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Sample records for hv channels truncated

  1. Functionality of the voltage-gated proton channel truncated in S4.

    Science.gov (United States)

    Sakata, Souhei; Kurokawa, Tatsuki; Nørholm, Morten H H; Takagi, Masahiro; Okochi, Yoshifumi; von Heijne, Gunnar; Okamura, Yasushi

    2010-02-02

    The voltage sensor domain (VSD) is the key module for voltage sensing in voltage-gated ion channels and voltage-sensing phosphatases. Structurally, both the VSD and the recently discovered voltage-gated proton channels (Hv channels) voltage sensor only protein (VSOP) and Hv1 contain four transmembrane segments. The fourth transmembrane segment (S4) of Hv channels contains three periodically aligned arginines (R1, R2, R3). It remains unknown where protons permeate or how voltage sensing is coupled to ion permeation in Hv channels. Here we report that Hv channels truncated just downstream of R2 in the S4 segment retain most channel properties. Two assays, site-directed cysteine-scanning using accessibility of maleimide-reagent as detected by Western blotting and insertion into dog pancreas microsomes, both showed that S4 inserts into the membrane, even if it is truncated between the R2 and R3 positions. These findings provide important clues to the molecular mechanism underlying voltage sensing and proton permeation in Hv channels.

  2. Voltage-Gated Proton Channels: Molecular Biology, Physiology, and Pathophysiology of the HV Family

    Science.gov (United States)

    2013-01-01

    Voltage-gated proton channels (HV) are unique, in part because the ion they conduct is unique. HV channels are perfectly selective for protons and have a very small unitary conductance, both arguably manifestations of the extremely low H+ concentration in physiological solutions. They open with membrane depolarization, but their voltage dependence is strongly regulated by the pH gradient across the membrane (ΔpH), with the result that in most species they normally conduct only outward current. The HV channel protein is strikingly similar to the voltage-sensing domain (VSD, the first four membrane-spanning segments) of voltage-gated K+ and Na+ channels. In higher species, HV channels exist as dimers in which each protomer has its own conduction pathway, yet gating is cooperative. HV channels are phylogenetically diverse, distributed from humans to unicellular marine life, and perhaps even plants. Correspondingly, HV functions vary widely as well, from promoting calcification in coccolithophores and triggering bioluminescent flashes in dinoflagellates to facilitating killing bacteria, airway pH regulation, basophil histamine release, sperm maturation, and B lymphocyte responses in humans. Recent evidence that hHV1 may exacerbate breast cancer metastasis and cerebral damage from ischemic stroke highlights the rapidly expanding recognition of the clinical importance of hHV1. PMID:23589829

  3. The role of Hv1 and CatSper channels in sperm activation.

    Science.gov (United States)

    Lishko, Polina V; Kirichok, Yuriy

    2010-12-01

    Elevations of sperm intracellular pH and Ca(2+) regulate sperm motility, chemotaxis, capacitation and the acrosome reaction, and play a vital role in the ability of the sperm cell to reach and fertilise the egg. In human spermatozoa, the flagellar voltage-gated proton channel Hv1 is the main H(+) extrusion pathway that controls sperm intracellular pH, and the pH-dependent flagellar Ca²(+) channel CatSper is the main pathway for Ca²(+) entry as measured by the whole-cell patch clamp technique. Hv1 and CatSper channels are co-localized within the principal piece of the sperm flagellum. Hv1 is dedicated to proton extrusion from flagellum and is activated by membrane depolarisation, an alkaline extracellular environment, the endocannabinoid anandamide, and removal of extracellular zinc, a potent Hv1 blocker. The CatSper channel is strongly potentiated by intracellular alkalinisation. Since Hv1 and CatSper channels are located in the same subcellular domain, proton extrusion via Hv1 channels should induce intraflagellar alkalinisation and activate CatSper ion channels. Therefore the combined action of Hv1 and CatSper channels in human spermatozoa can induce elevation of both intracellular pH and Ca²(+) required for sperm activation in the female reproductive tract. Here, we discuss how Hv1 and CatSper channels regulate human sperm physiology and the differences in control of sperm intracellular pH and Ca²(+) between species.

  4. Voltage-gated proton (H(v)1) channels, a singular voltage sensing domain.

    Science.gov (United States)

    Castillo, Karen; Pupo, Amaury; Baez-Nieto, David; Contreras, Gustavo F; Morera, Francisco J; Neely, Alan; Latorre, Ramon; Gonzalez, Carlos

    2015-11-14

    The main role of voltage-gated proton channels (Hv1) is to extrude protons from the intracellular milieu when, mediated by different cellular processes, the H(+) concentration increases. Hv1 are exquisitely selective for protons and their structure is homologous to the voltage sensing domain (VSD) of other voltage-gated ion channels like sodium, potassium, and calcium channels. In clear contrast to the classical voltage-dependent channels, Hv1 lacks a pore domain and thus permeation necessarily occurs through the voltage sensing domain. Hv1 channels are activated by depolarizing voltages, and increases in internal proton concentration. It has been proposed that local conformational changes of the transmembrane segment S4, driven by depolarization, trigger the molecular rearrangements that open Hv1. However, it is still unclear how the electromechanical coupling is achieved between the VSD and the potential pore, allowing the proton flux from the intracellular to the extracellular side. Here we provide a revised view of voltage activation in Hv1 channels, offering a comparative scenario with other voltage sensing channels domains.

  5. Microglial Hv1 proton channel promotes cuprizone-induced demyelination through oxidative damage.

    Science.gov (United States)

    Liu, Junli; Tian, Daishi; Murugan, Madhuvika; Eyo, Ukpong B; Dreyfus, Cheryl F; Wang, Wei; Wu, Long-Jun

    2015-10-01

    NADPH oxidase (NOX)-dependent reactive oxygen species (ROS) production in inflammatory cells including microglia plays an important role in demyelination and free radical-mediated tissue injury in multiple sclerosis (MS). However, the mechanism underlying microglial ROS production and demyelination remains largely unknown. The voltage-gated proton channel, Hv1, is selectively expressed in microglia and is required for NOX-dependent ROS generation in the brain. In the present study, we sought to determine the role of microglial Hv1 proton channels in a mouse model of cuprizone-induced demyelination, a model for MS. Following cuprizone exposure, wild-type mice presented obvious demyelination, decreased myelin basic protein expression, loss of mature oligodendrocytes, and impaired motor coordination in comparison to mice on a normal chow diet. However, mice lacking Hv1 (Hv1(-/-) ) are partially protected from demyelination and motor deficits compared with those in wild-type mice. These rescued phenotypes in Hv1(-/-) mice in cuprizone-induced demyelination is accompanied by reduced ROS production, ameliorated microglial activation, increased oligodendrocyte progenitor cell (NG2) proliferation, and increased number of mature oligodendrocytes. These results demonstrate that the Hv1 proton channel is required for cuprizone-induced microglial oxidative damage and subsequent demyelination. Our study suggests that the microglial Hv1 proton channel is a unique target for controlling NOX-dependent ROS production in the pathogenesis of MS.

  6. The Voltage–gated Proton Channel, Hv1, Enhances Brain Damage from Ischemic Stroke

    OpenAIRE

    Wu, Long–Jun; Wu, Gongxiong; Akhavan Sharif, M. Reza; Baker, Amanda; Jia, Yonghui; H. Fahey, Frederic; Luo, Hongbo; Feener, Edward Paul; Clapham, David Eldon

    2012-01-01

    SUMMARY Phagocytic cell NADPH oxidase (NOX) generates reactive oxygen species (ROS) as part of innate immunity. Unfortunately, ischemia can also induce this pathway and inflict damage on native cells. Here we show that NOX–mediated damage can be inhibited by suppression of the voltage-gated proton channel, Hv1. Hv1 is required for full NOX activity since it compensates for loss of NOX–exported charge. We show that Hv1 is required for NOX–dependent ROS generation in brain microglia in situ and...

  7. The voltage-gated proton channel Hv1 enhances brain damage from ischemic stroke.

    Science.gov (United States)

    Wu, Long-Jun; Wu, Gongxiong; Akhavan Sharif, M Reza; Baker, Amanda; Jia, Yonghui; Fahey, Frederic H; Luo, Hongbo R; Feener, Edward P; Clapham, David E

    2012-03-04

    Phagocytic cell NADPH oxidase (NOX) generates reactive oxygen species (ROS) as part of innate immunity. Unfortunately, ischemia can also induce this pathway and inflict damage on native cells. The voltage-gated proton channel Hv1 enables NOX function by compensating cellular loss of electrons with protons. Accordingly, we investigated whether NOX-mediated brain damage in stroke can be inhibited by suppression of Hv1. We found that mouse and human brain microglia, but not neurons or astrocytes, expressed large Hv1-mediated currents. Hv1 was required for NOX-dependent ROS generation in brain microglia in situ and in vivo. Mice lacking Hv1 were protected from NOX-mediated neuronal death and brain damage 24 h after stroke. These results indicate that Hv1-dependent ROS production is responsible for a substantial fraction of brain damage at early time points after ischemic stroke and provide a rationale for Hv1 as a therapeutic target for the treatment of ischemic stroke.

  8. The voltage-gated proton channel Hv1/VSOP inhibits neutrophil granule release.

    Science.gov (United States)

    Okochi, Yoshifumi; Aratani, Yasuaki; Adissu, Hibret A; Miyawaki, Nana; Sasaki, Mari; Suzuki, Kazuo; Okamura, Yasushi

    2016-01-01

    Neutrophil granule exocytosis is crucial for host defense and inflammation. Neutrophils contain 4 types of granules, the exocytotic release of which is differentially regulated. This exocytosis is known to be driven by diverse mediators, including calcium and nucleotides, but the precise molecular mechanism remains largely unknown. We show in the present study that voltage-gated proton (Hv) channels are necessary for the proper release of azurophilic granules in neutrophils. On activation of NADPH oxidase by PMA and IgG, neutrophils derived from Hvcn1 gene knockout mouse exhibited greater secretion of MPO and elastase than WT cells. In contrast, release of LTF enriched in specific granules was not enhanced in these cells. The excess release of azurophilic granules in Hv1/VSOP-deficient neutrophils was suppressed by inhibiting NADPH oxidase activity and, in part, by valinomycin, a potassium ionophore. In addition, Hv1/VSOP-deficient mice exhibited more severe lung inflammation after intranasal Candida albicans infection than WT mice. These findings suggest that the Hv channel acts to specifically dampen the release of azurophilic granules through, in part, the suppression of increased positive charges at the plasma membrane accompanied by the activation of NADPH oxidase in neutrophils. © Society for Leukocyte Biology.

  9. A specialized molecular motion opens the Hv1 voltage-gated proton channel.

    Science.gov (United States)

    Mony, Laetitia; Berger, Thomas K; Isacoff, Ehud Y

    2015-04-01

    The Hv1 proton channel is unique among voltage-gated channels for containing the pore and gate within its voltage-sensing domain. Pore opening has been proposed to include assembly of the selectivity filter between an arginine (R3) of segment S4 and an aspartate (D1) of segment S1. We determined whether gating involves motion of S1, using Ciona intestinalis Hv1. We found that channel opening is concomitant with solution access to the pore-lining face of S1, from the cytoplasm to deep inside the pore. Voltage- and patch-clamp fluorometry showed that this involves a motion of S1 relative to its surroundings. S1 motion and the S4 motion that precedes it are each influenced by residues on the other helix, thus suggesting a dynamic interaction between S1 and S4. Our findings suggest that the S1 of Hv1 has specialized to function as part of the channel's gate.

  10. VSOP/Hv1 proton channels sustain calcium entry, neutrophil migration, and superoxide production by limiting cell depolarization and acidification

    National Research Council Canada - National Science Library

    El Chemaly, Antoun; Okochi, Yoshifumi; Sasaki, Mari; Arnaudeau, Serge; Okamura, Yasushi; Demaurex, Nicolas

    2010-01-01

    .... Voltage-gated proton channels (voltage-sensing domain only protein [VSOP]/Hv1) are required for high-level superoxide production by phagocytes, but the mechanism of this effect is not established...

  11. Selectivity Mechanism of the Voltage-gated Proton Channel, HV1

    Science.gov (United States)

    Dudev, Todor; Musset, Boris; Morgan, Deri; Cherny, Vladimir V.; Smith, Susan M. E.; Mazmanian, Karine; Decoursey, Thomas E.; Lim, Carmay

    2015-05-01

    Voltage-gated proton channels, HV1, trigger bioluminescence in dinoflagellates, enable calcification in coccolithophores, and play multifarious roles in human health. Because the proton concentration is minuscule, exquisite selectivity for protons over other ions is critical to HV1 function. The selectivity of the open HV1 channel requires an aspartate near an arginine in the selectivity filter (SF), a narrow region that dictates proton selectivity, but the mechanism of proton selectivity is unknown. Here we use a reduced quantum model to elucidate how the Asp-Arg SF selects protons but excludes other ions. Attached to a ring scaffold, the Asp and Arg side chains formed bidentate hydrogen bonds that occlude the pore. Introducing H3O+ protonated the SF, breaking the Asp-Arg linkage and opening the conduction pathway, whereas Na+ or Cl- was trapped by the SF residue of opposite charge, leaving the linkage intact, thus preventing permeation. An Asp-Lys SF behaved like the Asp-Arg one and was experimentally verified to be proton-selective, as predicted. Hence, interacting acidic and basic residues form favorable AspH0-H2O0-Arg+ interactions with hydronium but unfavorable Asp--X-/X+-Arg+ interactions with anions/cations. This proposed mechanism may apply to other proton-selective molecules engaged in bioenergetics, homeostasis, and signaling.

  12. The voltage-gated proton channel Hv1 is expressed in pancreatic islet β-cells and regulates insulin secretion

    Energy Technology Data Exchange (ETDEWEB)

    Zhao, Qing [Department of Biophysics, School of Physics Science, The Key Laboratory of Bioactive Materials, Ministry of Education, Nankai University, Tianjin 300071 (China); Che, Yongzhe [School of Medicine, Nankai University, Tianjin 300071 (China); Li, Qiang; Zhang, Shangrong [Department of Biophysics, School of Physics Science, The Key Laboratory of Bioactive Materials, Ministry of Education, Nankai University, Tianjin 300071 (China); Gao, Ying-Tang [Key Laboratory of Artificial Cell, Third Central Clinical College of Tianjin Medical University, Tianjin 300170 (China); Wang, Yifan; Wang, Xudong; Xi, Wang; Zuo, Weiyan [Department of Biophysics, School of Physics Science, The Key Laboratory of Bioactive Materials, Ministry of Education, Nankai University, Tianjin 300071 (China); Li, Shu Jie, E-mail: shujieli@nankai.edu.cn [Department of Biophysics, School of Physics Science, The Key Laboratory of Bioactive Materials, Ministry of Education, Nankai University, Tianjin 300071 (China)

    2015-12-25

    The voltage-gated proton channel Hv1 is a potent acid extruder that participates in the extrusion of the intracellular acid. Here, we showed for the first time, Hv1 is highly expressed in mouse and human pancreatic islet β-cells, as well as β-cell lines. Imaging studies demonstrated that Hv1 resides in insulin-containing granules in β-cells. Knockdown of Hv1 with RNA interference significantly reduces glucose- and K{sup +}-induced insulin secretion in isolated islets and INS-1 (832/13) β-cells and has an impairment on glucose- and K{sup +}-induced intracellular Ca{sup 2+} homeostasis. Our data demonstrated that the expression of Hv1 in pancreatic islet β-cells regulates insulin secretion through regulating Ca{sup 2+} homeostasis.

  13. Human voltage-gated proton channel hv1: a new potential biomarker for diagnosis and prognosis of colorectal cancer.

    Directory of Open Access Journals (Sweden)

    Yifan Wang

    Full Text Available Solid tumors exist in a hypoxic microenvironment, and possess high-glycolytic metabolites. To avoid the acidosis, tumor cells must exhibit a dynamic cytosolic pH regulation mechanism(s. The voltage-gated proton channel Hv1 mediates NADPH oxidase function by compensating cellular loss of electrons with protons. Here, we showed for the first time, that Hv1 expression is increased in colorectal tumor tissues and cell lines, associated with poor prognosis. Immunohistochemistry showed that Hv1 is strongly expressed in adenocarcinomas but not or lowly expressed in normal colorectal or hyperplastic polyps. Hv1 expression in colorectal cancer is significantly associated with the tumor size, tumor classification, lymph node status, clinical stage and p53 status. High Hv1 expression is associated significantly with shorter overall and recurrence-free survival. Furthermore, real-time RT-PCR and immunocytochemistry showed that Hv1 is highly expressed in colorectal cancer cell lines, SW620, HT29, LS174T and Colo205, but not in SW480. Inhibitions of Hv1 expression and activity in the highly metastatic SW620 cells by small interfering RNA (siRNA and Zn(2+ respectively, markedly decrease the cell invasion and migration, restraint proton extrusion and the intracellular pH recovery. Our results suggest that Hv1 may be used as a potential biomarker for diagnosis and prognosis of colorectal carcinoma, and a potential target for anticancer drugs in colorectal cancer therapy.

  14. The barley anion channel, HvALMT1, has multiple roles in guard cell physiology and grain metabolism.

    Science.gov (United States)

    Xu, Muyun; Gruber, Benjamin D; Delhaize, Emmanuel; White, Rosemary G; James, Richard A; You, Jiangfeng; Yang, Zhenming; Ryan, Peter R

    2015-01-01

    The barley (Hordeum vulgare) gene HvALMT1 encodes an anion channel in guard cells and in certain root tissues indicating that it may perform multiple roles. The protein localizes to the plasma membrane and facilitates malate efflux from cells when constitutively expressed in barley plants and Xenopus oocytes. This study investigated the function of HvALMT1 further by identifying its tissue-specific expression and by generating and characterizing RNAi lines with reduced HvALMT1 expression. We show that transgenic plants with 18-30% of wild-type HvALMT1 expression had impaired guard cell function. They maintained higher stomatal conductance in low light intensity and lost water more rapidly from excised leaves than the null segregant control plants. Tissue-specific expression of HvALMT1 was investigated in developing grain and during germination using transgenic barley lines expressing the green fluorescent protein (GFP) with the HvALMT1 promoter. We found that HvALMT1 is expressed in the nucellar projection, the aleurone layer and the scutellum of developing barley grain. Malate release measured from isolated aleurone layers prepared from imbibed grain was significantly lower in the RNAi barley plants compared with control plants. These data provide molecular and physiological evidence that HvALMT1 functions in guard cells, in grain development and during germination. We propose that HvALMT1 releases malate and perhaps other anions from guard cells to promote stomatal closure. The likely roles of HvALMT1 during seed development and grain germination are also discussed.

  15. Evidence for functional diversity between the voltage-gated proton channel Hv1 and its closest related protein HVRP1.

    Directory of Open Access Journals (Sweden)

    Iris H Kim

    Full Text Available The Hv1 channel and voltage-sensitive phosphatases share with voltage-gated sodium, potassium, and calcium channels the ability to detect changes in membrane potential through voltage-sensing domains (VSDs. However, they lack the pore domain typical of these other channels. NaV, KV, and CaV proteins can be found in neurons and muscles, where they play important roles in electrical excitability. In contrast, VSD-containing proteins lacking a pore domain are found in non-excitable cells and are not involved in neuronal signaling. Here, we report the identification of HVRP1, a protein related to the Hv1 channel (from which the name Hv1 Related Protein 1 is derived, which we find to be expressed primarily in the central nervous system, and particularly in the cerebellum. Within the cerebellar tissue, HVRP1 is specifically expressed in granule neurons, as determined by in situ hybridization and immunohistochemistry. Analysis of subcellular distribution via electron microscopy and immunogold labeling reveals that the protein localizes on the post-synaptic side of contacts between glutamatergic mossy fibers and the granule cells. We also find that, despite the similarities in amino acid sequence and structural organization between Hv1 and HVRP1, the two proteins have distinct functional properties. The high conservation of HVRP1 in vertebrates and its cellular and subcellular localizations suggest an important function in the nervous system.

  16. Linking stomatal traits and expression of slow anion channel genes HvSLAH1 and HvSLAC1 with grain yield for increasing salinity tolerance in barley.

    Science.gov (United States)

    Liu, Xiaohui; Mak, Michelle; Babla, Mohammad; Wang, Feifei; Chen, Guang; Veljanoski, Filip; Wang, Gang; Shabala, Sergey; Zhou, Meixue; Chen, Zhong-Hua

    2014-01-01

    Soil salinity is an environmental and agricultural problem in many parts of the world. One of the keys to breeding barley for adaptation to salinity lies in a better understanding of the genetic control of stomatal regulation. We have employed a range of physiological (stomata assay, gas exchange, phylogenetic analysis, QTL analysis), and molecular techniques (RT-PCR and qPCR) to investigate stomatal behavior and genotypic variation in barley cultivars and a genetic population in four experimental trials. A set of relatively efficient and reliable methods were developed for the characterization of stomatal behavior of a large number of varieties and genetic lines. Furthermore, we found a large genetic variation of gas exchange and stomatal traits in barley in response to salinity stress. Salt-tolerant cultivar CM72 showed significantly larger stomatal aperture under 200 mM NaCl treatment than that of salt-sensitive cultivar Gairdner. Stomatal traits such as aperture width/length were found to significantly correlate with grain yield under salt treatment. Phenotypic characterization and QTL analysis of a segregating double haploid population of the CM72/Gairdner resulted in the identification of significant stomatal traits-related QTLs for salt tolerance. Moreover, expression analysis of the slow anion channel genes HvSLAH1 and HvSLAC1 demonstrated that their up-regulation is linked to higher barley grain yield in the field.

  17. Linking stomatal traits and expression of slow anion channel genes HvSLAH1 2 HvSLAC1 with grain yield for increasing salinity tolerance in barley

    Directory of Open Access Journals (Sweden)

    Xiaohui eLiu

    2014-11-01

    Full Text Available Soil salinity is an environmental and agricultural problem in many parts of the world. One of the keys to breeding barley for adaptation to salinity lies in a better understanding of the genetic control of stomatal regulation. We have employed a range of physiological and molecular techniques (stomata assay, gas exchange, phylogenetic analysis, QTL analysis, and gene expression to investigate stomatal behaviour and genotypic variation in barley cultivars and a genetic population in four experimental trials. A set of relatively efficient and reliable methods were developed for the characterisation of stomatal behaviour of large numbers of varieties and genetic lines. Furthermore, we have found a large genetic variation of gas exchange and stomatal traits in barley in response to salinity stress. Salt-tolerant CM72 showed significantly larger stomatal aperture in 200 mM NaCl treatment than that of salt-sensitive Gairdner. Stomatal traits such as aperture width/length were found to significantly correlate with grain yield in salt treatment. Phenotypic characterisation and QTL analysis of a segregating double haploid population of the CM72/Gairdner resulted in the identification of significant stomatal traits-related QTLs for salt tolerance. Moreover, expression analysis of the slow anion channel genes HvSLAH1 and HvSLAC1 demonstrated that their up-regulation is linked to high barley grain yield in the field.

  18. Unconventional role of voltage-gated proton channels (VSOP/Hv1) in regulation of microglial ROS production.

    Science.gov (United States)

    Kawai, Takafumi; Okochi, Yoshifumi; Ozaki, Tomohiko; Imura, Yoshio; Koizumi, Schuichi; Yamazaki, Maya; Abe, Manabu; Sakimura, Kenji; Yamashita, Toshihide; Okamura, Yasushi

    2017-09-01

    It has been established that voltage-gated proton channels (VSOP/Hv1), encoded by Hvcn1, support reactive oxygen species (ROS) production in phagocytic activities of neutrophils (El Chemaly et al. ) and antibody production in B lymphocytes (Capasso et al. ). VSOP/Hv1 is a potential therapeutic target for brain ischemia, since Hvcn1 deficiency reduces microglial ROS production and protects brain from neuronal damage (Wu et al. ). In the present study, we report that VSOP/Hv1 has paradoxical suppressive role in ROS production in microglia. Extracellular ROS production was lower in neutrophils of Hvcn1(-/-) mice than WT mice as reported. In contrast, it was drastically enhanced in isolated Hvcn1(-/-) microglia as compared with cells from WT mice. Actin dynamics was altered in Hvcn1(-/-) microglia and intracellular distribution of cytosolic NADPH oxidase subunit, p67, was changed. When expression levels of oxidative stress responsive antioxidant genes were compared between WT and Hvcn1(-/-) in cerebral cortex at different ages of animals, they were slightly decreased in Hvcn1(-/-) mice at younger stage (1 day, 5 days, 3 weeks old), but drastically increased at aged stage (6 months old), suggesting that the regulation of microglial ROS production by VSOP/Hv1 is age-dependent. We also performed brain ischemic stroke experiments and found that the neuroprotective effect of VSOP/Hv1deficiency on infarct volume depended on the age of animals. Taken together, regulation of ROS production by VSOP/Hv1 is more complex than previously thought and significance of VSOP/Hv1 in microglial ROS production depends on age. © 2017 International Society for Neurochemistry.

  19. VSOP/Hv1 proton channels sustain calcium entry, neutrophil migration, and superoxide production by limiting cell depolarization and acidification.

    Science.gov (United States)

    El Chemaly, Antoun; Okochi, Yoshifumi; Sasaki, Mari; Arnaudeau, Serge; Okamura, Yasushi; Demaurex, Nicolas

    2010-01-18

    Neutrophils kill microbes with reactive oxygen species generated by the NADPH oxidase, an enzyme which moves electrons across membranes. Voltage-gated proton channels (voltage-sensing domain only protein [VSOP]/Hv1) are required for high-level superoxide production by phagocytes, but the mechanism of this effect is not established. We show that neutrophils from VSOP/Hv1-/- mice lack proton currents but have normal electron currents, indicating that these cells have a fully functional oxidase that cannot conduct protons. VSOP/Hv1-/- neutrophils had a more acidic cytosol, were more depolarized, and produced less superoxide and hydrogen peroxide than neutrophils from wild-type mice. Hydrogen peroxide production was rescued by providing an artificial conductance with gramicidin. Loss of VSOP/Hv1 also aborted calcium responses to chemoattractants, increased neutrophil spreading, and decreased neutrophil migration. The migration defect was restored by the addition of a calcium ionophore. Our findings indicate that proton channels extrude the acid and compensate the charge generated by the oxidase, thereby sustaining calcium entry signals that control the adhesion and motility of neutrophils. Loss of proton channels thus aborts superoxide production and causes a severe signaling defect in neutrophils.

  20. Specific expression of the human voltage-gated proton channel Hv1 in highly metastatic breast cancer cells, promotes tumor progression and metastasis

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Yifan [The Key Laboratory of Bioactive Materials, Ministry of Education, School of Physics Science, Nankai University, Tianjin 300071 (China); Li, Shu Jie, E-mail: shujieli@nankai.edu.cn [The Key Laboratory of Bioactive Materials, Ministry of Education, School of Physics Science, Nankai University, Tianjin 300071 (China); Pan, Juncheng [The Key Laboratory of Bioactive Materials, Ministry of Education, School of Physics Science, Nankai University, Tianjin 300071 (China); Che, Yongzhe, E-mail: cheli@nankai.edu.cn [The Key Laboratory of Bioactive Materials, Ministry of Education, School of Medicine, Nankai University, Tianjin 300071 (China); Yin, Jian [Cancer Institute and Hospital, Tianjin Medical University, Tianjin 300060 (China); Zhao, Qing [The Key Laboratory of Bioactive Materials, Ministry of Education, School of Physics Science, Nankai University, Tianjin 300071 (China)

    2011-08-26

    Highlights: {yields} Hv1 is specifically expressed in highly metastatic human breast tumor tissues. {yields} Hv1 regulates breast cancer cytosolic pH. {yields} Hv1 acidifies extracellular milieu. {yields} Hv1 exacerbates the migratory ability of metastatic cells. -- Abstract: The newly discovered human voltage-gated proton channel Hv1 is essential for proton transfer, which contains a voltage sensor domain (VSD) without a pore domain. We report here for the first time that Hv1 is specifically expressed in the highly metastatic human breast tumor tissues, but not in poorly metastatic breast cancer tissues, detected by immunohistochemistry. Meanwhile, real-time RT-PCR and immunocytochemistry showed that the expression levels of Hv1 have significant differences among breast cancer cell lines, MCF-7, MDA-MB-231, MDA-MB-468, MDA-MB-453, T-47D and SK-BR-3, in which Hv1 is expressed at a high level in highly metastatic human breast cancer cell line MDA-MB-231, but at a very low level in poorly metastatic human breast cancer cell line MCF-7. Inhibition of Hv1 expression in the highly metastatic MDA-MB-231 cells by small interfering RNA (siRNA) significantly decreases the invasion and migration of the cells. The intracellular pH of MDA-MB-231 cells down-regulated Hv1 expression by siRNA is obviously decreased compared with MDA-MB-231 with the scrambled siRNA. The expression of matrix metalloproteinase-2 and gelatinase activity in MDA-MB-231 cells suppressed Hv1 by siRNA were reduced. Our results strongly suggest that Hv1 regulates breast cancer intracellular pH and exacerbates the migratory ability of metastatic cells.

  1. Deficiency in the voltage-gated proton channel Hv1 increases M2 polarization of microglia and attenuates brain damage from photothrombotic ischemic stroke.

    Science.gov (United States)

    Tian, Dai-Shi; Li, Chun-Yu; Qin, Chuan; Murugan, Madhuvika; Wu, Long-Jun; Liu, Jun-Li

    2016-10-01

    Microglia become activated during cerebral ischemia and exert pro-inflammatory or anti-inflammatory role dependent of microglial polarization. NADPH oxidase (NOX)-dependent reactive oxygen species (ROS) production in microglia plays an important role in neuronal damage after ischemic stroke. Recently, NOX and ROS are consistently reported to participate in the microglial activation and polarization; NOX2 inhibition or suppression of ROS production are shown to shift the microglial polarization from M1 toward M2 state after stroke. The voltage-gated proton channel, Hv1, is selectively expressed in microglia and is required for NOX-dependent ROS generation in the brain. However, the effect of Hv1 proton channel on microglial M1/M2 polarization state after cerebral ischemia remains unknown. In this study, we investigated the role of microglial Hv1 proton channel in modulating microglial M1/M2 polarization during the pathogenesis of ischemic cerebral injury using a mouse model of photothrombosis. Following photothrombotic ischemic stroke, wild-type mice presented obvious brain infarct, neuronal damage, and impaired motor coordination. However, mice lacking Hv1 (Hv1(-/-)) were partially protected from brain damage and motor deficits compared to wild-type mice. These rescued phenotypes in Hv1(-/-) mice in ischemic stroke is accompanied by reduced ROS production, shifted the microglial polarization from M1 to M2 state. Hv1 deficiency was also found to shift the M1/M2 polarization in primary cultured microglia. Our study suggests that the microglial Hv1 proton channel is a unique target for modulation of microglial M1/M2 polarization in the pathogenesis of ischemic stroke. The voltage-gated proton channel, Hv1, is selectively expressed in microglia and is required for NOX-dependent generation of reactive oxygen species (ROS) in the brain. ROS participate in microglial activation and polarization. However, the effect of Hv1 on microglial M1/M2 polarization state after

  2. The cytoplasmic coiled-coil mediates cooperative gating temperature sensitivity in the voltage-gated H(+) channel Hv1.

    Science.gov (United States)

    Fujiwara, Yuichiro; Kurokawa, Tatsuki; Takeshita, Kohei; Kobayashi, Megumi; Okochi, Yoshifumi; Nakagawa, Atsushi; Okamura, Yasushi

    2012-05-08

    Hv1/VSOP is a dimeric voltage-gated H(+) channel in which the gating of one subunit is reportedly coupled to that of the other subunit within the dimer. The molecular basis for dimer formation and intersubunit coupling, however, remains unknown. Here we show that the carboxy terminus ends downstream of the S4 voltage-sensor helix twist in a dimer coiled-coil architecture, which mediates cooperative gating. We also show that the temperature-dependent activation of H(+) current through Hv1/VSOP is regulated by thermostability of the coiled-coil domain, and that this regulation is altered by mutation of the linker between S4 and the coiled-coil. Cooperative gating within the dimer is also dependent on the linker structure, which circular dichroism spectrum analysis suggests is α-helical. Our results indicate that the cytoplasmic coiled-coil strands form continuous α-helices with S4 and mediate cooperative gating to adjust the range of temperatures over which Hv1/VSOP operates.

  3. Voltage-dependent BK and Hv1 channels expressed in non-excitable tissues: New therapeutics opportunities as targets in human diseases.

    Science.gov (United States)

    Morera, Francisco J; Saravia, Julia; Pontigo, Juan Pablo; Vargas-Chacoff, Luis; Contreras, Gustavo F; Pupo, Amaury; Lorenzo, Yenisleidy; Castillo, Karen; Tilegenova, Cholpon; Cuello, Luis G; Gonzalez, Carlos

    2015-11-01

    Voltage-gated ion channels are the molecular determinants of cellular excitability. This group of ion channels is one of the most important pharmacological targets in excitable tissues such as nervous system, cardiac and skeletal muscle. Moreover, voltage-gated ion channels are expressed in non-excitable cells, where they mediate key cellular functions through intracellular biochemical mechanisms rather than rapid electrical signaling. This review aims at illustrating the pharmacological impact of these ion channels, highlighting in particular the structural details and physiological functions of two of them - the high conductance voltage- and Ca(2+)-gated K(+) (BK) channels and voltage-gated proton (Hv1) channels- in non-excitable cells. BK channels have been implicated in a variety of physiological processes ranging from regulation of smooth muscle tone to modulation of hormone and neurotransmitter release. Interestingly, BK channels are also involved in modulating K(+) transport in the mammalian kidney and colon epithelium with a potential role in the hyperkalemic phenotype observed in patients with familial hyperkalemic hypertension type 2, and in the pathophysiology of hypertension. In addition, BK channels are responsible for resting and stimulated Ca(2+)-activated K(+) secretion in the distal colon. Hv1 channels have been detected in many cell types, including macrophages, blood cells, lung epithelia, skeletal muscle and microglia. These channels have a central role in the phagocytic system. In macrophages, Hv1 channels participate in the generation of reactive oxygen species in the respiratory burst during the process of phagocytosis. Copyright © 2015 Elsevier Ltd. All rights reserved.

  4. The potential role of cobalt ions released from metal prosthesis on the inhibition of Hv1 proton channels and the decrease in Staphyloccocus epidermidis killing by human neutrophils.

    Science.gov (United States)

    Daou, Samira; El Chemaly, Antoun; Christofilopoulos, Panayiotis; Bernard, Louis; Hoffmeyer, Pierre; Demaurex, Nicolas

    2011-03-01

    Infection by Staphylococcus epidermidis is a devastating complication of metal-on-metal (MM) total hip arthroplasty (THA). Neutrophils are the first line of defense against infection, and these innate immune cells are potentially exposed to Co(2+) ions released in the peri-prosthetic tissue by the wear of MM THA. The toxicity of Co(2+) is still debated, but Co(2+) is a potential inhibitor of the Hv1 proton channel that sustains the production of superoxide by neutrophils. In this study, we show that the Co(2+) concentration in peri-prosthetic tissue from patients with MM THA averages 53 μM and that such high concentrations of Co(2+) alter the antibacterial activity of human neutrophils in vitro by inhibiting Hv1 proton channels. We show that submillimolar concentrations of Co(2+) inhibit proton currents, impair the extrusion of cytosolic acid, and decrease the production of superoxide in human neutrophils. As a result, Co(2+) reduces the ability of human neutrophils to kill two strains of Staphyloccocus epidermidis by up to 7-fold at the maximal concentration tested of 100 μM Co(2+). By inhibiting proton channels, the Co(2+) ions released by metal prostheses might therefore promote bacterial infections in patients with metal-on-metal total hip arthroplasty.

  5. Power Adaptation Based on Truncated Channel Inversion for Hybrid FSO/RF Transmission With Adaptive Combining

    KAUST Repository

    Rakia, Tamer

    2015-07-23

    Hybrid free-space optical (FSO)/radio-frequency (RF) systems have emerged as a promising solution for high-data-rate wireless communications. In this paper, we consider power adaptation strategies based on truncated channel inversion for the hybrid FSO/RF system employing adaptive combining. Specifically, we adaptively set the RF link transmission power when FSO link quality is unacceptable to ensure constant combined signal-to-noise ratio (SNR) at the receiver. Two adaptation strategies are proposed. One strategy depends on the received RF SNR, whereas the other one depends on the combined SNR of both links. Analytical expressions for the outage probability of the hybrid system with and without power adaptation are obtained. Numerical examples show that the hybrid FSO/RF system with power adaptation achieves a considerable outage performance improvement over the conventional system.

  6. On stochastic geometry modeling of cellular uplink transmission with truncated channel inversion power control

    KAUST Repository

    Elsawy, Hesham

    2014-08-01

    Using stochastic geometry, we develop a tractable uplink modeling paradigm for outage probability and spectral efficiency in both single and multi-tier cellular wireless networks. The analysis accounts for per user equipment (UE) power control as well as the maximum power limitations for UEs. More specifically, for interference mitigation and robust uplink communication, each UE is required to control its transmit power such that the average received signal power at its serving base station (BS) is equal to a certain threshold ρo. Due to the limited transmit power, the UEs employ a truncated channel inversion power control policy with a cutoff threshold of ρo. We show that there exists a transfer point in the uplink system performance that depends on the following tuple: BS intensity λ, maximum transmit power of UEs Pu, and ρo. That is, when Pu is a tight operational constraint with respect to (w.r.t.) λ and ρo, the uplink outage probability and spectral efficiency highly depend on the values of λ and ρo. In this case, there exists an optimal cutoff threshold ρ*o, which depends on the system parameters, that minimizes the outage probability. On the other hand, when Pu is not a binding operational constraint w.r.t. λ and ρo, the uplink outage probability and spectral efficiency become independent of λ and ρo. We obtain approximate yet accurate simple expressions for outage probability and spectral efficiency, which reduce to closed forms in some special cases. © 2002-2012 IEEE.

  7. Cross-layer designed adaptive modulation algorithm with packet combining and truncated ARQ over MIMO Nakagami fading channels

    KAUST Repository

    Aniba, Ghassane

    2011-04-01

    This paper presents an optimal adaptive modulation (AM) algorithm designed using a cross-layer approach which combines truncated automatic repeat request (ARQ) protocol and packet combining. Transmissions are performed over multiple-input multiple-output (MIMO) Nakagami fading channels, and retransmitted packets are not necessarily modulated using the same modulation format as in the initial transmission. Compared to traditional approach, cross-layer design based on the coupling across the physical and link layers, has proven to yield better performance in wireless communications. However, there is a lack for the performance analysis and evaluation of such design when the ARQ protocol is used in conjunction with packet combining. Indeed, previous works addressed the link layer performance of AM with truncated ARQ but without packet combining. In addition, previously proposed AM algorithms are not optimal and can provide poor performance when packet combining is implemented. Herein, we first show that the packet loss rate (PLR) resulting from the combining of packets modulated with different constellations can be well approximated by an exponential function. This model is then used in the design of an optimal AM algorithm for systems employing packet combining, truncated ARQ and MIMO antenna configurations, considering transmission over Nakagami fading channels. Numerical results are provided for operation with or without packet combining, and show the enhanced performance and efficiency of the proposed algorithm in comparison with existing ones. © 2011 IEEE.

  8. 人源电压门控质子通道对乳腺癌细胞迁移与侵袭的影响*%Effects of voltage-gated proton channel(Hv1)on the migration and invasion of breast cancer cells

    Institute of Scientific and Technical Information of China (English)

    王雅蕾; 张尚荣; 王一凡; 孙保存; 李树杰

    2013-01-01

    目的:明确人源电压门控质子通道蛋白(human voltage-gated proton channel 1,Hv1)对乳腺癌细胞迁移及侵袭能力的影响。方法:检测Hv1在不同转移能力的人乳腺癌细胞系中的表达,利用小RNA干扰(siRNA)技术下调Hv1在乳腺癌MDA-MB-231细胞中的表达,通过细胞划痕和体外侵袭实验方法,观察Hv1对乳腺癌细胞迁移和侵袭的影响并初步探讨相关分子机制。结果:Hv1在高转移的乳腺癌细胞MDA-MB-231中表达较高,Hv1基因的siRNA干扰片段能够抑制Hv1基因及蛋白的表达;细胞划痕和体外侵袭实验表明Hv1降表达的MDA-MB-231细胞迁移和侵袭能力较弱;明胶酶谱和免疫印迹实验证明下调Hv1基因在MDA-MB-231细胞中的表达明显抑制了MMP-2的活性。结论:Hv1能够促进乳腺癌细胞迁移及侵袭。%Objective:To clarify the effect of voltage-gated proton channel 1 (Hv1) on the migration and invasion of breast cancer cells. Methods:The protein expression of Hv1 was detected in human breast cancer cell lines with different metastatic abilities. SiRNA technique was used to down-regulate the expression of Hvl in breast cancer MDA-MB-231 cells. Scratch and matrigel invasion methods were used to observe the effect of Hvl on the migration and invasion of breast cancer cells, and the relevant molecular mechanism was explored. Results:Hv1 was highly expressed in the highly metastatic breast cancer cell line MDA-MB-231. Hvl was more highly expressed in MDA-MB-231 cells with higher metastatic ability. The SiRNA sequence target at Hvl inhibited Hvl expression. Scratch and matrigel invasion experiments showed that the migration and invasion of MDA-MB-231 cells were significantly attenuated when Hv1 was knocked down by siRNA targeting Hv1. Zymography experiment on matrix metalloproteinase indicated that the enzyme activities of MMP-2 markedly decreased. Conclusion:Hv1 promoted the migration and invasion ability of breast

  9. Mitochondrial DNA HV1 and HV2 variation in Danes

    DEFF Research Database (Denmark)

    Mikkelsen, Martin; Sørensen, Erik; Rasmussen, Erik Michael;

    2010-01-01

    Sequences from the two hypervariable regions (HV1 and HV2) of the control region of the mitochondrial DNA were obtained from a total of 201 Danes and five individuals who later were recognized to be of non-West European origin. Two fractions of each region were amplified separately and sequenced ...

  10. Sequencing of mitochondrial HV1 and HV2 DNA with length heteroplasmy

    DEFF Research Database (Denmark)

    Rasmussen, E. Michael; Eriksen, Birthe; Larsen, Hans Jakob

    2003-01-01

    This study presents a fast method for sequencing the poly C/G regions in HV1 and HV2 in the mitochondrial DNA (mtDNA)......This study presents a fast method for sequencing the poly C/G regions in HV1 and HV2 in the mitochondrial DNA (mtDNA)...

  11. HvALMT1 from barley is involved in the transport of organic anions.

    Science.gov (United States)

    Gruber, Benjamin D; Ryan, Peter R; Richardson, Alan E; Tyerman, Stephen D; Ramesh, Sunita; Hebb, Diane M; Howitt, Susan M; Delhaize, Emmanuel

    2010-03-01

    Members of the ALMT gene family contribute to the Al(3+) resistance of several plant species by facilitating malate efflux from root cells. The first member of this family to be cloned and characterized, TaALMT1, is responsible for most of the natural variation of Al(3+) resistance in wheat. The current study describes the isolation and characterization of HvALMT1, the barley gene with the greatest sequence similarity to TaALMT1. HvALMT1 is located on chromosome 2H which has not been associated with Al(3+) resistance in barley. The relatively low levels of HvALMT1 expression detected in root and shoot tissues were independent of external aluminium or phosphorus supply. Transgenic barley plants transformed with the HvALMT1 promoter fused to the green fluorescent protein (GFP) indicated that expression of HvALMT1 was relatively high in stomatal guard cells and in root tissues containing expanding cells. GFP fused to the C-terminus of the full HvALMT1 protein localized to the plasma membrane and motile vesicles within the cytoplasm. HvALMT1 conferred both inward and outward currents when expressed in Xenopus laevis oocytes that were bathed in a range of anions including malate. Both malate uptake and efflux were confirmed in oocyte assays using [(14)C]malate as a radiotracer. It is suggested that HvALMT1 functions as an anion channel to facilitate organic anion transport in stomatal function and expanding cells.

  12. (e)-operations and Hv-fields

    Institute of Scientific and Technical Information of China (English)

    Thomas VOUGIOUKLIS

    2008-01-01

    The hyperoperations,called theta-operations (e),are motivated from the usual property,which the derivative has on the derivation of a product of functions.Using any map on a set,one can define(e) -operatious.In this paper,we continue our study on the(e) -operations on groupoids,rings,fields and vector spaces or on the corresponding hyperstructures.Using(e) -operations one obtains,mainly,Hv-structures,which form the largest class of the hyperstructures.For representation theory of hyperstructures,by hypermatrices,one needs special Hv-rings or Hv-fields,so these hyperstructures can be used.Moreover,we study the relation of these(e)-structures with other classes of hyperstructures,especially with the Hy-structures.

  13. Prokaryotic expression of a truncated form of bovine herpesvirus 1 glycoprotein E (gE and its use in an ELISA for gE antibodies

    Directory of Open Access Journals (Sweden)

    Stephan A.M. Oliveira

    2013-01-01

    Full Text Available This article describes the expression of a truncated form of bovine herpesvirus 1 (BoHV-1 glycoprotein E (gE for use as immunodiagnostic reagent. A 651 nucleotide fragment corresponding to the amino-terminal third (217 amino acids of BoHV-1 gE - that shares a high identity with the homologous BoHV-5 counterpart - was cloned as a 6×His-tag fusion protein in an Escherichia coli expression vector. A soluble protein of approximately 25 kDa purified from lysates of transformed E. coli was recognized in Western blot (WB by anti-6xHis-tag and anti-BoHV-1 gE monoclonal antibodies. In addition, the recombinant protein was specifically recognized in WB by antibodies present in the sera of cattle seropositive to BoHV-1 and BoHV-5. An indirect ELISA using the expressed protein as coating antigen performed comparably to a commercial anti-gE ELISA and was able to differentiate serologically calves vaccinated with a gE-deleted BoHV-5 strain from calves infected with BoHV-1. Thus, the truncated gE may be useful for serological tests designed to differentiate BoHV-1/BoHV-5 infected animals from those vaccinated with gE-negative marker vaccines.

  14. Truncations of random unitary matrices

    CERN Document Server

    Zyczkowski, K; Zyczkowski, Karol; Sommers, Hans-Juergen

    1999-01-01

    We analyze properties of non-hermitian matrices of size M constructed as square submatrices of unitary (orthogonal) random matrices of size N>M, distributed according to the Haar measure. In this way we define ensembles of random matrices and study the statistical properties of the spectrum located inside the unit circle. In the limit of large matrices, this ensemble is characterized by the ratio M/N. For the truncated CUE we derive analytically the joint density of eigenvalues from which easily all correlation functions are obtained. For N-M fixed and N--> infinity the universal resonance-width distribution with N-M open channels is recovered.

  15. The Variability Of RSG : HV2576

    Science.gov (United States)

    Yang, Ming; Jiang, B. W.

    2008-10-01

    The Harvard Variable HV2576, as a red supergiant in the Large Magallanic Cloud, has a complex light variation, which is not explained well. The existing one-period non-linear pulsation model deviated clearly from its light curve. We tried to fit the light curve by a superposition of several harmonic pulsations. By using the PDM, PERIOD04 and SparSpec codes to analyze the light variation, two periods with 525 and 261 days are well established. Furthermore, the 261-day period is found to change according to the wavelet analysis. In addition, the noise obeying the 1/f law. Based on all these facts, we suggest that the light variation of HV2576 may be due to huge convection cells that interplay with oscillation or the third very long period.

  16. Herpesvirus bovino 4 (BoHV-4)

    OpenAIRE

    Krüger,Ernesto Renato

    2012-01-01

    Resumo: BoHV-4 é membro da sub-família Gammaherpesvirinae, gênero Rhadinovirus e está associado a diversas manifestações clínicas, em que estudos demonstram uma forte correlação entre infecção por este vírus com metrite pós-parto e aborto em bovinos. Objetivos: este trabalho teve por propósito caracterizar uma amostra viral isolada a partir de secreção uterina de fêmea de bovino e desenvolver técnica de ensaio imunoenzimático - ELISA indireto - para detecção de anticorpos específicos ao BoHV-...

  17. The CMS ECAL Barrel HV system

    CERN Document Server

    Bartoloni, Alessandro

    2012-01-01

    The CMS electro-magnetic calorimeter comprises 75848 scintillating lead tungstate crystals. 61200 crystals are contained in the ECAL Barrel section and these are readout by avalanche photodiodes (APD) with internal gain. The APD gain strongly depends on the bias voltage that, for a gain G=50, is around 400 V. In order to match the requirements for gain stability, the power supply voltage must be stable to within 0.01\\%. In this talk we describe our experience with the installed Barrel HV power supply system which has been used for data taking at the LHC since 2008.

  18. Multimeric nature of voltage-gated proton channels.

    Science.gov (United States)

    Koch, Hans P; Kurokawa, Tatsuki; Okochi, Yoshifumi; Sasaki, Mari; Okamura, Yasushi; Larsson, H Peter

    2008-07-01

    Voltage-gated potassium channels are comprised of four subunits, and each subunit has a pore domain and a voltage-sensing domain (VSD). The four pore domains assemble to form one single central pore, and the four individual VSDs control the gate of the pore. Recently, a family of voltage-gated proton channels, such as H(V) or voltage sensor only protein (VSOP), was discovered that contain a single VSD but no pore domain. It has been assumed that VSOP channels are monomeric and contain a single VSD that functions as both the VSD and the pore domain. It remains unclear, however, how a protein that contains only a VSD and no pore domain can conduct ions. Using fluorescence measurements and immunoprecipitation techniques, we show here that VSOP channels are expressed as multimeric channels. Further, FRET experiments on constructs with covalently linked subunits show that VSOP channels are dimers. Truncation of the cytoplasmic regions of VSOP reduced the dimerization, suggesting that the dimerization is caused mainly by cytoplasmic protein-protein interactions. However, these N terminus- and C terminus-deleted channels displayed large proton currents. Therefore, we conclude that even though VSOP channels are expressed mainly as dimers in the cell membrane, single VSOP subunits could function independently as proton channels.

  19. Cooling Performance Test of the SCT LV&HV Power Supply Rack

    CERN Document Server

    Böhm, J; Vacek, V

    2005-01-01

    The cooling performance test of the 52U rack, housing SCT LV&HV power supplies for 192 detector modules, being located in USA15 cavern, has been curried out. The rack was equipped with two air-water heat exchangers, air turbine, four vertical fan tray units under crates and horizontal fans in four Artesyn AC/DC power supply units. The resistive dummy loads for 192 power supply channels have been placed in four crates and housed in the adjacent rack.

  20. Kinetic and thermodynamic properties of two barley thioredoxin h isozymes, HvTrxh1 and HvTrxh2

    DEFF Research Database (Denmark)

    Maeda, Kenji; Hägglund, Per; Björnberg, Olof

    2010-01-01

    Barley thioredoxin h isozymes 1 (HvTrxh1) and barley thioredoxin h isozymes 2 (HvTrxh2) show distinct spatiotemporal distribution in germinating seeds. Using a novel approach involving measurement of bidirectional electron transfer rates between Escherichia coli thioredoxin, which exhibits redox......-dependent fluorescence, and the barley isozymes, reaction kinetics and thermodynamic properties were readily determined. The reaction constants were 60% higher for HvTrxh1 than HvTrxh2, while their redox potentials were very similar. The primary nucleophile, Cys(N), of the active site Trp-Cys(N)-Gly-Pro-Cys...

  1. 冷胁迫下大麦幼苗根质膜水通道蛋白基因的表达%Expression of RootHvPIPsof Barley Seedling under Chilling Stress

    Institute of Scientific and Technical Information of China (English)

    段瑞君; 熊辉岩; 且原真木

    2014-01-01

    The plant plasma membrane aquaporin (plasma membrane intrinsic proteins, PIPs) is a kind of mem-brane intrinsic proteins which has high selectivity and water transport. They play important roles in many phys-iological activities in plant growth and development. In this study, seedlings of barley variety ‘Haruna-nijo’ were treated with chilling stress. Expression of water channel protein PIPs of root in two processes which were stress period (4℃, 48 h) and recovery period (16℃, 48 h) were analyzed with quantitative real-time reverse transcriptase PCR (qRT-PCR). And root hydraulic conductivity (Lpr), root length and seedling height were ana-lyzed at the same time. The results showed that: after 4℃ and 48 h stress, the growth of the barley seedlings was signiifcantly inhibited, but root growth was no signiifcant changed; after 16℃, 48 h recovery, shoot height of stressed-seedling caught up that of control seedlings and root growth did not change signiifcantly; root hy-draulic conductivity decreased in the period of chilling stress and increased rapidly in recovery period but there were no significant difference. The results of qRT-PCR showed: the highest expression were HvPIP1;2 and HvPIP1;3, the lowest expressionwereHvPIP1;1 andHvPIP2;3. Compared with the control group,HvPIPsex-pression were decreased in all after cold treatment, in which HvPIP1;2, HvPIP1;3, HvPIP1;4, HvPIP1;5, HvPIP2;1,HvPIP2;2 were down-regulated signiifcantly. In recovery period, most ofHvPIPs expression were increased, espeacallyHvPIP1;1,HvPIP1;2, HvPIP1;5,HvPIP2;3were up-regulated significantly, but HvPIP1;4, HvPIP2;5 were down-regulated. This study found thatHvPIPs expressions of barley root were down-regulated overall in chilling stress and in recovery growth mostHvPIPs were up-regulated. Combined with changes of root hydraulic conductivity and plant growth, the role of barleyHvPIPs in chilling resistance reaction speculated thatHvPIPs effected water absorption were different in

  2. Fusion to snowdrop lectin magnifies the oral activity of insecticidal ω-Hexatoxin-Hv1a peptide by enabling its delivery to the central nervous system.

    Directory of Open Access Journals (Sweden)

    Elaine C Fitches

    Full Text Available BACKGROUND: The spider-venom peptide ω-hexatoxin-Hv1a (Hv1a targets insect voltage-gated calcium channels, acting directly at sites within the central nervous system. It is potently insecticidal when injected into a wide variety of insect pests, but it has limited oral toxicity. We examined the ability of snowdrop lectin (GNA, which is capable of traversing the insect gut epithelium, to act as a "carrier" in order to enhance the oral activity of Hv1a. METHODOLOGY/PRINCIPAL FINDINGS: A synthetic Hv1a/GNA fusion protein was produced by recombinant expression in the yeast Pichia pastoris. When injected into Mamestra brassicae larvae, the insecticidal activity of the Hv1a/GNA fusion protein was similar to that of recombinant Hv1a. However, when proteins were delivered orally via droplet feeding assays, Hv1a/GNA, but not Hv1a alone, caused a significant reduction in growth and survival of fifth stadium Mamestra brassicae (cabbage moth larvae. Feeding second stadium larvae on leaf discs coated with Hv1a/GNA (0.1-0.2% w/v caused ≥ 80% larval mortality within 10 days, whereas leaf discs coated with GNA (0.2% w/v showed no acute effects. Intact Hv1a/GNA fusion protein was delivered to insect haemolymph following ingestion, as shown by Western blotting. Immunoblotting of nerve chords dissected from larvae following injection of GNA or Hv1a/GNA showed high levels of bound proteins. When insects were injected with, or fed on, fluorescently labelled GNA or HV1a/GNA, fluorescence was detected specifically associated with the central nerve chord. CONCLUSIONS/SIGNIFICANCE: In addition to mediating transport of Hv1a across the gut epithelium in lepidopteran larvae, GNA is also capable of delivering Hv1a to sites of action within the insect central nervous system. We propose that fusion to GNA provides a general mechanism for dramatically enhancing the oral activity of insecticidal peptides and proteins.

  3. Biomedical Applications of Fermenticin HV6b Isolated from Lactobacillus fermentum HV6b MTCC10770

    Directory of Open Access Journals (Sweden)

    Baljinder Kaur

    2013-01-01

    Full Text Available Fermenticin HV6b is a class IIa antimicrobial peptide produced by Lactobacillus fermentum HV6b MTCC 10770 isolated from human vaginal ecosystem. It shows growth inhibition of a wide range of opportunistic pathogens of humans, for example, Bacteroides, Gardnerella vaginalis, Mobiluncus, Staphylococci, and Streptococci, associated with bacterial vaginosis in humans. It does possess an impressive sperm immobilization and spermicidal activity tested against human sperms which makes it an attractive proposition for formulating antibacterial vaginosis and contraceptive products. Apart from this, in vitro studies conducted against four different tissue models have indicated its potential to be used as a component of anticancerous drug therapy as it is reported to induce apoptosis in cancerous cells. This information could be integrated in future studies focusing on in vivo assessment of anticancerous activity of lactic acid bacterial toxins or bacteriocins.

  4. Interval Valued Intuitionistic (S,T)-fuzzy Hv-submodules

    Institute of Scientific and Technical Information of China (English)

    Jian Ming ZHAN; W. A. DUDEK

    2006-01-01

    On the basis of the concept of the interval valued intuitionistic fuzzy sets introduced by K. Atanassov, the notion of interval valued intuitionistic fuzzy Hv-submodules of an Hv-module with respect to a t-norm T and an s-norm S is given and the characteristic properties are described. The homomorphic image and the inverse image are investigated. In particular, the connections between interval valued intuitionistic (S, T)-fuzzy Hv-submodules and interval valued intuitionistic (S,T)-fuzzy submodules are discussed.

  5. Mixtures of truncated basis functions

    DEFF Research Database (Denmark)

    Langseth, Helge; Nielsen, Thomas Dyhre; Rumí, Rafael

    2012-01-01

    In this paper we propose a framework, called mixtures of truncated basis functions (MoTBFs), for representing general hybrid Bayesian networks. The proposed framework generalizes both the mixture of truncated exponentials (MTEs) framework and the mixture of polynomials (MoPs) framework. Similar...

  6. Stable surface solitons in truncated complex potentials.

    Science.gov (United States)

    He, Yingji; Mihalache, Dumitru; Zhu, Xing; Guo, Lina; Kartashov, Yaroslav V

    2012-07-01

    We show that surface solitons in the one-dimensional nonlinear Schrödinger equation with truncated complex periodic potential can be stabilized by linear homogeneous losses, which are necessary to balance gain in the near-surface channel arising from the imaginary part of potential. Such solitons become stable attractors when the strength of homogeneous losses acquires values from a limited interval and they exist in focusing and defocusing media. The domains of stability of the surface solitons shrink with an increase in the amplitude of the imaginary part of complex potential.

  7. Stable surface solitons in truncated complex potentials

    CERN Document Server

    He, Yingji; Zhu, Xing; Guo, Lina; Kartashov, Yaroslav V

    2012-01-01

    We show that surface solitons in the one-dimensional nonlinear Schr\\"odinger equation with truncated complex periodic potential can be stabilized by linear homogeneous losses, which are necessary to balance gain in the near-surface channel arising from the imaginary part of potential. Such solitons become stable attractors when the strength of homogeneous losses acquires values from a limited interval and they exist in focusing and defocusing media. The domains of stability of surface solitons shrink with increase of the amplitude of imaginary part of complex potential.

  8. How Truncating Are 'Truncating Languages'? Evidence from Russian and German.

    Science.gov (United States)

    Rathcke, Tamara V

    Russian and German have pr eviously been described as 'truncating', or cutting off target frequencies of the phrase-final pitch trajectories when the time available for voicing is compromised. However, supporting evidence is rare and limited to only a few pitch categories. This paper reports a production study conducted to document pitch adjustments to linguistic materials, in which the amount of voicing available for the realization of a pitch pattern varies from relatively long to extremely short. Productions of nuclear H+L*, H* and L*+H pitch accents followed by a low boundary tone were investigated in the two languages. The results of the study show that speakers of both 'truncating languages' do not utilize truncation exclusively when accommodating to different segmental environments. On the contrary, they employ several strategies - among them is truncation but also compression and temporal re-alignment - to produce the target pitch categories under increasing time pressure. Given that speakers can systematically apply all three adjustment strategies to produce some pitch patterns (H* L% in German and Russian) while not using truncation in others (H+L* L% particularly in Russian), we question the effectiveness of the typological classification of these two languages as 'truncating'. Moreover, the phonetic detail of truncation varies considerably, both across and within the two languages, indicating that truncation cannot be easily modeled as a unified phenomenon. The results further suggest that the phrase-final pitch adjustments are sensitive to the phonological composition of the tonal string and the status of a particular tonal event (associated vs. boundary tone), and do not apply to falling vs. rising pitch contours across the board, as previously put forward for German. Implications for the intonational phonology and prosodic typology are addressed in the discussion. © 2017 S. Karger AG, Basel.

  9. HV1 acts as a sodium sensor and promotes superoxide production in medullary thick ascending limb of Dahl salt-sensitive rats.

    Science.gov (United States)

    Jin, Chunhua; Sun, Jingping; Stilphen, Carly A; Smith, Susan M E; Ocasio, Hiram; Bermingham, Brent; Darji, Sandip; Guha, Avirup; Patel, Roshan; Geurts, Aron M; Jacob, Howard J; Lambert, Nevin A; O'Connor, Paul M

    2014-09-01

    We previously characterized a H(+) transport pathway in medullary thick ascending limb nephron segments that when activated stimulated the production of superoxide by nicotinamide adenine dinucleotide phosphate oxidase. Importantly, the activity of this pathway was greater in Dahl salt-sensitive rats than salt-resistant (SS.13(BN)) rats, and superoxide production was enhanced in low Na(+) media. The goal of this study was to determine the molecular identity of this pathway and its relationship to Na(+). We hypothesized that the voltage-gated proton channel, HV1, was the source of superoxide-stimulating H(+) currents. To test this hypothesis, we developed HV1(-/-) null mutant rats on the Dahl salt-sensitive rat genetic background using zinc-finger nuclease gene targeting. HV1 could be detected in medullary thick limb from wild-type rats. Intracellular acidification using an NH4Cl prepulse in 0 sodium/BaCl2 containing media resulted in superoxide production in thick limb from wild-type but not HV1(-/-) rats (Pthick limb and peritoneal macrophages only when HV1 was present. When fed a high-salt diet, blood pressure, outer medullary renal injury (tubular casts), and oxidative stress (4-hydroxynonenal staining) were significantly reduced in HV1(-/-) rats compared with wild-type Dahl salt-sensitive rats. We conclude that HV1 is expressed in medullary thick ascending limb and promotes superoxide production in this segment when intracellular Na(+) is low. HV1 contributes to the development of hypertension and renal disease in Dahl salt-sensitive rats.

  10. Conditional truncated plurigaussian simulation; Simulacao plurigaussiana truncada com condicionamento

    Energy Technology Data Exchange (ETDEWEB)

    Simon, Vitor Hugo

    1997-12-01

    The goal of this work was a development of an algorithm for the Truncated Plurigaussian Stochastic Simulation and its validation in a complex geologic model. The reservoir data comes from Aux Vases Zone at Rural Hill Field in Illinois, USA, and from the 2D geological interpretation, described by WEIMER et al. (1982), three sets of samples, with different grid densities ware taken. These sets were used to condition the simulation and to refine the estimates of the non-stationary matrix of facies proportions, used to truncate the gaussian random functions (RF). The Truncated Plurigaussian Model is an extension of the Truncated Gaussian Model (TG). In this new model its possible to use several facies with different spatial structures, associated with the simplicity of TG. The geological interpretation, used as a validation model, was chosen because it shows a set of NW/SE elongated tidal channels cutting the NE/SW shoreline deposits interleaved by impermeable facies. These characteristics of spatial structures of sedimentary facies served to evaluate the simulation model. Two independent gaussian RF were used, as well as an 'erosive model' as the truncation strategy. Also, non-conditional simulations were proceeded, using linearly combined gaussian RF with varying correlation coefficients. It was analyzed the influence of some parameters like: number of gaussian RF,correlation coefficient, truncations strategy, in the outcome of simulation, and also the physical meaning of these parameters under a geological point of view. It was showed, step by step, using an example, the theoretical model, and how to construct an algorithm to simulate with the Truncated Plurigaussian Model. The conclusion of this work was that even with a plain algorithm of the Conditional Truncated Plurigaussian and a complex geological model it's possible to obtain a usefulness product. (author)

  11. Potassium channels in barley: cloning, functional characterization and expression analyses in relation to leaf growth and development.

    Science.gov (United States)

    Boscari, Alexandre; Clément, Mathilde; Volkov, Vadim; Golldack, Dortje; Hybiak, Jolanta; Miller, Anthony J; Amtmann, Anna; Fricke, Wieland

    2009-12-01

    It is not known how the uptake and retention of the key osmolyte K(+) in cells are mediated in growing leaf tissue. In the present study on the growing leaf 3 of barley, we have cloned the full-length coding sequence of three genes which encode putative K(+) channels (HvAKT1, HvAKT2, HvKCO1/HvTPK1), and of one gene which encodes a putative K(+) transporter (HvHAK4). The functionality of the gene products of HvAKT1 and HvAKT2 was tested through expression in Xenopus laevis oocytes. Both are inward-rectifying K(+) channels which are inhibited by Cs(+). Function of HvAKT1 in oocytes requires co-expression of a calcineurin-interacting protein kinase (AtCIPK23) and a calcineurin B-like protein (AtCBL9) from Arabidopsis, showing cross-species complementation of function. In planta, HvAKT1 is expressed primarily in roots, but is also expressed in leaf tissue. HvAKT2 is expressed particularly in leaf tissue, and HvHAK4 is expressed particularly in growing leaf tissue. Within leaves, HvAKT1 and HvAKT2 are expressed predominantly in mesophyll. Expression of genes changes little in response to low external K(+) or salinity, despite major changes in K(+) concentrations and osmolality of cells. Possible contributions of HvAKT1, HvAKT2, HvKCO1 and HvHAK4 to regulation of K(+) relations of growing barley leaf cells are discussed.

  12. Further evidence of Chelonid herpesvirus 5 (ChHV5) latency

    DEFF Research Database (Denmark)

    Alfaro-Nunez, Alonzo; Bojesen, Anders Miki; Bertelsen, Mads F.;

    2016-01-01

    of ChHV5 DNA, recent PCR-based studies have demonstrated that large proportions of asymptomatic marine turtles are also carriers of ChHV5. We used a real-time PCR assay to quantify the levels of ChHV5 Glycoprotein B (gB) DNA in both tumour and non-tumour skin tissues, from clinically affected...

  13. Truncated States Obtained by Iteration

    Institute of Scientific and Technical Information of China (English)

    W.B.Cardoso; N.G.de Almeida

    2008-01-01

    We introduce the concept of truncated states obtained via iterative processes(TSI)and study its statistical features,making an analogy with dynamical systems theory(DST).As a specific example,we have studied TSI for the doubring and the logistic functions,which are standard functions in studying chaos.TSI for both the doubling and logistic functions exhibit certain similar patterns when their statistical features are compared from the point of view of DST.

  14. Truncated Calogero-Sutherland models

    CERN Document Server

    Pittman, S M; Olshanii, M; del Campo, A

    2016-01-01

    A one-dimensional quantum many-body system consisting of particles confined in a harmonic potential and subject to finite-range two-body and three-body inverse-square interactions is introduced. The range of the interactions is set by truncation beyond a number of neighbors and can be tuned to interpolate between the Calogero-Sutherland model and a system with interactions among nearest and next-nearest neighbors discussed by Jain and Khare. The model also includes the Tonks-Girardeau gas describing impenetrable bosons as well as a novel extension with truncated interactions. All these systems are exactly solvable and exhibit a linear spectrum, with the effect of the interactions being absorbed in a nontrivial zero-point energy. We characterize the degeneracies and derive the canonical partition function. While the ground state wavefunction takes a truncated Bijl-Jastrow form, excited states are found in terms of multivariable symmetric polynomials. We numerically compute the density profile and one-body redu...

  15. Profile optimization for an HV insulator in vacuum

    Energy Technology Data Exchange (ETDEWEB)

    Egiziano, L.; Spagnuolo, G.; Tucci, V. [Univ. di Salerno, Fisciano (Italy). Dipt. di Ingegneria dell`Informazione e Ingegneria Elettrica; Lupo, G.; Petrarca, C. [Univ. di Napoli Federico II (Italy). Dipt. di Ingegneria Elettrica

    1996-12-31

    The exposition of HV solid insulators in vacuum to relevant voltage differences could determine the surface flashover along the solid dielectric-vacuum interface. Insulator holdoff capabilities can be significantly improved by limiting the field intensity in proximity of the electrodes by means of a Geometrical Field Control, namely designing the insulator profile so that the region subjected to high field is shifted away from the regions where the electrodes join the solid dielectric-vacuum interface. In this paper a new profile for an HV insulator in vacuum is presented. An axially symmetrical configuration constituted by a couple of coaxial cylindrical electrodes is considered, with the insulator shape designed to guarantee similar performances for both field polarities. The effectiveness of the design is validated by means of numerical simulations and by experimental results involving D.C. and impulse flashover performances.

  16. AUDISON(欧迪臣)THESIS HV VENTI

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    点评:THESIS HV VENTI产品刚刚上市几个月,就斩获2004-2005届欧洲汽车移动音响的最高大奖——EISA奖。拥有双重立体功放,含有超强电流、超强功率两种功放模式,在经过AUDISON“欧迪臣”工程师们对汽车音响功放理念的最深刻的研究,导入了一流散热技术和再加上超级审美艺术,最终造就了这款有王者风范的汽车立体音响功放——THESIS HV VENTI。

  17. Further evidence of Chelonid herpesvirus 5 (ChHV5) latency: high levels of ChHV5 DNA detected in clinically healthy marine turtles.

    Science.gov (United States)

    Alfaro-Núñez, Alonzo; Bojesen, Anders Miki; Bertelsen, Mads F; Wales, Nathan; Balazs, George H; Gilbert, M Thomas P

    2016-01-01

    The Chelonid herpesvirus 5 (ChHV5) has been consistently associated with fibropapillomatosis (FP), a transmissible neoplastic disease of marine turtles. Whether ChHV5 plays a causal role remains debated, partly because while FP tumours have been clearly documented to contain high concentrations of ChHV5 DNA, recent PCR-based studies have demonstrated that large proportions of asymptomatic marine turtles are also carriers of ChHV5. We used a real-time PCR assay to quantify the levels of ChHV5 Glycoprotein B (gB) DNA in both tumour and non-tumour skin tissues, from clinically affected and healthy turtles drawn from distant ocean basins across four species. In agreement with previous studies, higher ratios of viral to host DNA were consistently observed in tumour versus non-tumour tissues in turtles with FP. Unexpectedly however, the levels of ChHV5 gB DNA in clinically healthy turtles were significantly higher than in non-tumour tissues from FP positive turtles. Thus, a large proportion of clinically healthy sea turtle populations worldwide across species carry ChHV5 gB DNA presumably through persistent latent infections. ChHV5 appears to be ubiquitous regardless of the animals' clinical conditions. Hence, these results support the theory that ChHV5 is a near ubiquitous virus with latency characteristics requiring co-factors, possibly environmental or immune related, to induce FP.

  18. Further evidence of Chelonid herpesvirus 5 (ChHV5 latency: high levels of ChHV5 DNA detected in clinically healthy marine turtles

    Directory of Open Access Journals (Sweden)

    Alonzo Alfaro-Núñez

    2016-07-01

    Full Text Available The Chelonid herpesvirus 5 (ChHV5 has been consistently associated with fibropapillomatosis (FP, a transmissible neoplastic disease of marine turtles. Whether ChHV5 plays a causal role remains debated, partly because while FP tumours have been clearly documented to contain high concentrations of ChHV5 DNA, recent PCR-based studies have demonstrated that large proportions of asymptomatic marine turtles are also carriers of ChHV5. We used a real-time PCR assay to quantify the levels of ChHV5 Glycoprotein B (gB DNA in both tumour and non-tumour skin tissues, from clinically affected and healthy turtles drawn from distant ocean basins across four species. In agreement with previous studies, higher ratios of viral to host DNA were consistently observed in tumour versus non-tumour tissues in turtles with FP. Unexpectedly however, the levels of ChHV5 gB DNA in clinically healthy turtles were significantly higher than in non-tumour tissues from FP positive turtles. Thus, a large proportion of clinically healthy sea turtle populations worldwide across species carry ChHV5 gB DNA presumably through persistent latent infections. ChHV5 appears to be ubiquitous regardless of the animals’ clinical conditions. Hence, these results support the theory that ChHV5 is a near ubiquitous virus with latency characteristics requiring co-factors, possibly environmental or immune related, to induce FP.

  19. Further evidence of Chelonid herpesvirus 5 (ChHV5) latency: high levels of ChHV5 DNA detected in clinically healthy marine turtles

    Science.gov (United States)

    Bojesen, Anders Miki; Bertelsen, Mads F.; Wales, Nathan; Balazs, George H.; Gilbert, M. Thomas P.

    2016-01-01

    The Chelonid herpesvirus 5 (ChHV5) has been consistently associated with fibropapillomatosis (FP), a transmissible neoplastic disease of marine turtles. Whether ChHV5 plays a causal role remains debated, partly because while FP tumours have been clearly documented to contain high concentrations of ChHV5 DNA, recent PCR-based studies have demonstrated that large proportions of asymptomatic marine turtles are also carriers of ChHV5. We used a real-time PCR assay to quantify the levels of ChHV5 Glycoprotein B (gB) DNA in both tumour and non-tumour skin tissues, from clinically affected and healthy turtles drawn from distant ocean basins across four species. In agreement with previous studies, higher ratios of viral to host DNA were consistently observed in tumour versus non-tumour tissues in turtles with FP. Unexpectedly however, the levels of ChHV5 gB DNA in clinically healthy turtles were significantly higher than in non-tumour tissues from FP positive turtles. Thus, a large proportion of clinically healthy sea turtle populations worldwide across species carry ChHV5 gB DNA presumably through persistent latent infections. ChHV5 appears to be ubiquitous regardless of the animals’ clinical conditions. Hence, these results support the theory that ChHV5 is a near ubiquitous virus with latency characteristics requiring co-factors, possibly environmental or immune related, to induce FP. PMID:27547576

  20. Das seneszenzassoziierte Gen HvS40 der Gerste

    OpenAIRE

    Trösch, Mirl

    2016-01-01

    In der vorliegenden Arbeit wurde das seneszenzassoziierte Gen HvS40 der Gerste als dual kodierendes Gen charakterisiert. Damit wurde ein solches Gen erstmals in Pflanzen beschrieben. Der alternative S40+1-Leserahmen, der den kanonischen Leserahmen im 5'-Bereich überragt, konnte auch in anderen monokotylen, jedoch nicht in dikotylen Arten gefunden werden. Das S40-Protein, das durch den kanonischen Leserahmen S40+3 kodiert wird, kann der pflanzenspezifischen Proteinfamilie DUF584 zugeordnet...

  1. Reliability 'H' scheme of HV/MV substations

    Directory of Open Access Journals (Sweden)

    Perić Dragoslav M.

    2015-01-01

    Full Text Available Substations (HV/MV connect transmission and distribution systems with consumers of electric energy. The selective search method was used for calculation of substation reliability, where all arrangement elements were grouped into blocks. Subject of the analysis was H-arrangements comprising air-insulated switchgears on the high voltage side of HV/MV substations with different number of feeder and transformer bays and diverse scope of the installed switching equipment. Failure rate and duration were used as main HV/MV substation equipment reliability indices. A large number of arrangements were classified into groups, and within a group the arrangements were ranked with the use of multiple criteria. It is shown that the reliability of the electricity transit depends on the equipment of field for the transit of electricity, which favors poorly equipped field. On the other hand, the reliability of transformation of the full power depends mostly on the equipment in coupling field. It is essential that in the coupling field, there are at least two disconnectors. Installation of the switch in the coupling field is meaningful only with appropriate protection, because it further improves reliability. Conclusions are drawn for phased construction and expansion of the single pole diagram with an additional field for the transmission line.

  2. Canis mtDNA HV1 database: a web-based tool for collecting and surveying Canis mtDNA HV1 haplotype in public database.

    Science.gov (United States)

    Thai, Quan Ke; Chung, Dung Anh; Tran, Hoang-Dung

    2017-06-26

    Canine and wolf mitochondrial DNA haplotypes, which can be used for forensic or phylogenetic analyses, have been defined in various schemes depending on the region analyzed. In recent studies, the 582 bp fragment of the HV1 region is most commonly used. 317 different canine HV1 haplotypes have been reported in the rapidly growing public database GenBank. These reported haplotypes contain several inconsistencies in their haplotype information. To overcome this issue, we have developed a Canis mtDNA HV1 database. This database collects data on the HV1 582 bp region in dog mitochondrial DNA from the GenBank to screen and correct the inconsistencies. It also supports users in detection of new novel mutation profiles and assignment of new haplotypes. The Canis mtDNA HV1 database (CHD) contains 5567 nucleotide entries originating from 15 subspecies in the species Canis lupus. Of these entries, 3646 were haplotypes and grouped into 804 distinct sequences. 319 sequences were recognized as previously assigned haplotypes, while the remaining 485 sequences had new mutation profiles and were marked as new haplotype candidates awaiting further analysis for haplotype assignment. Of the 3646 nucleotide entries, only 414 were annotated with correct haplotype information, while 3232 had insufficient or lacked haplotype information and were corrected or modified before storing in the CHD. The CHD can be accessed at http://chd.vnbiology.com . It provides sequences, haplotype information, and a web-based tool for mtDNA HV1 haplotyping. The CHD is updated monthly and supplies all data for download. The Canis mtDNA HV1 database contains information about canine mitochondrial DNA HV1 sequences with reconciled annotation. It serves as a tool for detection of inconsistencies in GenBank and helps identifying new HV1 haplotypes. Thus, it supports the scientific community in naming new HV1 haplotypes and to reconcile existing annotation of HV1 582 bp sequences.

  3. Applications of Fast Truncated Multiplication in Cryptography

    Directory of Open Access Journals (Sweden)

    Laszlo Hars

    2006-12-01

    Full Text Available Truncated multiplications compute truncated products, contiguous subsequences of the digits of integer products. For an n-digit multiplication algorithm of time complexity O(nα, with 1<α≤2, there is a truncated multiplication algorithm, which is constant times faster when computing a short enough truncated product. Applying these fast truncated multiplications, several cryptographic long integer arithmetic algorithms are improved, including integer reciprocals, divisions, Barrett and Montgomery multiplications, 2n-digit modular multiplication on hardware for n-digit half products. For example, Montgomery multiplication is performed in 2.6 Karatsuba multiplication time.

  4. Applications of Fast Truncated Multiplication in Cryptography

    Directory of Open Access Journals (Sweden)

    Hars Laszlo

    2007-01-01

    Full Text Available Truncated multiplications compute truncated products, contiguous subsequences of the digits of integer products. For an n-digit multiplication algorithm of time complexity O(nα, with 1<α≤2, there is a truncated multiplication algorithm, which is constant times faster when computing a short enough truncated product. Applying these fast truncated multiplications, several cryptographic long integer arithmetic algorithms are improved, including integer reciprocals, divisions, Barrett and Montgomery multiplications, 2n-digit modular multiplication on hardware for n-digit half products. For example, Montgomery multiplication is performed in 2.6 Karatsuba multiplication time.

  5. Minimum decoding trellis length and truncation depth of wrap-around Viterbi algorithm for TBCC in mobile WiMAX

    OpenAIRE

    Liu Yu-Sun; Tsai Yao-Yu

    2011-01-01

    Abstract The performance of the wrap-around Viterbi decoding algorithm with finite truncation depth and fixed decoding trellis length is investigated for tail-biting convolutional codes in the mobile WiMAX standard. Upper bounds on the error probabilities induced by finite truncation depth and the uncertainty of the initial state are derived for the AWGN channel. The truncation depth and the decoding trellis length that yield negligible performance loss are obtained for all transmission rates...

  6. Inversion of H/V ratio in layered systems

    Science.gov (United States)

    Pina Flores, J.; García-Jerez, A.; Luzon, F.; Perton, M.; Sanchez-Sesma, F. J.

    2014-12-01

    Both coda of earthquakes and microtremors are assumed to be diffuse fields resulting from multiple scattering. From the diffuse field theory, the average of the autocorrelation of displacement components at a given receiver measures the directional energy densities that are proportional to the imaginary parts of the Green's function for source and receiver at the same point. The directional energies have been recently related to the calculation of microtremor H/V spectral ratio (MHVSR). These ratios are widely used in the assessment of the dominant frequency of soil sites and their measurements are relatively simple as only one station is required. The H/V spectral ratios have also been interpreted as representing either directly the S wave amplification or the Rayleigh wave ellipticity. Moreover, the H/V ratios can be also used for a finer characterization of the site assuming horizontally layered media without lateral heterogeneities. In that case and for an appropriate noise normalization the experimental spectral ratios H2/V2 should correspond to their theoretical counterpart: the ratio 2 ImG11 / ImG33, where ImG11 and ImG33 are the imaginary parts of Green functions at the load point for horizontal and vertical components, respectively and for horizontally layered media. In order to guarantee a viable inversion, the imaginary part of the theoretical Green's functions must be efficiently computed using both an integral in the complex k plane (in terms of homogeneous plane waves) and the pole contributions due to Rayleigh and Love normal modes, which result from the (application of the) Cauchy residue theorem. ACKNOWLEDGEMENTS. This research has been partially supported by DGAPA-UNAM under Project IN104712 and the AXA Research Fund.

  7. Truncated states obtained by iteration

    CERN Document Server

    Cardoso, W B

    2007-01-01

    Quantum states of the electromagnetic field are of considerable importance, finding potential application in various areas of physics, as diverse as solid state physics, quantum communication and cosmology. In this paper we introduce the concept of truncated states obtained via iterative processes (TSI) and study its statistical features, making an analogy with dynamical systems theory (DST). As a specific example, we have studied TSI for the doubling and the logistic functions, which are standard functions in studying chaos. TSI for both the doubling and logistic functions exhibit certain similar patterns when their statistical features are compared from the point of view of DST. A general method to engineer TSI in the running-wave domain is employed, which includes the errors due to the nonidealities of detectors and photocounts.

  8. Molecular and functional characterization of the voltage-gated proton channel in zebrafish neutrophils.

    Science.gov (United States)

    Ratanayotha, Adisorn; Kawai, Takafumi; Higashijima, Shin-Ichi; Okamura, Yasushi

    2017-08-01

    Voltage-gated proton channels (Hv1/VSOP) are expressed in various cells types, including phagocytes, and are involved in diverse physiological processes. Although hvcn1, the gene encoding Hv1, has been identified across a wide range of species, most of the knowledge about its physiological function and expression profile is limited to mammals. In this study, we investigated the basic properties of DrHv1, the Hv1 ortholog in zebrafish (Danio rerio) which is an excellent animal model owing to the transparency, as well as its functional expression in native cells. Electrophysiological analysis using a heterologous expression system confirmed the properties of a voltage-gated proton channel are conserved in DrHv1 with differences in threshold and activation kinetics as compared to mouse (Mus musculus) Hv1 (mHv1). RT-PCR analysis revealed that hvcn1 is expressed in zebrafish neutrophils, as is the case in mammals. Subsequent electrophysiological analysis confirmed the functional expression of DrHv1 in zebrafish neutrophils, which suggests Hv1 function in phagocytes is conserved among vertebrates. We also found that DrHv1 is comparatively resistant to extracellular Zn(2+), which is a potent inhibitor of mammalian Hv1, and this phenomenon appears to reflect variation in the Zn(2+)-coordinating residue (histidine) within the extracellular linker region in mammalian Hv1. Notably, the serum Zn(2+) concentration is much higher in zebrafish than in mouse, raising the possibility that Zn(2+) sensitivity was acquired in accordance with a change in the serum Zn(2+) concentration. This study highlights the biological variation and importance of Hv1 in different animal species. © 2017 The Authors. Physiological Reports published by Wiley Periodicals, Inc. on behalf of The Physiological Society and the American Physiological Society.

  9. Statistical estimation for truncated exponential families

    CERN Document Server

    Akahira, Masafumi

    2017-01-01

    This book presents new findings on nonregular statistical estimation. Unlike other books on this topic, its major emphasis is on helping readers understand the meaning and implications of both regularity and irregularity through a certain family of distributions. In particular, it focuses on a truncated exponential family of distributions with a natural parameter and truncation parameter as a typical nonregular family. This focus includes the (truncated) Pareto distribution, which is widely used in various fields such as finance, physics, hydrology, geology, astronomy, and other disciplines. The family is essential in that it links both regular and nonregular distributions, as it becomes a regular exponential family if the truncation parameter is known. The emphasis is on presenting new results on the maximum likelihood estimation of a natural parameter or truncation parameter if one of them is a nuisance parameter. In order to obtain more information on the truncation, the Bayesian approach is also considere...

  10. Edge-TCT measurements on irradiated HV CMOS sensors

    CERN Document Server

    Weisser, Constantin

    2014-01-01

    Passive $100 \\times 100 \\,\\mu$m test diodes in an unirradiated and an irradiated HV2FEI4v3 HV-CMOS silicon sensor were analysed using the edge TCT technique. To integrate the sensor into the setup a PCB was designed to extract the signals, a cooling mechanism was constructed and the system housed in a shielding box. The observed signal had fast and slow contributions, that were interpreted as drift and diffusion. The former peaked in a region, that was interpreted as the depletion region, while the latter peaked further in the bulk material. Raising the bias voltage increased the depth of the former region, while pushing the latter region further into the bulk. The irradiated sample lost signal strength mainly in its slow part compared to the unirradiated sample, while its quick signal remained largely unaffected. As only the signal interpreted as drift is fast enough to be useful in LHC operation the investigated sensors could be considered radiation hard for this purpose. This gives further promise to ...

  11. Lamp with a truncated reflector cup

    Science.gov (United States)

    Li, Ming; Allen, Steven C.; Bazydola, Sarah; Ghiu, Camil-Daniel

    2013-10-15

    A lamp assembly, and method for making same. The lamp assembly includes first and second truncated reflector cups. The lamp assembly also includes at least one base plate disposed between the first and second truncated reflector cups, and a light engine disposed on a top surface of the at least one base plate. The light engine is configured to emit light to be reflected by one of the first and second truncated reflector cups.

  12. Truncated Perfect Actions for Staggered Fermions

    CERN Document Server

    Bietenholz, W

    1998-01-01

    We discuss the behavior of free perfect staggered fermions and truncated versions thereof. The study includes flavor non-degenerate masses. We suggest a new blocking scheme, which provides excellent locality of the perfect lattice action. A truncation procedure adequate for the structure of staggered fermions is applied. We consider spectral and thermodynamic properties and compare truncated perfect actions, Symanzik improved and standard staggered fermions in two and four dimensions.

  13. Caprine herpesvirus 1 (CpHV-1) vaginal infection of goats: clinical efficacy of fig latex.

    Science.gov (United States)

    Camero, Michele; Marinaro, Mariarosaria; Losurdo, Michele; Larocca, Vittorio; Bodnar, Livia; Patruno, Giovanni; Buonavoglia, Canio; Tempesta, Maria

    2016-01-01

    The latex of Ficus carica Linn. (Moraceae) has been shown to interfere with the replication of caprine herpesvirus (CpHV)-1 in vitro. The present study was undertaken to determine the efficacy of vaginal administration of fig latex in goats experimentally infected with CpHV-1. The fig latex reduced the clinical signs of the herpetic disease although it slightly influenced the titres of CpHV-1 shed. Thus, the fig latex maintained a partial efficacy in vivo.

  14. Computing Correct Truncated Excited State Wavefunctions

    CERN Document Server

    Bacalis, N C; Zang, J; Karaoulanis, D

    2016-01-01

    We demonstrate that, if a truncated expansion of a wave function is small, then the standard excited states computational method, of optimizing one root of a secular equation, may lead to an incorrect wave function - despite the correct energy according to the theorem of Hylleraas, Undheim and McDonald - whereas our proposed method [J. Comput. Meth. Sci. Eng. 8, 277 (2008)] (independent of orthogonality to lower lying approximants) leads to correct reliable small truncated wave functions. The demonstration is done in He excited states, using truncated series expansions in Hylleraas coordinates, as well as standard configuration-interaction truncated expansions.

  15. Computing correct truncated excited state wavefunctions

    Science.gov (United States)

    Bacalis, N. C.; Xiong, Z.; Zang, J.; Karaoulanis, D.

    2016-12-01

    We demonstrate that, if a wave function's truncated expansion is small, then the standard excited states computational method, of optimizing one "root" of a secular equation, may lead to an incorrect wave function - despite the correct energy according to the theorem of Hylleraas, Undheim and McDonald - whereas our proposed method [J. Comput. Meth. Sci. Eng. 8, 277 (2008)] (independent of orthogonality to lower lying approximants) leads to correct reliable small truncated wave functions. The demonstration is done in He excited states, using truncated series expansions in Hylleraas coordinates, as well as standard configuration-interaction truncated expansions.

  16. A STUDY ON THE INTERPRETATION OF WAVE COMPONENTS IN MICROTREMOR H/V SPECTRUM

    Science.gov (United States)

    Nagao, Takashi; Yamada, Masayuki; Nozu, Atsushi

    The peak information in microtremor H/V spectrum is often used in the evaluation of amplification characteristics of earthquake ground motion. Although characteristics of microtremor H/V spectrum can be generally explained by those of surface waves, the assumption that microtremor only consists of surface wave is hardly valid considering the fact that peak amplification is finite and often correlates with amplification characteristics of earthquake ground motion. This study presents a new in terpretation of wave components of microtremor H/V spectrum using medium response analysis. Mixture rates of surface wave and body wave that well explain microtremor H/V spectrum was studied.

  17. COS FUV Detector Response to New HV Management System at LP3 {LENA4}

    Science.gov (United States)

    Penton, Steven

    2013-10-01

    This program uses a series of 205s WAVECALS and 60s DCE dumps to exercise the new HV Management System. We first ramp to the Maximum HV for Both Segment FUVA/FUVB = 178/175, we then transition to the minimum HV {A/B = 167/163} using the new HV management system, then transition back to the Maximum HV. The WAVECAL exposures at the Maximum HV will be taken with G160M/1611 {C1611} and the minimums are taken with G160M/1623 {C1623}. The CENWAVE change is required to allow time for the HV change. The sequence is repeated with FUVA ON {FUVB OFF}, and then with FUVB ON {FUVA OFF}. DCE Dumps are included before and after each WAVECAL.All exposures in the program should execute at the LP3 position, using the ALTERNATE lifetime position.This program will use a special HV Table with the following changes to the normal HV/Aperture table:CENWAVE Lifetime Position HVA/HVB--------------------------1611 Alternate {LP3} 178/1751623 Alternate {LP3} 167/163LP3 FUV aperture positions and SIAF file updates are not absolutely required, as these are all internals, but they are desired.

  18. Identification of a vacuolar proton channel that triggers the bioluminescent flash in dinoflagellates

    Science.gov (United States)

    Rodriguez, Juan D.; Haq, Saddef; Bachvaroff, Tsvetan; Nowak, Kristine F.; Nowak, Scott J.; Morgan, Deri; Cherny, Vladimir V.; Sapp, Maredith M.; Bernstein, Steven; Bolt, Andrew; DeCoursey, Thomas E.; Place, Allen R.; Smith, Susan M. E.

    2017-01-01

    In 1972, J. Woodland Hastings and colleagues predicted the existence of a proton selective channel (HV1) that opens in response to depolarizing voltage across the vacuole membrane of bioluminescent dinoflagellates and conducts protons into specialized luminescence compartments (scintillons), thereby causing a pH drop that triggers light emission. HV1 channels were subsequently identified and demonstrated to have important functions in a multitude of eukaryotic cells. Here we report a predicted protein from Lingulodinium polyedrum that displays hallmark properties of bona fide HV1, including time-dependent opening with depolarization, perfect proton selectivity, and characteristic ΔpH dependent gating. Western blotting and fluorescence confocal microscopy of isolated L. polyedrum scintillons immunostained with antibody to LpHV1 confirm LpHV1’s predicted organellar location. Proteomics analysis demonstrates that isolated scintillon preparations contain peptides that map to LpHV1. Finally, Zn2+ inhibits both LpHV1 proton current and the acid-induced flash in isolated scintillons. These results implicate LpHV1 as the voltage gated proton channel that triggers bioluminescence in L. polyedrum, confirming Hastings’ hypothesis. The same channel likely mediates the action potential that communicates the signal along the tonoplast to the scintillon. PMID:28178296

  19. Minimum decoding trellis length and truncation depth of wrap-around Viterbi algorithm for TBCC in mobile WiMAX

    Directory of Open Access Journals (Sweden)

    Liu Yu-Sun

    2011-01-01

    Full Text Available Abstract The performance of the wrap-around Viterbi decoding algorithm with finite truncation depth and fixed decoding trellis length is investigated for tail-biting convolutional codes in the mobile WiMAX standard. Upper bounds on the error probabilities induced by finite truncation depth and the uncertainty of the initial state are derived for the AWGN channel. The truncation depth and the decoding trellis length that yield negligible performance loss are obtained for all transmission rates over the Rayleigh channel using computer simulations. The results show that the circular decoding algorithm with an appropriately chosen truncation depth and a decoding trellis just a fraction longer than the original received code words can achieve almost the same performance as the optimal maximum likelihood decoding algorithm in mobile WiMAX. A rule of thumb for the values of the truncation depth and the trellis tail length is also proposed.

  20. Acid extrusion from human spermatozoa is mediated by flagellar voltage-gated proton channel.

    Science.gov (United States)

    Lishko, Polina V; Botchkina, Inna L; Fedorenko, Andriy; Kirichok, Yuriy

    2010-02-05

    Human spermatozoa are quiescent in the male reproductive system and must undergo activation once introduced into the female reproductive tract. This process is known to require alkalinization of sperm cytoplasm, but the mechanism responsible for transmembrane proton extrusion has remained unknown because of the inability to measure membrane conductance in human sperm. Here, by successfully patch clamping human spermatozoa, we show that proton channel Hv1 is their dominant proton conductance. Hv1 is confined to the principal piece of the sperm flagellum, where it is expressed at unusually high density. Robust flagellar Hv1-dependent proton conductance is activated by membrane depolarization, an alkaline extracellular environment, endocannabinoid anandamide, and removal of extracellular zinc, a potent Hv1 blocker. Hv1 allows only outward transport of protons and is therefore dedicated to inducing intracellular alkalinization and activating spermatozoa. The importance of Hv1 for sperm activation makes it an attractive target for controlling male fertility.

  1. Copy number variation at the HvCBF4-HvCBF2 genomic segment is a major component of frost resistance in barley.

    Science.gov (United States)

    Francia, Enrico; Morcia, Caterina; Pasquariello, Marianna; Mazzamurro, Valentina; Milc, Justyna Anna; Rizza, Fulvia; Terzi, Valeria; Pecchioni, Nicola

    2016-09-01

    A family of CBF transcription factors plays a major role in reconfiguring the plant transcriptome in response to low-freezing temperature in temperate cereals. In barley, more than 13 HvCBF genes map coincident with the major QTL FR-H2 suggesting them as candidates to explain the function of the locus. Variation in copy number (CNV) of specific HvCBFs was assayed in a panel of 41 barley genotypes using RT-qPCR. Taking advantage of an accurate phenotyping that combined Fv/Fm and field survival, resistance-associated variants within FR-H2 were identified. Genotypes with an increased copy number of HvCBF4 and HvCBF2 (at least ten and eight copies, respectively) showed greater frost resistance. A CAPS marker able to distinguish the CBF2A, CBF2B and CBF2A/B forms was developed and showed that all the higher-ranking genotypes in term of resistance harbour only CBF2A, while other resistant winter genotypes harbour also CBF2B, although at a lower CNV. In addition to the major involvement of the HvCBF4-HvCBF2 genomic segment in the proximal cluster of CBF elements, a negative role of HvCBF3 in the distal cluster was identified. Multiple linear regression models taking into account allelic variation at FR-H1/VRN-H1 explained 0.434 and 0.550 (both at p < 0.001) of the phenotypic variation for Fv/Fm and field survival respectively, while no interaction effect between CNV at the HvCBFs and FR-H1/VRN-H1 was found. Altogether our data suggest a major involvement of the CBF genes located in the proximal cluster, with no apparent involvement of the central cluster contrary to what was reported for wheat.

  2. Traditional and Truncation schemes for Different Multiplier

    Directory of Open Access Journals (Sweden)

    Yogesh M. Motey

    2013-03-01

    Full Text Available A rapid and proficient in power requirement multiplier is always vital in electronics industry like DSP, image processing and ALU in microprocessors. Multiplier is such an imperative block w ith respect to power consumption and area occupied in the system. In order to meet the demand for high speed, various parallel array multiplication algorithms have been proposed by a number of authors. The array multipliers use a large amount of hardware, consequently consuming a large amount of power. One of the methods for multiplication is based on Indian Vedic mathematics. The total Vedic mathematics is based on sixteen sutras (word formulae and manifests a merged structure of mathematics. The parallel multipliers for example radix 2 and radix 4 booth multiplier does the computations using less number of adders and less number of iterative steps that results in, they occupy less space to that of serial multiplier. Truncated multipliers offer noteworthy enhancements in area, delay, and power. Truncated multiplication provides different method for reducing the power dissipation and area of rounded parallel multipliers in DSP systems. Since in a truncated multiplier the x less significant bits of the full-width product are discarded thus partial products are removed and replaced by a suit- able compensation equations, match the accuracy with hardware cost. A pseudo-carry compensation truncation (PCT scheme, it is for the multiplexer based array multiplier, which yields less average error among existing truncation methods.After studying many research papers it’s found that some of the schemes for multiplier are suitable because their own uniqueness of multiplication. Such schemes are listed in this paper for example the different truncation schemes like constant-correction truncation (CCT, variable -correction truncation (VCT, pseudo-carry compensation truncation (PCT are most suitable for truncated multiplier.

  3. Draft Genome Sequence of Pedobacter sp. Strain Hv1, an Isolate from Medicinal Leech Mucosal Castings.

    Science.gov (United States)

    Ott, Brittany M; Beka, Lidia; Graf, Joerg; Rio, Rita V M

    2015-12-17

    The Pedobacter sp. Hv1 strain was isolated from the medicinal leech, Hirudo verbana, mucosal castings. These mucosal sheds have been demonstrated to play a role in horizontal symbiont transmission. Here, we report the draft 4.9 Mbp genome sequence of Pedobacter sp. strain Hv1.

  4. SPECT using asymmetric pinholes with truncated projections

    Energy Technology Data Exchange (ETDEWEB)

    Lin Jianyu; Meikle, Steven R, E-mail: jianyu.lin@curtin.edu.au [Ramaciotti Imaging Centre, Brain and Mind Research Institute, University of Sydney (Australia)

    2011-07-07

    Tomographic systems employing truncated projections have been developed for parallel and fan beam collimation and for cone beam CT but the idea has not been extensively explored in pinhole single photon emission computed tomography (SPECT). In this paper, we explore the sampling requirements and system performance of SPECT systems with asymmetric pinhole collimators and truncated projections. We demonstrate that complete 3D sampling can be achieved by using multiple detectors with truncated asymmetric pinholes, offset axially from each other, and a spiral orbit. The use of truncated projections can be exploited in the design of pinhole SPECT systems by moving the pinholes closer to the subject, resulting in increased sensitivity and improved spatial resolution. Truncated and untruncated pinhole systems were evaluated using the contrast-to-noise ratio (CNR) calculated from the linearized local impulse response as a figure of merit. The CNR for the truncated pinhole system was up to 60% greater than that for the untruncated system at matched resolution for a source voxel near the centre of a uniform phantom and 30% greater at the edge. We conclude that an object can be reconstructed from asymmetric pinholes with truncated projections, which leads to potentially important design considerations and applications in single- and multi-pinhole SPECT.

  5. Asymptotic normality of randomly truncated stochastic algorithms

    CERN Document Server

    Lelong, Jérôme

    2010-01-01

    We study the convergence rate of randomly truncated stochastic algorithms, which consist in the truncation of the standard Robbins-Monro procedure on an increasing sequence of compact sets. Such a truncation is often required in practice to ensure convergence when standard algorithms fail because the expected-value function grows too fast. In this work, we give a self contained proof of a central limit theorem for this algorithm under local assumptions on the expected-value function, which are fairly easy to check in practice.

  6. Nonsupersymmetric magic theories and Ehlers truncations

    Science.gov (United States)

    Marrani, Alessio; Pradisi, Gianfranco; Riccioni, Fabio; Romano, Luca

    2017-07-01

    We consider the nonsupersymmetric “magic” theories based on the split quaternion and the split complex division algebras. We show that these theories arise as “Ehlers” SL(2, ℝ) and SL(3, ℝ) truncations of the maximal supergravity theory, exploiting techniques related to the very-extended Kac-Moody algebras. We also generalize the procedure to other SL(n, ℝ) truncations, resulting in additional classes of nonsupersymmetric theories, as well as to truncations of nonmaximal theories. Finally, we discuss duality orbits of extremal black hole solutions in some of these nonsupersymmetric theories.

  7. Asymptotic normality of randomly truncated stochastic algorithms

    CERN Document Server

    Lelong, Jérôme

    2010-01-01

    We study the convergence rate of randomly truncated stochastic algorithms, which consist in the truncation of the standard Robbins-Monro procedure on an increasing sequence of compact sets. Such a truncation is often required in practice to ensure convergence when standard algorithms fail because the expected-value function grows too fast. In this work, we give a self contained proof of a central limit theorem for this algorithm under local assumptions on the expected-value function, which are fairly easy to check in practice.

  8. Voltage-gated Proton Channels

    Science.gov (United States)

    DeCoursey, Thomas E.

    2014-01-01

    Voltage-gated proton channels, HV1, have vaulted from the realm of the esoteric into the forefront of a central question facing ion channel biophysicists, namely the mechanism by which voltage-dependent gating occurs. This transformation is the result of several factors. Identification of the gene in 2006 revealed that proton channels are homologues of the voltage-sensing domain of most other voltage-gated ion channels. Unique, or at least eccentric, properties of proton channels include dimeric architecture with dual conduction pathways, perfect proton selectivity, a single-channel conductance ~103 smaller than most ion channels, voltage-dependent gating that is strongly modulated by the pH gradient, ΔpH, and potent inhibition by Zn2+ (in many species) but an absence of other potent inhibitors. The recent identification of HV1 in three unicellular marine plankton species has dramatically expanded the phylogenetic family tree. Interest in proton channels in their own right has increased as important physiological roles have been identified in many cells. Proton channels trigger the bioluminescent flash of dinoflagellates, facilitate calcification by coccolithophores, regulate pH-dependent processes in eggs and sperm during fertilization, secrete acid to control the pH of airway fluids, facilitate histamine secretion by basophils, and play a signaling role in facilitating B-cell receptor mediated responses in B lymphocytes. The most elaborate and best-established functions occur in phagocytes, where proton channels optimize the activity of NADPH oxidase, an important producer of reactive oxygen species. Proton efflux mediated by HV1 balances the charge translocated across the membrane by electrons through NADPH oxidase, minimizes changes in cytoplasmic and phagosomal pH, limits osmotic swelling of the phagosome, and provides substrate H+ for the production of H2O2 and HOCl, reactive oxygen species crucial to killing pathogens. PMID:23798303

  9. Quantifying truncation errors in effective field theory

    CERN Document Server

    Furnstahl, R J; Phillips, D R; Wesolowski, S

    2015-01-01

    Bayesian procedures designed to quantify truncation errors in perturbative calculations of quantum chromodynamics observables are adapted to expansions in effective field theory (EFT). In the Bayesian approach, such truncation errors are derived from degree-of-belief (DOB) intervals for EFT predictions. Computation of these intervals requires specification of prior probability distributions ("priors") for the expansion coefficients. By encoding expectations about the naturalness of these coefficients, this framework provides a statistical interpretation of the standard EFT procedure where truncation errors are estimated using the order-by-order convergence of the expansion. It also permits exploration of the ways in which such error bars are, and are not, sensitive to assumptions about EFT-coefficient naturalness. We first demonstrate the calculation of Bayesian probability distributions for the EFT truncation error in some representative examples, and then focus on the application of chiral EFT to neutron-pr...

  10. Truncation Analysis for the Derivative Schrodinger Equation

    Institute of Scientific and Technical Information of China (English)

    XU Peng Cheng; CHANG Qian Shun; GUO Bo Ling

    2002-01-01

    The truncation equation for the derivative nonlinear Schrodinger equation has been dis-cussed in this paper. The existence of a special heteroclinic orbit has been found by using geometricalsingular perturbation theory together with Melnikov's technique.

  11. Truncated Moment Analysis of Nucleon Structure Functions

    Energy Technology Data Exchange (ETDEWEB)

    A. Psaker; W. Melnitchouk; M. E. Christy; C. E. Keppel

    2007-11-16

    We employ a novel new approach using "truncated" moments, or integrals of structure functions over restricted regions of x, to study local quark-hadron duality, and the degree to which individual resonance regions are dominated by leading twists. Because truncated moments obey the same Q^2 evolution equations as the leading twist parton distributions, this approach makes possible for the first time a description of resonance region data and the phenomenon of quark-hadron duality directly from QCD.

  12. Emergence of fatal European genotype CyHV-3/KHV in mainland China.

    Science.gov (United States)

    Dong, Chuanfu; Li, Xuezhu; Weng, Shaoping; Xie, Shaoxia; He, Jianguo

    2013-02-22

    Cyprinid herpesvirus 3 (CyHV-3), also known as koi herpesvirus (KHV), is a highly infectious causative agent to common carp and koi worldwide. The virus is mainly consisted of European and Asian genotype isolates. To date, no European genotype CyHV-3 has been found emerging in the East and Southeast Asian regions. In late March 2011, an outbreak of CyHV-3 disease occurred in Guangzhou City, Guangdong Province, China, resulting in the deaths of approximately 200 large-sized adult koi within four weeks. One moribund koi was sampled for CyHV-3 isolation. Thus, a CyHV-3 was isolated in KCF-1 cells and designated as KHV-GZ11. Abundant mature or immature virions in infected KCF-1 cells were observed under a transmission electron micrograph. In addition, intra-nuclear inclusion body-like structures with masses of virions were also observed. Based on the TK and ORF136H genes, the sequence analyses revealed that KHV-GZ11 is a distinct European genotype of CyHV-3. Moreover, the infectivity experiment showed that KHV-GZ11 was highly virulent to koi. In summary, we are the first to confirm the emergence of fatal European genotype CyHV-3/KHV in East and Southeast Asia. Our study will provide new insight to explore the virus origin and epidemiology, as well as its pathogenicity.

  13. Baseline HV-interval predicts complete AV-block secondary to transcatheter aortic valve implantation.

    Science.gov (United States)

    Shin, Dong-In; Merx, Marc W; Meyer, Christian; Kirmanoglou, Kiriakos; Hellhammer, Katharina; Ohlig, Jan; Katsani, Dimitra; Zeus, Tobias; Westenfeld, Ralf; Eickholt, Christian; Linke, Axel; Kelm, Malte

    2015-10-01

    Development of AV-block is a frequent complication associated with transcatheter aortic valve implantation (TAVI). To date little is known about the predictive value of the HV-interval prior to TAVI with respect to the risk of AV-block development. HV-interval was determined in 25 consecutive elderly patients with severe aortic valve stenosis (AS) before and immediately after TAVI. All patients subsequently underwent TAVI and 8 of these 25 patients (32%) developed complete AV-block during the TAVI procedure requiring permanent pacemaker implantation. Six of these 8 patients (75%) had marked HV prolongation (>54 ms). Pre-procedural HV-interval was significantly prolonged in the subgroup developing complete AV-block (62.1 ms±13.0 vs 49.2 ms±12.9; P=0.029). Prolongation of the HV-interval above 54 ms was associated with a higher rate of complete AV-block (sensitivity 75.0%, specificity 77.8%, P=0.01). HV-interval was prolonged in approximately one third of our elderly patients with aortic valve stenosis and associated with a high rate of complete AV-block following TAVI. HV-interval is easily obtained during TAVI screening procedures, thus facilitating identification of patients at risk for complete AV-block due to TAVI and consequently enabling bespoke risk management.

  14. Transcriptome-Based Discovery of Fusarium graminearum Stress Responses to FgHV1 Infection.

    Science.gov (United States)

    Wang, Shuangchao; Zhang, Jingze; Li, Pengfei; Qiu, Dewen; Guo, Lihua

    2016-11-17

    Fusarium graminearum hypovirus 1 (FgHV1), which is phylogenetically related to Cryphonectria hypovirus 1 (CHV1), is a virus in the family Hypoviridae that infects the plant pathogenic fungus F. graminearum. Although hypovirus FgHV1 infection does not attenuate the virulence of the host (hypovirulence), it results in defects in mycelial growth and spore production. We now report that the vertical transmission rate of FgHV1 through asexual spores reached 100%. Using RNA deep sequencing, we performed genome-wide expression analysis to reveal phenotype-related genes with expression changes in response to FgHV1 infection. A total of 378 genes were differentially expressed, suggesting that hypovirus infection causes a significant alteration of fungal gene expression. Nearly two times as many genes were up-regulated as were down-regulated. A differentially expressed gene enrichment analysis identified a number of important pathways. Metabolic processes, the ubiquitination system, and especially cellular redox regulation were the most affected categories in F. graminearum challenged with FgHV1. The p20, encoded by FgHV1 could induce H₂O₂ accumulation and hypersensitive response in Nicotiana benthamiana leaves. Moreover, hypovirus FgHV1 may regulate transcription factors and trigger the RNA silencing pathway in F. graminearum.

  15. Prokaryotic expression of a truncated form of bovine herpesvirus 1 glycoprotein E (gE and its use in an ELISA for gE antibodies Expressão procariota de uma forma truncada da glicoproteína E (gE do herpesvírus bovino tipo 1 e uso em ELISA para anticorpos contra a gE

    Directory of Open Access Journals (Sweden)

    Stephan A.M. Oliveira

    2013-01-01

    Full Text Available This article describes the expression of a truncated form of bovine herpesvirus 1 (BoHV-1 glycoprotein E (gE for use as immunodiagnostic reagent. A 651 nucleotide fragment corresponding to the amino-terminal third (217 amino acids of BoHV-1 gE - that shares a high identity with the homologous BoHV-5 counterpart - was cloned as a 6×His-tag fusion protein in an Escherichia coli expression vector. A soluble protein of approximately 25 kDa purified from lysates of transformed E. coli was recognized in Western blot (WB by anti-6xHis-tag and anti-BoHV-1 gE monoclonal antibodies. In addition, the recombinant protein was specifically recognized in WB by antibodies present in the sera of cattle seropositive to BoHV-1 and BoHV-5. An indirect ELISA using the expressed protein as coating antigen performed comparably to a commercial anti-gE ELISA and was able to differentiate serologically calves vaccinated with a gE-deleted BoHV-5 strain from calves infected with BoHV-1. Thus, the truncated gE may be useful for serological tests designed to differentiate BoHV-1/BoHV-5 infected animals from those vaccinated with gE-negative marker vaccines.Este trabalho relata a expressão de uma forma truncada da glicoproteína E (gE do herpesvírus bovino tipo 1 (BoHV-1 para uso em imunodiagnóstico. Um fragmento de 651 pares de bases (pb correspondente ao terço amino-terminal (217 aminoácidos da gE do BoHV-1 - que compartilha uma alta identidade com a gE do BoHV-5 - foi clonada como proteína de fusão com cauda 6x de histidina em um vetor de expressão em Escherichia coli. Uma proteína solúvel de aproximadamente 25 kDa purificada de lisados de E.coli foi reconhecida em Western blot (WB por anticorpos monoclonais anti-6xHis-tag e anti-gE. Além disso, a proteína recombinante purificada foi reconhecida em WB por anticorpos presentes no soro de animais soropositivos ao BoHV-1 e BoHV-5. Um ELISA indireto utilizando a proteína recombinante como antígeno apresentou

  16. Mapping the sites of latency and reactivation by bovine herpesvirus 5 (BoHV-5 and a thymidine kinase-deleted BoHV-5 in lambs

    Directory of Open Access Journals (Sweden)

    Gustavo C. Cadore

    2013-12-01

    Full Text Available A thymidine kinase (tk-deleted bovine herpesvirus 5 (BoHV-5tkΔ was previously shown to establish latent infection and reactivate - even poorly - in a sheep model (Cadore et al. 2013. As TK-negative alphaherpesviruses are unlike to reactivate in neural tissue, this study investigated the sites of latency and reactivation by this recombinant in lambs. For this, groups of lambs were inoculated intranasally with the parental BoHV-5 strain (SV-507/99 or with the recombinant BoHV-5tkΔ. During latent infection (40 days post-inoculation, pi, the distribution of recombinant virus DNA in neural and non-neural tissues was similar to that of the parental virus. Parental and recombinant virus DNA was consistently detected by PCR in trigeminal ganglia (TGs; frequently in palatine and pharyngeal tonsils and, less frequently in the retropharyngeal lymph nodes. In addition, latent DNA of both viruses was detected in several areas of the brain. After dexamethasone (Dx administration (day 40pi, the recombinant virus was barely detected in nasal secretions contrasting with marked shedding of the parental virus. In tissues of lambs euthanized at day 3 post-Dx treatment (pDx, reverse-transcription-PCR (RT-PCR for a late viral mRNA (glycoprotein D gene demonstrated reactivation of parental virus in neural (TGs and lymphoid tissues (tonsils, lymph node. In contrast, recombinant virus mRNA was detected only in lymphoid tissues. These results demonstrate that BoHV-5 and the recombinant BoHV-5tkΔ do establish latent infection in neural and non-neural sites. Reactivation of the recombinant BoHV-5tkΔ, however, appeared to occur only in non-neural sites. In anyway, the ability of a tk-deleted strain to reactivate latent infection deserves attention in the context of vaccine safety.

  17. Identification and Characterization of Cyprinid Herpesvirus-3 (CyHV-3 Encoded MicroRNAs.

    Directory of Open Access Journals (Sweden)

    Owen H Donohoe

    Full Text Available MicroRNAs (miRNAs are a class of small non-coding RNAs involved in post-transcriptional gene regulation. Some viruses encode their own miRNAs and these are increasingly being recognized as important modulators of viral and host gene expression. Cyprinid herpesvirus 3 (CyHV-3 is a highly pathogenic agent that causes acute mass mortalities in carp (Cyprinus carpio carpio and koi (Cyprinus carpio koi worldwide. Here, bioinformatic analyses of the CyHV-3 genome suggested the presence of non-conserved precursor miRNA (pre-miRNA genes. Deep sequencing of small RNA fractions prepared from in vitro CyHV-3 infections led to the identification of potential miRNAs and miRNA-offset RNAs (moRNAs derived from some bioinformatically predicted pre-miRNAs. DNA microarray hybridization analysis, Northern blotting and stem-loop RT-qPCR were then used to definitively confirm that CyHV-3 expresses two pre-miRNAs during infection in vitro. The evidence also suggested the presence of an additional four high-probability and two putative viral pre-miRNAs. MiRNAs from the two confirmed pre-miRNAs were also detected in gill tissue from CyHV-3-infected carp. We also present evidence that one confirmed miRNA can regulate the expression of a putative CyHV-3-encoded dUTPase. Candidate homologues of some CyHV-3 pre-miRNAs were identified in CyHV-1 and CyHV-2. This is the first report of miRNA and moRNA genes encoded by members of the Alloherpesviridae family, a group distantly related to the Herpesviridae family. The discovery of these novel CyHV-3 genes may help further our understanding of the biology of this economically important virus and their encoded miRNAs may have potential as biomarkers for the diagnosis of latent CyHV-3.

  18. Identifying Excessively Rounded or Truncated Data

    CERN Document Server

    Knuth, Kevin H; Wheeler, Kevin R

    2016-01-01

    All data are digitized, and hence are essentially integers rather than true real numbers. Ordinarily this causes no difficulties since the truncation or rounding usually occurs below the noise level. However, in some instances, when the instruments or data delivery and storage systems are designed with less than optimal regard for the data or the subsequent data analysis, the effects of digitization may be comparable to important features contained within the data. In these cases, information has been irrevocably lost in the truncation process. While there exist techniques for dealing with truncated data, we propose a straightforward method that will allow us to detect this problem before the data analysis stage. It is based on an optimal histogram binning algorithm that can identify when the statistical structure of the digitization is on the order of the statistical structure of the data set itself.

  19. Cattle are a potential reservoir of bubaline herpesvirus 1 (BuHV1)

    Science.gov (United States)

    Maidana, S. S.; Delgado, F.; Vagnoni, L.; Mauroy, A.; Thiry, E.; Romera, S.

    2016-01-01

    In the present work, controlled experimental infection and transmission studies in domestic cattle (Bos taurus) and water buffaloes (Bubalus bubalis) were carried out to study the in vivo behaviour of bubaline herpesvirus 1 (BuHV1). Two bovine and two buffalo calves were infected with BuHV1 (20287N isolate) by intranasal aerosolisation. Two sentinel cattle did not receive the virus challenge, but were housed with infected buffaloes to evaluate horizontal transmission. All experimentally inoculated animals showed viral infection and respiratory clinical signs. BuHV1 experimentally infected calves showed intermittent viral excretion between 2 days and 18 days postinfection (dpi) with a maximum titre of excretion of 106 TCID50/ml and moderate rhinitis between 2 dpi and 20 dpi. BuHV1 experimentally inoculated buffaloes showed mild respiratory signs, which consisted mainly of serous nasal secretions during the infection period. Sentinel calves showed mucosal specific IgG1 antibodies at seven days postcontact. Viral DNA was detected by PCR and sequencing in both buffaloes and sentinel calves, which could be associated with latency. In conclusion, this study showed the susceptibility of cattle to BuHV1 after both experimental infection and contact with infected buffaloes. These data increase the scarce knowledge on the pathogenesis in natural host and the susceptibility of cattle to BuHV1 experimental infection. PMID:28074144

  20. Further evidence of Chelonid herpesvirus 5 (ChHV5) latency

    DEFF Research Database (Denmark)

    Alfaro Nuñez, Luis Alonso; Bojesen, Anders Miki; Bertelsen, Mads Frost;

    2016-01-01

    of ChHV5 DNA, recent PCR-based studies have demonstrated that large proportions of asymptomatic marine turtles are also carriers of ChHV5. We used a real-time PCR assay to quantify the levels of ChHV5 Glycoprotein B (gB) DNA in both tumour and non-tumour skin tissues, from clinically affected...... and healthy turtles drawn from distant ocean basins across four species. In agreement with previous studies, higher ratios of viral to host DNA were consistently observed in tumour versus non-tumour tissues in turtles with FP. Unexpectedly however, the levels of ChHV5 gB DNA in clinically healthy turtles were...... significantly higher than in non-tumour tissues from FP positive turtles. Thus, a large proportion of clinically healthy sea turtle populations worldwide across species carry ChHV5 gB DNA presumably through persistent latent infections. ChHV5 appears to be ubiquitous regardless of the animals' clinical...

  1. Box model for channels of human migration

    CERN Document Server

    Vitanov, Nikolay K

    2016-01-01

    We discuss a mathematical model of migration channel based on the truncated Waring distribution. The truncated Waring distribution is obtained for a more general model of motion of substance through a channel containing finite number of boxes. The model is applied then for case of migrants moving through a channel consisting of finite number of countries or cities. The number of migrants in the channel strongly depends on the number of migrants that enter the channel through the country of entrance. It is shown that if the final destination country is very popular then large percentage of migrants may concentrate there.

  2. Hochschild cohomology of truncated quiver algebras

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    For a truncated quiver algebra over a field of an arbitrary characteristic, its Hochschild cohomology is calculated. Moreover, it is shown that its Hochschild cohomology algebra is finitedimensional if and only if its global dimension is finite if and only if its quiver has no oriented cycles.

  3. Family Therapy for the "Truncated" Nuclear Family.

    Science.gov (United States)

    Zuk, Gerald H.

    1980-01-01

    The truncated nuclear family consists of a two-generation group in which conflict has produced a polarization of values. The single-parent family is at special risk. Go-between process enables the therapist to depolarize sharply conflicted values and reduce pathogenic relating. (Author)

  4. Balanced truncation for linear switched systems

    DEFF Research Database (Denmark)

    Petreczky, Mihaly; Wisniewski, Rafal; Leth, John-Josef

    2013-01-01

    in this paper, we provide a bound on the approximation error in the L2L2 norm for continuous-time and the l2l2 norm for discrete-time linear switched systems. We provide a system theoretic interpretation of grammians and their singular values. Furthermore, we show that the performance of balanced truncation...

  5. Consistent truncations with massive modes and holography

    CERN Document Server

    Cassani, Davide; Faedo, Anton F

    2011-01-01

    We review the basic features of some recently found consistent Kaluza-Klein truncations including massive modes. We emphasize the general ideas underlying the reduction procedure, then we focus on type IIB supergravity on 5-dimensional manifolds admitting a Sasaki-Einstein structure, which leads to half-maximal gauged supergravity in five dimensions. Finally, we comment on the holographic picture of consistency.

  6. Vortex breakdown in a truncated conical bioreactor

    DEFF Research Database (Denmark)

    Balci, Adnan; Brøns, Morten; Herrada, Miguel A.

    2015-01-01

    This numerical study explains the eddy formation and disappearance in a slow steady axisymmetric air–water flow in a vertical truncated conical container, driven by the rotating top disk. Numerous topological metamorphoses occur as the water height, Hw, and the bottom-sidewall angle, α, vary. It ...... are of fundamental interest and can be relevant for aerial bioreactors....

  7. Balanced truncation for linear switched systems

    DEFF Research Database (Denmark)

    Petreczky, Mihaly; Wisniewski, Rafal; Leth, John-Josef

    2013-01-01

    in this paper, we provide a bound on the approximation error in the L2L2 norm for continuous-time and the l2l2 norm for discrete-time linear switched systems. We provide a system theoretic interpretation of grammians and their singular values. Furthermore, we show that the performance of balanced truncation...

  8. Vortex breakdown in a truncated conical bioreactor

    DEFF Research Database (Denmark)

    Balci, Adnan; Brøns, Morten; Herrada, Miguel A.;

    2015-01-01

    This numerical study explains the eddy formation and disappearance in a slow steady axisymmetric air–water flow in a vertical truncated conical container, driven by the rotating top disk. Numerous topological metamorphoses occur as the water height, Hw, and the bottom-sidewall angle, α, vary. It ...... are of fundamental interest and can be relevant for aerial bioreactors....

  9. Volume of a doubly truncated hyperbolic tetrahedron

    CERN Document Server

    Kolpakov, Alexander

    2012-01-01

    The present paper regards the volume function of a doubly truncated hyperbolic tetrahedron. Starting from the previous results of J. Murakami, U. Yano and A. Ushijima, we have developed a unified approach to expressing the volume in different geometric cases by dilogarithm functions and to treat properly the many analytic strata of the latter. Finally, several numeric examples are given.

  10. Irregularly Shaped Space-Filling Truncated Octahedra

    Science.gov (United States)

    Hanson, John Robert

    2008-01-01

    For any parent tetrahedron ABCD, centroids of selected sub-tetrahedra form the vertices of an irregularly shaped space-filling truncated octahedron. To reflect these properties, such a figure will be called an ISTO. Each edge of the ISTO is parallel to and one-eighth the length of one of the edges of tetrahedron ABCD and the volume of the ISTO is…

  11. Phylogenetic position and replication kinetics of Heliothis virescens ascovirus 3h (HvAV-3h isolated from Spodoptera exigua.

    Directory of Open Access Journals (Sweden)

    Guo-Hua Huang

    Full Text Available Insect-specific ascoviruses with a circular genome are distributed in the USA, France, Australia and Indonesia. Here, we report the first ascovirus isolation from Spodoptera exigua in Hunan, China. DNA-DNA hybridization to published ascoviruses demonstrated that the new China ascovirus isolate is a variant of Heliothis virescens ascovirus 3a (HvAV-3a, thus named HvAV-3h. We investigated the phylogenetic position, cell infection, vesicle production and viral DNA replication kinetics of HvAV-3h, as well as its host-ranges. The major capsid protein (MCP gene and the delta DNA polymerase (DNA po1 gene of HvAV-3h were sequenced and compared with the available ascovirus isolates for phylogenetic analysis. This shows a close relationship with HvAV-3g, originally isolated from Indonesia, HvAV-3e from Australia and HvAV-3c from United States. HvAV-3h infection induced vesicle production in the SeE1 cells derived from S. exigua and Sf9 cells derived from S. frugiperda, resulting in more vesicles generated in Sf9 than SeE1. Viral DNA replication kinetics of HvAV-3h also demonstrated a difference between the two cell lines tested. HvAV-3h could readily infect three important insect pests Helicoverpa armigera (Hübner, Spodoptera exigua (Hübner and Spodoptera litura (Fabricius from two genera in different subfamilies with high mortalities.

  12. Neurological and epidemiological aspects of a BoHV-5 meningoencephalitis outbreak

    Directory of Open Access Journals (Sweden)

    Michele Lunardi

    2009-11-01

    Full Text Available Bovine herpesvirus 5 is a DNA virus that has been associated with meningoencephalitis in young cattle. While its clinical diagnosis is obscured by other major diseases that also produce similar neurological disease in cattle, the use of conventional virological techniques is hampered by the establishment of a lifelong latent infection in the host and the difficulty in differentiating BoHV-1 and BoHV-5. The aim of the current report is to describe the clinical and epidemiological aspects observed in a natural outbreak of BoHV-5 meningoencephalitis in a dairy cattle herd from Brazil. In the outbreak, the affected animals consisted of nine calves, which presented three possible forms of the neurological disease, subjectively classified as peracute, acute, and subacute/chronic. In contrast to conventional herpetic meningoencephalitis, characterized mainly by progressive multifocal brain dysfunctions, BoHV-5 infection resulted in focal non-progressive caudal brainstem dysfunction (pontomedullary syndrome in an animal presented with subacute/chronic BoHV-5 meningoencephalitis. The evaluation of CNS tissue of affected calves through both histological examination and multiplex-PCR was able to confirm BoHV-5 infection. Additionally, the analysis of CSF samples through PCR allowed ante-mortem BoHV-5 diagnosis during the outbreak, which enabled the implementation of several measures of control for the disease.O herpesvírus bovino 5 é um vírus DNA que tem sido associado a casos de meningoencefalite em bovinos jovens. Enquanto o diagnóstico clínico da doença é dificultado pelo fato de outras enfermidades importantes também determinarem quadro neurológico em bovinos, a utilização de técnicas virológicas convencionais no diagnóstico laboratorial tem sido inviabilizada pela latência viral que ocorre no hospedeiro e pela dificuldade em se diferenciar o BoHV-1 do BoHV-5. O objetivo deste relato é o de descrever alguns aspectos clínicos e

  13. Efficacy of an inactivated, recombinant bovine herpesvirus type 5 (BoHV-5) vaccine.

    Science.gov (United States)

    Campos, F S; Dezen, D; Antunes, D A; Santos, H F; Arantes, T S; Cenci, A; Gomes, F; Lima, F E S; Brito, W M E D; Filho, H C K; Batista, H B C R; Spilki, F R; Franco, A C; Rijsewijk, F A M; Roehe, P M

    2011-02-24

    Bovine herpesvirus type 5 (BoHV-5) is the causative agent of bovine herpetic encephalitis. In countries where BoHV-5 is prevalent, attempts to vaccinate cattle to prevent clinical signs from BoHV-5-induced disease have relied essentially on vaccination with BoHV-1 vaccines. However, such practice has been shown not to confer full protection to BoHV-5 challenge. In the present study, an inactivated, oil adjuvanted vaccine prepared with a recombinant BoHV-5 from which the genes coding for glycoprotein I (gI), glycoprotein E (gE) and membrane protein US9 were deleted (BoHV-5 gI/gE/US9(-)), was evaluated in cattle in a vaccination/challenge experiment. The vaccine was prepared from a virus suspension containing a pre-inactivation antigenic mass equivalent to 10(7.69) TCID(50)/dose. Three mL of the inactivated vaccine were administered subcutaneously to eight calves serologically negative for BoHV-5 (vaccinated group). Four other calves were mock-vaccinated with an equivalent preparation without viral antigens (control group). Both groups were boostered 28 days later. Neither clinical signs of disease nor adverse effects were observed during or after vaccination. A specific serological response, revealed by the development of neutralizing antibodies, was detected in all vaccinated animals after the first dose of vaccine, whereas control animals remained seronegative. Calves were subsequently challenged on day 77 post-vaccination (pv) with 10(9.25) TCID(50) of the wild-type BoHV-5 (parental strain EVI 88/95). After challenge, vaccinated cattle displayed mild signs of respiratory disease, whereas the control group developed respiratory disease and severe encephalitis, which led to culling of 2/4 calves. Searches for viral DNA in the central nervous system (CNS) of vaccinated calves indicated that wild-type BoHV-5 did not replicate, whereas in CNS tissues of calves on the control group, viral DNA was widely distributed. BoHV-5 shedding in nasal secretions was significantly

  14. Buccal mucosal ulcer healing effect of rhEGF/Eudispert hv hydrogel.

    Science.gov (United States)

    Park, Jeong Sook; Yoon, Joon Il; Li, Hong; Moon, Dong Cheul; Han, Kun

    2003-08-01

    We have studied the effect of rhEGF on the buccal mucosal ulcer healing. rhEGF was rapidly degraded upon incubation with the hamster buccal mucosal homogenates; The degradation of rhEGF was significantly inhibited by sodium lauryl sulfate (SLS). Eudispert hv hydrogel and Polycarbophil 974P hydrogel were prepared for rhEGF delivery and their mucoadhesiveness was measured by the Instron method. The mucoadhesive force of Eudispert hv was significantly greater than that of Polycarbophil 974P. Moreover, rhEGF in Eudispert hv hydrogel remained stable for about 2 months. To evaluate the ulcer healing effect of rhEGF, the buccal mucosal ulcer was induced in golden hamsters using acetic acid. At 24 h after administration of rhEGF/Eudispert hv hydrogel, the ulcerous area was decreased compared with rhEGF solution and, as a result, the curative ratio was 36.8 +/- 5.68%. By the addition of SLS (0.5%) to Eudispert hv hydrogel, the curative ratio increased 1.5 times. The mechanism of the action was probably due to a combination of protection of the drug against proteases present in mucosa and prolongation of the release of rhEGF from the formulation at the site of action.

  15. A new method for simultaneous detection and discrimination of Bovine herpesvirus types 1 (BoHV-1) and 5 (BoHV-5) using real time PCR with high resolution melting (HRM) analysis.

    Science.gov (United States)

    Marin, M S; Quintana, S; Leunda, M R; Recavarren, M; Pagnuco, I; Späth, E; Pérez, S; Odeón, A

    2016-01-01

    Bovine herpesvirus types 1 (BoHV-1) and 5 (BoHV-5) are antigenically and genetically similar. The aim of this study was to develop a simple and reliable one-step real time PCR assay with high resolution melting (HRM) analysis for the simultaneous detection and differentiation of BoHV-1 and BoHV-5. Optimization of assay conditions was performed with DNA from reference strains. Then, DNA from field isolates, clinical samples and tissue samples of experimentally infected animals were studied by real time PCR-HRM. An efficient amplification of real time PCR products was obtained, and a clear melting curve and appropriate melting peaks for both viruses were achieved in the HRM curve analysis for BoHV type identification. BoHV was identified in all of the isolates and clinical samples, and BoHV types were properly differentiated. Furthermore, viral DNA was detected in 12/18 and 7/18 samples from BoHV-1- and BoHV-5-infected calves, respectively. Real time PCR-HRM achieved a higher sensitivity compared with virus isolation or conventional PCR. In this study, HRM was used as a novel procedure. This method provides rapid, sensitive, specific and simultaneous detection of bovine alpha-herpesviruses DNA. Thus, this technique is an excellent tool for diagnosis, research and epidemiological studies of these viruses in cattle.

  16. EFFECT OF DATA TRUNCATION IN AN IMPLEMENTATION OF PIXEL CLUSTERING ON A CUSTOM COMPUTING MACHINE

    Energy Technology Data Exchange (ETDEWEB)

    M. LEESER; J. THEILER; ET AL

    2000-08-01

    We investigate the effect of truncating the precision of hyperspectral image data for the purpose of more efficiently segmenting the image using a variant of k-means clustering. We describe the implementation of the algorithm on field-programmable gate array (FPGA) hardware. Truncating the data to only a few bits per pixel in each spectral channel permits a more compact hardware design, enabling greater parallelism, and ultimately a more rapid execution. It also enables the storage of larger images in the onboard memory. In exchange for faster clustering, however, one trades off the quality of the produced segmentation. We find, however, that the clustering algorithm can tolerate considerable data truncation with little degradation in cluster quality. This robustness to truncated data can be extended by computing the cluster centers to a few more bits of precision than the data. Since there are so many more pixels than centers, the more aggressive data truncation leads to significant gains in the number of pixels that can be stored in memory and processed in hardware concurrently.

  17. Phase diagram of a truncated tetrahedral model

    Science.gov (United States)

    Krcmar, Roman; Gendiar, Andrej; Nishino, Tomotoshi

    2016-08-01

    Phase diagram of a discrete counterpart of the classical Heisenberg model, the truncated tetrahedral model, is analyzed on the square lattice, when the interaction is ferromagnetic. Each spin is represented by a unit vector that can point to one of the 12 vertices of the truncated tetrahedron, which is a continuous interpolation between the tetrahedron and the octahedron. Phase diagram of the model is determined by means of the statistical analog of the entanglement entropy, which is numerically calculated by the corner transfer matrix renormalization group method. The obtained phase diagram consists of four different phases, which are separated by five transition lines. In the parameter region, where the octahedral anisotropy is dominant, a weak first-order phase transition is observed.

  18. Approximate truncation robust computed tomography—ATRACT

    Science.gov (United States)

    Dennerlein, Frank; Maier, Andreas

    2013-09-01

    We present an approximate truncation robust algorithm to compute tomographic images (ATRACT). This algorithm targets at reconstructing volumetric images from cone-beam projections in scenarios where these projections are highly truncated in each dimension. It thus facilitates reconstructions of small subvolumes of interest, without involving prior knowledge about the object. Our method is readily applicable to medical C-arm imaging, where it may contribute to new clinical workflows together with a considerable reduction of x-ray dose. We give a detailed derivation of ATRACT that starts from the conventional Feldkamp filtered-backprojection algorithm and that involves, as one component, a novel original formula for the inversion of the two-dimensional Radon transform. Discretization and numerical implementation are discussed and reconstruction results from both, simulated projections and first clinical data sets are presented.

  19. Expression patterns of HvCKX genes indicate their role in growth and reproductive development of barley.

    Directory of Open Access Journals (Sweden)

    Wojciech Zalewski

    Full Text Available Cytokinin oxidase/dehydrogenase proteins (CKX are encoded by a multigene family of CKX genes with a varying number of members depending on species. For some of the genes, spectacular effects on grain production in selected cereals have been observed. Despite the fact that partial or full length sequences of most HvCKX genes in barley (Hordeum vulgare have already been published, in most cases their specific biological functions have not been reported. Detailed expression patterns for five HvCKX genes in different organs/tissues of developing barley plants coupled with analysis of RNAi silent for two genes are presented to test the hypothesis that these expression profiles might indicate their function. Elevated expression for four of them - HvCKX1, HvCKX9, HvCKX4, and HvCKX11 - was found in developing kernels of wild-type plants compared to other tissues. HvCKX5 was mainly expressed in leaf tissue. Lower expression was noted for HvCKX1 in seedling roots and for HvCKX9 in leaves. The documented effect of RNAi silencing of HvCKX1 and a trend for HvCKX9 was higher plant productivity, and the trait was inherited through four generations. Higher plant yield was determined by higher numbers of seeds and spikes. Increased productivity was significantly greater in HvCKX1 silenced plants showing higher relative expression of HvCKX1 in developing kernels of wild-type plants compared to the expression of HvCKX9. Both HvCKX1 silenced T1 seedlings of cv. Golden Promise and the newly transformed breeding line STH7308 showed greater root mass, but this trait was not inherited in the next generation. Similarly HvCKX9 silenced T1 seedlings exhibited greater plant height without inheritance in the next generation. It is suggested that these effects were not inherited because of compensation by other genes co-ordinately regulating reproductive development. One line with untypically changed, inherited phenotype, which was selected from several dozen silenced lines

  20. Transmission of Cyprinid herpesvirus-3 (CyHV-3) from goldfish to naïve common carp by cohabitation.

    Science.gov (United States)

    El-Matbouli, Mansour; Soliman, Hatem

    2011-06-01

    Cyprinid herpesvirus-3 (CyHV-3) has spread worldwide and has had a major impact on koi and common carp production. Previous studies on the host range of the CyHV-3 found that fish species other than koi and common carp are fully resistant to natural virus exposure. Recently, CyHV-3 was detected in goldfish (Carassius auratus auratus) that were in contact with CyHV-3 infected koi. In the present study, a specific RT-PCR product was amplified from the viral thymidine kinase gene in gills, intestine and brain tissues of CyHV-3 infected goldfish. This implied that CyHV-3 replicated in these goldfish. Also, in the presence of a stress factor such as temperature fluctuation, the CyHV-3 infected goldfish transmitted the virus to cohabitated naïve SPF common carp. CyHV-3 DNA was detected in the cohabitated naïve carp tissues by PCR. The results of this study demonstrate that goldfish is a carrier for CyHV-3, permit virus propagation, and disseminate the virus to susceptible carp causing the disease.

  1. HvZIP7 mediates zinc accumulation in barley (Hordeum vulgare) at moderately high zinc supply

    DEFF Research Database (Denmark)

    Tiong, Jingwen; Mcdonald, Glenn K.; Genc, Yusuf

    2014-01-01

    were also generated to further understand the functions of HvZIP7 in metal transport. HvZIP7 is strongly induced by Zn deficiency, primarily in vascular tissues of roots and leaves, and its protein was localized in the plasma membrane. These properties are similar to its closely related homologs...... in dicots. Overexpression of HvZIP7 in barley plants increased Zn uptake when moderately high concentrations of Zn were supplied. Significantly, there was a specific enhancement of shoot Zn accumulation, with no measurable increase in iron (Fe), manganese (Mn), copper (Cu) or cadmium (Cd). HvZIP7 displays...

  2. Truncated Levy distributions in an inelastic gas

    Energy Technology Data Exchange (ETDEWEB)

    Lambiotte, R. [Physique Statistique, Plasmas et Optique Non-lineaire, Universite Libre de Bruxelles, Campus Plaine, Boulevard du Triomphe, Code Postal 231, 1050 Brussels (Belgium) and SUPRATECS, Sart-Tilman, Universite de Liege, B5, B-4000 Liege (Belgium)]. E-mail: renaud.lambiotte@ulg.ac.be; Brenig, L. [Physique Statistique, Plasmas et Optique Non-lineaire, Universite Libre de Bruxelles, Campus Plaine, Boulevard du Triomphe, Code Postal 231, 1050 Brussels (Belgium)]. E-mail: lbrenig@ulb.ac.be

    2005-10-03

    We study a one-dimensional model for granular gases, the so-called inelastic Maxwell model. We show theoretically the existence of stationary solutions of the unforced case, that are characterized by an infinite average energy per particle. Moreover, we verify the quasi-stationarity of these states by performing numerical simulations with a finite number of particles, thereby highlighting truncated Levy distributions for the velocities.

  3. Truncated Dual-Cap Nucleation Site Development

    Science.gov (United States)

    Matson, Douglas M.; Sander, Paul J.

    2012-01-01

    During heterogeneous nucleation within a metastable mushy-zone, several geometries for nucleation site development must be considered. Traditional spherical dual cap and crevice models are compared to a truncated dual cap to determine the activation energy and critical cluster growth kinetics in ternary Fe-Cr-Ni steel alloys. Results of activation energy results indicate that nucleation is more probable at grain boundaries within the solid than at the solid-liquid interface.

  4. Clustered survival data with left-truncation

    DEFF Research Database (Denmark)

    Eriksson, Frank; Martinussen, Torben; Scheike, Thomas H.

    2015-01-01

    Left-truncation occurs frequently in survival studies, and it is well known how to deal with this for univariate survival times. However, there are few results on how to estimate dependence parameters and regression effects in semiparametric models for clustered survival data with delayed entry...... are investigated via simulation studies, and the suggested estimators are used in a study of prostate cancer based on the Finnish twin cohort where a twin pair is included only if both twins were alive in 1974....

  5. Prototyping of an HV-CMOS demonstrator for the High Luminosity-LHC upgrade

    Science.gov (United States)

    Vilella, E.; Benoit, M.; Casanova, R.; Casse, G.; Ferrere, D.; Iacobucci, G.; Peric, I.; Vossebeld, J.

    2016-01-01

    HV-CMOS sensors can offer important advantages in terms of material budget, granularity and cost for large area tracking systems in high energy physics experiments. This article presents the design and simulated results of an HV-CMOS pixel demonstrator for the High Luminosity-LHC. The pixel demonstrator has been designed in the 0.35 μm HV-CMOS process from ams AG and submitted for fabrication through an engineering run. To improve the response of the sensor, different wafers with moderate to high substrate resistivities are used to fabricate the design. The prototype consists of four large analog and standalone matrices with several pixel flavours, which are all compatible for readout with the FE-I4 ASIC. Details about the matrices and the pixel flavours are provided in this article.

  6. Accurate basis set truncation for wavefunction embedding

    Science.gov (United States)

    Barnes, Taylor A.; Goodpaster, Jason D.; Manby, Frederick R.; Miller, Thomas F.

    2013-07-01

    Density functional theory (DFT) provides a formally exact framework for performing embedded subsystem electronic structure calculations, including DFT-in-DFT and wavefunction theory-in-DFT descriptions. In the interest of efficiency, it is desirable to truncate the atomic orbital basis set in which the subsystem calculation is performed, thus avoiding high-order scaling with respect to the size of the MO virtual space. In this study, we extend a recently introduced projection-based embedding method [F. R. Manby, M. Stella, J. D. Goodpaster, and T. F. Miller III, J. Chem. Theory Comput. 8, 2564 (2012)], 10.1021/ct300544e to allow for the systematic and accurate truncation of the embedded subsystem basis set. The approach is applied to both covalently and non-covalently bound test cases, including water clusters and polypeptide chains, and it is demonstrated that errors associated with basis set truncation are controllable to well within chemical accuracy. Furthermore, we show that this approach allows for switching between accurate projection-based embedding and DFT embedding with approximate kinetic energy (KE) functionals; in this sense, the approach provides a means of systematically improving upon the use of approximate KE functionals in DFT embedding.

  7. Susceptibility of Japanese Cyprininae fish species to cyprinid herpesvirus 2 (CyHV-2).

    Science.gov (United States)

    Ito, Takafumi; Maeno, Yukio

    2014-03-14

    Cyprinid herpesvirus 2 (CyHV-2) is known as the causative agent of herpesviral haematopoietic necrosis (HVHN) of goldfish (Carassius auratus). Recently, the virus has also been detected from Prussian carp (C. gibelio) and crucian carp (C. carassius) from European and Asian countries. To analyze the risk of spreading to new host species, the susceptibility of other fish species to the virus is essential. In this study experimental infections of indigenous Cyprininae species in Japan were performed by immersion in and intraperitoneal injection of a CyHV-2 isolate. Although Edonishiki, a variety of goldfish, immersed with the virus showed a cumulative mortality of 90%, no mortality was observed in ginbuna C. auratus langsdorfii, nagabuna C. auratus buergeri, nigorobuna C. auratus grandoculis and common carp Cyprinus carpio. Cumulative mortality was 100, 20 and 10% in intraperitoneally injected Edonishiki, ginbuna and nagabuna, respectively. Furthermore all Edonishiki immersed with the virus died. However, even after stimuli of sudden temperature changes, the immersed ginbuna and nagabuna did not die. Moreover no mortality was observed in co-reared Ranchu, another variety of goldfish, with immersed ginbuna and nagabuna although all three Ranchu co-reared with immersed Edonishiki died. CyHV-2 DNA was detected and the virus was re-isolated from all dead fish. Moreover CyHV-2 DNA was detected from some of the surviving Carassius spp. These results revealed that susceptibility of Japanese indigenous Cyprininae fish species to CyHV-2 is much lower than for goldfish. In addition, ability of replication of CyHV-2 might be different among Carassius fish species.

  8. On the Computation of H/V and its Application to Microzonation and Seismic Design

    Science.gov (United States)

    Perton, M.; Martínez, J. A.; Lermo, J. F.; Sanchez-Sesma, F. J.

    2014-12-01

    The H/V ratio is the square root of the ratio of horizontal to vertical energies of ground motion. It has been observed that the frequency of the main peak is well suited for the characterization of site effects and had been widely used for micro-zonation and seismic structural design. Historically that ratio was made from the average of individual H/V ratios obtained from noise autocorrelations. Nevertheless, it has been recently pointed out that the H/V ratio should be calculated differently as the ratio of the average of H over the average of V. This calculation is based on the relation between the directional energies (the imaginary part of Green's function) and the noise autocorrelations. In general, the average of ratios is different from the ratio of averages. Although the frequency of the main response was correctly obtained, the associated amplification factor has generally been badly predicted, having little matching with the amplification observed during strong earthquakes. The unexpected decay behavior of such ratios at high frequency and the lack of stability and reproducibility of the H/V ratios are other problems that face the method. These problems are addressed here from the point of view of normalization of noise correlations. In fact, several normalization techniques have already been proposed in order to correctly retrieve the Green's function. Some of them are well suited for the retrieval of the surface wave contribution, while others are more appropriate for bulk wave incidence. Since the H/V ratio may be used for various purposes like surface wave tomography, micro-zonation or seismic design, different normalizations are discussed in functions of the objectives. The H/V obtained from local historical earthquakes on top or far away from the subduction zone are also discussed. ACKNOWLEDGEMENT This research has been partially supported by DGAPA-UNAM under Project IN104712 and the AXA Research Fund.

  9. Energy Productivity of the High Velocity Algae Raceway Integrated Design (ARID-HV)

    Energy Technology Data Exchange (ETDEWEB)

    Attalah, Said; Waller, Peter M.; Khawam, George; Ryan, Randy D.; Huesemann, Michael H.

    2015-06-03

    The original Algae Raceway Integrated Design (ARID) raceway was an effective method to increase algae culture temperature in open raceways. However, the energy input was high and flow mixing was poor. Thus, the High Velocity Algae Raceway Integrated Design (ARID-HV) raceway was developed to reduce energy input requirements and improve flow mixing in a serpentine flow path. A prototype ARID-HV system was installed in Tucson, Arizona. Based on algae growth simulation and hydraulic analysis, an optimal ARID-HV raceway was designed, and the electrical energy input requirement (kWh ha-1 d-1) was calculated. An algae growth model was used to compare the productivity of ARIDHV and conventional raceways. The model uses a pond surface energy balance to calculate water temperature as a function of environmental parameters. Algae growth and biomass loss are calculated based on rate constants during day and night, respectively. A 10 year simulation of DOE strain 1412 (Chlorella sorokiniana) showed that the ARID-HV raceway had significantly higher production than a conventional raceway for all months of the year in Tucson, Arizona. It should be noted that this difference is species and climate specific and is not observed in other climates and with other algae species. The algae growth model results and electrical energy input evaluation were used to compare the energy productivity (algae production rate/energy input) of the ARID-HV and conventional raceways for Chlorella sorokiniana in Tucson, Arizona. The energy productivity of the ARID-HV raceway was significantly greater than the energy productivity of a conventional raceway for all months of the year.

  10. Overexpression of Truncated Barley Cellulose Synthase and Preparation of Its Polyclonal Antibody%大麦纤维素合成酶截短体的重组表达及多克隆抗体制备

    Institute of Scientific and Technical Information of China (English)

    李学俊; 李新宇; 李迟园; 陈鹏

    2011-01-01

    A truncated non-transmembrane domain of barley cellulose synthase A (Hv-cesA)was determined by analysis of the hydrophobicity and prediction of transmembrane domains. The coding region of truncated non-transmembrane domains was obtained by PCR,and cloned into prokaryotic expression vector pET-28a( + ) with his-tag at its N terminal. The identified construct was transformed into E. Coli and overexpressed protein was purified by cobalt chelating chromatography and polyclonal antiserum was raised against rabbit. The results showed the truncated non-transmembrane domain was expressed in E. Coli Rosetta-gami2(DE3)in the form of inclusion bodies,and western blotting a-nalysis showed the raised antibody can specifically react with the antigen. These results laid the detection basis for further research on the expression of Hv-CesA and cellulose synthesis in cell wall.%对大麦纤维素合成酶(Hordeum vulgare CesA,Hv-CesA)的蛋白质序列进行疏水性分析和跨膜区预测,获得截短的亲水性非跨膜区特征序列,采用PCR扩增截短序列编码区,定向克隆入N端带有His标签的pET-28a(+)表达载体中,并转化大肠杆菌进行诱导表达,利用钴离子螯合层析纯化重组表达蛋白,并制备高效价的多克隆抗体.结果表明,截短的Hv-CesA基因在大肠杆菌Rosetta gami2以包涵体的形式高效表达,western blotting显示制备的多克隆抗体能特异识别其对应的抗原.

  11. Shared Frailty Model for Left-Truncated Multivariate Survival Data

    DEFF Research Database (Denmark)

    Jensen, Henrik; Brookmeyer, Ron; Aaby, Peter;

    multivariate survival data, left truncation, multiplicative hazard model, shared gamma frailty, conditional model, piecewise exponential model, childhood survival......multivariate survival data, left truncation, multiplicative hazard model, shared gamma frailty, conditional model, piecewise exponential model, childhood survival...

  12. KCNQ1 channels sense small changes in cell volume

    DEFF Research Database (Denmark)

    Grunnet, Morten; Jespersen, Thomas; MacAulay, Nanna

    2003-01-01

    . Incubation of the oocytes in cytochalasin D and experiments with truncated KCNQ1 channels suggest that KCNQ1 channels sense cell volume changes through interactions between the cytoskeleton and the N-terminus of the channel protein. From our results we propose that KCNQ1 and KCNQ4 channels play an important...

  13. Model Reduction for Nonlinear Systems by Incremental Balanced Truncation

    NARCIS (Netherlands)

    Besselink, Bart; van de Wouw, Nathan; Scherpen, Jacquelien M. A.; Nijmeijer, Henk

    2014-01-01

    In this paper, the method of incremental balanced truncation is introduced as a tool for model reduction of nonlinear systems. Incremental balanced truncation provides an extension of balanced truncation for linear systems towards the nonlinear case and differs from existing nonlinear balancing tech

  14. Model Reduction for Nonlinear Systems by Incremental Balanced Truncation

    NARCIS (Netherlands)

    Besselink, Bart; van de Wouw, Nathan; Scherpen, Jacquelien M. A.; Nijmeijer, Henk

    2014-01-01

    In this paper, the method of incremental balanced truncation is introduced as a tool for model reduction of nonlinear systems. Incremental balanced truncation provides an extension of balanced truncation for linear systems towards the nonlinear case and differs from existing nonlinear balancing tech

  15. Truncated VSV solutions to symmetric rank-deficient problems

    DEFF Research Database (Denmark)

    Fierro, Richardo D.; Hansen, Per Christian

    2001-01-01

    Symmetric VSV decompositions are new rank-revealing decompositions that exploit and preserve symmetry. Truncated VSV solutions are stabilized solutions computed by neglecting blocks in the VSV decomposition with small norm. We compare the truncated VSV solutions with truncated SVD solutions...... and give perturbation bounds for the VSV solutions. Numerical examples illustrate our results....

  16. Truncated VSV Solutions to Symmetric Rank-Deficient Problems

    DEFF Research Database (Denmark)

    Fierro, Ricardo D.; Hansen, Per Christian

    2002-01-01

    Symmetric VSV decompositions are new rank-revealing decompositions that exploit and preserve symmetry. Truncated VSV solutions are stabilized solutions computed by neglecting blocks in the VSV decomposition with small norm. We compare the truncated VSV solutions with truncated SVD solutions...... and give perturbation bounds for the VSV solutions. Numerical examples illustrate our results....

  17. Marginal phase correction of truncated Bessel beams

    Science.gov (United States)

    Sedukhin

    2000-06-01

    Approximate analytic expressions are obtained for evaluating the axial intensity and the central-lobe diameter of J0 Bessel beams transmitted through a finite-aperture phase filter. A reasonable quality factor governing the axial-intensity behavior of a phase-undistorted truncated Bessel beam is found to be the inverse square root of the Fresnel number defined, for a given aperture, from the axial point of geometrical shadow. Additional drastic reduction of axial-intensity oscillations is accomplished by using marginal phase correction of the beam instead of the well-known amplitude apodization. A procedure for analytically calculating an optimal monotonic slowly varying correction phase function is described.

  18. State Truncation for Large Markov Chains

    Institute of Scientific and Technical Information of China (English)

    JIANGLetian; XUGuozhi; ZHANGHao; YINGRendong

    2003-01-01

    One of the main issues to apply the Markov modeling method to reliability and availability analysis is the challenge called largeness, I.e., the explosive number of states, for a system with a large number of components.One method to quickly calculate the reliability of a sys-tem is to neglect ‘unimportant’ states in the Markov chain model. In this paper, based on a Markov model that is widely used in practical systems, a criterion of state trun-cation is presented.

  19. Generic Rigidity Matroids with Dilworth Truncations

    CERN Document Server

    Tanigawa, Shin-ichi

    2010-01-01

    We prove that the linear matroid that defines generic rigidity of $d$-dimensional body-rod-bar frameworks (i.e., structures consisting of disjoint bodies and rods mutually linked by bars) can be obtained from the union of ${d+1 \\choose 2}$ graphic matroids by applying variants of Dilworth truncation $n_r$ times, where $n_r$ denotes the number of rods. This leads to an alternative proof of Tay's combinatorial characterizations of generic rigidity of rod-bar frameworks and that of identified body-hinge frameworks.

  20. Usage of mechanically switching devices for HV electrostatic elements of beam optics

    CERN Document Server

    Mikhailichenko, Alexander

    2015-01-01

    We are considering usage of gas-filled mechanical relays-Kilovacs and Gigavacs- for power supply of HV electrical dipoles, quadrupoles etc., where even a time dependent regime required. One can expect the physical switching time on few nanosecond level with such devices operating up to 70kV with currents~50A.

  1. Pressure measurement in HV circuit-breaker; Mesure de pression dans un disjoncteur H.T.

    Energy Technology Data Exchange (ETDEWEB)

    Mottet, C. [Schneider Electric, Groupe appareillage, Lab. d' Essai A1, 75 - Paris (France)

    2002-06-01

    Electric arc pressure measurement in an HV circuit-breaker is fraught with difficulties concerning insulation, equi-potentiality, electromagnetic interference, corrosiveness of SF{sub 6} gas, and pressure and temperature rise. None of the many measurement methods attempted to data has proved wholly satisfactory. This article sets out an optical solution that does overcome the difficulties involved in measuring arc pressure. (author)

  2. The truncation of stellar discs A theoretical model

    CERN Document Server

    Battaner, E; Jiménez-Vicente, J

    1998-01-01

    The truncation of stellar discs is not abrupt but characterized by a continuous distancing from the exponential profile. There exists a truncation curve, $t(r)$, ending at a truncation radius, $r_t$. We present here a theoretical model in which it is assumed that the magnetic hypothesis explaining the flat rotation curve also explains the truncation. Once stars are born, the centripetal magnetic force previously acting on the progenitor gas cloud is suddenly interrupted, and stars must move to larger orbits or escape. The agreement between theoretical and observed truncation curves is very satisfactory. Parameters defining the disc gas rotation curve should therefore be related to those defining the truncation. It is predicted that rotation curves that quickly reach the asymptotic value $\\theta_0 = \\theta (r=\\infty)$ would have small truncation radii. On the contrary, $r_t$ and $\\theta_0$ itself, would be uncorrelated quantities.

  3. GMRT Hv Observations of the Eridanus Group of Galaxies

    Indian Academy of Sciences (India)

    A. Omar; K. S. Dwarakanath

    2005-03-01

    The GMRT HI 21cm-line observations of galaxies in the Eridanus group are presented. The Eridanus group, at a distance of ∼ 23 Mpc, is a loose group of ∼ 200 galaxies. The group extends to more than 10 Mpc in projection. The velocity dispersion of the galaxies in the group is ∼ 240 km s-1. The galaxies are clustered into different sub-groups. The overall population mix of the group is 30% (E + S0) and 70% (Sp + Irr). The observations of 57 Eridanus galaxies were carried out with the GMRT for ∼ 200 h. HI emission was detected from 31 galaxies. The channel rms of ∼ 1 mJy beam-1 was achieved for most of the image-cubes made with 4 h of data. The corresponding HI column density sensitivity (3) is ∼ 1 × 1020 cm-2 for a velocity-width of ∼ 13.4 km s-1. The 3 detection limit of HI mass is ∼ 1.2 × 107 M⊙ for a line-width of 50 km s-1. Total H${\\rm\\tiny I}$ images, H${\\rm\\tiny I}$ velocity fields, global H${\\rm\\tiny I}$ line profiles, H${\\rm\\tiny I}$ mass surface densities, H${\\rm\\tiny I}$ disk parameters and H${\\rm\\tiny I}$ rotation curves are presented. The velocity fields are analysed separately for the approaching and the receding sides of the galaxies. These data will be used to study the H${\\rm\\tiny I}$ and the radio continuum properties, the Tully–Fisher relations, the dark matter halos, and the kinematical and H${\\rm\\tiny I}$ lopsidedness in galaxies.

  4. Mapping of sites facing aqueous environment of voltage-gated proton channel at resting state: a study with PEGylation protection.

    Science.gov (United States)

    Kurokawa, Tatsuki; Okamura, Yasushi

    2014-01-01

    Hv1 (also named, voltage-sensor only protein, VSOP) lacks an authentic pore domain, and its voltage sensor domain plays both roles in voltage sensing and proton permeation. The activities of a proton channel are intrinsic to protomers of Hv1, while Hv1 is dimeric in biological membranes; cooperative gating is exerted by interaction between two protomers. As the signature pattern conserved among voltage-gated channels and voltage-sensing phosphatase, Hv1 has multiple arginines intervened by two hydrophobic residues on the fourth transmembrane segment, S4. S4 moves upward relative to other helices upon depolarization, causing conformational change possibly leading to the formation of a proton-selective conduction pathway. However, detailed mechanisms of proton-selectivity and gating of Hv1 are unknown. Here we took an approach of PEGylation protection assay to define residues facing the aqueous environment of mouse Hv1 (mHv1). Accessibilities of two maleimide molecules, N-ethylmaleimide (NEM) and 4-acetamido-4'-maleimidylstilbene-2,2'-disulfonic acid (AMS), were examined on cysteine introduced into individual sites. Only the first arginine on S4 (R1: R201) was inaccessible by NEM and AMS in mHv1. This is consistent with previous results of electrophysiology on the resting state channel, suggesting that the accessibility profile represents the resting state of mHv1. D108, critical for proton selectivity, was accessible by AMS and NEM, suggesting that D108 faces the vestibule. F146, a site critical for blocking by a guanidinium-reagent, was accessible by NEM, suggesting that F146 also faces the inner vestibule. These findings suggest an inner vestibule lined by several residues on S2 including F146, D108 on S1, and the C-terminal half of S4. © 2013.

  5. Entanglement Entropy from the Truncated Conformal Space

    CERN Document Server

    Palmai, T

    2016-01-01

    A new numerical approach to entanglement entropies of the Renyi type is proposed for one-dimensional quantum field theories. The method extends the truncated conformal spectrum approach and we will demonstrate that it is especially suited to study the crossover from massless to massive behavior when the subsystem size is comparable to the correlation length. We apply it to different deformations of massless free fermions, corresponding to the scaling limit of the Ising model in transverse and longitudinal fields. For massive free fermions the exactly known crossover function is reproduced already in very small system sizes. The new method treats ground states and excited states on the same footing, and the applicability for excited states is illustrated by reproducing Renyi entropies of low-lying states in the transverse field Ising model.

  6. A supersymmetric consistent truncation for conifold solutions

    CERN Document Server

    Cassani, Davide

    2010-01-01

    We establish a supersymmetric consistent truncation of type IIB supergravity on the T^{1,1} coset space, based on extending the Papadopoulos-Tseytlin ansatz to the full set of SU(2)xSU(2) invariant Kaluza-Klein modes. The five-dimensional model is a gauged N=4 supergravity with three vector multiplets, which incorporates various conifold solutions and is suitable for the study of their dynamics. By analysing the scalar potential we find a family of new non-supersymmetric AdS_5 extrema interpolating between a solution obtained long ago by Romans and a solution employing an Einstein metric on T^{1,1} different from the standard one. Finally, we discuss some simple consistent subtruncations preserving N=2 supersymmetry. One of them is compatible with the inclusion of smeared D7-branes.

  7. Vortex breakdown in a truncated conical bioreactor

    Science.gov (United States)

    Balci, Adnan; Brøns, Morten; Herrada, Miguel A.; Shtern, Vladimir N.

    2015-12-01

    This numerical study explains the eddy formation and disappearance in a slow steady axisymmetric air-water flow in a vertical truncated conical container, driven by the rotating top disk. Numerous topological metamorphoses occur as the water height, Hw, and the bottom-sidewall angle, α, vary. It is found that the sidewall convergence (divergence) from the top to the bottom stimulates (suppresses) the development of vortex breakdown (VB) in both water and air. At α = 60°, the flow topology changes eighteen times as Hw varies. The changes are due to (a) competing effects of AMF (the air meridional flow) and swirl, which drive meridional motions of opposite directions in water, and (b) feedback of water flow on AMF. For small Hw, the AMF effect dominates. As Hw increases, the swirl effect dominates and causes VB. The water flow feedback produces and modifies air eddies. The results are of fundamental interest and can be relevant for aerial bioreactors.

  8. Entanglement entropy from the truncated conformal space

    Directory of Open Access Journals (Sweden)

    T. Palmai

    2016-08-01

    Full Text Available A new numerical approach to entanglement entropies of the Rényi type is proposed for one-dimensional quantum field theories. The method extends the truncated conformal spectrum approach and we will demonstrate that it is especially suited to study the crossover from massless to massive behavior when the subsystem size is comparable to the correlation length. We apply it to different deformations of massless free fermions, corresponding to the scaling limit of the Ising model in transverse and longitudinal fields. For massive free fermions the exactly known crossover function is reproduced already in very small system sizes. The new method treats ground states and excited states on the same footing, and the applicability for excited states is illustrated by reproducing Rényi entropies of low-lying states in the transverse field Ising model.

  9. A triple gene mutant of BoHV-1 administered intranasally in lambs replicates efficiently in the nasal epithelium and induces neutralizing antibody

    Science.gov (United States)

    Bovine herpes virus 1 (BoHV-1) causes respiratory infections and abortions in cattle, and is an important component of Bovine respiratory disease complex (BRDC). BoHV-1 has also been isolated from sheep with respiratory disorder. Experimentally, sheep and goats are infected productively with BoHV-1...

  10. Hochschild homology, global dimension, and truncated oriented cycles

    CERN Document Server

    Han, Yang

    2010-01-01

    It is shown that a bounded quiver algebra having a 2-truncated oriented cycle is of infinite Hochschild homology dimension and global dimension, which generalizes a result of Solotar and Vigu\\'{e}-Poirrier to nonlocal ungraded algebras having a 2-truncated oriented cycle of arbitrary length. Therefore, a bounded quiver algebra of finite global dimension has no 2-truncated oriented cycles. Note that the well-known "no loops conjecture", which has been proved to be true already, says that a bounded quiver algebra of finite global dimension has no loops, i.e., truncated oriented cycles of length 1. Moreover, it is shown that a monomial algebra having a truncated oriented cycle is of infinite Hochschild homology dimension and global dimension. Consequently, a monomial algebra of finite global dimension has no truncated oriented cycles.

  11. Exact and truncated Coriolis coupling calculations for the S(1D)+HD reaction employing the ground adiabatic electronic state.

    Science.gov (United States)

    Yang, Huan; Han, Keli; Schatz, George C; Smith, Sean C; Hankel, Marlies

    2010-10-21

    We present exact quantum differential cross sections and exact and estimated integral cross sections and branching ratios for the title reaction. We employ a time-dependent wavepacket method as implemented in the DIFFREALWAVE code including all Coriolis couplings and also an adapted DIFFREALWAVE code where the helicity quantum number and with this the Coriolis couplings have been truncated. Our exact differential cross sections at 0.453 eV total energy, one of the experimental energies, show good agreement with the experimental results for one of the product channels. While the truncated calculation present a significant reduction in the computational effort needed they overestimate the exact integral cross sections.

  12. Truncations driven by constraints: consistency and conditions for correct upliftings

    CERN Document Server

    Pons, J M; Pons, Josep M.; Talavera, Pere

    2004-01-01

    We discuss the mechanism of truncations driven by the imposition of constraints. We show how the consistency of such truncations is controlled, and give general theorems that establish conditions for the correct uplifting of solutions. We show in some particular examples how one can get correct upliftings from 7d supergravities to 10d type IIB supergravity, even in cases when the truncation is not initially consistent by its own.

  13. Molecular mechanism of voltage sensing in voltage-gated proton channels

    Science.gov (United States)

    Rebolledo, Santiago; Perez, Marta E.

    2013-01-01

    Voltage-gated proton (Hv) channels play an essential role in phagocytic cells by generating a hyperpolarizing proton current that electrically compensates for the depolarizing current generated by the NADPH oxidase during the respiratory burst, thereby ensuring a sustained production of reactive oxygen species by the NADPH oxidase in phagocytes to neutralize engulfed bacteria. Despite the importance of the voltage-dependent Hv current, it is at present unclear which residues in Hv channels are responsible for the voltage activation. Here we show that individual neutralizations of three charged residues in the fourth transmembrane domain, S4, all reduce the voltage dependence of activation. In addition, we show that the middle S4 charged residue moves from a position accessible from the cytosolic solution to a position accessible from the extracellular solution, suggesting that this residue moves across most of the membrane electric field during voltage activation of Hv channels. Our results show for the first time that the charge movement of these three S4 charges accounts for almost all of the measured gating charge in Hv channels. PMID:23401575

  14. Hydrophobic plug functions as a gate in voltage-gated proton channels.

    Science.gov (United States)

    Chamberlin, Adam; Qiu, Feng; Rebolledo, Santiago; Wang, Yibo; Noskov, Sergei Y; Larsson, H Peter

    2014-01-14

    Voltage-gated proton (Hv1) channels play important roles in the respiratory burst, in pH regulation, in spermatozoa, in apoptosis, and in cancer metastasis. Unlike other voltage-gated cation channels, the Hv1 channel lacks a centrally located pore formed by the assembly of subunits. Instead, the proton permeation pathway in the Hv1 channel is within the voltage-sensing domain of each subunit. The gating mechanism of this pathway is still unclear. Mutagenic and fluorescence studies suggest that the fourth transmembrane (TM) segment (S4) functions as a voltage sensor and that there is an outward movement of S4 during channel activation. Using thermodynamic mutant cycle analysis, we find that the conserved positively charged residues in S4 are stabilized by countercharges in the other TM segments both in the closed and open states. We constructed models of both the closed and open states of Hv1 channels that are consistent with the mutant cycle analysis. These structural models suggest that electrostatic interactions between TM segments in the closed state pull hydrophobic residues together to form a hydrophobic plug in the center of the voltage-sensing domain. Outward S4 movement during channel activation induces conformational changes that remove this hydrophobic plug and instead insert protonatable residues in the center of the channel that, together with water molecules, can form a hydrogen bond chain across the channel for proton permeation. This suggests that salt bridge networks and the hydrophobic plug function as the gate in Hv1 channels and that outward movement of S4 leads to the opening of this gate.

  15. The Hv NAC6 transcription factor: a positive regulator of penetration resistance in barley and Arabidopsis

    DEFF Research Database (Denmark)

    Jensen, Michael Krogh; Rung, Jesper Henrik; Gregersen, Per Langkjaer

    2007-01-01

    Pathogens induce the expression of many genes encoding plant transcription factors, though specific knowledge of the biological function of individual transcription factors remains scarce. NAC transcription factors are encoded in plants by a gene family with proposed functions in both abiotic...... and biotic stress adaptation, as well as in developmental processes. In this paper, we provide convincing evidence that a barley NAC transcription factor has a direct role in regulating basal defence. The gene transcript was isolated by differential display from barley leaves infected with the biotrophic...... powdery mildew fungus, Blumeria graminis f.sp. hordei (Bgh). The full-length cDNA clone was obtained using 5'-RACE and termed HvNAC6, due to its high similarity to the rice homologue, OsNAC6. Gene silencing of HvNAC6 during Bgh inoculation compromises penetration resistance in barley epidermal cells...

  16. Some Properties of Multiplicative Hv-Rings of Polynomials over Multiplicative Hyperrings

    Directory of Open Access Journals (Sweden)

    Utpal Dasgupta

    2014-01-01

    Full Text Available The set of all polynomials Rx, over a multiplicative hyperring R, +, ·, form a commutative group with respect to the component-wise addition (+ of the polynomials. For polynomials f, g in Rx, f*g is a set of polynomials whose k+1th components k∈N∪0 are chosen from the set ∑i+j=kai·bj, where ai and bj are the i+1th and the j+1th components of f and g, respectively. A multiplicative hyperring is polynomially structured if the hyperstructure Rx, +, * is a multiplicative Hv-ring. The purpose of the paper is to study the properties of the multiplicative Hv-ring Rx, +, *, corresponding to those of a polynomially structured multiplicative hyperring R.

  17. HV substation earth grid commissioning using current injection test (CIT method: Worst case scenario determination

    Directory of Open Access Journals (Sweden)

    M. Nassereddine, J. Rizk, M. Nagrial, A. Hellany

    2015-01-01

    Full Text Available The existing of the High Voltage (HV infrastructure creates a unique set of safety circumstances. The earthing system is one of the main elements to mitigate any unsafe conditions. Commissioning the earth grid certifies that the implemented system fulfills to the pertinent necessities. This paper endeavors to present vital information on how to perform the earth grid commissioning of an HV infrastructure. This paper will minutiae the minimum needs to guarantee the test will symbolize the actual fault case that the design was based on. A flow chart diagram is established and presented in this paper, which allows the determination of the most suitable injection route. The results of the case study are discussed, and the results are shown in this paper.

  18. Grayscale Image Compression Based on Min Max Block Truncating Coding

    Directory of Open Access Journals (Sweden)

    Hilal Almarabeh

    2011-11-01

    Full Text Available This paper presents an image compression techniques based on block truncating coding. In this work, a min max block truncating coding (MM_BTC is presented for grayscale image compression relies on applying dividing image into non-overlapping blocks. MM_BTC differ from other block truncating coding such as block truncating coding (BTC in the way of selecting the quantization level in order to remove redundancy. Objectives measures such as: Bit Rate (BR, Mean Square Error (MSE, Peak Signal to Noise Ratio (PSNR, and Redundancy (R, were used to present a detailed evaluation of MM_BTC of image quality.

  19. Crystal structures of barley thioredoxin h isoforms HvTrxh1 and HvTrxh2 reveal features involved in protein recognition and possibly in discriminating the isoform specificity

    DEFF Research Database (Denmark)

    Maeda, Kenji; Hägglund, Per; Finnie, Christine;

    2008-01-01

    H-type thioredoxins (Trxs) constitute a particularly large Trx sub-group in higher plants. Here, the crystal structures are determined for the two barley Trx h isoforms, HvTrxh1 and HvTrxh2, in the partially radiation-reduced state to resolutions of 1.7 angstrom, and for HvTrxh2 in the oxidized...... state to 2.0 angstrom. The two Trxs have a sequence identity of 51% and highly similar fold and active-site architecture. Interestingly, the four independent molecules in the crystals of HvTrxh1 form two relatively large and essentially identical protein-protein interfaces. In each interface, a loop......) of the bound loop segment in the proximity of the Cys40 thiol. The interaction involves three characteristic backbone-backbone hydrogen bonds in an antiparallel beta-sheet-like arrangement, similar to the arrangement observed in the structure of an engineered, covalently bound complex between Trx...

  20. Radiation Hard GaNFET High Voltage Multiplexing (HV Mux) for the ATLAS Upgrade Silicon Strip Tracker

    CERN Document Server

    Lynn, David; The ATLAS collaboration

    2017-01-01

    The outer radii of the inner tracker (ITk) for the Phase-II Upgrade of the ATLAS experiment will consist of groups of silicon strip sensors mounted on common support structures. Lack of space creates a need to remotely disable a failing sensor from the common HV bus. We have developed circuitry consisting of a GaNFET transistor and a HV Multiplier circuit to disable a failed sensor. We will present two variants of the HV Mux circuitry and show irradiation results on individual components with an emphasis on the GaNFET results. We will also discuss the reliability of the HV Mux circuitry and show plans to ensure reliability during production.

  1. The barley HvNAC6 transcription factor affects ABA accumulation and promotes basal resistance against powdery mildew

    DEFF Research Database (Denmark)

    Chen, Yan-Jun; Perera, Venura; Wagner, Michael

    2013-01-01

    a transgenic approach to constitutively silence HvNAC6 expression, using RNA interference (RNAi), to investigate the in vivo functions of HvNAC6 in basal resistance responses in barley in relation to the phytohormone ABA. The HvNAC6 RNAi plants displayed reduced HvNAC6 transcript levels and were more...... susceptible to Bgh than wild-type plants. Application of exogenous ABA increased basal resistance against Bgh in wild-type plants, but not in HvNAC6 RNAi plants, suggesting that ABA is a positive regulator of basal resistance which depends on HvNAC6. Silencing of HvNAC6 expression altered the light....../dark rhythm of ABA levels which were, however, not influenced by Bgh inoculation. The expression of the two ABA biosynthetic genes HvNCED1 and HvNCED2 was compromised, and transcript levels of the ABA conjugating HvBG7 enzyme were elevated in the HvNAC6 RNAi lines, but this effect was not clearly associated...

  2. Vortex breakdown in a truncated conical bioreactor

    Energy Technology Data Exchange (ETDEWEB)

    Balci, Adnan; Brøns, Morten [DTU Compute, Technical University of Denmark, DK-2800 Kgs. Lyngby (Denmark); Herrada, Miguel A [E.S.I, Universidad de Sevilla, Camino de los Descubrimientos s/n, E-41092 (Spain); Shtern, Vladimir N, E-mail: mobr@dtu.dk [Shtern Research and Consulting, Houston, TX 77096 (United States)

    2015-12-15

    This numerical study explains the eddy formation and disappearance in a slow steady axisymmetric air–water flow in a vertical truncated conical container, driven by the rotating top disk. Numerous topological metamorphoses occur as the water height, H{sub w}, and the bottom-sidewall angle, α, vary. It is found that the sidewall convergence (divergence) from the top to the bottom stimulates (suppresses) the development of vortex breakdown (VB) in both water and air. At α = 60°, the flow topology changes eighteen times as H{sub w} varies. The changes are due to (a) competing effects of AMF (the air meridional flow) and swirl, which drive meridional motions of opposite directions in water, and (b) feedback of water flow on AMF. For small H{sub w}, the AMF effect dominates. As H{sub w} increases, the swirl effect dominates and causes VB. The water flow feedback produces and modifies air eddies. The results are of fundamental interest and can be relevant for aerial bioreactors. (paper)

  3. Understanding biases when fitting disk truncations

    Science.gov (United States)

    Cardiel, Nicolás; Marino, Raffaella A.; Pascual, Sergio; Ceballos, M. Teresa; Gil de Paz, Armando; Sánchez, Sebastián F.

    2017-03-01

    Truncations in the stellar population at the edges of disk galaxies are thought to be a common morphological feature (e.g., Erwin et al. 2005; and more recently Marino et al. 2016). In fact, using imaging data from the SDSS, Pohlen & Trujillo (2006) showed that only ~ 10% of face-on to intermediate inclined, nearby, late-type (Sb-Sdm) spiral galaxies have a normal/standard purely exponential disk down to the noise limit. In situations like these, the simultaneous fit of two lines, joined or not at an intermediate point (the break radius), constitutes a natural step towards the modelling of radial variation in surface brightness, metallicity, or any other relevant parameter. This work shows the results of simple simulations in which the simultaneous fit to two joined lines is compared to the simultaneous fit of two independent lines (i.e., two lines that do not necessarily coincide at an intermediate point), and also to the traditional single ordinary least squares fit. These simulations reveal some biases that should be taken into account when facing these kind of fitting procedures.

  4. BCFT moduli space in level truncation

    Science.gov (United States)

    Kudrna, Matěj; Maccaferri, Carlo

    2016-04-01

    We propose a new non-perturbative method to search for marginal deformations in level truncated open string field theory. Instead of studying the flatness of the effective potential for the marginal field (which is not expected to give a one-to-one parametrization of the BCFT moduli space), we identify a new non-universal branch of the tachyon potential which, from known analytic examples, is expected to parametrize the marginal flow in a much larger region of the BCFT moduli space. By a level 18 computation in Siegel gauge we find an increasingly flat effective potential in the non-universal sector, connected to the perturbative vacuum and we confirm that the coefficient of the marginal field ( λ SFT) has a maximum compatible with the value where the solutions stop existing in the standard Sen-Zwiebach approach. At the maximal reachable level the effective potential still deviates from flatness for large values of the tachyon, but the Ellwood invariants stay close to the correct BCFT values on the whole branch and the full periodic moduli space of the cosine deformation is covered.

  5. BCFT moduli space in level truncation

    CERN Document Server

    Kudrna, Matej

    2016-01-01

    We propose a new non-perturbative method to search for marginal deformations in level truncated open string field theory. Instead of studying the flatness of the effective potential for the marginal field (which is not expected to give a one-to-one parametrization of the BCFT moduli space), we identify a new non-universal branch of the tachyon potential which, from known analytic examples, is expected to parametrize the marginal flow in a much larger region of the BCFT moduli space. By a level 18 computation in Siegel gauge, we find an increasingly flat effective potential in the non-universal sector, connected to the perturbative vacuum and we confirm that the coefficient of the marginal field (lambda_SFT) has a maximum compatible with the value where the solutions stop existing in the standard Sen-Zwiebach approach. At the maximal reachable level, the effective potential still deviates from flatness for large values of the tachyon, but the Ellwood invariants stay close to the correct BCFT values on the whol...

  6. Identification of Chelonid herpesvirus 5 (ChHV5) in endangered green turtles (Chelonia mydas) with fibropapillomatosis in Asia

    Science.gov (United States)

    Li, Tsung-Hsien; Hsu, Wei-Li; Lan, Yu-Ching; Balazs, George H.; Work, Thierry M.; Tseng, Cheng-Tsung; Chang, Chao-Chin

    2017-01-01

    Fibropapillomatosis (FP), a debilitating tumor disease of sea turtles, was first identified in green turtles [Chelonia mydas (Linnaeus, 1758)] in Florida in 1938. In recent decades, FP has been observed globally and is an emerging panzootic disease in sea turtles. However, few reports of FP in Asia exist. Here, we provide the first evidence of Chelonid herpesvirus 5 (ChHV5) DNA associated with FP in endangered green turtles from Taiwan, through molecular characterization, phylogenetic analysis, and histopathological examination. In our study, ChHV5 was successfully detected by PCR in the FP tumor lesions of green turtles. The sequences were found to be consistent with those of tumor-inducing viruses shown to affect sea turtles in the other parts of the world. ChHV5 RNA from the FP tissues was further detected by RT-PCR, indicating active replication of the viruses inside FP tumors. In addition to the molecular evidence of ChHV5 in FP, epidermal intranuclear inclusions were identified in tumor lesions upon histopathological examination. This further suggests that ChHV5 should be in a transcriptionally active (i.e., non-latent) state in FP tumors of affected green turtles. The phylogenetic tree revealed that ChHV5 from the green turtles in Taiwan were closest to the ChHV5 from Hawaii, Puerto Rico, and Sao Tome. For conservation of endangered sea turtles, ChHV5 should be considered an emerging virus, which threatens sea turtles in marine waters in Asia.

  7. Efficient Generation of Truncated Bessel Beams using Cylindrical Waveguides

    Science.gov (United States)

    Ilchenko, Vladimir S.; Mohageg, Makan; Savchenkov, Anatoliy A.; Matsko, Andrey B.; Maleki, Lute

    2007-01-01

    In this paper we address efficient conversion between a Gaussian beam (a truncated plane wave) and a truncated Bessel beam of agiven order, using cylindrical optical waveguides and whispering gallery mode resonators. Utilizing a generator based on waveguides combined with whispering gallery mode resonators, we have realized Bessel beams of the order of 200 with a conversion efficiency exceeding 10 %.

  8. Truncation scheme of time-dependent density-matrix approach

    Energy Technology Data Exchange (ETDEWEB)

    Tohyama, Mitsuru [Kyorin University School of Medicine, Mitaka, Tokyo (Japan); Schuck, Peter [Universite Paris-Sud, Institut de Physique Nucleaire, IN2P3-CNRS, Orsay Cedex (France); Laboratoire de Physique et de Modelisation des Milieux Condenses et Universite Joseph Fourier, Grenoble Cedex 9 (France)

    2014-04-15

    A truncation scheme of the Bogoliubov-Born-Green-Kirkwood-Yvon hierarchy for reduced density matrices, where a three-body density matrix is approximated by the antisymmetrized products of two-body density matrices, is proposed. This truncation scheme is tested for three model Hamiltonians. It is shown that the obtained results are in good agreement with the exact solutions. (orig.)

  9. Application of a truncated normal failure distribution in reliability testing

    Science.gov (United States)

    Groves, C., Jr.

    1968-01-01

    Statistical truncated normal distribution function is applied as a time-to-failure distribution function in equipment reliability estimations. Age-dependent characteristics of the truncated function provide a basis for formulating a system of high-reliability testing that effectively merges statistical, engineering, and cost considerations.

  10. ON TRUNCATION ERROR BOUND FOR MULTIDIMENSIONAL SAMPLING EXPANSION LAPLACE TRANSFORM

    Institute of Scientific and Technical Information of China (English)

    Long Jingfan; Fang Gensun

    2004-01-01

    The truncation error associated with a given sampling representation is defined as the difference between the signal and an approximating sumutilizing a finite number of terms. In this paper we give uniform bound for truncation error of bandlimited functions in the n dimensional Lebesgue space Lp(Rn) associated with multidimensional Shannon sampling representation.

  11. Assumptions regarding right censoring in the presence of left truncation.

    Science.gov (United States)

    Qian, Jing; Betensky, Rebecca A

    2014-04-01

    Clinical studies using complex sampling often involve both truncation and censoring, where there are options for the assumptions of independence of censoring and event and for the relationship between censoring and truncation. In this paper, we clarify these choices, show certain equivalences, and provide examples.

  12. Isolation and characterization of BoHV-1 from seropositive cows after inducing artificial stress in West Bengal, India.

    Science.gov (United States)

    Saha, Tapabrata; Guha, Chanchal; Chakraborty, Dhruba; Pal, Biplab; Biswas, Ujjwal; Chatterjee, Amaresh; Koenig, Patricia; Beer, Martin

    2013-08-01

    Infectious Bovine Rhinotracheitis (BoHV-1) is the most important emerging disease of cattle in India. With an aim to reactivate BoHV-1 from latently infected sero-positive cattle for molecular characteristics of the isolates prevalent in tropical and sub-tropical countries like India and further epidemiological investigations on IBR infections this study had been conducted. Artificial stress with dexamethasone at the dose rate of 0.1 mg kg(-1) body weight for 5 consecutive days was induced in BoHV-1 sero-positive cows. Then isolation from nasal swabs was attempted in Madin Darby Bovine Kidney (MDBK) cell line to find out the prevalent strain in India. The virus was isolated from all the three cows. All the three isolates were typed as BoHV-1.2 (Strain India 4, India 5 and India 6). The reactivation obtained in this study with dexamethasone suggests the usefulness of BoHV-1 cow latency model for epidemiological investigations on BoHV-1 infections in tropical and sub-tropical countries like India, Pakistan etc.

  13. Voltage-gated proton channel is expressed on phagosomes.

    Science.gov (United States)

    Okochi, Yoshifumi; Sasaki, Mari; Iwasaki, Hirohide; Okamura, Yasushi

    2009-05-01

    Voltage-gated proton channel has been suggested to help NADPH oxidase activity during respiratory burst of phagocytes through its activities of compensating charge imbalance and regulation of pH. In phagocytes, robust production of reactive oxygen species occurs in closed membrane compartments, which are called phagosomes. However, direct evidence for the presence of voltage-gated proton channels in phagosome has been lacking. In this study, the expression of voltage-gated proton channels was studied by Western blot with the antibody specific to the voltage-sensor domain protein, VSOP/Hv1, that has recently been identified as the molecular correlate for the voltage-gated proton channel. Phagosomal membranes of neutrophils contain VSOP/Hv1 in accordance with subunits of NADPH oxidases, gp91, p22, p47 and p67. Superoxide anion production upon PMA activation was significantly reduced in neutrophils from VSOP/Hv1 knockout mice. These are consistent with the idea that voltage-gated proton channels help NADPH oxidase in phagocytes to produce reactive oxygen species.

  14. BoHV-4-Based Vector Single Heterologous Antigen Delivery Protects STAT1(-/- Mice from Monkeypoxvirus Lethal Challenge.

    Directory of Open Access Journals (Sweden)

    Valentina Franceschi

    2015-06-01

    Full Text Available Monkeypox virus (MPXV is the etiological agent of human (MPX. It is an emerging orthopoxvirus zoonosis in the tropical rain forest of Africa and is endemic in the Congo-basin and sporadic in West Africa; it remains a tropical neglected disease of persons in impoverished rural areas. Interaction of the human population with wildlife increases human infection with MPX virus (MPXV, and infection from human to human is possible. Smallpox vaccination provides good cross-protection against MPX; however, the vaccination campaign ended in Africa in 1980, meaning that a large proportion of the population is currently unprotected against MPXV infection. Disease control hinges on deterring zoonotic exposure to the virus and, barring that, interrupting person-to-person spread. However, there are no FDA-approved therapies against MPX, and current vaccines are limited due to safety concerns. For this reason, new studies on pathogenesis, prophylaxis and therapeutics are still of great interest, not only for the scientific community but also for the governments concerned that MPXV could be used as a bioterror agent. In the present study, a new vaccination strategy approach based on three recombinant bovine herpesvirus 4 (BoHV-4 vectors, each expressing different MPXV glycoproteins, A29L, M1R and B6R were investigated in terms of protection from a lethal MPXV challenge in STAT1 knockout mice. BoHV-4-A-CMV-A29LgD106ΔTK, BoHV-4-A-EF1α-M1RgD106ΔTK and BoHV-4-A-EF1α-B6RgD106ΔTK were successfully constructed by recombineering, and their capacity to express their transgene was demonstrated. A small challenge study was performed, and all three recombinant BoHV-4 appeared safe (no weight-loss or obvious adverse events following intraperitoneal administration. Further, BoHV-4-A-EF1α-M1RgD106ΔTK alone or in combination with BoHV-4-A-CMV-A29LgD106ΔTK and BoHV-4-A-EF1α-B6RgD106ΔTK, was shown to be able to protect, 100% alone and 80% in combination, STAT1(-/- mice

  15. Cell layer-specific distribution of transiently expressed barley ESCRT-III component HvVPS60 in developing barley endosperm.

    Science.gov (United States)

    Hilscher, Julia; Kapusi, Eszter; Stoger, Eva; Ibl, Verena

    2016-01-01

    The significance of the endosomal sorting complexes required for transport (ESCRT)-III in cereal endosperm has been shown by the identification of the recessive mutant supernumerary aleurone layer1 (SAL1) in maize. ESCRT-III is indispensable in the final membrane fission step during biogenesis of multivesicular bodies (MVBs), responsible for protein sorting to vacuoles and to the cell surface. Here, we annotated barley ESCRT-III members in the (model) crop Hordeum vulgare and show that all identified members are expressed in developing barley endosperm. We used fluorescently tagged core ESCRT-III members HvSNF7a/CHMP4 and HvVPS24/CHMP3 and the associated ESCRT-III component HvVPS60a/CHMP5 for transient localization studies in barley endosperm. In vivo confocal microscopic analyses show that the localization of recombinantly expressed HvSNF7a, HvVPS24 and HvVPS60a differs within barley endosperm. Whereas HvSNF7a induces large agglomerations, HvVPS24 shows mainly cytosolic localization in aleurone and subaleurone. In contrast, HvVPS60a localizes strongly at the plasma membrane in aleurone. In subaleurone, HvVPS60a was found to a lesser extent at the plasma membrane and at vacuolar membranes. These results indicate that the steady-state association of ESCRT-III may be influenced by cell layer-specific protein deposition or trafficking and remodelling of the endomembrane system in endosperm. We show that sorting of an artificially mono-ubiquitinated Arabidopsis plasma membrane protein is inhibited by HvVPS60a in aleurone. The involvement of HvVPS60a in different cell layer-specific trafficking pathways, reflected by localization of HvVPS60a at the plasma membrane in aleurone and at the PSV membrane in subaleurone, is discussed.

  16. MuPix7 - A fast monolithic HV-CMOS pixel chip for Mu3e

    CERN Document Server

    Augustin, H; Dittmeier, S; Hammerich, J; Hartenstein, U; Huang, Q; Huth, L; Immig, D; Kozlinskiy, A; Aeschbacher, F Meier; Perić, I; Perrevoort, A -K; Schöning, A; Shrestha, S; Sorokin, I; Tyukin, A; Bruch, D vom; Wauters, F; Wiedner, D; Zimmermann, M

    2016-01-01

    The MuPix7 chip is a monolithic HV-CMOS pixel chip, thinned down to 50 \\mu m. It provides continuous self-triggered, non-shuttered readout at rates up to 30 Mhits/chip of 3x3 mm^2 active area and a pixel size of 103x80 \\mu m^2. The hit efficiency depends on the chosen working point. Settings with a power consumption of 300 mW/cm^2 allow for a hit efficiency >99.5%. A time resolution of 14.2 ns (Gaussian sigma) is achieved. Latest results from 2016 test beam campaigns are shown.

  17. Mapping the geophysical bedrock of the Moesian Platform using H/V ratios and borehole data.

    Science.gov (United States)

    Florinela Manea, Elena; Michel, Clotaire; Fäh, Donat; Ortanza Cioflan, Carmen

    2016-04-01

    The strong effects at long periods observed in the extra-Carpathian area of Romania during large Vrancea intermediate-depth earthquakes were explained by the influence of both source mechanism and mechanical properties of the geological structure. Complex basin geometry and the low seismic velocities of the sediments are the primary responsible for the large amplification and long duration of the seismic records from the extra-Carpathian area during intermediate-depth earthquakes. The aim of this study is to map the geophysical bedrock of this area correlating and interpolating the results obtained from local resonance phenomena evaluation with the available surface geological data. The site was investigated through the computation of H/V spectral ratios from three-directional single station measurements of ambient vibration. The first step was to estimate the depth of the geophysical bedrock at all the Romanian seismic stations located in the extra-Carpathian area (velocity sensors) using the fundamental frequency retrieved from the H/V curves. In the second stage of the study all the relevant peaks from the H/V curves were interpreted in consonance with the available information of the geology. The geological data were obtained from the database developed in the national BIGSEES project by National Institute of Earth Physics. In this database are integrated all the geological, geophysical data from all the past projects, contracts, studies (as refraction, reflexion, etc.), geotechnical drillings and other information publicly available. The mapping of the geophysical bedrock was done interpolating the geological database and information gathered/resulted from H/V using a geographical informational system(GIS). The geology of this area displays very complex features as outcrops in small zones/lines/ near the Danube and then is gradually dipping to about 2 km depth in the N-NE. The depth of the bedrock is (nearly) constant around 100 m depth on the right side of

  18. A Monolithic active pixel sensor for ionizing radiation using a 180nm HV-SOI process

    OpenAIRE

    Hemperek, Tomasz; Kishishita, Tetsuichi; Krüger, Hans; Wermes, Norbert

    2014-01-01

    An improved SOI-MAPS (Silicon On Insulator Monolithic Active Pixel Sensor) for ionizing radiation based on thick-film High Voltage SOI technology (HV-SOI) has been developed. Similar to existing Fully Depleted SOI-based (FD-SOI) MAPS, a buried silicon oxide inter-dielectric (BOX) layer is used to separate the CMOS electronics from the handle wafer which is used as a depleted charge collection layer. FD-SOI MAPS suffer from radiation damage such as transistor threshold voltage shifts due to ch...

  19. Truncation Effects in Monte Carlo Renormalization Group Improved Lattice Actions

    CERN Document Server

    Takaishi, T; Forcrand, Ph. de

    1998-01-01

    We study truncation effects in the SU(3) gauge actions obtained by the Monte Carlo renormalization group method. By measuring the heavy quark potential we find that the truncation effects in the actions coarsen the lattice by 40-50 % from the original blocked lattice. On the other hand, we find that rotational symmetry of the heavy quark potentials is well recovered on such coarse lattices, which may indicate that rotational symmetry breaking terms are easily cancelled out by adding a short distance operator. We also discuss the possibility of reducing truncation effects.

  20. Unitary equivalence to a truncated Toeplitz operator: analytic symbols

    CERN Document Server

    Garcia, Stephan Ramon; Ross, William T

    2010-01-01

    Unlike Toeplitz operators on $H^2$, truncated Toeplitz operators do not have a natural matricial characterization. Consequently, these operators are difficult to study numerically. In this note we provide criteria for a matrix with distinct eigenvalues to be unitarily equivalent to a truncated Toeplitz operator having an analytic symbol. This test is constructive and we illustrate it with several examples. As a byproduct, we also prove that every complex symmetric operator on a Hilbert space of dimension $\\leq 3$ is unitarily equivalent to a direct sum of truncated Toeplitz operators.

  1. Evaluation of local site effect in the western side of the Suez Canal area by applying H/V and MASW techniques

    Science.gov (United States)

    Mohamed, Emad K.; Shokry, M. M. F.; Hassoup, Awad; Helal, A. M. A.

    2016-11-01

    The soft sediments are one of the most important factors responsible for the amplification of the seismic ground motion in an area of study. Three components, single-station microtremor measurements were performed at 61 sites along the Suez Canal to estimate the fundamental frequencies of the soil and corresponding H/V amplitude ratios by using the horizontal-to-vertical spectral ratio (HVSR) method. We have applied the investigations of the shear wave velocity for supplementing the existing seismic microzonation of the Suez Canal. The multichannel analysis of surface wave (MASW) tests were done along the Suez Canal in the three cities, Suez, Ismailia, and Port Said using 24 channels digital engineering seismograph with 4.5 Hz geophones from September 2014 to January 2015 to get the shear wave velocity VS30. The SeisImager/SW software was used for analyzing the data, and 1D-shear wave velocity model have achieved for each site. The HVSR curves show that the fundamental frequency values are ranging from 0.57 to 1.08 Hz, and H/V amplitude ratios are ranging from 4.05 to 6.46. The average values of VS30 are (548, 301), (241, 319), (194, 110, 238) for Suez, Ismailia, and Port Said respectively. The average of shear wave velocity up to 30 m depth is estimated and used for site classification based on the National Earthquake Hazard Reduction Program (NEHRP) classification. The majority of the sites was classified as Class D (stiff soil) except one site at Port Said city is classified as Class E (soft soils), and another site in the Suez city is classified as Class C (hard rock).

  2. The Super D9-Brane and its Truncations

    CERN Document Server

    Bergshoeff, E A; Janssen, B; Ortín, Tomas; Bergshoeff, Eric; Roo, Mees de; Janssen, Bert; Ortin, Tomas

    1999-01-01

    We consider two inequivalent truncations of the super D9--brane: the ``Heterotic'' and the ``Type I'' truncation. Both of them lead to an N=1 nonlinear supersymmetrization of the D=10 cosmological constant. The propagating degrees of freedom in the Heterotic and Type I truncation are given by the components of a D=10 vector multiplet and a single Majorana-Weyl spinor, respectively. As a by-product we find that, after the Type I truncation, the Ramond-Ramond super ten-form provides an interesting reformulation of the Volkov-Akulov action. These results can be extended to all dimensions in which spacetime filling D-branes exist, i.e. D=3,4,6 and 10.

  3. Adaptive bit truncation and compensation method for EZW image coding

    Science.gov (United States)

    Dai, Sheng-Kui; Zhu, Guangxi; Wang, Yao

    2003-09-01

    The embedded zero-tree wavelet algorithm (EZW) is widely adopted to compress wavelet coefficients of images with the property that the bits stream can be truncated and produced anywhere. The lower bit plane of the wavelet coefficents is verified to be less important than the higher bit plane. Therefore it can be truncated and not encoded. Based on experiments, a generalized function, which can provide a glancing guide for EZW encoder to intelligently decide the number of low bit plane to be truncated, is deduced in this paper. In the EZW decoder, a simple method is presented to compensate for the truncated wavelet coefficients, and finally it can surprisingly enhance the quality of reconstructed image and spend scarcely any additional cost at the same time.

  4. Truncated Autoinducing Peptides as Antagonists of Staphylococcus lugdunensis Quorum Sensing.

    Science.gov (United States)

    Gordon, Christopher P; Olson, Shondra D; Lister, Jessica L; Kavanaugh, Jeffrey S; Horswill, Alexander R

    2016-10-13

    Competitive quorum sensing (QS) antagonism offers a novel strategy for attenuating current multidrug resistant staphylococcal infections. To this end, a series of 10 truncated analogues based on the parent autoinducing peptides (AIPs) of Staphylococcus lugdunensis (groups I and II) and Staphylococcus epidermidis (groups I-III) were sequentially assessed against a newly developed Staphylococcus lugdunensis group I QS reporter strain. The truncated analogues based upon Staphylococcus lugdunensis AIP-1 (1) and AIP-2 (2) displayed respective IC50 values of 0.2 ± 0.01 μM and 0.3 ± 0.01 μM, while the truncated analogue of the Staphylococcus epidermidis AIP-1 (3) elicited an IC50 value of 2.7 ± 0.1 μM. These findings demonstrate the potential of cognate and "crosstalk" competitive quorum sensing inhibition using truncated AIPs as a means of attenuating staphylococcal infections in species beyond Staphylococcus aureus.

  5. Truncated horseshoes and formal languages in chaotic scattering

    CERN Document Server

    Troll, G

    1993-01-01

    Abstract: In this paper we study parameter families of truncated horseshoes as models of multiscattering systems which show a transition to chaos without losing hyperbolicity, so that the topological features of the transition are completely describable by a parameterized family of symbolic dynamics. At a fixed parameter value the corresponding horseshoe represents the set of orbits trapped in the scattering region. The bifurcations are a pure boundary effect and no other bifurcations such as saddle center bifurcations occur in this transition scenario. Truncated horseshoes actually arise in concrete potential scattering under suitable conditions. It is shown that a simple scattering model introduced earlier can realize this scenario in a certain parameter range (the "truncated sawshoe") . For this purpose, we solve the inverse scattering problem of finding the central potential associated to the sawshoe model. Furthermore, we review classification schemes for the transition to chaos of truncated horseshoes o...

  6. Measuring A Truncated Disk in Aquila X-1

    CERN Document Server

    King, Ashley L; Miller, Jon M; Chenevez, Jerome; Barret, Didier; Boggs, Steven E; Chakrabarty, Deepto; Christensen, Finn E; Craig, William W; Furst, Felix; Hailey, Charles J; Harrison, Fiona A; Parker, Michael L; Stern, Daniel; Romano, Patrizia; Walton, Dominic J; Zhang, William W

    2016-01-01

    We present NuSTAR and Swift observations of the neutron star Aquila X-1 during the peak of its July 2014 outburst. The spectrum is soft with strong evidence for a broad Fe K\\alpha line. Modeled with a relativistically broadened reflection model, we find that the inner disk is truncated with an inner radius of 15+/-3 R_G. The disk is likely truncated by either the boundary layer and/or a magnetic field. Associating the truncated inner disk with pressure from a magnetic field gives an upper limit of B<5+/-2x10^8G. Although the radius is truncated far from the stellar surface, material is still reaching the neutron star surface as evidenced by the X-ray burst present in the t NuSTAR observation.

  7. Ambient noise H/V spectral ratio in site effects estimation in Fateh jang area, Pakistan

    Institute of Scientific and Technical Information of China (English)

    S.M.Talha Qadri; Bushra Nawaz; S.H.Sajjad; Riaz Ahmad Sheikh

    2015-01-01

    Local geology or local site effect is a crucial component while conducting seismic risk assessment studies.Investigations made by utilization of ambient noise are an effective tool for local site estimation.The present study is conducted to perform site response analysis at 13 different sites within urban settlements of Fateh jang area (Pakistan).The aim of this study was achieved by utilizing Nakamura method or H/V spectral ratio method.Some important local site parameters,e.g.,the fundamental frequencies f0 of soft sediments,amplitudes A0 of corresponding H/V spectral ratios,and alluvium thicknesses over 13 sites within the study area,were measured and analyzed.The results show that the study area reflects low fundamental frequency f0.The fundamental frequencies of the sediments are highly variable and lie in a range of 0.6-13.0 Hz.Similarly,amplification factors at these sites are in the range of 2.0-4.0.

  8. Characterisation of capacitively coupled HV/HR-CMOS sensor chips for the CLIC vertex detector

    CERN Document Server

    Kremastiotis, Iraklis; Campbell, Michael; Dannheim, Dominik; Fiergolski, Adrian; Hynds, Daniel; Kulis, Szymon; Peric, Ivan

    2017-01-01

    The capacitive coupling between an active sensor and a readout ASIC has been considered in the framework of the CLIC vertex detector study. The CLICpix Capacitively Coupled Pixel Detector (C3PD) is a High-Voltage CMOS sensor chip produced in a commercial 180 nm HV-CMOS process for this purpose. The sensor was designed to be connected to the CLICpix2 readout chip. It therefore matches the dimensions of the readout chip, featuring a matrix of 128 × 128 square pixels with 25 μm pitch. The sensor chip has been produced with the standard value for the substrate resistivity (∼ 20 Ωcm) and it has been characterised in standalone testing mode, before receiving and testing capacitively coupled assemblies. The standalone measurement results show a rise time of ∼ 20 ns for a power consumption of 5 μW/pixel. Production of the C3PD HV-CMOS sensor chip with higher substrate resistivity wafers (∼ 20, 80, 200 and 1000 Ωcm) is foreseen. The expected benefits of the higher substrate resistivity will be studied using...

  9. A Monolithic Active Pixel Sensor for ionizing radiation using a 180 nm HV-SOI process

    Science.gov (United States)

    Hemperek, Tomasz; Kishishita, Tetsuichi; Krüger, Hans; Wermes, Norbert

    2015-10-01

    An improved SOI-MAPS (Silicon On Insulator Monolithic Active Pixel Sensor) for ionizing radiation based on thick-film High Voltage SOI technology (HV-SOI) has been developed. Similar to existing Fully Depleted SOI-based (FD-SOI) MAPS, a buried silicon oxide inter-dielectric (BOX) layer is used to separate the CMOS electronics from the handle wafer which is used as a depleted charge collection layer. FD-SOI MAPS suffers from radiation damage such as transistor threshold voltage shifts due to charge traps in the oxide layers and charge states created at the silicon oxide boundaries (back gate effect). The X-FAB 180-nm HV-SOI technology offers an additional isolation by deep non-depleted implant between the BOX layer and the active circuitry which mitigates this problem. Therefore we see in this technology a high potential to implement radiation-tolerant MAPS with fast charge collection property. The design and measurement results from a first prototype are presented including charge collection in neutron irradiated samples.

  10. Testbeam results of irradiated ams H18 HV-CMOS pixel sensor prototypes

    CERN Document Server

    INSPIRE-00211411; Braccini, S.; Casse, G.; Chen, H.; Chen, K.; Di Bello, F.A.; Ferrere, D.; Golling, T.; Gonzalez-Sevilla, S.; Iacobucci, G.; Kiehn, M.; Lanni, F.; Liu, H.; Meng, L.; Merlassino, C.; Miucci, A.; Muenstermann, D.; Nessi, M.; Okawa, H.; Peric, I.; Rimoldi, M.; Ristic, B.; Vicente Barrero Pinto, M.; Vossebeld, J.; Weber, M.; Weston, T.; Wu, W.; Xu, L.; Zaffaroni, E.

    2016-01-01

    HV-CMOS pixel sensors are a promising option for the tracker upgrade of the ATLAS experiment at the LHC, as well as for other future tracking applications in which large areas are to be instrumented with radiation-tolerant silicon pixel sensors. We present results of testbeam characterisations of the $4^{\\mathrm{th}}$ generation of Capacitively Coupled Pixel Detectors (CCPDv4) produced with the ams H18 HV-CMOS process that have been irradiated with different particles (reactor neutrons and 18 MeV protons) to fluences between $1\\cdot 10^{14}$ and $5\\cdot 10^{15}$ 1-MeV-n$_\\textrm{eq}$/cm$^2$. The sensors were glued to ATLAS FE-I4 pixel readout chips and measured at the CERN SPS H8 beamline using the FE-I4 beam telescope. Results for all fluences are very encouraging with all hit efficiencies being better than 97% for bias voltages of $85\\,$V. The sample irradiated to a fluence of $1\\cdot 10^{15}$ n$_\\textrm{eq}$/cm$^2$ - a relevant value for a large volume of the upgraded tracker - exhibited 99.7% average hit ...

  11. Active pixel sensors in AMS H18/H35 HV-CMOS technology for the ATLAS HL-LHC upgrade

    Science.gov (United States)

    Ristic, Branislav

    2016-09-01

    Deep sub micron HV-CMOS processes offer the opportunity for sensors built by industry standard techniques while being HV tolerant, making them good candidates for drift-based, fast collecting, thus radiation-hard pixel detectors. For the upgrade of the ATLAS Pixel Detector towards the HL-LHC requirements, active pixel sensors in HV-CMOS technology were investigated. These implement signal processing electronics in deep n-wells, which also act as collecting electrodes. The deep n-wells allow for bias voltages up to 150 V leading to a depletion depth of several 10 μm. Prototype sensors in the AMS H18 180 nm and H35 350 nm HV-CMOS processes were thoroughly tested in lab measurements as well as in testbeam experiments. Irradiations with X-rays and protons revealed a tolerance to ionizing doses of 1 Grad while Edge-TCT studies assessed the effects of radiation on the charge collection. The sensors showed high detection efficiencies after neutron irradiation to 1015neq cm-2 in testbeam experiments. A full reticle size demonstrator chip, implemented in the H35 process is being submitted to prove the large scale feasibility of the HV-CMOS concept.

  12. Enhancing propagation characteristics of truncated localized waves in silica

    KAUST Repository

    Salem, Mohamed

    2011-07-01

    The spectral characteristics of truncated Localized Waves propagating in dispersive silica are analyzed. Numerical experiments show that the immunity of the truncated Localized Waves propagating in dispersive silica to decay and distortion is enhanced as the non-linearity of the relation between the transverse spatial spectral components and the wave vector gets stronger, in contrast to free-space propagating waves, which suffer from early decay and distortion. © 2011 IEEE.

  13. Detecção de herpesvírus bovino 5 (BoHV-5 em bovinos do Sudeste Brasileiro Detection of bovine herpesvirus type 5 (BoHV-5 in cattle in Southeast Brazil

    Directory of Open Access Journals (Sweden)

    L.I. Gomes

    2002-04-01

    Full Text Available This paper reports the detection of bovine herpesvirus type 5 (BoHV-5 by a specific nested PCR assay. Samples were collected from the central nervous system (CNS of cattle from Minas Gerais and São Paulo States, Brazil. All animals died presenting neurological symptoms. Nineteen frozen CNS samples analyzed had been previously tested by fluorescence antibody test for rabies virus and showed negative results. Three paraffin-embedded brain tissue samples were examined by histopatology and the observed alterations suggested nonsuppurative meningoencephalitis. BoHV-5 was detected in five (22.7% among 22 tested samples. The occurrence of BoHV-5 infection is reported in the Southeast region of Brazil, indicating that epidemiological studies should be carried out.

  14. Rapid screen for truncating ATM mutations by PTT-ELISA

    Energy Technology Data Exchange (ETDEWEB)

    Du Liutao; Lai, C.-H. [Department of Pathology and Laboratory Medicine, David Geffen School of Medicine at UCLA, CA 90095 (United States); Concannon, Patrick [Department of Biochemistry and Molecular Genetics, University of Virginia, VA 22908 (United States); Gatti, Richard A. [Department of Pathology and Laboratory Medicine, David Geffen School of Medicine at UCLA, CA 90095 (United States); Department of Human Genetics, David Geffen School of Medicine at UCLA, CA 90095 (United States)], E-mail: rgatti@mednet.ucla.edu

    2008-04-02

    Mutations in the ataxia-telangiectasia mutated (ATM) gene are responsible for the autosomal recessive genetic disorder, ataxia-telangiectasia (A-T). Approximately 80% of ATM mutations found in A-T patients results in truncations, which can be detected by Protein Truncation Test (PTT). Conventional PTT uses SDS-PAGE electrophoresis to detect mobility of radiolabeled truncated protein fragments. In this study, we developed a non-radioactive Protein Truncation Test which utilizes an enzyme-linked immunosorbent assay (PTT-ELISA) to detect ATM mutations in eight overlapping fragments. N- and C-terminal epitopes (c-myc and V5, respectively) were introduced into transcription/translation products, which could then be detected by Sandwich ELISA. Using this assay, we screened 9 newly diagnosed A-T patients consecutively. Of the 18 expected mutations, 14 truncating mutations were independently identified by cDNA direct sequencing and/or DNA dHPLC analysis. PTT-ELISA detected all of these 14. Four mutations were novel. The PTT-ELISA provides a rapid method for detecting truncating mutations in large genes and should be considered prior to using more laborious or costly methods, such as direct sequencing.

  15. Study of HV Dielectrics for High Frequency Operation in Linear & Nonlinear Transmission Lines & Simulation & Development of Hybrid Nonlinear Lines for RF Generation

    Science.gov (United States)

    2015-08-27

    The high voltage diodes D5 to D10 are used to protect the HV switch against negative back swing voltage, while D4 diode for reverse current ...AFRL-AFOSR-CL-TR-2015-0001 STUDY OF HV DIELECTRICS FOR HIGH FREQUENCY OPERATION IN LINEAR & NONLINEAR TRANSMISSION LINES & SIMULATION & DEVELOPMENT...AFOSR Final Performance Report Study of HV Dielectrics for High Frequency Operation in Linear and Nonlinear Transmission Lines and Simulation

  16. Multimeric nature of voltage-gated proton channels

    OpenAIRE

    Koch, Hans P.; Kurokawa, Tatsuki; Okochi, Yoshifumi; Sasaki, Mari; Okamura, Yasushi; Larsson, H. Peter

    2008-01-01

    Voltage-gated potassium channels are comprised of four subunits, and each subunit has a pore domain and a voltage-sensing domain (VSD). The four pore domains assemble to form one single central pore, and the four individual VSDs control the gate of the pore. Recently, a family of voltage-gated proton channels, such as HV or voltage sensor only protein (VSOP), was discovered that contain a single VSD but no pore domain. It has been assumed that VSOP channels are monomeric and contain a single ...

  17. Isolation and In vitro characterization of anti-Gardnerellavaginalisbacteriocin producing Lactobacillus fermentum HV6b isolated from human vaginal ecosystem

    Directory of Open Access Journals (Sweden)

    Baljinder Kaur

    2012-09-01

    Full Text Available Bacteriocin producing strains of lactic acid bacteria were isolated from vaginal swabs of healthy andfecund females and evaluated for their antimicrobial activity against pathogens causing important humandiseases such as gastrointestinal infections, nosocomial and skin diseases. Vaginal isolate HV6b is anagent that could be used to combat growing prevalence of sexually transmitted microbial infections andviral diseases. Therapeutic application of this probiotic strain to protect against gastrointestinal infectionsmay be of great importance for future medicinal use. Bacteriocin HV6b shows maximum inhibitionagainst bacterial vaginosis causing G. vaginalis. It was identified as Lactobacillus fermentum on the basisof biochemical testing and 16S rDNA sequencing. Based on the antibiotic sensitivity profiles vaginalLABs, HV6b was suggested as a strain for formulating topical personal care therapeutics aimed atprevention and treatment of many human diseases.

  18. First Description of Infection of Caprine Herpesvirus 1 (CpHV-1 in Goats in Mainland France

    Directory of Open Access Journals (Sweden)

    Florence Suavet

    2016-02-01

    Full Text Available The purpose of this study was to investigate the epidemiological situation of the caprine herpesvirus 1 (CpHV-1 infection in nine districts in mainland France, mostly in the south, near Italy or Spain, where high seroprevalence has been observed. Two more central areas were also included in the study. The serosurvey was carried out in 9564 goats (275 herds using bovine herpesvirus 1 (BoHV-1 glycoprotein B and E ELISAs. To confirm the presence of specific CpHV-1 antibodies, some of the samples were tested in neutralization assay. Results demonstrate, for the first time, CpHV-1 infection in goat herds on the French mainland. The analysis found cases of alphaherpesviruses infection in each district studied, with different levels of seroprevalence observed within each district (ranging from 0.2% to 31.56% at an individual level and from 9% to 46.2% for herd seroprevalence. Moreover, in the Alpes-Maritimes district, the seroprevalence seemed to be higher in older goats (79.45% of animals 6 years old or more than in younger animals (40.99% of one-year-olds. This result suggests frequent virus re-excretion and circulation in herds. Results analysis also shows that the seroprevalence was higher when the herd size increased. In addition, the first French CpHV-1 strain was isolated from nasal swabs taken on an infected goat. The data reported herein demonstrate that CpHV-1 circulates in mainland France, which should henceforth be taken into consideration in cases of unexplained abortion in goats.

  19. The inversion of spectral ratio H/V in a layered system using the diffuse field assumption (DFA)

    Science.gov (United States)

    Piña-Flores, José; Perton, Mathieu; García-Jerez, Antonio; Carmona, Enrique; Luzón, Francisco; Molina-Villegas, Juan C.; Sánchez-Sesma, Francisco J.

    2017-01-01

    In order to evaluate the site effects on seismic ground motion and establish preventive measures to mitigate these effects, the dynamic characterization of sites is mandatory. Among the various geophysical tools aimed to this end, the horizontal to vertical spectral ratio (H/V) is a simple way to assess the dominant frequency of a site from seismic ambient noise. The aim of this communication is contributing to enhance the potential of this measurement with a novel method that allows extracting from the H/V the elastic properties of the subsoil, assumed here as a multilayer medium. For that purpose, we adopt the diffuse field assumption from both the experimental and the modelling perspectives. At the experimental end, the idea is to define general criteria that make the data processing closely supported by theory. On the modelling front, the challenge is to compute efficiently the imaginary part of Green's function. The Cauchy's residue theory in the horizontal wavenumber complex plane is the selected approach. This method allows both identifying the contributions of body and surface waves and computing them separately. This permits exploring the theoretical properties of the H/V under different compositions of the seismic ambient noise. This answers some questions that historically aroused and gives new insights into the H/V method. The efficient forward calculation is the prime ingredient of an inversion scheme based on both gradient and heuristic searches. The availability of efficient forward calculation of H/V allows exploring some relevant relationships between the H/V curves and the parameters. This allows generating useful criteria to speed up inversion. As in many inverse problems, the non-uniqueness issues also emerge here. A joint inversion method that considers also the dispersion curves of surface waves extracted from seismic ambient noise is presented and applied to experimental data. This joint scheme mitigates effectively the non-uniqueness.

  20. The inversion of spectral ratio H/V in a layered system using the Diffuse Field Assumption (DFA)

    Science.gov (United States)

    Piña-Flores, José; Perton, Mathieu; García-Jerez, Antonio; Carmona, Enrique; Luzón, Francisco; Molina-Villegas, Juan C.; Sánchez-Sesma, Francisco J.

    2016-11-01

    In order to evaluate the site effects on seismic ground motion and establish preventive measures to mitigate these effects, the dynamic characterization of sites is mandatory. Among the various geophysical tools aimed to this end, the horizontal to vertical spectral ratio (H/V) is a simple way to assess the dominant frequency of a site from seismic ambient noise. The aim of this communication is contributing to enhance the potential of this measurement with a novel method that allows extracting from the H/V the elastic properties of the subsoil, assumed here as a multilayer medium. For that purpose, we adopt the Diffuse Field Assumption from both the experimental and the modeling perspectives. At the experimental end, the idea is to define general criteria that make the data processing closely supported by theory. On the modeling front, the challenge is to compute efficiently the imaginary part of Green's function. The Cauchy's residue theory in the horizontal wavenumber complex plane is the selected approach. This method allows both identifying the contributions of body and surface waves and computing them separately. This permits exploring the theoretical properties of the H/V under different compositions of the seismic ambient noise. This answers some questions that historically aroused and gives new insights into the H/V method. The efficient forward calculation is the prime ingredient of an inversion scheme based on both gradient and heuristic searches. The availability of efficient forward calculation of H/V allows exploring some relevant relationships between the H/V curves and the parameters. This allows generating useful criteria to speed up inversion. As in many inverse problems, the non-uniqueness issues also emerge here. A joint inversion method that considers also the dispersion curves of surface waves extracted from seismic ambient noise is presented and applied to experimental data. This joint scheme mitigates effectively the non-uniqueness.

  1. The Cystine Knot Is Responsible for the Exceptional Stability of the Insecticidal Spider Toxin ω-Hexatoxin-Hv1a

    Science.gov (United States)

    Herzig, Volker; King, Glenn F.

    2015-01-01

    The inhibitor cystine knot (ICK) is an unusual three-disulfide architecture in which one of the disulfide bonds bisects a loop formed by the two other disulfide bridges and the intervening sections of the protein backbone. Peptides containing an ICK motif are frequently considered to have high levels of thermal, chemical and enzymatic stability due to cross-bracing provided by the disulfide bonds. Experimental studies supporting this contention are rare, in particular for spider-venom toxins, which represent the largest diversity of ICK peptides. We used ω-hexatoxin-Hv1a (Hv1a), an insecticidal toxin from the deadly Australian funnel-web spider, as a model system to examine the contribution of the cystine knot to the stability of ICK peptides. We show that Hv1a is highly stable when subjected to temperatures up to 75 °C, pH values as low as 1, and various organic solvents. Moreover, Hv1a was highly resistant to digestion by proteinase K and when incubated in insect hemolymph and human plasma. We demonstrate that the ICK motif is essential for the remarkable stability of Hv1a, with the peptide’s stability being dramatically reduced when the disulfide bonds are eliminated. Thus, this study demonstrates that the ICK motif significantly enhances the chemical and thermal stability of spider-venom peptides and provides them with a high level of protease resistance. This study also provides guidance to the conditions under which Hv1a could be stored and deployed as a bioinsecticide. PMID:26516914

  2. The Cystine Knot Is Responsible for the Exceptional Stability of the Insecticidal Spider Toxin ω-Hexatoxin-Hv1a.

    Science.gov (United States)

    Herzig, Volker; King, Glenn F

    2015-10-26

    The inhibitor cystine knot (ICK) is an unusual three-disulfide architecture in which one of the disulfide bonds bisects a loop formed by the two other disulfide bridges and the intervening sections of the protein backbone. Peptides containing an ICK motif are frequently considered to have high levels of thermal, chemical and enzymatic stability due to cross-bracing provided by the disulfide bonds. Experimental studies supporting this contention are rare, in particular for spider-venom toxins, which represent the largest diversity of ICK peptides. We used ω-hexatoxin-Hv1a (Hv1a), an insecticidal toxin from the deadly Australian funnel-web spider, as a model system to examine the contribution of the cystine knot to the stability of ICK peptides. We show that Hv1a is highly stable when subjected to temperatures up to 75 °C, pH values as low as 1, and various organic solvents. Moreover, Hv1a was highly resistant to digestion by proteinase K and when incubated in insect hemolymph and human plasma. We demonstrate that the ICK motif is essential for the remarkable stability of Hv1a, with the peptide's stability being dramatically reduced when the disulfide bonds are eliminated. Thus, this study demonstrates that the ICK motif significantly enhances the chemical and thermal stability of spider-venom peptides and provides them with a high level of protease resistance. This study also provides guidance to the conditions under which Hv1a could be stored and deployed as a bioinsecticide.

  3. The Cystine Knot Is Responsible for the Exceptional Stability of the Insecticidal Spider Toxin ω-Hexatoxin-Hv1a

    Directory of Open Access Journals (Sweden)

    Volker Herzig

    2015-10-01

    Full Text Available The inhibitor cystine knot (ICK is an unusual three-disulfide architecture in which one of the disulfide bonds bisects a loop formed by the two other disulfide bridges and the intervening sections of the protein backbone. Peptides containing an ICK motif are frequently considered to have high levels of thermal, chemical and enzymatic stability due to cross-bracing provided by the disulfide bonds. Experimental studies supporting this contention are rare, in particular for spider-venom toxins, which represent the largest diversity of ICK peptides. We used ω-hexatoxin-Hv1a (Hv1a, an insecticidal toxin from the deadly Australian funnel-web spider, as a model system to examine the contribution of the cystine knot to the stability of ICK peptides. We show that Hv1a is highly stable when subjected to temperatures up to 75 °C, pH values as low as 1, and various organic solvents. Moreover, Hv1a was highly resistant to digestion by proteinase K and when incubated in insect hemolymph and human plasma. We demonstrate that the ICK motif is essential for the remarkable stability of Hv1a, with the peptide’s stability being dramatically reduced when the disulfide bonds are eliminated. Thus, this study demonstrates that the ICK motif significantly enhances the chemical and thermal stability of spider-venom peptides and provides them with a high level of protease resistance. This study also provides guidance to the conditions under which Hv1a could be stored and deployed as a bioinsecticide.

  4. The effect of truncation on very small cardiac SPECT camerasystems

    Energy Technology Data Exchange (ETDEWEB)

    Rohmer, Damien; Eisner, Robert L.; Gullberg, Grant T.

    2006-08-01

    Background: The limited transaxial field-of-view (FOV) of avery small cardiac SPECT camera system causes view-dependent truncationof the projection of structures exterior to, but near the heart. Basictomographic principles suggest that the reconstruction of non-attenuatedtruncated data gives a distortion-free image in the interior of thetruncated region, but the DC term of the Fourier spectrum of thereconstructed image is incorrect, meaning that the intensity scale of thereconstruction is inaccurate. The purpose of this study was tocharacterize the reconstructed image artifacts from truncated data, andto quantify their effects on the measurement of tracer uptake in themyocardial. Particular attention was given to instances where the heartwall is close to hot structures (structures of high activity uptake).Methods: The MCAT phantom was used to simulate a 2D slice of the heartregion. Truncated and non-truncated projections were formed both with andwithout attenuation. The reconstructions were analyzed for artifacts inthe myocardium caused by truncation, and for the effect that attenuationhas relative to increasing those artifacts. Results: The inaccuracy dueto truncation is primarily caused by an incorrect DC component. Forvisualizing theleft ventricular wall, this error is not worse than theeffect of attenuation. The addition of a small hot bowel-like structurenear the left ventricle causes few changes in counts on the wall. Largerartifacts due to the truncation are located at the boundary of thetruncation and can be eliminated by sinogram interpolation. Finally,algebraic reconstruction methods are shown to give better reconstructionresults than an analytical filtered back-projection reconstructionalgorithm. Conclusion: Small inaccuracies in reconstructed images fromsmall FOV camera systems should have little effect on clinicalinterpretation. However, changes in the degree of inaccuracy in countsfrom slice toslice are due to changes in the truncated structures

  5. Radiometric resolution enhancement by lossy compression as compared to truncation followed by lossless compression

    Science.gov (United States)

    Tilton, James C.; Manohar, Mareboyana

    1994-01-01

    Recent advances in imaging technology make it possible to obtain imagery data of the Earth at high spatial, spectral and radiometric resolutions from Earth orbiting satellites. The rate at which the data is collected from these satellites can far exceed the channel capacity of the data downlink. Reducing the data rate to within the channel capacity can often require painful trade-offs in which certain scientific returns are sacrificed for the sake of others. In this paper we model the radiometric version of this form of lossy compression by dropping a specified number of least significant bits from each data pixel and compressing the remaining bits using an appropriate lossless compression technique. We call this approach 'truncation followed by lossless compression' or TLLC. We compare the TLLC approach with applying a lossy compression technique to the data for reducing the data rate to the channel capacity, and demonstrate that each of three different lossy compression techniques (JPEG/DCT, VQ and Model-Based VQ) give a better effective radiometric resolution than TLLC for a given channel rate.

  6. Radiation hardness studies of AMS HV-CMOS 350 nm prototype chip HVStripV1

    Science.gov (United States)

    Kanisauskas, K.; Affolder, A.; Arndt, K.; Bates, R.; Benoit, M.; Di Bello, F.; Blue, A.; Bortoletto, D.; Buckland, M.; Buttar, C.; Caragiulo, P.; Das, D.; Dopke, J.; Dragone, A.; Ehrler, F.; Fadeyev, V.; Galloway, Z.; Grabas, H.; Gregor, I. M.; Grenier, P.; Grillo, A.; Hiti, B.; Hoeferkamp, M.; Hommels, L. B. A.; Huffman, B. T.; John, J.; Kenney, C.; Kramberger, J.; Liang, Z.; Mandic, I.; Maneuski, D.; Martinez-Mckinney, F.; MacMahon, S.; Meng, L.; Mikuž, M.; Muenstermann, D.; Nickerson, R.; Peric, I.; Phillips, P.; Plackett, R.; Rubbo, F.; Segal, J.; Seidel, S.; Seiden, A.; Shipsey, I.; Song, W.; Staniztki, M.; Su, D.; Tamma, C.; Turchetta, R.; Vigani, L.; Volk, J.; Wang, R.; Warren, M.; Wilson, F.; Worm, S.; Xiu, Q.; Zhang, J.; Zhu, H.

    2017-02-01

    CMOS active pixel sensors are being investigated for their potential use in the ATLAS inner tracker upgrade at the HL-LHC. The new inner tracker will have to handle a significant increase in luminosity while maintaining a sufficient signal-to-noise ratio and pulse shaping times. This paper focuses on the prototype chip "HVStripV1" (manufactured in the AMS HV-CMOS 350nm process) characterization before and after irradiation up to fluence levels expected for the strip region in the HL-LHC environment. The results indicate an increase of depletion region after irradiation for the same bias voltage by a factor of ≈2.4 and ≈2.8 for two active pixels on the test chip. There was also a notable increase in noise levels from 85 e‑ to 386 e‑ and from 75 e‑ to 277 e‑ for the corresponding pixels.

  7. Recent results with HV-CMOS and planar sensors for the CLIC vertex detector

    CERN Document Server

    AUTHOR|(SzGeCERN)734627

    2016-01-01

    The physics aims for the future multi-TeV e+e- Compact Linear Collider (CLIC) impose high precision requirements on the vertex detector which has to match the experimental conditions, such as the time structure of the collisions and the presence of beam-induced backgrounds. The principal challenges are: a point resolution of 3μm, 10 ns time stamping capabilities, low mass (⇠0.2% X0 per layer), low power dissipation and pulsed power operation. Recent results of test beam measurements and GEANT4 simulations for assemblies with Timepix3 ASICs and thin active-edge sensors are presented. The 65 nm CLICpix readout ASIC with 25μm pitch was bump bonded to planar silicon sensors and also capacitively coupled through a thin layer of glue to active HV-CMOS sensors. Test beam results for these two hybridisation concepts are presented.

  8. HV/CVD Grown Relaxed SiGe Buffer Layers for SiGe HMOSFETs

    Institute of Scientific and Technical Information of China (English)

    黄文韬; 罗广礼; 史进; 邓宁; 陈培毅; 钱佩信

    2003-01-01

    High-vacuum/chemical-vapor deposition (HV/CVD) system was used to grow relaxed SiGe buffer layers on Si substrates. Several methods were then used to analyze the quality of the SiGe films. X-ray diffraction and Raman spectroscopy showed that the upper layer was almost fully relaxed. Second ion mass spectroscopy showed that the Ge compositions were step-graded. Transmission electron microscopy showed that the misfit dislocations were restrained to the graded SiGe layers. Tests of the electrical properties of tensile-strained Si on relaxed SiGe buffer layers showed that their transconductances were higher than that of Si devices. These results verify the high quality of the relaxed SiGe buffer layer. The calculated critical layer thicknesses of the graded Si1-xGex layer on Si substrate and a Si layer on the relaxed SiGe buffer layer agree well with experimental results.

  9. Pulmonary MRA: Differentiation of pulmonary embolism from truncation artefact

    Energy Technology Data Exchange (ETDEWEB)

    Bannas, Peter [University of Wisconsin-Madison, Department of Radiology, Madison, WI (United States); University Hospital Hamburg-Eppendorf, Department of Radiology, Hamburg (Germany); Schiebler, Mark L.; Motosugi, Utaroh; Francois, Christopher J. [University of Wisconsin-Madison, Department of Radiology, Madison, WI (United States); Reeder, Scott B. [University of Wisconsin-Madison, Department of Radiology, Madison, WI (United States); University of Wisconsin-Madison, Department of Biomedical Engineering, Madison, WI (United States); University of Wisconsin-Madison, Department of Medical Physics, Madison, WI (United States); University of Wisconsin-Madison, Department of Medicine, Madison, WI (United States); Nagle, Scott K. [University of Wisconsin-Madison, Department of Radiology, Madison, WI (United States); University of Wisconsin-Madison, Department of Medical Physics, Madison, WI (United States); University of Wisconsin-Madison, Department of Pediatrics, Madison, WI (United States)

    2014-08-15

    Truncation artefact (Gibbs ringing) causes central signal drop within vessels in pulmonary magnetic resonance angiography (MRA) that can be mistaken for emboli, reducing diagnostic accuracy for pulmonary embolism (PE). We propose a quantitative approach to differentiate truncation artefact from PE. Twenty-eight patients who underwent pulmonary computed tomography angiography (CTA) for suspected PE were recruited for pulmonary MRA. Signal intensity drops within pulmonary arteries that persisted on both arterial-phase and delayed-phase MRA were identified. The percent signal loss between the vessel lumen and central drop was measured. CTA served as the reference standard for presence of pulmonary emboli. A total of 65 signal intensity drops were identified on MRA. Of these, 48 (74 %) were artefacts and 17 (26 %) were PE, as confirmed by CTA. Truncation artefacts had a significantly lower median signal drop than PE on both arterial-phase (26 % [range 12-58 %] vs. 85 % [range 53-91 %]) and delayed-phase MRA (26 % [range 11-55 %] vs. 77 % [range 47-89 %]), p < 0.0001 for both. Receiver operating characteristic (ROC) analyses revealed a threshold value of 51 % (arterial phase) and 47 % signal drop (delayed phase) to differentiate between truncation artefact and PE with 100 % sensitivity and greater than 90 % specificity. Quantitative signal drop is an objective tool to help differentiate truncation artefact and pulmonary embolism in pulmonary MRA. (orig.)

  10. Comparative Investigation of Pollution Accumulation and Natural Cleaning for Different HV Insulators

    Directory of Open Access Journals (Sweden)

    M. Dimitropoulou

    2015-04-01

    Full Text Available High Voltage insulators are scattered throughout any HV network and a single insulator fault may cause an excessive outage. Reliability is a key issue for electric power systems and fault-free performance of insulators greatly reflects on the reliability of the system. Environmental influence is rather important for the optimum selection of outdoor insulators and, therefore, field measurements provide valuable information. Utilities perform such measurements in order to decide upon the location/route of new HV installations (substations, lines etc and also to optimize the selection, maintenance and replacement of already installed insulators. A rather interesting case in Greek territory is the island of Crete, due to the coastal development of the network and the local weather conditions. The Greek utility has employed a variety of remedies to cope with the pollution problem. Following the positive feedback after the installation on certain tower in the past, a large project to replace all ceramic insulators with new polymer ones of hydrophobic surface is now in progress. Polymer coatings have also been extensively applied on substations and also on certain areas/towers of the transmission network in the past. In order to investigate the pollution accumulation and the impact of natural washing on different insulator types, a series of periodical ESDD and NSDD pollution measurements were conducted in HEDNO’s TALOS High Voltage Test Station for a 3-months period. Multiple measurements were performed on each insulator every month in order to collect additional data. Five different insulators were selected based on the types historically used in the Cretan Network. Along with the standard glass disc profile, two strings of glass fog profile (the one coated with RTV and two long-rod composite insulators of different shed profile and material were used. Results are presented and discussed in this paper.

  11. Truncated predictor feedback for time-delay systems

    CERN Document Server

    Zhou, Bin

    2014-01-01

    This book provides a systematic approach to the design of predictor based controllers for (time-varying) linear systems with either (time-varying) input or state delays. Differently from those traditional predictor based controllers, which are infinite-dimensional static feedback laws and may cause difficulties in their practical implementation, this book develops a truncated predictor feedback (TPF) which involves only finite dimensional static state feedback. Features and topics: A novel approach referred to as truncated predictor feedback for the stabilization of (time-varying) time-delay systems in both the continuous-time setting and the discrete-time setting is built systematically Semi-global and global stabilization problems of linear time-delay systems subject to either magnitude saturation or energy constraints are solved in a systematic manner Both stabilization of a single system and consensus of a group of systems (multi-agent systems) are treated in a unified manner by applying the truncated pre...

  12. On truncated generalized Gibbs ensembles in the Ising field theory

    Science.gov (United States)

    Essler, F. H. L.; Mussardo, G.; Panfil, M.

    2017-01-01

    We discuss the implementation of two different truncated Generalized Gibbs Ensembles (GGE) describing the stationary state after a mass quench process in the Ising Field Theory. One truncated GGE is based on the semi-local charges of the model, the other on regularized versions of its ultra-local charges. We test the efficiency of the two different ensembles by comparing their predictions for the stationary state values of the single-particle Green’s function G(x)= of the complex fermion field \\psi (x) . We find that both truncated GGEs are able to recover G(x), but for a given number of charges the semi-local version performs better.

  13. Inverse probability weighted Cox regression for doubly truncated data.

    Science.gov (United States)

    Mandel, Micha; de Uña-Álvarez, Jacobo; Simon, David K; Betensky, Rebecca A

    2017-09-08

    Doubly truncated data arise when event times are observed only if they fall within subject-specific, possibly random, intervals. While non-parametric methods for survivor function estimation using doubly truncated data have been intensively studied, only a few methods for fitting regression models have been suggested, and only for a limited number of covariates. In this article, we present a method to fit the Cox regression model to doubly truncated data with multiple discrete and continuous covariates, and describe how to implement it using existing software. The approach is used to study the association between candidate single nucleotide polymorphisms and age of onset of Parkinson's disease. © 2017, The International Biometric Society.

  14. The Stars and Gas in Outer Parts of Galaxy Disks : Extended or Truncated, Flat or Warped?

    NARCIS (Netherlands)

    van der Kruit, P. C.; Funes, JG; Corsini, EM

    2008-01-01

    I review observations of truncations of stellar disks and models for their origin, compare observations of truncations in moderately inclined galaxies to those in edge-on systems and discuss the relation between truncations and H I-warps and their systematics and origin. Truncations are a common fea

  15. The role of the HvNAC6 transcription factor in response to biotic and abiotic stress in barley

    DEFF Research Database (Denmark)

    Chen, Yan-Jun

    -mediated transformation methods could be used to study stress responses at the whole-plant level. The abscisic acid (ABA) and salicylic acid (SA) levels were measured during Bgh infection to investigate the involvement of these hormones and TF in the basal resistance. HvNAC6 RNAi plants were also subjected to dehydration...

  16. Active Pixel Sensors in ams H18/H35 HV-CMOS Technology for the ATLAS HL-LHC Upgrade

    CERN Document Server

    Ristic, Branislav

    2016-01-01

    Deep sub micron HV-CMOS processes offer the opportunity for sensors built by industry standard techniques while being HV tolerant, making them good candidates for drift-based, fast collecting, thus radiation-hard pixel detectors. For the upgrade of the ATLAS Pixel Detector towards the HL-LHC requirements, active pixel sensors in HV-CMOS technology were investigated. These implement amplifier and discriminator stages directly in insulating deep n-wells, which also act as collecting electrodes. The deep n-wells allow for bias voltages up to 150V leading to a depletion depth of several 10um. Prototype sensors in the ams H18 180nm and H35 350nm HV-CMOS processes have been manufactured, acting as a potential drop-in replacement for the current ATLAS Pixel sensors, thus leaving higher level processing such as trigger handling to dedicated read-out chips. Sensors were thoroughly tested in lab measurements as well as in testbeam experiments. Irradiation with X-rays and protons revealed a tolerance to ionizing doses o...

  17. Mapping a part of Neuquen Basin in Argentina by global-phase H/V spectral ratio

    NARCIS (Netherlands)

    Nishitsuji, Y.; Ruigrok, E.; Gomez, M.; Draganov, D.S.

    2015-01-01

    We investigated the applicability of global phases (epicentral distances of ≥ 120° and ≥ 150°) for the H/V spectral ratio to identify the fundamental resonance frequency. We applied the method to delineate a part of Neuquén basin in Argentina without the need for active seismic sources. We obtained

  18. Constraints on the variable subglacial structure of Whillans Ice Stream from ambient noise Rayleigh wave H/V ratios

    Science.gov (United States)

    Pratt, M. J.; Shen, W.; Wiens, D.; Winberry, J. P.; Anandakrishnan, S.

    2016-12-01

    Horizontal-to-vertical (H/V) ellipticity ratios of Rayleigh waves have been used to determine shallow (reflection imaging showing a deeper sedimentary package that extends to an unknown depth. It is also known that the frictional properties of the WIS ice-bed interface at 700 m depth are highly heterogeneous, including stick-spots of high friction, possibly as a result of compacted sediment or bedrock, and active subglacial lakes where frictional coefficients are effectively zero. Ambient noise cross-correlations are calculated between all station pairs, restricting the minimum interstation distance to 20 km, as well as constraining valid H/V ratios of radial and vertical sources between the same station pair to wave energy with good signal-to-noise between 6 s and 20 s that are sensitive to the shear velocity of the shallowest sedimentary layers beneath the ice stream and is combined with average phase and group velocity of the area to help constrain the inversion. H/V ratio modeling results suggest that ratios are highly susceptible to sedimentary layer thickness. Ratios also increase over the observed frequency band with the presence of a shallow, saturated sedimentary layer with high Vp/Vs. In preliminary results, we observe an increase in H/V ratio towards the grounding line as well as at stations where hydro-potential surface is high. These higher ratios can be attributed to higher water content within sediments, or an increase in the sedimentary layer thickness.

  19. Optimal Truncation in Ionization of hydrogen by Electron Impact

    Institute of Scientific and Technical Information of China (English)

    张程华; 牛英煜; 吴炜; 邱卫; 辛君丽; 王晓伟; 王京阳

    2003-01-01

    An analytic expression for the ionization amplitude of hydrogen by electron impact is found to contain a polynomial by an optimal truncation in an asymptotic series and a convergent series. The ionization amplitude, i.e., the transition matrix element on the energy shell, is decomposed into two parts: the structure-scattering factor and correlation factor, based on an approximation of the projectile plane wave in coplanar asymmetric geometries.The contribution of these factors to the triple differential cross section is evaluated using the method of optional truncation of asymptotic and convergent series.

  20. Fringe integral equation method for a truncated grounded dielectric slab

    DEFF Research Database (Denmark)

    Jørgensen, Erik; Maci, S.; Toccafondi, A.

    2001-01-01

    The problem of scattering by a semi-infinite grounded dielectric slab illuminated by an arbitrary incident TMz polarized electric field is studied by solving a new set of “fringe” integral equations (F-IEs), whose functional unknowns are physically associated to the wave diffraction processes...... occurring at the truncation. The F-IEs are obtained by subtracting from the surface/surface integral equations pertinent to the truncated slab, an auxiliary set of equations obtained for the canonical problem of an infinite grounded slab illuminated by the same source. The F-IEs are solved by the method...

  1. A Curious Truncation of N=4 Yang-Mills

    CERN Document Server

    Basu, A; Sethi, S; Basu, Anirban; Sethi, Savdeep

    2004-01-01

    The coupling constant dependence of correlation functions of BPS operators in N=4 Yang-Mills can be expressed in terms of integrated correlation functions. We approximate these integrated correlators by using a truncated OPE expansion. This leads to differential equations for the coupling dependence. When applied to a particular sixteen point correlator, the coupling dependence we find agrees with the corresponding amplitude computed via the AdS/CFT correspondence. We conjecture that this truncation becomes exact in the large N and large 't Hooft coupling limit.

  2. Bayesian analysis of truncation errors in chiral effective field theory

    Science.gov (United States)

    Melendez, J.; Furnstahl, R. J.; Klco, N.; Phillips, D. R.; Wesolowski, S.

    2016-09-01

    In the Bayesian approach to effective field theory (EFT) expansions, truncation errors are derived from degree-of-belief (DOB) intervals for EFT predictions. By encoding expectations about the naturalness of EFT expansion coefficients for observables, this framework provides a statistical interpretation of the standard EFT procedure where truncation errors are estimated using the order-by-order convergence of the expansion. We extend and test previous calculations of DOB intervals for chiral EFT observables, examine correlations between contributions at different orders and energies, and explore methods to validate the statistical consistency of the EFT expansion parameter. Supported in part by the NSF and the DOE.

  3. Truncated Long-Range Percolation on Oriented Graphs

    Science.gov (United States)

    van Enter, A. C. D.; de Lima, B. N. B.; Valesin, D.

    2016-07-01

    We consider different problems within the general theme of long-range percolation on oriented graphs. Our aim is to settle the so-called truncation question, described as follows. We are given probabilities that certain long-range oriented bonds are open; assuming that the sum of these probabilities is infinite, we ask if the probability of percolation is positive when we truncate the graph, disallowing bonds of range above a possibly large but finite threshold. We give some conditions in which the answer is affirmative. We also translate some of our results on oriented percolation to the context of a long-range contact process.

  4. Transgenic plants expressing ω-ACTX-Hv1a and snowdrop lectin (GNA) fusion protein show enhanced resistance to aphids.

    Science.gov (United States)

    Nakasu, Erich Y T; Edwards, Martin G; Fitches, Elaine; Gatehouse, John A; Gatehouse, Angharad M R

    2014-01-01

    Recombinant fusion proteins containing arthropod toxins have been developed as a new class of biopesticides. The recombinant fusion protein Hv1a/GNA, containing the spider venom toxin ω-ACTX-Hv1a linked to snowdrop lectin (GNA) was shown to reduce survival of the peach-potato aphid Myzus persicae when delivered in artificial diet, with survival <10% after 8 days exposure to fusion protein at 1 mg/ml. Although the fusion protein was rapidly degraded by proteases in the insect, Hv1a/GNA oral toxicity to M. persicae was significantly greater than GNA alone. A construct encoding the fusion protein, including the GNA leader sequence, under control of the constitutive CaMV 35S promoter was transformed into Arabidopsis; the resulting plants contained intact fusion protein in leaf tissues at an estimated level of 25.6 ± 4.1 ng/mg FW. Transgenic Arabidopsis expressing Hv1a/GNA induced up to 40% mortality of M. persicae after 7 days exposure in detached leaf bioassays, demonstrating that transgenic plants can deliver fusion proteins to aphids. Grain aphids (Sitobion avenae) were more susceptible than M. persicae to the Hv1a/GNA fusion protein in artificial diet bioassays (LC50 = 0.73 mg/ml after 2 days against LC50 = 1.81 mg/ml for M. persicae), as they were not able to hydrolyze the fusion protein as readily as M. persicae. Expression of this fusion protein in suitable host plants for the grain aphid is likely to confer higher levels of resistance than that shown with the M. persicae/Arabidopsis model system.

  5. Growth of cyprinid herpesvirus 2 (CyHV-2) in cell culture and experimental infection of goldfish Carassius auratus.

    Science.gov (United States)

    Ito, Takafumi; Kurita, Jun; Ozaki, Akiyuki; Sano, Motohiko; Fukuda, Hideo; Ototake, Mitsuru

    2013-09-03

    Herpesviral haematopoietic necrosis has caused great economic damage to goldfish Carassius auratus aquaculture in Japan. The existence of cyprinid herpesvirus 2 (CyHV-2), the causative agent, has also been reported from several other countries. To prevent spread to other areas, basic virological information such as viral kinetics in infected fish is essential. Experimental infection trials using reliably prepared CyHV-2 for defining viral kinetics are difficult to carry out because successful and sustainable propagation of this virus in cell culture has previously been limited. Here we describe a method for sustainable propagation of CyHV-2 in cell culture, and the results of fish infection experiments using the propagated virus. We found that goldfish fin (GFF) cells and standard Ryukin Takafumi (SRTF) cells established from goldfish fin can be used for continuous propagation of CyHV-2. Experimental infections using 2 varieties of goldfish, Ryukin and Edonishiki, were performed with the virus passaged 7 times in GFF cells. In transmission experiments with water temperature at 20°C, cumulative mortality was 30% in Ryukin infected by immersion, and 90 and 100% in Edonishiki and Ryukin intraperitoneally injected with the virus, respectively. In an experiment carried out at 25°C, 90% of Edonishiki challenged by immersion died. PCR detection of viral DNA from the organs of infected fish showed that systemic infection occurs and also that the kidney is a main viral multiplication site. Moreover, CyHV-2 was successfully re-isolated in GFF cells from the dead fish.

  6. Fine mapping of a HvCBF gene cluster at the frost resistance locus Fr-H2 in barley.

    Science.gov (United States)

    Francia, E; Barabaschi, D; Tondelli, A; Laidò, G; Rizza, F; Stanca, A M; Busconi, M; Fogher, C; Stockinger, E J; Pecchioni, N

    2007-11-01

    Barley is an economically important model for the Triticeae tribe. We recently developed a new resource: the 'Nure' x 'Tremois' mapping population. Two low temperature QTLs were found to segregate on the long arm of chromosome 5H (Fr-H1, distal; Fr-H2, proximal). With the final aim of positional cloning of the genetic determinants of Fr-H1 and Fr-H2, a large segregating population of 1,849 F(2) plants between parents 'Nure' and 'Tremois' was prepared. These two QT loci were first validated by using a set of F(3) families, marker-selected to harbor pairs of reciprocal haplotypes, with one QTL fixed at homozygosity and the alternate one in heterozygous phase. The study was then focused towards the isolation of the determinant of Fr-H2. Subsequent recombinant screens and phenotypic evaluation of F(4) segregants allowed us to estimate (P < or = 0.01) a refined genomic interval of Fr-H2 (4.6 cM). Several barley genes with the CBF transcription factor signature had been already roughly mapped in cluster at Fr-H2, and they represent likely candidate genes underlying this QTL. Using the large segregating population (3,698 gametes) a high-resolution genetic map of the HvCBF gene cluster was then constructed, and after fine mapping, six recombinations between the HvCBFs were observed. It was therefore possible to genetically divide seven HvCBF subclusters in barley, in a region spanning 0.81 cM, with distances among them varying from 0.03 to 0.32 cM. The few recombinants between the different HvCBF subclusters are being marker-selected and taken to homozygosity, to phenotypically separate the effects of the single HvCBF genes.

  7. Frequency of antibodies against bovine herpesvirus type 1 (BoHV-1 in beef cattle not vaccinated

    Directory of Open Access Journals (Sweden)

    Ermilton Junio Pereira de Freitas

    2014-06-01

    Full Text Available Bovine herpesvirus type 1 (BoHV-1, is responsible for clinical manifestations such as infectious bovine rhinotracheitis, abortion, conjunctivitis, infectious pustular vulvovaginitis and balanoposthitis. This virus has been responsible for major losses in different productive and reproductive herds in the country. Thus, the objective of this study was to estimate the frequency of antibodies against BoHV-1 in beef heifers not vaccinated in Microregion of Imperatriz, Maranhao, and identify the age group most affected by the virus, as well as a study of factors associated with virus infection and to evaluate the indirect ELISA using the serum neutralization (SN as a reference standard. The study was conducted in 48 herds, cutting, distributed in 12 counties of Microregion of Imperatriz. The samples were collected from female cattle stratified into three age groups, ? 12 months, between 12 and 36 months and ? 36 months of age. The samples were subjected to two serological tests, ELISA and SN. In each herd, an epidemiological questionnaire was applied in order to obtain information on management and reproductive sanitary, for the study of risk factors. The frequency of antibodies against BoHV-1 in Microregion of Imperatriz was 63.23%, and the municipalities of Açailândia Buritirana showed the highest frequencies, both with 80.44%, the most affected age group, the Microregion, was animals aged ? 36 months (69.65%. Based on the results we can conclude that the frequency of antibodies against BoHV-1 is high, between the age groups most affected were the animals aged ? 36 months were considered risk factors for virus transmission, return to estrus (OR=1.874, recovery of animals from other states / region (OR=1.365 and the creation of goat / sheep associated with bovine (OR=1.348, the indirect ELISA technique showed moderate concordance when compared to SN technique, which is the gold standard technique for diagnosis of BoHV-1.

  8. Transgenic plants expressing -ACTX-Hv1a and snowdrop lectin (GNA fusion protein show enhanced resistance to aphids

    Directory of Open Access Journals (Sweden)

    Erich Y.T. Nakasu

    2014-11-01

    Full Text Available Recombinant fusion proteins containing arthropod toxins have been developed as a new class of biopesticides. The recombinant fusion protein Hv1a/GNA, containing the spider venom toxin w-ACTX-Hv1a linked to snowdrop lectin (GNA was shown to reduce survival of the peach-potato aphid Myzus persicae when delivered in artificial diet, with survival <10% after 8 days exposure to fusion protein at 1 mg/ml. Although the fusion protein was rapidly degraded by proteases in the insect, Hv1a/GNA oral toxicity to M. persicae was significantly greater than GNA alone. A construct encoding the fusion protein, including the GNA leader sequence, under control of the constitutive CaMV 35S promoter was transformed into Arabidopsis; the resulting plants contained intact fusion protein in leaf tissues at an estimated level of 25.6±4.1 ng/mg FW. Transgenic Arabidopsis expressing Hv1a/GNA induced up to 40% mortality of M. persicae after seven days exposure in detached leaf bioassays, demonstrating that transgenic plants can deliver fusion proteins to aphids. Grain aphids (Sitobion avenae were more susceptible than M. persicae to the Hv1a/GNA fusion protein in artificial diet bioassays (LC50=0.73 mg/ml after two days against LC50=1.81 mg/ml for M. persicae, as they were not able to hydrolyze the fusion protein as readily as M. persicae. Expression of this fusion protein in suitable host plants for the grain aphid is likely to confer higher levels of resistance than that shown with the M. persicae/Arabidopsis model system.

  9. Imaging the crustal structure of the valley of Mexico and higher mode identification using H/V spectral ratio

    Science.gov (United States)

    Rivet, D.; Campillo, M.; Sanchez-Sesma, F.; Singh, S. K.

    2012-04-01

    We reconstruct Rayleigh and Love waves from cross-correlations of ambient seismic noise recorded at 19 broad-band stations of the MesoAmerica Seismic Experiment (MASE) and Valley of Mexico Experiment (VMEX). The cross-correlations are computed over 2 years of noise records for the 8 MASE stations and over 1 year for the 11 VMEX stations. We use surface waves with sufficient signal-to-noise ratio to measure group velocity dispersion curves at period of 0.5 to 3 seconds. For paths within the soft quaternary sediments basin, the maximum energy is observed at velocity higher than expected for the fundamental mode. This observation suggests the importance of higher modes as the main vectors of energy in such complex structures. To perform a reliable inversion of the velocity structure beneath the valley, an identification of these dominants modes is required. To identify the modes of surface waves we use the spectral ratio of the horizontal components over the vertical component (H/V) measured on seismic coda. We compare the observed values with the theoretical H/V for the velocity model deduced from surface wave dispersion when assuming a particular mode. H/V ratio in the coda is computed under the hypothesis of equipartition of a diffuse field in a layered medium following Margerin et al. [2009] and Sánchez-Sesma et al. [2011]. We processed several events to ensure that the observed H/V is stable. The comparison of the modelled dispersion and H/V ratio allows for mode identification, and consequently to recover the velocity model of the structure. We conclude on the predominance of higher modes in our observations. The excitation of higher modes is key element of explanation for the long duration and amplification of the seismic signals observed in the Valley of Mexico.

  10. Characterization of BoHV-5 field strains circulation and report of transient specific subtype of bovine herpesvirus 5 in Argentina

    Directory of Open Access Journals (Sweden)

    Thiry Julien

    2011-02-01

    Full Text Available Abstract Background Bovine herpesvirus 5 (BoHV-5 is a member of the subfamily Alphaherpesvirinae responsible for meningo-encephalitis in young cattle. The first case of bovine meningo-encephalitis associated with a herpesvirus infection was reported in Australia. The current geographical distribution of BoHV-5 infection is mainly restricted to South America, especially Brazil and Argentina. Outbreaks of BoHV-5 are regularly observed in Argentina suggesting the circulation of the virus in the bovine population. Results Seventeen field strains of BoHV-5 isolated from 1984 to now were confirmed by differential PCR and subjected to restriction endonuclease analysis (REA. Viral DNA was cleaved with BstEII which allows the differentiation among subtypes a, b and non a, non b. According to the REA with BstEII, only one field strain showed a pattern similar to the Argentinean A663 strain (prototype of BoHV-5b. All other isolates showed a clear pattern similar to the Australian N569 strain (prototype of BoHV-5a consistent with the subtypes observed in Brazil, the other South-American country where BoHV-5 is known to be prevalent. The genomic region of subtype b responsible for the distinct pattern was determined and amplified by PCR; specifically a point mutation was identified in glycoprotein B gene, on the BstEII restriction site, which generates the profile specific of BoHV-5b. Conclusions This is the first report of circulation of BoHV-5a in Argentina as the prevailing subtype. Therefore the circulation of BoHV-5b was restricted to a few years in Argentina, speculating that this subtype was not able to be maintained in the bovine population. The mutation in the gB gene is associated with the difference in the restriction patterns between subtypes "a" and "b".

  11. The truncation of stellar discs : The magnetic hypothesis

    NARCIS (Netherlands)

    Battaner, E; Florido, E; Jimenez-Vicente, J

    2002-01-01

    We propose a hypothesis of the truncation of stellar discs based on the magnetic model of the rotation curve of spiral galaxies. Once the disc had formed and acquired its present structure, approximately, three balanced forces were acting on the initial gas: gravity and magnetic forces, inwards, and

  12. The truncated Second Main Theorem and uniqueness theorems

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    In this paper, we first establish a truncated Second Main Theorem for algebraically nondegenerate holomorphic mappings from the complex plane into a complex projective variety V intersecting hypersurfaces. We then prove some uniqueness results for meromorphic mappings. The result of Demailly about a partial solution to the Fujita’s conjecture is used.

  13. Measuring a truncated disk in Aquila X-1

    DEFF Research Database (Denmark)

    King, Ashley L.; Tomsick, John A.; Miller, Jon M.

    2016-01-01

    We present NuSTAR and Swift observations of the neutron star Aquila X-1 during the peak of its 2014 July outburst. The spectrum is soft with strong evidence for a broad Fe Kα line. Modeled with a relativistically broadened reflection model, we find that the inner disk is truncated with an inner r...

  14. Successive superalgebraic truncations from the four-dimensional maximal supergravity

    CERN Document Server

    Kim, C H; Kim, K Y; Kim, Y; Kim, Chang Ho; Park, Young Jai; Kim, Kee Yong; Kim, Yongduk

    1994-01-01

    We study the four-dimensional {\\it N}=8 maximal supergravity in the context of Lie superalgebra SU(8/1). All possible successive superalgebraic truncations from four-dimensional {\\it N}=8 theory to {\\it N}=7, 6, \\cdots, 1 supergravity theories are systematically realized as sub-superalgebra chains of SU(8/1) by using the Kac-Dynkin weight techniques.

  15. Truncated hemoglobins in actinorhizal nodules of Datisca glomerata

    NARCIS (Netherlands)

    Pawlowski, K.; Jacobsen, K.R.; Alloisio, N.; Denison, R.F.; Klein, M.; Tjepkema, J.D.; Winzer, T.; Sirrenberg, A.; Guan, C.; Berry, A.M.

    2007-01-01

    Three types of hemoglobins exist in higher plants, symbiotic, non-symbiotic, and truncated hemoglobins. Symbiotic (class II) hemoglobins play a role in oxygen supply to intracellular nitrogen-fixing symbionts in legume root nodules, and in one case ( Parasponia Sp.), a non-symbiotic (class I) hemogl

  16. Truncation Method for Operators with Disconnected Essential Spectrum

    Indian Academy of Sciences (India)

    M N N Namboodiri

    2002-02-01

    In this short paper, the usage of truncation method to get information about essential spectrum of bounded as well as semi-bounded linear operators on separable Hilbert spaces, is investigated. In addition to this, the problem of predicting the gaps in the essential spectrum of self-adjoint operators, linear algebraically is also considered.

  17. Truncated hemoglobins in actinorhizal nodules of Datisca glomerata

    NARCIS (Netherlands)

    Pawlowski, K.; Jacobsen, K.R.; Alloisio, N.; Denison, R.F.; Klein, M.; Tjepkema, J.D.; Winzer, T.; Sirrenberg, A.; Guan, C.; Berry, A.M.

    2007-01-01

    Three types of hemoglobins exist in higher plants, symbiotic, non-symbiotic, and truncated hemoglobins. Symbiotic (class II) hemoglobins play a role in oxygen supply to intracellular nitrogen-fixing symbionts in legume root nodules, and in one case ( Parasponia Sp.), a non-symbiotic (class I)

  18. Scavenger receptor AI/II truncation, lung function and COPD

    DEFF Research Database (Denmark)

    Thomsen, M; Nordestgaard, B G; Tybjaerg-Hansen, A

    2011-01-01

    The scavenger receptor A-I/II (SRA-I/II) on alveolar macrophages is involved in recognition and clearance of modified lipids and inhaled particulates. A rare variant of the SRA-I/II gene, Arg293X, truncates the distal collagen-like domain, which is essential for ligand recognition. We tested whet...

  19. On Estimating the Parameters of Truncated Trivariate Normal Distributions

    Directory of Open Access Journals (Sweden)

    M. N. Bhattacharyya

    1969-07-01

    Full Text Available Maximum likehood estimates of the parameters of a trivariate normal distribution, with single truncation on two-variates, have been derived in this paper. The information matrix has also been given from which the asymptotic variances and covariances might be obtained for the estimates of the parameters of the restricted variables. Numerical examples have been worked out.

  20. Upper-truncated Power Laws in Natural Systems

    Science.gov (United States)

    Burroughs, S. M.; Tebbens, S. F.

    - When a cumulative number-size distribution of data follows a power law, the data set is often considered fractal since both power laws and fractals are scale invariant. Cumulative number-size distributions for data sets of many natural phenomena exhibit a ``fall-off '' from a power law as the measured object size increases. We demonstrate that this fall-off is expected when a cumulative data set is truncated at large object size. We provide a generalized equation, herein called the General Fitting Function (GFF), that describes an upper-truncated cumulative number-size distribution based on a power law. Fitting the GFF to a cumulative number-size distribution yields the coefficient and exponent of the underlying power law and a parameter that characterizes the upper truncation. Possible causes of upper truncation include data sampling limitations (spatial or temporal) and changes in the physics controlling the object sizes. We use the GFF method to analyze four natural systems that have been studied by other approaches: forest fire area in the Australian Capital Territory; fault offsets in the Vernejoul coal field; hydrocarbon volumes in the Frio Strand Plain exploration play; and fault lengths on Venus. We demonstrate that a traditional approach of fitting a power law directly to the cumulative number-size distribution estimates too negative an exponent for the power law and overestimates the fractal dimension of the data set. The four systems we consider are well fit by the GFF method, suggesting they have properties characterized by upper-truncated power laws.

  1. Comparison of strain fields in truncated and un-truncated quantum dots in stacked InAs/GaAs nanostructures with varying stacking periods

    CERN Document Server

    Shin, H; Yoo, Y H

    2003-01-01

    Strain fields in truncated and un-truncated InAs quantum dots with the same height and base length have been compared numerically when the dots are vertically stacked in a GaAs matrix at various stacking periods. The compressive hydrostatic strain in truncated dots decreases slightly as compared with the un-truncated dots without regard to the stacking period studied. However, the reduction in tensile biaxial strain, compressive radial strain and tensile axial strain was salient in the truncated dot and the reduction increased with decreasing stacking period. From such changes in strain, changes in the band gap and related properties are anticipated.

  2. Investigation of HV/HR-CMOS technology for the ATLAS Phase-II Strip Tracker Upgrade

    Energy Technology Data Exchange (ETDEWEB)

    Fadeyev, V., E-mail: fadeyev@ucsc.edu [Santa Cruz Institute for Particle Physics, University of California, Santa Cruz, CA 95064 (United States); Galloway, Z.; Grabas, H.; Grillo, A.A.; Liang, Z.; Martinez-Mckinney, F.; Seiden, A.; Volk, J. [Santa Cruz Institute for Particle Physics, University of California, Santa Cruz, CA 95064 (United States); Affolder, A.; Buckland, M.; Meng, L. [Department of Physics, University of Liverpool, O. Lodge Laboratory, Oxford Street, Liverpool L69 7ZE (United Kingdom); Arndt, K.; Bortoletto, D.; Huffman, T.; John, J.; McMahon, S.; Nickerson, R.; Phillips, P.; Plackett, R.; Shipsey, I. [Department of Physics, Oxford University, Oxford (United Kingdom); and others

    2016-09-21

    ATLAS has formed strip CMOS project to study the use of CMOS MAPS devices as silicon strip sensors for the Phase-II Strip Tracker Upgrade. This choice of sensors promises several advantages over the conventional baseline design, such as better resolution, less material in the tracking volume, and faster construction speed. At the same time, many design features of the sensors are driven by the requirement of minimizing the impact on the rest of the detector. Hence the target devices feature long pixels which are grouped to form a virtual strip with binary-encoded z position. The key performance aspects are radiation hardness compatibility with HL-LHC environment, as well as extraction of the full hit position with full-reticle readout architecture. To date, several test chips have been submitted using two different CMOS technologies. The AMS 350 nm is a high voltage CMOS process (HV-CMOS), that features the sensor bias of up to 120 V. The TowerJazz 180 nm high resistivity CMOS process (HR-CMOS) uses a high resistivity epitaxial layer to provide the depletion region on top of the substrate. We have evaluated passive pixel performance, and charge collection projections. The results strongly support the radiation tolerance of these devices to radiation dose of the HL-LHC in the strip tracker region. We also describe design features for the next chip submission that are motivated by our technology evaluation.

  3. Optimum Scheme for Insulation System in HV Generator Based on Electromagnetic Analysis

    Directory of Open Access Journals (Sweden)

    A. Gholami

    2011-06-01

    Full Text Available Electrical insulations are one of the basic parts of electrical machinery in any sizes and characteristics. Focusing on insulating, studies on the operation of industrial-electrical machinery came to the fact that the most important part of a machine is the Stator. This fact reveals the requirement for inspection of the electrical machine insulation along with the electromagnetic tensions. Therefore with respect to insulation system improvement of stator, the HV generator can be optimized. Dielectric parameters such as insulation thickness, spacing, material types, geometry of winding and slot are major design consideration. A very powerful method available to analyze electromagnetic performance is Finite Element Method (FEM which is used in this paper. The analysis of various stator coil and slot configurations are used to design the better dielectric system to reduce electrical stresses in order to increase the power of generator in the same volume of core. These processes of optimization have been done according the proposed algorithm. In this algorithm the technical constraints have been considered. This paper describes the process used to perform classical design and improvement analysis of stator slot’s insulation with respect to objective function and constraints.

  4. A Monolithic active pixel sensor for ionizing radiation using a 180nm HV-SOI process

    CERN Document Server

    Hemperek, Tomasz; Krüger, Hans; Wermes, Norbert

    2014-01-01

    An improved SOI-MAPS (Silicon On Insulator Monolithic Active Pixel Sensor) for ionizing radiation based on Partially Depleted High Voltage SOI technology (PD-SOI) has been developed. Similar to existing Fully Depleted SOI-based (FD-SOI) MAPS, a buried silicon oxide inter-dielectric (BOX) layer is used to separate the CMOS electronics from the handle wafer which is used as a depleted charge collection layer while FD-SOI MAPS suffer from radiation damage such as transistor threshold voltage shifts due to charge traps in the oxide layers and charge states created at the silicon oxide boundaries (back gate effect). The XFAB 180-nm HV-SOI technology offers an additional isolation by deep non-depleted implant between the BOX layer and the active circuitry witch mitigates this problem. Therefore we see in this technology a high potential to implement radiation-tolerant MAPS with fast charge collection property. The design and measurement results from a first prototype are presented including charge collection in neu...

  5. Investigation of HV/HR-CMOS technology for the ATLAS Phase-II Strip Tracker Upgrade

    Science.gov (United States)

    Fadeyev, V.; Galloway, Z.; Grabas, H.; Grillo, A. A.; Liang, Z.; Martinez-Mckinney, F.; Seiden, A.; Volk, J.; Affolder, A.; Buckland, M.; Meng, L.; Arndt, K.; Bortoletto, D.; Huffman, T.; John, J.; McMahon, S.; Nickerson, R.; Phillips, P.; Plackett, R.; Shipsey, I.; Vigani, L.; Bates, R.; Blue, A.; Buttar, C.; Kanisauskas, K.; Maneuski, D.; Benoit, M.; Di Bello, F.; Caragiulo, P.; Dragone, A.; Grenier, P.; Kenney, C.; Rubbo, F.; Segal, J.; Su, D.; Tamma, C.; Das, D.; Dopke, J.; Turchetta, R.; Wilson, F.; Worm, S.; Ehrler, F.; Peric, I.; Gregor, I. M.; Stanitzki, M.; Hoeferkamp, M.; Seidel, S.; Hommels, L. B. A.; Kramberger, G.; Mandić, I.; Mikuž, M.; Muenstermann, D.; Wang, R.; Zhang, J.; Warren, M.; Song, W.; Xiu, Q.; Zhu, H.

    2016-09-01

    ATLAS has formed strip CMOS project to study the use of CMOS MAPS devices as silicon strip sensors for the Phase-II Strip Tracker Upgrade. This choice of sensors promises several advantages over the conventional baseline design, such as better resolution, less material in the tracking volume, and faster construction speed. At the same time, many design features of the sensors are driven by the requirement of minimizing the impact on the rest of the detector. Hence the target devices feature long pixels which are grouped to form a virtual strip with binary-encoded z position. The key performance aspects are radiation hardness compatibility with HL-LHC environment, as well as extraction of the full hit position with full-reticle readout architecture. To date, several test chips have been submitted using two different CMOS technologies. The AMS 350 nm is a high voltage CMOS process (HV-CMOS), that features the sensor bias of up to 120 V. The TowerJazz 180 nm high resistivity CMOS process (HR-CMOS) uses a high resistivity epitaxial layer to provide the depletion region on top of the substrate. We have evaluated passive pixel performance, and charge collection projections. The results strongly support the radiation tolerance of these devices to radiation dose of the HL-LHC in the strip tracker region. We also describe design features for the next chip submission that are motivated by our technology evaluation.

  6. New Simulation Method of New HV Power Supply for Industrial Microwave Generators with N=2 Magnetrons

    Directory of Open Access Journals (Sweden)

    N. El Ghazal

    2013-01-01

    Full Text Available This original work treats a new simulation method of a new type of high voltage power supply for microwave generators with N magnetrons (treated case: N=2 magnetrons, used as a source of energy in the industrial applications. This new power supply is composed of a single-phase HV transformer with magnetic leakage flow, supplying two parallel cells, which multiplies the voltage and stabilizes the current. The doubler supplies one magnetron. The transformer is presented by its p equivalent circuit. Each inductance of the model is characterized by its relation "flow-current". In this paper, we present a new approach validation of the p model of the special transformer using Matlab-Simulink code. The theoretical results compared with the experimental measurements, is in good agreement with them. The use of this tool Matlab-Simulink, has allowed us to confirm the possibility of the operation of this new system without interaction between magnetrons, with a view to a possible optimization which lead to reduce the weight, the volume and the cost of implementation while ensuring the process of regulating the current in each magnetron.

  7. [Study on effects of bioelectric parameters of rats in electromagnetic radiation of HV transmission line].

    Science.gov (United States)

    Zhang, Anying; Pang, Xiaofeng; Yuan, Ping

    2007-02-01

    With the development of economy and coming of information era, the chance of exposure to electromagnetic fields with various frequencies has been increased for every human. The effects of electromagnetic radiattion on human being's health are versatile. To study the effects of bioelctronic parameters of rats in the electromagnetic radiations of HV transmission line, EEG, ECG and CMAP were measured in rats exposed to simulating high-voltage transmission line electromagnetic radiation for over one year. Brain tissues were studied by Fourier transform infrared spectroscopy. The results showed that no significant difference between exposed group and control group in EEG; however the FT-infrared spectra of brain tissues were different; the ECG of the exposed animals was considerably altered. Significant slowing of heart rate was observed in those rates exposed to EMFs; the latent period of CMAP in exposed group were not different compared with those of control group however there was a significant difference in wave amplitude of CMAP between the exposed group and control group. All results indicated that there must be some effects on bioelectric parameters of rats exposed to electromagnetic radiation of high-voltage transmission line for a long time.

  8. Reliability assessment of an OVH HV power line truss transmission tower subjected to seismic loading

    Science.gov (United States)

    Winkelmann, Karol; Jakubowska, Patrycja; Soltysik, Barbara

    2017-03-01

    The study focuses on the reliability of a transmission tower OS24 ON150 + 10, an element of an OVH HV power line, under seismic loading. In order to describe the seismic force, the real-life recording of the horizontal component of the El Centro earthquake was adopted. The amplitude and the period of this excitation are assumed random, their variation is described by Weibull distribution. The possible space state of the phenomenon is given in the form of a structural response surface (RSM methodology), approximated by an ANOVA table with directional sampling (DS) points. Four design limit states are considered: stress limit criterion for a natural load combination, criterion for an accidental combination (one-sided cable snap), vertical and horizontal translation criteria. According to these cases the HLRF reliability index β is used for structural safety assessment. The RSM approach is well suited for the analysis - it is numerically efficient, not excessively time consuming, indicating a high confidence level. Given the problem conditions, the seismic excitation is shown the sufficient trigger to the loss of load-bearing capacity or stability of the tower.

  9. Application Of The Wavelet Packet Transform For Selecting Transient Seismic Noise And Study Of Its Effect On Estimates Of The H/V Spectral Ratio

    Science.gov (United States)

    Galiana-Merino, J.; Parolai, S.

    2005-12-01

    The Horizontal-to-Vertical (H/V) spectral ratio of seismic noise has become a widely used tool in microzonation, although it has not yet been clearly established whether or not only the stationary part of the recorded signal may be used. In fact, while some studies have suggested the use of only stationary signals others have shown that including transients may improve the results. In this study, we have employed a filtering method based on the wavelet packet transform for removing the stationary part of the noise recordings in the frequency band of interest for the H/V spectral ratio. In this way, we have obtained filtered seismograms with only transients, which have been used for performing the H/V spectral ratio calculation. Moreover, we have also calculated the H/V spectral ratio selecting only stationary noise windows from the seismograms and without making any a priori selection on them. Finally, we have compared the results and analysed the influence of transient noise on the shape of the H/V spectral ratio. The analysis has been carried out on noise recordings collected at 7 stations installed in the Cologne-Bonn region (Germany). Results show that the H/V spectral ratios calculated using only stationary noise do not significantly differ from those obtained without performing any data selection, independent of the site resonance frequency and of the frequency content of the transient. On the contrary, H/V spectral ratios obtained using only transients show a large variability that may be attributed to the kind of source and the source to receiver distance. These results indicate that the effect of transient noise is negligible when the H/V spectral ratios are calculated without performing any data selection, making the H/V spectral ratio technique more attractive for urban area measurements.

  10. Barley plants over-expressing the NAC transcription factor gene HvNAC005 show stunting and delay in development combined with early senescence

    DEFF Research Database (Denmark)

    Christiansen, Michael W.; Matthewman, Colette; Podzimska-Sroka, Dagmara Agata;

    2016-01-01

    -expressing plants showed up-regulation of genes involved with secondary metabolism, hormone metabolism, stress, signalling, development, and transport. Up-regulation of senescence markers and hormone metabolism and signalling genes supports a role of HvNAC005 in the cross field of different hormone and signalling......The plant-specific NAC transcription factors have attracted particular attention because of their involvement in stress responses, senescence, and nutrient remobilization. The HvNAC005 gene of barley encodes a protein belonging to subgroup NAC-a6 of the NAC family. This study shows that HvNAC005...

  11. Ambiguities of the single spin observables in a truncated partial wave expansion for photoproduction of pseudoscalar mesons

    CERN Document Server

    Wunderlich, Y; Tiator, L

    2013-01-01

    The ambiguity problem in the truncated partial wave analysis of pseudoscalar meson photoproduction with suppressed t-channel exchanges is investigated. More precisely, the focus is set to ambiguities of the four single spin observables, $\\sigma_0$, $\\Sigma$, $T$ and $P$. For this purpose, the approach and formalism already worked out by Omelaenko in 1981 is revisited in this work. A numerical study using multipoles of the PWA solution MAID2007 shows how, for ideal circumstances, only one additional double polarization observable can resolve all ambiguities.

  12. S-Wave Velocity Structure of Taipei Basin by Using the Simulation of Microtremor H/V Ratios

    Science.gov (United States)

    Cheng-Yi, Lin; Kuo-Liang, Wen; Che-Min, Lin

    2014-05-01

    In this report here the investigation of the S-wave velocity structures of the Taipei basin which is located in the northern Taiwan. Previous study, the dense microtremor measurement analysis have been confirmed in Taipei Basin. However, within the basin around the layer effects on seismic site characterization and contribution have still needed to clarify more details, as the strata in Taipei basin with reference to estimate ground motion prediction. The detail site response all over the Taipei basin has been studied by using the H/V ratios of dense microtremor surveys. In this study, a method, GA-Haskell, combining Genetic Algorithm and Thomson-Haskell propagator matrix was used to simulate the microtremor H/V ratios according to the previous results of dense microtremor surveys. The near-surface S-wave velocity structures of over 400 sites in the Taipei basin were evaluated by the simulations of the H/V ratios. Through the numerous microtremor data are helpful to figure the S-wave velocity and thickness of the Sungshan Formation and the other deeper formations which control the seismic site-effect in the basin. While many strong motion stations have also been performed microtremor measurement and single station spectrum to understand the earthquake site characteristics analysis. Compared with other research results, confirmed the applicability of the method for estimating the velocity structure in Taipei Basin. Finally, accord with the actual site earthquake and microtremor response, established a complete and detailed S-wave velocity model of the Taipei basin. It will benefit the strong motion prediction and simulation in the future. Key Words: Taipei Basin, Microtremor, H/V Ratio, S-wave Velocity, Site Effect

  13. Various truncations in Painlevé analysis of PDEs

    CERN Document Server

    Conte, R

    1998-01-01

    The ``truncation procedure'' initiated by Weiss et al. is best understood as a Darboux transformation. If it leads to the Lax pair of the PDE under study, the Bäcklund transformation follows by an elimination, thus proving the integrability. We present the state of the art of this powerful technique. The easy situations were all handled by the WTC one-family truncation and its homographically invariant version. An updated version of this method has been recently developed, which is now able to handle the Kaup-Kupershmidt and Tzitzéica equations. It incorporates a new feature, namely the distinction between two entire functions usually mingled, which are shown to be linked by formulae established by Gambier for his classification.

  14. Kernel conditional quantile estimator under left truncation for functional regressors

    Directory of Open Access Journals (Sweden)

    Nacéra Helal

    2016-01-01

    Full Text Available Let \\(Y\\ be a random real response which is subject to left-truncation by another random variable \\(T\\. In this paper, we study the kernel conditional quantile estimation when the covariable \\(X\\ takes values in an infinite-dimensional space. A kernel conditional quantile estimator is given under some regularity conditions, among which in the small-ball probability, its strong uniform almost sure convergence rate is established. Some special cases have been studied to show how our work extends some results given in the literature. Simulations are drawn to lend further support to our theoretical results and assess the behavior of the estimator for finite samples with different rates of truncation and sizes.

  15. The truncation of stellar discs the magnetic hypothesis

    CERN Document Server

    Battaner, E

    2002-01-01

    We propose a hypothesis of the truncation of stellar discs based on the magnetic model of the rotation curve of spiral galaxies. Once the disc had formed and acquired its present structure, approximately, three balanced forces were acting on the initial gas: gravity and magnetic forces, inwards, and centrifugal force. When stars are formed from this gas, the magnetic force is suddenly suppressed. Gravitation alone cannot retain the newly-formed stars and at birth places beyond a certain galactocentric radius they escape to intergalactic space. This radius is the so-called ``truncation radius'', which is predicted to be at about 4-5 disc radial scale lengths, in promising agreement with observations.

  16. Hamiltonian truncation approach to quenches in the Ising field theory

    CERN Document Server

    Rakovszky, Tibor; Collura, Mario; Kormos, Márton; Takács, Gábor

    2016-01-01

    In contrast to lattice systems where powerful numerical techniques such as matrix product state based methods are available to study the non-equilibrium dynamics, the non-equilibrium behaviour of continuum systems is much harder to simulate. We demonstrate here that Hamiltonian truncation methods can be efficiently applied to this problem, by studying the quantum quench dynamics of the 1+1 dimensional Ising field theory using a truncated free fermionic space approach. After benchmarking the method with integrable quenches corresponding to changing the mass in a free Majorana fermion field theory, we study the effect of an integrability breaking perturbation by the longitudinal magnetic field. In both the ferromagnetic and paramagnetic phases of the model we find persistent oscillations with frequencies set by the low-lying particle excitations even for moderate size quenches. In the ferromagnetic phase these particles are the various non-perturbative confined bound states of the domain wall excitations, while...

  17. A Semidefinite Approach for Truncated K-Moment Problem

    CERN Document Server

    Helton, J William

    2011-01-01

    A truncated moment sequence (tms) of degree d is a vector indexed by monomials whose degree is at most d. Let K be a semialgebraic set.The truncated K-moment problem (TKMP) is: when does a tms y admit a positive Borel measure supported? This paper proposes a semidefinite programming (SDP) approach for solving TKMP. When K is compact, we get the following results: whether a tms y of degree d admits a K-measure or notcan be checked via solving a sequence of SDP problems; when y admits no K-measure, a certificate will be given; when y admits a K-measure, a representing measure for y would be obtained from solving the SDP under some necessary and some sufficient conditions. Moreover, we also propose a practical SDP method for finding flat extensions, which in our numerical experiments always finds a finitely atomic representing measure for a tms when it admits one.

  18. Dynamics of Large-Truncated Mooring Systems Coupled with A Catenary Moored Semi-Submersible

    Institute of Scientific and Technical Information of China (English)

    徐胜; 嵇春艳

    2014-01-01

    With the floating structures pushing their activities to the ultra-deep water, model tests have presented a challenge due to the limitation of the existing wave basins. Therefore, the concept of truncated mooring system is implemented to replace the full depth mooring system in the model tests, which aims to have the same dynamic responses as the full depth system. The truncated mooring system plays such a significant role that extra attention should be paid to the mooring systems with large truncation factor. Three different types of large truncation factor mooring system are being employed in the simulations, including the homogenously truncated mooring system, non-homogenously truncated mooring system and simplified truncated mooring system. A catenary moored semi-submersible operating at 1000 m water depth is presented. In addition, truncated mooring systems are proposed at the truncated water depth of 200 m. In order to explore the applicability of these truncated mooring systems, numerical simulations of the platform’s surge free decay interacting with three different styles of truncated mooring systems are studied in calm water. Furthermore, the mooring-induced damping of the truncated mooring systems is simulated in the regular wave. Finally, the platform motion responses and mooring line dynamics are simulated in irregular wave. All these simulations are implemented by employing full time domain coupled dynamic analysis, and the results are compared with those of the full depth simulations in the same cases. The results show that the mooring-induced damping plays a significant role in platform motion responses, and all truncated mooring systems are suitable for model tests with appropriate truncated mooring line diameters. However, a large diameter is needed for simplified truncated mooring lines. The suggestions are given to the selection of truncated mooring system for different situations as well as to the truncated mooring design criteria.

  19. Bounded symbols and reproducing kernel thesis for truncated Toeplitz operators

    CERN Document Server

    Baranov, A; Fricain, Emmanuel; Mashreghi, Javad; Timotin, Dan

    2009-01-01

    Compressions of Toeplitz operators to coinvariant subspaces of $H^2$ are called \\emph{truncated Toeplitz operators}. We study two questions related to these operators. The first, raised by Sarason, is whether boundedness of the operator implies the existence of a bounded symbol; the second is the reproducing kernel thesis. We show that in general the answer to the first question is negative, and we exhibit some classes of spaces for which the answers to both questions are positive.

  20. BALANCED TRUNCATED MODELS OF RC INTERCONNECT CIRCUITS AND THEIR SIMULATION

    Institute of Scientific and Technical Information of China (English)

    Yuan Baoguo; Wang Ben; Wang Shengguo

    2005-01-01

    The Balanced Truncation Method (BTM) is applied to an even distributed RC interconnect case by using Wang's closed-forms of even distributed RC interconnect models. The results show that extremely high order RC interconnect can be high-accurately approximated by only third order balanced model. Related simulations are executed in both time domain and frequency domain. The results may be applied to VLSI interconnect model reduction and design.

  1. Bio-plastic (P-3HB-co-3HV) from Bacillus circulans (MTCC 8167) and its biodegradation.

    Science.gov (United States)

    Phukon, Pinkee; Saikia, Jyoti Prasad; Konwar, Bolin Kumar

    2012-04-01

    Polyhydroxyalkanoates (PHAs) are naturally occurring polyesters synthesized by bacteria for carbon and energy storage and it has commercial potential as bioplastic. The bacterial species Bacillus circulans MTCC 8167, isolated from crude oil contaminated soil, can efficiently produce medium chain length polyhydroxyalkanoates (P-3HB-co-3HV) from cheap carbon sources like dextrose. The molecular mass of P-3HB-co-3HV was reported as 5.1×10(4)Da with polydispersity index of 1.21 by gel permeation chromatography. In the present investigation different bacteria and fungi species were used for testing the biodegradability of the extracted polymer. The FTIR spectra of the biodegraded PHBV film showed a decrease in the peak from 1735 cm(-1) (untreated film) to 1675 cm(-1), and disappearance of a peak present in the control at 2922 cm(-1) indicating the breakdown of ester (>C=O) or O-R group and -C=H bond, respectively. From biodegradability testing, the tested microorganisms were found to have decisive contribution to the biodegradation of P-3HB-co-3HV polymer.

  2. Barley HvPAPhy_a as transgene provides high and stable phytase activities in mature barley straw and in grains.

    Science.gov (United States)

    Holme, Inger Baeksted; Dionisio, Giuseppe; Madsen, Claus Krogh; Brinch-Pedersen, Henrik

    2017-04-01

    The phytase purple acid phosphatase (HvPAPhy_a) expressed during barley seed development was evaluated as transgene for overexpression in barley. The phytase was expressed constitutively driven by the cauliflower mosaic virus 35S-promoter, and the phytase activity was measured in the mature grains, the green leaves and in the dry mature vegetative plant parts left after harvest of the grains. The T2 -generation of HvPAPhy_a transformed barley showed phytase activity increases up to 19-fold (29 000 phytase units (FTU) per kg in mature grains). Moreover, also in green leaves and mature dry straw, phytase activities were increased significantly by 110-fold (52 000 FTU/kg) and 57-fold (51 000 FTU/kg), respectively. The HvPAPhy_a-transformed barley plants with high phytase activities possess triple potential utilities for the improvement of phosphate bioavailability. First of all, the utilization of the mature grains as feed to increase the release of bio-available phosphate and minerals bound to the phytate of the grains; secondly, the utilization of the powdered straw either directly or phytase extracted hereof as a supplement to high phytate feed or food; and finally, the use of the stubble to be ploughed into the soil for mobilizing phytate-bound phosphate for plant growth. © 2016 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd.

  3. Truncatable bootstrap equations in algebraic form and critical surface exponents

    CERN Document Server

    Gliozzi, Ferdinando

    2016-01-01

    We describe examples of drastic truncations of conformal bootstrap equations encoding much more information than that obtained by a direct numerical approach. A three-term truncation of the four point function of a free scalar in any space dimensions provides algebraic identities among conformal block derivatives which generate the exact spectrum of the infinitely many primary operators contributing to it. In boundary conformal field theories, we point out that the appearance of free parameters in the solutions of bootstrap equations is not an artifact of truncations, rather it reflects a physical property of permeable conformal interfaces which are described by the same equations. Surface transitions correspond to isolated points in the parameter space. We are able to locate them in the case of 3d Ising model, thanks to a useful algebraic form of 3d boundary bootstrap equations. It turns out that the low-lying spectra of the surface operators in the ordinary and the special transitions of 3d Ising model form...

  4. On consistent truncations in ${\\cal N}=2^*$ holography

    CERN Document Server

    Balasubramanian, Venkat

    2013-01-01

    Although Pilch-Warner (PW) gravitational renormalization group flow [arXiv:hep-th/0004063] passes a number of important consistency checks to be identified as a holographic dual to a large-$N$ $SU(N)$ ${\\cal N}=2^*$ supersymmetric gauge theory, it fails to reproduce the free energy of the theory on $S^4$, computed with the localization techniques. This disagreement points to the existence of a larger dual gravitational consistent truncation, which in the gauge theory flat-space limit reduces to a PW flow. Such truncation was recently identified by Bobev-Elvang-Freedman-Pufu (BEFP) [arXiv:1311.1508]. Additional bulk scalars of the BEFP gravitation truncation might lead to destabilization of the finite-temperature deformed PW flows, and thus modify the low-temperature thermodynamics and hydrodynamics of ${\\cal N} =2^*$ plasma. We compute the quasinormal spectrum of these bulk scalar fields in the thermal PW flows and demonstrate that these modes do not condense, as long as the masses of the ${\\cal N}=2^*$ hyper...

  5. Evidence for Truncated Exponential Probability Distribution of Earthquake Slip

    KAUST Repository

    Thingbaijam, Kiran K. S.

    2016-07-13

    Earthquake ruptures comprise spatially varying slip on the fault surface, where slip represents the displacement discontinuity between the two sides of the rupture plane. In this study, we analyze the probability distribution of coseismic slip, which provides important information to better understand earthquake source physics. Although the probability distribution of slip is crucial for generating realistic rupture scenarios for simulation-based seismic and tsunami-hazard analysis, the statistical properties of earthquake slip have received limited attention so far. Here, we use the online database of earthquake source models (SRCMOD) to show that the probability distribution of slip follows the truncated exponential law. This law agrees with rupture-specific physical constraints limiting the maximum possible slip on the fault, similar to physical constraints on maximum earthquake magnitudes.We show the parameters of the best-fitting truncated exponential distribution scale with average coseismic slip. This scaling property reflects the control of the underlying stress distribution and fault strength on the rupture dimensions, which determines the average slip. Thus, the scale-dependent behavior of slip heterogeneity is captured by the probability distribution of slip. We conclude that the truncated exponential law accurately quantifies coseismic slip distribution and therefore allows for more realistic modeling of rupture scenarios. © 2016, Seismological Society of America. All rights reserverd.

  6. Diffusive low optical depth particle disks truncated by planets

    CERN Document Server

    Quillen, Alice C

    2008-01-01

    Two dimensional particle disks in proximity to a planet are numerically integrated to determine when a planet in a circular orbit can truncate a particle disk. Collisions are treated by giving each particle a series of velocity perturbations during the integration. We estimate the mass of a planet required to truncate a particle disk as a function of collision rate, related to the disk optical depth, and velocity perturbation size, related to the disk velocity dispersion. We find that for particle disks in the regime estimated for debris disks, a Neptune mass planet is sufficiently massive to truncate the disk. If both the velocity dispersion and the disk optical depth are low (dispersion less than approximately 0.02 in units of circular motion, and optical depth less than 10^-4) then an Earth mass planet suffices. We find that the disk is smooth and axisymmetric unless the velocity perturbation is small and the planet mass is of order or greater than a Neptune mass in which case azimuthal structure is seen n...

  7. Near infrared observations of the truncation of stellar disks

    CERN Document Server

    Florido, E; Guijarro, A; Garzón, F; Jiménez-Vicente, J; Florido, Estrella; Battaner, Eduardo; Guijarro, Ana; Garzon, Francisco; Jimenez-Vicente, Jorge

    2001-01-01

    We present a first study of truncation of the stellar disks of spiral galaxies in the near infrared. Observations of NGC4013, NGC4217, NGC6504 and NGC5981 were made with the CAIN NIR camera on the CST in Tenerife. This wavelength range provides the best description of the phenomenon, not only because extinction effects are minimized, but also because the distribution of the old stellar population is directly obtained. The four galaxies are edge-on and an inversion method was developed to obtain the deprojected profiles. We did not assume any model of the different galactic components. The ``truncation curve'', i.e. T(R)= mu(R)- mu_{D}(R), where mu is the actual surface brightness in mag/arcsec^2 and mu_{D} the exponential disk surface brightness, has been obtained with unprecedented precision. It is suggested that T(R) is proportional to (R_{t}-R)^{-1}, where R_{t} is the truncation radius, i.e. the radius beyond which no star is observed.

  8. Truncatable bootstrap equations in algebraic form and critical surface exponents

    Science.gov (United States)

    Gliozzi, Ferdinando

    2016-10-01

    We describe examples of drastic truncations of conformal bootstrap equations encoding much more information than that obtained by a direct numerical approach. A three-term truncation of the four point function of a free scalar in any space dimensions provides algebraic identities among conformal block derivatives which generate the exact spectrum of the infinitely many primary operators contributing to it. In boundary conformal field theories, we point out that the appearance of free parameters in the solutions of bootstrap equations is not an artifact of truncations, rather it reflects a physical property of permeable conformal interfaces which are described by the same equations. Surface transitions correspond to isolated points in the parameter space. We are able to locate them in the case of 3d Ising model, thanks to a useful algebraic form of 3d boundary bootstrap equations. It turns out that the low-lying spectra of the surface operators in the ordinary and the special transitions of 3d Ising model form two different solutions of the same polynomial equation. Their interplay yields an estimate of the surface renormalization group exponents, y h = 0 .72558(18) for the ordinary universality class and y h = 1 .646(2) for the special universality class, which compare well with the most recent Monte Carlo calculations. Estimates of other surface exponents as well as OPE coefficients are also obtained.

  9. Truncatable bootstrap equations in algebraic form and critical surface exponents

    Energy Technology Data Exchange (ETDEWEB)

    Gliozzi, Ferdinando [Dipartimento di Fisica, Università di Torino andIstituto Nazionale di Fisica Nucleare - sezione di Torino,Via P. Giuria 1, Torino, I-10125 (Italy)

    2016-10-10

    We describe examples of drastic truncations of conformal bootstrap equations encoding much more information than that obtained by a direct numerical approach. A three-term truncation of the four point function of a free scalar in any space dimensions provides algebraic identities among conformal block derivatives which generate the exact spectrum of the infinitely many primary operators contributing to it. In boundary conformal field theories, we point out that the appearance of free parameters in the solutions of bootstrap equations is not an artifact of truncations, rather it reflects a physical property of permeable conformal interfaces which are described by the same equations. Surface transitions correspond to isolated points in the parameter space. We are able to locate them in the case of 3d Ising model, thanks to a useful algebraic form of 3d boundary bootstrap equations. It turns out that the low-lying spectra of the surface operators in the ordinary and the special transitions of 3d Ising model form two different solutions of the same polynomial equation. Their interplay yields an estimate of the surface renormalization group exponents, y{sub h}=0.72558(18) for the ordinary universality class and y{sub h}=1.646(2) for the special universality class, which compare well with the most recent Monte Carlo calculations. Estimates of other surface exponents as well as OPE coefficients are also obtained.

  10. Iterative truncated arithmetic mean filter and its properties.

    Science.gov (United States)

    Jiang, Xudong

    2012-04-01

    The arithmetic mean and the order statistical median are two fundamental operations in signal and image processing. They have their own merits and limitations in noise attenuation and image structure preservation. This paper proposes an iterative algorithm that truncates the extreme values of samples in the filter window to a dynamic threshold. The resulting nonlinear filter shows some merits of both the fundamental operations. Some dynamic truncation thresholds are proposed that guarantee the filter output, starting from the mean, to approach the median of the input samples. As a by-product, this paper unveils some statistics of a finite data set as the upper bounds of the deviation of the median from the mean. Some stopping criteria are suggested to facilitate edge preservation and noise attenuation for both the long- and short-tailed distributions. Although the proposed iterative truncated mean (ITM) algorithm is not aimed at the median, it offers a way to estimate the median by simple arithmetic computing. Some properties of the ITM filters are analyzed and experimentally verified on synthetic data and real images.

  11. Enhancing the strength of an optical trap by truncation.

    Directory of Open Access Journals (Sweden)

    Vanessa R M Rodrigues

    Full Text Available Optical traps (tweezers are beginning to be used with increasing efficacy in diverse studies in the biological and biomedical sciences. We report here results of a systematic study aimed at enhancing the efficiency with which dielectric (transparent materials can be optically trapped. Specifically, we investigate how truncation of the incident laser beam affects the strength of an optical trap in the presence of a circular aperture. Apertures of various sizes have been used by us to alter the beam radius, thereby changing the effective numerical aperture and intensity profile. We observe significant enhancement of the radial and axial trap stiffness when an aperture is used to truncate the beam compared to when no aperture was used, keeping incident laser power constant. Enhancement in trap stiffness persists even when the beam intensity profile is modulated. The possibility of applying truncation to multiple traps is explored; to this end a wire mesh is utilized to produce multiple trapping that also alters the effective numerical aperture. The use of a mesh leads to reduction in trap stiffness compared to the case when no wire mesh is used. Our findings lead to a simple-to-implement and inexpensive method of significantly enhancing optical trapping efficiency under a wide range of circumstances.

  12. Population-genetic analysis of HvABCG31 promoter sequence in wild barley (Hordeum vulgare ssp. spontaneum

    Directory of Open Access Journals (Sweden)

    Ma Xiaoying

    2012-09-01

    Full Text Available Abstract Background The cuticle is an important adaptive structure whose origin played a crucial role in the transition of plants from aqueous to terrestrial conditions. HvABCG31/Eibi1 is an ABCG transporter gene, involved in cuticle formation that was recently identified in wild barley (Hordeum vulgare ssp. spontaneum. To study the genetic variation of HvABCG31 in different habitats, its 2 kb promoter region was sequenced from 112 wild barley accessions collected from five natural populations from southern and northern Israel. The sites included three mesic and two xeric habitats, and differed in annual rainfall, soil type, and soil water capacity. Results Phylogenetic analysis of the aligned HvABCG31 promoter sequences clustered the majority of accessions (69 out of 71 from the three northern mesic populations into one cluster, while all 21 accessions from the Dead Sea area, a xeric southern population, and two isolated accessions (one from a xeric population at Mitzpe Ramon and one from the xeric ‘African Slope’ of “Evolution Canyon” formed the second cluster. The southern arid populations included six haplotypes, but they differed from the consensus sequence at a large number of positions, while the northern mesic populations included 15 haplotypes that were, on average, more similar to the consensus sequence. Most of the haplotypes (20 of 22 were unique to a population. Interestingly, higher genetic variation occurred within populations (54.2% than among populations (45.8%. Analysis of the promoter region detected a large number of transcription factor binding sites: 121–128 and 121–134 sites in the two southern arid populations, and 123–128,125–128, and 123–125 sites in the three northern mesic populations. Three types of TFBSs were significantly enriched: those related to GA (gibberellin, Dof (DNA binding with one finger, and light. Conclusions Drought stress and adaptive natural selection may have been important

  13. Seismic ambient noise H/V spectral ratio using the ACA (autocorrelations of coda of autocorrelations) approach

    Science.gov (United States)

    Sanchez-Sesma, F. J.; Piña, J.; Campillo, M.; Luzón, F.; García-Jerez, A.; Albarello, D.; Lunedei, E.

    2012-12-01

    The seismic ambient noise horizontal-to-vertical spectral ratios (NHVSR) are valuable for microzonation, and seismic prospecting. This is particularly true for low-cost dense spatial sampling projects. Arai and Tokimatsu (2004) proposed to use average energy densities to compose the ratios. It means that H/V comes from the square root of the ratio of averages. On the other hand, a popular approach makes the average of spectral ratios. For ergodic processes peak values are usually the same using these two approaches. Sometimes however, the observations are insufficient and computed values for low frequencies display large variability and the corresponding H/V estimates may be inaccurate. The bias caused by localized sources may be the source of errors in the estimates. In this work we propose to compute the NHVSR using the Autocorrelations of Coda of Autocorrelations. This ACA approach is inspired in the work by Stehly et al. (2008). They used the Correlations of Coda of Correlations (C3) to isotropize the field. In our ACA approach the whole time series, say of 30 minutes, for each component is autocorrelated and the averages of the spectral density of selected windows (late coda windows are eliminated) are then improved estimates of directional energy densities. The computation of NHVSR using ACA appears more stable and free of transient effects. It remains to establish how this may be accounted for in forward calculation of H/V spectral ratios for models like a layered medium (e.g. Sánchez-Sesma et al., 2011; Albarello and Lunedei, 2011). This will require further scrutiny. References. Albarello, D. & E. Lunedei (2011). Structure of ambient vibration wavefield in the frequency range of engineering interest ([0.5, 20] Hz): insights from numerical modelling. Near Surface Geophysics 9, 543-559. Arai, H. & K. Tokimatsu (2004). S-wave velocity profiling by inversion of microtremor H/V spectrum, Bull. Seismol. Soc. Am. 94, 53-63. Sánchez-Sesma, F. J., M. Rodr

  14. Transfer impedance simulation and measurement methods to analyse shielding behaviour of HV cables used in Electric-Vehicles and Hybrid-Electric-Vehicles

    Science.gov (United States)

    Mushtaq, Abid; Frei, Stephan

    2016-09-01

    In the power drive system of the Electric Vehicles (EVs) and Hybrid Electric Vehicles (HEVs), High Voltage (HV) cables play a major role in evaluating the EMI of the whole system. Transfer impedance (ZT) is the most commonly used performance parameter for the HV cable. To analyse and design HV cables and connectors with better shielding effectiveness (SE), appropriate measurement and simulation methods are required. In this paper, Ground Plate Method (GPM) with improvements has been proposed to measure ZT. Use of low-frequency ferrites to avoid ground-loop effects has also been investigated. Additionally, a combination of analytical model with a circuit model has been implemented to simulate limitations (frequency response) of the test setup. Also parametrical studies using the analytical model have been performed to analyse the shielding behaviour of HV cables.

  15. Appendage modal coordinate truncation criteria in hybrid coordinate dynamic analysis. [for spacecraft attitude control

    Science.gov (United States)

    Likins, P.; Ohkami, Y.; Wong, C.

    1976-01-01

    The paper examines the validity of the assumption that certain appendage-distributed (modal) coordinates can be truncated from a system model without unacceptable degradation of fidelity in hybrid coordinate dynamic analysis for attitude control of spacecraft with flexible appendages. Alternative truncation criteria are proposed and their interrelationships defined. Particular attention is given to truncation criteria based on eigenvalues, eigenvectors, and controllability and observability. No definitive resolution of the problem is advanced, and exhaustive study is required to obtain ultimate truncation criteria.

  16. Metabolo-transcriptome profiling of barley reveals induction of chitin elicitor receptor kinase gene (HvCERK1) conferring resistance against Fusarium graminearum.

    Science.gov (United States)

    Karre, Shailesh; Kumar, Arun; Dhokane, Dhananjay; Kushalappa, Ajjamada C

    2017-02-01

    We report plausible disease resistance mechanisms induced by barley resistant genotype CI89831 against Fusarium head blight (FHB) based on metabolo-transcriptomics approach. We identified HvCERK1 as a candidate gene for FHB resistance, which is functional in resistant genotype CI9831 but non-functional in susceptible cultivars H106-371 and Zhedar-2. For the first time, we were able to show a hierarchy of regulatory genes that regulated downstream biosynthetic genes that eventually produced resistance related metabolites that reinforce the cell walls to contain the pathogen progress in plant. The HvCERK1 can be used for replacing in susceptible commercial cultivars, if non-functional, based on genome editing. Fusarium head blight (FHB) management is a great challenge in barley and wheat production worldwide. Though barley genome sequence and advanced omics technologies are available, till date none of the resistance mechanisms has been clearly deciphered. Hence, this study was aimed at identifying candidate gene(s) and elucidating resistance mechanisms induced by barley resistant genotype CI9831 based on integrated metabolomics and transcriptomics approach. Following Fusarium graminearum infection, we identified accumulation of specific set of induced secondary metabolites, belonging to phenylpropanoid, hydroxycinnamic acid (HCAA) and jasmonic acid pathways, and their biosynthetic genes. In association with these, receptor kinases such as chitin elicitor receptor kinase (HvCERK1) and protein kinases such as MAP kinase 3 (HvMPK3) and MAPK substrate 1 (HvMKS1), and transcription factors such as HvERF1/5, HvNAC42, HvWRKY23 and HvWRKY70 were also found upregulated with high fold change. Polymorphism studies across three barley genotypes confirmed the presence of mutations in HvCERK1 gene in two susceptible genotypes, isolating this gene as a potential candidate for FHB resistance. Further, the silencing of functional HvCERK1 gene in the resistant genotype CI9831

  17. A truncated Kv1.1 protein in the brain of the megencephaly mouse: expression and interaction

    Directory of Open Access Journals (Sweden)

    Århem Peter

    2005-11-01

    Full Text Available Abstract Background The megencephaly mouse, mceph/mceph, is epileptic and displays a dramatically increased brain volume and neuronal count. The responsible mutation was recently revealed to be an eleven base pair deletion, leading to a frame shift, in the gene encoding the potassium channel Kv1.1. The predicted MCEPH protein is truncated at amino acid 230 out of 495. Truncated proteins are usually not expressed since nonsense mRNAs are most often degraded. However, high Kv1.1 mRNA levels in mceph/mceph brain indicated that it escaped this control mechanism. Therefore, we hypothesized that the truncated Kv1.1 would be expressed and dysregulate other Kv1 subunits in the mceph/mceph mice. Results We found that the MCEPH protein is expressed in the brain of mceph/mceph mice. MCEPH was found to lack mature (Golgi glycosylation, but to be core glycosylated and trapped in the endoplasmic reticulum (ER. Interactions between MCEPH and other Kv1 subunits were studied in cell culture, Xenopus oocytes and the brain. MCEPH can form tetramers with Kv1.1 in cell culture and has a dominant negative effect on Kv1.2 and Kv1.3 currents in oocytes. However, it does not retain Kv1.2 in the ER of neurons. Conclusion The megencephaly mice express a truncated Kv1.1 in the brain, and constitute a unique tool to study Kv1.1 trafficking relevant for understanding epilepsy, ataxia and pathologic brain overgrowth.

  18. Fitting and goodness-of-fit test of non-truncated and truncated power-law distributions

    CERN Document Server

    Corral, Alvaro

    2012-01-01

    Power-law distributions contain precious information about a large variety of processes in geoscience and elsewhere. Although there are sound theoretical grounds for these distributions, the empirical evidence in favor of power laws has been traditionally weak. Recently, Clauset et al. have proposed a systematic method to find over which range (if any) a certain distribution behaves as a power law. However, their method has been found to fail, in the sense that true (simulated) power-law tails are not recognized as such in some instances, and then the power-law hypothesis is rejected. Moreover, the method does not work well when extended to power-law distributions with an upper truncation. We explain in detail a similar but alternative procedure, valid for truncated as well as for non-truncated power-law distributions, based in maximum likelihood estimation, the Kolmogorov-Smirnov goodness-of-fit test, and Monte Carlo simulations. An overview of the main concepts as well as a recipe for their practical implem...

  19. Barley HvHMA1 is a heavy metal pump involved in mobilizing organellar Zn and Cu and plays a role in metal loading into grains.

    Directory of Open Access Journals (Sweden)

    Maria Dalgaard Mikkelsen

    Full Text Available Heavy metal transporters belonging to the P(1B-ATPase subfamily of P-type ATPases are key players in cellular heavy metal homeostasis. Heavy metal transporters belonging to the P(1B-ATPase subfamily of P-type ATPases are key players in cellular heavy metal homeostasis. In this study we investigated the properties of HvHMA1, which is a barley orthologue of Arabidopsis thaliana AtHMA1 localized to the chloroplast envelope. HvHMA1 was localized to the periphery of chloroplast of leaves and in intracellular compartments of grain aleurone cells. HvHMA1 expression was significantly higher in grains compared to leaves. In leaves, HvHMA1 expression was moderately induced by Zn deficiency, but reduced by toxic levels of Zn, Cu and Cd. Isolated barley chloroplasts exported Zn and Cu when supplied with Mg-ATP and this transport was inhibited by the AtHMA1 inhibitor thapsigargin. Down-regulation of HvHMA1 by RNA interference did not have an effect on foliar Zn and Cu contents but resulted in a significant increase in grain Zn and Cu content. Heterologous expression of HvHMA1 in heavy metal-sensitive yeast strains increased their sensitivity to Zn, but also to Cu, Co, Cd, Ca, Mn, and Fe. Based on these results, we suggest that HvHMA1 is a broad-specificity exporter of metals from chloroplasts and serve as a scavenging mechanism for mobilizing plastid Zn and Cu when cells become deficient in these elements. In grains, HvHMA1 might be involved in mobilizing Zn and Cu from the aleurone cells during grain filling and germination.

  20. Effects of KCNQ2 gene truncation on M-type Kv7 potassium currents.

    Directory of Open Access Journals (Sweden)

    Jon Robbins

    Full Text Available The KCNQ2 gene product, Kv7.2, is a subunit of the M-channel, a low-threshold voltage-gated K(+ channel that regulates mammalian and human neuronal excitability. Spontaneous mutations one of the KCNQ2 genes cause disorders of neural excitability such as Benign Familial Neonatal Seizures. However there appear to be no reports in which both human KCNQ2 genes are mutated. We therefore asked what happens to M-channel function when both KCNQ2 genes are disrupted. We addressed this using sympathetic neurons isolated from mice in which the KCNQ2 gene was truncated at a position corresponding to the second transmembrane domain of the Kv7.2 protein. Since homozygote KCNQ2-/- mice die postnatally, experiments were largely restricted to neurons from late embryos. Quantitative PCR revealed an absence of KCNQ2 mRNA in ganglia from KCNQ2-/- embryos but 100-120% increase of KCNQ3 and KCNQ5 mRNAs; KCNQ2+/- ganglia showed ∼30% less KCNQ2 mRNA than wild-type (+/+ ganglia but 40-50% more KCNQ3 and KCNQ5 mRNA. Neurons from KCNQ2-/- embryos showed a complete absence of M-current, even after applying the Kv7 channel enhancer, retigabine. Neurons from heterozygote KCNQ2+/- embryos had ∼60% reduced M-current. In contrast, M-currents in neurons from adult KCNQ2+/- mice were no smaller than those in neurons from wild-type mice. Measurements of tetraethylammonium block did not indicate an increased expression of Kv7.5-containing subunits, implying a compensatory increase in Kv7.2 expression from the remaining KCNQ2 gene. We conclude that mouse embryonic M-channels have an absolute requirement for Kv7.2 subunits for functionality, that the reduced M-channel activity in heterozygote KCNQ2+/- mouse embryos results primarily from a gene-dosage effect, and that there is a compensatory increase in Kv7.2 expression in adult mice.

  1. The Microtremor H/V Spectral Ratio: The Physical Basis of the Diffuse Field Assumption

    Science.gov (United States)

    Sanchez-Sesma, F. J.

    2016-12-01

    The microtremor H/V spectral ratio (MHVSR) is popular to obtain the dominant frequency at a site. Despite the success of MHVSR some controversy arose regarding its physical basis. One approach is the Diffuse Field Assumption, DFA. It is then assumed that noise diffuse features come from multiple scattering within the medium. According to theory, the average of the autocorrelation is proportional to directional energy density (DED) and to the imaginary part of the Green's function for same source and receiver. Then, the square of MHVSR is a ratio of DEDs which, in a horizontally layered system, is 2xImG11/ImG33, where ImG11 and ImG33 are the imaginary parts of Green's functions for horizontal and vertical components. This has physical implications that emerge from the duality DED-force, implicit in the DFA. Consider a surface force at a half-space. The radiated energy is carried away by various wave types and the proportions of each one are precisely the fractions of the energy densities of a diffuse elastic wave field at the free surface. Thus, some properties of applied forces are also characteristics of DEDs. For example, consider a Poisson solid. For a normal point load, 67 per cent of energy is carried away by Rayleigh waves. For the tangential case, it is less well known that, 77 per cent of energy goes as shear waves. In a full space, 92 per cent of the energy is emitted as shear waves. The horizontal DED at the half-space surface implies significant emission of down-going shear waves that explains the curious stair-like resonance spectrum of ImG11. Both ImG11 and ImG33 grow linearly versus frequency and this represents wave emission. For a layered medium, besides wave emission, the ensuing variations correspond to reflected waves. For high frequencies, ImG33 depends on the properties of the top layer. Reflected body waves are very small and Rayleigh waves behave in the top layer as in a kind of mini half-space. From HVSR one can invert the velocity model

  2. Reduction of Artifacts in Images from MR Truncated Data Using Singularity Spectrum Analysis

    Institute of Scientific and Technical Information of China (English)

    骆建华; 庄天戈

    2000-01-01

    In this paper, the theory of signal singularity spectrum analysis (SSA) is proposed. Using SSA theory, a new method is presented to reduce truncation artifacts in magnetic resonance (MR) image due to truncated spectrum data. In the scheme, after detecting signal singularity locations using wavelet analysis in spectrum domain, SSA mathematic model is constructed, where weight coefficients are determined by known truncated spectrum data. Then, the remainder of the truncated spectrum can be obtained using SSA. Experiment and simulation results show that the SSA method will produce fewer artifacts in MR image from truncated spectrum than existing methods.

  3. Characterization of Nonparaxial Truncated Cosine-Gaussian Beams and the Beam Quality in the Far Field

    Institute of Scientific and Technical Information of China (English)

    KANG Xiao-Ping; L(U) Bai-Da

    2006-01-01

    @@ The analytical expression characterizing the propagation of nonparaxial truncated cosine-Gaussian (CoG) beams in free space is derived, and some special cases are discussed. The extended power in the bucket (PIB) is proposed to characterize the beam quality of nonparaxial truncated beams in the far field. It is shown that the extended PIB is applicable to nonparaxial truncated beams, and the PIB of nonparaxial truncated CoG beams depends on the decentred parameter, waist-width-to-wavelength ratio, truncation parameter, and bucket size chosen.

  4. Solution superstructures: truncated cubeoctahedron structures of pyrogallol[4]arene nanoassemblies.

    Science.gov (United States)

    Kumari, Harshita; Kline, Steven R; Fowler, Drew A; Mossine, Andrew V; Deakyne, Carol A; Atwood, Jerry L

    2014-01-04

    Giant nanocapsules: the solution-phase structures of PgC1Ho and PgC3Ho have been investigated using in situ neutron scattering measurements. The SANS results show the presence of spherical nanoassemblies of radius 18.2 Å, which are larger than the previously reported metal-seamed PgC3 hexamers (radius = 10 Å). The spherical architectures conform to a truncated cubeoctahedron geometry, indicating formation of the first metal-containing pyrogallol[4]arene-based dodecameric nanoassemblies in solution.

  5. Generalized beam quality factor of aberrated truncated Gaussian laser beams

    CSIR Research Space (South Africa)

    Mafusire, C

    2011-07-01

    Full Text Available factor of aberrated truncated Gaussian laser beams Cosmas Mafusire1,2 and Andrew Forbes1,2,* 1Council for Scientific and Industrial Research National Laser Centre, P.O. Box 395, Pretoria, South Africa 2School of Physics, University of Kwa... is verified experimentally by implementing aberrations as digital holograms in the laboratory. ? 2011 Optical Society of America OCIS codes: 140.3295, 080.1005, 120.5050. 1. INTRODUCTION The laser beam quality factor (M2) is a useful parameter...

  6. Nonlinear Galerkin Optimal Truncated Low—dimensional Dynamical Systems

    Institute of Scientific and Technical Information of China (English)

    ChuijieWU

    1996-01-01

    In this paper,a new theory of constructing nonlinear Galerkin optimal truncated Low-Dimensional Dynamical Systems(LDDSs) directly from partial differential equations has been developed.Applying the new theory to the nonlinear Burgers' equation,it is shown that a nearly perfect LDDS can be gotten,and the initial-boundary conditions are automatically included in the optimal bases.The nonlinear Galerkin method does not have advantages within the optimization process,but it can significantly improve the results,after the Galerkin optimal bases have been gotten.

  7. Truncated cross-sectional average length of life

    DEFF Research Database (Denmark)

    Canudas-Romo, Vladimir; Guillot, Michel

    2015-01-01

    of developed countries. The truncated cross-sectional average length of life (TCAL) is a new measure that captures historical information about all cohorts present at a given moment and is not limited to countries with complete cohort mortality data. The value of TCAL depends on the rates used to complete...... the cohort series, but differences between TCALs of two populations remain similar irrespective of the data used to complete the cohort series. This result is illustrated by a comparison of TCALs for the US with those for Denmark, Japan, and other high-longevity countries. Specific cohorts that account...

  8. Selective truncations of an optical state using projection synthesis

    CERN Document Server

    Miranowicz, A; Bajer, J; Koashi, M; Imoto, N; Miranowicz, Adam; Ozdemir, Sahin Kaya; Bajer, Jiri; Koashi, Masato; Imoto, Nobuyuki

    2006-01-01

    Selective truncation of Fock-state expansion of an optical field can be achieved using projection synthesis. The process removes predetermined Fock states from the input field by conditional measurement and teleportation. We present a scheme based on multiport interferometry to perform projection synthesis. This scheme can be used both as a generalized quantum scissors device, which filters out Fock states with photon numbers higher than a predetermined value, and also as a quantum punching device, which selectively removes specific Fock states making holes in the Fock-state expansion of the input field.

  9. On the propagation of truncated localized waves in dispersive silica

    KAUST Repository

    Salem, Mohamed

    2010-01-01

    Propagation characteristics of truncated Localized Waves propagating in dispersive silica and free space are numerically analyzed. It is shown that those characteristics are affected by the changes in the relation between the transverse spatial spectral components and the wave vector. Numerical experiments demonstrate that as the non-linearity of this relation gets stronger, the pulses propagating in silica become more immune to decay and distortion whereas the pulses propagating in free-space suffer from early decay and distortion. © 2010 Optical Society of America.

  10. Continuous H/V spectral ratio analysis of ambient noise: a necessity to understand microzonation results obtained by mobile stations

    Science.gov (United States)

    Van Noten, Koen; Lecocq, Thomas

    2016-04-01

    Estimating the resonance frequency (f0) and amplification factor of unconsolidated sediments by H/V spectral ratio (HVSR) analysis of seismic ambient noise has been widely used since Nakamura's proposal in 1989. To measure f0 properly, Nakamura suggested to perform microzonation surveys at night when the artificial microtremor is small and does not fully disrupt the ambient seismic noise. As nightly fieldwork is not always a reasonable demand, we propose an alternative workflow of Nakamura's technique to improve the quality of HVSR results obtained by ambient noise measurements of mobile stations during the day. This new workflow includes the automated H/V calculation of continuous seismic data of a stationary or permanent station installed near the microzonation site for as long as the survey lasts in order to control the error in the HVSR analysis obtained by the mobile stations. In this presentation, we apply this workflow on one year of seismic data at two different case studies; i.e. a rural site with a shallow bedrock depth of 30 m and an urban site (Brussels, capital of Belgium, bedrock depth of 110 m) where human activity is continuous 24h/day. By means of an automated python script, the fundamental peak frequency and the H/V amplitude are automatically picked from H/V spectra that are calculated from 50% overlapping, 30 minute windows during the whole year. Afterwards, the f0 and amplitude picks are averaged per hour/per day for the whole year. In both case studies, the H/V amplitude and the fundamental frequencies range considerable, up to ˜15% difference between the daily and nightly measurements. As bedrock depth is known from boreholes at both sites, we concluded that the nightly picked f0 is the true one. Our results thus suggest that changes in the determined f0 and H/V amplitude are dominantly caused by the human behaviour which is stored in the ambient seismic noise (e.g. later onset of traffic in a weekend, quiet Sundays, differences between

  11. Identification of a 49-bp fragment of the HvLTP2 promoter directing aleurone cell specific expression.

    Science.gov (United States)

    Opsahl-Sorteberg, Hilde-Gunn; Divon, Hege Hvattum; Nielsen, Peter Stein; Kalla, Roger; Hammond-Kosack, Michael; Shimamoto, Ko; Kohli, Ajay

    2004-10-27

    Identification of regulatory elements directing definite and specific spatiotemporal expression patterns is a prerequisite to the next generation of transgenic plants with commercial and ethical feasibility for producing plantibodies or other pharmaceutically important compounds. Here we describe the functional dissection of the barley nonspecific lipid transfer protein gene promoter, HvLTP2. The gene is specifically expressed in aleurone cells of cereals and used as an aleurone marker in maize and rice. The transcript is uniformly localised in the barley aleurone cells from around 10 DAP. Patchy expression in aleurone cells of transgenic rice has been reported and explained by silencing of transgenes. We have performed deletion analyses of the 801-bp HvLTP2 promoter to gain insight into the molecular basis of its regulation and the presence of putative regulatory elements. From the deletion studies, a 49-bp promoter region directing aleurone-specific expression was identified. Simultaneously, in vivo footprinting was carried out to identify promoter elements bound by putative regulatory proteins. Within the 49-bp fragment, the most promising candidate for a minimal cis-acting regulatory region directing aleurone specificity is the ds-sequence. Based on our results, we hypothesise that the ds-sequence directs aleurone specificity, possibly through a concerted action with elements directing general expression in the seed. Moreover, we present an overview of LTP2 elements putatively involved in directing seed, endosperm, and aleurone expression. Additionally, we report HvLTP2 expression in the embryo, not previously detected. The regulatory element(s) directing expression in embryo is located downstream of the 49-bp fragment directing aleurone specificity, thus demonstrating independent control of aleurone and embryo-localised expression. Finally, we discuss the existence of several endosperm-specific boxes and whether alternative promoter elements and combinations

  12. Projection-free approximate balanced truncation of large unstable systems

    Science.gov (United States)

    Flinois, Thibault L. B.; Morgans, Aimee S.; Schmid, Peter J.

    2015-08-01

    In this article, we show that the projection-free, snapshot-based, balanced truncation method can be applied directly to unstable systems. We prove that even for unstable systems, the unmodified balanced proper orthogonal decomposition algorithm theoretically yields a converged transformation that balances the Gramians (including the unstable subspace). We then apply the method to a spatially developing unstable system and show that it results in reduced-order models of similar quality to the ones obtained with existing methods. Due to the unbounded growth of unstable modes, a practical restriction on the final impulse response simulation time appears, which can be adjusted depending on the desired order of the reduced-order model. Recommendations are given to further reduce the cost of the method if the system is large and to improve the performance of the method if it does not yield acceptable results in its unmodified form. Finally, the method is applied to the linearized flow around a cylinder at Re = 100 to show that it actually is able to accurately reproduce impulse responses for more realistic unstable large-scale systems in practice. The well-established approximate balanced truncation numerical framework therefore can be safely applied to unstable systems without any modifications. Additionally, balanced reduced-order models can readily be obtained even for large systems, where the computational cost of existing methods is prohibitive.

  13. A Conformal Truncation Framework for Infinite-Volume Dynamics

    CERN Document Server

    Katz, Emanuel; Walters, Matthew T

    2016-01-01

    We present a new framework for studying conformal field theories deformed by one or more relevant operators. The original CFT is described in infinite volume using a basis of states with definite momentum, $P$, and conformal Casimir, $\\mathcal{C}$. The relevant deformation is then considered using lightcone quantization, with the resulting Hamiltonian expressed in terms of this CFT basis. Truncating to states with $\\mathcal{C} \\leq \\mathcal{C}_{\\max}$, one can numerically find the resulting spectrum, as well as other dynamical quantities, such as spectral densities of operators. This method requires the introduction of an appropriate regulator, which can be chosen to preserve the conformal structure of the basis. We check this framework in three dimensions for various perturbative deformations of a free scalar CFT, and for the case of a free $O(N)$ CFT deformed by a mass term and a non-perturbative quartic interaction at large-$N$. In all cases, the truncation scheme correctly reproduces known analytic result...

  14. A strongly truncated inner accretion disc in the Rapid Burster

    Science.gov (United States)

    van den Eijnden, J.; Bagnoli, T.; Degenaar, N.; Lohfink, A. M.; Parker, M. L.; in ‘t Zand, J. J. M.; Fabian, A. C.

    2017-03-01

    The neutron star (NS) low-mass X-ray binary (LMXB) the Rapid Burster (RB; MXB 1730-335) uniquely shows both Type I and Type II X-ray bursts. The origin of the latter is ill-understood but has been linked to magnetospheric gating of the accretion flow. We present a spectral analysis of simultaneous Swift, NuSTAR and XMM-Newton observations of the RB during its 2015 outburst. Although a broad Fe K line has been observed before, the high quality of our observations allows us to model this line using relativistic reflection models for the first time. We find that the disc is strongly truncated at 41.8^{+6.7}_{-5.3} gravitational radii (∼87 km), which supports magnetospheric Type II burst models and strongly disfavours models involving instabilities at the innermost stable circular orbit. Assuming that the RB magnetic field indeed truncates the disc, we find B = (6.2 ± 1.5) × 108 G, larger than typically inferred for NS LMXBs. In addition, we find a low inclination (i = 29° ± 2°). Finally, we comment on the origin of the Comptonized and thermal components in the RB spectrum.

  15. Hamiltonian truncation approach to quenches in the Ising field theory

    Directory of Open Access Journals (Sweden)

    T. Rakovszky

    2016-10-01

    Full Text Available In contrast to lattice systems where powerful numerical techniques such as matrix product state based methods are available to study the non-equilibrium dynamics, the non-equilibrium behaviour of continuum systems is much harder to simulate. We demonstrate here that Hamiltonian truncation methods can be efficiently applied to this problem, by studying the quantum quench dynamics of the 1+1 dimensional Ising field theory using a truncated free fermionic space approach. After benchmarking the method with integrable quenches corresponding to changing the mass in a free Majorana fermion field theory, we study the effect of an integrability breaking perturbation by the longitudinal magnetic field. In both the ferromagnetic and paramagnetic phases of the model we find persistent oscillations with frequencies set by the low-lying particle excitations not only for small, but even for moderate size quenches. In the ferromagnetic phase these particles are the various non-perturbative confined bound states of the domain wall excitations, while in the paramagnetic phase the single magnon excitation governs the dynamics, allowing us to capture the time evolution of the magnetisation using a combination of known results from perturbation theory and form factor based methods. We point out that the dominance of low lying excitations allows for the numerical or experimental determination of the mass spectra through the study of the quench dynamics.

  16. Macroscopic model and truncation error of discrete Boltzmann method

    Science.gov (United States)

    Hwang, Yao-Hsin

    2016-10-01

    A derivation procedure to secure the macroscopically equivalent equation and its truncation error for discrete Boltzmann method is proffered in this paper. Essential presumptions of two time scales and a small parameter in the Chapman-Enskog expansion are disposed of in the present formulation. Equilibrium particle distribution function instead of its original non-equilibrium form is chosen as key variable in the derivation route. Taylor series expansion encompassing fundamental algebraic manipulations is adequate to realize the macroscopically differential counterpart. A self-contained and comprehensive practice for the linear one-dimensional convection-diffusion equation is illustrated in details. Numerical validations on the incurred truncation error in one- and two-dimensional cases with various distribution functions are conducted to verify present formulation. As shown in the computational results, excellent agreement between numerical result and theoretical prediction are found in the test problems. Straightforward extensions to more complicated systems including convection-diffusion-reaction, multi-relaxation times in collision operator as well as multi-dimensional Navier-Stokes equations are also exposed in the Appendix to point out its expediency in solving complicated flow problems.

  17. A strongly truncated inner accretion disk in the Rapid Burster

    CERN Document Server

    Eijnden, J van den; Degenaar, N; Lohfink, A M; Parker, M L; Zand, J J M in 't; Fabian, A C

    2016-01-01

    The neutron star (NS) low-mass X-ray binary (LMXB) the Rapid Burster (RB; MXB 1730-335) uniquely shows both Type-I and Type-II X-ray bursts. The origin of the latter is ill-understood but has been linked to magnetospheric gating of the accretion flow. We present a spectral analysis of simultaneous Swift, NuSTAR and XMM-Newton observations of the RB during its 2015 outburst. Although a broad Fe-K line has been observed before, the high quality of our observations allows us to model this line using relativistic reflection models for the first time. We find that the disk is strongly truncated at $41.8^{+6.7}_{-5.3}$ gravitational radii ($\\sim 87$ km), which supports magnetospheric Type-II burst models and strongly disfavors models involving instabilities at the innermost stable circular orbit. Assuming that the RB magnetic field indeed truncates the disk, we find $B = (6.2 \\pm 1.5) \\times 10^8$ G, larger than typically inferred for NS LMXBs. In addition, we find a low inclination ($i = 29\\pm2^{\\rm o}$). Finally,...

  18. Hamiltonian truncation approach to quenches in the Ising field theory

    Science.gov (United States)

    Rakovszky, T.; Mestyán, M.; Collura, M.; Kormos, M.; Takács, G.

    2016-10-01

    In contrast to lattice systems where powerful numerical techniques such as matrix product state based methods are available to study the non-equilibrium dynamics, the non-equilibrium behaviour of continuum systems is much harder to simulate. We demonstrate here that Hamiltonian truncation methods can be efficiently applied to this problem, by studying the quantum quench dynamics of the 1 + 1 dimensional Ising field theory using a truncated free fermionic space approach. After benchmarking the method with integrable quenches corresponding to changing the mass in a free Majorana fermion field theory, we study the effect of an integrability breaking perturbation by the longitudinal magnetic field. In both the ferromagnetic and paramagnetic phases of the model we find persistent oscillations with frequencies set by the low-lying particle excitations not only for small, but even for moderate size quenches. In the ferromagnetic phase these particles are the various non-perturbative confined bound states of the domain wall excitations, while in the paramagnetic phase the single magnon excitation governs the dynamics, allowing us to capture the time evolution of the magnetisation using a combination of known results from perturbation theory and form factor based methods. We point out that the dominance of low lying excitations allows for the numerical or experimental determination of the mass spectra through the study of the quench dynamics.

  19. Firewalls as artefacts of inconsistent truncations of quantum geometries

    Energy Technology Data Exchange (ETDEWEB)

    Germani, Cristiano [Max-Planck-Institut fuer Physik, Muenchen (Germany); Arnold Sommerfeld Center, Ludwig-Maximilians-University, Muenchen (Germany); Institut de Ciencies del Cosmos, Universitat de Barcelona (Spain); Sarkar, Debajyoti [Max-Planck-Institut fuer Physik, Muenchen (Germany); Arnold Sommerfeld Center, Ludwig-Maximilians-University, Muenchen (Germany)

    2016-01-15

    In this paper we argue that a firewall is simply a manifestation of an inconsistent truncation of non-perturbative effects that unitarize the semiclassical black hole. Namely, we show that a naive truncation of quantum corrections to the Hawking spectrum at order O(e{sup -S}), inexorably leads to a ''localised'' divergent energy density near the black hole horizon. Nevertheless, in the same approximation, a distant observer only sees a discretised spectrum and concludes that unitarity is achieved by (e{sup -S}) effects. This is due to the fact that instead, the correct quantum corrections to the Hawking spectrum go like (g{sup tt}e{sup -S}). Therefore, while at a distance far away from the horizon, where g{sup tt} ∼ 1, quantum corrections are perturbative, they do diverge close to the horizon, where g{sup tt} → ∞. Nevertheless, these ''corrections'' nicely re-sum so that correlations functions are smooth at the would-be black hole horizon. Thus, we conclude that the appearance of firewalls is just a signal of the breaking of the semiclassical approximation at the Page time, even for large black holes. (copyright 2015 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim)

  20. Generalizing Tanisaki's ideal via ideals of truncated symmetric functions

    CERN Document Server

    Mbirika, Aba

    2010-01-01

    We define a family of ideals I_h in the polynomial ring Z[x_1,x_2,...,x_n] that are parametrized by Hessenberg functions h (equivalently Dyck paths or ample partitions). The ideals I_h generalize algebraically a family of ideals called the Tanisaki ideal, which is used in a geometric construction of permutation representations called Springer theory. To define I_h, we use polynomials in a subset of the variables {x_1,...,x_n} that are symmetric under the corresponding permutation subgroup. We call these polynomials truncated symmetric functions and show combinatorial identities relating different kinds of truncated symmetric polynomials. We then prove several key properties of I_h, including that if h > h' in the natural partial order on Dyck paths then I_h \\subset I_{h'}, and explicitly construct a Grobner basis for I_h. We define a second family of ideals J_h for which some of the claims are easier to see, and then prove that I_h = J_h. Using earlier work of the first author, the current manuscript proves t...

  1. Partial Supergravity Breaking and the Effective Action of Consistent Truncations

    CERN Document Server

    Grimm, Thomas W; Lust, Severin

    2014-01-01

    We study vacua of N = 4 half-maximal gauged supergravity in five dimensions and determine crucial properties of the effective theory around the vacuum. The main focus is on configurations with exactly two broken supersymmetries, since they frequently appear in consistent truncations of string theory and supergravity. Evaluating one-loop corrections to the Chern-Simons terms we find necessary conditions to ensure that a consistent truncation also gives rise to a proper effective action of an underlying more fundamental theory. To obtain concrete examples, we determine the N=4 action of M-theory on six-dimensional SU(2)-structure manifolds with background fluxes. Calabi-Yau threefolds with vanishing Euler number are examples of SU(2)-structure manifolds that yield N=2 Minkowski vacua. We find that that one-loop corrections to the Chern-Simons terms vanish trivially and thus do not impose constraints on identifying effective theories. This result is traced back to the absence of isometries on these geometries. E...

  2. Cloning and characterization of a novel barley gene,HvORG4,induced by Fusarium graminearum infection

    Institute of Scientific and Technical Information of China (English)

    Theo; Van-Der; Lee

    2007-01-01

    Barley Fusarium head blight(FHB),caused by species of the Fusarium fungus,is a devastating disease that is reemerging worldwide in recent years.In this study,a novel gene,HvORG4,was cloned from barley by using cDNA library and suppression subtractive hybridization(SSH) library strategies.The SSH library and cDNA library were constructed from the Chinese barley cultivar Jing02-461(resistance to FHB) infected by Fusarium graminearum isolate Huanggang-1.For the SSH analysis,more than 120 differentially express...

  3. Bovine herpes virus-1 (BoHV-1) detection in dairy cattle with reproductive problems in Sudan

    OpenAIRE

    Amira Mohamed Elhassan; Mohamed Abdalla Fadol; Mohamed Ahmed Mohamed Salih; Abdel Rahim Mohamed El Hussein

    2015-01-01

    The present work aimed to observe the infection pattern of Bovine herpes virus-1 (BoHV-1) in dairy cattle with reproductive problems in Sudan. A total of 140 samples comprising of vaginal swab (n=97), placenta (n=15), whole blood (n=19), uterine fluid (n=1), and serum (n=8) were collected from 16 dairy herds showing particularly high rate of abortion and infertility in Khartoum State. The samples were used for virus isolation, and were tested by Enzyme-Linked Immunosorbent Assay (ELISA) and p...

  4. Induction of Barley Silicon Transporter HvLsi1 and HvLsi2, increased silicon concentration in the shoot and regulated Starch and ABA Homeostasis under Osmotic stress and Concomitant Potassium Deficiency

    Directory of Open Access Journals (Sweden)

    Seyed A. Hosseini

    2017-08-01

    Full Text Available Drought is one of the major stress factors reducing cereal production worldwide. There is ample evidence that the mineral nutrient status of plants plays a critical role in increasing plant tolerance to different biotic and abiotic stresses. In this regard, the important role of various nutrients e.g., potassium (K or silicon (Si in the mitigation of different stress factors, such as drought, heat or frost has been well documented. Si application has been reported to ameliorate plant nutrient deficiency. Here, we used K and Si either solely or in combination to investigate whether an additive positive effect on barley growth can be achieved under osmotic stress and which mechanisms contribute to a better tolerance to osmotic stress. To achieve this goal, barley plants were subjected to polyethylene glycol (PEG-induced osmotic stress under low or high K supply and two Si regimes. The results showed that barley silicon transporters HvLsi1 and HvLsi2 regulate the accumulation of Si in the shoot only when plant suffered from K deficiency. Si, in turn, increased the starch level under both osmotic stress and K deficiency and modulated the glycolytic and TCA pathways. Hormone profiling revealed that the beneficial effect of Si is most likely mediated also by ABA homeostasis and active cytokinin isopentenyl adenine (iP. We conclude that Si may effectively improve stress tolerance under K deficient condition in particular when additional stress like osmotic stress interferes.

  5. Assessment of the Group 3-4 (HV-S1, HV-S2, IHLW-S1) Stack Sampling Probe Locations for Compliance with ANSI/HPS N13.1-1999

    Energy Technology Data Exchange (ETDEWEB)

    Glissmeyer, John A.; Flaherty, Julia E.; Antonio, Ernest J.

    2013-01-01

    This document reports on a series of tests conducted to assess the proposed air sampling locations for the Hanford Tank Waste Treatment and Immobilization Plant (WTP) Group 3-4 exhaust stacks with respect to the applicable criteria regarding the placement of an air sampling probe. The HV-S1, HV-S2, and IHLW-S1 exhaust stacks were tested together as a group (Test Group 3-4) because they share a geometric attribute: the common factor in their design is that the last significant flow disturbance upstream of the air sampling probe is a jog (i.e., two conjoined bends of equal and opposite curvature resulting in a change in elevation of the duct). Federal regulations require that a sampling probe be located in the exhaust stack according to criteria established by the American National Standards Institute/Health Physics Society (ANSI/HPS) N13.1-1999, Sampling and Monitoring Releases of Airborne Radioactive Substances from the Stack and Ducts of Nuclear Facilities. These criteria address the capability of the sampling probe to extract a sample that represents the effluent stream.

  6. Diquark bound states at far beyond ladder truncation

    CERN Document Server

    Jinno, Ryusuke; Mishima, Go

    2015-01-01

    The Bethe-Salpeter equation in the diquark channel is investigated by employing the Dyson-Schwinger method together with the Munczek-Nemirovsky model. The novelty of our study is a resummation of completely-crossed ladder diagrams in the Bethe-Salpeter kernel. These diagrams are enhanced due to their color factors in the diquark channel, but not in the meson channel. As a result of our analysis, it is suggested that diquark bound-state solutions exist in the Bethe-Salpeter equation, which have been thought to be absent.

  7. Comparison between two methods for forward calculation of ambient noise H/V spectral ratios

    Science.gov (United States)

    Garcia-Jerez, A.; Luzón, F.; Sanchez-Sesma, F. J.; Santoyo, M. A.; Albarello, D.; Lunedei, E.; Campillo, M.; Iturrarán-Viveros, U.

    2011-12-01

    The analysis of horizontal-to-vertical spectral ratios of ambient noise (NHVSR) is a valuable tool for seismic prospecting, particularly if both a dense spatial sampling and a low-cost procedure are required. Unfortunately, the computation method still lacks of a unanimously accepted theoretical basis and different approaches are currently being used for inversion of the ground structure from the measured H/V curves. Two major approaches for forward calculation of NHVSRs in a layered medium are compared in this work. The first one was developed by Arai and Tokimatsu (2004) and recently improved by Albarello and Lunedei (2011). It consists of a description of the wavefield as generated by Far Surface point Forces (FSF method). The second one is based on the work of Sánchez-Sesma et al. (2011) who consider ambient noise as a Diffuse WaveField (DWF method), taking advantage of the proportionality between its Fourier-transformed autocorrelation (power spectrum) and the imaginary part of the Green function when source and receiver are the same. In both methods, the NHVSR is written as (PH/PV)1/2, where PH and PV are the horizontal and vertical power spectra. In the FSF method these quantities are given by PV∝⊙m(1+1/2χm2α2)(ARm/kRm)2 PH∝⊙m{(1+1/2χm2α2)(ARm/kRm)2χm2+1/2α2(ALm/kLm)2} where kRm, χm and ARm are wavenumber, ellipticity and medium response of the m-th Rayleigh wave mode; kLm and ALm correspond to the m-th Love wave mode and α is the horizontal-to-vertical load ratio of the ambient noise sources. Some common factors are omitted in the expressions of PV and PH. On the other hand, the DWF method deals with the full wavefield including both surface and body waves. In order to make the comparison easier, and taking into account that surface waves are often the dominant components in wide spectral ranges, body wave contributions are neglected here. In this case, the PH and PV power spectra for the DWF method are reduced to the simple expressions: PV

  8. Molecular Characterization of the First Bovine Herpesvirus 4 (BoHV-4) Strains Isolated from In Vitro Bovine Embryos production in Argentina

    Science.gov (United States)

    González Altamiranda, Erika; Manrique, Julieta M.; Pérez, Sandra E.; Ríos, Glenda L.; Odeón, Anselmo C.; Leunda, María R.; Jones, Leandro R.; Verna, Andrea

    2015-01-01

    Bovine herpesvirus 4 (BoHV-4) is increasingly considered as responsible for various problems of the reproductive tract. The virus infects mainly blood mononuclear cells and displays specific tropism for vascular endothelia, reproductive and fetal tissues. Epidemiological studies suggest its impact on reproductive performance, and its presence in various sites in the reproductive tract highlights its potential transmission in transfer-stage embryos. This work describes the biological and genetic characterization of BoHV-4 strains isolated from an in vitro bovine embryo production system. BoHV-4 strains were isolated in 2011 and 2013 from granulosa cells and bovine oocytes from ovary batches collected at a local abattoir, used as “starting material” for in vitro production of bovine embryos. Compatible BoHV-4-CPE was observed in the co-culture of granulosa cells and oocytes with MDBK cells. The identity of the isolates was confirmed by PCR assays targeting three ORFs of the viral genome. The phylogenetic analyses of the strains suggest that they were evolutionary unlinked. Therefore it is possible that BoHV-4 ovary infections occurred regularly along the evolution of the virus, at least in Argentina, which can have implications in the systems of in vitro embryo production. Thus, although BoHV-4 does not appear to be a frequent risk factor for in vitro embryo production, data are still limited. This study reveals the potential of BoHV-4 transmission via embryo transfer. Moreover, the high variability among the BoHV-4 strains isolated from aborted cows in Argentina highlights the importance of further research on the role of this virus as an agent with the potential to cause reproductive disease in cattle. The genetic characterization of the isolated strains provides data to better understand the pathogenesis of BoHV-4 infections. Furthermore, it will lead to fundamental insights into the molecular aspects of the virus and the means by which these strains circulate

  9. Paleogene continental margin truncation in southwestern Mexico: Geochronological evidence

    Science.gov (United States)

    Schaaf, Peter; MoráN-Zenteno, Dante; HernáNdez-Bernal, Maria Del Sol; SolíS-Pichardo, Gabriela; Tolson, Gustavo; KöHler, Hermann

    1995-12-01

    The reasons for, and mechanisms of, continental margin truncation in SW Mexico where Mesozoic-Cenozoic plutons are situated directly on the Pacific coast, are not yet well understood. Large-scale dextral and/or sinistral displacements of the continental margin terranes, now forming parts of Baja California or the Chortis block, have been proposed. The well-defined along-coast NW-SE decreasing granitoid intrusion age trend (˜1.2 cm/yr in the 100 Ma-40 Ma time interval) between Puerto Vallarta and Zihuatanejo is interpreted by us to be a geometric artifact of oblique continental margin truncation rather than the consequence of a sinistral offset of the Chortis block from those latitudes toward the SE. Changes in the dip and velocity of the NNW-SSE trending Cretaceous-Tertiary subduction zone resulted in a landward migration of the magmatic arc. Taking into account certain stratigraphic affinities of Chortis and the Oaxaca and Mixteca terranes, together with the known displacement rates along the North America-Caribbean Plate boundary, the northwesternmost paleoposition of the Chortis block with respect to SW Mexico was near Zihuatanejo. In contrast, between Zihuatanejo and the Isthmus of Tehuantepec, the cessation of the Tertiary magmatism decreased more rapidly (˜7.7 cm/yr), although the trend is not so obvious. Starting in the late Eocene, Chortis moved about 1100 km to the SE along a transform boundary associated with the opening of the Cayman Trough. Based on our geochronological data and structural relationships between mylonite zones and plutons in the Acapulco-Tehuantepec area, we propose an approximately 650 km SE movement of Chortis from about 40-25 Ma, with a velocity of 6.5-4.3 cm/yr. Since this is considerably slower than the decreasing age trend obtained by us using the geochronological data, we consider batholith formation in this segment to predate and postdate the offshore passage of the North America-Farallon-Caribbean triple junction. Geological

  10. HvPap-1 C1A Protease Participates Differentially in the Barley Response to a Pathogen and an Herbivore

    Directory of Open Access Journals (Sweden)

    Mercedes Diaz-Mendoza

    2017-09-01

    Full Text Available Co-evolutionary processes in plant–pathogen/herbivore systems indicate that protease inhibitors have a particular value in biotic interactions. However, little is known about the defensive role of their targets, the plant proteases. C1A cysteine proteases are the most abundant enzymes responsible for the proteolytic activity during different processes like germination, development and senescence in plants. To identify and characterize C1A cysteine proteases of barley with a potential role in defense, mRNA and protein expression patterns were analyzed in response to biotics stresses. A barley cysteine protease, HvPap-1, previously related to abiotic stresses and grain germination, was particularly induced by flagellin or chitosan elicitation, and biotic stresses such as the phytopathogenic fungus Magnaporthe oryzae or the phytophagous mite Tetranychus urticae. To elucidate the in vivo participation of this enzyme in defense, transformed barley plants overexpressing or silencing HvPap-1 encoding gene were subjected to M. oryzae infection or T. urticae infestation. Whereas overexpressing plants were less susceptible to the fungus than silencing plants, the opposite behavior occurred to the mite. This unexpected result highlights the complexity of the regulatory events leading to the response to a particular biotic stress.

  11. Presence of anti-BoHV-1 antibodies in caprine herds from Sao Paulo and Minas Gerais, Brazil

    Directory of Open Access Journals (Sweden)

    Fabio Carvalho Dias

    2013-06-01

    Full Text Available This research evaluated the presence of antibodies against the bovine herpesvirus type 1 (BoHV-1 in serum samples from caprines. This way, one analyzed 337 samples from 5 properties, 2 of them located at the state of Minas Gerais and the other 3 at the state of Sao Paulo. The samples underwent the virusneutralization test using the Nebraska viral strain, in order to verify the presence of antibodies against BoHV-1. Despite the geometric mean of antibody titers was 3, the occurrence of reactivity in animals achieved 62% (209/337, being positive 57.2% (151/264 of samples from the properties at the state of Minas Gerais and 79.5% (58/73 of samples from the state of Sao Paulo. Due to the fact that caprines don’t constitute a target species of this virus, the high occurrence of anti-BOHV-1 antibodies awakens an epidemiological alert on consortium herds, a fact driving the need for further studies to show the importance of infection in this animal species.

  12. Bovine herpes virus-1 (BoHV-1 detection in dairy cattle with reproductive problems in Sudan

    Directory of Open Access Journals (Sweden)

    Amira Mohamed Elhassan

    2015-06-01

    Full Text Available The present work aimed to observe the infection pattern of Bovine herpes virus-1 (BoHV-1 in dairy cattle with reproductive problems in Sudan. A total of 140 samples comprising of vaginal swab (n=97, placenta (n=15, whole blood (n=19, uterine fluid (n=1, and serum (n=8 were collected from 16 dairy herds showing particularly high rate of abortion and infertility in Khartoum State. The samples were used for virus isolation, and were tested by Enzyme-Linked Immunosorbent Assay (ELISA and polymerase chain reaction (PCR. No virus could be isolated from the samples inoculated for isolation in cell culture. Out of 80 specimens tested by ELISA, 7 (8.75% were found to be positive, and one sample was doubtful. Using PCR, 11 (10.7% out of 103 samples were found to be positive. When comparing between two methods for DNA extraction, the DNA extracted by commercial kit was found to be better in quality as compared to the DNA extracted using phenol/chloroform/isoamyl-alcohol method. The study confirmed the presence of BoHV-1 in cattle farms with reproductive problems in Sudan.

  13. An Inactivated Vaccine from a Field Strain of Bovine Herpesvirus-1 (BoHV-1) has High Antigenic Mass and Induces Strong Efficacy in a Rabbit Model

    Institute of Scientific and Technical Information of China (English)

    Julian Ruiz-Sáenz; Jairo Jaime; Victor Vera

    2013-01-01

    Bovine Herpesvirus-1 (BoHV-1) is a DNA virus belonging to the family Herpesviridae,subfamily Alfaherpesvirinae;it is a worldwide pathogen,causing serious economic losses in livestock.In Colombia there have been multiple isolates of BoHV-1 that have been subjected to molecular characterization,classifying most of the country isolates as BoHV-1.1.In the present study we developed and evaluated an ethyleneimine binary inactivated isolate from the native BoHV-1 strain (Córdoba-2) in a rabbit model of vaccination and infection.The vaccine was evaluated in two phases,one of immunogenicity with vaccination and a booster after 21 days,and an evaluation phase of protection against challenge with a highly virulent reference strain.The results demonstrate optimum serum-conversion,with protective neutralizing antibody titers 28 days post vaccination and optimal protection against challenge with the reference strain with decreased clinical signs of infection,protection against the onset of fever and decrease of virus excretion post challenge.In conclusion,our results show the enormous potential that an immunogenic inactivated vaccine has produced from the native BoHV-1.1 strain,which produces a high antigen mass to the vaccine to induce optimal immunity and protection,and it is a strong candidate for evaluation and possible future use in different cattle populations.

  14. Administering truncated receive functions in a parallel messaging interface

    Science.gov (United States)

    Archer, Charles J; Blocksome, Michael A; Ratterman, Joseph D; Smith, Brian E

    2014-12-09

    Administering truncated receive functions in a parallel messaging interface (`PMI`) of a parallel computer comprising a plurality of compute nodes coupled for data communications through the PMI and through a data communications network, including: sending, through the PMI on a source compute node, a quantity of data from the source compute node to a destination compute node; specifying, by an application on the destination compute node, a portion of the quantity of data to be received by the application on the destination compute node and a portion of the quantity of data to be discarded; receiving, by the PMI on the destination compute node, all of the quantity of data; providing, by the PMI on the destination compute node to the application on the destination compute node, only the portion of the quantity of data to be received by the application; and discarding, by the PMI on the destination compute node, the portion of the quantity of data to be discarded.

  15. Learning Mixtures of Truncated Basis Functions from Data

    DEFF Research Database (Denmark)

    Langseth, Helge; Nielsen, Thomas Dyhre; Pérez-Bernabé, Inmaculada;

    2014-01-01

    -likelihood), they are significantly faster, and therefore indicate that the MoTBF framework can be used for inference and learning in reasonably sized domains. Furthermore, we show how a particular sub- class of MoTBF potentials (learnable by the proposed methods) can be exploited to significantly reduce complexity during inference.......In this paper we investigate methods for learning hybrid Bayesian networks from data. First we utilize a kernel density estimate of the data in order to translate the data into a mixture of truncated basis functions (MoTBF) representation using a convex optimization technique. When utilizing...... propose an alternative learning method that relies on the cumulative distribution function of the data. Empirical results demonstrate the usefulness of the approaches: Even though the methods produce estimators that are slightly poorer than the state of the art (in terms of log...

  16. Theoretical analysis of balanced truncation for linear switched systems

    DEFF Research Database (Denmark)

    Petreczky, Mihaly; Wisniewski, Rafal; Leth, John-Josef

    2012-01-01

    In this paper we present theoretical analysis of model reduction of linear switched systems based on balanced truncation, presented in [1,2]. More precisely, (1) we provide a bound on the estimation error using L2 gain, (2) we provide a system theoretic interpretation of grammians...... for showing this independence is realization theory of linear switched systems. [1] H. R. Shaker and R. Wisniewski, "Generalized gramian framework for model/controller order reduction of switched systems", International Journal of Systems Science, Vol. 42, Issue 8, 2011, 1277-1291. [2] H. R. Shaker and R....... Wisniewski, "Switched Systems Reduction Framework Based on Convex Combination of Generalized Gramians", Journal of Control Science and Engineering, 2009....

  17. Truncation identities for the small polaron fusion hierarchy

    CERN Document Server

    Grabinski, André M

    2012-01-01

    We study a one-dimensional lattice model of interacting spinless fermions. This model is integrable for both periodic and open boundary conditions, the latter case includes the presence of Grassmann valued non-diagonal boundary fields breaking the bulk U(1) symmetry of the model. Starting from the embedding of this model into a graded Yang-Baxter algebra an infinite hierarchy of comuting transfer matrices is constructed by means of a fusion procedure. For certain values of the coupling constant related to anisotropies of the underlying vertex model taken at roots of unity this hierarchy is shown to truncate giving a finite set of functional equations for the spectrum of the transfer matrices. For generic coupling constants the spectral problem is formulated in terms of a TQ-equation which can be solved by Bethe ansatz methods for periodic and diagonal open boundary conditions. Possible approaches for the solution of the model with generic non-diagonal boundary fields are discussed.

  18. Enhanced absorption in heterostructures with graphene and truncated photonic crystals

    CERN Document Server

    Liu, Yiping; Dai, Yunyun; Xia, Yuyu; Du, Guiqiang; Lu, Guang; Liu, Fen; Shi, Lei; Zi, Jian

    2016-01-01

    We theoretically and experimentally investigate the optical absorption properties of heterostructures composed of graphene films and truncated photonic crystals (PCs) in the visible range. The experimental results show that the absorption of the heterostructure is enhanced greatly in the whole forbidden gap of PCs compared with that of graphene alone. The absorption is enhanced over a wide angle of incidence for both transverse electric (TE) and transverse magnetic (TM) polarizations. The enhanced absorption band broadens for TE polarization but narrows for TM polarization as the incident angle increases. In the forbidden gap of the PCs, the maximum absorptance of the heterostructures is nearly four times of that of bare graphene films for arbitrary incident angles and polarizations. The optical experiments are in excellent agreement with the theoretical results.

  19. An Asymmetric Image Encryption Based on Phase Truncated Hybrid Transform

    Science.gov (United States)

    Khurana, Mehak; Singh, Hukum

    2017-09-01

    To enhance the security of the system and to protect it from the attacker, this paper proposes a new asymmetric cryptosystem based on hybrid approach of Phase Truncated Fourier and Discrete Cosine Transform (PTFDCT) which adds non linearity by including cube and cube root operation in the encryption and decryption path respectively. In this cryptosystem random phase masks are used as encryption keys and phase masks generated after the cube operation in encryption process are reserved as decryption keys and cube root operation is required to decrypt image in decryption process. The cube and cube root operation introduced in the encryption and decryption path makes system resistant against standard attacks. The robustness of the proposed cryptosystem has been analysed and verified on the basis of various parameters by simulating on MATLAB 7.9.0 (R2008a). The experimental results are provided to highlight the effectiveness and suitability of the proposed cryptosystem and prove the system is secure.

  20. Truncated $\\gamma$-exponential models for tidal stellar systems

    CERN Document Server

    Gomez-Leyton, Y J

    2016-01-01

    We introduce a parametric family of models to characterize the properties of astrophysical systems in a quasi-stationary evolution under the incidence evaporation. We start from an one-particle distribution $f_{\\gamma}\\left(\\mathbf{q},\\mathbf{p}|\\beta,\\varepsilon_{s}\\right)$ that considers an appropriate deformation of Maxwell-Boltzmann form with inverse temperature $\\beta$, in particular, a power-law truncation at the scape energy $\\varepsilon_{s}$ with exponent $\\gamma>0$. This deformation is implemented using a generalized $\\gamma$-exponential function obtained from the \\emph{fractional integration} of ordinary exponential. As shown in this work, this proposal generalizes models of tidal stellar systems that predict particles distributions with \\emph{isothermal cores and polytropic haloes}, e.g.: Michie-King models. We perform the analysis of thermodynamic features of these models and their associated distribution profiles. A nontrivial consequence of this study is that profiles with isothermal cores and p...

  1. Simulating strongly correlated multiparticle systems in a truncated Hilbert space

    Energy Technology Data Exchange (ETDEWEB)

    Ernst, Thomas; Hallwood, David W.; Gulliksen, Jake; Brand, Joachim [New Zealand Institute for Advanced Study and Centre for Theoretical Chemistry and Physics, Massey University, Private Bag 102904, North Shore, Auckland 0745 (New Zealand); Meyer, Hans-Dieter [Theoretische Chemie, Physikalisch-Chemisches Institut, Universitaet Heidelberg, Im Neuenheimer Feld 229, D-69120 Heidelberg (Germany)

    2011-08-15

    Representing a strongly interacting multiparticle wave function in a finite product basis leads to errors. Simple rescaling of the contact interaction can preserve the low-lying energy spectrum and long-wavelength structure of wave functions in one-dimensional systems and thus correct for the basis set truncation error. The analytic form of the rescaling is found for a two-particle system where the rescaling is exact. A detailed comparison between finite Hilbert space calculations and exact results for up to five particles show that rescaling can significantly improve the accuracy of numerical calculations in various external potentials. In addition to ground-state energies, the low-lying excitation spectrum, density profile, and correlation functions are studied. The results give a promising outlook for numerical simulations of trapped ultracold atoms.

  2. Gaussian streaming with the truncated Zel'dovich approximation

    Science.gov (United States)

    Kopp, Michael; Uhlemann, Cora; Achitouv, Ixandra

    2016-12-01

    We calculate the halo correlation function in redshift space using the Gaussian streaming model (GSM). To determine the scale-dependent functions entering the GSM, we use local Lagrangian bias together with convolution Lagrangian perturbation theory (CLPT), which constitutes an approximation to the Post-Zel'dovich approximation. On the basis of N -body simulations, we demonstrate that a smoothing of the initial conditions with the Lagrangian radius improves the Zel'dovich approximation and its ability to predict the displacement field of protohalos. Based on this observation, we implement a "truncated" CLPT by smoothing the initial power spectrum and investigate the dependence of the streaming model ingredients on the smoothing scale. We find that the real space correlation functions of halos and their mean pairwise velocity are optimized if the coarse graining scale is chosen to be 1 Mpc /h at z =0 , while the pairwise velocity dispersion is optimized if the smoothing scale is chosen to be the Lagrangian size of the halo. We compare theoretical results for the halo correlation function in redshift space to measurements within the Horizon run 2 N -body simulation halo catalog. We find that this simple two-filter smoothing procedure in the spirit of the truncated Zel'dovich approximation significantly improves the GSM +CLPT prediction of the redshift space halo correlation function over the whole mass range from large galaxy to galaxy cluster-sized halos. We expect that the necessity for two filter scales is an artifact of our local bias model, and that once a more physical bias model is implemented in CLPT, the only physically relevant smoothing scale will be related to the Lagrangian radius, in accord with our findings based on N -body simulations.

  3. Effects of truncated Gaussian beam on the performance of fiber optical synthetic aperture system

    Institute of Scientific and Technical Information of China (English)

    LIU Li; WANG Chang-wei; JIANG Yue-song

    2012-01-01

    In the fiber optical synthetic aperture (FOSA) system,the diffraction of the Gaussian beam limited by the aperture in exit pupil plane of fiber collimator is studied theoretically,and the axial and transverse irradiance distributions are obtained.The point spread function (PSF) and modulation transfer function (MTF) of the truncated Gaussian beam array are computed numerically with different truncation factors.The results show that the diffraction of the truncated Gaussian beam array agrees with the uniform-beam Rayleigh diffraction when the truncation factor is less than 0.5,but little power is transmitted.The PSF and MTF are degraded,but more power can be contained when the truncation factor is larger.The selection of the truncation factor is a trade-off between the loss of transmission and the qualities of PSF and MTF in practical application.

  4. Efficient linear precoding for massive MIMO systems using truncated polynomial expansion

    KAUST Repository

    Müller, Axel

    2014-06-01

    Massive multiple-input multiple-output (MIMO) techniques have been proposed as a solution to satisfy many requirements of next generation cellular systems. One downside of massive MIMO is the increased complexity of computing the precoding, especially since the relatively \\'antenna-efficient\\' regularized zero-forcing (RZF) is preferred to simple maximum ratio transmission. We develop in this paper a new class of precoders for single-cell massive MIMO systems. It is based on truncated polynomial expansion (TPE) and mimics the advantages of RZF, while offering reduced and scalable computational complexity that can be implemented in a convenient parallel fashion. Using random matrix theory we provide a closed-form expression of the signal-to-interference-and-noise ratio under TPE precoding and compare it to previous works on RZF. Furthermore, the sum rate maximizing polynomial coefficients in TPE precoding are calculated. By simulation, we find that to maintain a fixed peruser rate loss as compared to RZF, the polynomial degree does not need to scale with the system, but it should be increased with the quality of the channel knowledge and signal-to-noise ratio. © 2014 IEEE.

  5. Cross-layer combining of adaptive modulation and truncated ARQ under cognitive radio resource requirements

    KAUST Repository

    Yang, Yuli

    2012-11-01

    In addressing the issue of taking full advantage of the shared spectrum under imposed limitations in a cognitive radio (CR) network, we exploit a cross-layer design for the communications of secondary users (SUs), which combines adaptive modulation and coding (AMC) at the physical layer with truncated automatic repeat request (ARQ) protocol at the data link layer. To achieve high spectral efficiency (SE) while maintaining a target packet loss probability (PLP), switching among different transmission modes is performed to match the time-varying propagation conditions pertaining to the secondary link. Herein, by minimizing the SU\\'s packet error rate (PER) with each transmission mode subject to the spectrum-sharing constraints, we obtain the optimal power allocation at the secondary transmitter (ST) and then derive the probability density function (pdf) of the received SNR at the secondary receiver (SR). Based on these statistics, the SU\\'s packet loss rate and average SE are obtained in closed form, considering transmissions over block-fading channels with different distributions. Our results quantify the relation between the performance of a secondary link exploiting the cross-layer-designed adaptive transmission and the interference inflicted on the primary user (PU) in CR networks. © 1967-2012 IEEE.

  6. Tracking and flavour-tagging performance for HV-CMOS sensors in the context of the ATLAS ITK pixel simulation program

    Science.gov (United States)

    Calandri, A.; Vacavant, L.; Barbero, M.; Rozanov, A.; Djama, F.

    2016-12-01

    The HV-CMOS (High Voltage - Complementary Metal-Oxide Semiconductor) pixel technology has recently risen interest for the upgrade of the pixel detector of the ATLAS experiment towards the High Luminosity phase of the Large Hadron Collider (LHC) . HV-CMOS sensors can be employed in the pixel outer layers (R >15 cm), where the radiation hardness requirements are less stringent, as they could instrument large areas at a relatively low cost. In addition, smaller pixel granularity can be achieved by exploiting sub-pixel encoding technology. Therefore, the largest impact on physics performance, tracking and flavour tagging, could be reached if exploited in the innermost layer (in place of the current IBL) or in the next-to-innermost layer. This proceeding will present studies on tracking and flavour-tagging performance in presence of HV-CMOS sensors in the innermost layer of the ATLAS detector.

  7. Reduction of truncation artifacts in CT images via a discriminative dictionary representation method

    Science.gov (United States)

    Chen, Yang; Li, Ke; Li, Yinsheng; Hsieh, Jiang; Chen, Guang-Hong

    2016-04-01

    When the scan field of view (SFOV) of a CT system is not large enough to enclose the entire cross-section of a patient, or the patient needs to be intentionally positioned partially outside the SFOV for certain clinical CT scans, truncation artifacts are often observed in the reconstructed CT images. Conventional wisdom to reduce truncation artifacts is to complete the truncated projection data via data extrapolation with different a priori assumptions. This paper presents a novel truncation artifact reduction method that directly works in the CT image domain. Specifically, a discriminative dictionary that includes a sub-dictionary of truncation artifacts and a sub-dictionary of non-artifact image information was used to separate a truncation artifact-contaminated image into two sub-images, one with reduced truncation artifacts, and the other one containing only the truncation artifacts. Both experimental phantom and retrospective human subject studies have been performed to characterize the performance of the proposed truncation artifact reduction method.

  8. Propagation of time-truncated Airy-type pulses in media with quadratic and cubic dispersion

    CERN Document Server

    Hernández, José Angel Borda; Shaarawi, Amr; Besieris, Ioannis M

    2015-01-01

    In this paper, we describe analytically the propagation of Airy-type pulses truncated by a finite-time aperture when second and third order dispersion effects are considered. The mathematical method presented here, based on the superposition of exponentially truncated Airy pulses, is very effective, allowing us to avoid the use of time-consuming numerical simulations. We analyze the behavior of the time truncated Ideal-Airy pulse and also the interesting case of a time truncated Airy pulse with a "defect" in its initial profile, which reveals the self-healing property of this kind of pulse solution.

  9. Transcriptome comparative profiling of barley eibi1 mutant reveals pleiotropic effects of HvABCG31 gene on cuticle biogenesis and stress responsive pathways.

    Science.gov (United States)

    Yang, Zujun; Zhang, Tao; Lang, Tao; Li, Guangrong; Chen, Guoxiong; Nevo, Eviatar

    2013-10-14

    Wild barley eibi1 mutant with HvABCG31 gene mutation has low capacity to retain leaf water, a phenotype associated with reduced cutin deposition and a thin cuticle. To better understand how such a mutant plant survives, we performed a genome-wide gene expression analysis. The leaf transcriptomes between the near-isogenic lines eibi1 and the wild type were compared using the 22-k Barley1 Affymetrix microarray. We found that the pleiotropic effect of the single gene HvABCG31 mutation was linked to the co-regulation of metabolic processes and stress-related system. The cuticle development involved cytochrome P450 family members and fatty acid metabolism pathways were significantly up-regulated by the HvABCG31 mutation, which might be anticipated to reduce the levels of cutin monomers or wax and display conspicuous cuticle defects. The candidate genes for responses to stress were induced by eibi1 mutant through activating the jasmonate pathway. The down-regulation of co-expressed enzyme genes responsible for DNA methylation and histone deacetylation also suggested that HvABCG31 mutation may affect the epigenetic regulation for barley development. Comparison of transcriptomic profiling of barley under biotic and abiotic stresses revealed that the functions of HvABCG31 gene to high-water loss rate might be different from other osmotic stresses of gene mutations in barley. The transcriptional profiling of the HvABCG31 mutation provided candidate genes for further investigation of the physiological and developmental changes caused by the mutant.

  10. Transcriptome Comparative Profiling of Barley eibi1 Mutant Reveals Pleiotropic Effects of HvABCG31 Gene on Cuticle Biogenesis and Stress Responsive Pathways

    Directory of Open Access Journals (Sweden)

    Eviatar Nevo

    2013-10-01

    Full Text Available Wild barley eibi1 mutant with HvABCG31 gene mutation has low capacity to retain leaf water, a phenotype associated with reduced cutin deposition and a thin cuticle. To better understand how such a mutant plant survives, we performed a genome-wide gene expression analysis. The leaf transcriptomes between the near-isogenic lines eibi1 and the wild type were compared using the 22-k Barley1 Affymetrix microarray. We found that the pleiotropic effect of the single gene HvABCG31 mutation was linked to the co-regulation of metabolic processes and stress-related system. The cuticle development involved cytochrome P450 family members and fatty acid metabolism pathways were significantly up-regulated by the HvABCG31 mutation, which might be anticipated to reduce the levels of cutin monomers or wax and display conspicuous cuticle defects. The candidate genes for responses to stress were induced by eibi1 mutant through activating the jasmonate pathway. The down-regulation of co-expressed enzyme genes responsible for DNA methylation and histone deacetylation also suggested that HvABCG31 mutation may affect the epigenetic regulation for barley development. Comparison of transcriptomic profiling of barley under biotic and abiotic stresses revealed that the functions of HvABCG31 gene to high-water loss rate might be different from other osmotic stresses of gene mutations in barley. The transcriptional profiling of the HvABCG31 mutation provided candidate genes for further investigation of the physiological and developmental changes caused by the mutant.

  11. HvEXPB7, a novel β-expansin gene revealed by the root hair transcriptome of Tibetan wild barley, improves root hair growth under drought stress.

    Science.gov (United States)

    He, Xiaoyan; Zeng, Jianbin; Cao, Fangbin; Ahmed, Imrul Mosaddek; Zhang, Guoping; Vincze, Eva; Wu, Feibo

    2015-12-01

    Tibetan wild barley is a treasure trove of useful genes for crop improvement including abiotic stress tolerance, like drought. Root hair of single-celled structures plays an important role in water and nutrition uptake. Polyethylene-glycol-induced drought stress hydroponic/petri-dish experiments were performed, where root hair morphology and transcriptional characteristics of two contrasting Tibetan wild barley genotypes (drought-tolerant XZ5 and drought-sensitive XZ54) and drought-tolerant cv. Tadmor were compared. Drought-induced root hair growth was only observed in XZ5. Thirty-six drought tolerance-associated genes were identified in XZ5, including 16 genes specifically highly expressed in XZ5 but not Tadmor under drought. The full length cDNA of a novel β-expansin gene (HvEXPB7), being the unique root hair development related gene in the identified genes, was cloned. The sequence comparison indicated that HvEXPB7 carried both DPBB_1 and Pollon_allerg_1 domains. HvEXPB7 is predominantly expressed in roots. Subcellular localization verified that HvEXPB7 is located in the plasma membrane. Barley stripe mosaic virus induced gene silencing (BSMV-VIGS) of HvEXPB7 led to severely suppressed root hairs both under control and drought conditions, and significantly reduced K uptake. These findings highlight and confer the significance of HvEXPB7 in root hair growth under drought stress in XZ5, and provide a novel insight into the genetic basis for drought tolerance in Tibetan wild barley.

  12. Risk factors associated with BoHV-1 and BVDV seropositivity in buffaloes (Bubalus bubalis from the State of Paraiba, Northeastern Brazil

    Directory of Open Access Journals (Sweden)

    Leise Gomes Fernandes

    2016-08-01

    Full Text Available This study aimed to identify the risk factors associated with Bovine Herpesvirus Type 1 (BoHV-1 and Bovine Viral Diarrhea Virus (BVDV infections in buffaloes in the State of Paraíba, Northeastern Brazil, using 136 female buffaloes ? 24 months old from 14 herds. For the serological diagnosis of the BoHV-1 and BVDV infections, the virus-neutralization test (VN was used and in each herd, an epidemiological questionnaire was applied in order to obtain data to be used in the risk factor analysis. Of the 136 animals 86 (63.2% were positive for BoHV-1 and 12 (8.8% for BVDV. The presence of watering points (odds ratio = 17.68; 95% CI = 3.74 – 83.04 was identified as risk factor for BoHv-1, and animal purchasing was a risk factor for both BoHV-1 (odds ratio = 68.64; 95% CI = 12.28 – 383.73 and BVDV (odds ratio = 3.64; 95% CI = 1.04 – 12.76. The results from the present study showed an evidence of the presence of BoHV-1 and BVDV infections in buffaloes from the State of Paraíba, Northeastern Brazil. It is suggested that control and prevention measures should be adopted, such as the use of diagnostic tests prior to animal purchasing and the use of vaccines to avoid the introduction of infected animals into the herds and the consequent dissemination of the infections, minimizing economic losses.

  13. Sequence Analysis of Mitochondrial DNA HV1 Region of Shed Hairs%脱落毛发线粒体DNA HV1区序列测定的研究

    Institute of Scientific and Technical Information of China (English)

    刘冰; 陈松; 张纯斌; 赵鑫

    1999-01-01

    目的对脱落毛发线粒体DNA HV1区序列测定方法进行研究.方法嵌合扩增结合末端荧光标记DNA测序.结果对20例脱落毛发进行分析获得了明确的测序结果,与来自同一个体的血液所测得的DNA序列进行比较,完全相同.结论嵌合扩增在对脱落毛发进行线粒体DNA多变区序列分析中是一种有效的方法,在法医DNA检验中具有实用价值.

  14. Solar light (hv) and H2O2/hv photo-disinfection of natural alkaline water (pH 8.6) in a compound parabolic collector at different day periods in Sahelian region.

    Science.gov (United States)

    Ndounla, J; Pulgarin, C

    2015-11-01

    The photo-disinfection of natural alkaline surface water (pH 8.6 ± 0.3) for drinking purposes was carried out under solar radiation treatments. The enteric bacteria studied were the wild total coliforms/Escherichia coli (10(4) CFU/ml) and Salmonella spp. (10(4) CFU/ml) naturally present in the water. The photo-disinfection of a 25-l water sample was carried out in a solar compound parabolic collector (CPC) in the absence and in the presence of hydrogen peroxide (H2O2). The addition of H2O2 (10 mg/L) to the sample water was sufficient to enhance the photo-disinfection and ensure an irreversible lethal action on the wild enteric bacteria contents of the sample. The inactivation kinetic of the system was significantly enhanced compared to the one carried out without H2O2 addition. The effect of the solar radiation parameters on the efficiency of the photo-disinfection were assessed. The pH has increased during the treatment in all the photo-disinfection processes (hv and H2O2/hv). The Salmonella spp strain has shown the best effective inactivate time in alkaline water than the one recorded under acidic or near-neutral conditions. The evolution of some physico-chemical parameters of the water (turbidity, NO2(-), NO3(-), NH4(+), HPO4(2-), and bicarbonate (HCO3(-))) was monitored during the treatment. Finally, the possible mechanistic process involved during the enteric bacteria inactivation was suggested.

  15. Mechanosensitive Channels

    Science.gov (United States)

    Martinac, Boris

    Living cells are exposed to a variety of mechanical stimuli acting throughout the biosphere. The range of the stimuli extends from thermal molecular agitation to potentially destructive cell swelling caused by osmotic pressure gradients. Cellular membranes present a major target for these stimuli. To detect mechanical forces acting upon them cell membranes are equipped with mechanosensitive (MS) ion channels. Functioning as molecular mechanoelectrical transducers of mechanical forces into electrical and/or chemical intracellular signals these channels play a critical role in the physiology of mechanotransduction. Studies of prokaryotic MS channels and recent work on MS channels of eukaryotes have significantly increased our understanding of their gating mechanism, physiological functions, and evolutionary origins as well as their role in the pathology of disease.

  16. Simultaneous nonlinear encryption of grayscale and color images based on phase-truncated fractional Fourier transform and optical superposition principle.

    Science.gov (United States)

    Wang, Xiaogang; Zhao, Daomu

    2013-09-01

    A nonlinear color and grayscale images cryptosystem based on phase-truncated fractional Fourier transform and optical superposition principle is proposed. In order to realize simultaneous encryption of color and grayscale images, each grayscale image is first converted into two phase masks by using an optical coherent superposition, one of which is treated as a part of input information that will be fractional Fourier transformed while the other in the form of a chaotic random phase mask (CRPM) is used as a decryption key. For the purpose of optical performance, all the processes are performed through three channels, i.e., red, green, and blue. Different from most asymmetric encryption methods, the decryption process is designed to be linear for the sake of effective decryption. The encryption level of a double random phase encryption based on phase-truncated Fourier transform is enhanced by extending it into fractional Fourier domain and the load of the keys management and transmission is lightened by using CRPMs. The security of the proposed cryptosystem is discussed and computer simulation results are presented to verify the validity of the proposed method.

  17. Installation of a TCT set-up for characterization of novel HV-CMOS planar silicon sensors

    CERN Document Server

    Marx, Lisa

    2013-01-01

    For future upgrades of the LHC it is necessary to develop new tracking detectors: more radiation hard and cost efficient pixel detectors with high spacial resolution are required for the planned high luminosity version of the LHC (HL-LHC). For future tracking devices HV-CMOS active pixel sensors are great candidates since they fulfill all the demands mentioned above. First prototypes of these sensors are assembled on custom test boards and together with FE-I4 readout chips they make up the first test pixel detectors. One approach for testing these chips is through using lasers to induce electron-hole-pairs into the depletion zone of the sensor chip diodes to simulate an ionizing particle crossing through the bulk. Comparison measurements of irradiated/non-irradiated sensors are used to explore the radiation hardness of the sensors.

  18. Mechanical Fault Diagnosis for HV Circuit Breakers Based on Ensemble Empirical Mode Decomposition Energy Entropy and Support Vector Machine

    Directory of Open Access Journals (Sweden)

    Jianfeng Zhang

    2015-01-01

    Full Text Available During the operation process of the high voltage circuit breaker, the changes of vibration signals can reflect the machinery states of the circuit breaker. The extraction of the vibration signal feature will directly influence the accuracy and practicability of fault diagnosis. This paper presents an extraction method based on ensemble empirical mode decomposition (EEMD. Firstly, the original vibration signals are decomposed into a finite number of stationary intrinsic mode functions (IMFs. Secondly, calculating the envelope of each IMF and separating the envelope by equal-time segment and then forming equal-time segment energy entropy to reflect the change of vibration signal are performed. At last, the energy entropies could serve as input vectors of support vector machine (SVM to identify the working state and fault pattern of the circuit breaker. Practical examples show that this diagnosis approach can identify effectively fault patterns of HV circuit breaker.

  19. Integration of V2H/V2G Hybrid System for Demand Response in Distribution Network

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Yubo; Sheikh, Omar; Hu, Boyang; Chu, Chi-Cheng; Gadh, Rajit

    2014-11-03

    Integration of Electrical Vehicles (EVs) with power grid not only brings new challenges for load management, but also opportunities for distributed storage and generation in distribution network. With the introduction of Vehicle-to-Home (V2H) and Vehicle-to-Grid (V2G), EVs can help stabilize the operation of power grid. This paper proposed and implemented a hybrid V2H/V2G system with commercialized EVs, which is able to support both islanded AC/DC load and the power grid with one single platform. Standard industrial communication protocols are implemented for a seamless respond to remote Demand Respond (DR) signals. Simulation and implementation are carried out to validate the proposed design. Simulation and implementation results showed that the hybrid system is capable of support critical islanded DC/AC load and quickly respond to the remote DR signal for V2G within 1.5kW of power range.

  20. Terrestrial planet formation from a truncated disk -- The 'Grand Tack'

    Science.gov (United States)

    Walsh, K. J.; Morbidelli, A.; Raymond, S.; O'Brien, D. P.; Mandell, A. M.

    2012-12-01

    A new terrestrial planet formation model (Walsh et al., 2011) explores the effects of a two-stage, inward-then-outward migration of Jupiter and Saturn, as found in numerous hydrodynamical simulations of giant planet formation (Masset & Snellgrove 2001, Morbidelli & Crida 2007, Pierens & Nelson 2008, Pierens & Raymond 2011). The inward migration of Jupiter truncates the disk of planetesimals and embryos in the terrestrial planet region. Subsequent accretion in that region then forms the terrestrial planets, in particular it produces the correct Earth/Mars mass ratio, which has been difficult to reproduce in simulations with a self-consistent set of initial conditions (see, eg. Raymond et al. 2009, Hansen 2009). Additionally, the outward migration of the giant planets populates the asteroid belt with distinct populations of bodies, with the inner belt filled by bodies originating inside of 3 AU, and the outer belt filled with bodies originating from beyond the giant planets. This differs from previous models of terrestrial planet formation due to the early radial mixing of material due to the giant planet's substantial migration. Specifically, the assumption that the current radial distribution of material in the inner Solar System is reflective of the primordial distribution of material in that region is no longer necessary. We will discuss the implications of this model in relation to previous models of terrestrial planet formation as well as available chemical and isotopic constraints.

  1. Projection-free approximate balanced truncation of large unstable systems

    CERN Document Server

    Flinois, Thibault L B; Schmid, Peter J

    2015-01-01

    In this article, we show that the projection-free, snapshot-based, balanced truncation method can be applied directly to unstable systems. We prove that even for unstable systems, the unmodified balanced proper orthogonal decomposition algorithm theoretically yields a converged transformation that balances the Gramians (including the unstable subspace). We then apply the method to a spatially developing unstable system and show that it results in reduced-order models of similar quality to the ones obtained with existing methods. Due to the unbounded growth of unstable modes, a practical restriction on the final impulse response simulation time appears, which can be adjusted depending on the desired order of the reduced-order model. Recommendations are given to further reduce the cost of the method if the system is large and to improve the performance of the method if it does not yield acceptable results in its unmodified form. Finally, the method is applied to the linearized flow around a cylinder at Re = 100...

  2. Transcriptional Truncation of the Long Coding Imprinted Gene Usp29.

    Directory of Open Access Journals (Sweden)

    Hongzhi He

    Full Text Available Usp29 (Ubiquitin-specific protease 29 is a paternally expressed gene located upstream of another imprinted gene Peg3. In the current study, the transcription of this long coding gene spanning a 250-kb genomic distance was truncated using a knockin allele. According to the results, paternal transmission of the mutant allele resulted in reduced body and litter sizes whereas the maternal transmission caused no obvious effects. In the paternal mutant, the expression levels of Usp29 were reduced to 14-18% level of the wild-type littermates due to the Poly-A signal included in the knockin cassette. Expression analyses further revealed an unusual female-specific up-regulation of the adjacent imprinted gene Zfp264 in the mutant. Consistent with this, the promoter of Zfp264 was hypomethylated only in the female mutant. Interestingly, this female-specific hypomethylation by the knockin allele was not detected in the offspring of an interspecific crossing, indicating its sensitivity to genetic background. Overall, the results suggest that the transcription of Usp29 may be involved in DNA methylation setting of Zfp264 promoter in a sex-specific manner.

  3. Efficient Algorithms for Generating Truncated Multivariate Normal Distributions

    Institute of Scientific and Technical Information of China (English)

    Jun-wu YU; Guo-liang TIAN

    2011-01-01

    Sampling from a truncated multivariate normal distribution (TMVND) constitutes the core computational module in fitting many statistical and econometric models.We propose two efficient methods,an iterative data augmentation (DA) algorithm and a non-iterative inverse Bayes formulae (IBF) sampler,to simulate TMVND and generalize them to multivariate normal distributions with linear inequality constraints.By creating a Bayesian incomplete-data structure,the posterior step of the DA algorithm directly generates random vector draws as opposed to single element draws,resulting obvious computational advantage and easy coding with common statistical software packages such as S-PLUS,MATLAB and GAUSS.Furthermore,the DA provides a ready structure for implementing a fast EM algorithm to identify the mode of TMVND,which has many potential applications in statistical inference of constrained parameter problems.In addition,utilizing this mode as an intermediate result,the IBF sampling provides a novel alternative to Gibbs sampling and eliminates problems with convergence and possible slow convergence due to the high correlation between components of a TMVND.The DA algorithm is applied to a linear regression model with constrained parameters and is illustrated with a published data set.Numerical comparisons show that the propoeed DA algorithm and IBF sampler are more efficient than the Gibbs sampler and the accept-reject algorithm.

  4. Theoretical study of hydrogen storage in a truncated tetrahedron hydrocarbon

    Science.gov (United States)

    Ishikawa, Shigeru; Yamabe, Tokio

    2017-02-01

    A hydrocarbon molecule, having a truncated tetrahedron shape with a suitable size for the storage of a hydrogen molecule, is designed using quantum chemical methods. The molecule consists of four benzene rings bridged by six vinylene groups at the 1, 3, and 5 carbon positions of each ring, and has a stoichiometry of C36H24. The molecular geometry optimized under T d symmetry by the B3LYP/cc-pVTZ method shows no imaginary frequencies. The size of the molecular cavity, measured by the distance between opposite vinylene groups, is 8.0 Å. The cavity has four openings along each tetrahedron face. The radius of the opening is approximately 2 Å. The system interacting with a hydrogen molecule is optimized by the MP2/cc-pVTZ method. The interaction energy is evaluated by an extrapolation method through increasing the basis set size of the hydrogen molecule from the cc-pVTZ to the cc-pV6Z with counterpoise corrections. The hydrogen molecule enters the opening by overcoming an energy barrier of +730 meV and locates at the center of the cavity with a binding energy of -140 meV. The high barrier arises from the small size of the opening. The binding energy is three times larger than that of a graphite surface and may allow hydrogen storage at milder temperatures and pressures than those required with graphite.

  5. Truncation identities for the small polaron fusion hierarchy

    Science.gov (United States)

    Grabinski, André M.; Frahm, Holger

    2013-04-01

    We study a one-dimensional lattice model of interacting spinless fermions. This model is integrable for both periodic and open boundary conditions; the latter case includes the presence of Grassmann valued non-diagonal boundary fields breaking the bulk U(1) symmetry of the model. Starting from the embedding of this model into a graded Yang-Baxter algebra, an infinite hierarchy of commuting transfer matrices is constructed by means of a fusion procedure. For certain values of the coupling constant related to anisotropies of the underlying vertex model taken at roots of unity, this hierarchy is shown to truncate giving a finite set of functional equations for the spectrum of the transfer matrices. For generic coupling constants, the spectral problem is formulated in terms of a functional (or TQ-)equation which can be solved by Bethe ansatz methods for periodic and diagonal open boundary conditions. Possible approaches for the solution of the model with generic non-diagonal boundary fields are discussed.

  6. Photoevaporation as a Truncation Mechanism for Circumplanetary Disks

    CERN Document Server

    Mitchell, Tyler R

    2011-01-01

    We investigate the conditions under which the regular satellites of Jupiter and Saturn formed. The final stage of giant planet accretion is thought to occur slowly over a relatively long, 10 Myr, timescale. Gas accretion during this stage, through a completely or partially opened gap in the solar nebula, occurs slowly allowing for the condensation of ices, and incomplete differentiation, seen in the regular satellites of the giant planets. Furthermore, the dichotomy seen in the Jovian and Saturnian systems may be explained as this infall wanes or is completely shutoff as a result of gap opening or global depletion of gas in the solar nebula. We present one-dimensional simulations of circumplanetary disks that couple the viscous transport of material with the loss of mass at the disk outer edge by ultraviolet photoevaporation as well as the infall of material from the solar nebula. We find that the circumplanetary disks of these protoplanets are truncated, as a result of photoevaporation, at a range of values ...

  7. Proteolysis of truncated hemolysin A yields a stable dimerization interface

    Energy Technology Data Exchange (ETDEWEB)

    Novak, Walter R.P.; Bhattacharyya, Basudeb; Grilley, Daniel P.; Weaver, Todd M. (Wabash); (UW)

    2017-02-21

    Wild-type and variant forms of HpmA265 (truncated hemolysin A) fromProteus mirabilisreveal a right-handed, parallel β-helix capped and flanked by segments of antiparallel β-strands. The low-salt crystal structures form a dimeric structureviathe implementation of on-edge main-chain hydrogen bonds donated by residues 243–263 of adjacent monomers. Surprisingly, in the high-salt structures of two variants, Y134A and Q125A-Y134A, a new dimeric interface is formedviamain-chain hydrogen bonds donated by residues 203–215 of adjacent monomers, and a previously unobserved tetramer is formed. In addition, an eight-stranded antiparallel β-sheet is formed from the flap regions of crystallographically related monomers in the high-salt structures. This new interface is possible owing to additional proteolysis of these variants after Tyr240. The interface formed in the high-salt crystal forms of hemolysin A variants may mimic the on-edge β-strand positioning used in template-assisted hemolytic activity.

  8. Influence of miscut on crystal truncation rod scattering

    Energy Technology Data Exchange (ETDEWEB)

    Munkholm, A.; Brennan, S. [Stanford Univ., CA (United States). Synchrotron Radiat. Lab.

    1999-04-01

    X-rays can be used to measure the roughness of a surface by the study of crystal truncation rod scattering. It is shown that for a simple cubic lattice the presence of a miscut surface with a regular step array has no effect on the scattered intensity of a single rod and that a distribution of terrace widths on the surface is shown to have the same effect as adding roughness to the surface. For a perfect crystal without miscut, the scattered intensity is the sum of the intensity from all the rods with the same in-plane momentum transfer. For all real crystals, the scattered intensity is better described as that from a single rod. It is shown that data-collection strategies must correctly account for the sample miscut or there is a potential for improperly measuring the rod intensity. This can result in an asymmetry in the rod intensity above and below the Bragg peak, which can be misinterpreted as being due to a relaxation of the surface. The calculations presented here are compared with data for silicon (001) wafers with 0.1 and 4 miscuts. (orig.) 22 refs.

  9. Scheduling multirobot operations in manufacturing by truncated Petri nets

    Science.gov (United States)

    Chen, Qin; Luh, J. Y.

    1995-08-01

    Scheduling of operational sequences in manufacturing processes is one of the important problems in automation. Methods of applying Petri nets to model and analyze the problem with constraints on precedence relations, multiple resources allocation, etc. have been available in literature. Searching for an optimum schedule can be implemented by combining the branch-and-bound technique with the execution of the timed Petri net. The process usually produces a large Petri net which is practically not manageable. This disadvantage, however, can be handled by a truncation technique which divides the original large Petri net into several smaller size subnets. The complexity involved in the analysis of each subnet individually is greatly reduced. However, when the locally optimum schedules of the resulting subnets are combined together, it may not yield an overall optimum schedule for the original Petri net. To circumvent this problem, algorithms are developed based on the concepts of Petri net execution and modified branch-and-bound process. The developed technique is applied to a multi-robot task scheduling problem of the manufacturing work cell.

  10. Adaptive designs based on the truncated product method

    Directory of Open Access Journals (Sweden)

    Neuhäuser Markus

    2005-09-01

    Full Text Available Abstract Background Adaptive designs are becoming increasingly important in clinical research. One approach subdivides the study into several (two or more stages and combines the p-values of the different stages using Fisher's combination test. Methods Alternatively to Fisher's test, the recently proposed truncated product method (TPM can be applied to combine the p-values. The TPM uses the product of only those p-values that do not exceed some fixed cut-off value. Here, these two competing analyses are compared. Results When an early termination due to insufficient effects is not appropriate, such as in dose-response analyses, the probability to stop the trial early with the rejection of the null hypothesis is increased when the TPM is applied. Therefore, the expected total sample size is decreased. This decrease in the sample size is not connected with a loss in power. The TPM turns out to be less advantageous, when an early termination of the study due to insufficient effects is possible. This is due to a decrease of the probability to stop the trial early. Conclusion It is recommended to apply the TPM rather than Fisher's combination test whenever an early termination due to insufficient effects is not suitable within the adaptive design.

  11. A novel model reduction method based on balanced truncation

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    The main goal of this paper is to construct an efficient reduced-order model (ROM) for unsteady aerodynamic force modeling. Balanced truncation (BT) is presented to address the problem. For conventional BT method, it is necessary to compute exact controllability and observability grammians. Although it is relatively straightforward to compute these matrices in a control setting where the system order is moderate, the technique does not extend easily to high order systems. In response to the challenge, snapshots-BT (S-BT) method is introduced for high order system ROM construction. The outline idea of the S-BT method is that snapshots of primary and dual system approximate the controllability and observability matrices in the frequency domain. The method has been demonstrated for 3 high order systems: (1) unsteady motion of a two-dimensional airfoil in response to gust, (2) AGARD 445.6 wing aeroelastic system, and (3) BACT (benchmark active control technology) standard aeroservoelastic system. All the results indicate that S-BT based ROM is efficient and accurate enough to provide a powerful tool for unsteady aerodynamic force modeling.

  12. Truncation of the krebs cycle during hypoglycemic coma.

    Science.gov (United States)

    Sutherland, Garnette R; Tyson, Randy L; Auer, Roland N

    2008-07-01

    There is a misconception that hypoglycemic nerve cell death occurs easily, and can happen in the absence of coma. In fact, coma is the prerequisite for neuronal death, which occurs via metabolic excitatory amino acid release. The focus on nerve cell death does not explain how most brain neurons and all glia survive. Brain metabolism was interrogated in rats during and following recovery from 40 min of profound hypoglycemia using ex vivo (1)H MR spectroscopy to determine alterations accounting for survival of brain tissue. As previously shown, a time-dependent increase in aspartate was equaled by a reciprocal decrease in glutamate/glutamine. We here show that the kinetics of aspartate formation during the first 30 min (0.36 +/- 0.03 micromol g(-1) min(-1)) are altered such that glutamate, via aspartate aminotransferase, becomes the primary source of carbon when glucose-derived pyruvate is unavailable. Oxaloacetate is produced directly from alpha-ketoglutarate, so that reactions involving the six-carbon intermediates of the tricarboxylic acid cycle are bypassed. These fundamental observations in basic metabolic pathways in effect redraw the tricarboxylic acid cycle from a tricarboxylic to a dicarboxylic acid cycle during hypoglycemia. The basic neurochemical alterations according to the chemical equilibrium of mass action augments flux through a truncated Krebs cycle that continues to turn during hypoglycemic coma. This explains the partial preservation of energy charge and brain cell survival during periods of glucose deficiency.

  13. On truncated Taylor series and the position of their spurious zeros

    DEFF Research Database (Denmark)

    Christiansen, Søren; Madsen, Per A.

    2006-01-01

    A truncated Taylor series, or a Taylor polynomial, which may appear when treating the motion of gravity water waves, is obtained by truncating an infinite Taylor series for a complex, analytical function. For such a polynomial the position of the complex zeros is considered in case the Taylor...

  14. Bounded real and positive real balanced truncation using Sigma-normalised coprime factors

    NARCIS (Netherlands)

    Trentelman, H. L.

    2009-01-01

    In this article, we will extend the method of balanced truncation using normalised right coprime factors of the system transfer matrix by Meyer (1990) [3] to balanced truncation with preservation of half line dissipativity. Special cases are preservation of positive realness and bounded realness. We

  15. Maps of zeros of truncated generating functions in high energy collisions

    CERN Document Server

    Brambilla, M; Ugoccioni, R

    2006-01-01

    Theorems on zeros of the truncated generating functions in the complex plane are reviewed and applied to the class of power series distributions. These results, when scrutinized in the framework of the truncated generating function of NB (Pascal) MD type, lead to maps of zeros which are different in correspondence to different classes of events in pp collisions at LHC c.m. energies.

  16. Resonant Excitation of a Truncated Metamaterial Cylindrical Shell by a Thin Wire Monopole

    DEFF Research Database (Denmark)

    Kim, Oleksiy S.; Erentok, Aycan; Breinbjerg, Olav

    2009-01-01

    A truncated metamaterial cylindrical shell excited by a thin wire monopole is investigated using the integral equation technique as well as the finite element method. Simulations reveal a strong field singularity at the edge of the truncated cylindrical shell, which critically affects the matching...

  17. Improving on the empirical covariance matrix using truncated PCA with white noise residuals

    CERN Document Server

    Jewson, S

    2005-01-01

    The empirical covariance matrix is not necessarily the best estimator for the population covariance matrix: we describe a simple method which gives better estimates in two examples. The method models the covariance matrix using truncated PCA with white noise residuals. Jack-knife cross-validation is used to find the truncation that maximises the out-of-sample likelihood score.

  18. Inference for shared-frailty survival models with left-truncated data

    NARCIS (Netherlands)

    van den Berg, G.J.; Drepper, B.

    2016-01-01

    Shared-frailty survival models specify that systematic unobserved determinants of duration outcomes are identical within groups of individuals. We consider random-effects likelihood-based statistical inference if the duration data are subject to left-truncation. Such inference with left-truncated da

  19. New results to BDD truncation method for efficient top event probability calculation

    Energy Technology Data Exchange (ETDEWEB)

    Mo, Yuchang; Zhong, Farong; Zhao, Xiangfu [Zhejiang Normal University, Jinhua (China); Yang, Quansheng [Computer Science, Zhejiang Normal University, Nanjing (China); Cui, Gang [School of Computer Science and Technology, Harbin institute of technology, Harbin (China)

    2012-10-15

    A Binary Decision Diagram (BDD) is a graph-based data structure that calculates an exact top event probability (TEP). It has been a very difficult task to develop an efficient BDD algorithm that can solve a large problem since its memory consumption is very high. Recently, in order to solve a large reliability problem within limited computational resources, Jung presented an efficient method to maintain a small BDD size by a BDD truncation during a BDD calculation. In this paper, it is first identified that Jung's BDD truncation algorithm can be improved for a more practical use. Then, a more efficient truncation algorithm is proposed in this paper, which can generate truncated BDD with smaller size and approximate TEP with smaller truncation error. Empirical results showed this new algorithm uses slightly less running time and slightly more storage usage than Jung's algorithm. It was also found, that designing a truncation algorithm with ideal features for every possible fault tree is very difficult, if not impossible. The so-called ideal features of this paper would be that with the decrease of truncation limits, the size of truncated BDD converges to the size of exact BDD, but should never be larger than exact BDD.

  20. A protein-truncating R179X variant in RNF186 confers protection against ulcerative colitis

    NARCIS (Netherlands)

    Rivas, Manuel A.; Graham, Daniel; Sulem, Patrick; Stevens, Christine; Desch, A. Nicole; Goyette, Philippe; Gudbjartsson, Daniel; Jonsdottir, Ingileif; Thorsteinsdottir, Unnur; Degenhardt, Frauke; Mucha, Soeren; Kurki, Mitja I.; Li, Dalin; D'Amato, Mauro; Annese, Vito; Vermeire, Severine; Weersma, Rinse K.; Halfvarson, Jonas; Paavola-Sakki, Paulina; Lappalainen, Maarit; Lek, Monkol; Cummings, Beryl; Tukiainen, Taru; Haritunians, Talin; Halme, Leena; Koskinen, Lotta L. E.; Ananthakrishnan, Ashwin N.; Luo, Yang; Heap, Graham A.; Visschedijk, Marijn C.; MacArthur, Daniel G.; Neale, Benjamin M.; Ahmad, Tariq; Anderson, Carl A.; Brant, Steven R.; Duerr, Richard H.; Silverberg, Mark S.; Cho, Judy H.; Palotie, Aarno; Saavalainen, Paivi; Kontula, Kimmo; Farkkila, Martti; McGovern, Dermot P. B.; Franke, Andre; Stefansson, Kari; Rioux, John D.; Xavier, Ramnik J.; Daly, Mark J.

    2016-01-01

    Protein-truncating variants protective against human disease provide in vivo validation of therapeutic targets. Here we used targeted sequencing to conduct a search for protein-truncating variants conferring protection against inflammatory bowel disease exploiting knowledge of common variants associ

  1. Stellar disk truncations at high z : Probing inside-out galaxy formation

    NARCIS (Netherlands)

    Trujillo, [No Value; Pohlen, M

    2005-01-01

    We have conducted a systematic search for stellar disk truncations in disklike galaxies at intermediate redshift (z <1.1) using the Hubble Ultra Deep Field data. We use the position of the truncation as a direct estimator of the size of the stellar disk. After accounting for the surface brightness e

  2. Robust Stimulation of W1282X-CFTR Channel Activity by a Combination of Allosteric Modulators.

    Directory of Open Access Journals (Sweden)

    Wei Wang

    Full Text Available W1282X is a common nonsense mutation among cystic fibrosis patients that results in the production of a truncated Cystic Fibrosis Transmembrane Conductance Regulator (CFTR channel. Here we show that the channel activity of the W1282X-CFTR polypeptide is exceptionally low in excised membrane patches at normally saturating doses of ATP and PKA (single channel open probability (PO 0.9 when treated with both modulators. VX-770 and curcumin also additively stimulated W1282X-CFTR mediated currents in polarized FRT epithelial monolayers. In this setting, however, the stimulated W1282X-CFTR currents were smaller than those mediated by wild type CFTR (3-5% due presumably to lower expression levels or cell surface targeting of the truncated protein. Combining allosteric modulators of different mechanistic classes is worth considering as a treatment option for W1282X CF patients perhaps when coupled with maneuvers to increase expression of the truncated protein.

  3. A platform-independent method to reduce CT truncation artifacts using discriminative dictionary representations.

    Science.gov (United States)

    Chen, Yang; Budde, Adam; Li, Ke; Li, Yinsheng; Hsieh, Jiang; Chen, Guang-Hong

    2017-01-01

    When the scan field of view (SFOV) of a CT system is not large enough to enclose the entire cross-section of the patient, or the patient needs to be positioned partially outside the SFOV for certain clinical applications, truncation artifacts often appear in the reconstructed CT images. Many truncation artifact correction methods perform extrapolations of the truncated projection data based on certain a priori assumptions. The purpose of this work was to develop a novel CT truncation artifact reduction method that directly operates on DICOM images. The blooming of pixel values associated with truncation was modeled using exponential decay functions, and based on this model, a discriminative dictionary was constructed to represent truncation artifacts and nonartifact image information in a mutually exclusive way. The discriminative dictionary consists of a truncation artifact subdictionary and a nonartifact subdictionary. The truncation artifact subdictionary contains 1000 atoms with different decay parameters, while the nonartifact subdictionary contains 1000 independent realizations of Gaussian white noise that are exclusive with the artifact features. By sparsely representing an artifact-contaminated CT image with this discriminative dictionary, the image was separated into a truncation artifact-dominated image and a complementary image with reduced truncation artifacts. The artifact-dominated image was then subtracted from the original image with an appropriate weighting coefficient to generate the final image with reduced artifacts. This proposed method was validated via physical phantom studies and retrospective human subject studies. Quantitative image evaluation metrics including the relative root-mean-square error (rRMSE) and the universal image quality index (UQI) were used to quantify the performance of the algorithm. For both phantom and human subject studies, truncation artifacts at the peripheral region of the SFOV were effectively reduced, revealing

  4. Prediction of the moments in advection-diffusion lattice Boltzmann method. I. Truncation dispersion, skewness, and kurtosis

    Science.gov (United States)

    Ginzburg, Irina

    2017-01-01

    The effect of the heterogeneity in the soil structure or the nonuniformity of the velocity field on the modeled resident time distribution (RTD) and breakthrough curves is quantified by their moments. While the first moment provides the effective velocity, the second moment is related to the longitudinal dispersion coefficient (kT) in the developed Taylor regime; the third and fourth moments are characterized by their normalized values skewness (Sk) and kurtosis (Ku), respectively. The purpose of this investigation is to examine the role of the truncation corrections of the numerical scheme in kT, Sk, and Ku because of their interference with the second moment, in the form of the numerical dispersion, and in the higher-order moments, by their definition. Our symbolic procedure is based on the recently proposed extended method of moments (EMM). Originally, the EMM restores any-order physical moments of the RTD or averaged distributions assuming that the solute concentration obeys the advection-diffusion equation in multidimensional steady-state velocity field, in streamwise-periodic heterogeneous structure. In our work, the EMM is generalized to the fourth-order-accurate apparent mass-conservation equation in two- and three-dimensional duct flows. The method looks for the solution of the transport equation as the product of a long harmonic wave and a spatially periodic oscillating component; the moments of the given numerical scheme are derived from a chain of the steady-state fourth-order equations at a single cell. This mathematical technique is exemplified for the truncation terms of the two-relaxation-time lattice Boltzmann scheme, using plug and parabolic flow in straight channel and cylindrical capillary with the d2Q9 and d3Q15 discrete velocity sets as simple but illustrative examples. The derived symbolic dependencies can be readily extended for advection by another, Newtonian or non-Newtonian, flow profile in any-shape open-tabular conduits. It is

  5. THEORETICALLY AND NUMERICALLY ASSESSING THE VALIDITY OF EULERIAN TRUNCATION IN STOCHASTIC GROUNDWATER MODELING

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    In this paper, a theoretical and numerical as-sessment of the validity of Eulerian truncation in stochastic modeling is presented. Specifically, we analyze and compare theoretically various existing Eulerian-based first-order tech-niques with and without invoking "Eulerian truncation" and quantify the terms truncated and retained in the stochastic per-turbation equations using high resolution Monte Carlo simula-tions. We also analyze and compare numerically various exist-ing Eulerian-based first-order techniques and Monte Carlo simulation. The obtained results have demonstrated theoreti-cally and numerically that existing Eulerian-based stochastic perturbation techniques are equivalent. The terms truncated are indeed one order higher than those retained. Therefore,we conclude that "Eulerian truncation" is mathematically con-sistent and asymptotic.

  6. Numerical experiments on the efficiency of local grid refinement based on truncation error estimates

    CERN Document Server

    Syrakos, Alexandros; Bartzis, John G; Goulas, Apostolos

    2015-01-01

    Local grid refinement aims to optimise the relationship between accuracy of the results and number of grid nodes. In the context of the finite volume method no single local refinement criterion has been globally established as optimum for the selection of the control volumes to subdivide, since it is not easy to associate the discretisation error with an easily computable quantity in each control volume. Often the grid refinement criterion is based on an estimate of the truncation error in each control volume, because the truncation error is a natural measure of the discrepancy between the algebraic finite-volume equations and the original differential equations. However, it is not a straightforward task to associate the truncation error with the optimum grid density because of the complexity of the relationship between truncation and discretisation errors. In the present work several criteria based on a truncation error estimate are tested and compared on a regularised lid-driven cavity case at various Reyno...

  7. Fibroblasts express OvHV-2 capsid protein in vasculitis lesions of American bison (Bison bison) with experimental sheep-associated malignant catarrhal fever

    Science.gov (United States)

    Sheep-associated malignant catarrhal fever (SA-MCF) caused by ovine herpesvirus-2 (OvHV-2), a '-herpesvirus, is an often fatal disease characterized by lymphoproliferation, vasculitis, and mucosal ulceration in American bison (Bison bison), cattle (Bos taurus), and other clinically susceptible speci...

  8. Analysis of Abnormal Chromatographic Data of Transformer HV Bushing%变压器高压套管色谱异常分析

    Institute of Scientific and Technical Information of China (English)

    刘胜军; 何镔; 刘红春

    2012-01-01

    The reason of abnormal chromatographic data of 220kV capacitive oil-paper HV bushing is analyzed. The preventive measures are presented.%分析了一起220kV电容式油纸高压套管色谱异常的故障原因,并提出了预防措施。

  9. Overexpression of the barley aquaporin HvPIP2;1 increases internal CO(2) conductance and CO(2) assimilation in the leaves of transgenic rice plants.

    Science.gov (United States)

    Hanba, Yuko T; Shibasaka, Mineo; Hayashi, Yasuyuki; Hayakawa, Takahiko; Kasamo, Kunihiro; Terashima, Ichiro; Katsuhara, Maki

    2004-05-01

    The internal conductance for CO(2) diffusion (g(i)) and CO(2) assimilation rate were measured and the related anatomical characteristics were investigated in transgenic rice leaves that overexpressed barley aquaporin HvPIP2;1. This study was performed to test the hypothesis that aquaporin facilitates CO(2) diffusion within leaves. The g(i) value was estimated for intact leaves by concurrent measurements of gas exchange and carbon isotope ratio. The leaves of the transgenic rice plants that expressed the highest levels of Aq-anti-HvPIP2;1 showed a 40% increase in g(i) as compared to g(i) in the leaves of wild-type rice plants. The increase in g(i) was accompanied by a 14% increase in CO(2) assimilation rate and a 27% increase in stomatal conductance (g(s)). The transgenic plants that had low levels of Aq-anti-HvPIP2;1 showed decreases in g(i) and CO(2) assimilation rate. In the plants with high levels of Aq-anti-HvPIP2;1, mesophyll cell size decreased and the cell walls of the epidermis and mesophyll cells thickened, indicating that the leaves had become xeromorphic. Although such anatomical changes could partially offset the increase in g(i) by the aquaporin, the increase in aquaporin content overcame such adverse effects.

  10. Barley HvPAPhy_a as transgene provides high and stable phytase activities in mature barley straw and in grains

    DEFF Research Database (Denmark)

    Holme, Inger; Dionisio, Giuseppe; Madsen, Claus Krogh

    2017-01-01

    The phytase purple acid phosphatase (HvPAPhy_a) expressed during barley seed development was evaluated as transgene for overexpression in barley. The phytase was expressed constitutively driven by the cauliflower mosaic virus 35S-promoter, and the phytase activity was measured in the mature grain...

  11. Evaluation of the mature grain phytase candidate HvPAPhy_a gene in barley (Hordeum vulgare L.) using CRISPR/Cas9 and TALENs

    DEFF Research Database (Denmark)

    Holme, Inger B; Wendt, Toni; Gil-Humanes, Javier

    2017-01-01

    In the present study, we utilized TALEN- and CRISPR/Cas9-induced mutations to analyze the promoter of the barley phytase gene HvPAPhy_a. The purpose of the study was dual, validation of the PAPhy_a enzyme as the main contributor of the mature grain phytase activity (MGPA), as well as validating...

  12. Gas Transport Through Channels

    Science.gov (United States)

    2009-03-25

    HvPlP2;l increases internal CO; conductance and CO; assimilation in the leaves of transgenic rice plants. Plant Cell Physiol. 45, 521 529. Harris...human Rhesus-associated RhAG protein and a kidney homologue promote ammonium transport in yeast . Nat Genet 26 341-344 42. Payne JA, Forbush B (1994

  13. Characterization of H/V Spectral Ratios for the Assessment of Slope Stability in the Gas Hydrate-rich Area: an Example from Offshore SW Taiwan

    Science.gov (United States)

    Lin, J. Y.; Tsia, C. H.; Cheng, W. B.; Chin, S. J.; Lin, S. S.; Liang, C. W.

    2015-12-01

    The Nakamura's method, which calculates the ratios between horizontal and vertical component spectra of seismic signals (H/V), is widely used in the inland area. However, few related estimations were performed for the offshore area and little knowledge for the marine sediments were obtained. From 2013 to 2015, three passive ocean bottom seismometer (OBS) experiments were conducted in gas hydrate-rich area offshore SW Taiwan in the aim of acquiring information related to the physical properties of seafloor sediments. The H/V of the seafloor sediments in the three areas were estimated by using the ambient noise and seismic signal recorded by OBSs. The resonance frequency of each site was estimated from the main peak of H/V distribution and a range between 5 and 10 Hz were obtained. Based on the empirical law, this resonance frequency range should correspond to a sediment thickness of approximately several to ten of meters. This estimation is consistent with the thickness of the sedimentary cover imaged by chirp sonar survey, suggesting that the site response of seafloor is dominantly controlled by the unconsolidated sedimentary layer on the top of the sea bed. Remarkably, the H/V ratios obtained in our study area are much larger than that calculated for the inland areas. The magnification can reach as high as 50 to more than 100. This observation infers that the sea water movement might emphasize the horizontal motion of the marine sediments, which is crucial for the slope stability assessment. Moreover, for most stations located in the active margin, no distinct peak is observed for the H/V pattern calculated during earthquakes. However, in the passive margin, the H/V peak calculated from ambient noise and earthquakes is mostly identical. This phenomenon may suggest that relatively unclear sedimentary boundary exist in the active margin environment. Estimating H/V spectral ratios of data recorded by the OBSs deployed in the southwest Taiwan offshore area offers a

  14. A voltage-gated H+ channel underlying pH homeostasis in calcifying coccolithophores.

    Directory of Open Access Journals (Sweden)

    Alison R Taylor

    2011-06-01

    Full Text Available Marine coccolithophorid phytoplankton are major producers of biogenic calcite, playing a significant role in the global carbon cycle. Predicting the impacts of ocean acidification on coccolithophore calcification has received much recent attention and requires improved knowledge of cellular calcification mechanisms. Uniquely amongst calcifying organisms, coccolithophores produce calcified scales (coccoliths in an intracellular compartment and secrete them to the cell surface, requiring large transcellular ionic fluxes to support calcification. In particular, intracellular calcite precipitation using HCO₃⁻ as the substrate generates equimolar quantities of H+ that must be rapidly removed to prevent cytoplasmic acidification. We have used electrophysiological approaches to identify a plasma membrane voltage-gated H+ conductance in Coccolithus pelagicus ssp braarudii with remarkably similar biophysical and functional properties to those found in metazoans. We show that both C. pelagicus and Emiliania huxleyi possess homologues of metazoan H(v1 H+ channels, which function as voltage-gated H+ channels when expressed in heterologous systems. Homologues of the coccolithophore H+ channels were also identified in a diversity of eukaryotes, suggesting a wide range of cellular roles for the H(v1 class of proteins. Using single cell imaging, we demonstrate that the coccolithophore H+ conductance mediates rapid H+ efflux and plays an important role in pH homeostasis in calcifying cells. The results demonstrate a novel cellular role for voltage gated H+ channels and provide mechanistic insight into biomineralisation by establishing a direct link between pH homeostasis and calcification. As the coccolithophore H+ conductance is dependent on the trans-membrane H+ electrochemical gradient, this mechanism will be directly impacted by, and may underlie adaptation to, ocean acidification. The presence of this H+ efflux pathway suggests that there is no obligate

  15. Comparative analysis of replication characteristics of BoHV-1 subtypes in bovine respiratory and genital mucosa explants: a phylogenetic enlightenment

    Directory of Open Access Journals (Sweden)

    Steukers Lennert

    2011-02-01

    Full Text Available Abstract In general, members of the Alphaherpesvirinae use the epithelium of the upper respiratory and/or genital tract as a preferential site for primary replication. Bovine herpesvirus type 1 (BoHV-1 may replicate at both sites and cause two major clinical entities designated as infectious bovine rhinotracheitis (IBR and infectious pustular vulvovaginitis/balanoposthitis (IPV/IPB in cattle. It has been hypothesized that subtype 1.1 invades preferentially the upper respiratory mucosa whereas subtype 1.2 favors replication at the peripheral genital tract. However, some studies are in contrast with this hypothesis. A thorough study of primary replication at both mucosae could elucidate whether or not different BoHV-1 subtypes show differences in mucosa tropism. We established bovine respiratory and genital organ cultures with emphasis on maintenance of tissue morphology and viability during in vitro culture. In a next step, bovine respiratory and genital mucosa explants of the same animals were inoculated with several BoHV-1 subtypes. A quantitative analysis of viral invasion in the mucosa was performed at 0 h, 24 h, 48 h and 72 h post inoculation (pi by measuring plaque latitude and penetration depth underneath the basement membrane. All BoHV-1 subtypes exhibited a more profound invasion capacity in respiratory tissue compared to that in genital tissue at 24 h pi. However, at 24 h pi plaque latitude was found to be larger in genital tissue compared to respiratory tissue and this for all subtypes. These similar findings among the different subtypes take the edge off the belief of the existence of specific mucosa tropisms of different BoHV-1 subtypes.

  16. Knockdown of WHIRLY1 Affects Drought Stress-Induced Leaf Senescence and Histone Modifications of the Senescence-Associated Gene HvS40

    Directory of Open Access Journals (Sweden)

    Bianka Janack

    2016-09-01

    Full Text Available The plastid-nucleus located protein WHIRLY1 has been described as an upstream regulator of leaf senescence, binding to the promoter of senescence-associated genes like HvS40. To investigate the impact of WHIRLY1 on drought stress-induced, premature senescence, transgenic barley plants with an RNAi-mediated knockdown of the HvWHIRLY1 gene were grown under normal and drought stress conditions. The course of leaf senescence in these lines was monitored by physiological parameters and studies on the expression of senescence- and drought stress-related genes. Drought treatment accelerated leaf senescence in WT plants, whereas WHIRLY 1 knockdown lines (RNAi-W1 showed a stay-green phenotype. Expression of both senescence-associated and drought stress-responsive genes, was delayed in the transgenic plants. Notably, expression of transcription factors of the WRKY and NAC families, which are known to function in senescence- and stress-related signaling pathways, was affected in plants with impaired accumulation of WHIRLY1, indicating that WHIRLY1 acts as an upstream regulator of drought stress-induced senescence. To reveal the epigenetic indexing of HvS40 at the onset of drought-induced senescence in WT and RNAi-W1 lines, stress-responsive loading with histone modifications of promoter and coding sequences of HvS40 was analyzed by chromatin immunoprecipitation and quantified by qRT-PCR. In the wildtype, the euchromatic mark H3K9ac of the HvS40 gene was low under control conditions and was established in response to drought treatment, indicating the action of epigenetic mechanisms in response to drought stress. However, drought stress caused no significant increase in H3K9ac in plants impaired in accumulation of WHIRLY1. The results show that WHIRLY1 knockdown sets in motion a delay in senescence that involves all aspects of gene expression, including changes in chromatin structure.

  17. Herpesvírus bovinos (BoHV-1.1 e BoHV-1.2b em forma infecciosa em encéfalos de bovinos submetidos ao diagnóstico de raiva no estado do Rio Grande do Sul

    Directory of Open Access Journals (Sweden)

    H.B.C.R. Batista

    2010-10-01

    Full Text Available Verificou-se a incidência de herpesvírus bovinos (BoHVs em encéfalos de bovinos submetidos ao diagnóstico de raiva no estado do Rio Grande do Sul. Para tanto, amostras coletadas durante dois anos (n=70 foram submetidas ao isolamento viral em cultivos celulares. Os BoHVs foram isolados em dois (2,9% encéfalos. Após serem submetidas à caracterização antigênica e molecular, as amostras foram subtipadas como BoHV-1.1 e BoHV-1.2b. A BoHV-1.1 foi isolada de um encéfalo que foi também positivo para raiva. O vírus da raiva foi identificado em 11 amostras (15,7%. Estes achados revelam que a incidência de BoHVs em forma infecciosa em bovinos com encefalite foi baixa, embora represente 16,7% (2/12 dos encéfalos nos quais um agente viral foi identificado. Tal fato confirma a já reportada associação entre BoHV-1 e encefalites. Esse é o primeiro relato da ocorrência de BoHV-1.2b, um subtipo considerado menos patogênico, em um caso de doença neurológica em bovinos.

  18. A low on-resistance buried current path SOI p-channel LDMOS compatible with n-channel LDMOS

    Institute of Scientific and Technical Information of China (English)

    Zhou Kun; Luo Xiao-Rong; Fan Yuan-Hang; Luo Yin-Chun; Hu Xia-Rong; Zhang Bo

    2013-01-01

    A novel low specific on-resistance (Ron,sp) silicon-on-insulator (SOI) p-channel lateral double-diffused metal-oxide semiconductor (pLDMOS) compatible with high voltage (HV) n-channel LDMOS (nLDMOS) is proposed.The pLDMOS is built in the N-type SOI layer with a buried P-type layer acting as a current conduction path in the on-state (BP SOI pLDMOS).Its superior compatibility with the HV nLDMOS and low voltage (LV) complementary metal-oxide semiconductor (CMOS) circuitry which are formed on the N-SOI layer can be obtained.In the off-state the P-buried layer built in the N-SOI layer causes multiple depletion and electric field reshaping,leading to an enhanced (reduced) surface field (RESURF)effect.The proposed BP SOI pLDMOS achieves not only an improved breakdown voltage (BV) but also a significantly reduced Ron,sp.The BV of the BP SOI pLDMOS increases to 319 V from 215 V of the conventional SOI pLDMOS at the same half cell pitch of 25 μm,and Ron,sp decreases from 157 mΩ·cm2 to 55 mΩ·cm2.Compared with the PW SOI pLDMOS,the BP SOI pLDMOS also reduces the Ron,sp by 34% with almost the same BV.

  19. Isolation and characterization of bovine herpesvirus 4 (BoHV-4 from a cow affected by post partum metritis and cloning of the genome as a bacterial artificial chromosome

    Directory of Open Access Journals (Sweden)

    Cavirani Sandro

    2009-08-01

    Full Text Available Abstract Background Bovine herpesvirus 4 (BoHV-4 is a gammaherpesvirus with a Worldwide distribution in cattle and is often isolated from the uterus of animals with postpartum metritis or pelvic inflammatory disease. Virus strain adaptation to an organ, tissue or cell type is an important issue for the pathogenesis of disease. To explore the mechanistic role of viral strain variation for uterine disease, the present study aimed to develop a tool enabling precise genetic discrimination between strains of BoHV-4 and to easily manipulate the viral genome. Methods A strain of BoHV-4 was isolated from the uterus of a persistently infected cow and designated BoHV-4-U. The authenticity of the isolate was confirmed by RFLP-PCR and sequencing using the TK and IE2 loci as genetic marker regions for the BoHV-4 genome. The isolated genome was cloned as a Bacterial Artificial Chromosome (BAC and manipulated through recombineering technology Results The BoHV-4-U genome was successfully cloned as a BAC, and the stability of the pBAC-BoHV-4-U clone was confirmed over twenty passages, with viral growth similar to the wild type virus. The feasibility of using BoHV-4-U for mutagenesis was demonstrated using the BAC recombineering system. Conclusion The analysis of genome strain variation is a key method for investigating genes associated with disease. A resource for dissection of the interactions between BoHV-4 and host endometrial cells was generated by cloning the genome of BoHV-4 as a BAC.

  20. Positron Channeling

    CERN Document Server

    Badikyan, Karen

    2016-01-01

    The possibility of channeling the low-energy relativistic positrons around separate crystallographic axes with coaxial symmetry of negative ions in some types of crystals is shown. The process of annihilation of positrons with electrons of medium was studied in detail.

  1. Brands & Channels

    Institute of Scientific and Technical Information of China (English)

    Alice Yang

    2009-01-01

    @@ "Brands" and "Channels" are the two most important things in Ku-Hai Chen's eyes when doing business with Main-land China. Ku-Hai Chen, Executive Director of the International Trade Institute of Taiwan External Trade Development Council (TAITRA), flies frequently between Chinese Taipei and Mainland China, and was in Beijing earlier this month for his seminar.

  2. A Support Vector Machine Approach for Truncated Fingerprint Image Detection from Sweeping Fingerprint Sensors

    Directory of Open Access Journals (Sweden)

    Chi-Jim Chen

    2015-03-01

    Full Text Available A sweeping fingerprint sensor converts fingerprints on a row by row basis through image reconstruction techniques. However, a built fingerprint image might appear to be truncated and distorted when the finger was swept across a fingerprint sensor at a non-linear speed. If the truncated fingerprint images were enrolled as reference targets and collected by any automated fingerprint identification system (AFIS, successful prediction rates for fingerprint matching applications would be decreased significantly. In this paper, a novel and effective methodology with low time computational complexity was developed for detecting truncated fingerprints in a real time manner. Several filtering rules were implemented to validate existences of truncated fingerprints. In addition, a machine learning method of supported vector machine (SVM, based on the principle of structural risk minimization, was applied to reject pseudo truncated fingerprints containing similar characteristics of truncated ones. The experimental result has shown that an accuracy rate of 90.7% was achieved by successfully identifying truncated fingerprint images from testing images before AFIS enrollment procedures. The proposed effective and efficient methodology can be extensively applied to all existing fingerprint matching systems as a preliminary quality control prior to construction of fingerprint templates.

  3. A Support Vector Machine Approach for Truncated Fingerprint Image Detection from Sweeping Fingerprint Sensors

    Science.gov (United States)

    Chen, Chi-Jim; Pai, Tun-Wen; Cheng, Mox

    2015-01-01

    A sweeping fingerprint sensor converts fingerprints on a row by row basis through image reconstruction techniques. However, a built fingerprint image might appear to be truncated and distorted when the finger was swept across a fingerprint sensor at a non-linear speed. If the truncated fingerprint images were enrolled as reference targets and collected by any automated fingerprint identification system (AFIS), successful prediction rates for fingerprint matching applications would be decreased significantly. In this paper, a novel and effective methodology with low time computational complexity was developed for detecting truncated fingerprints in a real time manner. Several filtering rules were implemented to validate existences of truncated fingerprints. In addition, a machine learning method of supported vector machine (SVM), based on the principle of structural risk minimization, was applied to reject pseudo truncated fingerprints containing similar characteristics of truncated ones. The experimental result has shown that an accuracy rate of 90.7% was achieved by successfully identifying truncated fingerprint images from testing images before AFIS enrollment procedures. The proposed effective and efficient methodology can be extensively applied to all existing fingerprint matching systems as a preliminary quality control prior to construction of fingerprint templates. PMID:25835186

  4. Cloning of a C-terminally truncated NK-1 receptor from guinea-pig nervous system.

    Science.gov (United States)

    Baker, Sarah J; Morris, Judy L; Gibbins, Ian L

    2003-03-17

    In order to examine the possibility that some actions of substance P may be mediated by a variant of the neurokinin-1 (NK-1) receptor, we isolated and sequenced the cDNA encoding a truncated NK-1 receptor from guinea-pig celiac ganglion and brain mRNA by two-step RT-PCR based on the 3'RACE method. The truncated NK-1 receptor sequence corresponded to a splice variant missing the final exon 5, and encoded a 311-amino acid protein that was truncated just after transmembrane domain 7, in an identical position to a truncated variant of the human NK-1 receptor. Thus, the truncated NK-1 receptor lacked the intracellular C-terminus sequence required for the phosphorylation and internalisation of the full-length NK-1 receptor. Using a sensitive one-step semi-quantitative RT-PCR assay, we detected mRNA for both the full length and truncated NK-1 receptors throughout the brain, spinal cord, sensory and autonomic ganglia, and viscera. Truncated NK-1 receptor mRNA was present in lower quantities than mRNA for the full-length NK-1R in all tissues. Highest levels of mRNA for the truncated NK-1 receptor were detected in coeliac ganglion, spinal cord, basal ganglia and hypothalamus. An antiserum to the N-terminus of the NK-1 receptor labelled dendrites of coeliac ganglion neurons that were not labelled with antisera to the C-terminus of the full length NK-1 receptor. These results show that a C-terminally truncated variant of the NK-1 receptor is likely to be widespread in central and peripheral nervous tissue. We predict that this receptor will mediate actions of substance P on neurons where immunohistochemical evidence for a full-length NK-1 receptor is lacking.

  5. Channel Power in Multi-Channel Environments

    NARCIS (Netherlands)

    M.G. Dekimpe (Marnik); B. Skiera (Bernd)

    2004-01-01

    textabstractIn the literature, little attention has been paid to instances where companies add an Internet channel to their direct channel portfolio. However, actively managing multiple sales channels requires knowing the customers’ channel preferences and the resulting channel power. Two key compon

  6. Channel Power in Multi-Channel Environments

    NARCIS (Netherlands)

    M.G. Dekimpe (Marnik); B. Skiera (Bernd)

    2004-01-01

    textabstractIn the literature, little attention has been paid to instances where companies add an Internet channel to their direct channel portfolio. However, actively managing multiple sales channels requires knowing the customers’ channel preferences and the resulting channel power. Two key

  7. Modelling Sediment Thickness for Site-Effect Characterisation using H/V Spectral Ratio Analysis and Electrical Resistivity Tomography

    Science.gov (United States)

    Van Noten, Koen; Lecocq, Thomas; Watlet, Arnaud; Camelbeeck, Thierry

    2014-05-01

    The H/V Spectral Ratio (HVSR) analysis of ambient seismic noise has been widely used to estimate the fundamental site resonance frequency in the context of site-effect characterisation. In regions of unknown subsurface structure, in which there is a significant acoustic impedance contrast between sediments and the underlying bedrock, HVSR can be a very powerful tool to map bedrock morphology and sediment thickness. Calibrating the power-law relationship between the variation in fundamental frequency and sediment thickness around these unknown sites is crucial for sediment thickness mapping. This empirical relationship can be easily calculated by conducting HVSR analysis of ambient noise measurements above boreholes with known bedrock depth. Additional local H/V measurements above near-surface geophysical profiles, for instance created by Electrical Resistivity Tomography (ERT), allow training and improving the power-law relationship for sites with a shallow bedrock depth. As the compaction of sediments influences the Vs, one has however to take into account that this empirical relationship can only be applied in relative small areas with a similar local geology. Between 2008 and 2010, a seismic swarm (MLmax = 3.2) occurred in a hilly area, 20 km SE of Brussels (Belgium). 60 of the 300 recorded events were felt/heard by the local residents and were reported in the corresponding 'Did You Feel It' internet inquiries held by Royal Observatory of Belgium. Several low-magnitude events show a distinct macroseismic intensity variation that can be explained by the geological site effect, i.e. the local sediment thickness, affecting the human perception of these earthquake-induced ground motions. In this presentation, we apply the above described methodology and discuss the results of a geophysical survey including ERT-profiling, ambient noise recording, HVSR analysis in Geopsy and DEM-modelling to characterise the local site effects. The resulting sediment thickness model

  8. Seismic microzonation and velocity models of El Ejido area (SE Spain) from the diffuse-field H/V method

    Science.gov (United States)

    García-Jerez, Antonio; Seivane, Helena; Navarro, Manuel; Piña-Flores, José; Luzón, Francisco; Vidal, Francisco; Posadas, Antonio M.; Aranda, Carolina

    2016-04-01

    El Ejido town is located in the Campo de Dalías coastal plain (Almería province, SE Spain), emplaced in one of the most seismically active regions of Spain. The municipality has 84000 inhabitants and presented a high growth rate during the last twenty years. The most recent intense seismic activity occurred close to this town was in 1993 and 1994, with events of Mb = 4.9 and Mb = 5.0, respectively. To provide a basis for site-specific hazard analysis, we first carried out a seismic microzonation of this town in terms of predominant periods and geotechnical properties. The predominant periods map was obtained from ambient noise observations on a grid of 250 x 250 m in the main urban area, and sparser measurements on the outskirts. These broad-band records, of about 20 minutes long each, were analyzed by using the horizontal-to-vertical spectral ratio technique (H/V). Dispersion curves obtained from two array measurements of ambient noise and borehole data provided additional geophysical information. All the surveyed points in the town were found to have relatively long predominant periods ranging from 0.8 to 2.3 s and growing towards the SE. Secondary high-frequency (> 2Hz) peaks were found at about the 10% of the points only. On the other hand, Vs30 values of 550 - 650 m/s were estimated from the array records, corresponding to cemented sediments and medium-hard rocks. The local S-wave velocity structure has been inverted from the H/V curves for a subset of the measurement sites. We used an innovative full-wavefield method based on the diffuse-wavefield approximation (Sánchez-Sesma et al., 2011) combined with the simulated annealing algorithm. Shallow seismic velocities and deep boreholes data were used as constraints. The results show that the low-frequency resonances are related with the impedance contrast between several hundred meters of medium-hard sedimentary rocks (marls and calcarenites) with the stiffer basement of the basin, which dips to the SE. These

  9. A Line Search Multilevel Truncated Newton Algorithm for Computing the Optical Flow

    Directory of Open Access Journals (Sweden)

    Lluís Garrido

    2015-06-01

    Full Text Available We describe the implementation details and give the experimental results of three optimization algorithms for dense optical flow computation. In particular, using a line search strategy, we evaluate the performance of the unilevel truncated Newton method (LSTN, a multiresolution truncated Newton (MR/LSTN and a full multigrid truncated Newton (FMG/LSTN. We use three image sequences and four models of optical flow for performance evaluation. The FMG/LSTN algorithm is shown to lead to better optical flow estimation with less computational work than both the LSTN and MR/LSTN algorithms.

  10. Nonlinear channelizer

    Science.gov (United States)

    In, Visarath; Longhini, Patrick; Kho, Andy; Neff, Joseph D.; Leung, Daniel; Liu, Norman; Meadows, Brian K.; Gordon, Frank; Bulsara, Adi R.; Palacios, Antonio

    2012-12-01

    The nonlinear channelizer is an integrated circuit made up of large parallel arrays of analog nonlinear oscillators, which, collectively, serve as a broad-spectrum analyzer with the ability to receive complex signals containing multiple frequencies and instantaneously lock-on or respond to a received signal in a few oscillation cycles. The concept is based on the generation of internal oscillations in coupled nonlinear systems that do not normally oscillate in the absence of coupling. In particular, the system consists of unidirectionally coupled bistable nonlinear elements, where the frequency and other dynamical characteristics of the emergent oscillations depend on the system's internal parameters and the received signal. These properties and characteristics are being employed to develop a system capable of locking onto any arbitrary input radio frequency signal. The system is efficient by eliminating the need for high-speed, high-accuracy analog-to-digital converters, and compact by making use of nonlinear coupled systems to act as a channelizer (frequency binning and channeling), a low noise amplifier, and a frequency down-converter in a single step which, in turn, will reduce the size, weight, power, and cost of the entire communication system. This paper covers the theory, numerical simulations, and some engineering details that validate the concept at the frequency band of 1-4 GHz.

  11. Measurement of Ballooning Gap Size of Irradiated Fuels Using Neutron Radiography Transfer Method and HV Image Filter

    Energy Technology Data Exchange (ETDEWEB)

    Sim, Cheul Muu; Kim, Tae Joo; Oh, Hwa Suk [Korea Atomic Energy Research Institute, Daejeon (Korea, Republic of); Kim, Joon Cheol [Seonam University, Namwon (Korea, Republic of)

    2013-04-15

    A transfer method of neutron radiography was developed to measure the size of the end plug and a gap of an intact K102L-2, the irradiated fuel of a ballooned K174L-3, a ballooned and ruptured K98L-3. A typical irradiation time of 25 min. was determined to obtain a film density of between 2 and 3 of SR X-ray film with neutrons of 1.5x10{sup 11}n{center_dot}cm{sup -2}. To validate and calibrate the results, a RISO fuel standard sample, Cd plate and ASTM-BPI/SI were used. An activated latent image formed in the 100 {mu}m Dy foil was subsequently transferred in a dark room for more than 8 hours to the SR film which is a maximum of three half-lives. Due to the L/D ratio an unsharpness of 9.82-14{mu}m and a magnification of 1.0003 were given. After digitizing an image of SR film, the ballooning gap of the plug was discernible by an H/V filter of image processing. The gap size of the ballooned element, K174L-3, is equal to or greater than 1.2 mm. The development of a transfer method played a pivotal role in developing high burn-up of Wolsung and PWR nuclear fuel type.

  12. Radiation-hard Active Pixel Sensors for HL-LHC Detector Upgrades based on HV-CMOS Technology

    CERN Document Server

    Miucci, A; Hemperek, T.; Hügging, F.; Krüger, H.; Obermann, T.; Wermes, N.; Garcia-Sciveres, M.; Backhaus, M.; Capeans, M.; Feigl, S.; Nessi, M.; Pernegger, H.; Ristic, B.; Gonzalez-Sevilla, S.; Ferrere, D.; Iacobucci, G.; Rosa, A.La; Muenstermann, D.; George, M.; Grosse-Knetter, J.; Quadt, A.; Rieger, J.; Weingarten, J.; Bates, R.; Blue, A.; Buttar, C.; Hynds, D.; Kreidl, C.; Peric, I.; Breugnon, P.; Pangaud, P.; Godiot-Basolo, S.; Fougeron, D.; Bompard, F.; Clemens, J.C.; Liu, J; Barbero, M.; Rozanov, A

    2014-01-01

    Luminosity upgrades are discussed for the LHC (HL-LHC) which would make updates to the detectors necessary, requiring in particular new, even more radiation-hard and granular, sensors for the inner detector region. 1Corresponding author. c CERN 2014, published under the terms of the Creative Commons Attribution 3.0 License by IOP Publishing Ltd and Sissa Medialab srl. Any further distribution of this work must maintain attribution to the author(s) and the published article’s title, journal citation and DOI. doi:10.1088/1748-0221/9/05/C050642014 JINST 9 C05064 A proposal for the next generation of inner detectors is based on HV-CMOS: a new family of silicon sensors based on commercial high-voltage CMOS technology, which enables the fabrication of part of the pixel electronics inside the silicon substrate itself. The main advantages of this technology with respect to the standard silicon sensor technology are: low material budget, fast charge collection time, high radiation tolerance, low cost and operation a...

  13. A computer code for forward calculation and inversion of the H/V spectral ratio under the diffuse field assumption

    Science.gov (United States)

    García-Jerez, Antonio; Piña-Flores, José; Sánchez-Sesma, Francisco J.; Luzón, Francisco; Perton, Mathieu

    2016-12-01

    During a quarter of a century, the main characteristics of the horizontal-to-vertical spectral ratio of ambient noise HVSRN have been extensively used for site effect assessment. In spite of the uncertainties about the optimum theoretical model to describe these observations, over the last decade several schemes for inversion of the full HVSRN curve for near surface surveying have been developed. In this work, a computer code for forward calculation of H/V spectra based on the diffuse field assumption (DFA) is presented and tested. It takes advantage of the recently stated connection between the HVSRN and the elastodynamic Green's function which arises from the ambient noise interferometry theory. The algorithm allows for (1) a natural calculation of the Green's functions imaginary parts by using suitable contour integrals in the complex wavenumber plane, and (2) separate calculation of the contributions of Rayleigh, Love, P-SV and SH waves as well. The stability of the algorithm at high frequencies is preserved by means of an adaptation of the Wang's orthonormalization method to the calculation of dispersion curves, surface-waves medium responses and contributions of body waves. This code has been combined with a variety of inversion methods to make up a powerful tool for passive seismic surveying.

  14. A computer code for forward calculation and inversion of the H/V spectral ratio under the diffuse field assumption

    CERN Document Server

    García-Jerez, Antonio; Sánchez-Sesma, Francisco J; Luzón, Francisco; Perton, Mathieu

    2016-01-01

    During a quarter of a century, the main characteristics of the horizontal-to-vertical spectral ratio of ambient noise HVSRN have been extensively used for site effect assessment. In spite of the uncertainties about the optimum theoretical model to describe these observations, several schemes for inversion of the full HVSRN curve for near surface surveying have been developed over the last decade. In this work, a computer code for forward calculation of H/V spectra based on the diffuse field assumption (DFA) is presented and tested.It takes advantage of the recently stated connection between the HVSRN and the elastodynamic Green's function which arises from the ambient noise interferometry theory. The algorithm allows for (1) a natural calculation of the Green's functions imaginary parts by using suitable contour integrals in the complex wavenumber plane, and (2) separate calculation of the contributions of Rayleigh, Love, P-SV and SH waves as well. The stability of the algorithm at high frequencies is preserv...

  15. Truncated Hexa-Octahedral Magnetites: Biosignatures in Terrestrial Samples and Martian Meteorite ALH84001

    Science.gov (United States)

    Thomas-Keprta, Kathie L.; Clemett, Simon J.; Bazylinski, Dennis A.; Kirschvink, Joseph L.; McKay, David S.; Wentworth, Susan J.; Vali, H.; Gibson, Everett K.

    2001-01-01

    We suggest that the observation of truncated hexa-octahedral magnetites in ALH84001 are both consistent with, and in the absence of terrestrial inorganic analogs, likely formed by biogenic processes. Additional information is contained in the original extended abstract.

  16. Electro-oxidation of Formic Acid on Carbon Supported Edge-Truncated Cubic Platinum Nanoparticles Catalysts

    Institute of Scientific and Technical Information of China (English)

    LI She-Qiang; FU Xing-Qiu; HU Bing; DENG Jia-Jun; CHEN Lei

    2009-01-01

    The oxidation of formic acid on edge-truncated cubic platinum nanoparticles/C catalysts is investigated. X-ray photoelectron spectroscopy analysis indicates that the surface of edge-truncated cubic platinum nanoparticles is composed of two types of coordination sites. The oxidation behavior of formic acid on edge-truncated cubic platinum nanoparticles/C is investigated using cyclic voltammetry. The apparent activation energies are found to be 54.2, 55.0, 61.8, 69.5, 71.9, 69.26, 65.28kJ/mol at 0.15, 0.3, 0.4, 0.5, 0.6, 0.65, 0.7 V, respectively. A specific surface area activity of 1.76mA·cm~(-2) at 0.4 V indicates that the edge-truncated cubic Platinum nanoparticles are a promising anode catalyst for direct formic acid fuel cells.

  17. Consistent and inconsistent truncations. General results and the issue of the correct uplifting of solutions

    CERN Document Server

    Pons, J M; Pons, Josep M.; Talavera, Pere

    2004-01-01

    We clarify the existence of two different types of truncations of the field content in a theory, the consistency of each type being achieved by different means. A proof is given of the conditions to have a consistent truncation in the case of dimensional reductions induced by independent Killing vectors. We explain in what sense the tracelessness condition found by Scherk and Scharwz is not only a necessary condition but also a {\\it sufficient} one for a consistent truncation. The reduction of the gauge group is fully performed showing the existence of a sector of rigid symmetries. We show that truncations originated by the introduction of constraints will in general be inconsistent, but this fact does not prevent the possibility of correct upliftings of solutions in some cases. The presence of constraints has dynamical consequences that turn out to play a fundamental role in the correctness of the uplifting procedure.

  18. A Heuristic Approach for Treating Pathologies of Truncated Sum Rules in Limit Theory of Nonlinear Susceptibilities

    CERN Document Server

    Kuzyk, Mark G

    2014-01-01

    The Thomas Kuhn Reich sum rules and the sum-over-states (SOS) expression for the hyperpolarizabilities are truncated when calculating the fundamental limits of nonlinear susceptibilities. Truncation of the SOS expression can lead to an accurate approximation of the first and second hyperpolarizabilities due to energy denominators, which can make the truncated series converge to within 10% of the full series after only a few excited states are included in the sum. The terms in the sum rule series, however, are weighted by the state energies, so convergence of the series requires that the position matrix elements scale at most in inverse proportion to the square root of the energy. Even if the convergence condition is met, serious pathologies arise, including self inconsistent sum rules and equations that contradict reality. As a result, using the truncated sum rules alone leads to pathologies that make any rigorous calculations impossible, let alone yielding even good approximations. This paper discusses condi...

  19. UNIQUENESS PROBLEM FOR MEROMORPHIC MAPPINGS IN SEVERAL COMPLEX VARIABLES INTO PN(C) WITH TRUNCATED MULTIPLICITIES

    Institute of Scientific and Technical Information of China (English)

    Zhenhan TU; Zhonghua WANG

    2013-01-01

    This paper proves some uniqueness theorems for meromorphic mappings in several complex variables into the complex projective space PN(C) with truncated multiplicities,and our results improve some earlier work.

  20. truncSP: An R Package for Estimation of Semi-Parametric Truncated Linear Regression Models

    Directory of Open Access Journals (Sweden)

    Maria Karlsson

    2014-05-01

    Full Text Available Problems with truncated data occur in many areas, complicating estimation and inference. Regarding linear regression models, the ordinary least squares estimator is inconsistent and biased for these types of data and is therefore unsuitable for use. Alternative estimators, designed for the estimation of truncated regression models, have been developed. This paper presents the R package truncSP. The package contains functions for the estimation of semi-parametric truncated linear regression models using three different estimators: the symmetrically trimmed least squares, quadratic mode, and left truncated estimators, all of which have been shown to have good asymptotic and ?nite sample properties. The package also provides functions for the analysis of the estimated models. Data from the environmental sciences are used to illustrate the functions in the package.

  1. Propagation of a general-type beam through a truncated fractional Fourier transform optical system.

    Science.gov (United States)

    Zhao, Chengliang; Cai, Yangjian

    2010-03-01

    Paraxial propagation of a general-type beam through a truncated fractional Fourier transform (FRT) optical system is investigated. Analytical formulas for the electric field and effective beam width of a general-type beam in the FRT plane are derived based on the Collins formula. Our formulas can be used to study the propagation of a variety of laser beams--such as Gaussian, cos-Gaussian, cosh-Gaussian, sine-Gaussian, sinh-Gaussian, flat-topped, Hermite-cosh-Gaussian, Hermite-sine-Gaussian, higher-order annular Gaussian, Hermite-sinh-Gaussian and Hermite-cos-Gaussian beams--through a FRT optical system with or without truncation. The propagation properties of a Hermite-cos-Gaussian beam passing through a rectangularly truncated FRT optical system are studied as a numerical example. Our results clearly show that the truncated FRT optical system provides a convenient way for laser beam shaping.

  2. Impact of degree truncation on the spread of a contagious process on networks

    CERN Document Server

    Harling, Guy

    2016-01-01

    Understanding how person-to-person contagious processes spread through a population requires accurate information on connections between population members. However, such connectivity data, when collected via interview, is often incomplete due to partial recall, respondent fatigue or study design, e.g., fixed choice designs (FCD) truncate out-degree by limiting the number of contacts each respondent can report. Past research has shown how FCD truncation affects network properties, but its implications for predicted speed and size of spreading processes remain largely unexplored. To study the impact of degree truncation on spreading processes, we generated collections of synthetic networks containing specific properties (degree distribution, degree-assortativity, clustering), and also used empirical social network data from 75 villages in Karnataka, India. We simulated FCD using various truncation thresholds and ran a susceptible-infectious-recovered (SIR) process on each network. We found that spreading proce...

  3. A protein-truncating R179X variant in RNF186 confers protection against ulcerative colitis

    Science.gov (United States)

    Rivas, Manuel A.; Graham, Daniel; Sulem, Patrick; Stevens, Christine; Desch, A. Nicole; Goyette, Philippe; Gudbjartsson, Daniel; Jonsdottir, Ingileif; Thorsteinsdottir, Unnur; Degenhardt, Frauke; Mucha, Sören; Kurki, Mitja I.; Li, Dalin; D'Amato, Mauro; Annese, Vito; Vermeire, Severine; Weersma, Rinse K.; Halfvarson, Jonas; Paavola-Sakki, Paulina; Lappalainen, Maarit; Lek, Monkol; Cummings, Beryl; Tukiainen, Taru; Haritunians, Talin; Halme, Leena; Koskinen, Lotta L. E.; Ananthakrishnan, Ashwin N.; Luo, Yang; Heap, Graham A.; Visschedijk, Marijn C.; Barrett, J; de Lange, K; Edwards, C; Hart, A; Hawkey, C; Jostins, L; Kennedy, N; Lamb, C; Lee, J; Lees, C; Mansfield, J; Mathew, C; Mowatt, C; Newman, W; Nimmo, E; Parkes, M; Pollard, M; Prescott, N; Randall, J; Rice, D; Satsangi, J; Simmons, A; Tremelling, M; Uhlig, H; Wilson, D; Abraham, C; Achkar, J.P; Bitton, A; Boucher, G; Croitoru, K; Fleshner, P; Glas, J; Kugathasan, S; Limbergen, J.V; Milgrom, R; Proctor, D; Regueiro, M; Schumm, P.L; Sharma, Y; Stempak, J.M; Targan, S.R; Wang, M.H; MacArthur, Daniel G.; Neale, Benjamin M.; Ahmad, Tariq; Anderson, Carl A.; Brant, Steven R.; Duerr, Richard H.; Silverberg, Mark S.; Cho, Judy H; Palotie, Aarno; Saavalainen, Päivi; Kontula, Kimmo; Färkkilä, Martti; McGovern, Dermot P. B.; Franke, Andre; Stefansson, Kari; Rioux, John D.; Xavier, Ramnik J.; Daly, Mark J.; Barrett, J.; de Lane, K.; Edwards, C.; Hart, A.; Hawkey, C.; Jostins, L.; Kennedy, N.; Lamb, C.; Lee, J.; Lees, C.; Mansfield, J.; Mathew, C.; Mowatt, C.; Newman, B.; Nimmo, E.; Parkes, M.; Pollard, M.; Prescott, N.; Randall, J.; Rice, D.; Satsangi, J.; Simmons, A.; Tremelling, M.; Uhlig, H.; Wilson, D.; Abraham, C.; Achkar, J. P.; Bitton, A.; Boucher, G.; Croitoru, K.; Fleshner, P.; Glas, J.; Kugathasan, S.; Limbergen, J. V.; Milgrom, R.; Proctor, D.; Regueiro, M.; Schumm, P. L.; Sharma, Y.; Stempak, J. M.; Targan, S. R.; Wang, M. H.

    2016-01-01

    Protein-truncating variants protective against human disease provide in vivo validation of therapeutic targets. Here we used targeted sequencing to conduct a search for protein-truncating variants conferring protection against inflammatory bowel disease exploiting knowledge of common variants associated with the same disease. Through replication genotyping and imputation we found that a predicted protein-truncating variant (rs36095412, p.R179X, genotyped in 11,148 ulcerative colitis patients and 295,446 controls, MAF=up to 0.78%) in RNF186, a single-exon ring finger E3 ligase with strong colonic expression, protects against ulcerative colitis (overall P=6.89 × 10−7, odds ratio=0.30). We further demonstrate that the truncated protein exhibits reduced expression and altered subcellular localization, suggesting the protective mechanism may reside in the loss of an interaction or function via mislocalization and/or loss of an essential transmembrane domain. PMID:27503255

  4. State Space Truncation with Quantified Errors for Accurate Solutions to Discrete Chemical Master Equation.

    Science.gov (United States)

    Cao, Youfang; Terebus, Anna; Liang, Jie

    2016-04-01

    The discrete chemical master equation (dCME) provides a general framework for studying stochasticity in mesoscopic reaction networks. Since its direct solution rapidly becomes intractable due to the increasing size of the state space, truncation of the state space is necessary for solving most dCMEs. It is therefore important to assess the consequences of state space truncations so errors can be quantified and minimized. Here we describe a novel method for state space truncation. By partitioning a reaction network into multiple molecular equivalence groups (MEGs), we truncate the state space by limiting the total molecular copy numbers in each MEG. We further describe a theoretical framework for analysis of the truncation error in the steady-state probability landscape using reflecting boundaries. By aggregating the state space based on the usage of a MEG and constructing an aggregated Markov process, we show that the truncation error of a MEG can be asymptotically bounded by the probability of states on the reflecting boundary of the MEG. Furthermore, truncating states of an arbitrary MEG will not undermine the estimated error of truncating any other MEGs. We then provide an overall error estimate for networks with multiple MEGs. To rapidly determine the appropriate size of an arbitrary MEG, we also introduce an a priori method to estimate the upper bound of its truncation error. This a priori estimate can be rapidly computed from reaction rates of the network, without the need of costly trial solutions of the dCME. As examples, we show results of applying our methods to the four stochastic networks of (1) the birth and death model, (2) the single gene expression model, (3) the genetic toggle switch model, and (4) the phage lambda bistable epigenetic switch model. We demonstrate how truncation errors and steady-state probability landscapes can be computed using different sizes of the MEG(s) and how the results validate our theories. Overall, the novel state space

  5. On the scale estimation using truncated swath measurements from low Earth orbiting satellites

    Science.gov (United States)

    Liu, Qi

    2013-05-01

    Truncation effect caused by limited swath width of low Earth orbiting (LEO) satellites results in inevitable underestimation of object scale when using pixel-counting methods. A new approach is proposed to obtain more accurate object scale through truncated measurements. The approach is based upon the mean object area fraction (MOAF), which depicts the relative population of object points in a varying-size domain and proves to be less sensitive to truncation effect. The MOAF-equivalent radius (MER) is deduced by comparing the actual MOAF with the standard one inferred from a circle object. Numerical simulations are implemented to demonstrate the MER characteristics. In contrast to area-equivalent radius (AER) that is merely determined by the absolute amount of object points, MER relies on the overall spatial structure of the object. For objects with irregular shapes, the MER value is generally smaller than AER in the absence of truncation. Nevertheless, taking the actual AER as true scale, MER has significantly reduced biases compared to AER once the object is truncated. This advantage can be reinforced when focusing on size statistics of analogous objects, because negative and positive biases associated with various truncation situations coexist in MER, against the uniform negative biases of AER. When applied to MODIS cloud mask data that are restricted in individual granules, MER has consistently larger values than AER for most truncated clouds. Compared with the explicitly problematic estimation from AER due to truncation, MER offers a notable elevation on the estimated cloud size and gets closer to the truth.

  6. Amplitude reconstruction from complete experiments and truncated partial-wave expansions

    CERN Document Server

    Workman, R L; Wunderlich, Y; Doering, M; Haberzettl, H

    2016-01-01

    We compare the methods of amplitude reconstruction, for a complete experiment and a truncated partial wave analysis, applied to the photoproduction of pseudo-scalar mesons. The approach is pedagogical, showing in detail how the amplitude reconstruction (observables measured at a single energy and angle) is related to a truncated partial-wave analysis (observables measured at a single energy and a number of angles).

  7. Immature truncated O-glycophenotype of cancer directly induces oncogenic features.

    Science.gov (United States)

    Radhakrishnan, Prakash; Dabelsteen, Sally; Madsen, Frey Brus; Francavilla, Chiara; Kopp, Katharina L; Steentoft, Catharina; Vakhrushev, Sergey Y; Olsen, Jesper V; Hansen, Lars; Bennett, Eric P; Woetmann, Anders; Yin, Guangliang; Chen, Longyun; Song, Haiyan; Bak, Mads; Hlady, Ryan A; Peters, Staci L; Opavsky, Rene; Thode, Christenze; Qvortrup, Klaus; Schjoldager, Katrine T-B G; Clausen, Henrik; Hollingsworth, Michael A; Wandall, Hans H

    2014-09-30

    Aberrant expression of immature truncated O-glycans is a characteristic feature observed on virtually all epithelial cancer cells, and a very high frequency is observed in early epithelial premalignant lesions that precede the development of adenocarcinomas. Expression of the truncated O-glycan structures Tn and sialyl-Tn is strongly associated with poor prognosis and overall low survival. The genetic and biosynthetic mechanisms leading to accumulation of truncated O-glycans are not fully understood and include mutation or dysregulation of glycosyltransferases involved in elongation of O-glycans, as well as relocation of glycosyltransferases controlling initiation of O-glycosylation from Golgi to endoplasmic reticulum. Truncated O-glycans have been proposed to play functional roles for cancer-cell invasiveness, but our understanding of the biological functions of aberrant glycosylation in cancer is still highly limited. Here, we used exome sequencing of most glycosyltransferases in a large series of primary and metastatic pancreatic cancers to rule out somatic mutations as a cause of expression of truncated O-glycans. Instead, we found hypermethylation of core 1 β3-Gal-T-specific molecular chaperone, a key chaperone for O-glycan elongation, as the most prevalent cause. We next used gene editing to produce isogenic cell systems with and without homogenous truncated O-glycans that enabled, to our knowledge, the first polyomic and side-by-side evaluation of the cancer O-glycophenotype in an organotypic tissue model and in xenografts. The results strongly suggest that truncation of O-glycans directly induces oncogenic features of cell growth and invasion. The study provides support for targeting cancer-specific truncated O-glycans with immunotherapeutic measures.

  8. Cross-layer combining of power control and adaptive modulation with truncated ARQ for cognitive radios

    Institute of Scientific and Technical Information of China (English)

    CHENG Shi-lun; YANG Zhen

    2008-01-01

    To maximize throughput and to satisfy users' requirements in cognitive radios, a cross-layer optimization problem combining adaptive modulation and power control at the physical layer and truncated automatic repeat request at the medium access control layer is proposed. Simulation results show the combination of power control, adaptive modulation, and truncated automatic repeat request can regulate transmitter powers and increase the total throughput effectively.

  9. Immature truncated O-glycophenotype of cancer directly induces oncogenic features

    DEFF Research Database (Denmark)

    Radhakrishnan, Prakash; Dabelsteen, Sally; Madsen, Frey Brus

    2014-01-01

    Aberrant expression of immature truncated O-glycans is a characteristic feature observed on virtually all epithelial cancer cells, and a very high frequency is observed in early epithelial premalignant lesions that precede the development of adenocarcinomas. Expression of the truncated O-glycan s......Aberrant expression of immature truncated O-glycans is a characteristic feature observed on virtually all epithelial cancer cells, and a very high frequency is observed in early epithelial premalignant lesions that precede the development of adenocarcinomas. Expression of the truncated O......-glycans, as well as relocation of glycosyltransferases controlling initiation of O-glycosylation from Golgi to endoplasmic reticulum. Truncated O-glycans have been proposed to play functional roles for cancer-cell invasiveness, but our understanding of the biological functions of aberrant glycosylation in cancer...... is still highly limited. Here, we used exome sequencing of most glycosyltransferases in a large series of primary and metastatic pancreatic cancers to rule out somatic mutations as a cause of expression of truncated O-glycans. Instead, we found hypermethylation of core 1 β3-Gal-T-specific molecular...

  10. Hybrid Model Testing Technique for Deep-Sea Platforms Based on Equivalent Water Depth Truncation

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    In this paper, an inner turret moored FPSO which works in the water of 320 m depth, is selected to study the so-called "passively-truncated + numerical-simulation" type of hybrid model testing technique while the truncated water depth is 160 m and the model scale λ=80. During the investigation, the optimization design of the equivalent-depth truncated system is performed by using the similarity of the static characteristics between the truncated system and the full depth one as the objective function. According to the truncated system, the corresponding physical test model is made. By adopting the coupling time domain simulation method, the truncated system model test is numerically reconstructed to carefully verify the computer simulation software and to adjust the corresponding hydrodynamic parameters. Based on the above work, the numerical extrapolation to the full depth system is performed by using the verified computer software and the adjusted hydrodynamic parameters. The full depth system model test is then performed in the basin and the results are compared with those from the numerical extrapolation. At last, the implementation procedure and the key technique of the hybrid model testing of the deep-sea platforms are summarized and printed. Through the above investigations, some beneficial conclusions are presented.

  11. Bioactive oxidatively truncated phospholipids in inflammation and apoptosis: formation, targets, and inactivation.

    Science.gov (United States)

    McIntyre, Thomas M

    2012-10-01

    This report reviews structurally related phospholipid oxidation products that are biologically active where molecular mechanisms have been defined. Phospholipids containing polyunsaturated fatty acyl residues are chemically or enzymatically oxidized to phospholipid hydroperoxides, which may fragment on either side of the newly introduced peroxy function to form phospholipids with a truncated sn-2 residue. These truncated phospholipids not subject to biologic control of their production and, depending on the sn-2 residue length and structure, can stimulate the plasma membrane receptor for PAF. Alternatively, these chemically formed products can be internalized by a transport system to either stimulate the lipid activated nuclear transcription factor PPARγ or at higher levels interact with mitochondria to initiate the intrinsic apoptotic cascade. Intracellular PAF acetylhydrolases specifically hydrolyze truncated phospholipids, and not undamaged, biosynthetic phospholipids, to protect cells from oxidative death. Truncated phospholipids are also formed within cells where they couple cytokine stimulation to mitochondrial damage and apoptosis. The relevance of intracellular truncated phospholipids is shown by the complete protection from cytokine induced apoptosis by PAF acetylhydrolase expression. This protection shows truncated phospholipids are the actual effectors of cytokine mediated toxicity. This article is part of a Special Issue entitled: Oxidized phospholipids-their properties and interactions with proteins.

  12. Truncated forms of BNIP3 act as dominant negatives inhibiting hypoxia-induced cell death

    Science.gov (United States)

    Bristow, Nicolle; Burton, Teralee R; Henson, Elizabeth S; Ong-Justiniano, Coleen; Brown, Michelle; Gibson, Spencer B

    2011-01-01

    BNIP3 (Bcl-2/adenovirus E1B Ninteen Kilodalton Interacting Protein) is a pro-cell death member of the Bcl-2 family of proteins. Its expression is induced by the transcription factor Hypoxia Inducible Factor-1 (HIF-1) under conditions of low oxygen (hypoxia) and is found over expressed in hypoxic regions of many tumors. When over expressed, BNIP3 induces cell death through induction of mitochondrial dysfunction that is dependant on the presence of BNIP3’s TM domain. Herein, we have determined that the SkOv3 ovarian cancer cell line expresses a truncated BNIP3 protein, which results in the elimination of the transmembrane domain. Truncation that eliminates all four domains of BNIP3 protein also inhibits hypoxia-induced cell death in SkOv3, HEK293, U251 and MCF-7 cells. Three different mutations in a BNIP3 expression vector that lead to a truncated BNIP3 protein, lacking TM domain only, or lacking CD, BH3, and TM domains resulted in inhibition of hypoxia-induced cell death when transfected into HEK293 cells. We found that truncated BNIP3 failed to associate with the mitochondria and the truncated BNIP3 lacking all four domains can bind to wild type BNIP3. Taken together, truncation of BNIP3 could be a novel mechanism for cancer cells to avoid hypoxia-induced cell death mediated by BNIP3 over expression. PMID:21138765

  13. Impact of truncated area under the curve on failed bioequivalence studies: a computer simulation analysis.

    Science.gov (United States)

    Mahmood, Iftekhar

    2004-01-01

    The common measures used in a bioequivalence study are area under the curve (AUC) and the maximum plasma concentration. Estimation of AUC requires frequent blood samples. For long half-life drugs, sampling for long periods of time may become cumbersome. To resolve this issue some investigators have suggested the use of truncated AUC in bioequivalence studies for long half-life drugs. The suggested length of time for the truncated AUC is 72 hours. Many studies have been conducted to show that truncated AUC till 72 hours is a suitable approach. However, the suitability of truncated AUC for failed bioequivalence study has not been demonstrated. This report of simulated plasma concentration versus time data evaluates the suitability of truncated AUC for failed bioequivalence study of two hypothetical drugs. The results of the study indicate that the truncated approach for the estimation of the AUC for long half-life drugs in bioequivalence studies may be useful but it also increases the probability of accepting drugs as being bioequivalent when they are not.

  14. Numerical Prediction on the Thermal Interrupting Capability of HV SF6 Gas Circuit Breakers%Numerical Prediction on the Thermal Interrupting Capability of HV SF6Gas Circuit Breakers

    Institute of Scientific and Technical Information of China (English)

    MU Jingwei; GUO Jin; DENG Xiang'e

    2013-01-01

    The design technology for HV SF6 gas circuit breakers is very demanding.A numerical method for prediction of the thermal interruption capability of SF6 gas circuit breakers is established based on the two-dimensional magneto-hydrodynamic (MHD) model and a commercial CFD(computational fluid dynamics) software,FLUENT.Nozzle ablation effect is considered by introducing an independent mass conservation equation for the ablated material to the overall conservation equations of mass,momentum,and energy.The ohmic heating and the radiation of the electric arc are considered in the model by adding relevant source terms.To predict the thermal interruption capability,the arc conductance 200 ns before current zero is used as an indicator.The CFD model is applied for the high current arcing phase,and Mayr arc model is used near the current zero period.The arc conductance at 200 ns before current zero(G200) for various arcing periods are computed by the present method.It shows that there exist a limit of the G200.For those whose arcing periods are within the arcing window,the related G200 are below the limit,therefore result a successful current interruption,and vice versa.The validation of the developed computer simulation tool is therefore verified.The numerical prediction by the simulation tool is verified by the direct interrupting test of 550 kV gas circuit breaker (GCB).The developed computer simulation tool was applied in the design of a 550 kV GCB.Significant benefits have been achieved in terms of both the cost saving and shorten of the development cycle.

  15. Synthesis of Mono- and Di-Glucosides of Zearalenone and α-/β-Zearalenol by Recombinant Barley Glucosyltransferase HvUGT14077

    Science.gov (United States)

    Michlmayr, Herbert; Varga, Elisabeth; Lupi, Francesca; Malachová, Alexandra; Hametner, Christian; Berthiller, Franz; Adam, Gerhard

    2017-01-01

    Zearalenone (ZEN) is an estrogenic mycotoxin occurring in Fusarium-infected cereals. Glucosylation is an important plant defense mechanism and generally reduces the acute toxicity of mycotoxins to humans and animals. Toxicological information about ZEN-glucosides is limited due to the unavailability of larger amounts required for animal studies. HvUGT14077, a recently-validated ZEN-conjugating barley UDP-glucosyltransferase was expressed in Escherichia coli, affinity purified, and characterized. HvUGT14077 possesses high affinity (Km = 3 µM) and catalytic efficiency (kcat/Km = 190 s−1·mM−1) with ZEN. It also efficiently glucosylates the phase-I ZEN-metabolites α-zearalenol and β-zearalenol, with kcat/Km of 40 and 74 s−1·mM−1, respectively. HvUGT14077 catalyzes O-glucosylation at C-14 and C-16 with preference of 14-glucoside synthesis. Furthermore, relatively slow consecutive formation of 14,16-di-glucosides was observed; their structures were tentatively identified by mass spectrometry and for ZEN-14,16-di-glucoside confirmed by nuclear magnetic resonance spectroscopy. Recombinant HvUGT14077 allowed efficient preparative synthesis of ZEN-glucosides, yielding about 90% ZEN-14-glucoside and 10% ZEN-16-glucoside. The yield of ZEN-16-glucoside could be increased to 85% by co-incubation with a β-glucosidase highly selective for ZEN-14-glucoside. Depletion of the co-substrate UDP-glucose was counteracted by a sucrose synthase based regeneration system. This strategy could also be of interest to increase the yield of minor glucosides synthesized by other glucosyltransferases. PMID:28208765

  16. 高压交联电缆材料及工艺发展综述%A Review about Development of HV XLPE Cable Materials and Processes

    Institute of Scientific and Technical Information of China (English)

    欧阳本红; 华明; 邓显波

    2016-01-01

    The history of production and application of HV XLPE cables was reviewed. The influence of the content, shape, and dielectric parameters of impurity in materials, interfacial smoothness between insu-lation layer and semiconductive shielding layer, and manufacturing process on the performance of cables was analyzed. The progress of HV cables technology was reviewed from materials and processes, and the development direction of performance and technology improvement for HV cables was proposed.%回顾了高压交联聚乙烯(XLPE)电缆的生产和应用历史,分析了材料中杂质含量、形状、介电参数、绝缘层与半导电屏蔽层界面光滑程度和电缆制造工艺对电缆性能的影响,从材料和工艺两个方面对高压电缆技术的进展进行了综述,并展望了高压交联电缆绝缘性能提升和技术进步的发展方向。

  17. Massive mortality of Prussian carp Carassius gibelio in the upper Elbe basin associated with herpesviral hematopoietic necrosis (CyHV-2).

    Science.gov (United States)

    Daněk, Tomá; Kalous, Luká; Vesel, Tomá; Krásová, Eva; Reschová, Stanislava; Rylková, Katerˇina; Kulich, Pavel; L, Miloslav Petrt; Pokorová, Dagmar; Knytl, Martin

    2012-12-27

    From 22 May to 10 June 2011 massive mortality of Prussian carp Carassius gibelio was observed in alluvial Lake Řehacˇka close to the Elbe River in the Czech Republic. More than 1400 kg of dead fish were collected and no other fish species were affected. Further molecular and cytogenetic investigation of fish (n = 232) revealed that the Rˇehacˇka population of Prussian carp consisted exclusively of gynogenetic triploid females. The causative agent was identified by means of molecular and electron microscopy as a herpesviral hematopoietic necrosis virus (Cyprinid herpesvirus 2, CyHV-2). This is the first report of CyHV-2 from the Czech Republic and the second finding worldwide of CyHV-2 causing mass mortality of C. gibelio. Some other localities in the upper Elbe River basin where C. gibelio was affected are also noted. We assume that the massive wave of deaths of all female gynogenetic Prussian carp can be attributed to limited genetic variation and the favourable conditions for development of viral disease.

  18. Barley HvHMA1 is a heavy metal pump involved in mobilizing organellar Zn and Cu and plays a role in metal loading into grains

    DEFF Research Database (Denmark)

    Mikkelsen, Maria Dalgaard; Pedas, Pai; Schiller, Michaela;

    2012-01-01

    Heavy metal transporters belonging to the P1B-ATPase subfamily of P-type ATPases are key players in cellular heavy metal homeostasis. Heavy metal transporters belonging to the P1B-ATPase subfamily of P-type ATPases are key players in cellular heavy metal homeostasis. In this study we investigated...... interference did not have an effect on foliar Zn and Cu contents but resulted in a significant increase in grain Zn and Cu content. Heterologous expression of HvHMA1 in heavy metal-sensitive yeast strains increased their sensitivity to Zn, but also to Cu, Co, Cd, Ca, Mn, and Fe. Based on these results, we...... suggest that HvHMA1 is a broad-specificity exporter of metals from chloroplasts and serve as a scavenging mechanism for mobilizing plastid Zn and Cu when cells become deficient in these elements. In grains, HvHMA1 might be involved in mobilizing Zn and Cu from the aleurone cells during grain filling...

  19. X-ray crystal structure of voltage-gated proton channel.

    Science.gov (United States)

    Takeshita, Kohei; Sakata, Souhei; Yamashita, Eiki; Fujiwara, Yuichiro; Kawanabe, Akira; Kurokawa, Tatsuki; Okochi, Yoshifumi; Matsuda, Makoto; Narita, Hirotaka; Okamura, Yasushi; Nakagawa, Atsushi

    2014-04-01

    The voltage-gated proton channel Hv1 (or VSOP) has a voltage-sensor domain (VSD) with dual roles of voltage sensing and proton permeation. Its gating is sensitive to pH and Zn(2+). Here we present a crystal structure of mouse Hv1 in the resting state at 3.45-Å resolution. The structure showed a 'closed umbrella' shape with a long helix consisting of the cytoplasmic coiled coil and the voltage-sensing helix, S4, and featured a wide inner-accessible vestibule. Two out of three arginines in S4 were located below the phenylalanine constituting the gating charge-transfer center. The extracellular region of each protomer coordinated a Zn(2+), thus suggesting that Zn(2+) stabilizes the resting state of Hv1 by competing for acidic residues that otherwise form salt bridges with voltage-sensing positive charges on S4. These findings provide a platform for understanding the general principles of voltage sensing and proton permeation.

  20. BACKGROUND TRACK DENSITY REDUCTION OF 50-HZ-HV ECE-PROCESSED THICK POLYCARBONATE DETECTORS TO IMPROVE LOWER DETECTION LIMIT.

    Science.gov (United States)

    Sohrabi, M; Hakimi, A; Soltani, Z

    2016-12-01

    A recent novel development of 50-Hz-HV ECE of 1-mm-thick and 250-µm-thick polycarbonate track detectors (PCTDs) has proved some promising results for some health physics, dosimetry and ion-beam-related applications. The method while proved having some good characteristics for some applications provided a relatively higher background track density (BGTD) in particular when very high voltages are applied to the PCTDs. In order to decrease the minimum detection limit (MDL) of the PCTDs and to further promote its applications for low dose, the BGTD was reduced by applying a layer removal methodology applying ethylendiamine (EDA). The effects of EDA concentrations (50, 60, 65, 70, 75, 80, 85 and 90 %) in water at room temperature (26°C) and soaking durations up to 100 min at different EDA concentration on BGTD reduction were studied. The thickness of the layer removed from the surface of a PCTD highly depends on the soaking time and EDA concentration; it increases as the EDA concentration increases up to for example 700 µm after 2 h of soaking in the EDA solution. After ∼10 min of soaking duration at any of the above-stated concentrations, the BGTD reaches its minimum value, a value which differs from concentration to concentration. An EDA concentration of 85 % in water provided the lowest BGTD of 64.06 ± 3.12 tracks cm(- 2); ∼6 times lower than that of its original value. It is shown that the layer removal process does not change the registration characteristics of the PCTD and its appearance significantly. The MDL of the PCTDs depends strongly on the BGTD. The MDL values for a desired confidence level were also studied by three calculation methods. The results of the BGTD and the MDL studies under different conditions applied are presented and discussed.

  1. An intelligent approach to machine component health prognostics by utilizing only truncated histories

    Science.gov (United States)

    Lu, Chen; Tao, Laifa; Fan, Huanzhen

    2014-01-01

    Numerous techniques and methods have been proposed to reduce the production downtime, spare-part inventory, maintenance cost, and safety hazards of machineries and equipment. Prognostics are regarded as a significant and promising tool for achieving these benefits for machine maintenance. However, prognostic models, particularly probabilistic-based methods, require a large number of failure instances. In practice, engineering assets are rarely being permitted to run to failure. Many studies have reported valuable models and methods that engage in maximizing both truncated and failure data. However, limited studies have focused on cases where only truncated data are available, which is common in machine condition monitoring. Therefore, this study develops an intelligent machine component prognostics system by utilizing only truncated histories. First, the truncated Minimum Quantization Error (MQE) histories were obtained by Self-organizing Map network after feature extraction. The chaos-based parallel multilayer perceptron network and polynomial fitting for residual errors were adopted to generate the predicted MQEs and failure times following the truncation times. The feed-forward neural network (FFNN) was trained with inputs both from the truncated MQE histories and from the predicted MQEs. The target vectors of survival probabilities were estimated by intelligent product limit estimator using the truncation times and generated failure times. After validation, the FFNN was applied to predict the machine component health of individual units. To validate the proposed method, two cases were considered by using the degradation data generated by bearing testing rig. Results demonstrate that the proposed method is a promising intelligent prognostics approach for machine component health.

  2. Modeling the effect of APC truncation on destruction complex function in colorectal cancer cells.

    Directory of Open Access Journals (Sweden)

    Dipak Barua

    Full Text Available In colorectal cancer cells, APC, a tumor suppressor protein, is commonly expressed in truncated form. Truncation of APC is believed to disrupt degradation of β-catenin, which is regulated by a multiprotein complex called the destruction complex. The destruction complex comprises APC, Axin, β-catenin, serine/threonine kinases, and other proteins. The kinases CK1α and GSK -3β, which are recruited by Axin, mediate phosphorylation of β-catenin, which initiates its ubiquitination and proteosomal degradation. The mechanism of regulation of β-catenin degradation by the destruction complex and the role of truncation of APC in colorectal cancer are not entirely understood. Through formulation and analysis of a rule-based computational model, we investigated the regulation of β-catenin phosphorylation and degradation by APC and the effect of APC truncation on function of the destruction complex. The model integrates available mechanistic knowledge about site-specific interactions and phosphorylation of destruction complex components and is consistent with an array of published data. We find that the phosphorylated truncated form of APC can outcompete Axin for binding to β-catenin, provided that Axin is limiting, and thereby sequester β-catenin away from Axin and the Axin-recruited kinases CK1α and GSK -3β. Full-length APC also competes with Axin for binding to β-catenin; however, full-length APC is able, through its SAMP repeats, which bind Axin and which are missing in truncated oncogenic forms of APC, to bring β-catenin into indirect association with Axin and Axin-recruited kinases. Because our model indicates that the positive effects of truncated APC on β-catenin levels depend on phosphorylation of APC, at the first 20-amino acid repeat, and because phosphorylation of this site is mediated by CK1ε, we suggest that CK1ε is a potential target for therapeutic intervention in colorectal cancer. Specific inhibition of CK1ε is predicted to

  3. Truncation effects in computing free wobble/nutation modes explored using a simple Earth model

    Science.gov (United States)

    Seyed-Mahmoud, Behnam; Rochester, Michael G.; Rogers, Christopher M.

    2017-03-01

    The displacement field accompanying the wobble/nutation of the Earth is conventionally represented by an infinite chain of toroidal and spheroidal vector spherical harmonics, coupled by rotation and ellipticity. Numerical solutions for the eigenperiods require truncation of that chain, and the standard approaches using the linear momentum description (LMD) of deformation during wobble/nutation have truncated it at very low degrees, usually degree 3 or 4, and at most degree 5. The effects of such heavy truncation on the computed eigenperiods have hardly been examined. We here investigate the truncation effects on the periods of the free wobble/nutation modes using a simplified Earth model consisting of a homogeneous incompressible inviscid liquid outer core with a rigid (but not fixed) inner core and mantle. A novel Galerkin method is implemented using a Clairaut coordinate system to solve the classic Poincaré problem in the liquid core and, to close the problem, we use the Lagrangean formulation of the Liouville equation for each of the solid parts of the Earth model. We find that, except for the free inner core nutation (FICN), the periods of the free rotational modes converge rather quickly. The period of the tiltover mode (TOM) is found to excellent accuracy. The computed periods of the Chandler wobble (CW) and free core nutation (FCN) are nearly identical to the values cited in the literature for similar Earth models, but that for the inner core wobble (ICW) is slightly different. Truncation at low-degree harmonics causes the FICN period to fluctuate over a range as large as 90 sd, with different values at different truncation levels. For example, truncation at degree 6 gives a period of 752 sd (almost identical with the value cited in the literature for such an Earth model) but truncation at degree 24 is required to obtain convergence, and the resulting period is 746 ± 1 sd, as more terms are included, with no guarantee that its proximity to earlier values

  4. Truncation effects in computing free wobble/nutation modes explored using a simple Earth model

    Science.gov (United States)

    Seyed-Mahmoud, Behnam; Rochester, Michael G.; Rogers, Christopher M.

    2017-06-01

    The displacement field accompanying the wobble/nutation of the Earth is conventionally represented by an infinite chain of toroidal and spheroidal vector spherical harmonics, coupled by rotation and ellipticity. Numerical solutions for the eigenperiods require truncation of that chain, and the standard approaches using the linear momentum description (LMD) of deformation during wobble/nutation have truncated it at very low degrees, usually degree 3 or 4, and at most degree 5. The effects of such heavy truncation on the computed eigenperiods have hardly been examined. We here investigate the truncation effects on the periods of the free wobble/nutation modes using a simplified Earth model consisting of a homogeneous incompressible inviscid liquid outer core with a rigid (but not fixed) inner core and mantle. A novel Galerkin method is implemented using a Clairaut coordinate system to solve the classic Poincaré problem in the liquid core and, to close the problem, we use the Lagrangean formulation of the Liouville equation for each of the solid parts of the Earth model. We find that, except for the free inner core nutation (FICN), the periods of the free rotational modes converge rather quickly. The period of the tiltover mode is found to excellent accuracy. The computed periods of the Chandler wobble and free core nutation are nearly identical to the values cited in the literature for similar Earth models, but that for the inner core wobble is slightly different. Truncation at low-degree harmonics causes the FICN period to fluctuate over a range as large as 90 sd, with different values at different truncation levels. For example, truncation at degree 6 gives a period of 752 sd (almost identical with the value cited in the literature for such an Earth model) but truncation at degree 24 is required to obtain convergence, and the resulting period is 746 ± 1 sd, as more terms are included, with no guarantee that its proximity to earlier values is other than fortuitous

  5. Performance of mismatched Viterbi receiver on satellite channels

    Science.gov (United States)

    Divsalar, D.; Omura, J. K.

    1979-01-01

    This paper presents an analysis of a satellite communication system using a Viterbi receiver. Here we have a bandlimited nonlinear channel where both uplink and downlink are taken into account as well as the effect of Intersymbol Interference, phase and time synchronization errors. In order that ISI can be combatted effectively, we use a Viterbi demodulator which is designed for the satellite channel when there is no uplink noise. The Viterbi demodulator for the channels with large memory is too complex to be implemented. To reduce the complexity, a Viterbi demodulator with memory shorter than the true channel memory is used. The objective of this paper is to analyze the performance degradation of this 'Mismatched Viterbi Receiver' due to the uplink noise and memory truncation, and to understand how the time and phase synchronization errors influence the performance.

  6. Self-truncation and scaling in Euler-Voigt-α and related fluid models.

    Science.gov (United States)

    Di Molfetta, Giuseppe; Krstlulovic, Giorgio; Brachet, Marc

    2015-07-01

    A generalization of the 3D Euler-Voigt-α model is obtained by introducing derivatives of arbitrary order β (instead of 2) in the Helmholtz operator. The β→∞ limit is shown to correspond to Galerkin truncation of the Euler equation. Direct numerical simulations (DNS) of the model are performed with resolutions up to 2048(3) and Taylor-Green initial data. DNS performed at large β demonstrate that this simple classical hydrodynamical model presents a self-truncation behavior, similar to that previously observed for the Gross-Pitaeveskii equation in Krstulovic and Brachet [Phys. Rev. Lett. 106, 115303 (2011)]. The self-truncation regime of the generalized model is shown to reproduce the behavior of the truncated Euler equation demonstrated in Cichowlas et al. [Phys. Rev. Lett. 95, 264502 (2005)]. The long-time growth of the self-truncation wave number k(st) appears to be self-similar. Two related α-Voigt versions of the eddy-damped quasinormal Markovian model and the Leith model are introduced. These simplified theoretical models are shown to reasonably reproduce intermediate time DNS results. The values of the self-similar exponents of these models are found analytically.

  7. A min cut-set-wise truncation procedure for importance measures computation in probabilistic safety assessment

    Energy Technology Data Exchange (ETDEWEB)

    Duflot, Nicolas [Universite de technologie de Troyes, Institut Charles Delaunay/LM2S, FRE CNRS 2848, 12, rue Marie Curie, BP2060, F-10010 Troyes cedex (France)], E-mail: nicolas.duflot@areva.com; Berenguer, Christophe [Universite de technologie de Troyes, Institut Charles Delaunay/LM2S, FRE CNRS 2848, 12, rue Marie Curie, BP2060, F-10010 Troyes cedex (France)], E-mail: christophe.berenguer@utt.fr; Dieulle, Laurence [Universite de technologie de Troyes, Institut Charles Delaunay/LM2S, FRE CNRS 2848, 12, rue Marie Curie, BP2060, F-10010 Troyes cedex (France)], E-mail: laurence.dieulle@utt.fr; Vasseur, Dominique [EPSNA Group (Nuclear PSA and Application), EDF Research and Development, 1, avenue du Gal de Gaulle, 92141 Clamart cedex (France)], E-mail: dominique.vasseur@edf.fr

    2009-11-15

    A truncation process aims to determine among the set of minimal cut-sets (MCS) produced by a probabilistic safety assessment (PSA) model which of them are significant. Several truncation processes have been proposed for the evaluation of the probability of core damage ensuring a fixed accuracy level. However, the evaluation of new risk indicators as importance measures requires to re-examine the truncation process in order to ensure that the produced estimates will be accurate enough. In this paper a new truncation process is developed permitting to estimate from a single set of MCS the importance measure of any basic event with the desired accuracy level. The main contribution of this new method is to propose an MCS-wise truncation criterion involving two thresholds: an absolute threshold in addition to a new relative threshold concerning the potential probability of the MCS of interest. The method has been tested on a complete level 1 PSA model of a 900 MWe NPP developed by 'Electricite de France' (EDF) and the results presented in this paper indicate that to reach the same accuracy level the proposed method produces a set of MCS whose size is significantly reduced.

  8. A tailored ML-EM algorithm for reconstruction of truncated projection data using few view angles

    Science.gov (United States)

    Mao, Yanfei; Zeng, Gengsheng L.

    2013-06-01

    Dedicated cardiac single photon emission computed tomography (SPECT) systems have the advantage of high speed and sensitivity at no loss, or even a gain, in resolution. The potential drawbacks of these dedicated systems are data truncation by the small field of view (FOV) and the lack of view angles. Serious artifacts, including streaks outside the FOV and distortion in the FOV, are introduced to the reconstruction when using the traditional emission data maximum-likelihood expectation-maximization (ML-EM) algorithm to reconstruct images from the truncated data with a small number of views. In this note, we propose a tailored ML-EM algorithm to suppress the artifacts caused by data truncation and insufficient angular sampling by reducing the image updating step sizes for the pixels outside the FOV. As a consequence, the convergence speed for the pixels outside the FOV is decelerated. We applied the proposed algorithm to truncated analytical data, Monte Carlo simulation data and real emission data with different numbers of views. The computer simulation results show that the tailored ML-EM algorithm outperforms the conventional ML-EM algorithm in terms of streak artifacts and distortion suppression for reconstruction from truncated projection data with a small number of views.

  9. Phycobilisome Truncation Causes Widespread Proteome Changes in Synechocystis sp. PCC 6803

    Energy Technology Data Exchange (ETDEWEB)

    Liberton, Michelle L.; Chrisler, William B.; Nicora, Carrie D.; Moore, Ronald J.; Smith, Richard D.; Koppenaal, David W.; Pakrasi, Himadri B.; Jacobs, Jon M.

    2017-03-02

    Cyanobacteria, such as Synechocystis sp. PCC 6803, utilize large antenna systems to optimize light harvesting and energy transfer to reaction centers. Understanding the structure and function of these complexes, particularly when altered, will help direct bio-design efforts to optimize biofuel production. Three specific phycobilisome (PBS) complex truncation mutants were studied, ranging from progressive truncation of phycocyanin rods in the CB and CK strains, to full removal of all phycocyanin and allophycocyanin cores in the PAL mutant. We applied comprehensive proteomic analyses to investigate both direct and downstream molecular systems implications of each truncation. Results showed that PBS truncation in Synechocystis sp. PCC 6803 dramatically alters core cellular mechanisms beyond energy capture and electron transport, placing constraints upon cellular processes that dramatically altered phenotypes. This included primarily membrane associated functions and altered regulation of cellular resources (i.e., iron, nitrite/nitrate, bicarbonate). Additionally, each PBS truncation, though progressive in nature, exhibited unique phenotypes compare to WT, and hence we assert that in the current realm of extensive bioengineering and bio-design, there remains a continuing need to assess systems-wide protein based abundances to capture potential indirect phenotypic effects.

  10. You’re Cut Off: HD and MHD Simulations of Truncated Accretion Disks

    Science.gov (United States)

    Hogg, J. Drew; Reynolds, Christopher S.

    2017-01-01

    Truncated accretion disks are commonly invoked to explain the spectro-temporal variability from accreting black holes in both small systems, i.e. state transitions in galactic black hole binaries (GBHBs), and large systems, i.e. low-luminosity active galactic nuclei (LLAGNs). In the canonical truncated disk model of moderately low accretion rate systems, gas in the inner region of the accretion disk occupies a hot, radiatively inefficient phase, which leads to a geometrically thick disk, while the gas in the outer region occupies a cooler, radiatively efficient phase that resides in the standard geometrically thin disk. Observationally, there is strong empirical evidence to support this phenomenological model, but a detailed understanding of the disk behavior is lacking. We present well-resolved hydrodynamic (HD) and magnetohydrodynamic (MHD) numerical models that use a toy cooling prescription to produce the first sustained truncated accretion disks. Using these simulations, we study the dynamics, angular momentum transport, and energetics of a truncated disk in the two different regimes. We compare the behaviors of the HD and MHD disks and emphasize the need to incorporate a full MHD treatment in any discussion of truncated accretion disk evolution.

  11. Comparing estimation approaches for the illness-death model under left truncation and right censoring.

    Science.gov (United States)

    Vakulenko-Lagun, Bella; Mandel, Micha

    2016-04-30

    Left-truncated data arise when lifetimes are observed only if they are larger than independent truncation times. For example, in a cross-sectional sampling, only individuals who live long enough to be present on the sampling day are observed. There are several ways to perform statistical inference under this setting. One can do the following: (i) use an unconditional approach, (ii) condition on the value of the truncation variable, or (iii) condition on all the history up to the time of truncation. The latter two approaches are equivalent when analyzing univariate survival outcomes but differ under the multi-state framework. In this paper, we consider the illness-death model and compare between the three estimation approaches in a parametric regression framework. We show that approach (ii) is more efficient than the standard approach (iii), although it requires more computational effort. Approach (i) is the most efficient approach, but it requires knowledge on the distribution of the truncation variable and hence is less robust. The methods are compared using a theoretical example and simulations and are applied to intensive care units data collected in a cross-sectional design, where the illness state corresponds to a bloodstream infection.

  12. Analytic reconstruction algorithms for triple-source CT with horizontal data truncation

    Energy Technology Data Exchange (ETDEWEB)

    Chen, Ming [School of Mathematics and System Science, Shandong University of Science and Technology, Qingdao, Shandong 265590, China and Department of Electrical and Computer Engineering, University of Massachusetts Lowell, Lowell, Massachusetts 01854 (United States); Yu, Hengyong, E-mail: hengyong-yu@ieee.org [Department of Electrical and Computer Engineering, University of Massachusetts Lowell, Lowell, Massachusetts 01854 (United States)

    2015-10-15

    Purpose: This paper explores a triple-source imaging method with horizontal data truncation to enlarge the field of view (FOV) for big objects. Methods: The study is conducted by using theoretical analysis, mathematical deduction, and numerical simulations. The proposed algorithms are implemented in c + + and MATLAB. While the basic platform is constructed in MATLAB, the computationally intensive segments are coded in c + +, which are linked via a MEX interface. Results: A triple-source circular scanning configuration with horizontal data truncation is developed, where three pairs of x-ray sources and detectors are unevenly distributed on the same circle to cover the whole imaging object. For this triple-source configuration, a fan-beam filtered backprojection-type algorithm is derived for truncated full-scan projections without data rebinning. The algorithm is also extended for horizontally truncated half-scan projections and cone-beam projections in a Feldkamp-type framework. Using their method, the FOV is enlarged twofold to threefold to scan bigger objects with high speed and quality. The numerical simulation results confirm the correctness and effectiveness of the developed algorithms. Conclusions: The triple-source scanning configuration with horizontal data truncation cannot only keep most of the advantages of a traditional multisource system but also cover a larger FOV for big imaging objects. In addition, because the filtering is shift-invariant, the proposed algorithms are very fast and easily parallelized on graphic processing units.

  13. Optimal Design of Equivalent Water Depth Truncated Mooring System Based on Baton Pattern Simulated Annealing Algorithm

    Institute of Scientific and Technical Information of China (English)

    张火明; 黄赛花; 管卫兵

    2014-01-01

    The highest similarity degree of static characteristics including both horizontal and vertical restoring force-displacement characteristics of total mooring system, as well as the tension-displacement characteristics of the representative single mooring line between the truncated and full depth system are obtained by annealing simulation algorithm for hybrid discrete variables (ASFHDV, in short). A“baton” optimization approach is proposed by utilizing ASFHDV. After each baton of optimization, if a few dimensional variables reach the upper or lower limit, the boundary of certain dimensional variables shall be expanded. In consideration of the experimental requirements, the length of the upper mooring line should not be smaller than 8 m, and the diameter of the anchor chain on the bottom should be larger than 0.03 m. A 100000 t turret mooring FPSO in the water depth of 304 m, with the truncated water depth being 76 m, is taken as an example of equivalent water depth truncated mooring system optimal design and calculation, and is performed to obtain the conformation parameters of the truncated mooring system. The numerical results indicate that the present truncated mooring system design is successful and effective.

  14. SAK -HV 蛋白通过上调 ABCG5/ABCG8的表达降低胆固醇的吸收%SAK-HV Protein Inhibits Cholesterol Absorption through Up -regulation of ABCG5/ABCG8 Expression

    Institute of Scientific and Technical Information of China (English)

    袁敏; 王旻; 付文亮; 蔡贵玲; 徐东刚

    2015-01-01

    Objective To explore the mechanisms through that SAK-HV protein reduces cholesterol level.Methods We admin-istrated high fat fed ApoE-/-C57 mice with SAK-HV protein of 0.5mg/kg concentration.Blood lipid levels were analysed in enzymic method.qPCR and Western blot were used to evaluate the expression of ABCG5 and ABCG8 in the small intestinal.To see whether the cholesterol absorption in the caco-2, cells was inhibited by SAK-HV protein.We pretreated the cells with SAK-HV protein of 100μg/ml concentration at different time followed by examination of the changes of cholesterol absorption in these SAK-HV-treated cells.Fi-nally we determined whether SAK-HV protein affects the expression of ABCG5 and ABCG8 by both Western blot analysis and qPCR quantification.Results SAK-HV protein can reduce serum cholesterol levels of high fat fed ApoE-/-C57 mice and up-regulate the ex-pression of ABCG5 and ABCG8 at both mRNA and protein level in the small intestine.The SAK-HV protein can inhibit the absorption of cholesterol in caco-2 cells and up-regulate the expression of ABCG5 and ABCG8 at both mRNA and protein level.Conclusion SAK-HV protein inhibits intestinal cholesterol absorption through up-regulation of ABCG5 and ABCG8 expression.%目的:通过动物实验和体外细胞实验探讨SAK-HV蛋白降胆固醇的机制。方法以0.5mg/kg浓度的SAK-HV蛋白治疗高脂喂养的ApoE-/-C57小鼠,酶法检测ApoE-/-C57小鼠血脂水平,定量PCR法( real-time quantitative PCR,qPCR)和蛋白质印迹( Western blot)法检测小肠ABCG5和ABCG8 mRNA和蛋白的表达水平。100μg/ml的SAK-HV蛋白作用caco-2细胞不同时间后,NBD胆固醇作为荧光探针检测SAK-HV蛋白对caco-2细胞胆固醇吸收的影响,q-PCR和Western blot法检测SAK-HV蛋白对caco-2细胞ABCG5和ABCG8 mRNA和蛋白表达水平的影响。结果 SAK-HV蛋白可以降低高脂喂养的ApoE-/-C57小鼠的血清胆固醇

  15. Tsallis statistics and gradually truncated Lévy flight-distribution of an economical index

    Science.gov (United States)

    Gupta, Hari M.; Campanha, José R.

    2002-06-01

    Tsallis postulated a generalized form for entropy and give rise to a new statistics now known as Tsallis statistics. In the present work, we compare the Tsallis statistics with the gradually truncated Lévy flight, and discuss the distribution of an economical index-the Standard and Poor's 500-using the values of standard deviation as calculated by our model. We find that both statistics give almost the same distribution. Thus we feel that gradual truncation of Lévy distribution, after certain critical step size for describing complex systems, is a requirement of generalized thermodynamics or similar. The gradually truncated Lévy flight is based on physical considerations and bring a better physical picture of the dynamics of the whole system. Tsallis statistics gives a theoretical support. Both statistics together can be utilized for the development of a more exact portfolio theory or to understand better the complexities in human and financial behaviors. A comparison of both statistics is made.

  16. The Apparent Lack of Lorentz Invariance in Zero-Point Fields with Truncated Spectra

    Directory of Open Access Journals (Sweden)

    Daywitt W. C.

    2009-01-01

    Full Text Available The integrals that describe the expectation values of the zero-point quantum-field-theoretic vacuum state are semi-infinite, as are the integrals for the stochastic electrodynamic vacuum. The unbounded upper limit to these integrals leads in turn to infinite energy densities and renormalization masses. A number of models have been put forward to truncate the integrals so that these densities and masses are finite. Unfortunately the truncation apparently destroys the Lorentz invariance of the integrals. This note argues that the integrals are naturally truncated by the graininess of the negative-energy Planck vacuum state from which the zero-point vacuum arises, and are thus automatically Lorentz invariant.

  17. Truncated correlation hierarchy schemes for driven-dissipative multimode quantum systems

    CERN Document Server

    Casteels, Wim; Boité, Alexandre Le; Storme, Florent; Ciuti, Cristiano

    2016-01-01

    We present a method to describe driven-dissipative multi-mode systems by considering a truncated hierarchy of equations for the correlation functions. We consider two hierarchy truncation schemes with a global cutoff on the correlation order, which is the sum of the exponents of the operators involved in the correlation functions: a 'hard' cutoff corresponding to an expansion around the vacuum, which applies to a regime where the number of excitations per site is small; a 'soft' cutoff which corresponds to an expansion around coherent states, which can be applied for large excitation numbers per site. This approach is applied to describe the bunching-antibunching transition in the driven-dissipative Bose-Hubbard model for photonic systems. The results have been successfully benchmarked by comparison with calculations based on the corner-space renormalization method in 1D and 2D systems. The regime of validity and strengths of the present truncation methods are critically discussed.

  18. Numerical Reconstruction of the Covariance Matrix of a Spherically Truncated Multinormal Distribution

    Directory of Open Access Journals (Sweden)

    Filippo Palombi

    2017-01-01

    Full Text Available We relate the matrix SB of the second moments of a spherically truncated normal multivariate to its full covariance matrix Σ and present an algorithm to invert the relation and reconstruct Σ from SB. While the eigenvectors of Σ are left invariant by the truncation, its eigenvalues are nonuniformly damped. We show that the eigenvalues of Σ can be reconstructed from their truncated counterparts via a fixed point iteration, whose convergence we prove analytically. The procedure requires the computation of multidimensional Gaussian integrals over an Euclidean ball, for which we extend a numerical technique, originally proposed by Ruben in 1962, based on a series expansion in chi-square distributions. In order to study the feasibility of our approach, we examine the convergence rate of some iterative schemes on suitably chosen ensembles of Wishart matrices. We finally discuss the practical difficulties arising in sample space and outline a regularization of the problem based on perturbation theory.

  19. Modeling Truncated Loss Data of Operational Risk in E-banking

    Directory of Open Access Journals (Sweden)

    Maryam Pirouz

    2013-11-01

    Full Text Available Operational risk is an important risk component for financial institutions, especially in E-banking. Large amount of capital that are assigned to decrease this risk are evidence to this subject. One of the most important factors for modeling operational risk to estimate capital charge is loss data collections of banks. But sometimes for reasons like decreasing the costs, banks save only the losses above some determined thresholds at their database. For achieving accurate capital charge, this threshold should be considered in determining capital charge. This paper focuses on modeling truncated loss data above some given threshold. We discuss several statistical methods for modeling truncated data, and suggest the best one for modeling truncated loss data. We have tested our suggested model for some operational loss data samples. Our results indicate that our approach can be useful for increasing accuracy of estimating operational risk capital charge in E- banking.

  20. On the viability of the truncated Israel-Stewart theory in cosmology

    Science.gov (United States)

    Shogin, Dmitry; Amund Amundsen, Per; Hervik, Sigbjørn

    2015-10-01

    We apply the causal Israel-Stewart theory of irreversible thermodynamics to model the matter content of the Universe as a dissipative fluid with bulk and shear viscosity. Along with the full transport equations we consider their widely used truncated version. By implementing a dynamical systems approach to Bianchi type IV and V cosmological models with and without cosmological constant, we determine the future asymptotic states of such Universes and show that the truncated Israel-Stewart theory leads to solutions essentially different from the full theory. The solutions of the truncated theory may also manifest unphysical properties. Finally, we find that in the full theory shear viscosity can give a substantial rise to dissipative fluxes, driving the fluid extremely far from equilibrium, where the linear Israel-Stewart theory ceases to be valid.

  1. Investigation on optimization design of equivalent water depth truncated mooring system

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    The oil industry is now increasingly concentrating their efforts and activities in connection with de- veloping fields in deeper waters, ranging typically from 500 m to 3000 m worldwide. However, the modeling of a full-depth system has become difficult presently; no tank facility is sufficiently large to perform the testing of a complete FPS with compliant mooring in 1000 m to 3000 m depth, within rea- sonable limits of model scale. Until recently, the most feasible procedure to meet this challenge seems to be the so-called "hybrid model testing technique". To implement this technique, the first and im- portant step is to design the equivalent water depth truncated mooring system. In this work, the opti- mization design of the equivalent water depth truncated mooring system in hybrid model testing for deep sea platforms is investigated. During the research, the similarity of static characteristics between the truncated and full depth system is mainly considered. The optimization mathematical model for the equivalent water depth truncated system design is set up by using the similarity in numerical value of the static characteristics between the truncated system and the full depth one as the objective function. The dynamic characteristic difference between the truncated and full depth mooring system can be minished by selecting proper design rule. To calculate the static characteristics of the mooring system, the fourth order Runge-Kutta method is used to solve the static equilibrium equation of the single mooring line. After the static characteristic of the single mooring line is calculated, the static charac- teristic of the whole mooring system is calculated with Lagrange numerical interpolation method. The mooring line material database is established and the standard material name and the diameter of the mooring line are selected as the primary key. The improved simulated annealing algorithm for continual & discrete variables and the improved complex algorithm

  2. Investigation on optimization design of equivalent water depth truncated mooring system

    Institute of Scientific and Technical Information of China (English)

    ZHANG HuoMing; SUN ZhiLin; YANG JianMin; GAO MingZheng

    2009-01-01

    The oil industry is now increasingly concentrating their efforts and activities in connection with de-veloping fields in deeper waters, ranging typically from 500 m to 3000 m worldwide. However, the modeling of a full-depth system has become difficult presently; no tank facility is sufficiently large to perform the testing of a complete FPS with compliant mooring in 1000 m to 3000 m depth, within rea-sonable limits of model scale. Until recently, the most feasible procedure to meet this challenge seems to be the so-called "hybrid model testing technique". To implement this technique, the first and im-portant step is to design the equivalent water depth truncated mooring system. In this work, the opti-mization design of the equivalent water depth truncated mooring system in hybrid model testing for deep sea platforms is investigated. During the research, the similarity of static characteristics between the truncated and full depth system is mainly considered. The optimization mathematical model for the equivalent water depth truncated system design is set up by using the similarity in numerical value of the static characteristics between the truncated system and the full depth one as the objective function. The dynamic characteristic difference between the truncated and full depth mooring system can be minished by selecting proper design rule. To calculate the static characteristics of the mooring system, the fourth order Runge-Kutta method is used to solve the static equilibrium equation of the single mooring line. After the static characteristic of the single mooring line is calculated, the static charac-teristic of the whole mooring system is calculated with Lagrange numerical interpolation method. The mooring line material database is established and the standard material name and the diameter of the mooring line are selected as the primary key. The improved simulated annealing algorithm for continual & discrete variables and the improved complex algorithm for

  3. Optical asymmetric cryptography based on elliptical polarized light linear truncation and a numerical reconstruction technique.

    Science.gov (United States)

    Lin, Chao; Shen, Xueju; Wang, Zhisong; Zhao, Cheng

    2014-06-20

    We demonstrate a novel optical asymmetric cryptosystem based on the principle of elliptical polarized light linear truncation and a numerical reconstruction technique. The device of an array of linear polarizers is introduced to achieve linear truncation on the spatially resolved elliptical polarization distribution during image encryption. This encoding process can be characterized as confusion-based optical cryptography that involves no Fourier lens and diffusion operation. Based on the Jones matrix formalism, the intensity transmittance for this truncation is deduced to perform elliptical polarized light reconstruction based on two intensity measurements. Use of a quick response code makes the proposed cryptosystem practical, with versatile key sensitivity and fault tolerance. Both simulation and preliminary experimental results that support theoretical analysis are presented. An analysis of the resistance of the proposed method on a known public key attack is also provided.

  4. Secondary structure prediction of protein constructs using random incremental truncation and vacuum-ultraviolet CD spectroscopy

    CERN Document Server

    Pukáncsik, M; Matsuo, K; Gekko, K; Hart, D; Kézsmárki, I; Vértessy, B G

    2014-01-01

    A novel uracil-DNA degrading protein factor (termed UDE) was identified in Drosophila melanogaster with no significant structural and functional homology to other uracil-DNA binding or processing factors. Determination of the 3D structure of UDE will be a true breakthrough in description of the molecular mechanism of action of UDE catalysis, as well as in general uracil-recognition and nuclease action. The revolutionary ESPRIT technology was applied to the novel protein UDE to overcome problems in identifying soluble expressing constructs given the absence of precise information on domain content and arrangement. Nine specimen from the created numerous truncated constructs of UDE were choosen to dechiper structural and functional relationships. VUVCD with neural network was performed to define the secondary structure content and location of UDE and its truncated variants. The quantitative analysis demonstrated exclusive {\\alpha}-helical content for the full-length protein, which is preserved in the truncated ...

  5. Osteology of Priocharax and remarkable developmental truncation in a miniature Amazonian fish (Teleostei: Characiformes: Characidae).

    Science.gov (United States)

    Mattox, George M T; Britz, Ralf; Toledo-Piza, Mônica

    2016-01-01

    Establishing phylogenetic relationships of miniature fishes is challenging in taxa with developmental truncation. Within the Characiformes, developmental truncation appears to be relatively rare, with the Neotropical genus Priocharax being an example. Priocharax includes three miniature species among the smallest of the order and has been hypothesized to belong to the Heterocharacinae. The pronounced reduction in its skeleton, however, prevented a clearer evaluation of its relationships. The present detailed osteological study was designed to address this question and revealed that 21 bones are absent and nine other skeletal structures are simplified in Priocharax when compared to other characids. Comparison of the skeleton of adult Priocharax with early developmental stages of other characids demonstrated that most of the absences and simplifications can be interpreted as developmental truncations. The most striking developmental truncations are in the pectoral girdle, in which the endoskeleton remains entirely cartilaginous. Other interesting truncations are in the ethmoid region of the skull, infraorbital series, and Weberian apparatus, in which the claustrum is absent. Our study also revealed some unusual sexual dimorphisms in the pelvic girdle. Two cladistic analyses were performed to assess the relationships of Priocharax within the Heterocharacinae. The first consisted of a traditional analysis in which all absences and reductions of Priocharax were coded in the same way as in the remaining taxa. This resulted in three equally most parsimonious topologies, all of which have Priocharax as the most basal taxon of the Heterocharacinae. The second analysis incorporated ontogenetic information, and most absences and reductions of Priocharax were reinterpreted as apomorphic conditions and thus, coded differently from similar conditions in outgroups. This resulted in a single phylogenetic hypothesis with Priocharax and Gnathocharax as sister groups based on seven

  6. The Dynamics of Truncated Black Hole Accretion Disks. I. Viscous Hydrodynamic Case

    Science.gov (United States)

    Hogg, J. Drew; Reynolds, Christopher S.

    2017-07-01

    Truncated accretion disks are commonly invoked to explain the spectro-temporal variability in accreting black holes in both small systems, i.e., state transitions in galactic black hole binaries (GBHBs), and large systems, i.e., low-luminosity active galactic nuclei (LLAGNs). In the canonical truncated disk model of moderately low accretion rate systems, gas in the inner region of the accretion disk occupies a hot, radiatively inefficient phase, which leads to a geometrically thick disk, while the gas in the outer region occupies a cooler, radiatively efficient phase that resides in the standard geometrically thin disk. Observationally, there is strong empirical evidence to support this phenomenological model, but a detailed understanding of the dynamics of truncated disks is lacking. We present a well-resolved viscous, hydrodynamic simulation that uses an ad hoc cooling prescription to drive a thermal instability and, hence, produce the first sustained truncated accretion disk. With this simulation, we perform a study of the dynamics, angular momentum transport, and energetics of a truncated disk. We find that the time variability introduced by the quasi-periodic transition of gas from efficient cooling to inefficient cooling impacts the evolution of the simulated disk. A consequence of the thermal instability is that an outflow is launched from the hot/cold gas interface, which drives large, sub-Keplerian convective cells into the disk atmosphere. The convective cells introduce a viscous θ - ϕ stress that is less than the generic r - ϕ viscous stress component, but greatly influences the evolution of the disk. In the truncated disk, we find that the bulk of the accreted gas is in the hot phase.

  7. The truncated lognormal distribution as a luminosity function for SWIFT-BAT gamma-ray bursts

    CERN Document Server

    Zaninetti, L

    2016-01-01

    The determination of the luminosity function (LF) in gamma ray bursts (GRBs) depends on the adopted cosmology, each one characterized by its corresponding luminosity distance. Here we analyse three cosmologies: the standard cosmology, the plasma cosmology, and the pseudo-Euclidean universe. The LF of the GRBs is firstly modeled by the lognormal distribution and the four broken power law, and secondly by a truncated lognormal distribution. The truncated lognormal distribution fits acceptably the range in luminosity of GRBs as a function of the redshift.

  8. Truncated Moments of Nonsinglet Parton Distributions in the double logarithmic $ln^2x$ approximation

    CERN Document Server

    Kotlorz, D

    2004-01-01

    The method of truncated Mellin moments in a solving QCD evolution equations of the nonsinglet structure functions $F_2^{NS}(x,Q^2)$ and $g_1^{NS}(x,Q^2)$ is presented. All calculations are performed within double logarithmic $ln^2x$ approximation. An equation for truncated moments which incorporates $ln^2x$ effects is formulated and solved for the unintegrated structure function $f^{NS}(x,Q^2)$. The contribution to the Bjorken sum rule coming from the region of very small $x$ is quantified. Further possible improvement of this approach is also discussed.

  9. The Truncated Lognormal Distribution as a Luminosity Function for SWIFT-BAT Gamma-Ray Bursts

    Directory of Open Access Journals (Sweden)

    Lorenzo Zaninetti

    2016-11-01

    Full Text Available The determination of the luminosity function (LF in Gamma ray bursts (GRBs depends on the adopted cosmology, each one characterized by its corresponding luminosity distance. Here, we analyze three cosmologies: the standard cosmology, the plasma cosmology and the pseudo-Euclidean universe. The LF of the GRBs is firstly modeled by the lognormal distribution and the four broken power law and, secondly, by a truncated lognormal distribution. The truncated lognormal distribution fits acceptably the range in luminosity of GRBs as a function of the redshift.

  10. Application of the AMPLE cluster-and-truncate approach to NMR structures for molecular replacement

    Energy Technology Data Exchange (ETDEWEB)

    Bibby, Jaclyn [University of Liverpool, Liverpool L69 7ZB (United Kingdom); Keegan, Ronan M. [Research Complex at Harwell, STFC Rutherford Appleton Laboratory, Didcot OX11 0FA (United Kingdom); Mayans, Olga [University of Liverpool, Liverpool L69 7ZB (United Kingdom); Winn, Martyn D. [Science and Technology Facilities Council Daresbury Laboratory, Warrington WA4 4AD (United Kingdom); Rigden, Daniel J., E-mail: drigden@liv.ac.uk [University of Liverpool, Liverpool L69 7ZB (United Kingdom)

    2013-11-01

    Processing of NMR structures for molecular replacement by AMPLE works well. AMPLE is a program developed for clustering and truncating ab initio protein structure predictions into search models for molecular replacement. Here, it is shown that its core cluster-and-truncate methods also work well for processing NMR ensembles into search models. Rosetta remodelling helps to extend success to NMR structures bearing low sequence identity or high structural divergence from the target protein. Potential future routes to improved performance are considered and practical, general guidelines on using AMPLE are provided.

  11. Estimation of Panel Data Regression Models with Two-Sided Censoring or Truncation

    DEFF Research Database (Denmark)

    Alan, Sule; Honore, Bo E.; Hu, Luojia;

    2014-01-01

    This paper constructs estimators for panel data regression models with individual speci…fic heterogeneity and two–sided censoring and truncation. Following Powell (1986) the estimation strategy is based on moment conditions constructed from re–censored or re–truncated residuals. While these moment...... conditions do not identify the parameter of interest, they can be used to motivate objective functions that do. We apply one of the estimators to study the e¤ect of a Danish tax reform on household portfolio choice. The idea behind the estimators can also be used in a cross sectional setting....

  12. HvDep1 Is a Positive Regulator of Culm Elongation and Grain Size in Barley and Impacts Yield in an Environment-Dependent Manner

    Science.gov (United States)

    Wendt, Toni; Holme, Inger; Dockter, Christoph; Preuß, Aileen; Thomas, William; Waugh, Robbie; Braumann, Ilka

    2016-01-01

    Heterotrimeric G proteins are intracellular membrane-attached signal transducers involved in various cellular processes in both plants and animals. They consist of three subunits denoted as α, β and γ. The γ-subunits of the so-called AGG3 type, which comprise a transmembrane domain, are exclusively found in plants. In model species, these proteins have been shown to participate in the control of plant height, branching and seed size and could therefore impact the harvestable yield of various crop plants. Whether AGG3-type γ-subunits influence yield in temperate cereals like barley and wheat remains unknown. Using a transgenic complementation approach, we show here that the Scottish malting barley cultivar (cv.) Golden Promise carries a loss-of-function mutation in HvDep1, an AGG3-type subunit encoding gene that positively regulates culm elongation and seed size in barley. Somewhat intriguingly, agronomic field data collected over a 12-year period reveals that the HvDep1 loss-of-function mutation in cv. Golden Promise has the potential to confer either a significant increase or decrease in harvestable yield depending on the environment. Our results confirm the role of AGG3-type subunit-encoding genes in shaping plant architecture, but interestingly also indicate that the impact HvDep1 has on yield in barley is both genotypically and environmentally sensitive. This may explain why widespread exploitation of variation in AGG3-type subunit-encoding genes has not occurred in temperate cereals while in rice the DEP1 locus is widely exploited to improve harvestable yield. PMID:28005988

  13. Inversion of H/V in layered media from seismic ambient noise based on the diffuse field theory and on improved calculation of Green functions

    Science.gov (United States)

    Sánchez-Sesma, Francisco J.; Piña, José; García-Jerez, Antonio; Luzón, Francisco; Perton, Mathieu

    2014-05-01

    The microtremor H/V spectral ratio (MHVSR) is widely used to assess the dominant frequency of soil sites. Measurements are relatively simple as only one station is needed. It has been recently proposed a theoretical basis linking ambient noise vibrations with diffuse field theory. In this theory the directional energy density computed as the average spectral density of motion at a point, is proportional to the imaginary part of Green function at the observation point. Appropriate normalization is crucial to make the experimental spectral ratios closer to the theoretical counterpart. According to this theory the square of H/V is twice the ratio ImG11 / ImG33, where ImG11 and ImG33 are the imaginary part of Green functions at the load point for horizontal and vertical components, respectively. In order to efficiently compute the imaginary part of Green's functions in a layered medium we start from an integral on the complex k plane and, using Harkrider's nomenclature, separate formulae for body-, Rayleigh-, and Love-wave components to the spectral densities are obtained. Then the poles allow for integration using the Cauchy residue theorem plus some contributions from branch integrals. It is possible to isolate pseudo reflections from ImG11 and thus constrain the inversion of soil profile. We assess ImG11 removing the influence of illumination spectrum using the H/V spectral ratio and an estimate of ImG33 (from an a priori model) by means of ImG11=0.5(H/V )2*ImG33. It has been found that ImG33 is less sensitive to details of stratigraphy. In fact, the Poisson ratio of the uppermost layer controls the slope in high frequency. With the obtained model ImG33 can be updated and the estimate of ImG11 will be improved. ACKNOWLEDGEMENTS. This research has been partially supported by DGAPA-UNAM under Project IN104712, by the MINECO research project CGL2010-16250, Spain, by the EU with FEDER, and the AXA Research Fund.

  14. Investigation of the attenuation properties of the HV board grid of electric-powered vehicles; Untersuchung der Daempfungseigenschaften des Hochvoltbordnetzes in Elektrofahrzeugen

    Energy Technology Data Exchange (ETDEWEB)

    Obholz, Martin; Baerenfaenger, Joerg [EMC Test NRW GmbH, Dortmund (Germany); Maarleveld, Marc; Hirsch, Holger [Duisburg Univ. (Germany). Lehrstuhl fuer Energietransport und -speicherung

    2012-11-01

    Power electronics components with transient switching processes cause AC components in the HV on-board supply system, with current and voltage harmonics with frequencies in the two-digit MHz range. Depending on their length and design, the HV lines can act as effective antenna structures. It is already common to shield HV lines for better EMP but the shield should be continued also in the connected casings. Material characteristics must be considered for weight and cost optimisation. For this reason, shield attenuation dimensions are calculated for exemplary casings for the frequency ranges that are relevant in electromobility. Afater this, the intrinsic sheild attenuation values of three different materials are measured in the frequency range of 10 - 100 MHz, and their relevance for applications in electormobility is assessed. The coaxial HV lines differ from other coaxial lines in their system characteristics; coupling attenuation and transfer impedance are important characteristics. To measure these characteristics, measuring tools must be adapted to the concrete applications. The methodology and the identified characteristics are discussed in detail. [German] Baugruppen der Leistungselektronik mit transienten Schaltvorgaengen verursachen Wechselspannungsanteile im Hochvoltbordnetz, die Strom- und Spannungsoberschwingungen mit Frequenzauspraegungen bis in den zweistelligen MHz-Bereich zeigen. Die Hochvoltleitungen koennen dann abhaengig von Laenge und Ausfuehrung als effektive Antennenstrukturen agieren. Zur Einhaltung der elektromagnetischen Vertraeglichkeit, werden bereits Schirmungen der Hochvoltleitungen eingesetzt. Jedoch muss fuer eine effektive elektromagnetische Entkopplung die Schirmung auch in den angeschlossenen Gehaeusen konsequent weitergefuehrt werden. Hierbei sind materialspezifische Anforderungen zu beachten, die Gewichts- und Kostenoptimierungen unterliegen. Daher wird fuer die in der Elektromobilitaet relevanten Frequenzbereiche eine

  15. Calcium-activated potassium channels sustain calcium signaling in T lymphocytes. Selective blockers and manipulated channel expression levels.

    Science.gov (United States)

    Fanger, C M; Rauer, H; Neben, A L; Miller, M J; Rauer, H; Wulff, H; Rosa, J C; Ganellin, C R; Chandy, K G; Cahalan, M D

    2001-04-13

    To maintain Ca(2+) entry during T lymphocyte activation, a balancing efflux of cations is necessary. Using three approaches, we demonstrate that this cation efflux is mediated by Ca(2+)-activated K(+) (K(Ca)) channels, hSKCa2 in the human leukemic T cell line Jurkat and hIKCa1 in mitogen-activated human T cells. First, several recently developed, selective and potent pharmacological inhibitors of K(Ca) channels but not K(V) channels reduce Ca(2+) entry in Jurkat and in mitogen-activated human T cells. Second, dominant-negative suppression of the native K(Ca) channel in Jurkat T cells by overexpression of a truncated fragment of the cloned hSKCa2 channel decreases Ca(2+) influx. Finally, introduction of the hIKCa1 channel into Jurkat T cells maintains rapid Ca(2+) entry despite pharmacological inhibition of the native small conductance K(Ca) channel. Thus, K(Ca) channels play a vital role in T cell Ca(2+) signaling.

  16. A truncating mutation of HDAC2 in human cancers confers resistance to histone deacetylase inhibition

    DEFF Research Database (Denmark)

    Ropero, S; Fraga, MF; Ballestar, E;

    2006-01-01

    Disruption of histone acetylation patterns is a common feature of cancer cells, but very little is known about its genetic basis. We have identified truncating mutations in one of the primary human histone deacetylases, HDAC2, in sporadic carcinomas with microsatellite instability and in tumors a...

  17. Interp olation by Bivariate Polynomials Based on Multivariate F-truncated Powers

    Institute of Scientific and Technical Information of China (English)

    Yuan Xue-mei

    2014-01-01

    The solvability of the interpolation by bivariate polynomials based on multivariate F-truncated powers is considered in this short note. It unifies the point-wise Lagrange interpolation by bivariate polynomials and the interpolation by bivari-ate polynomials based on linear integrals over segments in some sense.

  18. Edgeworth expansion of the Studentized product-limit estimator for truncated and censored data

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    Based on random left truncated and right censored data we investigate the one-term Edgeworth expansion for the Studentized product-limit estimator, and show that the Edgeworth expansion is close to the exact distribution of the Studentized product-limit estimator with a remainder of o(n-1/2).

  19. Analysis of DIS structure functions of the nucleon within truncated Mellin moments approach

    CERN Document Server

    Kotlorz, D

    2016-01-01

    We present generalized evolution equations and factorization in terms of the truncated Mellin moments (TMM) of the parton distributions and structure functions. We illustrate the $x$ and $Q^2$ dependence of TMM in the polarized case. Using the TMM approach we compare the integrals of $g_1$ with HERMES and COMPASS data from the limited $x$-ranges.

  20. THE RATE OF UNIFORM CONVERGENCE OF THE SURVIVAL FUNCTION ESTIMATOR FOR TRUNCATED AND CENSORED DATA

    Institute of Scientific and Technical Information of China (English)

    SUN Liuquan

    2001-01-01

    For left truncated and right censored data, based on a strongrepresentation of the product-limit estimator of the survival function, we derive the sufficient and necessary condition for the rate of strong uniform convergence of the product-limit estimator over the whole line.

  1. Secondary Structure Prediction of Protein Constructs Using Random Incremental Truncation and Vacuum-Ultraviolet CD Spectroscopy

    Science.gov (United States)

    Pukáncsik, Mária; Orbán, Ágnes; Nagy, Kinga; Matsuo, Koichi; Gekko, Kunihiko; Maurin, Damien; Hart, Darren; Kézsmárki, István; Vertessy, Beata G.

    2016-01-01

    A novel uracil-DNA degrading protein factor (termed UDE) was identified in Drosophila melanogaster with no significant structural and functional homology to other uracil-DNA binding or processing factors. Determination of the 3D structure of UDE is excepted to provide key information on the description of the molecular mechanism of action of UDE catalysis, as well as in general uracil-recognition and nuclease action. Towards this long-term aim, the random library ESPRIT technology was applied to the novel protein UDE to overcome problems in identifying soluble expressing constructs given the absence of precise information on domain content and arrangement. Nine constructs of UDE were chosen to decipher structural and functional relationships. Vacuum ultraviolet circular dichroism (VUVCD) spectroscopy was performed to define the secondary structure content and location within UDE and its truncated variants. The quantitative analysis demonstrated exclusive α-helical content for the full-length protein, which is preserved in the truncated constructs. Arrangement of α-helical bundles within the truncated protein segments suggested new domain boundaries which differ from the conserved motifs determined by sequence-based alignment of UDE homologues. Here we demonstrate that the combination of ESPRIT and VUVCD spectroscopy provides a new structural description of UDE and confirms that the truncated constructs are useful for further detailed functional studies. PMID:27273007

  2. Reduction of truncation errors in planar, cylindrical, and partial spherical near-field antenna measurements

    DEFF Research Database (Denmark)

    Cano-Fácila, Francisco José; Pivnenko, Sergey; Sierra-Castaner, Manuel

    2012-01-01

    A method to reduce truncation errors in near-field antenna measurements is presented. The method is based on the Gerchberg-Papoulis iterative algorithm used to extrapolate band-limited functions and it is able to extend the valid region of the calculatedfar-field pattern up to the whole forward...

  3. A new method to reduce truncation errors in partial spherical near-field measurements

    DEFF Research Database (Denmark)

    Cano-Facila, F J; Pivnenko, Sergey

    2011-01-01

    angular sector as well as a truncation error is present in the calculated far-field pattern within this sector. The method is based on the Gerchberg-Papoulis algorithm used to extrapolate functions and it is able to extend the valid region of the calculated far-field pattern up to the whole forward...

  4. Reduction of truncation errors in partial spherical near-field antenna measurements

    DEFF Research Database (Denmark)

    Pivnenko, Sergey; Cano Facila, Francisco J.

    2010-01-01

    In this report, a new and effective method for reduction of truncation errors in partial spherical near-field (SNF) antenna measurements is proposed. This method is based on the Gerchberg-Papoulis algorithm used to extrapolate functions and it is able to extend the valid region of the far...

  5. Truncated ORF1 proteins can suppress LINE-1 retrotransposition in trans.

    Science.gov (United States)

    Sokolowski, Mark; Chynces, May; deHaro, Dawn; Christian, Claiborne M; Belancio, Victoria P

    2017-05-19

    Long interspersed element 1 (L1) is an autonomous non-LTR retroelement that is active in mammalian genomes. Although retrotranspositionally incompetent and functional L1 loci are present in the same genomes, it remains unknown whether non-functional L1s have any trans effect on mobilization of active elements. Using bioinformatic analysis, we identified over a thousand of human L1 loci containing at least one stop codon in their ORF1 sequence. RNAseq analysis confirmed that many of these loci are expressed. We demonstrate that introduction of equivalent stop codons in the full-length human L1 sequence leads to the expression of truncated ORF1 proteins. When supplied in trans some truncated human ORF1 proteins suppress human L1 retrotransposition. This effect requires the N-terminus and coiled-coil domain (C-C) as mutations within the ORF1p C-C domain abolish the suppressive effect of truncated proteins on L1 retrotransposition. We demonstrate that the expression levels and length of truncated ORF1 proteins influence their ability to suppress L1 retrotransposition. Taken together these findings suggest that L1 retrotransposition may be influenced by coexpression of defective L1 loci and that these L1 loci may reduce accumulation of de novo L1 integration events. © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.

  6. Mitochondrial genome evolution and tRNA truncation in Acariformes mites: new evidence from eriophyoid mites.

    Science.gov (United States)

    Xue, Xiao-Feng; Guo, Jing-Feng; Dong, Yan; Hong, Xiao-Yue; Shao, Renfu

    2016-01-06

    The subclass Acari (mites and ticks) comprises two super-orders: Acariformes and Parasitiformes. Most species of the Parasitiformes known retained the ancestral pattern of mitochondrial (mt) gene arrangement of arthropods, and their mt tRNAs have the typical cloverleaf structure. All of the species of the Acariformes known, however, have rearranged mt genomes and truncated mt tRNAs. We sequenced the mt genomes of two species of Eriophyoidea: Phyllocoptes taishanensis and Epitrimerus sabinae. The mt genomes of P. taishanensis and E. sabinae are 13,475 bp and 13,531 bp, respectively, are circular and contain the 37 genes typical of animals; most mt tRNAs are highly truncated in both mites. On the other hand, these two eriophyoid mites have the least rearranged mt genomes seen in the Acariformes. Comparison between eriophyoid mites and other Aacariformes mites showed that: 1) the most recent common ancestor of Acariformes mites retained the ancestral pattern of mt gene arrangement of arthropods with slight modifications; 2) truncation of tRNAs for cysteine, phenylalanine and histidine occurred once in the most recent common ancestor of Acariformes mites whereas truncation of other tRNAs occurred multiple times; and 3) the placement of eriophyoid mites in the order Trombidiformes needs to be reviewed.

  7. LOCAL ASYMPTOTIC PROPERTIES OF HAZARD RATE ESTIMATORS FOR TRUNCATED AND CENSORED DATA

    Institute of Scientific and Technical Information of China (English)

    SUN Liuquan; WU Guofu; WEI Xianhua

    2001-01-01

    Functional laws of the iterated logarithm are obtained for cumulative hazard processes in the neighborhood of a fixed point when the data are subject to left truncation and right censorship. On the basis of these results the exact rates of pointwise almost sure convergence for various types of kernel hazard rate estimators are derived.

  8. ABCLS method for high-reliability aerospace mechanism with truncated random uncertainties

    Directory of Open Access Journals (Sweden)

    Peng Wensheng

    2015-08-01

    Full Text Available The random variables are always truncated in aerospace engineering and the truncated distribution is more feasible and effective for the random variables due to the limited samples available. For high-reliability aerospace mechanism with truncated random variables, a method based on artificial bee colony (ABC algorithm and line sampling (LS is proposed. The artificial bee colony-based line sampling (ABCLS method presents a multi-constrained optimization model to solve the potential non-convergence problem when calculating design point (is also as most probable point, MPP of performance function with truncated variables; by implementing ABC algorithm to search for MPP in the standard normal space, the optimization efficiency and global searching ability are increased with this method dramatically. When calculating the reliability of aerospace mechanism with too small failure probability, the Monte Carlo simulation method needs too large sample size. The ABCLS method could overcome this drawback. For reliability problems with implicit functions, this paper combines the ABCLS with Kriging response surface method, therefore could alleviate computational burden of calculating the reliability of complex aerospace mechanism. A numerical example and an engineering example are carried out to verify this method and prove the applicability.

  9. Computing the Moments of Order Statistics from Truncated Pareto Distributions Based on the Conditional Expectation

    Directory of Open Access Journals (Sweden)

    Gökhan Gökdere

    2014-05-01

    Full Text Available In this paper, closed form expressions for the moments of the truncated Pareto order statistics are obtained by using conditional distribution. We also derive some results for the moments which will be useful for moment computations based on ordered data.

  10. CONVERGENCE OF THE FRACTIONAL PARTS OF THE RANDOM VARIABLES TO THE TRUNCATED EXPONENTIAL DISTRIBUTION

    Directory of Open Access Journals (Sweden)

    Bogdan Gheorghe Munteanu

    2013-01-01

    Full Text Available Using the stochastic approximations, in this paper it was studiedthe convergence in distribution of the fractional parts of the sum of random variables to the truncated exponential distribution with parameter lambda. This fact is feasible by means of the Fourier-Stieltjes sequence (FSS of the random variable.

  11. Extracting the QCD Cutoff Parameter Using the Bernstein Polynomials and the Truncated Moments

    Directory of Open Access Journals (Sweden)

    A. Mirjalili

    2014-01-01

    Full Text Available Since there are not experimental data over the whole range of x-Bjorken variable, that is, 0truncated Mellin moments rather than the usual moments to analyse the EMC collaboration data for muon-nucleon and WA25 data for neutrino-deuterium DIS scattering. How to connect the truncated Mellin moments to usual ones is discussed. Following that we combine the truncated Mellin moments with the Bernstein polynomials. As a result, Bernstein averages which are related to different orders of the truncated Mellin moment are obtained. These averaged quantities can be considered as the constructed experimental data. By accessing the sufficient experimental data we can do the fitting more precisely. We do the fitting at leading order and next-to-leading order approximations to extract the QCD cutoff parameter. The results are in good agreement with what is being expected.

  12. Edgeworth expansion of the Studentized product-limit estimator for truncated and censored data

    Institute of Scientific and Technical Information of China (English)

    孙六全

    2000-01-01

    Based on random left truncated and right censored data we investigate the one-term Edgeworth expansion for the Studentized product-limit estimator, and show that the Edgeworth expan-sion is close to the exact distribution of the Studentized product-limit estimator with a remainder of

  13. Truncation effects in connected arrays: Analytical models to describe the edge-induced wave phenomena

    NARCIS (Netherlands)

    Neto, A.; Cavallo, D.; Gerini, G.

    2011-01-01

    This paper presents a Green's function based procedure to assess edge effects in finite wideband connected arrays. Truncation effects are more severe in broadband arrays, since the inter-element mutual coupling facilitates the propagation of edge-born waves that can become dominant over large portio

  14. Truncated matricial moment problems on a finite interval: the operator approach

    CERN Document Server

    Zagorodnyuk, Sergey M

    2009-01-01

    In this paper we obtain a description of all solutions of truncated matricial moment problems on a finite interval in a general case (no conditions besides solvability are assumed). We use the basic results of M.G. Krein and I.E. Ovcharenko about generalized sc-resolvents of Hermitian contractions.

  15. Scavenger receptor AI/II truncation, lung function and COPD: a large population-based study

    DEFF Research Database (Denmark)

    Thomsen, M; Nordestgaard, B G; Tybjærg-Hansen, Anne

    2011-01-01

    The scavenger receptor A-I/II (SRA-I/II) on alveolar macrophages is involved in recognition and clearance of modified lipids and inhaled particulates. A rare variant of the SRA-I/II gene, Arg293X, truncates the distal collagen-like domain, which is essential for ligand recognition. We tested whet...

  16. An empirical formula for yield estimation from singly truncated performance data of qualified semiconductor devices

    Institute of Scientific and Technical Information of China (English)

    Liang Tao; Jia Xinzhang

    2012-01-01

    The problem of yield estimation merely from performance test data of qualified semiconductor devices is studied.An empirical formula is presented to calculate the yield directly by the sample mean and standard deviation of singly truncated normal samples based on the theoretical relation between process capability indices and the yield.Firstly,we compare four commonly used normality tests under different conditions,and simulation results show that the Shapiro-Wilk test is the most powerful test in recognizing singly truncated normal samples.Secondly,the maximum likelihood estimation method and the empirical formula are compared by Monte Carlo simulation.The results show that the simple empirical formulas can achieve almost the same accuracy as the maximum likelihood estimation method but with a much lower amount of calculations when estimating yield from singly truncated normal samples.In addition,the empirical formula can also be used for doubly truncated normal samples when some specific conditions are met.Practical examples of yield estimation from academic and IC test data are given to verify the effectiveness of the proposed method.

  17. De Novo Truncating Variants in ASXL2 Are Associated with a Unique and Recognizable Clinical Phenotype

    NARCIS (Netherlands)

    Shashi, V.; Pena, L.D.; Kim, K.; Burton, B.; Hempel, M.; Schoch, K.; Walkiewicz, M.; McLaughlin, H.M.; Cho, M; Stong, N.; Hickey, S.E.; Shuss, C.M.; Freemark, M.S.; Bellet, J.S.; Keels, M.A.; Bonner, M.J.; El-Dairi, M.; Butler, M; Kranz, P.G.; Stumpel, C.T.; Klinkenberg, S.; Oberndorff, K.; Alawi, M.; Santer, R.; Petrovski, S.; Kuismin, O.; Korpi-Heikkila, S.; Pietilainen, O.; Aarno, P.; Kurki, M.I.; Hoischen, A.; Need, A.C.; Goldstein, D.B; Kortum, F.

    2016-01-01

    The ASXL genes (ASXL1, ASXL2, and ASXL3) participate in body patterning during embryogenesis and encode proteins involved in epigenetic regulation and assembly of transcription factors to specific genomic loci. Germline de novo truncating variants in ASXL1 and ASXL3 have been respectively implicated

  18. A new method to reduce truncation errors in partial spherical near-field measurements

    DEFF Research Database (Denmark)

    Cano-Facila, F J; Pivnenko, Sergey

    2011-01-01

    angular sector as well as a truncation error is present in the calculated far-field pattern within this sector. The method is based on the Gerchberg-Papoulis algorithm used to extrapolate functions and it is able to extend the valid region of the calculated far-field pattern up to the whole forward...

  19. Multivariate density estimation using dimension reducing information and tail flattening transformations for truncated or censored data

    DEFF Research Database (Denmark)

    Buch-Kromann, Tine; Nielsen, Jens

    2012-01-01

    This paper introduces a multivariate density estimator for truncated and censored data with special emphasis on extreme values based on survival analysis. A local constant density estimator is considered. We extend this estimator by means of tail flattening transformation, dimension reducing prio...

  20. An analysis of longitudinal data with nonignorable dropout using the truncated multivariate normal distribution

    NARCIS (Netherlands)

    Jolani, Shahab

    2014-01-01

    For a vector of multivariate normal when some elements, but not necessarily all, are truncated, we derive the moment generating function and obtain expressions for the first two moments involving the multivariate hazard gradient. To show one of many applications of these moments, we then extend the

  1. Consistent ${\\cal N}=8$ truncation of massive IIA on $S^6$

    CERN Document Server

    Guarino, Adolfo

    2015-01-01

    Massive type IIA supergravity is shown to admit a consistent truncation on the six-sphere to maximal supergravity in four dimensions with a dyonic ISO(7) gauging. We obtain the complete, non-linear embedding of all the $D=4$ fields into the IIA metric and form potentials, and show its consistency. We first rewrite the IIA theory in an $\\textrm{SO}(1,3) \\times \\textrm{SL}(7)$--covariant way. Then, we employ an ${\\cal N}=8$ SL(7)--covariant restriction of the $D=4$ tensor hierarchy in order to find the full embedding. The redundant $D=4$ degrees of freedom introduced by the tensor hierarchy can be eliminated by writing the embedding in terms of the field strengths and exploiting the restricted duality hierarchy. In particular, closed expressions for the Freund-Rubin term are found using this technique which reveal a pattern valid for other truncations. Finally, we show that the present ${\\cal N}=8$ truncation of massive IIA on $S^6$ and the ${\\cal N}=2$ truncation obtained when $S^6$ is equipped with its nearly...

  2. Phycobilisome truncation causes widespread proteome changes in Synechocystis sp. PCC 6803

    Science.gov (United States)

    Liberton, Michelle; Chrisler, William B.; Nicora, Carrie D.; Moore, Ronald J.; Smith, Richard D.; Koppenaal, David W.; Pakrasi, Himadri B.; Jacobs, Jon M.

    2017-01-01

    In cyanobacteria such as Synechocystis sp. PCC 6803, large antenna complexes called phycobilisomes (PBS) harvest light and transfer the energy to the photosynthetic reaction centers. Modification of the light harvesting machinery in cyanobacteria has widespread consequences, causing changes in cell morphology and physiology. In the current study, we investigated the effects of PBS truncation on the proteomes of three Synechocystis 6803 PBS antenna mutants. These range from the progressive truncation of phycocyanin rods in the CB and CK strains, to full removal of PBS in the PAL mutant. Comparative quantitative protein results revealed surprising changes in protein abundances in the mutant strains. Our results showed that PBS truncation in Synechocystis 6803 broadly impacted core cellular mechanisms beyond light harvesting and photosynthesis. Specifically, we observed dramatic alterations in membrane transport mechanisms, where the most severe PBS truncation in the PAL strain appeared to suppress the cellular utilization and regulation of bicarbonate and iron. These changes point to the role of PBS as a component critical to cell function, and demonstrate the continuing need to assess systems-wide protein based abundances to understand potential indirect phenotypic effects. PMID:28253354

  3. An iterative algorithm for soft tissue reconstruction from truncated flat panel projections

    Science.gov (United States)

    Langan, D.; Claus, B.; Edic, P.; Vaillant, R.; De Man, B.; Basu, S.; Iatrou, M.

    2006-03-01

    The capabilities of flat panel interventional x-ray systems continue to expand, enabling a broader array of medical applications to be performed in a minimally invasive manner. Although CT is providing pre-operative 3D information, there is a need for 3D imaging of low contrast soft tissue during interventions in a number of areas including neurology, cardiac electro-physiology, and oncology. Unlike CT systems, interventional angiographic x-ray systems provide real-time large field of view 2D imaging, patient access, and flexible gantry positioning enabling interventional procedures. However, relative to CT, these C-arm flat panel systems have additional technical challenges in 3D soft tissue imaging including slower rotation speed, gantry vibration, reduced lateral patient field of view (FOV), and increased scatter. The reduced patient FOV often results in significant data truncation. Reconstruction of truncated (incomplete) data is known an "interior problem", and it is mathematically impossible to obtain an exact reconstruction. Nevertheless, it is an important problem in 3D imaging on a C-arm to address the need to generate a 3D reconstruction representative of the object being imaged with minimal artifacts. In this work we investigate the application of an iterative Maximum Likelihood Transmission (MLTR) algorithm to truncated data. We also consider truncated data with limited views for cardiac imaging where the views are gated by the electrocardiogram(ECG) to combat motion artifacts.

  4. Phycobilisome truncation causes widespread proteome changes in Synechocystis sp. PCC 6803.

    Science.gov (United States)

    Liberton, Michelle; Chrisler, William B; Nicora, Carrie D; Moore, Ronald J; Smith, Richard D; Koppenaal, David W; Pakrasi, Himadri B; Jacobs, Jon M

    2017-01-01

    In cyanobacteria such as Synechocystis sp. PCC 6803, large antenna complexes called phycobilisomes (PBS) harvest light and transfer the energy to the photosynthetic reaction centers. Modification of the light harvesting machinery in cyanobacteria has widespread consequences, causing changes in cell morphology and physiology. In the current study, we investigated the effects of PBS truncation on the proteomes of three Synechocystis 6803 PBS antenna mutants. These range from the progressive truncation of phycocyanin rods in the CB and CK strains, to full removal of PBS in the PAL mutant. Comparative quantitative protein results revealed surprising changes in protein abundances in the mutant strains. Our results showed that PBS truncation in Synechocystis 6803 broadly impacted core cellular mechanisms beyond light harvesting and photosynthesis. Specifically, we observed dramatic alterations in membrane transport mechanisms, where the most severe PBS truncation in the PAL strain appeared to suppress the cellular utilization and regulation of bicarbonate and iron. These changes point to the role of PBS as a component critical to cell function, and demonstrate the continuing need to assess systems-wide protein based abundances to understand potential indirect phenotypic effects.

  5. Growth hormone action in rat insulinoma cells expressing truncated growth hormone receptors

    DEFF Research Database (Denmark)

    Møldrup, Annette; Allevato, G; Dyrberg, Thomas

    1991-01-01

    Transfection of the insulin-producing rat islet tumor cell line RIN-5AH with a full length cDNA of the rat hepatic growth hormone (GH) receptor (GH-R1-638) augments the GH-responsive insulin synthesis in these cells. Using this functional system we analyzed the effect of COOH-terminal truncation...

  6. Propagation of coherently combined truncated laser beam arrays with beam distortions in non-Kolmogorov turbulence.

    Science.gov (United States)

    Tao, Rumao; Si, Lei; Ma, Yanxing; Zhou, Pu; Liu, Zejin

    2012-08-10

    The propagation properties of coherently combined truncated laser beam arrays with beam distortions through non-Kolmogorov turbulence are studied in detail both analytically and numerically. The analytical expressions for the average intensity and the beam width of coherently combined truncated laser beam arrays with beam distortions propagating through turbulence are derived based on the combination of statistical optics methods and the extended Huygens-Fresnel principle. The effect of beam distortions, such as amplitude modulation and phase fluctuation, is studied by numerical examples. The numerical results reveal that phase fluctuations have significant influence on the spreading of coherently combined truncated laser beam arrays in non-Kolmogorov turbulence, and the effects of the phase fluctuations can be negligible as long as the phase fluctuations are controlled under a certain level, i.e., a>0.05 for the situation considered in the paper. Furthermore, large phase fluctuations can convert the beam distribution rapidly to a Gaussian form, vary the spreading, weaken the optimum truncation effects, and suppress the dependence of spreading on the parameters of the non-Kolmogorov turbulence.

  7. No evidence that protein truncating variants in BRIP1 are associated with breast cancer risk

    DEFF Research Database (Denmark)

    Easton, Douglas F; Lesueur, Fabienne; Decker, Brennan

    2016-01-01

    in BRIP1 are associated with an increased risk of breast cancer. These studies have led to inclusion of BRIP1 on targeted sequencing panels for breast cancer risk prediction. METHODS: We evaluated a truncating variant, p.Arg798Ter (rs137852986), and 10 missense variants of BRIP1, in 48 144 cases and 43...

  8. Truncated Hilbert space approach to the 2d $\\phi^{4}$ theory

    CERN Document Server

    Bajnok, Z

    2015-01-01

    We apply the massive analogue of the truncated conformal space approach to study the two dimensional $\\phi^{4}$ theory in finite volume. We focus on the broken phase and determine the finite size spectrum of the model numerically. We compare these results against semi-classical analysis and the Bethe-Yang spectrum.

  9. Microtremor measurements in the northern coast of İzmir Bay, Turkey to evaluate site-specific characteristics and fundamental periods by H/V spectral ratio method

    Indian Academy of Sciences (India)

    Tuğba Eskişar; Şenol Özyalin; Mehmet Kuruoğlu; H Recep Yilmaz

    2013-02-01

    Seventy-two microtremor measurements were conducted in the northern coast of İzmir Bay. The dataset has been processed using the horizontal-to-vertical spectral ratio. The fundamental period contour map obtained showed that the fundamental period at rock sites of the northern coast of İzmir Bay was between 0.15 and 0.35 s. However, the fundamental period increased towards the western direction where thick soft sediments exist, the fundamental period varied between 0.5 and 2.0 s. A soil classification map of the area was prepared based on the data estimated from SPT- values of 25 boreholes. It is seen that major portion of the study area, including the shore line of the northern coast had SPT- values lower than 15. The fundamental periods obtained by H/V spectral ratio method and the periods derived from shear wave velocity data available in 11 of 25 boreholes were well-correlated. Fundamental period map obtained from H/V spectral ratio method illustrated the characteristics of weak soil conditions and the presence of bedrock level under thick alluvial soils. Finally, microtremor investigations have proved to be an effective tool for assessment of local soil conditions in case of thick soft sediments in the northern coast of İzmir Bay.

  10. Bio-Safety Technology in Production of Bovine Herpesvirus Type 5 (BoHV-5 Using an Alternative Serum-Free Medium

    Directory of Open Access Journals (Sweden)

    Tereza C. Cardoso

    2007-01-01

    Full Text Available The detection and growth of bovine herpes virus type 5 (BoHV-5 was evaluated in three different media without foetal bovine serum or animal protein by infecting three different cell lines. The OPTI-PRO, VP-SFM and RPMI 1640 media were supplemented by L-glutamine, antibiotics added by 5µg of insulin-like growth factor (IGF-I and used to adapt CER, MDBK and CRIB cells in a statistic continuous culture system. The results obtained by CRIB and MDBK cells adaptation showed steady growth after 10th passages in OPTI-PRO medium, 20th passages in VP-SFM medium and 30th passages in RPMI 1640 medium, respectively. The OPTI-PRO and RPMI 1640 media were not able to support CER growth, even supplemented by IGF-1 and present apoptotic cells at 72h post-infection. The CER cells seeded after adaptation by 10th passages in VP-SFM medium added by 5µg/20ml of IGF-1 growth factor revealed the best virus titres compared to MDBK and CRIB cell lines. It was concluded that CER, MDBK and CRIB cells infected by BoHV-5 serotype could be used for laboratory diagnosis propagated on much safer culture system of high biotechnology advances.

  11. Residual Prolapse in Patients with III-IV Degree Haemorrhoids Undergoing Stapled Haemorrhoidopexy with CPH34 HV: Results of an Italian Multicentric Clinical Study

    Directory of Open Access Journals (Sweden)

    Giuliano Reboa

    2014-01-01

    Full Text Available CPH34 HV, a high volume stapler, was tested in order to assess its safety and efficacy in reducing residual/recurrent haemorrhoids. The clinical charts of 430 patients with third- to fourth-degree haemorrhoids undergoing SH in 2012-2013 were consecutively reviewed, excluding those with obstructed defecation (rectocele >2 cm; Wexner’s score >15. Follow-up was scheduled at six and 12 months. Rectal prolapse exceeding more than half of CAD was reported in 341 patients (79.3%; one technical failure was reported (0.2% without any serious untoward effect; and 1.3 stitch/patient (SD, 1.7 was required to achieve complete haemostasis. Doughnuts volume was higher (13.8 mL; SD, 1.5 in patients with a large rectal prolapse than with smaller one (8.9 mL; SD, 0.7 (P value <0.05. Residual and recurrent haemorrhoids occurred in 8 of 430 patients (1.8% and 5 of 254 patients (1.9%, respectively. A high index of patient satisfaction (visual analogue scale = 8.9; SD, 0.9 coupled with a persistent reduction of constipation scores (CSS = 5.0, SD, 2.2 was observed. The wider prolapse resection well correlated with a clear-cut reduction of haemorrhoidal relapse, a high index of patient satisfaction, and clinically relevant reduction of constipations scores coupled with satisfactory haemostatic properties of CPH34 HV.

  12. HvLUX1 is a candidate gene underlying the early maturity 10 locus in barley: phylogeny, diversity, and interactions with the circadian clock and photoperiodic pathways.

    Science.gov (United States)

    Campoli, Chiara; Pankin, Artem; Drosse, Benedikt; Casao, Cristina M; Davis, Seth J; von Korff, Maria

    2013-09-01

    Photoperiodic flowering is a major factor determining crop performance and is controlled by interactions between environmental signals and the circadian clock. We proposed Hvlux1, an ortholog of the Arabidopsis circadian gene LUX ARRHYTHMO, as a candidate underlying the early maturity 10 (eam10) locus in barley (Hordeum vulgare L.). The link between eam10 and Hvlux1 was discovered using high-throughput sequencing of enriched libraries and segregation analysis. We conducted functional, phylogenetic, and diversity studies of eam10 and HvLUX1 to understand the genetic control of photoperiod response in barley and to characterize the evolution of LUX-like genes within barley and across monocots and eudicots. We demonstrate that eam10 causes circadian defects and interacts with the photoperiod response gene Ppd-H1 to accelerate flowering under long and short days. The results of phylogenetic and diversity analyses indicate that HvLUX1 was under purifying selection, duplicated at the base of the grass clade, and diverged independently of LUX-like genes in other plant lineages. Taken together, these findings contribute to improved understanding of the barley circadian clock, its interaction with the photoperiod pathway, and evolution of circadian systems in barley and across monocots and eudicots.

  13. Study of built-in amplifier performance on HV-CMOS sensor for the ATLAS phase-II strip tracker upgrade

    Science.gov (United States)

    Liang, Z.; Affolder, A.; Arndt, K.; Bates, R.; Benoit, M.; Di Bello, F.; Blue, A.; Bortoletto, D.; Buckland, M.; Buttar, C.; Caragiulo, P.; Das, D.; Dopke, J.; Dragone, A.; Ehrler, F.; Fadeyev, V.; Galloway, Z.; Grabas, H.; Gregor, I. M.; Grenier, P.; Grillo, A.; Hoeferkamp, M.; Hommels, L. B. A.; Huffman, B. T.; John, J.; Kanisauskas, K.; Kenney, C.; Kramberger, J.; Mandić, I.; Maneuski, D.; Martinez-Mckinney, F.; McMahon, S.; Meng, L.; Mikuž, M.; Muenstermann, D.; Nickerson, R.; Peric, I.; Phillips, P.; Plackett, R.; Rubbo, F.; Segal, J.; Seidel, S.; Seiden, A.; Shipsey, I.; Song, W.; Stanitzki, M.; Su, D.; Tamma, C.; Turchetta, R.; Vigani, L.; Volk, J.; Wang, R.; Warren, M.; Wilson, F.; Worm, S.; Xiu, Q.; Zhang, J.; Zhu, H.

    2016-09-01

    This paper focuses on the performance of analog readout electronics (built-in amplifier) integrated on the high-voltage (HV) CMOS silicon sensor chip, as well as its radiation hardness. Since the total collected charge from minimum ionizing particle (MIP) for the CMOS sensor is 10 times lower than for a conventional planar sensor, it is crucial to integrate a low noise built-in amplifier on the sensor chip to improve the signal to noise ratio of the system. As part of the investigation for the ATLAS strip detector upgrade, a test chip that comprises several pixel arrays with different geometries, as well as standalone built-in amplifiers and built-in amplifiers in pixel arrays has been fabricated in a 0.35 μm high-voltage CMOS process. Measurements of the gain and the noise of both the standalone amplifiers and built-in amplifiers in pixel arrays were performed before and after gamma radiation of up to 60 Mrad. Of special interest is the variation of the noise as a function of the sensor capacitance. We optimized the configuration of the amplifier for a fast rise time to adapt to the LHC bunch crossing period of 25 ns, and measured the timing characteristics including jitter. Our results indicate an adequate amplifier performance for monolithic structures used in HV-CMOS technology. The results have been incorporated in the next submission of a large-structure chip.

  14. Polyphasic characterization of poly-3-hydroxybutyrate-co-3-hydroxyvalerate (p(HB-co-HV)) metabolizing and denitrifying Acidovorax sp. strains.

    Science.gov (United States)

    Schloe, K; Gillis, M; Hoste, B; Pot, B; Vancanneyt, M; Mergaert, J; Swings, J; Biedermann, J; Süssmuth, R

    2000-10-01

    For the purpose of denitrification in small drinking water plants, a bacterial mixed population was isolated from a packed bed column bioreactor with poly-3-hydroxybutyrate-co-3-hydroxyvalerate (P(HB-co-HV)) as a substrate for the denitrification of ground water (10 degrees C). Isolates 2nIII from the mixed culture, with the ability to denitrify and metabolize P(HB-co-HV), were used as starter cultures for the elimination of nitrate in ground water. The strains were characterized by diverse techniques. Classical phenotypic studies lead to rRNA group III of the genus Pseudomonas. Results obtained by molecular techniques demonstrated that the 2nIII strains are members of the Comamonadaceae and shows similarities to the genus Acidovorax. However, an integration of the 2nIII isolates within one of the known Acidovorax species is not possible for the moment. The 2nIII starter cultures clustered close to Av. temperans according to their whole cell proteins and fatty acids, whereas in DNA/DNA hybridization no significant DNA binding (< 25%) was found. In contrast a significant but low degree of DNA/DNA hybridization was found between the 2nIII strains and Av. facilis and Av. delafieldii. Our polyphasic results lead to the conclusion that the 2nIII strains may constitute a separate Acicdovorax species.

  15. Role of the suppressor of cytokine signaling 2 (SOCS2) during meningoencephalitis caused by Bovine herpesvirus 5 (BoHV-5).

    Science.gov (United States)

    Aparecida Silva Barbosa, Aline; Freitas Versiani, Alice; Fonseca da Cunha Sousa, Larissa; Silva de Miranda, Aline; Gasparini, Marcela Ribeiro; Brant, Fátima; Silva, Daniele Gonçalves; Luisa Quintino-de-Carvalho, Iracema; Marianetti Soriani, Frederico; Guimarães da Fonseca, Flávio; César Vasconcelos, Anilton; da Silva Barcelos, Lucíola; Martins Teixeira, Mauro; Lúcio Teixeira, Antônio; Machado, Fabiana Simão; Barbosa-Stancioli, Edel Figueiredo; Rachid, Milene Alvarenga

    2016-08-01

    The role of suppressors of cytokine signaling (SOCS) in meningoencephalitis caused by Bovine herpesvirus 5 (BoHV-5) was evaluated by intracranial infection in C57BL/6 wild-type mice (WT) and SOCS2 deficient mice (SOCS2(-/-)). Both infected groups presented weight loss, ruffled fur and hunched posture. Additionally, infected SOCS2(-/-) mice showed swollen chamfer and progressive depression. Infected WT animals developed mild meningitis, characterized by infiltration of mononuclear cells. Moreover, viral DNA was detected in liver and lung from infected WT group. This group also showed elevated brain levels of IFN-γ, IL-10, CXCL1 and CCL5, when compared with non-infected WT animals. Brain inflammation was exacerbated in infected SOCS2(-/-) mice with widespread distribution of the virus and increased brain levels of TNF-α, IFN-γ, IL-10, IL-12, CXCL1 and CCL5, when compared with WT infected mice. Moreover, infected SOCS2 deficient mice exhibited reduced brain mRNA expression of IFNα and IFNβ and increased expression of mRNA of SOCS1, compared with infected WT mice. Taken together, our study provides an insight into the role of SOCS2 in modulating the immune response to BoHV-5 infection. Copyright © 2016 Elsevier Ltd. All rights reserved.

  16. Residual Prolapse in Patients with III-IV Degree Haemorrhoids Undergoing Stapled Haemorrhoidopexy with CPH34 HV: Results of an Italian Multicentric Clinical Study.

    Science.gov (United States)

    Reboa, Giuliano; Gipponi, Marco; Rattaro, Andrea; Ciotta, Giovanni; Tarantello, Marco; Caviglia, Angelo; Pagliazzo, Antonio; Masoni, Luigi; Caldarelli, Giuseppe; Gaj, Fabio; Masci, Bruno; Verdi, Andrea

    2014-01-01

    CPH34 HV, a high volume stapler, was tested in order to assess its safety and efficacy in reducing residual/recurrent haemorrhoids. The clinical charts of 430 patients with third- to fourth-degree haemorrhoids undergoing SH in 2012-2013 were consecutively reviewed, excluding those with obstructed defecation (rectocele >2 cm; Wexner's score >15). Follow-up was scheduled at six and 12 months. Rectal prolapse exceeding more than half of CAD was reported in 341 patients (79.3%); one technical failure was reported (0.2%) without any serious untoward effect; and 1.3 stitch/patient (SD, 1.7) was required to achieve complete haemostasis. Doughnuts volume was higher (13.8 mL; SD, 1.5) in patients with a large rectal prolapse than with smaller one (8.9 mL; SD, 0.7) (P value <0.05). Residual and recurrent haemorrhoids occurred in 8 of 430 patients (1.8%) and 5 of 254 patients (1.9%), respectively. A high index of patient satisfaction (visual analogue scale = 8.9; SD, 0.9) coupled with a persistent reduction of constipation scores (CSS = 5.0, SD, 2.2) was observed. The wider prolapse resection well correlated with a clear-cut reduction of haemorrhoidal relapse, a high index of patient satisfaction, and clinically relevant reduction of constipations scores coupled with satisfactory haemostatic properties of CPH34 HV.

  17. Study of built-in amplifier performance on HV-CMOS sensor for the ATLAS phase-II strip tracker upgrade

    Energy Technology Data Exchange (ETDEWEB)

    Liang, Z., E-mail: zhijun.liang@cern.ch [University of California Santa Cruz, Santa Cruz Institute for Particle Physics (SCIPP) (United States); Institute of High Energy Physics, Beijing (China); Affolder, A. [University of Liverpool (United Kingdom); Arndt, K. [University of Oxford (United Kingdom); Bates, R. [SUPA – School of Physics and Astronomy, University of Glasgow, Glasgow (United Kingdom); Benoit, M.; Di Bello, F. [University of Geneva (Switzerland); Blue, A. [SUPA – School of Physics and Astronomy, University of Glasgow, Glasgow (United Kingdom); Bortoletto, D. [University of Oxford (United Kingdom); Buckland, M. [University of Liverpool (United Kingdom); CERN, European Center for Nuclear Research (Switzerland); Buttar, C. [SUPA – School of Physics and Astronomy, University of Glasgow, Glasgow (United Kingdom); Caragiulo, P. [SLAC National Accelerator Laboratory (United States); Das, D.; Dopke, J. [Rutherford Appleton Laboratory, Didcot (United Kingdom); Dragone, A. [SLAC National Accelerator Laboratory (United States); Ehrler, F. [Karlsruhe Institute of Technology (Germany); Fadeyev, V.; Galloway, Z.; Grabas, H. [University of California Santa Cruz, Santa Cruz Institute for Particle Physics (SCIPP) (United States); Gregor, I.M. [Deutsches Elektronen-Synchrotron (Germany); Grenier, P. [SLAC National Accelerator Laboratory (United States); and others

    2016-09-21

    This paper focuses on the performance of analog readout electronics (built-in amplifier) integrated on the high-voltage (HV) CMOS silicon sensor chip, as well as its radiation hardness. Since the total collected charge from minimum ionizing particle (MIP) for the CMOS sensor is 10 times lower than for a conventional planar sensor, it is crucial to integrate a low noise built-in amplifier on the sensor chip to improve the signal to noise ratio of the system. As part of the investigation for the ATLAS strip detector upgrade, a test chip that comprises several pixel arrays with different geometries, as well as standalone built-in amplifiers and built-in amplifiers in pixel arrays has been fabricated in a 0.35 μm high-voltage CMOS process. Measurements of the gain and the noise of both the standalone amplifiers and built-in amplifiers in pixel arrays were performed before and after gamma radiation of up to 60 Mrad. Of special interest is the variation of the noise as a function of the sensor capacitance. We optimized the configuration of the amplifier for a fast rise time to adapt to the LHC bunch crossing period of 25 ns, and measured the timing characteristics including jitter. Our results indicate an adequate amplifier performance for monolithic structures used in HV-CMOS technology. The results have been incorporated in the next submission of a large-structure chip.

  18. Soil characterization in urban areas of the Bajo Segura Basin (Southeast Spain) using H/V, F-K and ESAC methods

    Science.gov (United States)

    Rosa-Cintas, S.; Galiana-Merino, J. J.; Molina-Palacios, S.; Rosa-Herranz, J.; García-Fernández, M.; Jiménez, M. J.

    2011-11-01

    Bajo Segura Basin, placed in the south of Alicante province (southeast Spain), is a region of moderate seismicity, which presents frequent seismic episodes. This region, as the rest of south-eastern part of Spain, is growing both economically and demographically. Hence, the presence of soft soils in a seismic region where many towns and villages are placed shows the importance of an adequate characterization of the site effects study in this area. The present work investigates the use of noise measurements for soil characterization by the application of H/V method and array techniques: extended spatial autocorrelation (ESAC) and frequency-wave number (F-K) in three urban areas of the Bajo Segura Basin. The application of these methods will help us to estimate the resonance frequencies, as well as shear-wave velocity profiles, having a better understanding of the sediment depth and site effects phenomena at the studied places. The estimated velocity profiles are used to model the fundamental mode Rayleigh wave ellipticity curves and the S-wave site transfer functions. Finally, the correlation between this curves and the experimental H/V analysis has allowed us a better assessment of the site response in the studied areas.

  19. Mobile radio channels

    CERN Document Server

    Pätzold, Matthias

    2011-01-01

    Providing a comprehensive overview of the modelling, analysis and simulation of mobile radio channels, this book gives a detailed understanding of fundamental issues and examines state-of-the-art techniques in mobile radio channel modelling. It analyses several mobile fading channels, including terrestrial and satellite flat-fading channels, various types of wideband channels and advanced MIMO channels, providing a fundamental understanding of the issues currently being investigated in the field. Important classes of narrowband, wideband, and space-time wireless channels are explored in deta

  20. Recurrence relations for the moments of order statistics from doubly truncated modified Makeham distribution and its characterization

    Directory of Open Access Journals (Sweden)

    Ali A. Ismail

    2014-07-01

    Full Text Available In this study a general form of recurrence relations of continuous function for doubly truncated modified Makeham distribution is obtained. Recurrence relations between single and product moments of order statistics from doubly truncated modified Makeham distribution are given. Also, a characterization of modified Makeham distribution from the right and the left is discussed through the properties of order statistics.