow tissue of 15 infected and 18 non-infected birds from a local-breed poultry-farm under naturally infected conditions, were analyzed by suppression-subtractive hybridization. The birds were diagnosed as ML+ (or ML- by specific ALV-J detection methods, involving serological tests for antigens and antibodies, and RT-PCR to detect viral RNA. A total of 59 partial gene sequences were revealed by differential screening of 496 forward and 384 reverse subtracted cDNA clones. Of these, 22 identified genes, including 8 up-regulated and 14 down-regulated, were related to immune functions, these genes being, MHC B-G antigen, translationally-controlled tumor protein (TPT1/TPTC, transferrin and ferritin, hemoglobin and Carbonic anhydrase. Four of the down-regulated genes were selected for further analysis, in view of their predicted roles in infection and immunity by real-time qRT-PCR, using RNA collected from the same birds as those used for SSH. The four genes were expressed at significantly lower levels (p < 0.001 in ALV-J infected birds than in non-infected ones.

  14. Toxic effect on tissues and differentially expressed genes in hepatopancreas identified by suppression subtractive hybridization of freshwater pearl mussel (Hyriopsis cumingii) following microcystin-LR challenge.

    Science.gov (United States)

    Yang, Ziyan; Wu, Hongjuan; Li, Yuan

    2012-07-01

    Microcystins are a family of potent hepatotoxins produced by freshwater cyanobacteria and can cause animal intoxications and human diseases. In this study, the effect of microcystin-LR (MC-LR) on the tissues of freshwater pearl mussel (Hyriopsis cumingii) was evaluated and differentially expressed genes in the hepatopancreas of the mussel exposed to MC-LR were identified. HPLC analysis of cell extracts from various tissues of the mussel indicated that the hepatopancreas had the highest MC-LR levels (55.78 ± 6.73 μg g⁻¹ DW) after 15-day exposure. The MC-LR concentration in gill or muscle was an order of magnitude less than in hepatopancreas or gonad. Subtractive cDNA library was constructed by suppression subtractive hybridization (SSH), and ∼400 positive clones were sequenced, from which 98 high quality sequences were obtained by BLAST analysis. The screening identified numerous genes involved in apoptosis, signal transduction, cytoskeletal remodel, innate immunity, material and energy metabolism, translation and transcription which were extensively discussed. The results of this study add large amount of information to the mussel genome data, and for the first time present the basic data on toxicity effect of MC-LR on mussel.

  15. Differentially expressed genes in a flock of Chinese local-breed chickens infected with a subgroup J avian leukosis virus using suppression subtractive hybridization.

    Science.gov (United States)

    Zhao, Guiping; Zheng, Maiqing; Chen, Jilan; Wen, Jie; Wu, Chunmei; Li, Wenjuan; Liu, Libo; Zhang, Yuan

    2010-01-01

    Avian leukosis virus subgroup J (ALV-J) is a new type of virus that mainly induces myeloid leukosis (ML) in chickens. To further elucidate the pathogenesis of ALV-J infection and tumor development, expression profiles from the bone marrow tissue of 15 infected and 18 non-infected birds from a local-breed poultry-farm under naturally infected conditions, were analyzed by suppression-subtractive hybridization. The birds were diagnosed as ML+ (or ML-) by specific ALV-J detection methods, involving serological tests for antigens and antibodies, and RT-PCR to detect viral RNA. A total of 59 partial gene sequences were revealed by differential screening of 496 forward and 384 reverse subtracted cDNA clones. Of these, 22 identified genes, including 8 up-regulated and 14 down-regulated, were related to immune functions, these genes being, MHC B-G antigen, translationally-controlled tumor protein (TPT1/TPTC), transferrin and ferritin, hemoglobin and Carbonic anhydrase. Four of the down-regulated genes were selected for further analysis, in view of their predicted roles in infection and immunity by real-time qRT-PCR, using RNA collected from the same birds as those used for SSH. The four genes were expressed at significantly lower levels (p < 0.001) in ALV-J infected birds than in non-infected ones.

  16. Molecular characterization, expression patterns, and polymorphism of a differentially expressed porcine gene (PYGM) isolated by suppression subtractive hybridization and two-dimensional gel electrophoresis analysis.

    Science.gov (United States)

    Xu, Yongjie; Yu, Wenmin; Feng, Xiaoting; Xie, Hongtao; Xiong, Yuanzhu

    2012-01-01

    Suppression subtractive hybridization was performed to detect the differences in gene expression of porcine longissimus dorsi muscles between Large White and Chinese Meishan pigs. An upregulated gene in Large White that shared high homology with human muscle glycogen phosphorylase (PYGM) was identified. The porcine PYGM gene contains an open reading frame encoding 842 amino acid residues with 26 and 283 nucleotides in the 5' and 3' untranslated regions, respectively. Tissue distribution analysis indicated that porcine PYGM mRNAs are highly expressed in all tissues. Expression pattern of PYGM was similar in the two breeds. Both breeds had the highest expression levels when 120 days old (p<0.01), and PYGM was upregulated during skeletal muscle development. A similar expression pattern of PYGM in protein level was also observed by differential proteome analysis of skeletal muscle development using two-dimensional gel electrophoresis and mass spectroscopy. The mRNA abundance of PYGM in Large White was higher than Meishan at all four stages (p<0.05). Moreover, a G/T mutation in exon 8 was identified and association analysis with meat quality traits showed that it was significantly associated with lean meat percentage (p<0.05). Our data may provide further insight into the molecular mechanisms responsible for breed-specific differences in porcine growth and meat quality.

  17. Enhancement of osteogenic differentiation of human adipose derived stem cells by the controlled release of platelet lysates from hybrid scaffolds produced by supercritical fluid foaming.

    Science.gov (United States)

    Santo, Vítor E; Duarte, Ana Rita C; Popa, Elena G; Gomes, Manuela E; Mano, João F; Reis, Rui L

    2012-08-20

    A new generation of scaffolds capable of acting not only as support for cells but also as a source of biological cues to promote tissue regeneration is currently a hot topic of in bone Tissue Engineering (TE) research. The inclusion of growth factor (GF) controlled release functionalities in the scaffolds is a possible strategy to achieve such goal. Platelet Lysate (PL) is an autologous source of GFs, providing several bioactive agents known to act on bone regeneration. In this study, chitosan-chondroitin sulfate nanoparticles loaded with PL were included in a poly(D,L-lactic acid) foam produced by supercritical fluid foaming. The tridimensional (3D) structures were then seeded with human adipose-derived stem cells (hASCs) and cultured in vitro under osteogenic stimulus. The osteogenic differentiation of the seeded hASCs was observed earlier for the PL-loaded constructs, as shown by the earlier alkaline phosphatase peak and calcium detection and stronger Runx2 expression at day 7 of culture, in comparison with the control scaffolds. Osteocalcin gene expression was upregulated in presence of PL during all culture period, which indicates an enhanced osteogenic induction. These results suggest the synergistic effect of PL and hASCs in combinatory TE strategies and support the potential of PL to increase the multifunctionality of the 3D hybrid construct for bone TE applications.

  18. Differentially expressed genes of Tetrahymena thermophila in response to tributyltin (TBT) identified by suppression subtractive hybridization and real time quantitative PCR.

    Science.gov (United States)

    Feng, Lifang; Miao, Wei; Wu, Yuxuan

    2007-02-15

    Tributyltin (TBT) is widely used as antifouling paints, agriculture biocides, and plastic stabilizers around the world, resulting in great pollution problem in aquatic environments. However, it has been short of the biomonitor to detect TBT in freshwater. We constructed the suppression subtractive hybridization library of Tetrahymena thermophila exposed to TBT, and screened out 101 Expressed Sequence Tags whose expressions were significantly up- or down-regulated with TBT treatment. From this, a series of genes related to the TBT toxicity were discovered, such as glutathione-S-transferase gene (down-regulated), plasma membrane Ca2+ ATPase isoforms 3 gene (up-regulated) and NgoA (up-regulated). Furthermore, their expressions under different concentrations of TBT treatment (0.5-40 ppb) were detected by real time fluorescent quantitative PCR. The differentially expressed genes of T. thermophila in response to TBT were identified, which provide the basic to make Tetrahymena as a sensitive, rapid and convenient TBT biomonitor in freshwater based on rDNA inducible expression system.

  19. Differentiation of Boc-protected alpha,delta-/delta,alpha- and beta,delta-/delta,beta-hybrid peptide positional isomers by electrospray ionization tandem mass spectrometry.

    Science.gov (United States)

    Raju, G; Ramesh, V; Srinivas, R; Sharma, G V M; Shoban Babu, B

    2010-06-01

    Two new series of Boc-N-alpha,delta-/delta,alpha- and beta,delta-/delta,beta-hybrid peptides containing repeats of L-Ala-delta(5)-Caa/delta(5)-Caa-L-Ala and beta(3)-Caa-delta(5)-Caa/delta(5)-Caa-beta(3)-Caa (L-Ala = L-alanine, Caa = C-linked carbo amino acid derived from D-xylose) have been differentiated by both positive and negative ion electrospray ionization (ESI) ion trap tandem mass spectrometry (MS/MS). MS(n) spectra of protonated isomeric peptides produce characteristic fragmentation involving the peptide backbone, the Boc-group, and the side chain. The dipeptide positional isomers are differentiated by the collision-induced dissociation (CID) of the protonated peptides. The loss of 2-methylprop-1-ene is more pronounced for Boc-NH-L-Ala-delta-Caa-OCH(3) (1), whereas it is totally absent for its positional isomer Boc-NH-delta-Caa-L-Ala-OCH(3) (7), instead it shows significant loss of t-butanol. On the other hand, second isomeric pair shows significant loss of t-butanol and loss of acetone for Boc-NH-delta-Caa-beta-Caa-OCH(3) (18), whereas these are insignificant for its positional isomer Boc-NH-beta-Caa-delta-Caa-OCH(3) (13). The tetra- and hexapeptide positional isomers also show significant differences in MS(2) and MS(3) CID spectra. It is observed that 'b' ions are abundant when oxazolone structures are formed through five-membered cyclic transition state and cyclization process for larger 'b' ions led to its insignificant abundance. However, b(1)(+) ion is formed in case of delta,alpha-dipeptide that may have a six-membered substituted piperidone ion structure. Furthermore, ESI negative ion MS/MS has also been found to be useful for differentiating these isomeric peptide acids. Thus, the results of MS/MS of pairs of di-, tetra-, and hexapeptide positional isomers provide peptide sequencing information and distinguish the positional isomers.

  20. Differential equations

    CERN Document Server

    Barbu, Viorel

    2016-01-01

    This textbook is a comprehensive treatment of ordinary differential equations, concisely presenting basic and essential results in a rigorous manner. Including various examples from physics, mechanics, natural sciences, engineering and automatic theory, Differential Equations is a bridge between the abstract theory of differential equations and applied systems theory. Particular attention is given to the existence and uniqueness of the Cauchy problem, linear differential systems, stability theory and applications to first-order partial differential equations. Upper undergraduate students and researchers in applied mathematics and systems theory with a background in advanced calculus will find this book particularly useful. Supplementary topics are covered in an appendix enabling the book to be completely self-contained.

  1. Identification of differentially-expressed genes potentially implicated in drought response in pitaya (Hylocereus undatus) by suppression subtractive hybridization and cDNA microarray analysis.

    Science.gov (United States)

    Fan, Qing-Jie; Yan, Feng-Xia; Qiao, Guang; Zhang, Bing-Xue; Wen, Xiao-Peng

    2014-01-01

    Drought is one of the most severe threats to the growth, development and yield of plant. In order to unravel the molecular basis underlying the high tolerance of pitaya (Hylocereus undatus) to drought stress, suppression subtractive hybridization (SSH) and cDNA microarray approaches were firstly combined to identify the potential important or novel genes involved in the plant responses to drought stress. The forward (drought over drought-free) and reverse (drought-free over drought) suppression subtractive cDNA libraries were constructed using in vitro shoots of cultivar 'Zihonglong' exposed to drought stress and drought-free (control). A total of 2112 clones, among which half were from either forward or reverse SSH library, were randomly picked up to construct a pitaya cDNA microarray. Microarray analysis was carried out to verify the expression fluctuations of this set of clones upon drought treatment compared with the controls. A total of 309 expressed sequence tags (ESTs), 153 from forward library and 156 from reverse library, were obtained, and 138 unique ESTs were identified after sequencing by clustering and blast analyses, which included genes that had been previously reported as responsive to water stress as well as some functionally unknown genes. Thirty six genes were mapped to 47 KEGG pathways, including carbohydrate metabolism, lipid metabolism, energy metabolism, nucleotide metabolism, and amino acid metabolism of pitaya. Expression analysis of the selected ESTs by reverse transcriptase polymerase chain reaction (RT-PCR) corroborated the results of differential screening. Moreover, time-course expression patterns of these selected ESTs further confirmed that they were closely responsive to drought treatment. Among the differentially expressed genes (DEGs), many are related to stress tolerances including drought tolerance. Thereby, the mechanism of drought tolerance of this pitaya genotype is a very complex physiological and biochemical process, in

  2. Hybrid Randomly Electrospun Poly(lactic-co-glycolic acid):Poly(ethylene oxide) (PLGA:PEO) Fibrous Scaffolds Enhancing Myoblast Differentiation and Alignment.

    Science.gov (United States)

    Evrova, Olivera; Hosseini, Vahid; Milleret, Vincent; Palazzolo, Gemma; Zenobi-Wong, Marcy; Sulser, Tullio; Buschmann, Johanna; Eberli, Daniel

    2016-11-23

    Cellular responses are regulated by their microenvironments, and engineered synthetic scaffolds can offer control over different microenvironment properties. This important relationship can be used as a tool to manipulate cell fate and cell responses for different biomedical applications. We show for the first time in this study how blending of poly(ethylene oxide) (PEO) to poly(lactic-co-glycolic acid) (PLGA) fibers to yield hybrid scaffolds changes the physical and mechanical properties of PLGA fibrous scaffolds and in turn affects cellular response. For this purpose we employed electrospinning to create fibrous scaffolds mimicking the basic structural properties of the native extracellular matrix. We introduced PEO to PLGA electrospun fibers by spinning a blend of PLGA:PEO polymer solutions in different ratios. PEO served as a sacrificial component within the fibers upon hydration, leading to pore formation in the fibers, fiber twisting, increased scaffold disintegration, and hydrophilicity, decreased Young's modulus, and significantly improved strain at break of initially electrospun scaffolds. We observed that the blended PLGA:PEO fibrous scaffolds supported myoblast adhesion and proliferation and resulted in increased myotube formation and self-alignment, when compared to PLGA-only scaffolds, even though the scaffolds were randomly oriented. The 50:50 PLGA:PEO blended scaffold showed the most promising results in terms of mechanical properties, myotube formation, and alignment, suggesting an optimal microenvironment for myoblast differentiation from the PLGA:PEO blends tested. The explored approach for tuning fiber properties can easily extend to other polymeric scaffolds and provides a valuable tool to engineer fibrillar microenvironments for several biomedical applications.

  3. Disaggregating polyploidy, parental genome dosage and hybridity contributions to heterosis in Arabidopsis thaliana

    NARCIS (Netherlands)

    Fort, Antoine; Ryder, Peter; Mckeown, P.C.; Wijnen, Cris; Aarts, M.G.; Sulpice, Ronan; Spillane, Charles

    2016-01-01

    Heterosis is the phenomenon whereby hybrid offspring of genetically divergent parents display superior characteristics compared with their parents. Although hybridity and polyploidy can influence heterosis in hybrid plants, the differential contributions of hybridity vs polyploidy to heterosis ef

  4. Automatic Fiscal Stabilizers

    Directory of Open Access Journals (Sweden)

    Narcis Eduard Mitu

    2013-11-01

    Full Text Available Policies or institutions (built into an economic system that automatically tend to dampen economic cycle fluctuations in income, employment, etc., without direct government intervention. For example, in boom times, progressive income tax automatically reduces money supply as incomes and spendings rise. Similarly, in recessionary times, payment of unemployment benefits injects more money in the system and stimulates demand. Also called automatic stabilizers or built-in stabilizers.

  5. Identification of a male meiosis-specific gene, Tcte2, which is differentially spliced in species that form sterile hybrids with laboratory mice and deleted in t chromosomes showing meiotic drive.

    Science.gov (United States)

    Braidotti, G; Barlow, D P

    1997-06-01

    Tcte2 (t complex testes expressed 2) is a male meiosis-specific gene that maps to band 3.3 of mouse chromosome 17. Two distinct male fertility defects, hybrid sterility and transmission ratio distortion, have previously been mapped to this region. Hybrid sterility arises in crosses between different mouse species and the F1 generation males have defects in the first meiotic division and are sterile. Transmission ratio distortion is shown by males heterozygous for the t haplotype form of chromosome 17 and is a type of meiotic drive in which male gametes function unequally at fertilization. The Tcte2 gene expresses a coding mRNA and a number of putative non-ORF transcripts in meiosis I. A deletion of the 5' part of the locus abolishes Tcte2 expression on the t haplotype form of chromosome 17. Additionally, the series of putative non-ORF RNAs at the Tcte2 locus are differentially spliced in species that show hybrid sterility when crossed to laboratory mice. The identification of polymorphisms in t haplotypes and in different mouse species allows alleles of Tcte2 to be proposed as candidates for loci which contribute to both meiotic drive and hybrid sterility phenotypes. While theoretical considerations have previously been used to propose that speciation and meiotic drive involve alleles of the same genes, Tcte2 is the first cloned candidate gene to support this link at a molecular level.

  6. Comprehensive immunohistochemical analysis of Her-2/neu oncoprotein overexpression in breast cancer: HercepTest (Dako) for manual testing and Her-2/neuTest 4B5 (Ventana) for Ventana BenchMark automatic staining system with correlation to results of fluorescence in situ hybridization (FISH).

    Science.gov (United States)

    Mayr, Doris; Heim, Sibylle; Werhan, Cedric; Zeindl-Eberhart, Evelyn; Kirchner, Thomas

    2009-03-01

    Overexpression of Her-2/neu-oncoprotein is used as marker for Herceptin therapy. To investigate the sensitivity and specificity of automatic immunohistochemistry (Benchmark, Ventana), we compared the results to the manual testing (Dako) in 130 breast carcinomas and validated the results by fluorescence in situ hybridization (FISH). Manual and automatic immunohistochemistry of Her-2/neu-oncoprotein using two different antibodies (HercepTest, Her-2/neuTest 4B5) was analyzed. FISH was performed in all cases with uncertain or strong overexpression in either immunohistochemical stainings or with different immunohistochemical results. Same immunohistochemical results were seen in 73.8%. Two cases with overexpression, detected with Her-2/neuTest 4B5 and confirmed by FISH, showed no overexpression using HercepTest. From 21 cases with 2+ by Her-2/neuTest 4B5, 15 cases had no gene amplification (two of them with 3+ HercepTest); three cases showed a gene amplification (one of them with failing overexpression by HercepTest); two other cases were polysomic; one could not be analyzed. Ventana immunohistochemistry seems to be of same reliability like Dako with a little better concordance to FISH in our study.

  7. Differential stability of 2'F-ANA*RNA and ANA*RNA hybrid duplexes: roles of structure, pseudohydrogen bonding, hydration, ion uptake and flexibility.

    Science.gov (United States)

    Watts, Jonathan K; Martín-Pintado, Nerea; Gómez-Pinto, Irene; Schwartzentruber, Jeremy; Portella, Guillem; Orozco, Modesto; González, Carlos; Damha, Masad J

    2010-04-01

    Hybrids of RNA with arabinonucleic acids 2'F-ANA and ANA have very similar structures but strikingly different thermal stabilities. We now present a thorough study combining NMR and other biophysical methods together with state-of-the-art theoretical calculations on a fully modified 10-mer hybrid duplex. Comparison between the solution structure of 2'F-ANA*RNA and ANA*RNA hybrids indicates that the increased binding affinity of 2'F-ANA is related to several subtle differences, most importantly a favorable pseudohydrogen bond (2'F-purine H8) which contrasts with unfavorable 2'-OH-nucleobase steric interactions in the case of ANA. While both 2'F-ANA and ANA strands maintained conformations in the southern/eastern sugar pucker range, the 2'F-ANA strand's structure was more compatible with the A-like structure of a hybrid duplex. No dramatic differences are found in terms of relative hydration for the two hybrids, but the ANA*RNA duplex showed lower uptake of counterions than its 2'F-ANA*RNA counterpart. Finally, while the two hybrid duplexes are of similar rigidities, 2'F-ANA single strands may be more suitably preorganized for duplex formation. Thus the dramatically increased stability of 2'F-ANA*RNA and ANA*RNA duplexes is caused by differences in at least four areas, of which structure and pseudohydrogen bonding are the most important.

  8. Hybrid differential evolution algorithm for fuzzy dependent-chance programming model%求解模糊相关机会规划模型的混合差分进化算法

    Institute of Scientific and Technical Information of China (English)

    王林; 富庆亮; 曾宇容

    2011-01-01

    针对不确定规划领域中存在的模糊相关机会规划模型,基于群体智能的差分进化算法,设计一种新的求解模糊相关机会规划模型的混合智能算法.该算法基于粒子群优化算法对差分进化算法进行改进,并运用模糊模拟技术对模糊相关机会规划模型进行分析和数值求解,无需像传统的基于遗传算法的混合智能算法需要很长时间并经过复杂的计算才能得到合理的结果.最后,通过实例表明了所提混合智能算法的合理性和有效性.%Aiming at the existing fuzzy dependent-chance programming model in uncertainty planning field and the optimization approach of group intelligence-differential evolution algorithm, a novel hybrid intelligent algorithm for fuzzy dependent-chance programming models is designed. The proposed algorithm uses hybrid differential evolution algorithm improved by particle swarm optimization algorithm and fuzzy simulation to solve this kind of programming problems. It does not need a long time and complex calculations to get reasonable results like the hybrid intelligent algorithm based on traditional genetic algorithm. Numerical examples show the rationality and effectiveness of the proposed hybrid intelligent algorithm.

  9. Mediation and Automatization.

    Science.gov (United States)

    Hutchins, Edwin

    This paper discusses the relationship between the mediation of task performance by some structure that is not inherent in the task domain itself and the phenomenon of automatization, in which skilled performance becomes effortless or phenomenologically "automatic" after extensive practice. The use of a common simple explicit mediating…

  10. Digital automatic gain control

    Science.gov (United States)

    Uzdy, Z.

    1980-01-01

    Performance analysis, used to evaluated fitness of several circuits to digital automatic gain control (AGC), indicates that digital integrator employing coherent amplitude detector (CAD) is best device suited for application. Circuit reduces gain error to half that of conventional analog AGC while making it possible to automatically modify response of receiver to match incoming signal conditions.

  11. Focusing Automatic Code Inspections

    NARCIS (Netherlands)

    Boogerd, C.J.

    2010-01-01

    Automatic Code Inspection tools help developers in early detection of defects in software. A well-known drawback of many automatic inspection approaches is that they yield too many warnings and require a clearer focus. In this thesis, we provide such focus by proposing two methods to prioritize

  12. Identification and analysis of differentially expressed genes involved in dark-induced photoperiod response and senescence of soybean leaves by suppression subtractive hybridization

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    A cDNA subtractive library enriched for dark-induced up-regulated ESTs was constructed by suppression subtractive hybridization(SSH) from leaf tissues of soybean cultivar DongNong L13 treated with short-day(8-h light/16-h dark) and long-day(16-h light/8-h dark) conditions.A total of 148 clones were sequenced,representing 76 unique ESTs which corresponded to about 20% of 738 clones from the cDNA library and showed a significant up-regulation of at least three fold verified by dot blot hybridization.The putat...

  13. Differentiation of Moraxella nonliquefaciens, M. lacunata, and M. bovis by using multilocus enzyme electrophoresis and hybridization with pilin-specific DNA probes.

    Science.gov (United States)

    Tønjum, T; Caugant, D A; Bøvre, K

    1992-12-01

    Genetic relationships among strains of Moraxella nonliquefaciens, M. lacunata, and M. bovis were studied by using multilocus enzyme electrophoresis and DNA-DNA hybridization. The 74 isolates analyzed for electrophoretic variation at 12 enzyme loci were assigned to 59 multilocus genotypes. The multilocus genotypes were grouped in four major clusters, one representing strains of M. nonliquefaciens, two representing strains of M. lacunata, and one comprising strains of M. bovis and the single strain of M. equi analyzed. DNA-DNA hybridization with total genomic probes also revealed four major distinctive entities that corresponded to those identified by multilocus enzyme electrophoresis. The two distinct clusters recognized among the M. lacunata strains apparently corresponded to the species previously designated M. lacunata and M. liquefaciens. Distinction of the four entities was improved by hybridization with polymerase chain reaction products of nonconserved parts of pilin genes as DNA probes. With these polymerase chain reaction probes, new isolates of M. nonliquefaciens, M. lacunata, M. liquefaciens, and M. bovis can be identified easily by hybridization.

  14. Word Automaticity of Tree Automatic Scattered Linear Orderings Is Decidable

    CERN Document Server

    Huschenbett, Martin

    2012-01-01

    A tree automatic structure is a structure whose domain can be encoded by a regular tree language such that each relation is recognisable by a finite automaton processing tuples of trees synchronously. Words can be regarded as specific simple trees and a structure is word automatic if it is encodable using only these trees. The question naturally arises whether a given tree automatic structure is already word automatic. We prove that this problem is decidable for tree automatic scattered linear orderings. Moreover, we show that in case of a positive answer a word automatic presentation is computable from the tree automatic presentation.

  15. Hybrid Baryons

    CERN Document Server

    Page, P R

    2003-01-01

    We review the status of hybrid baryons. The only known way to study hybrids rigorously is via excited adiabatic potentials. Hybrids can be modelled by both the bag and flux-tube models. The low-lying hybrid baryon is N 1/2^+ with a mass of 1.5-1.8 GeV. Hybrid baryons can be produced in the glue-rich processes of diffractive gamma N and pi N production, Psi decays and p pbar annihilation.

  16. Automatic validation of numerical solutions

    DEFF Research Database (Denmark)

    Stauning, Ole

    1997-01-01

    This thesis is concerned with ``Automatic Validation of Numerical Solutions''. The basic theory of interval analysis and self-validating methods is introduced. The mean value enclosure is applied to discrete mappings for obtaining narrow enclosures of the iterates when applying these mappings...... is the possiblility to combine the three methods in an extremely flexible way. We examine some applications where this flexibility is very useful. A method for Taylor expanding solutions of ordinary differential equations is presented, and a method for obtaining interval enclosures of the truncation errors incurred...... with intervals as initial values. A modification of the mean value enclosure of discrete mappings is considered, namely the extended mean value enclosure which in most cases leads to even better enclosures. These methods have previously been described in connection with discretizing solutions of ordinary...

  17. A Robust Stability and Control Theory for Hybrid Dynamical Systems

    Science.gov (United States)

    2006-09-30

    IEEE Transactions on Automatic Control , to...Dual Linear Differential Inclusions", IEEE Transactions on Automatic Control , Vol. 51, Issue 4, April 2006, pp. 661-666. D. Liberzon and J. Hespanha...34Stabilization of nonlinear systems with limited information feedback", IEEE Transactions on Automatic Control , vol. 50, no. 6, pp. 910-915,

  18. Differentiation of Moraxella nonliquefaciens, M. lacunata, and M. bovis by using multilocus enzyme electrophoresis and hybridization with pilin-specific DNA probes.

    OpenAIRE

    1992-01-01

    Genetic relationships among strains of Moraxella nonliquefaciens, M. lacunata, and M. bovis were studied by using multilocus enzyme electrophoresis and DNA-DNA hybridization. The 74 isolates analyzed for electrophoretic variation at 12 enzyme loci were assigned to 59 multilocus genotypes. The multilocus genotypes were grouped in four major clusters, one representing strains of M. nonliquefaciens, two representing strains of M. lacunata, and one comprising strains of M. bovis and the single st...

  19. Ecological differentiation, lack of hybrids involving diploids, and asymmetric gene flow between polyploids in narrow contact zones of Senecio carniolicus (syn. Jacobaea carniolica, Asteraceae).

    Science.gov (United States)

    Hülber, Karl; Sonnleitner, Michaela; Suda, Jan; Krejčíková, Jana; Schönswetter, Peter; Schneeweiss, Gerald M; Winkler, Manuela

    2015-03-01

    Areas of immediate contact of different cytotypes offer a unique opportunity to study evolutionary dynamics within heteroploid species and to assess isolation mechanisms governing coexistence of cytotypes of different ploidy. The degree of reproductive isolation of cytotypes, that is, the frequency of heteroploid crosses and subsequent formation of viable and (partly) fertile hybrids, plays a crucial role for the long-term integrity of lineages in contact zones. Here, we assessed fine-scale distribution, spatial clustering, and ecological niches as well as patterns of gene flow in parental and hybrid cytotypes in zones of immediate contact of di-, tetra-, and hexaploid Senecio carniolicus (Asteraceae) in the Eastern Alps. Cytotypes were spatially separated also at the investigated microscale; the strongest spatial separation was observed for the fully interfertile tetra- and hexaploids. The three main cytotypes showed highly significant niche differences, which were, however, weaker than across their entire distribution ranges in the Eastern Alps. Individuals with intermediate ploidy levels were found neither in the diploid/tetraploid nor in the diploid/hexaploid contact zones indicating strong reproductive barriers. In contrast, pentaploid individuals were frequent in the tetraploid/hexaploid contact zone, albeit limited to a narrow strip in the immediate contact zone of their parental cytotypes. AFLP fingerprinting data revealed introgressive gene flow mediated by pentaploid hybrids from tetra- to hexaploid individuals, but not vice versa. The ecological niche of pentaploids differed significantly from that of tetraploids but not from hexaploids.

  20. Identification of Differentially Expressed Genes During Anther Abortion of Taigu Genic Male Sterile Wheat by Combining Suppression Subtractive Hybridization and cDNA Array

    Institute of Scientific and Technical Information of China (English)

    Qing-Shan Chang; Rong-Hua Zhou; Xiu-Ying Kong; Zeng-Liang Yu; Ji-Zeng Jia

    2006-01-01

    Taigu Genic Male Sterile Wheat (TGMSW; Triticum aestivum L.), a dominant genic male sterile germplasm, is of considerable value in the genetic improvement of wheat because of its stable inherence, complete male abortion, and high cross-fertilization rate. To identify specially transcribed genes in sterile anther, a suppression subtractive hybridization (SSH) library was constructed with sterile anther as the tester and fertile anther as the driver. A total of 2 304 SSH inserts amplified by polymerase chain reaction were arrayed using robotic printing. The cDNA arrays were hybridized with 32P-labeled probes prepared from the RNA of forward- and reverse-subtracted anthers. Ninety-six clones were scored as upregulated in sterile anthers compared with the corresponding fertile anthers and some clones were selected for sequencing and analysis in GenBank. Based on their putative functions, 87 non-redundant clones were classified into the following groups: (i) eight genes involved in metabolic processes; (ii) four material transportation genes;(iii) three signal transduction-associated genes; (iv) four stress response and senescence-associated protein genes; (v) seven other functional protein genes; (vi) five genes with no known function; and (vii)another 56 genes with no match to the databases. To test the hybridization efficiency, eight genes were selected and analyzed by Northern blot. The results of the present study provide a comprehensive overview of the genes and gene products involved in anther abortion in TGMSW.

  1. Automatic Program Development

    DEFF Research Database (Denmark)

    by members of the IFIP Working Group 2.1 of which Bob was an active member. All papers are related to some of the research interests of Bob and, in particular, to the transformational development of programs and their algorithmic derivation from formal specifications. Automatic Program Development offers......Automatic Program Development is a tribute to Robert Paige (1947-1999), our accomplished and respected colleague, and moreover our good friend, whose untimely passing was a loss to our academic and research community. We have collected the revised, updated versions of the papers published in his...... honor in the Higher-Order and Symbolic Computation Journal in the years 2003 and 2005. Among them there are two papers by Bob: (i) a retrospective view of his research lines, and (ii) a proposal for future studies in the area of the automatic program derivation. The book also includes some papers...

  2. Automatic text summarization

    CERN Document Server

    Torres Moreno, Juan Manuel

    2014-01-01

    This new textbook examines the motivations and the different algorithms for automatic document summarization (ADS). We performed a recent state of the art. The book shows the main problems of ADS, difficulties and the solutions provided by the community. It presents recent advances in ADS, as well as current applications and trends. The approaches are statistical, linguistic and symbolic. Several exemples are included in order to clarify the theoretical concepts.  The books currently available in the area of Automatic Document Summarization are not recent. Powerful algorithms have been develop

  3. Automatic Camera Control

    DEFF Research Database (Denmark)

    Burelli, Paolo; Preuss, Mike

    2014-01-01

    Automatically generating computer animations is a challenging and complex problem with applications in games and film production. In this paper, we investigate howto translate a shot list for a virtual scene into a series of virtual camera configurations — i.e automatically controlling the virtual...... camera. We approach this problem by modelling it as a dynamic multi-objective optimisation problem and show how this metaphor allows a much richer expressiveness than a classical single objective approach. Finally, we showcase the application of a multi-objective evolutionary algorithm to generate a shot...

  4. 不同杂交水稻籽粒灌浆期叶片蛋白的差异表达分析%Analysis of differential expression of leaf proteins in different hybrid rice during grain-filling

    Institute of Scientific and Technical Information of China (English)

    黄锦文; 李忠; 陈军; 张志兴; 李奇松; 郑家团; 林文雄

    2011-01-01

    为明确超级杂交水稻高产形成的分子机理,以超级杂交水稻"Ⅱ优航2号"为试验材料,杂交水稻"汕优63"为对照,运用双向电泳结合质谱技术,比较分析了籽粒灌浆过程中两种不同"源"类型杂交水稻叶片蛋白的差异表达情况.结果显示,两种不同类型水稻叶片蛋白中共有22个蛋白点出现显著差异表达,其中有20个蛋白功能得到鉴定.通过对差异蛋白功能及表达丰度的分析,相对于"汕优63","Ⅱ优航2号"在灌浆期光合代谢、抗逆反应、基因转录表达、细胞生长、能量代谢等生理活动过程中表现出较大优势,是其叶片在籽粒灌浆期"源"优势的主要体现.本研究从差异蛋白水平明确了航天超级杂交稻高产形成的"源"特征,丰富了籽粒灌浆的"源、库、流"理论,为超级杂交水稻育种提供理论依据.%To further clarify molecular metabolism of high yield super-hybrid rice, this paper studied differential expression patterns of leaf proteins in super-hybrid combinations “Ⅱ Youhang No. 2” and hybrid combinations “Shanyou 63” during grain-filling. The proteomic approach, which was based on two-dimensional electrophoresis (2-DE) and mass spectrometry (MS) was used in the study.A total of 22 differentially expressed proteins (at a significant level) were noted, and 20 of which were eventually identified. Further analysis of relative functions and expression abundances showed advantages of “Ⅱ Youhang No. 2” in photosynthetic metabolism,defense, gene-transcript regulation, cell growth, energy metabolism, compared with “Xianyou 63”. The advantages maybe the internal agents of “source” property of “Ⅱ Youhang No. 2” leaf in grain-filling stage. The study revealed the source properties of high yield super-hybrid “Ⅱ Youhang No. 2” at differential proteomic levels. This, to some extent, enriched the source-sink-flow theory and provided a theoretical basis for super-hybrid rice

  5. Ants exhibit asymmetric hybridization in a mosaic hybrid zone.

    Science.gov (United States)

    Purcell, Jessica; Zahnd, Sacha; Athanasiades, Anouk; Türler, Rebecca; Chapuisat, Michel; Brelsford, Alan

    2016-10-01

    Research on hybridization between species provides unparalleled insights into the pre- and postzygotic isolating mechanisms that drive speciation. In social organisms, colony-level incompatibilities may provide additional reproductive barriers not present in solitary species, and hybrid zones offer an opportunity to identify these barriers. Here, we use genotyping-by-sequencing to sequence hundreds of markers in a hybrid zone between two socially polymorphic ant species, Formica selysi and Formica cinerea. We characterize the zone, determine the frequency of hybrid workers, infer whether hybrid queens or males are produced and investigate whether hybridization is influenced by colony social organization. We also compare cuticular hydrocarbon profiles and aggression levels between the two species. The hybrid zone exhibits a mosaic structure. The asymmetric distribution of hybrids skewed towards F. cinerea suggests a pattern of unidirectional nuclear gene flow from F. selysi into F. cinerea. The occurrence of backcrossed individuals indicates that hybrid queens and/or males are fertile, and the presence of the F. cinerea mitochondrial haplotype in 97% of hybrids shows that successful F1 hybrids will generally have F. cinerea mothers and F. selysi fathers. We found no evidence that social organization contributes to speciation, because hybrids occur in both single-queen and multiple-queen colonies. Strongly differentiated cuticular hydrocarbon profiles and heightened interspecific aggression further reveal that species recognition cues are both present and perceived. The discovery of fertile hybrids and asymmetrical gene flow is unusual in ants, and this hybrid zone will therefore provide an ideal system with which to investigate speciation in social insects.

  6. Smart hybrid rotary damper

    Science.gov (United States)

    Yang, C. S. Walter; DesRoches, Reginald

    2014-03-01

    This paper develops a smart hybrid rotary damper using a re-centering smart shape memory alloy (SMA) material as well as conventional energy-dissipating metallic plates that are easy to be replaced. The ends of the SMA and steel plates are inserted in the hinge. When the damper rotates, all the plates bend, providing energy dissipating and recentering characteristics. Such smart hybrid rotary dampers can be installed in structures to mitigate structural responses and to re-center automatically. The damaged energy-dissipating plates can be easily replaced promptly after an external excitation, reducing repair time and costs. An OpenSEES model of a smart hybrid rotary was established and calibrated to reproduce the realistic behavior measured from a full-scale experimental test. Furthermore, the seismic performance of a 3-story moment resisting model building with smart hybrid rotary dampers designed for downtown Los Angeles was also evaluated in the OpenSEES structural analysis software. Such a smart moment resisting frame exhibits perfect residual roof displacement, 0.006", extremely smaller than 18.04" for the conventional moment resisting frame subjected to a 2500 year return period ground motion for the downtown LA area (an amplified factor of 1.15 on Kobe earthquake). The smart hybrid rotary dampers are also applied into an eccentric braced steel frame, which combines a moment frame system and a bracing system. The results illustrate that adding smart hybrid rotaries in this braced system not only completely restores the building after an external excitation, but also significantly reduces peak interstory drifts.

  7. 粒子群优化与差分进化混合算法的综述与分类%A SURVEY AND TAXONOMY ON HYBRID ALGORITHMS BASED ON PARTICLE SWARM OPTIMIZATION AND DIFFERENTIAL EVOLUTION

    Institute of Scientific and Technical Information of China (English)

    辛斌; 陈杰

    2011-01-01

    Improving the performance of optimization algorithms has long been an important pursuit of researchers. It is a typical design idea and paradigm to combine different optimizers for a synergy of their complementary advantages. Regarding two kinds of population-based evolutionary algorithms, the particle swarm optimizer (PSO) and the differential evolution (DE), we present a systematic and comprehensive survey on their hybrids (DEPSOs) in the literature and propose a taxonomy of hybridization strategies. Based on the taxonomy, we make a classification of different DEPSOs and analyze their similarities and differences. We also point out some new directions for future research and provide several guidelines for hybridization design of optimizers.%优化算法的性能改进长期以来一直是算法研究者们追求的一个重要目标,对不同算法进行混合以期利用算法的互补优势来获得性能更优异的算法代表了一类典型的设计思想.针对两类基于群体演化的优化算法——粒子群优化(PSO)与差分进化(DE)算法,对基于二者的各种混合算法(DEPSO)进行了系统而全面的综述,并在此基础上提出了一种混合策略分类方法,对现有的各种典型DEPSO算法进行了分类,比较了各种混合策略的异同,并指出了一些新的研究方向和混合设计原则.

  8. Exploring Automatization Processes.

    Science.gov (United States)

    DeKeyser, Robert M.

    1996-01-01

    Presents the rationale for and the results of a pilot study attempting to document in detail how automatization takes place as the result of different kinds of intensive practice. Results show that reaction times and error rates gradually decline with practice, and the practice effect is skill-specific. (36 references) (CK)

  9. Automatic Complexity Analysis

    DEFF Research Database (Denmark)

    Rosendahl, Mads

    1989-01-01

    One way to analyse programs is to to derive expressions for their computational behaviour. A time bound function (or worst-case complexity) gives an upper bound for the computation time as a function of the size of input. We describe a system to derive such time bounds automatically using abstrac...

  10. Brut: Automatic bubble classifier

    Science.gov (United States)

    Beaumont, Christopher; Goodman, Alyssa; Williams, Jonathan; Kendrew, Sarah; Simpson, Robert

    2014-07-01

    Brut, written in Python, identifies bubbles in infrared images of the Galactic midplane; it uses a database of known bubbles from the Milky Way Project and Spitzer images to build an automatic bubble classifier. The classifier is based on the Random Forest algorithm, and uses the WiseRF implementation of this algorithm.

  11. Automatic Dance Lesson Generation

    Science.gov (United States)

    Yang, Yang; Leung, H.; Yue, Lihua; Deng, LiQun

    2012-01-01

    In this paper, an automatic lesson generation system is presented which is suitable in a learning-by-mimicking scenario where the learning objects can be represented as multiattribute time series data. The dance is used as an example in this paper to illustrate the idea. Given a dance motion sequence as the input, the proposed lesson generation…

  12. Identification of a Differentially Expressed Gene PPP1CB between Porcine Longissimus dorsi of Meishan and Large White×Meishan Hybrids

    Institute of Scientific and Technical Information of China (English)

    Tao HUANG; Yuan-Zhu XIONG; Ming-Gang LEI; De-Quan XU; Chang-Yan DENG

    2006-01-01

    To study the molecular basis of heterosis, suppression subtractive hybridization was used to investigate the differences in gene expression between porcine Longissimus dorsi of F1 hybrids Large White×Meishan and their female parents Meishan. From two specific subtractive cDNA libraries, the clones selected by reverse Northern high-density blot screening were chosen to clone full-length cDNA by rapid amplification of cDNA ends. An expression-upregulated gene for Meishan skeletal muscle, designated protein phosphatase 1, catalytic subunit, beta isoform (PPP1CB), was identified. Porcine PPP1CB contains an open reading frame encoding 327 amino acid residues with 13 and 1763 nucleotides in the 5′ and 3′ untranslated regions, respectively. A DNA fragment of 721 nucleotides was amplified and a mutation that creates/disrupts a restriction site for endonuclease RsaI was found. The derived amino acid sequence of PPP1CB has high homology with the PPP1CB of three species, Mus musculus (99%), human (99%) and mouse (100%). The tissue expression analysis indicated that the swine PPP1CB gene is generally expressed in most tissues. The possible role of PPP1CB and its relation to porcine heterosis are discussed.

  13. A Genome Wide Comparison to Identify Markers to Differentiate the Sex of Larval Stages of Schistosoma haematobium, Schistosoma bovis and their Respective Hybrids.

    Directory of Open Access Journals (Sweden)

    Julien Kincaid-Smith

    2016-11-01

    Full Text Available For scientists working on gonochoric organisms, determining sex can be crucial for many biological questions and experimental studies, such as crossbreeding, but it can also be a challenging task, particularly when no sexual dimorphism is visible or cannot be directly observed. In metazoan parasites of the genus Schistosoma responsible for schistosomiasis, sex is genetically determined in the zygote with a female heterogametic ZW/ZZ system. Adult flukes have a pronounced sexual dimorphism, whereas the sexes of the larval stages are morphologically indistinguishable but can be distinguished uniquely by using molecular methods. Therefore, reliable methods are needed to identify the sex of larvae individuals. Here, we present an endpoint PCR-based assay using female-specific sequences identified using a genome-wide comparative analysis between males and females. This work allowed us to identify sex-markers for Schistosoma haematobium and Schistosoma bovis but also the hybrid between both species that has recently emerged in Corsica (France. Five molecular sex-markers were identified and are female-specific in S. haematobium and the hybrid parasite, whereas three of them are also female-specific in S. bovis. These molecular markers will be useful to conduct studies, such as experimental crosses on these disease-causing blood flukes, which are still largely neglected but no longer restricted to tropical areas.

  14. Hybrid vehicles

    Energy Technology Data Exchange (ETDEWEB)

    West, J.G.W. [Electrical Machines (United Kingdom)

    1997-07-01

    The reasons for adopting hybrid vehicles result mainly from the lack of adequate range from electric vehicles at an acceptable cost. Hybrids can offer significant improvements in emissions and fuel economy. Series and parallel hybrids are compared. A combination of series and parallel operation would be the ideal. This can be obtained using a planetary gearbox as a power split device allowing a small generator to transfer power to the propulsion motor giving the effect of a CVT. It allows the engine to run at semi-constant speed giving better fuel economy and reduced emissions. Hybrid car developments are described that show the wide range of possible hybrid systems. (author)

  15. Automaticity and Reading: Perspectives from the Instance Theory of Automatization.

    Science.gov (United States)

    Logan, Gordon D.

    1997-01-01

    Reviews recent literature on automaticity, defining the criteria that distinguish automatic processing from non-automatic processing, and describing modern theories of the underlying mechanisms. Focuses on evidence from studies of reading and draws implications from theory and data for practical issues in teaching reading. Suggests that…

  16. A novel hybrid optimization algorithm for diferential-algebraic control problems

    Directory of Open Access Journals (Sweden)

    F. S. Lobato

    2007-09-01

    Full Text Available Dynamic optimization problems can be numerically solved by direct, indirect and Hamilton-Jacobi-Bellman methods. In this paper, the differential-algebraic approach is incorporated into a hybrid method, extending the concepts of structural and differential indexes, consistent initialization analysis, index reduction and dynamic degrees of freedom to the optimal control problem. The resultant differential-algebraic optimal control problem is solved in the following steps: transformation of the original problem into a standard nonlinear programming problem that provides control and state variables, switching time estimates and costate variables profiles with the DIRCOL code; definition of the switching function and the automatically generated sequence of index-1 differential-algebraic boundary value problems from Pontryagin’s minimum principle by using the developed Otima code; and finally, application of the COLDAE code with the results of the direct method as an initial guess. The proposed hybrid method is illustrated with a pressure-constrained batch reactor optimization problem associated with the slack variable method.

  17. Automatic Ultrasound Scanning

    DEFF Research Database (Denmark)

    Moshavegh, Ramin

    Medical ultrasound has been a widely used imaging modality in healthcare platforms for examination, diagnostic purposes, and for real-time guidance during surgery. However, despite the recent advances, medical ultrasound remains the most operator-dependent imaging modality, as it heavily relies...... on the user adjustments on the scanner interface to optimize the scan settings. This explains the huge interest in the subject of this PhD project entitled “AUTOMATIC ULTRASOUND SCANNING”. The key goals of the project have been to develop automated techniques to minimize the unnecessary settings...... on the scanners, and to improve the computer-aided diagnosis (CAD) in ultrasound by introducing new quantitative measures. Thus, four major issues concerning automation of the medical ultrasound are addressed in this PhD project. They touch upon gain adjustments in ultrasound, automatic synthetic aperture image...

  18. Automatic trend estimation

    CERN Document Server

    Vamos¸, C˘alin

    2013-01-01

    Our book introduces a method to evaluate the accuracy of trend estimation algorithms under conditions similar to those encountered in real time series processing. This method is based on Monte Carlo experiments with artificial time series numerically generated by an original algorithm. The second part of the book contains several automatic algorithms for trend estimation and time series partitioning. The source codes of the computer programs implementing these original automatic algorithms are given in the appendix and will be freely available on the web. The book contains clear statement of the conditions and the approximations under which the algorithms work, as well as the proper interpretation of their results. We illustrate the functioning of the analyzed algorithms by processing time series from astrophysics, finance, biophysics, and paleoclimatology. The numerical experiment method extensively used in our book is already in common use in computational and statistical physics.

  19. Automatic food decisions

    DEFF Research Database (Denmark)

    Mueller Loose, Simone

    Consumers' food decisions are to a large extent shaped by automatic processes, which are either internally directed through learned habits and routines or externally influenced by context factors and visual information triggers. Innovative research methods such as eye tracking, choice experiments...... and food diaries allow us to better understand the impact of unconscious processes on consumers' food choices. Simone Mueller Loose will provide an overview of recent research insights into the effects of habit and context on consumers' food choices....

  20. Automatic food decisions

    DEFF Research Database (Denmark)

    Mueller Loose, Simone

    Consumers' food decisions are to a large extent shaped by automatic processes, which are either internally directed through learned habits and routines or externally influenced by context factors and visual information triggers. Innovative research methods such as eye tracking, choice experiments...... and food diaries allow us to better understand the impact of unconscious processes on consumers' food choices. Simone Mueller Loose will provide an overview of recent research insights into the effects of habit and context on consumers' food choices....

  1. Automatization of lexicographic work

    Directory of Open Access Journals (Sweden)

    Iztok Kosem

    2013-12-01

    Full Text Available A new approach to lexicographic work, in which the lexicographer is seen more as a validator of the choices made by computer, was recently envisaged by Rundell and Kilgarriff (2011. In this paper, we describe an experiment using such an approach during the creation of Slovene Lexical Database (Gantar, Krek, 2011. The corpus data, i.e. grammatical relations, collocations, examples, and grammatical labels, were automatically extracted from 1,18-billion-word Gigafida corpus of Slovene. The evaluation of the extracted data consisted of making a comparison between the time spent writing a manual entry and a (semi-automatic entry, and identifying potential improvements in the extraction algorithm and in the presentation of data. An important finding was that the automatic approach was far more effective than the manual approach, without any significant loss of information. Based on our experience, we would propose a slightly revised version of the approach envisaged by Rundell and Kilgarriff in which the validation of data is left to lower-level linguists or crowd-sourcing, whereas high-level tasks such as meaning description remain the domain of lexicographers. Such an approach indeed reduces the scope of lexicographer’s work, however it also results in the ability of bringing the content to the users more quickly.

  2. Differentiation transforming system

    Institute of Scientific and Technical Information of China (English)

    Qiang Cheng; Haibin Zhang; Bin Wang; Yonghua Zhao

    2009-01-01

    The differentiation transforming(DFT)system is developed to produce the tangent linear codes,which is used to calculate the Jacobian-and the Hessian-vector products with no truncation errors.This paper first gives the introduction of the functionality and features of the DFT system,and then discusses several techniques for the implementation of automatic differentiation tools,including data dependence analysis,singular differentiation and code optimization.Finally,the codes generated with DFT used in several applications have been demonstrated.

  3. [Construction of suppression subtractive hybridization (SSH) library of copepod Pseudodiaptomous annandalei and its ferritin cDNA cloning and differential expression under nickel stress].

    Science.gov (United States)

    Jiang, Jie-Lan; Wang, Gui-Zhong; Wu, Li-Sheng; Li, Shao-Jing

    2012-07-01

    To study the molecular response mechanisms of copepod to nickel stress, a suppression subtractive hybridization (SSH) cDNA library of Pseudodiaptomous annandalei under nickel stress was constructed by using SSH technique, and a total of 140 clones were randomly picked from the growing colonies and identified by PCR. The recombinant rate of the library was 98.6%, and the volume of the library was 1.12 x 10(6) cfu. After the recombinant plasmids were sequenced, a partial cDNA fragment of ferritin was recognized based on BLAST searches in NCBI, with a size of 859 bp and continuously encoding 170 amino acid residues. The semi-quantitative PCR results showed that the ferritin cDNA under 24 h nickel stress was distinctly up-regulated. The successful construction of the SSH library and the obtaining of ferritin cDNA fragment would supply basis for the further study of the molecular response mechanisms of copepod to nickel stress.

  4. Suppression subtractive hybridization coupled with microarray analysis to examine differential expression of genes in Japanese flounder Paralichthys olivaceus leucocytes during Edwardsiella tarda and viral hemorrhagic septicemia virus infection.

    Science.gov (United States)

    Matsuyama, Tomomasa; Fujiwara, Atushi; Takano, Tomokazu; Nakayasu, Chihaya

    2011-10-01

    Transcriptional changes in the peripheral blood leucocytes (PBL) of Japanese flounder Paralichthys olivaceus challenged by Edwardsiella tarda and viral hemorrhagic septicemia virus (VHSV) were investigated using suppression subtractive hybridization (SSH) coupled with cDNA microarray analysis. First, we constructed an SSH cDNA library using mRNA samples isolated from PBL of P. olivaceus that had been experimentally infected with E. tarda. We then examined the transcriptional changes occurring in the PBL due to E. tarda and VHSV infection using a cDNA microarray produced using clones produced from the SSH library. A total of 565 and 180 cDNA sequences corresponding to mRNA species that are either up- or down-regulated by E. tarda infection were isolated by SSH. While host gene expression responses in response to E. tarda and VHSV infection share several response elements, distinct patterns of gene expression were also observed. Specifically, E. tarda infection enhanced the expression of cell adhesion molecules while VHSV enhanced the expression of interferon and proteasome-related genes. In challenge trials of the two infectious agents, expression profiles of chemokines were also observed to differ. The results indicated that distinguishing between viral and bacterial infection is possible based on the RNA expression profiles of PBL from infected fish.

  5. Amniotic membrane immobilized poly(vinyl alcohol) hybrid polymer as an artificial cornea scaffold that supports a stratified and differentiated corneal epithelium.

    Science.gov (United States)

    Uchino, Yuichi; Shimmura, Shigeto; Miyashita, Hideyuki; Taguchi, Tetsushi; Kobayashi, Hisatoshi; Shimazaki, Jun; Tanaka, Junzo; Tsubota, Kazuo

    2007-04-01

    Poly(vinyl alcohol) (PVA) is a biocompatible, transparent hydrogel with physical strength that makes it promising as a material for an artificial cornea. In our previous study, type I collagen was immobilized onto PVA (PVA-COL) as a possible artificial cornea scaffold that can sustain a functional corneal epithelium. The cellular adhesiveness of PVA in vitro was improved by collagen immobilization; however, stable epithelialization was not achieved in vivo. To improve epithelialization in vivo, we created an amniotic membrane (AM)-immobilized polyvinyl alcohol hydrogel (PVA-AM) for use as an artificial cornea material. AM was attached to PVA-COL using a tissue adhesive consisting of collagen and citric acid derivative (CAD) as a crosslinker. Rabbit corneal epithelial cells were air-lift cultured with 3T3 feeder fibroblasts to form a stratified epithelial layer on PVA-AM. The rabbit corneal epithelial cells formed 3-5 layers of keratin-3-positive epithelium on PVA-AM. Occludin-positive cells were observed lining the superficial epithelium, the gap-junctional protein connexin43-positive cells was localized to the cell membrane of the basal epithelium, while both collagen IV were observed in the basement membrane. Epithelialization over implanted PVA-AM was complete within 2 weeks, with little inflammation or opacification of the hydrogel. Corneal epithelialization on PVA-AM in rabbit corneas improved over PVA-COL, suggesting the possibility of using PVA-AM as a biocompatible hybrid material for keratoprosthesis. (c) 2006 Wiley Periodicals, Inc.

  6. Evolved Finite State Controller For Hybrid System

    DEFF Research Database (Denmark)

    Dupuis, Jean-Francois; Fan, Zhun; Goodman, Erik

    2009-01-01

    This paper presents an evolutionary methodology to automatically generate nite state automata (FSA) controllers to control hybrid systems. FSA controllers for a case study of two-tank system have been successfully obtained using the proposed evolutionary approach. Experimental results show...

  7. LTE中基于频率资源重选的混合自动重发反馈传输技术%Transmission technique of hybrid automatic repeat request based on frequency resources re-election in long term evolution

    Institute of Scientific and Technical Information of China (English)

    刘高华; 苏寒松; 张伟

    2012-01-01

    针对3GPP长期演进(LTE)系统中使用的混合自动重发反馈(HARQ)技术在数据重传时占用资源块的问题,提出了一种基于频率资源分组的数据重传方法.根据使用的频带宽度,将频率资源分解成资源块组,在原固定资源基础上引入组号判定和资源块选择,以获得更高的分集增益.建立数据重传方法的HARQ模型,结合增量冗余(IR)和Chase合并技术进行验证,仿真结果表明在信道条件较差时,所提方法的误块率(BLER)性能约提升了1.2 dB,并且减少了平均重传次数.%Concerning the optimization of resource blocks during the Hybrid Automatic Repeat reQuest (HARQ) process in Long Term Evolution (LTE) system, a new method of data retransmission based on grouping of frequency resources reelection was proposed. The frequency resources were grouped according to the used bandwidth, and the introduction of group number judgement and frequency resource block selection could obtain higher diversity gain. With the constructed HARQ model incorporating Incremental Redundancy (IR) and Chase combining technique, the simulation results indicate that the improved method can enhance the Block Error Ratio (BLER) performance with 1. 2 dB in poor channel condition and reduce the average number of retransmission.

  8. Pseudovector mesons, hybrids and glueballs

    CERN Document Server

    Burakovsky, L; Burakovsky, Leonid; Page, Philip R.

    2000-01-01

    We consider glueball- (hybrid) meson mixing for the low-lying four pseudovector states. The h_1'(1380) decays dominantly to K*K with some presence in rho pi and omega eta. The newly observed h_1(1600) has a D- to S-wave width ratio to omega eta which does not enable differentiation between a conventional and hybrid meson interpretation. We predict the decay pattern of the isopartner conventional or hybrid meson b_1(1650). A notably narrow s sbar partner h_1'(1810) is predicted.

  9. Subtractive and differential hybridization molecular analyses of Ceratitis capitata XX/XY versus XX embryos to search for male-specific early transcribed genes.

    Science.gov (United States)

    Salvemini, Marco; D'Amato, Rocco; Petrella, Valeria; Ippolito, Domenica; Ventre, Giuseppe; Zhang, Ying; Saccone, Giuseppe

    2014-01-01

    The agricultural pest Ceratitis capitata, also known as the Mediterranean fruit fly or Medfly, is a fruit crop pest of very high economic relevance in different continents. The strategy to separate Ceratitis males from females (sexing) in mass rearing facilities is a useful step before the sterilization and release of male-only flies in Sterile Insect Technique control programs (SIT). The identification of genes having early embryonic male-specific expression, including Y-linked genes, such as the Maleness factor, could help to design novel and improved methods of sexing in combination with transgenesis, aiming to confer conditional female-specific lethality or female-to-male sexual reversal. We used a combination of Suppression Subtractive Hybrydization (SSH), Mirror Orientation Selection (MOS) anddifferential screening hybridization (DSH) techniques to approach the problem of isolating corresponding mRNAs expressed in XX/XY embryos versus XX-only embryos during a narrow developmental window (8-10 hours after egg laying, AEL ). Here we describe a novel strategy we have conceived to obtain relatively large amounts of XX-only embryos staged at 8-10 h AEL and so to extract few micrograms of polyA+ required to apply the complex technical procedure. The combination of these 3 techniques led to the identification of a Y-linked putative gene, CcGm2, sharing high sequence identity to a paralogous gene, CcGm1, localized either on an autosome or on the X chromosome. We propose that CcGm2 is a first interesting putative Y-linked gene which could play a role in sex determination. The function exterted by this gene should be investigated by novel genetic tools, such as CRISPR-CAS9, which will permit to target only the Y-linked paralogue, avoiding to interfere with the autosomal or X-linked paralogue function.

  10. Neuro-fuzzy system modeling based on automatic fuzzy clustering

    Institute of Scientific and Technical Information of China (English)

    Yuangang TANG; Fuchun SUN; Zengqi SUN

    2005-01-01

    A neuro-fuzzy system model based on automatic fuzzy clustering is proposed.A hybrid model identification algorithm is also developed to decide the model structure and model parameters.The algorithm mainly includes three parts:1) Automatic fuzzy C-means (AFCM),which is applied to generate fuzzy rules automatically,and then fix on the size of the neuro-fuzzy network,by which the complexity of system design is reducesd greatly at the price of the fitting capability;2) Recursive least square estimation (RLSE).It is used to update the parameters of Takagi-Sugeno model,which is employed to describe the behavior of the system;3) Gradient descent algorithm is also proposed for the fuzzy values according to the back propagation algorithm of neural network.Finally,modeling the dynamical equation of the two-link manipulator with the proposed approach is illustrated to validate the feasibility of the method.

  11. Automatic Segmentation of Dermoscopic Images by Iterative Classification

    Directory of Open Access Journals (Sweden)

    Maciel Zortea

    2011-01-01

    Full Text Available Accurate detection of the borders of skin lesions is a vital first step for computer aided diagnostic systems. This paper presents a novel automatic approach to segmentation of skin lesions that is particularly suitable for analysis of dermoscopic images. Assumptions about the image acquisition, in particular, the approximate location and color, are used to derive an automatic rule to select small seed regions, likely to correspond to samples of skin and the lesion of interest. The seed regions are used as initial training samples, and the lesion segmentation problem is treated as binary classification problem. An iterative hybrid classification strategy, based on a weighted combination of estimated posteriors of a linear and quadratic classifier, is used to update both the automatically selected training samples and the segmentation, increasing reliability and final accuracy, especially for those challenging images, where the contrast between the background skin and lesion is low.

  12. Suppression subtractive hybridization for identifying differentially expressed genes in renal cell carcinoma%肾癌差异表达基因的克隆及意义

    Institute of Scientific and Technical Information of China (English)

    张强; 辛殿旗; 那彦群; 郭应禄; 张志文

    2001-01-01

    目的克隆并鉴定肾癌与正常肾之间差异表达的基因,为研究肾癌发生发展的分子生物学机制奠定基础。 方法应用抑制性消减杂交技术(suppression subtractive hybridization, SSH),构建人肾癌组织与正常肾组织差异表达的cDNA消减文库,并从中克隆鉴定出肾癌差异表达的基因。 结果构建成功高消减效率的人肾癌组织cDNA消减文库,对其中10个克隆插入的cDNA片段进行测序后经GenBank检索表明10个片段均为未知新序列,其中RCC18为5个拷贝,这提示以上10个cDNA片段可能来自6个新基因。Northern blotting分析显示RCC18在肾癌组织中有明显表达,而在正常肾组织中无表达,这证明RCC18是肾癌特异表达的新基因。应用SMART RACE技术获得RCC18基因的全长。 结论人肾癌cDNA消减文库的建立为进一步大批量筛选、克隆肾癌特异性表达的未知新基因奠定了基础。初步筛选出的新基因为研究肾癌发生发展中的分子生物学机制提供了重要线索。%Objective To construct a renal cell carcinoma (RCC) cDNA subtractive library using suppression subtractive hybridization. Methods Polyadenylated RNA [Poly (A)+ RNA] was isolated from tissues of RCC and normal kidney, and single-strand cDNAs and double-strand cDNAs were synthesized in turn. RCC cDNAs were divided into two groups and ligated to the specific adaptors l and 2, and then hybridized with normal kidney cDNA twice with two rounds of suppression PCR. Second round PCR products were cloned to T/A plasmid vectors to set up the subtractive library. One hundred clones were randomly picked to perform enzyme digest analysis, and some underwent sequence analysis and Northern blot to identify RCC specifically expressed genes. SMART RACE procedure was operated to clone full length novel RCC specifically expressed genes. Results A human RCC subtractive library with high subtractive efficiency was successfully set

  13. Automaticity or active control

    DEFF Research Database (Denmark)

    Tudoran, Ana Alina; Olsen, Svein Ottar

    This study addresses the quasi-moderating role of habit strength in explaining action loyalty. A model of loyalty behaviour is proposed that extends the traditional satisfaction–intention–action loyalty network. Habit strength is conceptualised as a cognitive construct to refer to the psychological...... aspects of the construct, such as routine, inertia, automaticity, or very little conscious deliberation. The data consist of 2962 consumers participating in a large European survey. The results show that habit strength significantly moderates the association between satisfaction and action loyalty, and...

  14. Automatic Configuration in NTP

    Institute of Scientific and Technical Information of China (English)

    Jiang Zongli(蒋宗礼); Xu Binbin

    2003-01-01

    NTP is nowadays the most widely used distributed network time protocol, which aims at synchronizing the clocks of computers in a network and keeping the accuracy and validation of the time information which is transmitted in the network. Without automatic configuration mechanism, the stability and flexibility of the synchronization network built upon NTP protocol are not satisfying. P2P's resource discovery mechanism is used to look for time sources in a synchronization network, and according to the network environment and node's quality, the synchronization network is constructed dynamically.

  15. Automatic Complexity Analysis

    DEFF Research Database (Denmark)

    Rosendahl, Mads

    1989-01-01

    One way to analyse programs is to to derive expressions for their computational behaviour. A time bound function (or worst-case complexity) gives an upper bound for the computation time as a function of the size of input. We describe a system to derive such time bounds automatically using abstrac...... interpretation. The semantics-based setting makes it possible to prove the correctness of the time bound function. The system can analyse programs in a first-order subset of Lisp and we show how the system also can be used to analyse programs in other languages....

  16. A Primal-Dual Interior Point Method-Based Algorithm Adopting Automatic Differentiation for Optimal Power Flow of AC/DC Power Grid Containing VSC-HVDC System%基于自动微分技术的VSC-HVDC内点法最优潮流

    Institute of Scientific and Technical Information of China (English)

    季聪; 卫志农; 汤涌; 孙国强; 韦延方; 孙永辉

    2012-01-01

    Based on steady state power flow model of voltage source converter-high voltage direct current (VSC-HVDC) power transmission system and combining with automatic differentiation (AD) technology, a primal-dual interior point method-based algorithm for optimal power flow (OPF) of AC/DC power grid was proposed. Using high efficient AD tool based on operator overloading the Jacobian and Hessian matrices were generated, thus the work load for derivation of differential expressions and code compiling could be reduced and the development efficiency of program could be improved. Simulation results of calculation examples showed that in the solution of OPF problem of AC/DC power grid containing VSC-HVDC power transmission system the high efficiency of traditional primal-dual interior point method could be kept and it possessed satisfied adaptability to the combination of different VSC control modes.%根据电压源换流器-高压直流输电(voltage source converter-high voltage direct current,VSC-HVDC)的稳态潮流模型,结合自动微分(automatic differentiation,AD)技术,提出一种基于原对偶内点法的交直流系统最优潮流算法.该算法利用高效的基于操作符重载的AD工具生成雅可比(Jacobian)矩阵和海森(Hessian)矩阵,减少了微分表达式推导和代码编写的工作量,提高了程序的开发效率.多个算例的仿真结果表明,该算法保持了传统原对偶内点法在解决含VSC-HVDC的交直流最优潮流问题上的高效性,且对VSC的不同控制方式组合均具有良好的适应性.

  17. Do Automatic Self-Associations Relate to Suicidal Ideation?

    NARCIS (Netherlands)

    Glashouwer, Klaske A.; de Jong, Peter J.; Penninx, Brenda W. J. H.; Kerkhof, Ad J. F. M.; van Dyck, Richard; Ormel, Johan

    2010-01-01

    Dysfunctional self-schemas are assumed to play an important role in suicidal ideation. According to recent information-processing models, it is important to differentiate between 'explicit' beliefs and automatic associations. Explicit beliefs stem from the weighting of propositions and their corresp

  18. Conditioned craving cues elicit an automatic approach tendency

    NARCIS (Netherlands)

    D. van Gucht; D. Vansteenwegen; O. Van den Bergh; T. Beckers

    2008-01-01

    In two experiments, we used a Pavlovian differential conditioning procedure to induce craving for chocolate. As a result of repeated pairing with chocolate intake, initially neutral cues came to elicit an automatic approach tendency in a speeded stimulus-response compatibility reaction time task. Th

  19. Conditioned craving cues elicit an automatic approach tendency

    NARCIS (Netherlands)

    van Gucht, D.; Vansteenwegen, D.; Van den Bergh, O.; Beckers, T.

    2008-01-01

    In two experiments, we used a Pavlovian differential conditioning procedure to induce craving for chocolate. As a result of repeated pairing with chocolate intake, initially neutral cues came to elicit an automatic approach tendency in a speeded stimulus-response compatibility reaction time task.

  20. Automaticity or active control

    DEFF Research Database (Denmark)

    Tudoran, Ana Alina; Olsen, Svein Ottar

    This study addresses the quasi-moderating role of habit strength in explaining action loyalty. A model of loyalty behaviour is proposed that extends the traditional satisfaction–intention–action loyalty network. Habit strength is conceptualised as a cognitive construct to refer to the psychologic......, respectively, between intended loyalty and action loyalty. At high levels of habit strength, consumers are more likely to free up cognitive resources and incline the balance from controlled to routine and automatic-like responses.......This study addresses the quasi-moderating role of habit strength in explaining action loyalty. A model of loyalty behaviour is proposed that extends the traditional satisfaction–intention–action loyalty network. Habit strength is conceptualised as a cognitive construct to refer to the psychological...... aspects of the construct, such as routine, inertia, automaticity, or very little conscious deliberation. The data consist of 2962 consumers participating in a large European survey. The results show that habit strength significantly moderates the association between satisfaction and action loyalty, and...

  1. Hybrid holographic non-destructive test system

    Science.gov (United States)

    Kurtz, R. L. (Inventor)

    1978-01-01

    An automatic hybrid holographic non-destructive testing (HNDT) method and system capable of detecting flaws or debonds contained within certain materials are described. This system incorporates the techniques of optical holography, acoustical/optical holography and holographic correlation in determining the structural integrity of a test object. An automatic processing system including a detector and automatic data processor is used in conjunction with the three holographic techniques for correlating and interpreting the information supplied by the non-destructive systems. The automatic system also includes a sensor which directly translates an optical data format produced by the holographic techniques into electrical signals and then transmits this information to a digital computer for indicating the structural properties of the test object. The computer interprets the data gathered and determines whether further testing is necessary as well as the format of this new testing procedure.

  2. Comparison of automatic control systems

    Science.gov (United States)

    Oppelt, W

    1941-01-01

    This report deals with a reciprocal comparison of an automatic pressure control, an automatic rpm control, an automatic temperature control, and an automatic directional control. It shows the difference between the "faultproof" regulator and the actual regulator which is subject to faults, and develops this difference as far as possible in a parallel manner with regard to the control systems under consideration. Such as analysis affords, particularly in its extension to the faults of the actual regulator, a deep insight into the mechanism of the regulator process.

  3. 76 FR 66220 - Automatic Underfrequency Load Shedding and Load Shedding Plans Reliability Standards

    Science.gov (United States)

    2011-10-26

    ... differentiation in requirements based on entity size, though it provides the opportunity for planning coordinators... type of load shedding (i.e., automatic and manual) should not overlap. 49. There are no requirements in...

  4. Hybrid Metaheuristics

    CERN Document Server

    2013-01-01

    The main goal of this book is to provide a state of the art of hybrid metaheuristics. The book provides a complete background that enables readers to design and implement hybrid metaheuristics to solve complex optimization problems (continuous/discrete, mono-objective/multi-objective, optimization under uncertainty) in a diverse range of application domains. Readers learn to solve large scale problems quickly and efficiently combining metaheuristics with complementary metaheuristics, mathematical programming, constraint programming and machine learning. Numerous real-world examples of problems and solutions demonstrate how hybrid metaheuristics are applied in such fields as networks, logistics and transportation, bio-medical, engineering design, scheduling.

  5. Automatic Facial Expression Analysis A Survey

    Directory of Open Access Journals (Sweden)

    C.P. Sumathi

    2013-01-01

    Full Text Available The Automatic Facial Expression Recognition has been one of the latest research topic since1990’s.There have been recent advances in detecting face, facial expression recognition andclassification. There are multiple methods devised for facial feature extraction which helps in identifyingface and facial expressions. This paper surveys some of the published work since 2003 till date. Variousmethods are analysed to identify the Facial expression. The Paper also discusses about the facialparameterization using Facial Action Coding System(FACS action units and the methods whichrecognizes the action units parameters using facial expression data that are extracted. Various kinds offacial expressions are present in human face which can be identified based on their geometric features,appearance features and hybrid features . The two basic concepts of extracting features are based onfacial deformation and facial motion. This article also identifies the techniques based on thecharacteristics of expressions and classifies the suitable methods that can be implemented.

  6. Differential evolution hybrid algorithm for vehicle routing problem with time windows%带时间窗车辆路径问题的差分进化混合算法

    Institute of Scientific and Technical Information of China (English)

    王君

    2013-01-01

    研究了带时间窗的车辆路径问题(Vehicle Routing Problem with Time Windows,VRPTW),建立了数学模型,并设计了求解VRPTW的离散差分进化混合算法.算法采用随机车辆配载方法构造初始解,并通过构造新的变异和交叉算子进行改进.进一步,利用插入可行邻域和2-Opt可行邻域两种搜索可行解的邻域结构,引入禁忌搜索进一步进行局部搜索以提高算法的寻优能力.实验结果表明该算法是求解VRPTW的一种有效方法.%The Vehicle Routing Problem with Time Windows(VRPTW) is addressed in this paper.A mathematical model is built and a discrete differential evolution hybrid algorithm for VRPTW is designed.In the algorithm, the population is initialized by a random vehicle loading method,and improved by new discrete mutation and crossover operators.Moreover,the tabu search is introduced to enhance the local searching capability of the algorithm, in which insertion and 2-Opt feasible neighborhoods are used to search feasible solutions.Experimental results show the effectiveness of the proposed approach for the VRPTW.

  7. A Mathematical Model for Suppression Subtractive Hybridization

    OpenAIRE

    2002-01-01

    Suppression subtractive hybridization (SSH) is frequently used to unearth differentially expressed genes on a whole-genome scale. Its versatility is based on combining cDNA library subtraction and normalization, which allows the isolation of sequences of varying degrees of abundance and differential expression. SSH is a complex process with many adjustable parameters that affect the outcome of gene isolation.We present a mathematical model of SSH based on DNA hybridization kinetics for assess...

  8. Automatic Fixture Planning

    Institute of Scientific and Technical Information of China (English)

    1999-01-01

    Fixture planning is a crucial problem in the field of fixture design. In this paper, the research scope and research methods of the computer-aided fixture planning are presented. Based on positioning principles of typical workparts, an ANN algorithm, namely Hopfield algorithm, is adopted for the automatic fixture planning. Also, this paper leads a deep research into the selection of positioning and clamping surfaces (or points) on workparts using positioning-clamping-surface-selecting rules and matrix evaluation of deterministic workpart positioning. In the end of this paper, the methods to select positioning and clamping elements from database and the layout algorithm to assemble the selected fixture elements into a tangible fixture are developed.

  9. Microarray-Based Differential Expression Monitoring of 79 Novel Genes in Human Fetal Tissues

    Institute of Scientific and Technical Information of China (English)

    Ma; Shu-hua; Wang; Dun-cheng; 等

    2003-01-01

    79 ESTs fragments with represents corresponding novel genes were obtained by sequencing and bioinformatics analysis of human fetal kidney cDNA library. Microarray was prepared by using these novel EST fragments by automatic spotting. Expression patters of 79 ESTs of novel genes from human fetal kidney were analyzed in fetal brain and fetal heart tissues of 20-week-and 26-week-age fetus by performing of cDNA chip hybridization. This provides clues for studying exact functions of the novel genes. 8 genes were obtained which were expressed differentially in the fetal brain and heart of 20-week-and 26-week-age respectively. Then differentially expressed genes were identified by Northern analysis. The more exact function of the novel genes is under study.

  10. Hybrid intermediaries

    OpenAIRE

    Cetorelli, Nicola

    2014-01-01

    I introduce the concept of hybrid intermediaries: financial conglomerates that control a multiplicity of entity types active in the "assembly line" process of modern financial intermediation, a system that has become known as shadow banking. The complex bank holding companies of today are the best example of hybrid intermediaries, but I argue that financial firms from the "nonbank" space can just as easily evolve into conglomerates with similar organizational structure, thus acquiring the cap...

  11. Hybrid composites

    CSIR Research Space (South Africa)

    Jacob John, Maya

    2009-04-01

    Full Text Available effect was observed for the elongation at break of the hybrid composites. The impact strength of the hybrid composites increased with the addition of glass fibres. The tensile and impact properties of thermoplastic natural rubber reinforced short... panels made from conventional structural materials. Figure 3 illustrates the performance of cellular biocomposite panels against conventional systems used for building and residential construction, namely a pre- cast pre-stressed hollow core concrete...

  12. A Hybrid Method for Automatic Anatomical Variant Detection and Segmentation

    NARCIS (Netherlands)

    Lorenz, C.; Hanna, R.; Barschdorf, H.; Klinder, T.; Weber, IF.; Krueger, M.; Doessel, O.

    2012-01-01

    The delineation of anatomical structures in medical images can be achieved in an efficient and robust manner using statistical anatomical organ models, which has been demonstrated for an already considerable set of organs, including the heart. While it is possible to provide models with sufficient s

  13. STRICT STABILITY OF IMPULSIVE SET VALUED DIFFERENTIAL EQUATIONS

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    In this paper, we develop strict stability concepts of ODE to impulsive hybrid set valued differential equations. By Lyapunov’s original method, we get some basic strict stability criteria of impulsive hybrid set valued equations.

  14. Differential Equations as Actions

    DEFF Research Database (Denmark)

    Ronkko, Mauno; Ravn, Anders P.

    1997-01-01

    We extend a conventional action system with a primitive action consisting of a differential equation and an evolution invariant. The semantics is given by a predicate transformer. The weakest liberal precondition is chosen, because it is not always desirable that steps corresponding to differential...... actions shall terminate. It is shown that the proposed differential action has a semantics which corresponds to a discrete approximation when the discrete step size goes to zero. The extension gives action systems the power to model real-time clocks and continuous evolutions within hybrid systems....

  15. 克隆 MCF-7细胞凋亡差异表达基因的一种方法%Improved PCR-based subtractive hybridization, a new strategy on cloning differential expression genes in apoptotic MCF-7 cells

    Institute of Scientific and Technical Information of China (English)

    晏伟; 朱峰; 赵忠良; 柴玉波; 岳文; 邵晨; 路凡; 李青; 王成济

    2001-01-01

    目的克隆人乳腺癌 MCF-7细胞凋亡相关基因,分析验证所用方法的特点。方法采用基于 PCR的消减杂交技术,在已建立的全反式维甲酸诱导人乳腺癌 MCF-7细胞的凋亡模型中,克隆 MCF-7细胞凋亡的相关基因。结果从 13个克隆中,共筛选出 5个表达的基因。其中 4个为已知基因, 1个为新基因。新基因命名为 apmcf-1, Genbank登录号为 AF141882。 4个已知基因中 3个与凋亡关系密切。结论这种改良的基于 PCR 的消减杂交技术,为克隆差异表达基因提供了一种新的方法和思路。%Aim To clone apoptosis-related genes from human MCF-7 breast cancer cells and to analyze the character of the method used in the process. Methods A poptotic cell model of MCF-7 cells was established with the apoptotic tumor cells induced by the all-trans-retinoic acid. The apoptotic gene was cloned from the model by improved PCR-based subtractive hybridization. Results 5 clones were identified to be related to apoptosis by reverse dot blot, 4 of them were known genes, and 3 were related to apoptosis. A novel gene, named apmcf-1, coded for 47 amino acid was identified. This gene was accepted by Genbank, the accession number was AF141882. Conclusion This improved PCR-based subtractive hybridization may be an efficient way in cloning differential expression gene.

  16. Suppression subtractive hybridization.

    Science.gov (United States)

    Ghorbel, Mohamed T; Murphy, David

    2011-01-01

    Comparing two RNA populations that differ from the effects of a single independent variable, such as a drug treatment or a specific genetic defect, can establish differences in the abundance of specific transcripts that vary in a population dependent manner. There are different methods for identifying differentially expressed genes. These methods include microarray, Serial Analysis of Gene Expression (SAGE), and quantitative Reverse-Transcriptase Polymerase Chain Reaction (qRT-PCR). Herein, the protocol describes an easy and cost-effective alternative that does not require prior knowledge of the transcriptomes under examination. It is specifically relevant when low levels of RNA starting material are available. This protocol describes the use of Switching Mechanism At RNA Termini Polymerase Chain Reaction (SMART-PCR) to amplify cDNA from small amounts of RNA. The amplified cDNA populations under comparison are then subjected to Suppression Subtractive Hybridization (SSH-PCR). SSH-PCR is a technique that couples subtractive hybridization with suppression PCR to selectively amplify fragments of differentially expressed genes. The resulting products are cDNA populations enriched for significantly overrepresented transcripts in either of the two input RNAs. These cDNA populations can then be cloned to generate subtracted cDNA library. Microarrays made with clones from the subtracted forward and reverse cDNA libraries are then screened for differentially expressed genes using targets generated from tester and driver total RNAs.

  17. Control approach for comfortable power shifting in hybrid transmissions - ML 450 hybrid

    Energy Technology Data Exchange (ETDEWEB)

    Saenger Zetina, Siegfried; Neiss, Konstantin [Daimler AG, Hybrid Development Center, Troy, MI (United States)

    2008-07-01

    The comfortable shifting control in a luxury class vehicle is extremely important, due to competitive automatic transmissions with torque converters; clutch automated manual transmissions and dual clutch transmissions. Hybrid transmissions play a key role in comfort and performance enhancement while at the same time being fuel efficient with the aid of electric machines and battery packs. Here, the alternative to conventional add-on hybrid power head transmissions: the power split hybrid transmission is studied. As a practical example, the Two Mode of the Hybrid Development Center is used within the ML450 Hybrid. For achieving a smooth shifting, there are model based algorithms needed. As objective measure to evaluate the shifting the VDV (Vibration Dose Value) is used. (orig.)

  18. Automatic Kurdish Dialects Identification

    Directory of Open Access Journals (Sweden)

    Hossein Hassani

    2016-02-01

    Full Text Available Automatic dialect identification is a necessary Lan guage Technology for processing multi- dialect languages in which the dialects are linguis tically far from each other. Particularly, this becomes crucial where the dialects are mutually uni ntelligible. Therefore, to perform computational activities on these languages, the sy stem needs to identify the dialect that is the subject of the process. Kurdish language encompasse s various dialects. It is written using several different scripts. The language lacks of a standard orthography. This situation makes the Kurdish dialectal identification more interesti ng and required, both form the research and from the application perspectives. In this research , we have applied a classification method, based on supervised machine learning, to identify t he dialects of the Kurdish texts. The research has focused on two widely spoken and most dominant Kurdish dialects, namely, Kurmanji and Sorani. The approach could be applied to the other Kurdish dialects as well. The method is also applicable to the languages which are similar to Ku rdish in their dialectal diversity and differences.

  19. Automatic aircraft recognition

    Science.gov (United States)

    Hmam, Hatem; Kim, Jijoong

    2002-08-01

    Automatic aircraft recognition is very complex because of clutter, shadows, clouds, self-occlusion and degraded imaging conditions. This paper presents an aircraft recognition system, which assumes from the start that the image is possibly degraded, and implements a number of strategies to overcome edge fragmentation and distortion. The current vision system employs a bottom up approach, where recognition begins by locating image primitives (e.g., lines and corners), which are then combined in an incremental fashion into larger sets of line groupings using knowledge about aircraft, as viewed from a generic viewpoint. Knowledge about aircraft is represented in the form of whole/part shape description and the connectedness property, and is embedded in production rules, which primarily aim at finding instances of the aircraft parts in the image and checking the connectedness property between the parts. Once a match is found, a confidence score is assigned and as evidence in support of an aircraft interpretation is accumulated, the score is increased proportionally. Finally a selection of the resulting image interpretations with the highest scores, is subjected to competition tests, and only non-ambiguous interpretations are allowed to survive. Experimental results demonstrating the effectiveness of the current recognition system are given.

  20. Genome origin, historical hybridization and genetic differentiation in Anthosachne australasica (Triticeae; Poaceae), inferred from chloroplast rbcL, trnH-psbA and nuclear Acc1 gene sequences.

    Science.gov (United States)

    Sha, Li-Na; Fan, Xing; Wang, Xiao-Li; Dong, Zhen-Zhen; Zeng, Jian; Zhang, Hai-Qin; Kang, Hou-Yang; Wang, Yi; Liao, Jin-Qiu; Zhou, Yong-Hong

    2017-01-01

    Anthosachne Steudel is a group of allopolyploid species that was derived from hexaploidization between the Asian StY genome Roegneria entity and the Australasia W genome Australopyrum species. Polyploidization and apomixis contribute to taxonomic complexity in Anthosachne Here, a study is presented on the phylogeny and evolutionary history of Anthosachne australasica The aims are to demonstrate the process of polyploidization events and to explore the differentiation patterns of the St genome following geographic isolation. Chloroplast rbcL and trnH-psbA and nuclear Acc1 gene sequences of 60 Anthosachne taxa and nine Roegneria species were analysed with those of 33 diploid taxa representing 20 basic genomes in Triticeae. The phylogenetic relationships were reconstructed. A time-calibrated phylogeny was generated to estimate the evolutionary history of A. australasica Nucleotide diversity patterns were used to assess the divergence within A. australasica and between Anthosachne and its putative progenitors. Three homoeologous copies of the Acc1 sequences from Anthosachne were grouped with the Acc1 sequences from Roegneria, Pseudoroegneria, Australopyrum, Dasypyrum and Peridictyon The chloroplast sequences of Anthosachne were clustered with those from Roegneria and Pseudoroegneria Divergence time for Anthosachne was dated to 4·66 million years ago (MYA). The level of nucleotide diversity in Australasian Anthosachne was higher than that in continental Roegneria A low level of genetic differentiation within the A. australasica complex was found. Anthosachne originated from historical hybridization between Australopyrum species and a Roegneria entity colonized from Asia to Australasia via South-east Asia during the late Miocene. The St lineage served as the maternal donor during the speciation of Anthosachne A contrasting pattern of population genetic structure exists in the A. australasica complex. Greater diversity in island Anthosachne compared with continental

  1. Electronic amplifiers for automatic compensators

    CERN Document Server

    Polonnikov, D Ye

    1965-01-01

    Electronic Amplifiers for Automatic Compensators presents the design and operation of electronic amplifiers for use in automatic control and measuring systems. This book is composed of eight chapters that consider the problems of constructing input and output circuits of amplifiers, suppression of interference and ensuring high sensitivity.This work begins with a survey of the operating principles of electronic amplifiers in automatic compensator systems. The succeeding chapters deal with circuit selection and the calculation and determination of the principal characteristics of amplifiers, as

  2. The Automatic Telescope Network (ATN)

    CERN Document Server

    Mattox, J R

    1999-01-01

    Because of the scheduled GLAST mission by NASA, there is strong scientific justification for preparation for very extensive blazar monitoring in the optical bands to exploit the opportunity to learn about blazars through the correlation of variability of the gamma-ray flux with flux at lower frequencies. Current optical facilities do not provide the required capability.Developments in technology have enabled astronomers to readily deploy automatic telescopes. The effort to create an Automatic Telescope Network (ATN) for blazar monitoring in the GLAST era is described. Other scientific applications of the networks of automatic telescopes are discussed. The potential of the ATN for science education is also discussed.

  3. Clinical pilot study for the automatic segmentation and recognition of abdominal adipose tissue compartments from MRI data

    Energy Technology Data Exchange (ETDEWEB)

    Noel, P.B.; Bauer, J.S.; Ganter, C.; Markus, C.; Rummeny, E.J.; Engels, H.P. [Klinikum rechts der Isar, Technische Univ. Muenchen (Germany). Inst. fuer Radiologie; Hauner, H. [Klinikum rechts der Isar, Technische Univ. Muenchen (Germany). Else Kroener-Fresenius-Center for Nutritional Medicine

    2012-06-15

    Purpose: In the diagnosis and risk assessment of obesity, both the amount and distribution of adipose tissue compartments are critical factors. We present a hybrid method for the quantitative measurement of human body fat compartments. Materials and Methods: MRI imaging was performed on a 1.5 T scanner. In a pre-processing step, the images were corrected for bias field inhomogeneity. For segmentation and recognition a hybrid algorithm was developed to automatically differentiate between different adipose tissue compartments. The presented algorithm is designed with a combination of shape and intensity-based techniques. To incorporate the presented algorithm into the clinical routine, we developed a graphical user interface. Results from our methods were compared with the known volume of an adipose tissue phantom. To evaluate our method, we analyzed 40 clinical MRI scans of the abdominal region. Results: Relatively low segmentation errors were found for subcutaneous adipose tissue (3.56 %) and visceral adipose tissue (0.29 %) in phantom studies. The clinical results indicated high correlations between the distribution of adipose tissue compartments and obesity. Conclusion: We present an approach that rapidly identifies and quantifies adipose tissue depots of interest. With this method examination and analysis can be performed in a clinically feasible timeframe. (orig.)

  4. ANALYSES ON DIFFERENTIALLY EXPRESSED GENES ASSOCIATED WITH HUMAN BREAST CANCER

    Institute of Scientific and Technical Information of China (English)

    MENG Xu-li; DING Xiao-wen; XU Xiao-hong

    2006-01-01

    Objective: To investigate the molecular etiology of breast cancer by way of studying the differential expression and initial function of the related genes in the occurrence and development of breast cancer. Methods: Two hundred and eighty-eight human tumor related genes were chosen for preparation of the oligochips probe. mRNA was extracted from 16 breast cancer tissues and the corresponding normal breast tissues, and cDNA probe was prepared through reverse-transcription and hybridized with the gene chip. A laser focused fluorescent scanner was used to scan the chip. The different gene expressions were thereafter automatically compared and analyzed between the two sample groups. Cy3/Cy5>3.5 meant significant up-regulation. Cy3/Cy5<0.25 meant significant down-regulation. Results: The comparison between the breast cancer tissues and their corresponding normal tissues showed that 84 genes had differential expression in the Chip. Among the differently expressed genes, there were 4 genes with significant down-regulation and 6 with significant up-regulation. Compared with normal breast tissues, differentially expressed genes did partially exist in the breast cancer tissues. Conclusion: Changes in multi-gene expression regulations take place during the occurrence and development of breast cancer; and the research on related genes can help understanding the mechanism of tumor occurrence.

  5. Well-posedness and stability analysis of hybrid feedback systems using Shkalikov's theory

    Directory of Open Access Journals (Sweden)

    Piotr Grabowski

    2006-01-01

    Full Text Available The modern method of analysis of the distributed parameter systems relies on the transformation of the dynamical model to an abstract differential equation on an appropriately chosen Banach or, if possible, Hilbert space. A linear dynamical model in the form of a first order abstract differential equation is considered to be well-posed if its right-hand side generates a strongly continuous semigroup. Similarly, a dynamical model in the form of a second order abstract differential equation is well-posed if its right-hand side generates a strongly continuous cosine family of operators. Unfortunately, the presence of a feedback leads to serious complications or even excludes a direct verification of assumptions of the Hille-Phillips-Yosida and/or the Sova-Fattorini Theorems. The class of operators which are similar to a normal discrete operator on a Hilbert space describes a wide variety of linear operators. In the papers [Grabowski P., Well–posedness and stability analysis of hybrid feedback systems, Journal of Mathematical Systems, Estimation and Control 6 (1996, 121–124 (summary, full electronic manuscript – retrieval code 15844, Grabowski P., Spectral approach to well–posedness and stability analysis of hybrid feedback systems, In: Wajs W., Grabowski P. (Eds., Studies in Automatics, 1996, Kraków, Wydawnictwa AGH, 104–139] two groups of similarity criteria for a given hybrid closed-lop system operator are given. The criteria of the first group are based on some perturbation results, and of the second, on the application of Shkalikov's theory of the Sturm-Liouville eigenproblems with a spectral parameter in the boundary conditions. In the present paper we continue those investigations showing certain advanced applications of the Shkalikov's theory. The results are illustrated by feedback control systems examples governed by wave and beam equations with increasing degree of complexity of the boundary conditions.

  6. TARDEC Hybrid Electric (HE) Technology Program

    Science.gov (United States)

    2011-02-05

    System Generator /Motor...ireDifferential Differential Energy Storage System Generator / Motor Inverter Engine Generator/Motor Transmission 3-Phase AC power into Motor Inverter When...Hybrid Electric Drive Propulsion TireTire Tire Energy Storage System Generator Controller 3Ø A/C to HV DC Generator Controller rectifies AC to DC

  7. Clothes Dryer Automatic Termination Evaluation

    Energy Technology Data Exchange (ETDEWEB)

    TeGrotenhuis, Ward E.

    2014-10-01

    Volume 2: Improved Sensor and Control Designs Many residential clothes dryers on the market today provide automatic cycles that are intended to stop when the clothes are dry, as determined by the final remaining moisture content (RMC). However, testing of automatic termination cycles has shown that many dryers are susceptible to over-drying of loads, leading to excess energy consumption. In particular, tests performed using the DOE Test Procedure in Appendix D2 of 10 CFR 430 subpart B have shown that as much as 62% of the energy used in a cycle may be from over-drying. Volume 1 of this report shows an average of 20% excess energy from over-drying when running automatic cycles with various load compositions and dryer settings. Consequently, improving automatic termination sensors and algorithms has the potential for substantial energy savings in the U.S.

  8. Prospects for de-automatization.

    Science.gov (United States)

    Kihlstrom, John F

    2011-06-01

    Research by Raz and his associates has repeatedly found that suggestions for hypnotic agnosia, administered to highly hypnotizable subjects, reduce or even eliminate Stroop interference. The present paper sought unsuccessfully to extend these findings to negative priming in the Stroop task. Nevertheless, the reduction of Stroop interference has broad theoretical implications, both for our understanding of automaticity and for the prospect of de-automatizing cognition in meditation and other altered states of consciousness.

  9. Process automatization in system administration

    OpenAIRE

    Petauer, Janja

    2013-01-01

    The aim of the thesis is to present automatization of user management in company Studio Moderna. The company has grown exponentially in recent years, that is why we needed to find faster, easier and cheaper way of man- aging user accounts. We automatized processes of creating, changing and removing user accounts within Active Directory. We prepared user interface inside of existing application, used Java Script for drop down menus, wrote script in scripting programming langu...

  10. Automatic Sarcasm Detection: A Survey

    OpenAIRE

    Joshi, Aditya; Bhattacharyya, Pushpak; Carman, Mark James

    2016-01-01

    Automatic sarcasm detection is the task of predicting sarcasm in text. This is a crucial step to sentiment analysis, considering prevalence and challenges of sarcasm in sentiment-bearing text. Beginning with an approach that used speech-based features, sarcasm detection has witnessed great interest from the sentiment analysis community. This paper is the first known compilation of past work in automatic sarcasm detection. We observe three milestones in the research so far: semi-supervised pat...

  11. Automatic Coarse Graining of Polymers

    OpenAIRE

    Faller, Roland

    2003-01-01

    Several recently proposed semi--automatic and fully--automatic coarse--graining schemes for polymer simulations are discussed. All these techniques derive effective potentials for multi--atom units or super--atoms from atomistic simulations. These include techniques relying on single chain simulations in vacuum and self--consistent optimizations from the melt like the simplex method and the inverted Boltzmann method. The focus is on matching the polymer structure on different scales. Several ...

  12. The automatization of journalistic narrative

    Directory of Open Access Journals (Sweden)

    Naara Normande

    2013-06-01

    Full Text Available This paper proposes an initial discussion about the production of automatized journalistic narratives. Despite being a topic discussed in specialized sites and international conferences in communication area, the concepts are still deficient in academic research. For this article, we studied the concepts of narrative, databases and algorithms, indicating a theoretical trend that explains this automatized journalistic narratives. As characterization, we use the cases of Los Angeles Times, Narrative Science and Automated Insights.

  13. Discrete, Continuous, and Hybrid Petri Nets

    CERN Document Server

    David, Rene

    2010-01-01

    Petri Nets were introduced and still successfully used to analyze and model discrete event systems especially in engineering and computer sciences such as in automatic control. Recently this discrete Petri Nets formalism was successfully extended to continuous and hybrid systems. This monograph presents a well written and clearly organized introduction in the standard methods of Petri Nets with the aim to reach an accurate understanding of continuous and hybrid Petri Nets, while preserving the consistency of basic concepts throughout the book. The book is a monograph as well as a didactic tool

  14. Event-triggered hybrid control based on multi-Agent systems for Microgrids

    DEFF Research Database (Denmark)

    Dou, Chun-xia; Liu, Bin; Guerrero, Josep M.

    2014-01-01

    of distributed energy resources, thus it is typical hybrid dynamic network. Considering the complex hybrid behaviors, a hierarchical decentralized coordinated control scheme is firstly constructed based on multi-agent sys-tem, then, the hybrid model of the microgrid is built by using differential hybrid Petri...

  15. Suppression Subtractive Hybridization Identified Genes Differentially Expressed in a Multidrug Resistance Cell Line of Human Lung Adenocarcinoma%肺腺癌多药耐药细胞特异表达基因的克隆与鉴定

    Institute of Scientific and Technical Information of China (English)

    陈杰; 钱桂生; 黄桂君; 熊玮; 李靖

    2001-01-01

    Objective: The aim of this study was to clone and screen multidrug resistance related gene of human adenocarcinoma cell. Methods: The suppression subtractive hybridization (SSH) was performed on human adenocarcinoma multidrug resistance cell line (SPC-A-1/CDDP, as tester) and human adenocarcinoma cell line (SPC-A-1, as driver). After the subtracted cDNA library being constructed, the dot blots was used to screen the subtracted cDNA library with forward and reverse-subtracted cDNA probes. The differentially expressed cDNA fragments in SPC-A-1/CDDP was sequenced and analyzed through Genbank with Blast search. The novel cDNA sequences were analyzed by Northern blots. Results: A high quality subtracted cDNA library was constructed. Twenty-three differentially expressed cDNA fragments in SPC-A-1/CDDP were identified. Two of them were novel cDNA sequences and the others had 93%-100% homology with the known genes respectively. Northern blots indicated the novel cDNA sequences only expressed in SPC-A-1/CDDP cell. Conclusion: The novel cDNA sequences might be multidrug resistance related genes in human lung adenocarcinoma. SSH is a powerful technique to identify differentially expressed genes.%目的:克隆和筛选肺腺癌多药耐药细胞特异表达基因。方法:将肺腺癌多药耐药细胞(SPC-A-1/CDDP)作为实验方,肺腺癌细胞(SPC-A-1)作为对照方,应用抑制消减杂交技术,构建实验方特异表达cDNA消减文库;用斑点杂交法初步筛选cDNA消减文库后,将获得的阳性克隆进行测序和同源性分析(Genbank),对新的cDNA序列进行Northern blot杂交验证。结果:建立了一个肺腺癌多药耐药细胞(SPC-A-1/CDDP)特异表达cDNA消减文库,斑点杂交法初步筛选显示23个克隆中有SPC-A-1/CDDP特异表达cDNA片断,测序和同源性分析表明2个cDNA片断为新序列,其余cDNA片断与已知基因有93%~100%的同源性,Northern blot杂交结果表明2

  16. Automatic or Deliberate? Cerebral correlates of automatic associations towards performance enhancing substances

    Directory of Open Access Journals (Sweden)

    Sebastian eSchindler

    2015-12-01

    Full Text Available The direct assessment of explicit attitudes towards performance enhancing substances, for example Neuroenhancement or doping in sports can be affected by social desirability biases and cheating attempts. According to Dual Process Theories of cognition, indirect measures like the Implicit Association Test (IAT measure automatic associations towards a topic (as opposed to explicit attitudes measured by self-report measures. Such automatic associations are thought to occur rapidly and to evade voluntary control. However, whether or not such indirect tests actually reflect automatic associations is difficult to validate. Electroencephalography´s superior time resolution enables to differentiate between highly automatic compared to more elaborate processing stages. We therefore examined on which processing stages cortical differences between negative or positive attitudes to doping occur, and whether or not these differences can be related to BIAT scores. We tested 42 university students (31 females, 24.43 ± 3.17 years old, who were requested to complete a brief doping IAT (BIAT on attitudes towards doping. Cerebral activity during doping BIAT completion was assessed using high-density EEG. Behaviorally, participants D-scores exhibited negative attitudes towards doping, represented by faster reaction times in the doping + dislike pairing task. Event-related potentials (ERPs revealed earliest effects between 200 and 300ms. Here, a relatively larger occipital positivity was found for the doping + dislike pairing task. Further, in the LPP time range between 400 and 600ms a larger late positive potential was found for the doping + dislike pairing task over central regions. These LPP amplitude differences were successfully predicting participants´ BIAT D-scores.Results indicate that event-related potentials differentiate between positive and negative doping attitudes at stages of mid-latency. However, it seems that IAT scores can be predicted only by

  17. Symbolic computations in applied differential geometry

    NARCIS (Netherlands)

    Gragert, P.K.H.; Kersten, P.H.M.; Martini, R.

    1983-01-01

    The main aim of this paper is to contribute to the automatic calculations in differential geometry and its applications, with emphasis on the prolongation theory of Estabrook and Wahlquist, and the calculation of invariance groups of exterior differential systems. A large number of worked examples h

  18. Automatically Annotated Mapping for Indoor Mobile Robot Applications

    DEFF Research Database (Denmark)

    Özkil, Ali Gürcan; Howard, Thomas J.

    2012-01-01

    localization and mapping in topology space, and fuses camera and robot pose estimations to build an automatically annotated global topo-metric map. It is developed as a framework for a hospital service robot and tested in a real hospital. Experiments show that the method is capable of producing globally...... consistent, automatically annotated hybrid metric-topological maps that is needed by mobile service robots.......This paper presents a new and practical method for mapping and annotating indoor environments for mobile robot use. The method makes use of 2D occupancy grid maps for metric representation, and topology maps to indicate the connectivity of the ‘places-of-interests’ in the environment. Novel use...

  19. Semi-automatic grading system in histologic and immunohistochemistry analysis to evaluate in vitro chondrogenesis

    OpenAIRE

    Gutiérrez, María Lucía; Deparatamento de Microbiología, Facultad de Ciencias. Pontificia Universidad Javeriana; Guevara, Johana; Instituto de Errores Innatos del Metabolismo. Facultad de Ciencias. Pontificia Universidad Javeriana. Bogotá, D.C., Colombia; Barrera, Luis Alejandro; Instituto de Errores Innatos del Metabolismo. Facultad de Ciencias. Pontificia Universidad Javeriana. Bogotá, D.C.,

    2012-01-01

    During embryological limb formation mesenchymal cells condense and differentiate into chondrocytes, in a process known as chondrogenesis. These chondrocytes synthesize glycosaminoglycans (GAGs), thus playing an important role in this process. A simplified system in vitro chondrogenesis, using adult mesenchymal stromal cells (MSCs) has been demonstrated. This differentiation potential is usually assessed by histological staining. Objective. Establishment of a semi-automatic grading system for ...

  20. Hybrid Parallel Computation of Integration in GRACE

    CERN Document Server

    Yuasa, F; Kawabata, S; Perret-Gallix, D; Itakura, K; Hotta, Y; Okuda, M; Yuasa, Fukuko; Ishikawa, Tadashi; Kawabata, Setsuya; Perret-Gallix, Denis; Itakura, Kazuhiro; Hotta, Yukihiko; Okuda, Motoi

    2000-01-01

    With an integrated software package {\\tt GRACE}, it is possible to generate Feynman diagrams, calculate the total cross section and generate physics events automatically. We outline the hybrid method of parallel computation of the multi-dimensional integration of {\\tt GRACE}. We used {\\tt MPI} (Message Passing Interface) as the parallel library and, to improve the performance we embedded the mechanism of the dynamic load balancing. The reduction rate of the practical execution time was studied.

  1. Bimode uninterruptible power supply compatibility in renewable hybrid energy systems

    Energy Technology Data Exchange (ETDEWEB)

    Bower, W. (Sandia National Labs., Albuquerque, NM (USA)); O' Sullivan, G. (Abacus Controls, Inc., Somerville, NJ (USA))

    1990-08-01

    Inverters installed in renewable hybrid energy systems are typically used in a stand-alone mode to supply ac power to loads from battery storage when the engine-generator is not being used. Similarities in topology and in the performance requirements of the standby uninterruptible power supply (UPS) system and the hybrid system suggest the UPS could be used in hybrid energy systems. Another alternative to inverters with add-on charging circuits or standby UPS hardware is the Bimode UPS. The bimode UPS uses common circuitry and power components for dc to ac inversion and battery charging. It also provides an automatic and nearly instantaneous ac power transfer function when the engine-generator is started or stopped. The measured operating and transfer characteristics of a bimode UPS in a utility system and in a hybrid system are presented. The applicability of the bimode UPS to hybrid systems and its compatibility in a PV/engine-generator hybrid system are given.

  2. Automatic charge control system for satellites

    Science.gov (United States)

    Shuman, B. M.; Cohen, H. A.

    1985-01-01

    The SCATHA and the ATS-5 and 6 spacecraft provided insights to the problem of spacecraft charging at geosychronous altitudes. Reduction of the levels of both absolute and differential charging was indicated, by the emission of low energy neutral plasma. It is appropriate to complete the transition from experimental results to the development of a system that will sense the state-of-charge of a spacecraft, and, when a predetermined threshold is reached, will respond automatically to reduce it. A development program was initiated utilizing sensors comparable to the proton electrostatic analyzer, the surface potential monitor, and the transient pulse monitor that flew in SCATHA, and combine these outputs through a microprocessor controller to operate a rapid-start, low energy plasma source.

  3. The Automatic and Controlled Processing of Temporal and Spatial Patterns.

    Science.gov (United States)

    1980-02-01

    Atkinson and Juola, 1973; Slhffrin and Geisler, 1973; and Corballis, 1975; Posner and Snyder, 1975). Schneider and Shiffrin (1977; Shiffrin and Schneider...Besides the frame size, Schneider and Shiffrin (1977) also varied the memory set size to study the differential load requirements of CM and VM...theoretical level, Shiffrin and Schneider (1977) described an automatic process as a sequence of memory nodes that nearly always become active in

  4. Automatically Discovering Relaxed Lyapunov Functions for Polynomial Dynamical Systems

    CERN Document Server

    Liu, Jiang; Zhao, Hengjun

    2011-01-01

    The notion of Lyapunov function plays a key role in design and verification of dynamical systems, as well as hybrid and cyber-physical systems. In this paper, to analyze the asymptotic stability of a dynamical system, we generalize standard Lyapunov functions to relaxed Lyapunov functions (RLFs), by considering higher order Lie derivatives of certain functions along the system's vector field. Furthermore, we present a complete method to automatically discovering polynomial RLFs for polynomial dynamical systems (PDSs). Our method is complete in the sense that it is able to discover all polynomial RLFs by enumerating all polynomial templates for any PDS.

  5. Hybrid microelectronic technology

    Science.gov (United States)

    Moran, P.

    Various areas of hybrid microelectronic technology are discussed. The topics addressed include: basic thick film processing, thick film pastes and substrates, add-on components and attachment methods, thin film processing, and design of thick film hybrid circuits. Also considered are: packaging hybrid circuits, automating the production of hybrid circuits, application of hybrid techniques, customer's view of hybrid technology, and quality control and assurance in hybrid circuit production.

  6. Travelling waves in hybrid chemotaxis models

    CERN Document Server

    Franz, Benjamin; Painter, Kevin J; Erban, Radek

    2013-01-01

    Hybrid models of chemotaxis combine agent-based models of cells with partial differential equation models of extracellular chemical signals. In this paper, travelling wave properties of hybrid models of bacterial chemotaxis are investigated. Bacteria are modelled using an agent-based (individual-based) approach with internal dynamics describing signal transduction. In addition to the chemotactic behaviour of the bacteria, the individual-based model also includes cell proliferation and death. Cells consume the extracellular nutrient field (chemoattractant) which is modelled using a partial differential equation. Mesoscopic and macroscopic equations representing the behaviour of the hybrid model are derived and the existence of travelling wave solutions for these models is established. It is shown that cell proliferation is necessary for the existence of non-transient (stationary) travelling waves in hybrid models. Additionally, a numerical comparison between the wave speeds of the continuum models and the hybr...

  7. Algorithms for skiascopy measurement automatization

    Science.gov (United States)

    Fomins, Sergejs; Trukša, Renārs; KrūmiĆa, Gunta

    2014-10-01

    Automatic dynamic infrared retinoscope was developed, which allows to run procedure at a much higher rate. Our system uses a USB image sensor with up to 180 Hz refresh rate equipped with a long focus objective and 850 nm infrared light emitting diode as light source. Two servo motors driven by microprocessor control the rotation of semitransparent mirror and motion of retinoscope chassis. Image of eye pupil reflex is captured via software and analyzed along the horizontal plane. Algorithm for automatic accommodative state analysis is developed based on the intensity changes of the fundus reflex.

  8. Annual review in automatic programming

    CERN Document Server

    Goodman, Richard

    2014-01-01

    Annual Review in Automatic Programming focuses on the techniques of automatic programming used with digital computers. Topics covered range from the design of machine-independent programming languages to the use of recursive procedures in ALGOL 60. A multi-pass translation scheme for ALGOL 60 is described, along with some commercial source languages. The structure and use of the syntax-directed compiler is also considered.Comprised of 12 chapters, this volume begins with a discussion on the basic ideas involved in the description of a computing process as a program for a computer, expressed in

  9. Automatic mapping of monitoring data

    DEFF Research Database (Denmark)

    Lophaven, Søren; Nielsen, Hans Bruun; Søndergaard, Jacob

    2005-01-01

    This paper presents an approach, based on universal kriging, for automatic mapping of monitoring data. The performance of the mapping approach is tested on two data-sets containing daily mean gamma dose rates in Germany reported by means of the national automatic monitoring network (IMIS......). In the second dataset an accidental release of radioactivity in the environment was simulated in the South-Western corner of the monitored area. The approach has a tendency to smooth the actual data values, and therefore it underestimates extreme values, as seen in the second dataset. However, it is capable...

  10. Automatic Construction of Finite Algebras

    Institute of Scientific and Technical Information of China (English)

    张健

    1995-01-01

    This paper deals with model generation for equational theories,i.e.,automatically generating (finite)models of a given set of (logical) equations.Our method of finite model generation and a tool for automatic construction of finite algebras is described.Some examples are given to show the applications of our program.We argue that,the combination of model generators and theorem provers enables us to get a better understanding of logical theories.A brief comparison betwween our tool and other similar tools is also presented.

  11. Hybrid Gear

    Science.gov (United States)

    Handschuh, Robert F. (Inventor); Roberts, Gary D. (Inventor)

    2016-01-01

    A hybrid gear consisting of metallic outer rim with gear teeth and metallic hub in combination with a composite lay up between the shaft interface (hub) and gear tooth rim is described. The composite lay-up lightens the gear member while having similar torque carrying capability and it attenuates the impact loading driven noise/vibration that is typical in gear systems. The gear has the same operational capability with respect to shaft speed, torque, and temperature as an all-metallic gear as used in aerospace gear design.

  12. Hybrid Qualifications

    DEFF Research Database (Denmark)

    has turned out as a major focus of European education and training policies and certainly is a crucial principle underlying the European Qualifications Framework (EQF). In this context, «hybrid qualifications» (HQ) may be seen as an interesting approach to tackle these challenges as they serve «two...... masters», i.e. by producing skills for the labour market and enabling individuals to progress more or less directly to higher education. The specific focus of this book is placed on conditions, structures and processes which help to combine VET with qualifications leading into higher education...

  13. Automatic Validation of Protocol Narration

    DEFF Research Database (Denmark)

    Bodei, Chiara; Buchholtz, Mikael; Degano, Pierpablo;

    2003-01-01

    We perform a systematic expansion of protocol narrations into terms of a process algebra in order to make precise some of the detailed checks that need to be made in a protocol. We then apply static analysis technology to develop an automatic validation procedure for protocols. Finally, we...

  14. How CBO Estimates Automatic Stabilizers

    Science.gov (United States)

    2015-11-01

    Medicare Payroll Taxes ........................................................................................ 10 Taxes on Production and Imports ...the economy. Most types of revenues—mainly personal, corporate, and social insurance taxes—are sensitive to the business cycle and account for most of...States: Automatic Stabilizers, Discretionary Fiscal Policy Actions, and the Economy, Finance and Economic Discussion Series Paper 2010-43 (Board of

  15. Automatic Identification of Metaphoric Utterances

    Science.gov (United States)

    Dunn, Jonathan Edwin

    2013-01-01

    This dissertation analyzes the problem of metaphor identification in linguistic and computational semantics, considering both manual and automatic approaches. It describes a manual approach to metaphor identification, the Metaphoricity Measurement Procedure (MMP), and compares this approach with other manual approaches. The dissertation then…

  16. Automatic Error Analysis Using Intervals

    Science.gov (United States)

    Rothwell, E. J.; Cloud, M. J.

    2012-01-01

    A technique for automatic error analysis using interval mathematics is introduced. A comparison to standard error propagation methods shows that in cases involving complicated formulas, the interval approach gives comparable error estimates with much less effort. Several examples are considered, and numerical errors are computed using the INTLAB…

  17. Trevi Park: Automatic Parking System

    OpenAIRE

    ECT Team, Purdue

    2007-01-01

    TreviPark is an underground, multi-story stacking system that holds cars efficiently, thus reducing the cost of each parking space, as a fully automatic parking system intended to maximize space utilization in parking structures. TreviPark costs less than the price of a conventional urban garage and takes up half the volume and 80% of the depth.

  18. Automatic agar tray inoculation device

    Science.gov (United States)

    Wilkins, J. R.; Mills, S. M.

    1972-01-01

    Automatic agar tray inoculation device is simple in design and foolproof in operation. It employs either conventional inoculating loop or cotton swab for uniform inoculation of agar media, and it allows technician to carry on with other activities while tray is being inoculated.

  19. An Automatic Program Synthesis Bibliography.

    Science.gov (United States)

    1988-01-19

    experimentation of the BIS system. Interna- tional Journal of Man-Machine Studies, 17:173-188, 1982. [67] A F Cardenas . Technology for automatic...Philadelphia, PA, May 1978. [110] B L Gates and J A van Hulzen. Proceedings of European Conference on Computer Algebra (EUROCAL 85), pages 583-584. Volume 203

  20. Automatic milking : a better understanding

    NARCIS (Netherlands)

    Meijering, A.; Hogeveen, H.; Koning, de C.J.A.M.

    2004-01-01

    In 2000 the book Robotic Milking, reflecting the proceedings of an International Symposium which was held in The Netherlands came out. At that time, commercial introduction of automatic milking systems was no longer obstructed by technological inadequacies. Particularly in a few west-European countr

  1. Intuitionistic hybrid logic

    DEFF Research Database (Denmark)

    Braüner, Torben

    2011-01-01

    Intuitionistic hybrid logic is hybrid modal logic over an intuitionistic logic basis instead of a classical logical basis. In this short paper we introduce intuitionistic hybrid logic and we give a survey of work in the area.......Intuitionistic hybrid logic is hybrid modal logic over an intuitionistic logic basis instead of a classical logical basis. In this short paper we introduce intuitionistic hybrid logic and we give a survey of work in the area....

  2. Continuity Controlled Hybrid Automata

    OpenAIRE

    Bergstra, J. A.; Middelburg, C.A.

    2004-01-01

    We investigate the connections between the process algebra for hybrid systems of Bergstra and Middelburg and the formalism of hybrid automata of Henzinger et al. We give interpretations of hybrid automata in the process algebra for hybrid systems and compare them with the standard interpretation of hybrid automata as timed transition systems. We also relate the synchronized product operator on hybrid automata to the parallel composition operator of the process algebra. It turns out that the f...

  3. Automatic Thread-Level Parallelization in the Chombo AMR Library

    Energy Technology Data Exchange (ETDEWEB)

    Christen, Matthias; Keen, Noel; Ligocki, Terry; Oliker, Leonid; Shalf, John; Van Straalen, Brian; Williams, Samuel

    2011-05-26

    The increasing on-chip parallelism has some substantial implications for HPC applications. Currently, hybrid programming models (typically MPI+OpenMP) are employed for mapping software to the hardware in order to leverage the hardware?s architectural features. In this paper, we present an approach that automatically introduces thread level parallelism into Chombo, a parallel adaptive mesh refinement framework for finite difference type PDE solvers. In Chombo, core algorithms are specified in the ChomboFortran, a macro language extension to F77 that is part of the Chombo framework. This domain-specific language forms an already used target language for an automatic migration of the large number of existing algorithms into a hybrid MPI+OpenMP implementation. It also provides access to the auto-tuning methodology that enables tuning certain aspects of an algorithm to hardware characteristics. Performance measurements are presented for a few of the most relevant kernels with respect to a specific application benchmark using this technique as well as benchmark results for the entire application. The kernel benchmarks show that, using auto-tuning, up to a factor of 11 in performance was gained with 4 threads with respect to the serial reference implementation.

  4. Automatic particle detection and sorting in an electrokinetic microfluidic chip.

    Science.gov (United States)

    Song, Yongxin; Peng, Ran; Wang, Junsheng; Pan, Xinxiang; Sun, Yeqing; Li, Dongqing

    2013-03-01

    This paper reports a lab-on-a-chip device that can automatically detect and sort particles based on their size differences with a high resolution. The PDMS-glass microfluidic chip is made by soft-lithography technique. A differential resistive pulse sensor is employed to electrically detect the sizes of the particles in EOF generated by applying DC voltages across channels. The detected resistive pulse sensor signals, whose amplitudes are proportional to particles' sizes, will automatically trigger the sorting process that is controlled by applying a voltage pulse (36 V) whenever a target particle is detected. This method was applied to automatically detect and sort polystyrene particles and microalgae in aqueous solutions. Sorting 5 μm polymer particle from a mixture of 4- and 5-μm polystyrene particles in aqueous solution, i.e. 1 μm sorting resolution, was demonstrated. The device described in this paper is simple, automatic, and label-free with high sorting resolution. It has wide applications in sample pretreatment and target particles detection. © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  5. Arabidopsis hybrid speciation processes.

    Science.gov (United States)

    Schmickl, Roswitha; Koch, Marcus A

    2011-08-23

    The genus Arabidopsis provides a unique opportunity to study fundamental biological questions in plant sciences using the diploid model species Arabidopsis thaliana and Arabidopsis lyrata. However, only a few studies have focused on introgression and hybrid speciation in Arabidopsis, although polyploidy is a common phenomenon within this genus. More recently, there is growing evidence of significant gene flow between the various Arabidopsis species. So far, we know Arabidopsis suecica and Arabidopsis kamchatica as fully stabilized allopolyploid species. Both species evolved during Pleistocene glaciation and deglaciation cycles in Fennoscandinavia and the amphi-Beringian region, respectively. These hybrid studies were conducted either on a phylogeographic scale or reconstructed experimentally in the laboratory. In our study we focus at a regional and population level. Our research area is located in the foothills of the eastern Austrian Alps, where two Arabidopsis species, Arabidopsis arenosa and A. lyrata ssp. petraea, are sympatrically distributed. Our hypothesis of genetic introgression, migration, and adaptation to the changing environment during the Pleistocene has been confirmed: We observed significant, mainly unidirectional gene flow between the two species, which has given rise to the tetraploid A. lyrata. This cytotype was able to escape from the narrow ecological niche occupied by diploid A. lyrata ssp. petraea on limestone outcrops by migrating northward into siliceous areas, leaving behind a trail of genetic differentiation.

  6. Hybridized tetraquarks

    Directory of Open Access Journals (Sweden)

    A. Esposito

    2016-07-01

    Full Text Available We propose a new interpretation of the neutral and charged X,Z exotic hadron resonances. Hybridized-tetraquarks are neither purely compact tetraquark states nor bound or loosely bound molecules but rather a manifestation of the interplay between the two. While meson molecules need a negative or zero binding energy, its counterpart for h-tetraquarks is required to be positive. The formation mechanism of this new class of hadrons is inspired by that of Feshbach metastable states in atomic physics. The recent claim of an exotic resonance in the Bs0π± channel by the D0 Collaboration and the negative result presented subsequently by the LHCb Collaboration are understood in this scheme, together with a considerable portion of available data on X,Z particles. Considerations on a state with the same quantum numbers as the X(5568 are also made.

  7. Hybridized Tetraquarks

    CERN Document Server

    Esposito, A.; Polosa, A.D.

    2016-01-01

    We propose a new interpretation of the neutral and charged X, Z exotic hadron resonances. Hybridized-tetraquarks are neither purely compact tetraquark states nor bound or loosely bound molecules. The latter would require a negative or zero binding energy whose counterpart in h-tetraquarks is a positive quantity. The formation mechanism of this new class of hadrons is inspired by that of Feshbach metastable states in atomic physics. The recent claim of an exotic resonance in the Bs pi+- channel by the D0 collaboration and the negative result presented subsequently by the LHCb collaboration are understood in this scheme, together with a considerable portion of available data on X, Z particles. Considerations on a state with the same quantum numbers as the X(5568) are also made.

  8. Automatic Control System for Neutron Laboratory Safety

    Institute of Scientific and Technical Information of China (English)

    ZHAO; Xiao; ZHANG; Guo-guang; FENG; Shu-qiang; SU; Dan; YANG; Guo-zhao; ZHANG; Shuai

    2015-01-01

    In order to cooperate with the experiment of neutron generator,and realize the automatic control in the experiment,a set of automatic control system for the safety of the neutron laboratory is designed.The system block diagram is shown as Fig.1.Automatic control device is for processing switch signal,so PLC is selected as the core component

  9. An Automatic Proof of Euler's Formula

    Directory of Open Access Journals (Sweden)

    Jun Zhang

    2005-05-01

    Full Text Available In this information age, everything is digitalized. The encoding of functions and the automatic proof of functions are important. This paper will discuss the automatic calculation for Taylor expansion coefficients, as an example, it can be applied to prove Euler's formula automatically.

  10. Self-Compassion and Automatic Thoughts

    Science.gov (United States)

    Akin, Ahmet

    2012-01-01

    The aim of this research is to examine the relationships between self-compassion and automatic thoughts. Participants were 299 university students. In this study, the Self-compassion Scale and the Automatic Thoughts Questionnaire were used. The relationships between self-compassion and automatic thoughts were examined using correlation analysis…

  11. 8 CFR 1205.1 - Automatic revocation.

    Science.gov (United States)

    2010-01-01

    ... 8 Aliens and Nationality 1 2010-01-01 2010-01-01 false Automatic revocation. 1205.1 Section 1205.1... REGULATIONS REVOCATION OF APPROVAL OF PETITIONS § 1205.1 Automatic revocation. (a) Reasons for automatic revocation. The approval of a petition or self-petition made under section 204 of the Act and in...

  12. 8 CFR 205.1 - Automatic revocation.

    Science.gov (United States)

    2010-01-01

    ... 8 Aliens and Nationality 1 2010-01-01 2010-01-01 false Automatic revocation. 205.1 Section 205.1 Aliens and Nationality DEPARTMENT OF HOMELAND SECURITY IMMIGRATION REGULATIONS REVOCATION OF APPROVAL OF PETITIONS § 205.1 Automatic revocation. (a) Reasons for automatic revocation. The approval of a petition...

  13. Hybrid male sterility and genome-wide misexpression of male reproductive proteases.

    Science.gov (United States)

    Gomes, Suzanne; Civetta, Alberto

    2015-07-06

    Hybrid male sterility is a common barrier to gene flow between species. Previous studies have posited a link between misregulation of spermatogenesis genes in interspecies hybrids and sterility. However, in the absence of fully fertile control hybrids, it is impossible to differentiate between misregulation associated with sterility vs. fast male gene regulatory evolution. Here, we differentiate between these two possibilities using a D. pseudoobscura species pair that experiences unidirectional hybrid sterility. We identify genes uniquely misexpressed in sterile hybrid male reproductive tracts via RNA-seq. The sterile male hybrids had more misregulated and more over or under expressed genes relative to parental species than the fertile male hybrids. Proteases were the only gene ontology class overrepresented among uniquely misexpressed genes, with four located within a previously identified hybrid male sterility locus. This result highlights the potential role of a previously unexplored class of genes in interspecific hybrid male sterility and speciation.

  14. Hybrid Models of Alternative Current Filter for Hvdc

    Directory of Open Access Journals (Sweden)

    Ufa Ruslan A.

    2017-01-01

    Full Text Available Based on a hybrid simulation concept of HVDC, the developed hybrid AC filter models, providing the sufficiently full and adequate modeling of all single continuous spectrum of quasi-steady-state and transient processes in the filter, are presented. The obtained results suggest that usage of the hybrid simulation approach is carried out a methodically accurate with guaranteed instrumental error solution of differential equation systems of mathematical models of HVDC.

  15. Automatic spikes detection in seismogram

    Institute of Scientific and Technical Information of China (English)

    王海军; 靳平; 刘贵忠

    2003-01-01

    @@ Data processing for seismic network is very complex and fussy, because a lot of data is recorded in seismic network every day, which make it impossible to process these data all by manual work. Therefore, seismic data should be processed automatically to produce a initial results about events detection and location. Afterwards, these results are reviewed and modified by analyst. In automatic processing data quality checking is important. There are three main problem data thatexist in real seismic records, which include: spike, repeated data and dropouts. Spike is defined as isolated large amplitude point; the other two problem datahave the same features that amplitude of sample points are uniform in a interval. In data quality checking, the first step is to detect and statistic problem data in a data segment, if percent of problem data exceed a threshold, then the whole data segment is masked and not be processed in the later process.

  16. Automatic Schema Evolution in Root

    Institute of Scientific and Technical Information of China (English)

    ReneBrun; FonsRademakers

    2001-01-01

    ROOT version 3(spring 2001) supports automatic class schema evolution.In addition this version also produces files that are self-describing.This is achieved by storing in each file a record with the description of all the persistent classes in the file.Being self-describing guarantees that a file can always be read later,its structure browsed and objects inspected.also when the library with the compiled code of these classes is missing The schema evolution mechanism supports the frequent case when multiple data sets generated with many different class versions must be analyzed in the same session.ROOT supports the automatic generation of C++ code describing the data objects in a file.

  17. Physics of Automatic Target Recognition

    CERN Document Server

    Sadjadi, Firooz

    2007-01-01

    Physics of Automatic Target Recognition addresses the fundamental physical bases of sensing, and information extraction in the state-of-the art automatic target recognition field. It explores both passive and active multispectral sensing, polarimetric diversity, complex signature exploitation, sensor and processing adaptation, transformation of electromagnetic and acoustic waves in their interactions with targets, background clutter, transmission media, and sensing elements. The general inverse scattering, and advanced signal processing techniques and scientific evaluation methodologies being used in this multi disciplinary field will be part of this exposition. The issues of modeling of target signatures in various spectral modalities, LADAR, IR, SAR, high resolution radar, acoustic, seismic, visible, hyperspectral, in diverse geometric aspects will be addressed. The methods for signal processing and classification will cover concepts such as sensor adaptive and artificial neural networks, time reversal filt...

  18. Automatic design of magazine covers

    Science.gov (United States)

    Jahanian, Ali; Liu, Jerry; Tretter, Daniel R.; Lin, Qian; Damera-Venkata, Niranjan; O'Brien-Strain, Eamonn; Lee, Seungyon; Fan, Jian; Allebach, Jan P.

    2012-03-01

    In this paper, we propose a system for automatic design of magazine covers that quantifies a number of concepts from art and aesthetics. Our solution to automatic design of this type of media has been shaped by input from professional designers, magazine art directors and editorial boards, and journalists. Consequently, a number of principles in design and rules in designing magazine covers are delineated. Several techniques are derived and employed in order to quantify and implement these principles and rules in the format of a software framework. At this stage, our framework divides the task of design into three main modules: layout of magazine cover elements, choice of color for masthead and cover lines, and typography of cover lines. Feedback from professional designers on our designs suggests that our results are congruent with their intuition.

  19. Periodic orbits of hybrid systems and parameter estimation via AD.

    Energy Technology Data Exchange (ETDEWEB)

    Guckenheimer, John. (Cornell University); Phipps, Eric Todd; Casey, Richard (INRIA Sophia-Antipolis)

    2004-07-01

    Rhythmic, periodic processes are ubiquitous in biological systems; for example, the heart beat, walking, circadian rhythms and the menstrual cycle. Modeling these processes with high fidelity as periodic orbits of dynamical systems is challenging because: (1) (most) nonlinear differential equations can only be solved numerically; (2) accurate computation requires solving boundary value problems; (3) many problems and solutions are only piecewise smooth; (4) many problems require solving differential-algebraic equations; (5) sensitivity information for parameter dependence of solutions requires solving variational equations; and (6) truncation errors in numerical integration degrade performance of optimization methods for parameter estimation. In addition, mathematical models of biological processes frequently contain many poorly-known parameters, and the problems associated with this impedes the construction of detailed, high-fidelity models. Modelers are often faced with the difficult problem of using simulations of a nonlinear model, with complex dynamics and many parameters, to match experimental data. Improved computational tools for exploring parameter space and fitting models to data are clearly needed. This paper describes techniques for computing periodic orbits in systems of hybrid differential-algebraic equations and parameter estimation methods for fitting these orbits to data. These techniques make extensive use of automatic differentiation to accurately and efficiently evaluate derivatives for time integration, parameter sensitivities, root finding and optimization. The boundary value problem representing a periodic orbit in a hybrid system of differential algebraic equations is discretized via multiple-shooting using a high-degree Taylor series integration method [GM00, Phi03]. Numerical solutions to the shooting equations are then estimated by a Newton process yielding an approximate periodic orbit. A metric is defined for computing the distance

  20. The Automatic Galaxy Collision Software

    CERN Document Server

    Smith, Beverly J; Pfeiffer, Phillip; Perkins, Sam; Barkanic, Jason; Fritts, Steve; Southerland, Derek; Manchikalapudi, Dinikar; Baker, Matt; Luckey, John; Franklin, Coral; Moffett, Amanda; Struck, Curtis

    2009-01-01

    The key to understanding the physical processes that occur during galaxy interactions is dynamical modeling, and especially the detailed matching of numerical models to specific systems. To make modeling interacting galaxies more efficient, we have constructed the `Automatic Galaxy Collision' (AGC) code, which requires less human intervention in finding good matches to data. We present some preliminary results from this code for the well-studied system Arp 284 (NGC 7714/5), and address questions of uniqueness of solutions.

  1. Automatic computation of transfer functions

    Science.gov (United States)

    Atcitty, Stanley; Watson, Luke Dale

    2015-04-14

    Technologies pertaining to the automatic computation of transfer functions for a physical system are described herein. The physical system is one of an electrical system, a mechanical system, an electromechanical system, an electrochemical system, or an electromagnetic system. A netlist in the form of a matrix comprises data that is indicative of elements in the physical system, values for the elements in the physical system, and structure of the physical system. Transfer functions for the physical system are computed based upon the netlist.

  2. Annual review in automatic programming

    CERN Document Server

    Halpern, Mark I; Bolliet, Louis

    2014-01-01

    Computer Science and Technology and their Application is an eight-chapter book that first presents a tutorial on database organization. Subsequent chapters describe the general concepts of Simula 67 programming language; incremental compilation and conversational interpretation; dynamic syntax; the ALGOL 68. Other chapters discuss the general purpose conversational system for graphical programming and automatic theorem proving based on resolution. A survey of extensible programming language is also shown.

  3. Automatic Detection of Fake News

    OpenAIRE

    Pérez-Rosas, Verónica; Kleinberg, Bennett; Lefevre, Alexandra; Mihalcea, Rada

    2017-01-01

    The proliferation of misleading information in everyday access media outlets such as social media feeds, news blogs, and online newspapers have made it challenging to identify trustworthy news sources, thus increasing the need for computational tools able to provide insights into the reliability of online content. In this paper, we focus on the automatic identification of fake content in online news. Our contribution is twofold. First, we introduce two novel datasets for the task of fake news...

  4. The Automatic Measurement of Targets

    DEFF Research Database (Denmark)

    Höhle, Joachim

    1997-01-01

    The automatic measurement of targets is demonstrated by means of a theoretical example and by an interactive measuring program for real imagery from a réseau camera. The used strategy is a combination of two methods: the maximum correlation coefficient and the correlation in the subpixel range. F...... interactive software is also part of a computer-assisted learning program on digital photogrammetry....

  5. Automatically-Programed Machine Tools

    Science.gov (United States)

    Purves, L.; Clerman, N.

    1985-01-01

    Software produces cutter location files for numerically-controlled machine tools. APT, acronym for Automatically Programed Tools, is among most widely used software systems for computerized machine tools. APT developed for explicit purpose of providing effective software system for programing NC machine tools. APT system includes specification of APT programing language and language processor, which executes APT statements and generates NC machine-tool motions specified by APT statements.

  6. Automatically-Programed Machine Tools

    Science.gov (United States)

    Purves, L.; Clerman, N.

    1985-01-01

    Software produces cutter location files for numerically-controlled machine tools. APT, acronym for Automatically Programed Tools, is among most widely used software systems for computerized machine tools. APT developed for explicit purpose of providing effective software system for programing NC machine tools. APT system includes specification of APT programing language and language processor, which executes APT statements and generates NC machine-tool motions specified by APT statements.

  7. Automatic translation among spoken languages

    Science.gov (United States)

    Walter, Sharon M.; Costigan, Kelly

    1994-01-01

    The Machine Aided Voice Translation (MAVT) system was developed in response to the shortage of experienced military field interrogators with both foreign language proficiency and interrogation skills. Combining speech recognition, machine translation, and speech generation technologies, the MAVT accepts an interrogator's spoken English question and translates it into spoken Spanish. The spoken Spanish response of the potential informant can then be translated into spoken English. Potential military and civilian applications for automatic spoken language translation technology are discussed in this paper.

  8. The Mark II Automatic Diflux

    Directory of Open Access Journals (Sweden)

    Jean L Rasson

    2011-07-01

    Full Text Available We report here on the new realization of an automatic fluxgate theodolite able to perform unattended absolute geomagnetic declination and inclination measurements: the AUTODIF MKII. The main changes of this version compared with the former one are presented as well as the better specifications we expect now. We also explain the absolute orientation procedure by means of a laser beam and a corner cube and the method for leveling the fluxgate sensor, which is different from a conventional DIflux theodolite.

  9. Automatic classification of seismo-volcanic signatures

    Science.gov (United States)

    Malfante, Marielle; Dalla Mura, Mauro; Mars, Jérôme; Macedo, Orlando; Inza, Adolfo; Métaxian, Jean-Philippe

    2017-04-01

    The prediction of volcanic eruptions and the evaluation of their associated risks is still a timely and open issue. For this purpose, several types of signals are recorded in the proximity of volcanoes and then analysed by experts. Typically, seismic signals that are considered as precursor or indicator of an active volcanic phase are detected and manually classified. In this work, we propose an architecture for automatic classification of seismo-volcanic waves. The system we propose is based on supervised machine learning. Specifically, a prediction model is built from a large dataset of labelled examples by the means of a learning algorithm (Support Vector Machine or Random Forest). Four main steps are involved: (i) preprocess the signals, (ii) from each signal, extract features that are useful for the classes discrimination, (iii) use an automatic learning algorithm to train a prediction model and (iv) classify (i.e., assign a semantic label) newly recorded and unlabelled examples. Our main contribution lies in the definition of the feature space used to represent the signals (i.e., in the choice of the features to extract from the data). Feature vectors describe the data in a space of lower dimension with respect to the original one. Ideally, signals are separable in the feature space depending on their classes. For this work, we consider a large set of features (79) gathered from an extensive state of the art in both acoustic and seismic fields. An analysis of this feature set shows that for the application of interest, 11 features are sufficient to discriminate the data. The architecture is tested on 4725 seismic events recorded between June 2006 and September 2011 at Ubinas, the most active volcano of Peru. Six main classes of signals are considered: volcanic tremors (TR), long period (LP), volcano-tectonic (VT), explosion (EXP), hybrids (HIB) and tornillo (TOR). Our model reaches above 90% of accuracy, thereby validating the proposed architecture and the

  10. A MODULAR APPROACH TO SIMULATION WITH AUTOMATIC SENSITIVITY CALCULATION

    Energy Technology Data Exchange (ETDEWEB)

    K. HANSON; G. CUNNINGHAM

    2001-02-01

    When using simulation codes, one often has the task of minimizing a scalar objective function with respect to numerous parameters. This situation occurs when trying to fit (assimilate) data or trying to optimize an engineering design. For simulations in which the objective function to be minimized is reasonably well behaved, that is, is differentiable and does not contain too many multiple minima, gradient-based optimization methods can reduce the number of function evaluations required to determine the minimizing parameters. However, gradient-based methods are only advantageous if one can efficiently evaluate the gradients of the objective function. Adjoint differentiation efficiently provides these sensitivities. One way to obtain code for calculating adjoint sensitivities is to use special compilers to process the simulation code. However, this approach is not always so ''automatic''. We will describe a modular approach to constructing simulation codes, which permits adjoint differentiation to be incorporated with relative ease.

  11. Automatic tracking sensor camera system

    Science.gov (United States)

    Tsuda, Takao; Kato, Daiichiro; Ishikawa, Akio; Inoue, Seiki

    2001-04-01

    We are developing a sensor camera system for automatically tracking and determining the positions of subjects moving in three-dimensions. The system is intended to operate even within areas as large as soccer fields. The system measures the 3D coordinates of the object while driving the pan and tilt movements of camera heads, and the degree of zoom of the lenses. Its principal feature is that it automatically zooms in as the object moves farther away and out as the object moves closer. This maintains the area of the object as a fixed position of the image. This feature makes stable detection by the image processing possible. We are planning to use the system to detect the position of a soccer ball during a soccer game. In this paper, we describe the configuration of the developing automatic tracking sensor camera system. We then give an analysis of the movements of the ball within images of games, the results of experiments on method of image processing used to detect the ball, and the results of other experiments to verify the accuracy of an experimental system. These results show that the system is sufficiently accurate in terms of obtaining positions in three-dimensions.

  12. Enhanced performance hybrid-arq

    KAUST Repository

    Fareed, Muhammad Mehboob

    2016-06-16

    Apparatuses, computer readable media, and methods are provided for enhancing hybrid automatic repeat request (ARQ) performance. In an example method, a communication device transmits a first element of a vector, where the vector is selected using the information bits to be transmitted as an index in a code book. In some embodiments, this code book is constructed using Linear Constellation Precoding (LCP). If a NACK is received, the communication device transmits a second element of the vector. The process of transmitting elements of the vector continues until an ACK is received or the maximum number of transmission attempts is reached. If an ACK is received, the communication device transmits a first element of another vector of the code book that encodes a second set of information bits. This procedure may continue until all information bits have been transmitted successfully.

  13. AUTOMATIC EXTRACTION OF BUILDING OUTLINE FROM HIGH RESOLUTION AERIAL IMAGERY

    Directory of Open Access Journals (Sweden)

    Y. Wang

    2016-06-01

    Full Text Available In this paper, a new approach for automated extraction of building boundary from high resolution imagery is proposed. The proposed approach uses both geometric and spectral properties of a building to detect and locate buildings accurately. It consists of automatic generation of high quality point cloud from the imagery, building detection from point cloud, classification of building roof and generation of building outline. Point cloud is generated from the imagery automatically using semi-global image matching technology. Buildings are detected from the differential surface generated from the point cloud. Further classification of building roof is performed in order to generate accurate building outline. Finally classified building roof is converted into vector format. Numerous tests have been done on images in different locations and results are presented in the paper.

  14. Automatic Extraction of Building Outline from High Resolution Aerial Imagery

    Science.gov (United States)

    Wang, Yandong

    2016-06-01

    In this paper, a new approach for automated extraction of building boundary from high resolution imagery is proposed. The proposed approach uses both geometric and spectral properties of a building to detect and locate buildings accurately. It consists of automatic generation of high quality point cloud from the imagery, building detection from point cloud, classification of building roof and generation of building outline. Point cloud is generated from the imagery automatically using semi-global image matching technology. Buildings are detected from the differential surface generated from the point cloud. Further classification of building roof is performed in order to generate accurate building outline. Finally classified building roof is converted into vector format. Numerous tests have been done on images in different locations and results are presented in the paper.

  15. Continuity Controlled Hybrid Automata

    NARCIS (Netherlands)

    Bergstra, J.A.; Middelburg, C.A.

    2004-01-01

    We investigate the connections between the process algebra for hybrid systems of Bergstra and Middelburg and the formalism of hybrid automata of Henzinger et al. We give interpretations of hybrid automata in the process algebra for hybrid systems and compare them with the standard interpretation of

  16. Continuity controlled Hybrid Automata

    NARCIS (Netherlands)

    Bergstra, J.A.; Middelburg, C.A.

    2008-01-01

    We investigate the connections between the process algebra for hybrid systems of Bergstra and Middelburg and the formalism of hybrid automata of Henzinger et al. We give interpretations of hybrid automata in the process algebra for hybrid systems and compare them with the standard interpretation of

  17. Preparation and Characterization of Organic/Inorganic Hybrid Nanofibers

    Institute of Scientific and Technical Information of China (English)

    WU Ning; WEI Qu-fu; LI Qi; XU Wen-zheng

    2006-01-01

    A new class of nanocomposites based on organic and inorganic species integrated at a nanoscale has obtained more attention these years. Organic-inorganic hybrids have both the advantages of organic materials, such as light weight, flexibility and good moldability, and inorganic materials, such as high strength, heat stability and chemical resistance. In this work, PVAc/TiO2 organicinorganic hybrid was prepared by sol-gel process. Electrospinning technique was used to fabricate PVAc/TiO2hybrid nanofibers. The structures and properties of the hybrid nanofibers were characterized by Scanning Electron Microscopy (SEM), Atomic Force Microscope (AFM),Differential Scanning Calorimeter (DSC) and Fouriertransform infrared (FTIR) spectra. SEM and AFM were employed to study the topography of the hybrid nanofibers.The chemical structure of the hybrid nanofibers were examined by FTIR. The DSC scansrevealed the second order transition temperature of the hybrid materials were higher than PVAc.

  18. Automatic twin vessel recrystallizer. Effective purification of acetaminophen by successive automatic recrystallization and absolute determination of purity by DSC.

    Science.gov (United States)

    Nara, Osamu

    2011-01-24

    I describe an interchangeable twin vessel (J, N) automatic glass recrystallizer that eliminates the time-consuming recovery and recycling of crystals for repeated recrystallization. The sample goes in the dissolution vessel J containing a magnetic stir-bar K; J is clamped to the upper joint H of recrystallizer body D. Empty crystallization vessel N is clamped to the lower joint M. Pure solvent is delivered to the dissolution vessel and the crystallization vessel via the head of the condenser A. Crystallization vessel is heated (P). The dissolution reservoir is stirred and heated by the solvent vapor (F). Continuous outflow of filtrate E out of J keeps N at a stable boiling temperature. This results in efficient dissolution, evaporation and separation of pure crystals Q. Pure solvent in the dissolution reservoir is recovered by suction. Empty dissolution and crystallization vessels are detached. Stirrer magnet is transferred to the crystallization vessel and the role of the vessels are then reversed. Evacuating mother liquor out of the upper twin vessel, the apparatus unit is ready for the next automatic recrystallization by refilling twin vessels with pure solvent. We show successive automatic recrystallization of acetaminophen from diethyl ether obtaining acetaminophen of higher melting temperatures than USP and JP reference standards by 8× automatic recrystallization, 96% yield at each stage. Also, I demonstrate a novel approach to the determination of absolute purity by combining the successive automatic recrystallization with differential scanning calorimetry (DSC) measurement requiring no reference standards. This involves the measurement of the criterial melting temperature T(0) corresponding to the 100% pure material and quantitative ΔT in DSC based on the van't Hoff law of melting point depression. The purity of six commercial acetaminophen samples and reference standards and an eight times recrystallized product evaluated were 98.8 mol%, 97.9 mol%, 99

  19. Winner of the 2013 Young Investigator Award for the Society for Biomaterials annual meeting and exposition, April 10-13, 2013, Boston, Massachusetts. Osteogenic differentiation of mesenchymal stem cells on demineralized and devitalized biodegradable polymer and extracellular matrix hybrid constructs.

    Science.gov (United States)

    Thibault, Richard A; Mikos, Antonios G; Kasper, F Kurtis

    2013-05-01

    Devitalization and demineralization processing of biodegradable polymer and extracellular matrix (ECM) hybrid constructs was explored for the effect on the retention of ECM components and construct osteogenicity. Hybrid constructs were generated by seeding osteogenically predifferentiated rat mesenchymal stem cells (MSCs) onto electrospun poly(ε-caprolactone) fiber meshes and culturing in osteogenic medium for 12 or 16 days within a flow perfusion bioreactor to create an ECM coating. The resulting constructs were then either devitalized (using a freeze-thaw or a detergent technique), devitalized and demineralized, or left untreated, and subsequently characterized for DNA, glycosaminoglycan, collagen, and calcium content. The osteogenicity of each construct was investigated by culturing MSCs on the hybrid constructs within a flow perfusion bioreactor for 4, 8, and 12 days in osteogenic medium. Histological staining demonstrated that devitalization via the freeze-thaw method retained the thickest coating of ECM components within the constructs. Demineralization and devitalization processing of ECM coated constructs resulted in a decrease in their osteogenicity.

  20. The concept of automatic reinforcement: implications for behavioral research in developmental disabilities.

    Science.gov (United States)

    Vollmer, T R

    1994-01-01

    Automatic reinforcement refers to situations in which behavior is maintained by operant mechanisms independent of the social environment. A number of difficulties exist in conducting an adequate functional analysis of automatically reinforced aberrant behavior. For example, sources of reinforcement are often difficult or impossible to identify, manipulate, or control. Further, the development of treatments is often difficult because many behavioral interventions, such as timeout, involve manipulation of the social environment--an approach that may be functionally irrelevant in the case of automatic reinforcement. This article discusses the problems inherent in the analysis of automatically reinforced behavior and reviews four classes of treatment that are compatible with that behavioral function. The four types of intervention reviewed include manipulations of establishing operations, sensory extinction, differential reinforcement, and punishment. Suggestions for future research are discussed.

  1. Automatic textual annotation of video news based on semantic visual object extraction

    Science.gov (United States)

    Boujemaa, Nozha; Fleuret, Francois; Gouet, Valerie; Sahbi, Hichem

    2003-12-01

    In this paper, we present our work for automatic generation of textual metadata based on visual content analysis of video news. We present two methods for semantic object detection and recognition from a cross modal image-text thesaurus. These thesaurus represent a supervised association between models and semantic labels. This paper is concerned with two semantic objects: faces and Tv logos. In the first part, we present our work for efficient face detection and recogniton with automatic name generation. This method allows us also to suggest the textual annotation of shots close-up estimation. On the other hand, we were interested to automatically detect and recognize different Tv logos present on incoming different news from different Tv Channels. This work was done jointly with the French Tv Channel TF1 within the "MediaWorks" project that consists on an hybrid text-image indexing and retrieval plateform for video news.

  2. Thermal stability of PMMA–clay hybrids

    Indian Academy of Sciences (India)

    Tanushree Choudhury; Nirendra M Misra

    2010-04-01

    Materials with small particle size are being extensively used in composites and hybrid materials. Exfoliated clay–polymer hybrids show enhanced properties. Exfoliation of clay platelets can be affected by selecting dispersing agents. In the present work, clay dispersed by natural dispersant (soap stone powder), cetyl trimethyl ammonium bromide (CTAB) dispersed clay and acid clay (amorphous clay) are taken. They are then polymerized with poly methyl methacrylate (PMMA) by solution intercalation method. The thermal stability of these different clay–PMMA hybrids have been studied and compared with that of pure PMMA by differential scanning calorimeter (DSC). The bonding of clay with PMMA has been studied by IR. Morphology of clay–PMMA hybrids has been shown by SEM and XRD which indicate partially exfoliated structure in T606-4 and intercalated structures in T606-6 and T606-2.

  3. Unification of automatic target tracking and automatic target recognition

    Science.gov (United States)

    Schachter, Bruce J.

    2014-06-01

    The subject being addressed is how an automatic target tracker (ATT) and an automatic target recognizer (ATR) can be fused together so tightly and so well that their distinctiveness becomes lost in the merger. This has historically not been the case outside of biology and a few academic papers. The biological model of ATT∪ATR arises from dynamic patterns of activity distributed across many neural circuits and structures (including retina). The information that the brain receives from the eyes is "old news" at the time that it receives it. The eyes and brain forecast a tracked object's future position, rather than relying on received retinal position. Anticipation of the next moment - building up a consistent perception - is accomplished under difficult conditions: motion (eyes, head, body, scene background, target) and processing limitations (neural noise, delays, eye jitter, distractions). Not only does the human vision system surmount these problems, but it has innate mechanisms to exploit motion in support of target detection and classification. Biological vision doesn't normally operate on snapshots. Feature extraction, detection and recognition are spatiotemporal. When vision is viewed as a spatiotemporal process, target detection, recognition, tracking, event detection and activity recognition, do not seem as distinct as they are in current ATT and ATR designs. They appear as similar mechanism taking place at varying time scales. A framework is provided for unifying ATT and ATR.

  4. Automatic Synthesis of Anthropomorphic Pulmonary CT Phantoms.

    Directory of Open Access Journals (Sweden)

    Daniel Jimenez-Carretero

    Full Text Available The great density and structural complexity of pulmonary vessels and airways impose limitations on the generation of accurate reference standards, which are critical in training and in the validation of image processing methods for features such as pulmonary vessel segmentation or artery-vein (AV separations. The design of synthetic computed tomography (CT images of the lung could overcome these difficulties by providing a database of pseudorealistic cases in a constrained and controlled scenario where each part of the image is differentiated unequivocally. This work demonstrates a complete framework to generate computational anthropomorphic CT phantoms of the human lung automatically. Starting from biological and image-based knowledge about the topology and relationships between structures, the system is able to generate synthetic pulmonary arteries, veins, and airways using iterative growth methods that can be merged into a final simulated lung with realistic features. A dataset of 24 labeled anthropomorphic pulmonary CT phantoms were synthesized with the proposed system. Visual examination and quantitative measurements of intensity distributions, dispersion of structures and relationships between pulmonary air and blood flow systems show good correspondence between real and synthetic lungs (p > 0.05 with low Cohen's d effect size and AUC values, supporting the potentiality of the tool and the usefulness of the generated phantoms in the biomedical image processing field.

  5. Automatic composition of MRI and SPECT images

    Energy Technology Data Exchange (ETDEWEB)

    Nishimura, Hiromi [Research Inst. of Brain and Blood Vessels, Akita (Japan)

    1999-12-01

    The new method to automatically compose MRI image and SPECT image was devised to support the SPECT image which was inferior in the morphological information. This method is a kind of the coordinate transformation to obtain maximal agreement between images using cross correlation of MRI image and SPECT image as the evaluation function to show the degree of the agreement. For the calculation of the cross correlation, MRI T1 weighted image and the morphological information of SPECT image treated by the spatial quadratic differentiation (Laplacian) were used. This method does not require to fix the control point in the tomographic imaging, and can be also applied to PET other than SPECT. This is also useful to follow up the chronological change of a patient by composition among SPECT images and among PET images. Since this method is focused on the internal structure of brain, it is also useful for cases such as cerebral infarction which brain structure has little change. But this method is still under the trial and the examination of the accuracy remained. (K.H.)

  6. SPHOTOM - Package for an Automatic Multicolour Photometry

    Science.gov (United States)

    Parimucha, Š.; Vaňko, M.; Mikloš, P.

    2012-04-01

    We present basic information about package SPHOTOM for an automatic multicolour photometry. This package is in development for the creation of a photometric pipe-line, which we plan to use in the near future with our new instruments. It could operate in two independent modes, (i) GUI mode, in which the user can select images and control functions of package through interface and (ii) command line mode, in which all processes are controlled using a main parameter file. SPHOTOM is developed as a universal package for Linux based systems with easy implementation for different observatories. The photometric part of the package is based on the Sextractor code, which allows us to detect all objects on the images and perform their photometry with different apertures. We can also perform astrometric solutions for all images for a correct cross-identification of the stars on the images. The result is a catalogue of all objects with their instrumental photometric measurements which are consequently used for a differential magnitudes calculations with one or more comparison stars, transformations to an international system, and determinations of colour indices.

  7. Automatic Synthesis of Anthropomorphic Pulmonary CT Phantoms

    Science.gov (United States)

    Jimenez-Carretero, Daniel; San Jose Estepar, Raul; Diaz Cacio, Mario; Ledesma-Carbayo, Maria J.

    2016-01-01

    The great density and structural complexity of pulmonary vessels and airways impose limitations on the generation of accurate reference standards, which are critical in training and in the validation of image processing methods for features such as pulmonary vessel segmentation or artery–vein (AV) separations. The design of synthetic computed tomography (CT) images of the lung could overcome these difficulties by providing a database of pseudorealistic cases in a constrained and controlled scenario where each part of the image is differentiated unequivocally. This work demonstrates a complete framework to generate computational anthropomorphic CT phantoms of the human lung automatically. Starting from biological and image-based knowledge about the topology and relationships between structures, the system is able to generate synthetic pulmonary arteries, veins, and airways using iterative growth methods that can be merged into a final simulated lung with realistic features. A dataset of 24 labeled anthropomorphic pulmonary CT phantoms were synthesized with the proposed system. Visual examination and quantitative measurements of intensity distributions, dispersion of structures and relationships between pulmonary air and blood flow systems show good correspondence between real and synthetic lungs (p > 0.05 with low Cohen’s d effect size and AUC values), supporting the potentiality of the tool and the usefulness of the generated phantoms in the biomedical image processing field. PMID:26731653

  8. Annual review in automatic programming

    CERN Document Server

    Goodman, Richard

    2014-01-01

    Annual Review in Automatic Programming, Volume 2 is a collection of papers that discusses the controversy about the suitability of COBOL as a common business oriented language, and the development of different common languages for scientific computation. A couple of papers describes the use of the Genie system in numerical calculation and analyzes Mercury autocode in terms of a phrase structure language, such as in the source language, target language, the order structure of ATLAS, and the meta-syntactical language of the assembly program. Other papers explain interference or an ""intermediate

  9. Automatic analysis of multiparty meetings

    Indian Academy of Sciences (India)

    Steve Renals

    2011-10-01

    This paper is about the recognition and interpretation of multiparty meetings captured as audio, video and other signals. This is a challenging task since the meetings consist of spontaneous and conversational interactions between a number of participants: it is a multimodal, multiparty, multistream problem. We discuss the capture and annotation of the Augmented Multiparty Interaction (AMI) meeting corpus, the development of a meeting speech recognition system, and systems for the automatic segmentation, summarization and social processing of meetings, together with some example applications based on these systems.

  10. Annual review in automatic programming

    CERN Document Server

    Goodman, Richard

    2014-01-01

    Annual Review in Automatic Programming, Volume 4 is a collection of papers that deals with the GIER ALGOL compiler, a parameterized compiler based on mechanical linguistics, and the JOVIAL language. A couple of papers describes a commercial use of stacks, an IBM system, and what an ideal computer program support system should be. One paper reviews the system of compilation, the development of a more advanced language, programming techniques, machine independence, and program transfer to other machines. Another paper describes the ALGOL 60 system for the GIER machine including running ALGOL pro

  11. Automatic Inference of DATR Theories

    CERN Document Server

    Barg, P

    1996-01-01

    This paper presents an approach for the automatic acquisition of linguistic knowledge from unstructured data. The acquired knowledge is represented in the lexical knowledge representation language DATR. A set of transformation rules that establish inheritance relationships and a default-inference algorithm make up the basis components of the system. Since the overall approach is not restricted to a special domain, the heuristic inference strategy uses criteria to evaluate the quality of a DATR theory, where different domains may require different criteria. The system is applied to the linguistic learning task of German noun inflection.

  12. Commutated automatic gain control system

    Science.gov (United States)

    Yost, S. R.

    1982-01-01

    The commutated automatic gain control (AGC) system was designed and built for the prototype Loran-C receiver is discussed. The current version of the prototype receiver, the Mini L-80, was tested initially in 1980. The receiver uses a super jolt microcomputer to control a memory aided phase loop (MAPLL). The microcomputer also controls the input/output, latitude/longitude conversion, and the recently added AGC system. The AGC control adjusts the level of each station signal, such that the early portion of each envelope rise is about at the same amplitude in the receiver envelope detector.

  13. On automatic machine translation evaluation

    Directory of Open Access Journals (Sweden)

    Darinka Verdonik

    2013-05-01

    Full Text Available An important task of developing machine translation (MT is evaluating system performance. Automatic measures are most commonly used for this task, as manual evaluation is time-consuming and costly. However, to perform an objective evaluation is not a trivial task. Automatic measures, such as BLEU, TER, NIST, METEOR etc., have their own weaknesses, while manual evaluations are also problematic since they are always to some extent subjective. In this paper we test the influence of a test set on the results of automatic MT evaluation for the subtitling domain. Translating subtitles is a rather specific task for MT, since subtitles are a sort of summarization of spoken text rather than a direct translation of (written text. Additional problem when translating language pair that does not include English, in our example Slovene-Serbian, is that commonly the translations are done from English to Serbian and from English to Slovenian, and not directly, since most of the TV production is originally filmed in English. All this poses additional challenges to MT and consequently to MT evaluation. Automatic evaluation is based on a reference translation, which is usually taken from an existing parallel corpus and marked as a test set. In our experiments, we compare the evaluation results for the same MT system output using three types of test set. In the first round, the test set are 4000 subtitles from the parallel corpus of subtitles SUMAT. These subtitles are not direct translations from Serbian to Slovene or vice versa, but are based on an English original. In the second round, the test set are 1000 subtitles randomly extracted from the first test set and translated anew, from Serbian to Slovenian, based solely on the Serbian written subtitles. In the third round, the test set are the same 1000 subtitles, however this time the Slovene translations were obtained by manually correcting the Slovene MT outputs so that they are correct translations of the

  14. [Comparative molecular cytogenetic characterization of partial wheat-wheatgrass hybrids].

    Science.gov (United States)

    Krupin, P Yu; Divashuk, M G; Belov, V I; Glukhova, L I; Aleksandrov, O S; Karlov, G I

    2011-04-01

    The chromosomal composition of the Zernokormovaya 169, Istra 1, Ostankinskaya, and Otrastayushchaya 38 cultivars of octoploid partial wheat-wheatgrass hybrids was studied using genomic in situ hybridization (GISH). Differentiation of wheatgrass chromosomes by the distribution of the GISH signal along the chromosome was revealed. The wheatgrass chromosomes of the hybrid cultivars studied in the work differed in the type of differentiation, centromeric index, and absolute size. The cytogenetic distinctions of these chromosomes revealed by us can be used in making crosses and in studying the transmission through gametes of additional wheatgrass chromosomes.

  15. Symbolic computations in applied differential geometry

    OpenAIRE

    Gragert, P.K.H.; Kersten, P. H. M.; Martini, R.

    1983-01-01

    The main aim of this paper is to contribute to the automatic calculations in differential geometry and its applications, with emphasis on the prolongation theory of Estabrook and Wahlquist, and the calculation of invariance groups of exterior differential systems. A large number of worked examples have been included in the text to demonstrate the concrete manipulations in practice. In the appendix, a list of programs discussed in the paper is added.

  16. Differential characters

    CERN Document Server

    Bär, Christian

    2014-01-01

    Providing a systematic introduction to differential characters as introduced by Cheeger and Simons, this text describes important concepts such as fiber integration, higher dimensional holonomy, transgression, and the product structure in a geometric manner. Differential characters form a model of what is nowadays called differential cohomology, which is the mathematical structure behind the higher gauge theories in physics.  

  17. Efficient Hybrid Propulsion System Development and Integration

    Science.gov (United States)

    2011-08-10

    utilize real measurements and parameters within the simulation model [3,4,5]. Moreover, it is also important to build a single core control model in...ICE, engine disconnect clutch , ISG, 6-speed automatic transmission, differential, final drives at the rear axle; FMOT, 2-speed manual transmission...calculation, torque management, safety limit monitoring and fault tolerance, component/local and system/global efficiency calculations, power split

  18. Students' Feedback Preferences: How Do Students React to Timely and Automatically Generated Assessment Feedback?

    Science.gov (United States)

    Bayerlein, Leopold

    2014-01-01

    This study assesses whether or not undergraduate and postgraduate accounting students at an Australian university differentiate between timely feedback and extremely timely feedback, and whether or not the replacement of manually written formal assessment feedback with automatically generated feedback influences students' perception of feedback…

  19. The Masculinity of Money: Automatic Stereotypes Predict Gender Differences in Estimated Salaries

    Science.gov (United States)

    Williams, Melissa J.; Paluck, Elizabeth Levy; Spencer-Rodgers, Julie

    2010-01-01

    We present the first empirical investigation of why men are assumed to earn higher salaries than women (the "salary estimation effect"). Although this phenomenon is typically attributed to conscious consideration of the national wage gap (i.e., real inequities in salary), we hypothesize instead that it reflects differential, automatic economic…

  20. Semi-automatic grading system in histologic and immunohistochemistry analysis to evaluate in vitro chondrogenesis

    OpenAIRE

    Johana Guevara Morales; María Lucía Gutiérrez; Luis Alejandro Barrera

    2012-01-01

    During embryological limb formation mesenchymal cells condense and differentiate into chondrocytes, in a process known aschondrogenesis. These chondrocytes synthesize glycosaminoglycans (GAGs), thus playing an important role in this process.A simplified system in vitro chondrogenesis, using adult mesenchymal stromal cells (MSCs) has been demonstrated. Thisdifferentiation potential is usually assessed by histological staining. Objective. Establishment of a semi-automatic grading systemfor hist...

  1. Predictive Validity of Automatic Self-Associations for the Onset of Anxiety Disorders

    NARCIS (Netherlands)

    Glashouwer, Klaske A.; de Jong, Peter J.; Penninx, Brenda W. J. H.

    2011-01-01

    Negative self-cognitions are assumed to play an important role in the onset of anxiety disorders. Current dual-process models emphasize the relevance of differentiating between more automatic and more deliberate self-cognitions in this respect. Therefore, this study was designed to test the prognost

  2. Students' Feedback Preferences: How Do Students React to Timely and Automatically Generated Assessment Feedback?

    Science.gov (United States)

    Bayerlein, Leopold

    2014-01-01

    This study assesses whether or not undergraduate and postgraduate accounting students at an Australian university differentiate between timely feedback and extremely timely feedback, and whether or not the replacement of manually written formal assessment feedback with automatically generated feedback influences students' perception of…

  3. Measures of Information Processing in Rapid Automatized Naming (RAN) and Their Relation To Reading.

    Science.gov (United States)

    Neuhaus, Graham; Foorman, Barbara R.; Francis, David J.; Carlson, Coleen D.

    2001-01-01

    Examined articulation and interarticulation (pause) times on Rapid Automatized Naming Tests for first- and second-graders. Found that pause and articulation times for RAN letters and objects were not reliably related, compared to RAN numbers articulation and pause durations. Subtest pause durations were differentially related to reading. RAN…

  4. Automatic generation of tourist brochures

    KAUST Repository

    Birsak, Michael

    2014-05-01

    We present a novel framework for the automatic generation of tourist brochures that include routing instructions and additional information presented in the form of so-called detail lenses. The first contribution of this paper is the automatic creation of layouts for the brochures. Our approach is based on the minimization of an energy function that combines multiple goals: positioning of the lenses as close as possible to the corresponding region shown in an overview map, keeping the number of lenses low, and an efficient numbering of the lenses. The second contribution is a route-aware simplification of the graph of streets used for traveling between the points of interest (POIs). This is done by reducing the graph consisting of all shortest paths through the minimization of an energy function. The output is a subset of street segments that enable traveling between all the POIs without considerable detours, while at the same time guaranteeing a clutter-free visualization. © 2014 The Author(s) Computer Graphics Forum © 2014 The Eurographics Association and John Wiley & Sons Ltd. Published by John Wiley & Sons Ltd.

  5. ACIR: automatic cochlea image registration

    Science.gov (United States)

    Al-Dhamari, Ibraheem; Bauer, Sabine; Paulus, Dietrich; Lissek, Friedrich; Jacob, Roland

    2017-02-01

    Efficient Cochlear Implant (CI) surgery requires prior knowledge of the cochlea's size and its characteristics. This information helps to select suitable implants for different patients. To get these measurements, a segmentation method of cochlea medical images is needed. An important pre-processing step for good cochlea segmentation involves efficient image registration. The cochlea's small size and complex structure, in addition to the different resolutions and head positions during imaging, reveals a big challenge for the automated registration of the different image modalities. In this paper, an Automatic Cochlea Image Registration (ACIR) method for multi- modal human cochlea images is proposed. This method is based on using small areas that have clear structures from both input images instead of registering the complete image. It uses the Adaptive Stochastic Gradient Descent Optimizer (ASGD) and Mattes's Mutual Information metric (MMI) to estimate 3D rigid transform parameters. The use of state of the art medical image registration optimizers published over the last two years are studied and compared quantitatively using the standard Dice Similarity Coefficient (DSC). ACIR requires only 4.86 seconds on average to align cochlea images automatically and to put all the modalities in the same spatial locations without human interference. The source code is based on the tool elastix and is provided for free as a 3D Slicer plugin. Another contribution of this work is a proposed public cochlea standard dataset which can be downloaded for free from a public XNAT server.

  6. QXT-full Automatic Saccharify Instrument

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    QXT is a full automatic saccharify instrument of eight holes . The instrument use process control technology of micro-computer. It can realize automatic of saccharify full process correctly. Due to adapt control mode of high precision expert PID and digit automatic calibration technology of fill micro computer, not only ensure precision of linear raising temperature region (1 ℃ /min) and constant temperature region (temperature error ±0.2 ℃), but also overcome the disturbance

  7. Automatic Control of Water Pumping Stations

    Institute of Scientific and Technical Information of China (English)

    Muhannad Alrheeh; JIANG Zhengfeng

    2006-01-01

    Automatic Control of pumps is an interesting proposal to operate water pumping stations among many kinds of water pumping stations according to their functions.In this paper, our pumping station is being used for water supply system. This paper is to introduce the idea of pump controller and the important factors that must be considering when we want to design automatic control system of water pumping stations. Then the automatic control circuit with the function of all components will be introduced.

  8. An integrated lab-on-chip for rapid identification and simultaneous differentiation of tropical pathogens

    National Research Council Canada - National Science Library

    Tan, Jeslin J L; Capozzoli, Monica; Sato, Mitsuharu; Watthanaworawit, Wanitda; Ling, Clare L; Mauduit, Marjorie; Malleret, Benoît; Grüner, Anne-Charlotte; Tan, Rosemary; Nosten, François H; Snounou, Georges; Rénia, Laurent; Ng, Lisa F P

    2014-01-01

    .... In this study, a microfluidic lab-on-chip integrating multiplex molecular amplification and DNA microarray hybridization was developed for simultaneous detection and species differentiation of 26...

  9. Marine genetic swamping: hybrids replace an obligately estuarine fish.

    Science.gov (United States)

    Roberts, David G; Gray, Charles A; West, Ronald J; Ayre, David J

    2010-02-01

    Populations of obligately estuarine taxa are potentially small and isolated and may lack genetic variation and display regional differentiation as a result of drift and inbreeding. Hybridization with a wide-ranging marine congener should introduce genetic variation and reduce the effects of inbreeding depression and genetic drift. However, high levels of hybridization can cause demographic and genetic swamping. In southeastern Australia hybridization occurs between obligately estuarine Black bream (Acanthopagrus butcheri) and migratory marine Yellowfin bream (Acanthopagrus australis). Here, we surveyed genetic variation at eight microsatellite loci and the mitochondrial control region of juvenile fish from five coastal lagoons (including temporal replication in two lagoons) (total n = 970) to determine the frequency and persistence of hybridization, and its likely consequence for the estuarine restricted A. butcheri. Of 688 juvenile fish genotyped 95% were either A. australis (347) or hybrids (309); only 5% (32) were A. butcheri. Most hybrids were later generation hybrids or A. butcheri backcrosses, which are likely multi-generational residents within lagoons. Far greater proportions of hybrid juveniles were found within two lagoons that are generally closed to the ocean (>90% hybrid fish within generally closed lagoons vs. 12-27% in permanently or intermittently open lagoons). In both lagoons, this was consistent across multiple cohorts of fish [79-97% hybrid fish (n = 282)]. Hybridization and introgression represent a major threat to the persistence of A. butcheri and have yet to be investigated for large numbers of estuarine taxa.

  10. General motors front wheel drive 2-mode hybrid transmission

    Energy Technology Data Exchange (ETDEWEB)

    Hendrickson, James [General Motors Corp., Pontiac, MI (United States). New Transmission Products Group.; Holmes, Alan G. [General Motors Corp., Pontiac, MI (United States). Powertrain Hybrid Architecture

    2009-07-01

    General Motors now expands the application of two-mode hybrid technology to front wheel drive vehicles with the development of a hybrid electric transmission packaged into essentially the same space as a conventional automatic transmission for front wheel drive. This was accomplished using a space-efficient arrangement based on two planetary gear sets and electric motor-generators with large internal diameters. A combination of damper and hydraulically-controlled clutch allow comfortable shutdown and restarting of large-displacement engines in front wheel drive vehicles. The hybrid system delivers electric low-speed urban driving, two continuously variable ranges of transmission speed ratios, four fixed transmission speed ratios, electric acceleration boosting, and regenerative braking. In the first vehicle application, the two-mode hybrid helps to reduce vehicle fuel consumption by approximately one-third. (orig.)

  11. Ouroboros: A Tool for Building Generic, Hybrid, Divide& Conquer Algorithms

    Energy Technology Data Exchange (ETDEWEB)

    Johnson, J R; Foster, I

    2003-05-01

    A hybrid divide and conquer algorithm is one that switches from a divide and conquer to an iterative strategy at a specified problem size. Such algorithms can provide significant performance improvements relative to alternatives that use a single strategy. However, the identification of the optimal problem size at which to switch for a particular algorithm and platform can be challenging. We describe an automated approach to this problem that first conducts experiments to explore the performance space on a particular platform and then uses the resulting performance data to construct an optimal hybrid algorithm on that platform. We implement this technique in a tool, ''Ouroboros'', that automatically constructs a high-performance hybrid algorithm from a set of registered algorithms. We present results obtained with this tool for several classical divide and conquer algorithms, including matrix multiply and sorting, and report speedups of up to six times achieved over non-hybrid algorithms.

  12. Hybridization and genome evolution I: The role of contingency during hybrid speciation

    Directory of Open Access Journals (Sweden)

    Fabrice EROUKHMANOFF, Richard I. BAILEY, Glenn-Peter SæTRE

    2013-10-01

    Full Text Available Homoploid hybrid speciation (HHS involves the recombination of two differentiated genomes into a novel, functional one without a change in chromosome number. Theoretically, there are numerous ways for two parental genomes to recombine. Hence, chance may play a large role in the formation of a hybrid species. If these genome combinations can evolve rapidly following hybridization and sympatric situations are numerous, recurrent homoploid hybrid speciation is a possibility. We argue that three different, but not mutually exclusive, types of contingencies could influence this process. First, many of these “hopeful monsters” of recombinant parent genotypes would likely have low fitness. Only specific combinations of parental genomic contributions may produce viable, intra-fertile hybrid species able to accommodate potential constraints arising from intragenomic conflict. Second, ecological conditions (competition, geography of the contact zones or the initial frequency of both parent species might favor different outcomes ranging from sympatric coexistence to the formation of hybrid swarms and ultimately hybrid speciation. Finally, history may also play an important role in promoting or constraining recurrent HHS if multiple hybridization events occur sequentially and parental divergence or isolation differs along this continuum. We discuss under which conditions HHS may occur multiple times in parallel and to what extent recombination and selection may fuse the parent genomes in the same or different ways. We conclude by examining different approaches that might help to solve this intriguing evolutionary puzzle [Current Zoology 59 (5: 667-674, 2013]. 

  13. Towards automatic classification of all WISE sources

    Science.gov (United States)

    Kurcz, A.; Bilicki, M.; Solarz, A.; Krupa, M.; Pollo, A.; Małek, K.

    2016-07-01

    Context. The Wide-field Infrared Survey Explorer (WISE) has detected hundreds of millions of sources over the entire sky. Classifying them reliably is, however, a challenging task owing to degeneracies in WISE multicolour space and low levels of detection in its two longest-wavelength bandpasses. Simple colour cuts are often not sufficient; for satisfactory levels of completeness and purity, more sophisticated classification methods are needed. Aims: Here we aim to obtain comprehensive and reliable star, galaxy, and quasar catalogues based on automatic source classification in full-sky WISE data. This means that the final classification will employ only parameters available from WISE itself, in particular those which are reliably measured for the majority of sources. Methods: For the automatic classification we applied a supervised machine learning algorithm, support vector machines (SVM). It requires a training sample with relevant classes already identified, and we chose to use the SDSS spectroscopic dataset (DR10) for that purpose. We tested the performance of two kernels used by the classifier, and determined the minimum number of sources in the training set required to achieve stable classification, as well as the minimum dimension of the parameter space. We also tested SVM classification accuracy as a function of extinction and apparent magnitude. Thus, the calibrated classifier was finally applied to all-sky WISE data, flux-limited to 16 mag (Vega) in the 3.4 μm channel. Results: By calibrating on the test data drawn from SDSS, we first established that a polynomial kernel is preferred over a radial one for this particular dataset. Next, using three classification parameters (W1 magnitude, W1-W2 colour, and a differential aperture magnitude) we obtained very good classification efficiency in all the tests. At the bright end, the completeness for stars and galaxies reaches ~95%, deteriorating to ~80% at W1 = 16 mag, while for quasars it stays at a level of

  14. From hybrid swarms to swarms of hybrids

    Science.gov (United States)

    The introgression of modern humans (Homo sapiens) with Neanderthals 40,000 YBP after a half-million years of separation, may have led to the best example of a hybrid swarm on earth. Modern trade and transportation in support of the human hybrids has continued to introduce additional species, genotyp...

  15. The Hybrid Museum: Hybrid Economies of Meaning

    DEFF Research Database (Denmark)

    Vestergaard, Vitus

    2013-01-01

    this article shows that there are two different museum mindsets where the second mindset leans towards participatory practices. It is shown how a museum can support a hybrid economy of meaning that builds on both a user generated economy of meaning and an institutional economy of meaning and adds value to both....... Such a museum is referred to as a hybrid museum....

  16. Haldane's rule in an avian system: using cline theory and divergence population genetics to test for differential introgression of mitochondrial, autosomal, and sex-linked loci across the Passerina bunting hybrid zone.

    Science.gov (United States)

    Carling, Matthew D; Brumfield, Robb T

    2008-10-01

    Using cline fitting and divergence population genetics, we tested a prediction of Haldane's rule: autosomal alleles should introgress more than z-linked alleles or mitochondrial haplotypes across the Passerina amoena/Passerina cyanea (Aves: Cardinalidae) hybrid zone. We screened 222 individuals collected along a transect in the Great Plains of North America that spans the contact zone for mitochondrial (two genes), autosomal (four loci) and z-linked (two loci) markers. Maximum-likelihood cline widths estimated from the mitochondrial (223 km) and z-linked (309 km) datasets were significantly narrower on average than the autosomal cline widths (466 km). We also found that mean coalescent-based estimates of introgression were larger for the autosomal loci (0.63 genes/generation, scaled to the mutation rate mu) than for both the mitochondrial (0.27) and z-linked loci (0.59). These patterns are consistent with Haldane's rule, but the among-locus variation also suggests many independently segregating loci are required to investigate introgression patterns across the genome. These results provide the first comprehensive comparison of mitochondrial, sex-linked, and autosomal loci across an avian hybrid zone and add to the body of evidence suggesting that sex chromosomes play an important role in the formation and maintenance of reproductive isolation between closely related species.

  17. Hydraulic Hybrid Vehicles

    Science.gov (United States)

    EPA and the United Parcel Service (UPS) have developed a hydraulic hybrid delivery vehicle to explore and demonstrate the environmental benefits of the hydraulic hybrid for urban pick-up and delivery fleets.

  18. Hybrid Management in Hospitals

    DEFF Research Database (Denmark)

    Byrkjeflot, Haldor; Jespersen, Peter Kragh

    2010-01-01

    Artiklen indeholder et litteraturbaseret studium af ledelsesformer i sygehuse, hvor sundhedsfaglig ledelse og generel ledelse mikses til hybride ledelsesformer......Artiklen indeholder et litteraturbaseret studium af ledelsesformer i sygehuse, hvor sundhedsfaglig ledelse og generel ledelse mikses til hybride ledelsesformer...

  19. Resin Catalyst Hybrids

    Institute of Scientific and Technical Information of China (English)

    S. Asaoka

    2005-01-01

    @@ 1Introduction: What are resin catalyst hybrids? There are typically two types of resin catalyst. One is acidic resin which representative is polystyrene sulfonic acid. The other is basic resin which is availed as metal complex support. The objective items of this study on resin catalyst are consisting of pellet hybrid, equilibrium hybrid and function hybrid of acid and base,as shown in Fig. 1[1-5].

  20. Mesoscale hybrid calibration artifact

    Science.gov (United States)

    Tran, Hy D.; Claudet, Andre A.; Oliver, Andrew D.

    2010-09-07

    A mesoscale calibration artifact, also called a hybrid artifact, suitable for hybrid dimensional measurement and the method for make the artifact. The hybrid artifact has structural characteristics that make it suitable for dimensional measurement in both vision-based systems and touch-probe-based systems. The hybrid artifact employs the intersection of bulk-micromachined planes to fabricate edges that are sharp to the nanometer level and intersecting planes with crystal-lattice-defined angles.

  1. Travelling Waves in Hybrid Chemotaxis Models

    KAUST Repository

    Franz, Benjamin

    2013-12-18

    Hybrid models of chemotaxis combine agent-based models of cells with partial differential equation models of extracellular chemical signals. In this paper, travelling wave properties of hybrid models of bacterial chemotaxis are investigated. Bacteria are modelled using an agent-based (individual-based) approach with internal dynamics describing signal transduction. In addition to the chemotactic behaviour of the bacteria, the individual-based model also includes cell proliferation and death. Cells consume the extracellular nutrient field (chemoattractant), which is modelled using a partial differential equation. Mesoscopic and macroscopic equations representing the behaviour of the hybrid model are derived and the existence of travelling wave solutions for these models is established. It is shown that cell proliferation is necessary for the existence of non-transient (stationary) travelling waves in hybrid models. Additionally, a numerical comparison between the wave speeds of the continuum models and the hybrid models shows good agreement in the case of weak chemotaxis and qualitative agreement for the strong chemotaxis case. In the case of slow cell adaptation, we detect oscillating behaviour of the wave, which cannot be explained by mean-field approximations. © 2013 Society for Mathematical Biology.

  2. Realizing the Hybrid Library.

    Science.gov (United States)

    Pinfield, Stephen; Eaton, Jonathan; Edwards, Catherine; Russell, Rosemary; Wissenburg, Astrid; Wynne, Peter

    1998-01-01

    Outlines five projects currently funded by the United Kingdom's Electronic Libraries Program (eLib): HyLiFe (Hybrid Library of the Future), MALIBU (MAnaging the hybrid Library for the Benefit of Users), HeadLine (Hybrid Electronic Access and Delivery in the Library Networked Environment), ATHENS (authentication scheme), and BUILDER (Birmingham…

  3. Homoploid hybrid expectations

    Science.gov (United States)

    Homoploid hybrid speciation occurs when a stable, fertile, and reproductively isolated lineage results from hybridization between two distinct species without a change in ploidy level. Reproductive isolation between a homoploid hybrid species and its parents is generally attained via chromosomal re...

  4. Hybrid armature projectile

    Science.gov (United States)

    Hawke, Ronald S.; Asay, James R.; Hall, Clint A.; Konrad, Carl H.; Sauve, Gerald L.; Shahinpoor, Mohsen; Susoeff, Allan R.

    1993-01-01

    A projectile for a railgun that uses a hybrid armature and provides a seed block around part of the outer surface of the projectile to seed the hybrid plasma brush. In addition, the hybrid armature is continuously vaporized to replenish plasma in a plasma armature to provide a tandem armature and provides a unique ridge and groove to reduce plasama blowby.

  5. Intraply Hybrid Composite Design

    Science.gov (United States)

    Chamis, C. C.; Sinclair, J. H.

    1986-01-01

    Several theoretical approaches combined in program. Intraply hybrid composites investigated theoretically and experimentally at Lewis Research Center. Theories developed during investigations and corroborated by attendant experiments used to develop computer program identified as INHYD (Intraply Hybrid Composite Design). INHYD includes several composites micromechanics theories, intraply hybrid composite theories, and integrated hygrothermomechanical theory. Equations from theories used by program as appropriate for user's specific applications.

  6. Hybrid quantum information processing

    Energy Technology Data Exchange (ETDEWEB)

    Furusawa, Akira [Department of Applied Physics, School of Engineering, The University of Tokyo (Japan)

    2014-12-04

    I will briefly explain the definition and advantage of hybrid quantum information processing, which is hybridization of qubit and continuous-variable technologies. The final goal would be realization of universal gate sets both for qubit and continuous-variable quantum information processing with the hybrid technologies. For that purpose, qubit teleportation with a continuousvariable teleporter is one of the most important ingredients.

  7. Autoclass: An automatic classification system

    Science.gov (United States)

    Stutz, John; Cheeseman, Peter; Hanson, Robin

    1991-01-01

    The task of inferring a set of classes and class descriptions most likely to explain a given data set can be placed on a firm theoretical foundation using Bayesian statistics. Within this framework, and using various mathematical and algorithmic approximations, the AutoClass System searches for the most probable classifications, automatically choosing the number of classes and complexity of class descriptions. A simpler version of AutoClass has been applied to many large real data sets, has discovered new independently-verified phenomena, and has been released as a robust software package. Recent extensions allow attributes to be selectively correlated within particular classes, and allow classes to inherit, or share, model parameters through a class hierarchy. The mathematical foundations of AutoClass are summarized.

  8. Automatic quantification of iris color

    DEFF Research Database (Denmark)

    Christoffersen, S.; Harder, Stine; Andersen, J. D.

    2012-01-01

    An automatic algorithm to quantify the eye colour and structural information from standard hi-resolution photos of the human iris has been developed. Initially, the major structures in the eye region are identified including the pupil, iris, sclera, and eyelashes. Based on this segmentation...... regions. The result is a blue-brown ratio for each eye. Furthermore, an image clustering approach has been used with promising results. The approach is based on using a sparse dictionary of feature vectors learned from a training set of iris regions. The feature vectors contain both local structural...... is completely data driven and it can divide a group of eye images into classes based on structure, colour or a combination of the two. The methods have been tested on a large set of photos with promising results....

  9. Automatic Image Interpolation Using Homography

    Directory of Open Access Journals (Sweden)

    Chi-Tsung Liu

    2010-01-01

    Full Text Available While taking photographs, we often face the problem that unwanted foreground objects (e.g., vehicles, signs, and pedestrians occlude the main subject(s. We propose to apply image interpolation (also known as inpainting techniques to remove unwanted objects in the photographs and to automatically patch the vacancy after the unwanted objects are removed. When given only a single image, if the information loss after the unwanted objects in images being removed is too great, the patching results are usually unsatisfactory. The proposed inpainting techniques employ the homographic constraints in geometry to incorporate multiple images taken from different viewpoints. Our experiment results showed that the proposed techniques could effectively reduce process in searching for potential patches from multiple input images and decide the best patches for the missing regions.

  10. Automatic summarising factors and directions

    CERN Document Server

    Jones, K S

    1998-01-01

    This position paper suggests that progress with automatic summarising demands a better research methodology and a carefully focussed research strategy. In order to develop effective procedures it is necessary to identify and respond to the context factors, i.e. input, purpose, and output factors, that bear on summarising and its evaluation. The paper analyses and illustrates these factors and their implications for evaluation. It then argues that this analysis, together with the state of the art and the intrinsic difficulty of summarising, imply a nearer-term strategy concentrating on shallow, but not surface, text analysis and on indicative summarising. This is illustrated with current work, from which a potentially productive research programme can be developed.

  11. Automatic Network Reconstruction using ASP

    CERN Document Server

    Ostrowski, Max; Durzinsky, Markus; Marwan, Wolfgang; Wagler, Annegret

    2011-01-01

    Building biological models by inferring functional dependencies from experimental data is an im- portant issue in Molecular Biology. To relieve the biologist from this traditionally manual process, various approaches have been proposed to increase the degree of automation. However, available ap- proaches often yield a single model only, rely on specific assumptions, and/or use dedicated, heuris- tic algorithms that are intolerant to changing circumstances or requirements in the view of the rapid progress made in Biotechnology. Our aim is to provide a declarative solution to the problem by ap- peal to Answer Set Programming (ASP) overcoming these difficulties. We build upon an existing approach to Automatic Network Reconstruction proposed by part of the authors. This approach has firm mathematical foundations and is well suited for ASP due to its combinatorial flavor providing a characterization of all models explaining a set of experiments. The usage of ASP has several ben- efits over the existing heuristic a...

  12. Automatic orientation correction for radiographs

    Science.gov (United States)

    Luo, Hui; Luo, Jiebo; Wang, Xiaohui

    2006-03-01

    In picture archiving and communications systems (PACS), images need to be displayed in standardized ways for radiologists' interpretations. However, for most radiographs acquired by computed radiography (CR), digital radiography (DR), or digitized films, the image orientation is undetermined because of the variation of examination conditions and patient situations. To address this problem, an automatic orientation correction method is presented. It first detects the most indicative region for orientation in a radiograph, and then extracts a set of low-level visual features sensitive to rotation from the region. Based on these features, a trained classifier based on a support vector machine is employed to recognize the correct orientation of the radiograph and reorient it to a desired position. A large-scale experiment has been conducted on more than 12,000 radiographs covering a large variety of body parts and projections to validate the method. The overall performance is quite promising, with the success rate of orientation correction reaching 95.2%.

  13. Automatic generation of Chinese character using features fusion from calligraphy and font

    Science.gov (United States)

    Shi, Cao; Xiao, Jianguo; Xu, Canhui; Jia, Wenhua

    2014-02-01

    A spatial statistic based contour feature representation is proposed to achieve extraction of local contour feature from Chinese calligraphy character, and a features fusion strategy is designed to automatically generate new hybrid character, making well use of contour feature of calligraphy and structural feature of font. The features fusion strategy employs dilation and erosion operations iteratively to inject the extracted contour feature from Chinese calligraphy into font, which are similar to "pad" and "cut" in a sculpture progress. Experimental results demonstrate that the generated new hybrid character hold both contour feature of calligraphy and structural feature of font. Especially, two kinds of Chinese calligraphy skills called "Fei Bai" and "Zhang Mo" are imitated in the hybrid character. "Fei Bai" depicts a phenomenon that part of a stroke fade out due to the fast movement of hair brush or the lack of ink, and "Zhang Mo" describes a condition that hair brush holds so much ink that strokes overlap.

  14. Automatic cobb angle determination from radiographic images

    NARCIS (Netherlands)

    Sardjono, Tri Arief; Wilkinson, Michael H.F.; Veldhuizen, Albert G.; Ooijen, van Peter M.A.; Purnama, Ketut E.; Verkerke, Gijsbertus J.

    2013-01-01

    Study Design. Automatic measurement of Cobb angle in patients with scoliosis. Objective. To test the accuracy of an automatic Cobb angle determination method from frontal radiographical images. Summary of Background Data. Thirty-six frontal radiographical images of patients with scoliosis. Met

  15. Automatic Cobb Angle Determination From Radiographic Images

    NARCIS (Netherlands)

    Sardjono, Tri Arief; Wilkinson, Michael H. F.; Veldhuizen, Albert G.; van Ooijen, Peter M. A.; Purnama, Ketut E.; Verkerke, Gijsbertus J.

    2013-01-01

    Study Design. Automatic measurement of Cobb angle in patients with scoliosis. Objective. To test the accuracy of an automatic Cobb angle determination method from frontal radiographical images. Summary of Background Data. Thirty-six frontal radiographical images of patients with scoliosis. Methods.

  16. An Experiment in Automatic Hierarchical Document Classification.

    Science.gov (United States)

    Garland, Kathleen

    1983-01-01

    Describes method of automatic document classification in which documents classed as QA by Library of Congress classification system were clustered at six thresholds by keyword using single link technique. Automatically generated clusters were compared to Library of Congress subclasses, and partial classified hierarchy was formed. Twelve references…

  17. Automatic cobb angle determination from radiographic images

    NARCIS (Netherlands)

    Sardjono, Tri Arief; Wilkinson, Michael H.F.; Veldhuizen, Albert G.; van Ooijen, Peter M.A.; Purnama, Ketut E.; Verkerke, Gijsbertus Jacob

    2013-01-01

    Study Design. Automatic measurement of Cobb angle in patients with scoliosis. Objective. To test the accuracy of an automatic Cobb angle determination method from frontal radiographical images. Summary of Background Data. Thirty-six frontal radiographical images of patients with scoliosis. Methods.

  18. Generalization versus Contextualization in Automatic Evaluation

    Science.gov (United States)

    Gawronski, Bertram; Rydell, Robert J.; Vervliet, Bram; De Houwer, Jan

    2010-01-01

    Research has shown that automatic evaluations can be highly robust and difficult to change, highly malleable and easy to change, and highly context dependent. We tested a representational account of these disparate findings, which specifies the conditions under which automatic evaluations reflect (a) initially acquired information, (b)…

  19. Solar Powered Automatic Shrimp Feeding System

    Directory of Open Access Journals (Sweden)

    Dindo T. Ani

    2015-12-01

    Full Text Available - Automatic system has brought many revolutions in the existing technologies. One among the technologies, which has greater developments, is the solar powered automatic shrimp feeding system. For instance, the solar power which is a renewable energy can be an alternative solution to energy crisis and basically reducing man power by using it in an automatic manner. The researchers believe an automatic shrimp feeding system may help solve problems on manual feeding operations. The project study aimed to design and develop a solar powered automatic shrimp feeding system. It specifically sought to prepare the design specifications of the project, to determine the methods of fabrication and assembly, and to test the response time of the automatic shrimp feeding system. The researchers designed and developed an automatic system which utilizes a 10 hour timer to be set in intervals preferred by the user and will undergo a continuous process. The magnetic contactor acts as a switch connected to the 10 hour timer which controls the activation or termination of electrical loads and powered by means of a solar panel outputting electrical power, and a rechargeable battery in electrical communication with the solar panel for storing the power. By undergoing through series of testing, the components of the modified system were proven functional and were operating within the desired output. It was recommended that the timer to be used should be tested to avoid malfunction and achieve the fully automatic system and that the system may be improved to handle changes in scope of the project.

  20. Differential manifolds

    CERN Document Server

    Kosinski, Antoni A

    2007-01-01

    The concepts of differential topology form the center of many mathematical disciplines such as differential geometry and Lie group theory. Differential Manifolds presents to advanced undergraduates and graduate students the systematic study of the topological structure of smooth manifolds. Author Antoni A. Kosinski, Professor Emeritus of Mathematics at Rutgers University, offers an accessible approach to both the h-cobordism theorem and the classification of differential structures on spheres.""How useful it is,"" noted the Bulletin of the American Mathematical Society, ""to have a single, sho

  1. Hybrid modelling of anaerobic wastewater treatment processes.

    Science.gov (United States)

    Karama, A; Bernard, O; Genovesi, A; Dochain, D; Benhammou, A; Steyer, J P

    2001-01-01

    This paper presents a hybrid approach for the modelling of an anaerobic digestion process. The hybrid model combines a feed-forward network, describing the bacterial kinetics, and the a priori knowledge based on the mass balances of the process components. We have considered an architecture which incorporates the neural network as a static model of unmeasured process parameters (kinetic growth rate) and an integrator for the dynamic representation of the process using a set of dynamic differential equations. The paper contains a description of the neural network component training procedure. The performance of this approach is illustrated with experimental data.

  2. The hydrogen hybrid option

    Energy Technology Data Exchange (ETDEWEB)

    Smith, J.R.

    1993-10-15

    The energy efficiency of various piston engine options for series hybrid automobiles are compared with conventional, battery powered electric, and proton exchange membrane (PEM) fuel cell hybrid automobiles. Gasoline, compressed natural gas (CNG), and hydrogen are considered for these hybrids. The engine and fuel comparisons are done on a basis of equal vehicle weight, drag, and rolling resistance. The relative emissions of these various fueled vehicle options are also presented. It is concluded that a highly optimized, hydrogen fueled, piston engine, series electric hybrid automobile will have efficiency comparable to a similar fuel cell hybrid automobile and will have fewer total emissions than the battery powered vehicle, even without a catalyst.

  3. Hybridization and extinction.

    Science.gov (United States)

    Todesco, Marco; Pascual, Mariana A; Owens, Gregory L; Ostevik, Katherine L; Moyers, Brook T; Hübner, Sariel; Heredia, Sylvia M; Hahn, Min A; Caseys, Celine; Bock, Dan G; Rieseberg, Loren H

    2016-08-01

    Hybridization may drive rare taxa to extinction through genetic swamping, where the rare form is replaced by hybrids, or by demographic swamping, where population growth rates are reduced due to the wasteful production of maladaptive hybrids. Conversely, hybridization may rescue the viability of small, inbred populations. Understanding the factors that contribute to destructive versus constructive outcomes of hybridization is key to managing conservation concerns. Here, we survey the literature for studies of hybridization and extinction to identify the ecological, evolutionary, and genetic factors that critically affect extinction risk through hybridization. We find that while extinction risk is highly situation dependent, genetic swamping is much more frequent than demographic swamping. In addition, human involvement is associated with increased risk and high reproductive isolation with reduced risk. Although climate change is predicted to increase the risk of hybridization-induced extinction, we find little empirical support for this prediction. Similarly, theoretical and experimental studies imply that genetic rescue through hybridization may be equally or more probable than demographic swamping, but our literature survey failed to support this claim. We conclude that halting the introduction of hybridization-prone exotics and restoring mature and diverse habitats that are resistant to hybrid establishment should be management priorities.

  4. Floral traits and pollination ecology of European Arum hybrids.

    Science.gov (United States)

    Chartier, Marion; Liagre, Suzanne; Weiss-Schneeweiss, Hanna; Kolano, Bozena; Bessière, Jean-Marie; Schönenberger, Jürg; Gibernau, Marc

    2016-02-01

    Hybridisation is common in plants and can affect the genetic diversity and ecology of sympatric parental populations. Hybrids may resemble the parental species in their ecology, leading to competition and/or gene introgression; alternatively, they may diverge from the parental phenotypes, possibly leading to the colonisation of new ecological niches and to speciation. Here, we describe inflorescence morphology, ploidy levels, pollinator attractive scents, and pollinator guilds of natural hybrids of Arum italicum and A. maculatum (Araceae) from a site with sympatric parental populations in southern France to determine how these traits affect the hybrid pollination ecology. Hybrids were characterised by inflorescences with a size and a number of flowers more similar to A. italicum than to A. maculatum. In most cases, hybrid stamens were purple, as in A. maculatum, and spadix appendices yellow, as in A. italicum. Hybrid floral scent was closer to that of A. italicum, but shared some compounds with A. maculatum and comprised unique compounds. Also, the pollinator guild of the hybrids was similar to that of A. italicum. Nevertheless, the hybrids attracted a high proportion of individuals of the main pollinator of A. maculatum. We discuss the effects of hybridisation in sympatric parental zones in which hybrids exhibit low levels of reproductive success, the establishment of reproductive barriers between parental species, the role of the composition of floral attractive scents in the differential attraction of pollinators and in the competition between hybrids and their parental species, and the potential of hybridisation to give rise to new independent lineages.

  5. Spoof Plasmon Hybridization

    CERN Document Server

    Zhang, Jingjing; Luo, Yu; Shen, Xiaopeng; Maier, Stefan A; Cui, Tie Jun

    2016-01-01

    Plasmon hybridization between closely spaced nanoparticles yields new hybrid modes not found in individual constituents, allowing for the engineering of resonance properties and field enhancement capabilities of metallic nanostructure. Experimental verifications of plasmon hybridization have been thus far mostly limited to optical frequencies, as metals cannot support surface plasmons at longer wavelengths. Here, we introduce the concept of 'spoof plasmon hybridization' in highly conductive metal structures and investigate experimentally the interaction of localized surface plasmon resonances (LSPR) in adjacent metal disks corrugated with subwavelength spiral patterns. We show that the hybridization results in the splitting of spoof plasmon modes into bonding and antibonding resonances analogous to molecular orbital rule and plasmonic hybridization in optical spectrum. These hybrid modes can be manipulated to produce enormous field enhancements (larger than 5000) by tuning the separation between disks or alte...

  6. Automatic In-Syringe Dispersive Microsolid Phase Extraction Using Magnetic Metal-Organic Frameworks.

    Science.gov (United States)

    Maya, Fernando; Palomino Cabello, Carlos; Estela, Jose Manuel; Cerdà, Víctor; Turnes Palomino, Gemma

    2015-08-04

    A novel automatic strategy for the use of micro- and nanomaterials as sorbents for dispersive microsolid phase extraction (D-μ-SPE) based on the lab-in-syringe concept is reported. Using the developed technique, the implementation of magnetic metal-organic framework (MOF) materials for automatic solid-phase extraction has been achieved for the first time. A hybrid material based on submicrometric MOF crystals containing Fe3O4 nanoparticles was prepared and retained in the surface of a miniature magnetic bar. The magnetic bar was placed inside the syringe of an automatic bidirectional syringe pump, enabling dispersion and subsequent magnetic retrieval of the MOF hybrid material by automatic activation/deactivation of magnetic stirring. Using malachite green (MG) as a model adsorption analyte, a limit of detection of 0.012 mg/L and a linear working range of 0.04-2 mg/L were obtained for a sample volume equal to the syringe volume (5 mL). MG preconcentration was linear up to a volume of 40 mL, obtaining an enrichment factor of 120. The analysis throughput is 18 h(-1), and up to 3000 extractions/g of material can be performed. Recoveries ranging between 95 and 107% were obtained for the analysis of MG in different types of water and trout fish samples. The developed automatic D-μ-SPE technique is a safe alternative for the use of small-sized materials for sample preparation and is readily implementable to other magnetic materials independent of their size and shape and can be easily hyphenated to the majority of detectors and separation techniques.

  7. Analysis of hybrid systems: An ounce of realism can save an infinity of states

    DEFF Research Database (Denmark)

    Fränzle, Martin

    1999-01-01

    no decision procedures due to inherent undecidability. Thus, unlike finite or timed automata, already linear hybrid automata are out-of-scope of fully automatic verification. In this article, we devise a new semi-decision method for safety of linear and polynomial hybrid systems which may only fail......Hybrid automata have been introduced in both control engineering and computer science as a formal model for the dynamics of hybrid discrete-continuous systems. In the case of so-called linear hybrid automata this formalization supports semi-decision procedures for state reachability, yet...... on pathological, practically uninteresting cases. These remaining cases are such that their safety depends on the complete absence of noise, a situation unlikely to occur in real hybrid systems. Furthermore, we show that if low probability effects of noise are ignored akin to the way they are suppressed...

  8. Marine Fish Hybridization

    KAUST Repository

    He, Song

    2017-04-01

    Natural hybridization is reproduction (without artificial influence) between two or more species/populations which are distinguishable from each other by heritable characters. Natural hybridizations among marine fishes were highly underappreciated due to limited research effort; it seems that this phenomenon occurs more often than is commonly recognized. As hybridization plays an important role in biodiversity processes in the marine environment, detecting hybridization events and investigating hybridization is important to understand and protect biodiversity. The first chapter sets the framework for this disseration study. The Cohesion Species Concept was selected as the working definition of a species for this study as it can handle marine fish hybridization events. The concept does not require restrictive species boundaries. A general history and background of natural hybridization in marine fishes is reviewed during in chapter as well. Four marine fish hybridization cases were examed and documented in Chapters 2 to 5. In each case study, at least one diagnostic nuclear marker, screened from among ~14 candidate markers, was found to discriminate the putative hybridizing parent species. To further investigate genetic evidence to support the hybrid status for each hybrid offspring in each case, haploweb analysis on diagnostic markers (nuclear and/or mitochondrial) and the DAPC/PCA analysis on microsatellite data were used. By combining the genetic evidences, morphological traits, and ecological observations together, the potential reasons that triggered each hybridization events and the potential genetic/ecology effects could be discussed. In the last chapter, sequences from 82 pairs of hybridizing parents species (for which COI barcoding sequences were available either on GenBank or in our lab) were collected. By comparing the COI fragment p-distance between each hybridizing parent species, some general questions about marine fish hybridization were discussed: Is

  9. Differential meadows

    NARCIS (Netherlands)

    J.A. Bergstra; A. Ponse

    2008-01-01

    A meadow is a zero totalised field (0^{-1}=0), and a cancellation meadow is a meadow without proper zero divisors. In this paper we consider differential meadows, i.e., meadows equipped with differentiation operators. We give an equational axiomatization of these operators and thus obtain a finite b

  10. On the Existence of an Optimal Control of Ship Automatic Steering Instruments

    Institute of Scientific and Technical Information of China (English)

    GAO Cunchen; GUO Jifeng

    2005-01-01

    The existence of linear quadratic optimal control of ship automatic steering instruments is studied. Firstly, the sufficient conditions for the quadratic integrability of the solutions of linear second order time-variant differential equations are developed. Secondly, the optimal control form of the ship automatic steering instrument is obtained by using the dynamic programming method, which guarantees a minimal ship sway range, during long-distance navigation, by using as little energy as possible. Finally, based on the above mentioned sufficient conditions, the conditions for the realization of optimal control are obtained, which provides a foundation for choosing the weighted coefficients for optimal control in engineering.

  11. Development of an automatic calibration device for high-accuracy low temperature thermometers

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    Based on the analysis and investigation of calibration systems for high-accuracy low temperature thermometers,a new facility for automatic calibration of high-accuracy low temperature thermometers was developed.Continuous calibration for multiple points can be made automatically with this device.According to the thermophysical characteristics of the constant-temperature block in this device,segmented Fuzzy-PID (proportional-integral-differential) algorithm was applied.The experimental results showed that the temperature fluctuation was smaller than ±0.005 K in 30 min.Therefore,this new device can fully meet the calibration requirement of high-precision low temperature thermometers.

  12. Specialized advertising and price competition in vertically differentiated markets

    National Research Council Canada - National Science Library

    Esteban, Lola; Hernández, José M

    2011-01-01

    .... We find that the transition from uniform advertising to targeted advertising can turn a pure vertically differentiated market into a hybrid market which incorporates some features of a monopoly, thus...

  13. 7 CFR 58.418 - Automatic cheese making equipment.

    Science.gov (United States)

    2010-01-01

    ... processing or packaging areas. (c) Automatic salter. The automatic salter shall be constructed of stainless.... The automatic salter shall be constructed so that it can be satisfactorily cleaned. The salting...

  14. A Hierarchy of Tree-Automatic Structures

    CERN Document Server

    Finkel, Olivier

    2011-01-01

    We consider $\\omega^n$-automatic structures which are relational structures whose domain and relations are accepted by automata reading ordinal words of length $\\omega^n$ for some integer $n\\geq 1$. We show that all these structures are $\\omega$-tree-automatic structures presentable by Muller or Rabin tree automata. We prove that the isomorphism relation for $\\omega^2$-automatic (resp. $\\omega^n$-automatic for $n>2$) boolean algebras (respectively, partial orders, rings, commutative rings, non commutative rings, non commutative groups) is not determined by the axiomatic system ZFC. We infer from the proof of the above result that the isomorphism problem for $\\omega^n$-automatic boolean algebras, $n > 1$, (respectively, rings, commutative rings, non commutative rings, non commutative groups) is neither a $\\Sigma_2^1$-set nor a $\\Pi_2^1$-set. We obtain that there exist infinitely many $\\omega^n$-automatic, hence also $\\omega$-tree-automatic, atomless boolean algebras $B_n$, $n\\geq 1$, which are pairwise isomorp...

  15. Automatic Weather Station (AWS) Lidar

    Science.gov (United States)

    Rall, Jonathan A.R.; Abshire, James B.; Spinhirne, James D.; Smith, David E. (Technical Monitor)

    2000-01-01

    An autonomous, low-power atmospheric lidar instrument is being developed at NASA Goddard Space Flight Center. This compact, portable lidar will operate continuously in a temperature controlled enclosure, charge its own batteries through a combination of a small rugged wind generator and solar panels, and transmit its data from remote locations to ground stations via satellite. A network of these instruments will be established by co-locating them at remote Automatic Weather Station (AWS) sites in Antarctica under the auspices of the National Science Foundation (NSF). The NSF Office of Polar Programs provides support to place the weather stations in remote areas of Antarctica in support of meteorological research and operations. The AWS meteorological data will directly benefit the analysis of the lidar data while a network of ground based atmospheric lidar will provide knowledge regarding the temporal evolution and spatial extent of Type la polar stratospheric clouds (PSC). These clouds play a crucial role in the annual austral springtime destruction of stratospheric ozone over Antarctica, i.e. the ozone hole. In addition, the lidar will monitor and record the general atmospheric conditions (transmission and backscatter) of the overlying atmosphere which will benefit the Geoscience Laser Altimeter System (GLAS). Prototype lidar instruments have been deployed to the Amundsen-Scott South Pole Station (1995-96, 2000) and to an Automated Geophysical Observatory site (AGO 1) in January 1999. We report on data acquired with these instruments, instrument performance, and anticipated performance of the AWS Lidar.

  16. Pattern-Driven Automatic Parallelization

    Directory of Open Access Journals (Sweden)

    Christoph W. Kessler

    1996-01-01

    Full Text Available This article describes a knowledge-based system for automatic parallelization of a wide class of sequential numerical codes operating on vectors and dense matrices, and for execution on distributed memory message-passing multiprocessors. Its main feature is a fast and powerful pattern recognition tool that locally identifies frequently occurring computations and programming concepts in the source code. This tool also works for dusty deck codes that have been "encrypted" by former machine-specific code transformations. Successful pattern recognition guides sophisticated code transformations including local algorithm replacement such that the parallelized code need not emerge from the sequential program structure by just parallelizing the loops. It allows access to an expert's knowledge on useful parallel algorithms, available machine-specific library routines, and powerful program transformations. The partially restored program semantics also supports local array alignment, distribution, and redistribution, and allows for faster and more exact prediction of the performance of the parallelized target code than is usually possible.

  17. Automatic segmentation of psoriasis lesions

    Science.gov (United States)

    Ning, Yang; Shi, Chenbo; Wang, Li; Shu, Chang

    2014-10-01

    The automatic segmentation of psoriatic lesions is widely researched these years. It is an important step in Computer-aid methods of calculating PASI for estimation of lesions. Currently those algorithms can only handle single erythema or only deal with scaling segmentation. In practice, scaling and erythema are often mixed together. In order to get the segmentation of lesions area - this paper proposes an algorithm based on Random forests with color and texture features. The algorithm has three steps. The first step, the polarized light is applied based on the skin's Tyndall-effect in the imaging to eliminate the reflection and Lab color space are used for fitting the human perception. The second step, sliding window and its sub windows are used to get textural feature and color feature. In this step, a feature of image roughness has been defined, so that scaling can be easily separated from normal skin. In the end, Random forests will be used to ensure the generalization ability of the algorithm. This algorithm can give reliable segmentation results even the image has different lighting conditions, skin types. In the data set offered by Union Hospital, more than 90% images can be segmented accurately.

  18. Automatic Assessment of Programming assignment

    Directory of Open Access Journals (Sweden)

    Surendra Gupta

    2012-01-01

    Full Text Available In today’s world study of computer’s language is more important. Effective and good programming skills are need full all computer science students. They can be master in programming, only through intensive exercise practices. Due to day by day increasing number of students in the class, the assessment of programming exercises leads to extensive workload for teacher/instructor, particularly if it has to be carried out manually. In this paper, we propose an automatic assessment system for programming assignments, using verification program with random inputs. One of the most important properties of a program is that, it carries out its intended function. The intended function of a program or part of a program can be verified by using inverse function’s verification program. For checking intended functionality and evaluation of a program, we have used verification program. This assessment system has been tested on basic C programming courses, and results shows that it can work well in basic programming exercises, with some initial promising results

  19. Automatic Transmission Of Liquid Nitrogen

    Directory of Open Access Journals (Sweden)

    Sumedh Mhatre

    2015-08-01

    Full Text Available Liquid Nitrogen is one of the major substance used as a chiller in industry such as Ice cream factory Milk Diary Storage of blood sample Blood Bank etc. It helps to maintain the required product at a lower temperature for preservation purpose. We cannot fully utilise the LN2 so practically if we are using 3.75 litre LN2 for a single day then around 12 of LN2 450 ml is wasted due to vaporisation. A pressure relief valve is provided to create a pressure difference. If there is no pressure difference between the cylinder carrying LN2 and its surrounding it will results in damage of container as well as wastage of LN2.Transmission of LN2 from TA55 to BA3 is carried manually .So care must be taken for the transmission of LN2 in order to avoid its wastage. With the help of this project concept the transmission of LN2 will be carried automatically so as to reduce the wastage of LN2 in case of manual operation.

  20. Automatic image cropping for republishing

    Science.gov (United States)

    Cheatle, Phil

    2010-02-01

    Image cropping is an important aspect of creating aesthetically pleasing web pages and repurposing content for different web or printed output layouts. Cropping provides both the possibility of improving the composition of the image, and also the ability to change the aspect ratio of the image to suit the layout design needs of different document or web page formats. This paper presents a method for aesthetically cropping images on the basis of their content. Underlying the approach is a novel segmentation-based saliency method which identifies some regions as "distractions", as an alternative to the conventional "foreground" and "background" classifications. Distractions are a particular problem with typical consumer photos found on social networking websites such as FaceBook, Flickr etc. Automatic cropping is achieved by identifying the main subject area of the image and then using an optimization search to expand this to form an aesthetically pleasing crop. Evaluation of aesthetic functions like auto-crop is difficult as there is no single correct solution. A further contribution of this paper is an automated evaluation method which goes some way towards handling the complexity of aesthetic assessment. This allows crop algorithms to be easily evaluated against a large test set.