WorldWideScience

Sample records for highly similar citations

  1. Deja vu: a database of highly similar citations in the scientific literature.

    Science.gov (United States)

    Errami, Mounir; Sun, Zhaohui; Long, Tara C; George, Angela C; Garner, Harold R

    2009-01-01

    In the scientific research community, plagiarism and covert multiple publications of the same data are considered unacceptable because they undermine the public confidence in the scientific integrity. Yet, little has been done to help authors and editors to identify highly similar citations, which sometimes may represent cases of unethical duplication. For this reason, we have made available Déjà vu, a publicly available database of highly similar Medline citations identified by the text similarity search engine eTBLAST. Following manual verification, highly similar citation pairs are classified into various categories ranging from duplicates with different authors to sanctioned duplicates. Déjà vu records also contain user-provided commentary and supporting information to substantiate each document's categorization. Déjà vu and eTBLAST are available to authors, editors, reviewers, ethicists and sociologists to study, intercept, annotate and deter questionable publication practices. These tools are part of a sustained effort to enhance the quality of Medline as 'the' biomedical corpus. The Déjà vu database is freely accessible at http://spore.swmed.edu/dejavu. The tool eTBLAST is also freely available at http://etblast.org.

  2. High Citation of Iranian Coauthored articles in comparison with single authored ones: does it link with self-citation

    Directory of Open Access Journals (Sweden)

    Seaid Nazarian

    2012-10-01

    Full Text Available The aim of this research was to investigate the effect of co-authorship and self-citation on the citation rates of Iranian indexed articles in Web of Science (WoS. Research population included Iranian indexed articles in WoS in 2007 which had been received at least one citation. Numbers of articles in the time of research (October & November 2010 was 7355, which 390 of them, using stratified random sampling, was selected as sample. Research results showed that co-authored articles have received more citations than single-authored ones and this difference was statistically significant. On the other hand, self-citation exclusion has significantly reduced the citation rates of both co-authored and single-authored articles. After self-citation exclusion, existing difference between citation rates of co-authored and single-authored articles lost its significance. So, it can be concluded that self-citation exclusion led to reduction of citation rates of Iranian indexed articles in WoS, but this exclusion affected co-authored articles citation rates more than single-authored ones. In other words, high citation of Iranian co-authored articles in comparison with single-authored articles has been affected mainly by self-citation, not by foreign citation. This finding, which was our contribution, contradicted with results of previous researches.

  3. Data Citation Services in the High-Energy Physics Community

    CERN Document Server

    Herterich, Patricia

    2016-01-01

    A paradigm change in scholarly communication is underway. Supporting Open Science, an effort to make scientific research data accessible to all interested parties by openly publishing research and encouraging others to do the same thereby making it easier to communicate scientific knowledge, is a part of the change that has become increasingly important for (digital) libraries. Digital libraries are able to play a significant role in enabling Open Science by facilitating data sharing, discovery and re-use. Because data citation is often mentioned as one incentive for data sharing, enabling data citation is a crucial feature of research data services. In this article we present a case study of data citation services for the High-Energy Physics (HEP) community using digital library technology. Our example shows how the concept of data citation is implemented for the complete research workflow, covering data production, publishing, citation and tracking of data reuse. We also describe challenges faced and distil...

  4. Annotated bibliography on high-intensity linear accelerators. [240 citations

    Energy Technology Data Exchange (ETDEWEB)

    Jameson, R.A.; Roybal, E.U.

    1978-01-01

    A technical bibliography covering subjects important to the design of high-intensity beam transport systems and linear accelerators is presented. Space charge and emittance growth are stressed. Subject and author concordances provide cross-reference to detailed citations, which include an abstract and notes on the material. The bibliography resides in a computer database that can be searched for key words and phrases.

  5. Citation Rate of Highly-Cited Papers in 100 Kinesiology-Related Journals

    Science.gov (United States)

    Knudson, Duane

    2015-01-01

    This study extended previous research on several citation-based bibliometric variables for highly cited articles in a large (N = 100) number of journals related to Kinesiology. Total citations and citation rate of the 30 most highly cited articles in each journal were identified by searchers of "Google Scholar (GS)". Other major…

  6. Highly Cited Occupational Therapy Articles in the Science Citation Index Expanded and Social Sciences Citation Index: A Bibliometric Analysis.

    Science.gov (United States)

    Brown, Ted; Gutman, Sharon A; Ho, Yuh-Shan; Fong, Kenneth N K

    A bibliometric analysis was completed of highly cited occupational therapy literature and authors published from 1991 to 2014 and accessible in the Science Citation Index Expanded (SCI-Expanded) and Social Sciences Citation Index (SSCI) databases. Data were obtained from the SCI-Expanded and SSCI. Articles referenced >100 times were categorized as highly cited articles (HCA). Of 6,486 articles found, 31 were categorized as HCA. The American Journal of Occupational Therapy published the largest number of HCA (n = 8; 26%). The 31 HCA were distributed across seven countries: United States (20 articles), Canada (3), United Kingdom (3), Australia (2), the Netherlands (1), New Zealand (1), and Sweden (1). The three authors with the highest Y-index were S. J. Page, F. Clark, and W. Dunn. A latency period of 4 to 5 yr post-publication appears to be needed for a journal article to gain citations.

  7. A simple index for the high-citation tail of citation distribution to quantify research performance in countries and institutions.

    Directory of Open Access Journals (Sweden)

    Alonso Rodríguez-Navarro

    Full Text Available BACKGROUND: Conventional scientometric predictors of research performance such as the number of papers, citations, and papers in the top 1% of highly cited papers cannot be validated in terms of the number of Nobel Prize achievements across countries and institutions. The purpose of this paper is to find a bibliometric indicator that correlates with the number of Nobel Prize achievements. METHODOLOGY/PRINCIPAL FINDINGS: This study assumes that the high-citation tail of citation distribution holds most of the information about high scientific performance. Here I propose the x-index, which is calculated from the number of national articles in the top 1% and 0.1% of highly cited papers and has a subtractive term to discount highly cited papers that are not scientific breakthroughs. The x-index, the number of Nobel Prize achievements, and the number of national articles in Nature or Science are highly correlated. The high correlations among these independent parameters demonstrate that they are good measures of high scientific performance because scientific excellence is their only common characteristic. However, the x-index has superior features as compared to the other two parameters. Nobel Prize achievements are low frequency events and their number is an imprecise indicator, which in addition is zero in most institutions; the evaluation of research making use of the number of publications in prestigious journals is not advised. CONCLUSION: The x-index is a simple and precise indicator for high research performance.

  8. Citation Success

    DEFF Research Database (Denmark)

    Vaio, Gianfranco Di; Waldenström, Daniel; Weisdorf, Jacob Louis

    2012-01-01

    This study examines the determinants of citation success among authors who have recently published their work in economic history journals. Besides offering clues about how to improve one's scientific impact, our citation analysis also sheds light on the state of the field of economic history....... Consistent with our expectations, we find that full professors, authors appointed at economics and history departments, and authors working in Anglo-Saxon and German countries are more likely to receive citations than other scholars. Long and co-authored articles are also a factor for citation success. We...... find similar patterns when assessing the same authors' citation success in economics journals. As a novel feature, we demonstrate that the diffusion of research — publication of working papers, as well as conference and workshop presentations — has a first-order positive impact on the citation rate....

  9. Does a Long Reference List Guarantee More Citations? Analysis of Malaysian Highly Cited and Review Papers

    OpenAIRE

    Ale Ebrahim, Nader; Ebrahimian, H.; Mousavi, Maryam; Tahriri, Farzad

    2015-01-01

    Earlier publications have shown that the number of references as well as the number of received citations are field-dependent. Consequently, a long reference list may lead to more citations. The purpose of this article is to study the concrete relationship between number of references and citation counts. This article tries to find an answer for the concrete case of Malaysian highly cited papers and Malaysian review papers. Malaysian paper is a paper with at least one Malaysian affiliation. A...

  10. The highly-cited Electrocardiogram-related articles in science citation index expanded: characteristics and hotspots.

    Science.gov (United States)

    Yang, Xianglin; Gu, Jiaojiao; Yan, Hong; Xu, Zhi; Ren, Bing; Yang, Yaming; Yang, Xiaodong; Chen, Qi; Tan, Shaohua

    2014-01-01

    We used bibliometric analysis methodology in the expanded Science Citation Index to identify highly-cited electrocardiogram (ECG)-related articles with total citations (TC2012) exceeding 100 from the publication year to 2012. Web of Science search tools were used to identify the highly-cited articles. The aspects analyzed for highly cited publications included effect of time on citation analysis, journals and Web of Science categories, number of authors per publication, originating institutions and countries, total citation and total citation per year life cycles of articles (C2012) and research hotspots. Results showed that a total of 467 electrocardiogram-related publications were regarded as the highly-cited publications. TC2012 ranged from 101 to 2879, with 215 as the average number of citations. No highly-cited publications have emerged yet during the first two years of the present 2010 Decade. All 11 countries and institutions originating highly-cited ECG-related publications were developed countries, USA in 9 of them. Four subject categories were identified as hotspots by total citations TC2012 and C2012: atrial fibrillation, long QT syndrome, angina and myocardial infarction, and risk factor analysis and health evaluation. Copyright © 2014 Elsevier Inc. All rights reserved.

  11. Aberration of the Citation.

    Science.gov (United States)

    Moustafa, Khaled

    2016-01-01

    Multiple inherent biases related to different citation practices (for e.g., self-citations, negative citations, wrong citations, multi-authorship-biased citations, honorary citations, circumstantial citations, discriminatory citations, selective and arbitrary citations, etc.) make citation-based bibliometrics strongly flawed and defective measures. A paper can be highly cited for a while (for e.g., under circumstantial or transitional knowledge), but years later it may appear that its findings, paradigms, or theories were untrue or invalid anymore. By contrast, a paper may remain shelved or overlooked for years or decades, but new studies or discoveries may actualize its subject at any moment. As citation-based metrics are transformed into "commercial activities," the "citation credit" should be considered on a commercial basis too, in the sense that "citation credit" should be shared out as a "citation dividend" by shareholders (coauthors) averagely or proportionally to their contributions but not fully appropriated by each of them. At equal numbers of citations, the greater number of authors, the lower "citation credit" should be and vice versa. Overlooking the presence of distorted and subjective citation practices makes many people and administrators "obsessed" with the number of citations to such an extent to run after "highly cited" authors and to create specialized citation databases for commercial purposes. Citation-based bibliometrics, however, are unreliable and unscientific measures; citation counts do not mean that a more cited work is of a higher quality or accuracy than a less cited work because citations do not measure the quality or accuracy. Citations do not mean that a highly cited author or journal is more commendable than a less cited author or journal. Citations are not more than countable numbers: no more, no less.

  12. Causes of Low and High Citation Potentials in Science: Citation Analysis of Biochemistry and Plant Physiology Journals.

    Science.gov (United States)

    Marton, Janos

    1983-01-01

    Citation data of 16 biochemistry and plant physiology journals show that reasons for lower citation potentials of plant physiology articles are: (1) readership is narrower for plant physiology journals; (2) plant physiologists can cite fewer thematically relevant new articles; and (3) plant physiology research fields are more isolated. References…

  13. Clicks versus Citations: Click Count as a Metric in High Energy Physics Publishing

    Energy Technology Data Exchange (ETDEWEB)

    Bitton, Ayelet; /UC, San Diego /SLAC

    2011-06-22

    High-energy physicists worldwide rely on online resources such as SPIRES and arXiv to perform gather research and share their own publications. SPIRES is a tool designed to search the literature within high-energy physics, while arXiv provides the actual full-text documents of this literature. In high-energy physics, papers are often ranked according to the number of citations they acquire - meaning the number of times a later paper references the original. This paper investigates the correlation between the number of times a paper is clicked in order to be downloaded and the number of citations it receives following the click. It explores how physicists truly read what they cite.

  14. Reference citation

    National Research Council Canada - National Science Library

    Brkić, Silvija

    2013-01-01

    .... This paper deals with different styles of reference citation. Special emphasis was placed on the Vancouver Style for reference citation in biomedical journals established by the International Committee of Medical Journal Editors...

  15. Citation Behavior

    DEFF Research Database (Denmark)

    Frandsen, Tove Faber; Nicolaisen, Jeppe

    2017-01-01

    Citation frequencies are commonly interpreted as measures of quality or impact. Yet, the true nature of citations and their proper interpretation have been the center of a long, but still unresolved discussion in Bibliometrics. A comparison of 67,578 pairs of studies on the same healthcare topic......, with the same publication age (1–15 years) reveals that when one of the studies is being selected for citation, it has on average received about three times as many citations as the other study. However, the average citation-gap between selected or deselected studies narrows slightly over time, which fits...

  16. Citation Success

    DEFF Research Database (Denmark)

    Di Vaio, Gianfranco; Waldenström, Daniel; Weisdorf, Jacob Louis

    This study analyses determinants of citation success among authors publishing in economic history journals. Bibliometric features, like article length and number of authors, are positively correlated with the citation rate up to a certain point. Remarkably, publishing in top-ranked journals hardly...... affects citations. In regard to author-specific characteristics, male authors, full professors and authors working economics or history departments, and authors employed in Anglo-Saxon countries, are more likely to get cited than others. As a ‘shortcut' to citation success, we find that research diffusion...

  17. Researchers' perceptions of citations

    NARCIS (Netherlands)

    Aksnes, Dag W.; Rip, Arie

    2009-01-01

    This paper looks at how citations are perceived among scientists. Based on a questionnaire survey it traces the repertoire of views and experiences about citations that could be found among Norwegian scientists that had published highly cited papers. Their views circle around three issues: the

  18. High-ranked social science journal articles can be identified from early citation information.

    Science.gov (United States)

    Stern, David I

    2014-01-01

    Do citations accumulate too slowly in the social sciences to be used to assess the quality of recent articles? I investigate whether this is the case using citation data for all articles in economics and political science published in 2006 and indexed in the Web of Science. I find that citations in the first two years after publication explain more than half of the variation in cumulative citations received over a longer period. Journal impact factors improve the correlation between the predicted and actual future ranks of journal articles when using citation data from 2006 alone but the effect declines sharply thereafter. Finally, more than half of the papers in the top 20% in 2012 were already in the top 20% in the year of publication (2006).

  19. Citation Behavior

    DEFF Research Database (Denmark)

    Frandsen, Tove Faber; Nicolaisen, Jeppe

    2017-01-01

    Citation frequencies are commonly interpreted as measures of quality or impact. Yet, the true nature of citations and their proper interpretation have been the center of a long, but still unresolved discussion in Bibliometrics. A comparison of 67,578 pairs of studies on the same healthcare topic,...

  20. Citation ranking versus peer evaluation of senior faculty research performance

    DEFF Research Database (Denmark)

    Meho, Lokman I.; Sonnenwald, Diane H.

    2000-01-01

    indicator of research performance of senior faculty members? Citation data, book reviews, and peer ranking were compiled and examined for faculty members specializing in Kurdish studies. Analysis shows that normalized citation ranking and citation content analysis data yield identical ranking results....... Analysis also shows that normalized citation ranking and citation content analysis, book reviews, and peer ranking perform similarly (i.e., are highly correlated) for high-ranked and low-ranked senior scholars. Additional evaluation methods and measures that take into account the context and content......The purpose of this study is to analyze the relationship between citation ranking and peer evaluation in assessing senior faculty research performance. Other studies typically derive their peer evaluation data directly from referees, often in the form of ranking. This study uses two additional...

  1. Inspection Citations

    Data.gov (United States)

    U.S. Department of Health & Human Services — Disclosure of reporting citations provide the public with a rationale for the Agency’s enforcement actions and will also help to inform public and industry...

  2. Men set their own cites high: Gender and self-citation across fields and over time

    CERN Document Server

    King, Molly M; Correll, Shelley J; Jacquet, Jennifer; West, Jevin D

    2016-01-01

    How common is self-citation in scholarly publication and does the practice vary by gender? Using novel methods and a dataset of 1.5 million research papers in the scholarly database JSTOR published between 1779-2011, we find that nearly 10% of references are self-citations by a paper's authors. We further find that over the years between 1779-2011, men cite their own papers 56% more than women do. In the last two decades of our data, men self-cite 70% more than women. Women are also more than ten percentage points more likely than men to not cite their own previous work at all. Despite increased representation of women in academia, this gender gap in self-citation rates has remained stable over the last 50 years. We break down self-citation patterns by academic field and number of authors, and comment on potential mechanisms behind these observations. These findings have important implications for scholarly visibility and likely consequences for academic careers.

  3. Modeling the citation network by network cosmology.

    Science.gov (United States)

    Xie, Zheng; Ouyang, Zhenzheng; Zhang, Pengyuan; Yi, Dongyun; Kong, Dexing

    2015-01-01

    Citation between papers can be treated as a causal relationship. In addition, some citation networks have a number of similarities to the causal networks in network cosmology, e.g., the similar in-and out-degree distributions. Hence, it is possible to model the citation network using network cosmology. The casual network models built on homogenous spacetimes have some restrictions when describing some phenomena in citation networks, e.g., the hot papers receive more citations than other simultaneously published papers. We propose an inhomogenous causal network model to model the citation network, the connection mechanism of which well expresses some features of citation. The node growth trend and degree distributions of the generated networks also fit those of some citation networks well.

  4. Modeling the citation network by network cosmology.

    Directory of Open Access Journals (Sweden)

    Zheng Xie

    Full Text Available Citation between papers can be treated as a causal relationship. In addition, some citation networks have a number of similarities to the causal networks in network cosmology, e.g., the similar in-and out-degree distributions. Hence, it is possible to model the citation network using network cosmology. The casual network models built on homogenous spacetimes have some restrictions when describing some phenomena in citation networks, e.g., the hot papers receive more citations than other simultaneously published papers. We propose an inhomogenous causal network model to model the citation network, the connection mechanism of which well expresses some features of citation. The node growth trend and degree distributions of the generated networks also fit those of some citation networks well.

  5. Density-based retrieval from high-similarity image databases

    DEFF Research Database (Denmark)

    Hansen, Michael Edberg; Carstensen, Jens Michael

    2004-01-01

    Many image classification problems can fruitfully be thought of as image retrieval in a "high similarity image database" (HSID) characterized by being tuned towards a specific application and having a high degree of visual similarity between entries that should be distinguished. We introduce...... a method for HSID retrieval using a similarity measure based on a linear combination of Jeffreys-Matusita distances between distributions of local (pixelwise) features estimated from a set of automatically and consistently defined image regions. The weight coefficients are estimated based on optimal...... retrieval performance. Experimental results on the difficult task of visually identifying clones of fungal colonies grown in a petri dish and categorization of pelts show a high retrieval accuracy of the method when combined with standardized sample preparation and image acquisition....

  6. Efficient estimation for high similarities using odd sketches

    DEFF Research Database (Denmark)

    Mitzenmacher, Michael; Pagh, Rasmus; Pham, Ninh Dang

    2014-01-01

    . This means that Odd Sketches provide a highly space-efficient estimator for sets of high similarity, which is relevant in applications such as web duplicate detection, collaborative filtering, and association rule learning. The method extends to weighted Jaccard similarity, relevant e.g. for TF-IDF vector...... comparison. We present a theoretical analysis of the quality of estimation to guarantee the reliability of Odd Sketch-based estimators. Our experiments confirm this efficiency, and demonstrate the efficiency of Odd Sketches in comparison with $b$-bit minwise hashing schemes on association rule learning...

  7. Citation classics in epilepsy

    Directory of Open Access Journals (Sweden)

    Maryann Wilson

    2013-01-01

    Full Text Available BACKGROUND: The impact of a scientific article is proportional to the citations it has received. In this study, we set out to identify the most cited works in epileptology in order to evaluate research trends in this field. METHODS: According to the Web of Science database, articles with more than 400 citations qualify as "citation classics". We conducted a literature search on the ISI Web of Science bibliometric database for scientific articles relevant to epilepsy. RESULTS: We retrieved 67 highly cited articles (400 or more citations, which were published in 31 journals: 17 clinical studies, 42 laboratory studies, 5 reviews and 3 classification articles. Clinical studies consisted of epidemiological analyses (n=3, studies on the clinical phenomenology of epilepsy (n=5 – including behavioral and prognostic aspects – and articles focusing on pharmacological (n=6 and non-pharmacological (n=3 treatment. The laboratory studies dealt with genetics (n=6, animal models (n=27, and neurobiology (n=9 – including both neurophysiology and neuropathology studies. The majority (61% of citation classics on epilepsy were published after 1986, possibly reflecting the expansion of research interest in laboratory studies driven by the development of new methodologies, specifically in the fields of genetics and animal models. Consequently, clinical studies were highly cited both before and after the mid 80s, whilst laboratory researches became widely cited after 1990. CONCLUSIONS: Our study indicates that the main drivers of scientific impact in the field of epileptology have increasingly become genetic and neurobiological studies, along with research on animal models of epilepsy. These articles are able to gain the highest numbers of citations in the time span of a few years and suggest potential directions for future research.

  8. Adaptive Sampling for High Throughput Data Using Similarity Measures

    Energy Technology Data Exchange (ETDEWEB)

    Bulaevskaya, V. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Sales, A. P. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

    2015-05-06

    The need for adaptive sampling arises in the context of high throughput data because the rates of data arrival are many orders of magnitude larger than the rates at which they can be analyzed. A very fast decision must therefore be made regarding the value of each incoming observation and its inclusion in the analysis. In this report we discuss one approach to adaptive sampling, based on the new data point’s similarity to the other data points being considered for inclusion. We present preliminary results for one real and one synthetic data set.

  9. Author Self-Citation in the Otolaryngology Literature: A Pilot Study.

    Science.gov (United States)

    Tolisano, Anthony M; Song, Sungjin A; Cable, Benjamin B

    2016-02-01

    To determine the prevalence of author self-citation in the field of otolaryngology. A retrospective review of bibliographic references in 5 otolaryngology journals. Five high-impact otolaryngology journals were reviewed over a 3-month period between January and March 2014 to identify the pattern of author self-citations. Data included study type, otolaryngology topic, authorship, total citations, author self-citations, and country of origin. Nearly two-thirds of articles contained at least 1 self-citation, with an average of 2.6 self-citations per article. Self-citations represented nearly 10% of total citations. Articles with at least 1 self-citation had more authors (5.8 vs 4.9, P otolaryngology literature is common and compares similarly to other medical specialties previously studied. Self-citation should not be considered inappropriate, as it is often done to expand on earlier research. Nevertheless, editors, researchers, and readers should be aware of this increasingly recognized phenomenon and its associated potential implications to the process of scientific inquiry. © American Academy of Otolaryngology—Head and Neck Surgery Foundation 2015.

  10. Highly cited articles in health care sciences and services field in Science Citation Index Expanded. A bibliometric analysis for 1958 - 2012.

    Science.gov (United States)

    Hsu, Y-H E; Ho, Y-S

    2014-01-01

    This study aimed to identify and analyze characteristics of highly cited articles published in the Web of Science category of health care sciences and services from 1958 to 2012. Articles that have been cited at least 100 times were assessed regarding publication outputs, distribution of outputs in journals, publications of authors, institutions, countries as well as citation life cycles of the articles with the highest total citations since its publication up to 2012 and the highest citations in 2012. Six bibliometric indicators were used to evaluate source countries, institutions, and authors. Total citations from the time the articles were first published to the end of 2012 and citations in 2012 only were applied. Additionally, Y-index was applied to evaluate publication characteristics of authors. A high percentage of authors had the same numbers of first author and corresponding author status of highly cited articles in health care sciences and services field. RESULTS showed that 890 of the most highly referenced articles, published between 1977 and 2009, had been cited at least 100 times. Medical Care and Journal of General Internal Medicine published the most highly cited articles. The United States produced 76% of highly cited articles and also published the most number of independent, internationally collaborative, first authored, corresponding authored, and single author highly cited articles. The Harvard University was the most productive institute and was number one for the total highly cited articles, inter-institutionally collaborative articles, single institution articles, first author articles, and corresponding author articles. The application of quantitative techniques in the analysis of highly cited articles can improve the researchers' understanding of the directions in health care sciences and services field. Y-index is useful for the evaluation of contributing authors.

  11. The measurement of the effect on citation inequality of differences in citation practices across scientific fields.

    Science.gov (United States)

    Crespo, Juan A; Li, Yunrong; Li, Yungrong; Ruiz-Castillo, Javier

    2013-01-01

    This paper has two aims: (i) to introduce a novel method for measuring which part of overall citation inequality can be attributed to differences in citation practices across scientific fields, and (ii) to implement an empirical strategy for making meaningful comparisons between the number of citations received by articles in 22 broad fields. The number of citations received by any article is seen as a function of the article's scientific influence, and the field to which it belongs. A key assumption is that articles in the same quantile of any field citation distribution have the same degree of citation impact in their respective field. Using a dataset of 4.4 million articles published in 1998-2003 with a five-year citation window, we estimate that differences in citation practices between the 22 fields account for 14% of overall citation inequality. Our empirical strategy is based on the strong similarities found in the behavior of citation distributions. We obtain three main results. Firstly, we estimate a set of average-based indicators, called exchange rates, to express the citations received by any article in a large interval in terms of the citations received in a reference situation. Secondly, using our exchange rates as normalization factors of the raw citation data reduces the effect of differences in citation practices to, approximately, 2% of overall citation inequality in the normalized citation distributions. Thirdly, we provide an empirical explanation of why the usual normalization procedure based on the fields' mean citation rates is found to be equally successful.

  12. Is quality and completeness of reporting of systematic reviews and meta-analyses published in high impact radiology journals associated with citation rates?

    Science.gov (United States)

    van der Pol, Christian B; McInnes, Matthew D F; Petrcich, William; Tunis, Adam S; Hanna, Ramez

    2015-01-01

    The purpose of this study is to determine whether study quality and completeness of reporting of systematic reviews (SR) and meta-analyses (MA) published in high impact factor (IF) radiology journals is associated with citation rates. All SR and MA published in English between Jan 2007-Dec 2011, in radiology journals with an IF >2.75, were identified on Ovid MEDLINE. The Assessing the Methodologic Quality of Systematic Reviews (AMSTAR) checklist for study quality, and the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) checklist for study completeness, was applied to each SR & MA. Each SR & MA was then searched in Google Scholar to yield a citation rate. Spearman correlation coefficients were used to assess the relationship between AMSTAR and PRISMA results with citation rate. Multivariate analyses were performed to account for the effect of journal IF and journal 5-year IF on correlation with citation rate. Values were reported as medians with interquartile range (IQR) provided. 129 studies from 11 journals were included (50 SR and 79 MA). Median AMSTAR result was 8.0/11 (IQR: 5-9) and median PRISMA result was 23.0/27 (IQR: 21-25). The median citation rate for SR & MA was 0.73 citations/month post-publication (IQR: 0.40-1.17). There was a positive correlation between both AMSTAR and PRISMA results and SR & MA citation rate; ρ=0.323 (P=0.0002) and ρ=0.327 (P=0.0002) respectively. Positive correlation persisted for AMSTAR and PRISMA results after journal IF was partialed out; ρ=0.243 (P=0.006) and ρ=0.256 (P=0.004), and after journal 5-year IF was partialed out; ρ=0.235 (P=0.008) and ρ=0.243 (P=0.006) respectively. There is a positive correlation between the quality and the completeness of a reported SR or MA with citation rate which persists when adjusted for journal IF and journal 5-year IF.

  13. Visibility and Citation Impact

    Science.gov (United States)

    Ebrahim, Nader Ale; Salehi, Hadi; Embi, Mohamed Amin; Tanha, Farid Habibi; Gholizadeh, Hossein; Motahar, Seyed Mohammad

    2014-01-01

    The number of publications is the first criteria for assessing a researcher output. However, the main measurement for author productivity is the number of citations, and citations are typically related to the paper's visibility. In this paper, the relationship between article visibility and the number of citations is investigated. A case study of…

  14. Sharing data increases citations

    DEFF Research Database (Denmark)

    Drachen, Thea Marie; Ellegaard, Ole; Larsen, Asger Væring

    2016-01-01

    This paper presents some indications to the existence of a citation advantage related to sharing data using astrophysics as a case. Through bibliometric analyses we find a citation advantage for astrophysical papers in core journals. The advantage arises as indexed papers are associated with data...... by bibliographical links, and consists of papers receiving on average significantly more citations per paper per year, than do papers not associated with links to data....

  15. An increasing citation black hole in ecology and evolution.

    Science.gov (United States)

    Rafferty, Anthony R; Wong, Bob B M; Chapple, David G

    2015-01-01

    Citations published in online supplementary material (OSM) are invisible to search engines used to calculate citation counts, potentially negatively impacting popular performance indices and journal rankings that rely on citation counts for quantification. To quantify the number of citations that are "lost" in OSM, we conducted a systematic survey of supplementary citation practices in four high-ranking, society-run journals from two geographical locations (Europe and North America). In 2012, 6% of all citations were only included in the OSM and were therefore not included in citation counts. We found a significant increase in the number of references invisible to citation counting services over the last two decades. A solution to this problem is urgently required and could include journal indexing of citations in OSM or the inclusion of all references in the main text.

  16. Homophily and missing links in citation networks

    CERN Document Server

    Ciotti, Valerio; Nicosia, Vincenzo; Panzarasa, Pietro; Latora, Vito

    2015-01-01

    Citation networks have been widely used to study the evolution of science through the lenses of the underlying patterns of knowledge flows among academic papers, authors, research sub-fields, and scientific journals. Here we focus on citation networks to cast light on the salience of homophily, namely the principle that similarity breeds connection, for knowledge transfer between papers. To this end, we assess the degree to which citations tend to occur between papers that are concerned with seemingly related topics or research problems. Drawing on a large data set of articles published in the journals of the American Physical Society between 1893 and 2009, we propose a novel method for measuring the similarity between articles through the statistical validation of the overlap between their bibliographies. Results suggest that the probability of a citation made by one article to another is indeed an increasing function of the similarity between the two articles. Our study also enables us to uncover missing ci...

  17. Citations Prize 2011 Citations Prize 2011

    Science.gov (United States)

    Webb, Steve; Harris, Simon

    2011-12-01

    Physics in Medicine & Biology (PMB) awards its 'Citations Prize' to the authors of the original research paper that has received the most citations in the preceding five years (according to the Institute for Scientific Information (ISI)). The lead author of the winning paper is presented with the Rotblat Medal (named in honour of Professor Sir Joseph Rotblat who was the second—and longest serving—Editor of PMB, from 1961-1972). The winning co-authors each receive a certificate. Susan Hagness (left) receiving the Rotblat Medal from Robert Jeraj of PMB's Editorial Board (right) on behalf of Mariya Lazebnik. The winner of the 2011 Citations Prize for the paper which has received the most citations in the previous 5 years (2006-2010) is A large-scale study of the ultrawideband microwave dielectric properties of normal, benign and malignant breast tissues obtained from cancer surgeries Authors: Mariya Lazebnik, Dijana Popovic, Leah McCartney, Cynthia B Watkins, Mary J Lindstrom, Josephine Harter, Sarah Sewall, Travis Ogilvie, Anthony Magliocco, Tara M Breslin, Walley Temple, Daphne Mew, John H Booske, Michal Okoniewski and Susan C Hagness Reference: Mariya Lazebnik et al 2007 Phys. Med. Biol. 52 6093-115 Discussion of the significance of the winning paper can be found on medicalphysicsweb (medicalphysicsweb.org/cws/article/research/47814). Our congratulations go to the winning authors. Steve Webb Editor-in-Chief Simon Harris Publisher

  18. Comparing Medline citations using modified N-grams

    Science.gov (United States)

    Nawab, Rao Muhammad Adeel; Stevenson, Mark; Clough, Paul

    2014-01-01

    Objective We aim to identify duplicate pairs of Medline citations, particularly when the documents are not identical but contain similar information. Materials and methods Duplicate pairs of citations are identified by comparing word n-grams in pairs of documents. N-grams are modified using two approaches which take account of the fact that the document may have been altered. These are: (1) deletion, an item in the n-gram is removed; and (2) substitution, an item in the n-gram is substituted with a similar term obtained from the Unified Medical Language System  Metathesaurus. N-grams are also weighted using a score derived from a language model. Evaluation is carried out using a set of 520 Medline citation pairs, including a set of 260 manually verified duplicate pairs obtained from the Deja Vu database. Results The approach accurately detects duplicate Medline document pairs with an F1 measure score of 0.99. Allowing for word deletions and substitution improves performance. The best results are obtained by combining scores for n-grams of length 1–5 words. Discussion Results show that the detection of duplicate Medline citations can be improved by modifying n-grams and that high performance can also be obtained using only unigrams (F1=0.959), particularly when allowing for substitutions of alternative phrases. PMID:23715801

  19. Comparing Medline citations using modified N-grams.

    Science.gov (United States)

    Nawab, Rao Muhammad Adeel; Stevenson, Mark; Clough, Paul

    2014-01-01

    We aim to identify duplicate pairs of Medline citations, particularly when the documents are not identical but contain similar information. Duplicate pairs of citations are identified by comparing word n-grams in pairs of documents. N-grams are modified using two approaches which take account of the fact that the document may have been altered. These are: (1) deletion, an item in the n-gram is removed; and (2) substitution, an item in the n-gram is substituted with a similar term obtained from the Unified Medical Language System Metathesaurus. N-grams are also weighted using a score derived from a language model. Evaluation is carried out using a set of 520 Medline citation pairs, including a set of 260 manually verified duplicate pairs obtained from the Deja Vu database. The approach accurately detects duplicate Medline document pairs with an F1 measure score of 0.99. Allowing for word deletions and substitution improves performance. The best results are obtained by combining scores for n-grams of length 1-5 words. Results show that the detection of duplicate Medline citations can be improved by modifying n-grams and that high performance can also be obtained using only unigrams (F1=0.959), particularly when allowing for substitutions of alternative phrases.

  20. Exploiting citation networks for large-scale author name disambiguation

    CERN Document Server

    Schulz, Christian; Petersen, Alexander M; Penner, Orion; Helbing, Dirk

    2014-01-01

    We present a novel algorithm and validation method for disambiguating author names in very large bibliographic data sets and apply it to the full Web of Science (WoS) citation index. Our algorithm relies only upon on the author and citation graphs available for the whole period covered by the WoS. A pair-wise publication similarity metric, which is based on common co-authors, self-citations, shared references and citations, is established to perform a two-step agglomerative clustering that first connects linked papers and then merges similar clusters. This parameterized model is optimized towards an h-index based recall, which favors the inclusion of well-cited publications, and a name-initials-based precision using WoS metadata and cross-referenced Google Scholar profiles. Despite the use of limited metadata, we reach a recall of 87% and a precision of 88% with a preference for researchers with high $h$-index values. 47 million articles of WoS can be disambiguated on a single machine in less than a day. We d...

  1. Data reuse and the open data citation advantage.

    Science.gov (United States)

    Piwowar, Heather A; Vision, Todd J

    2013-01-01

    Background. Attribution to the original contributor upon reuse of published data is important both as a reward for data creators and to document the provenance of research findings. Previous studies have found that papers with publicly available datasets receive a higher number of citations than similar studies without available data. However, few previous analyses have had the statistical power to control for the many variables known to predict citation rate, which has led to uncertain estimates of the "citation benefit". Furthermore, little is known about patterns in data reuse over time and across datasets. Method and Results. Here, we look at citation rates while controlling for many known citation predictors and investigate the variability of data reuse. In a multivariate regression on 10,555 studies that created gene expression microarray data, we found that studies that made data available in a public repository received 9% (95% confidence interval: 5% to 13%) more citations than similar studies for which the data was not made available. Date of publication, journal impact factor, open access status, number of authors, first and last author publication history, corresponding author country, institution citation history, and study topic were included as covariates. The citation benefit varied with date of dataset deposition: a citation benefit was most clear for papers published in 2004 and 2005, at about 30%. Authors published most papers using their own datasets within two years of their first publication on the dataset, whereas data reuse papers published by third-party investigators continued to accumulate for at least six years. To study patterns of data reuse directly, we compiled 9,724 instances of third party data reuse via mention of GEO or ArrayExpress accession numbers in the full text of papers. The level of third-party data use was high: for 100 datasets deposited in year 0, we estimated that 40 papers in PubMed reused a dataset by year 2, 100 by

  2. Data reuse and the open data citation advantage

    Directory of Open Access Journals (Sweden)

    Heather A. Piwowar

    2013-10-01

    Full Text Available Background. Attribution to the original contributor upon reuse of published data is important both as a reward for data creators and to document the provenance of research findings. Previous studies have found that papers with publicly available datasets receive a higher number of citations than similar studies without available data. However, few previous analyses have had the statistical power to control for the many variables known to predict citation rate, which has led to uncertain estimates of the “citation benefit”. Furthermore, little is known about patterns in data reuse over time and across datasets. Method and Results. Here, we look at citation rates while controlling for many known citation predictors and investigate the variability of data reuse. In a multivariate regression on 10,555 studies that created gene expression microarray data, we found that studies that made data available in a public repository received 9% (95% confidence interval: 5% to 13% more citations than similar studies for which the data was not made available. Date of publication, journal impact factor, open access status, number of authors, first and last author publication history, corresponding author country, institution citation history, and study topic were included as covariates. The citation benefit varied with date of dataset deposition: a citation benefit was most clear for papers published in 2004 and 2005, at about 30%. Authors published most papers using their own datasets within two years of their first publication on the dataset, whereas data reuse papers published by third-party investigators continued to accumulate for at least six years. To study patterns of data reuse directly, we compiled 9,724 instances of third party data reuse via mention of GEO or ArrayExpress accession numbers in the full text of papers. The level of third-party data use was high: for 100 datasets deposited in year 0, we estimated that 40 papers in PubMed reused a

  3. Data reuse and the open data citation advantage

    Science.gov (United States)

    Vision, Todd J.

    2013-01-01

    Background. Attribution to the original contributor upon reuse of published data is important both as a reward for data creators and to document the provenance of research findings. Previous studies have found that papers with publicly available datasets receive a higher number of citations than similar studies without available data. However, few previous analyses have had the statistical power to control for the many variables known to predict citation rate, which has led to uncertain estimates of the “citation benefit”. Furthermore, little is known about patterns in data reuse over time and across datasets. Method and Results. Here, we look at citation rates while controlling for many known citation predictors and investigate the variability of data reuse. In a multivariate regression on 10,555 studies that created gene expression microarray data, we found that studies that made data available in a public repository received 9% (95% confidence interval: 5% to 13%) more citations than similar studies for which the data was not made available. Date of publication, journal impact factor, open access status, number of authors, first and last author publication history, corresponding author country, institution citation history, and study topic were included as covariates. The citation benefit varied with date of dataset deposition: a citation benefit was most clear for papers published in 2004 and 2005, at about 30%. Authors published most papers using their own datasets within two years of their first publication on the dataset, whereas data reuse papers published by third-party investigators continued to accumulate for at least six years. To study patterns of data reuse directly, we compiled 9,724 instances of third party data reuse via mention of GEO or ArrayExpress accession numbers in the full text of papers. The level of third-party data use was high: for 100 datasets deposited in year 0, we estimated that 40 papers in PubMed reused a dataset by year 2

  4. Non-Traffic Citations

    Data.gov (United States)

    Allegheny County / City of Pittsburgh / Western PA Regional Data Center — Non-traffic citations (NTCs, also known as "summary offenses") document low-level criminal offenses where a law enforcement officer or other authorized official...

  5. Application of progressive nucleation mechanism for the citation behavior of individual papers of different authors.

    Science.gov (United States)

    Sangwal, Keshra

    2012-09-01

    The basic concepts and equations of the progressive nucleation mechanism (PNM) are presented first for the growth and decay of items. The mechanism is then applied to describe the cumulative citations L and citations ΔL per year of the individual most-cited papers i of four selected Polish professors as a function of citation duration t. It was found that the PNM satisfactorily describes the time dependence of cumulative citations L of the papers published by different authors with sufficiently high citations ΔL, as represented by the highest yearly citations ΔL(max) during the entire citation period t (normal citation behavior). The citation period for these papers is less than 15 years and it is even 6-8 years in several cases. However, for papers with citation periods exceeding about 15 years, the growth behavior of citations does not follow the PNM in the entire citation period (anomalous citation behavior), and there are regions of citations in which the citation data may be described by the PNM. Normal and anomalous citation behaviors are attributed, respectively, to the occurrence and nonoccurrence of stationary nucleation of citations for the papers. The PNM also explains the growth and decay of citations ΔL per year of papers exhibiting normal citation behavior.

  6. Artifactual increase in journal self-citation.

    Science.gov (United States)

    Tighe, Patrick; Rice, Kevin J; Gravenstein, Nikolaus; Rice, Mark J

    2011-08-01

    After submission of a manuscript to a peer-reviewed anesthesia journal, several authors were asked to cite additional references from the journal to which they submitted. We hypothesized that there were differences among the anesthesiology journals in both the total number of self-citations and the proportion of self-citations to the total number of references in each manuscript for the years 2005 and 2010. We conducted a review of a sample of manuscripts from 2005 and 2010 to examine the number and rate of self-citations. As a secondary analysis, we reviewed impact factor (IF), rate of self-referencing, and contribution of self-citations to IF in the population of manuscripts published in 8 anesthesia journals between 2000 and 2009 using the ISI Journal Citation Reports. The number (P citations among the different journals were significantly different in 2005, with similar results for 2010 in the number (P citations. The mean range of number of self-citations ranged from 0.45 (95% confidence interval [CI], 0.06 to 0.84) to 3.95 (95% CI, 2.2 to 5.7) in 2005 and from 0.25 (95% CI, -0.05 to 0.55) to 4.5 (95% CI, 2.2 to 6.9) in 2010. On a per-journal basis, no difference in the number of self-citations was noted between 2005 and 2010. Analysis of the ISI Journal Citation Reports from 2000 to 2009 suggested a general decline in the contribution of self-cites to the IF over time for the aggregate journals (Spearman correlation coefficient (Rs) -0.25 (95% CI, -0.45 to -0.03), P = 0.02), with the exception of the journal in question (Rs = 0.59 (95% CI, -0.1 to 0.88), P = 0.05). Positive correlations were found between self-cited rate and IF (Rs 0.52, 95% CI, 0.34 to 0.66, P citations differed among anesthesia journals, the contribution of self-citation to IF has declined over time for most anesthesia journals. These results suggest periodic reassessment may be important to ensure that the publication process remains transparent and impartial to bias.

  7. Author self-citation in the general medicine literature.

    Science.gov (United States)

    Kulkarni, Abhaya V; Aziz, Brittany; Shams, Iffat; Busse, Jason W

    2011-01-01

    Author self-citation contributes to the overall citation count of an article and the impact factor of the journal in which it appears. Little is known, however, about the extent of self-citation in the general clinical medicine literature. The objective of this study was to determine the extent and temporal pattern of author self-citation and the article characteristics associated with author self-citation. We performed a retrospective cohort study of articles published in three high impact general medical journals (JAMA, Lancet, and New England Journal of Medicine) between October 1, 1999 and March 31, 2000. We retrieved the number and percentage of author self-citations received by the article since publication, as of June 2008, from the Scopus citation database. Several article characteristics were extracted by two blinded, independent reviewers for each article in the cohort and analyzed in multivariable linear regression analyses. Since publication, author self-citations accounted for 6.5% (95% confidence interval 6.3-6.7%) of all citations received by the 328 articles in our sample. Self-citation peaked in 2002, declining annually thereafter. Studies with more authors, in cardiovascular medicine or infectious disease, and with smaller sample size were associated with more author self-citations and higher percentage of author self-citation (all p≤0.01). Approximately 1 in 15 citations of articles in high-profile general medicine journals are author self-citations. Self-citation peaks within about 2 years of publication and disproportionately affects impact factor. Studies most vulnerable to this effect are those with more authors, small sample size, and in cardiovascular medicine or infectious disease.

  8. Citation Analysis: Definitions and Applications

    Directory of Open Access Journals (Sweden)

    Amirhossein Abdoulmajid

    2007-04-01

    Full Text Available Citations hold a special place within scientific literature. In fact a scientific paper is deemed credible only when it cites the relevant works and papers on the subject. Citation analysis is a method based on the existing citations within scientific literature. It analyses and evaluates works by counting the number of citations used in different texts such as journals, dissertations and such. The emergence of citation indices has contributed to the remarkable growth and development of citation analysis, making it a significant research area over the past couple of decades. The present paper deals with the importance of citations and citation theories. Definitions and historical background on citation analysis as well as its various field applications are discussed.

  9. Citation Classics in "Suicide and Life Threatening Behavior": A Research Note

    Science.gov (United States)

    Stack, Steven

    2012-01-01

    The number of citations a scholarly work receives is a common measure of its impact on the scientific literature; "citation classics" are the most highly cited works. The content of "Suicide and Life-Threatening Behavior" ("SLTB") citation classics is described here. The impact of "SLTB" citation classics is compared to their counterparts in…

  10. Turning the Tables on Citation Analysis One More Time: Principles for Comparing Sets of Documents

    NARCIS (Netherlands)

    Leydesdorff, Loet; Bornmann, Lutz; Mutz, Ruediger; Opthof, Tobias

    2011-01-01

    We submit newly developed citation impact indicators based not on arithmetic averages of citations but on percentile ranks. Citation distributions are-as a rule-highly skewed and should not be arithmetically averaged. With percentile ranks, the citation score of each paper is rated in terms of its

  11. Turning the tables in citation analysis one more time: principles for comparing sets of documents

    NARCIS (Netherlands)

    Leydesdorff, L.; Bornmann, L.; Mutz, R.; Opthof, T.

    2011-01-01

    We submit newly developed citation impact indicators based not on arithmetic averages of citations but on percentile ranks. Citation distributions are-as a rule-highly skewed and should not be arithmetically averaged. With percentile ranks, the citation score of each paper is rated in terms of its

  12. The citation impact outside references - formal versus informal citations

    OpenAIRE

    Marx, Werner; Cardona, Manuel

    2007-01-01

    In this study the amount of informal citations (i.e. those mentioning only author names or their initials instead of the complete references) in comparison to the formal (full reference based) citations is analyzed using some pioneers of chemistry and physics as examples. The data reveal that the formal citations often measure only a small fraction of the overall impact of seminal publications. Furthermore, informal citations are mainly given instead of (and not in addition to) formal citatio...

  13. The dynamics of patent citations

    OpenAIRE

    Marco, Alan C.

    2006-01-01

    The use of patent citations as a measure of patent "quality" increased dramatically in recent years. I estimate the hazard of patent citation, and find evidence of unobserved heterogeneity. Hazard estimation provides a means to separate patent quality from citation "inflation."

  14. Analysis of Scifinder Scholar and Web of Science Citation Searches.

    Science.gov (United States)

    Whitley, Katherine M.

    2002-01-01

    With "Chemical Abstracts" and "Science Citation Index" both now available for citation searching, this study compares the duplication and uniqueness of citing references for works of chemistry researchers for the years 1999-2001. The two indexes cover very similar source material. This analysis of SciFinder Scholar and Web of…

  15. A generalized view of self-citation: direct, co-author, collaborative, and coercive induced self-citation.

    Science.gov (United States)

    Ioannidis, John P A

    2015-01-01

    The phenomenon of self-citation can present in many different forms, including direct, co-author, collaborative, and coercive induced self-citation. It can also pertain to the citation of single scientists, groups of scientists, journals, and institutions. This article presents some case studies of extreme self-citation practices. It also discusses the implications of different types of self-citation. Self-citation is not necessarily inappropriate by default. In fact, usually it is fully appropriate but often it is even necessary. Conversely, inappropriate self-citation practices may be highly misleading and may distort the scientific literature. Coercive induced self-citation is the most difficult to discover. Coercive Induced self-citation may happen directly from reviewers of articles, but also indirectly from reviewers of grants, scientific advisors who steer a research agenda, and leaders of funding agencies who may espouse spending disproportionately large funds in research domains that perpetuate their own self-legacy. Inappropriate self-citation can be only a surrogate marker of what might be much greater distortions of the scientific corpus towards conformity to specific opinions and biases. Inappropriate self-citations eventually affect also impact metrics. Different impact metrics vary in the extent to which they can be gamed through self-citation practices. Citation indices that are more gaming-proof are available and should be more widely used. We need more empirical studies to dissect the impact of different types of inappropriate self-citation and to examine the effectiveness of interventions to limit them. Copyright © 2014. Published by Elsevier Inc.

  16. Annual Journal citation indices: a comparative study

    CERN Document Server

    Khaleque, Abdul; Sen, Parongama

    2016-01-01

    We study the statistics of citations made to the indexed Science journals in the Journal Citation Reports during the period 2004-2013 using different measures. We consider different measures which quantify the impact of the journals. To our surprise, we find that the apparently uncorrelated measures, even when defined in an arbitrary manner, show strong correlations. This is checked over all the years considered. Impact factor being one of these measures, the present work raises the question whether it is actually a nearly perfect index as claimed often. In addition we study the distributions of the different indices which also behave similarly.

  17. Similarity of High-Resolution Tandem Mass Spectrometry Spectra of Structurally Related Micropollutants and Transformation Products

    Science.gov (United States)

    Schollée, Jennifer E.; Schymanski, Emma L.; Stravs, Michael A.; Gulde, Rebekka; Thomaidis, Nikolaos S.; Hollender, Juliane

    2017-12-01

    High-resolution tandem mass spectrometry (HRMS2) with electrospray ionization is frequently applied to study polar organic molecules such as micropollutants. Fragmentation provides structural information to confirm structures of known compounds or propose structures of unknown compounds. Similarity of HRMS2 spectra between structurally related compounds has been suggested to facilitate identification of unknown compounds. To test this hypothesis, the similarity of reference standard HRMS2 spectra was calculated for 243 pairs of micropollutants and their structurally related transformation products (TPs); for comparison, spectral similarity was also calculated for 219 pairs of unrelated compounds. Spectra were measured on Orbitrap and QTOF mass spectrometers and similarity was calculated with the dot product. The influence of different factors on spectral similarity [e.g., normalized collision energy (NCE), merging fragments from all NCEs, and shifting fragments by the mass difference of the pair] was considered. Spectral similarity increased at higher NCEs and highest similarity scores for related pairs were obtained with merged spectra including measured fragments and shifted fragments. Removal of the monoisotopic peak was critical to reduce false positives. Using a spectral similarity score threshold of 0.52, 40% of related pairs and 0% of unrelated pairs were above this value. Structural similarity was estimated with the Tanimoto coefficient and pairs with higher structural similarity generally had higher spectral similarity. Pairs where one or both compounds contained heteroatoms such as sulfur often resulted in dissimilar spectra. This work demonstrates that HRMS2 spectral similarity may indicate structural similarity and that spectral similarity can be used in the future to screen complex samples for related compounds such as micropollutants and TPs, assisting in the prioritization of non-target compounds. [Figure not available: see fulltext.

  18. An analysis of the citation climate in neurosurgical literature and description of an interfield citation metric.

    Science.gov (United States)

    Madhugiri, Venkatesh S; Sasidharan, Gopalakrishnan M; Subeikshanan, Venkatesan; Dutt, Akshat; Ambekar, Sudheer; Strom, Shane F

    2015-05-01

    The citation climate in neurosurgical literature is largely undefined. To study the patterns of citation of articles in neurosurgery as a scientific field and to evaluate the performance of neurosurgery journals vis-à-vis journals in other fields. References cited in articles published in neurosurgery journals during a specified time period were analyzed to determine the age of articles cited in neurosurgical literature. In the next analysis, articles published in neurosurgical journals were followed up for 13 years after publication. The postpublication citation patterns were analyzed to determine the time taken to reach the maximally cited state and the time when articles stopped being cited. The final part of the study dealt with the evolution of a new interfield citation metric, which was then compared with other standardized citation indexes. The mean ± SD age of articles cited in neurosurgical literature was 11.6 ± 11.7 years (median, 8 years). Citations received by articles gradually increased to a peak (at 6.25 years after publication in neurosurgery) and then reached a steady state; articles were still cited well into the late postpublication period. Neurosurgical articles published in nonneurosurgical high-impact journals were cited more highly than those in neurosurgical journals, although they took approximately the same time to reach the maximally cited state (7.2 years). The most cited pure neurosurgery journal was Neurosurgery. The citation climate for neurosurgery was adequately described. The interfield citation metric was able to ensure cross-field comparability of journal performance. G1, group 1G2, group 2G3, group 3G4, group 4IFCM, interfield citation metric.

  19. Lovely but dangerous: The impact of patent citations on patent duration

    OpenAIRE

    Maurseth, Per Botolf

    2001-01-01

    - What is the impact of patent citations on patent renewal behaviour? Patent citations are commonly used as an indicator of technology spillovers. For cited patents therefore, patent citations have a potentially ambiguous impact. On the one hand, patent citations may indicate a scientific breakthrough, a high value of the cited patent and therefore a long survival period. On the other hand, patent citations may indicate competing innovations that render the cited patent obsolete. By discri...

  20. Color-Based Image Retrieval from High-Similarity Image Databases

    DEFF Research Database (Denmark)

    Hansen, Michael Adsetts Edberg

    Many image classification problems can fruitfully be thought of as image retrieval in a "high similarity image database" (HSID) characterized by being tuned towards a specific application and having a high degree of visual similarity between entries that should be distinguished. We introduce...... a method for HSID retrieval using a similarity measure based on a linear combination of Jeffreys-Matusita (JM) distances between distributions of color (and color derivatives) estimated from a set of automatically extracted image regions. The weight coefficients are estimated based on optimal retrieval...

  1. Color-Based Image Retrieval from High-Similarity Image Databases

    DEFF Research Database (Denmark)

    Hansen, Michael Adsetts Edberg; Carstensen, Jens Michael

    2003-01-01

    Many image classification problems can fruitfully be thought of as image retrieval in a "high similarity image database" (HSID) characterized by being tuned towards a specific application and having a high degree of visual similarity between entries that should be distinguished. We introduce...... a method for HSID retrieval using a similarity measure based on a linear combination of Jeffreys-Matusita (JM) distances between distributions of color (and color derivatives) estimated from a set of automatically extracted image regions. The weight coefficients are estimated based on optimal retrieval...

  2. Characterizing and Modeling Citation Dynamics

    Science.gov (United States)

    Eom, Young-Ho; Fortunato, Santo

    2011-01-01

    Citation distributions are crucial for the analysis and modeling of the activity of scientists. We investigated bibliometric data of papers published in journals of the American Physical Society, searching for the type of function which best describes the observed citation distributions. We used the goodness of fit with Kolmogorov-Smirnov statistics for three classes of functions: log-normal, simple power law and shifted power law. The shifted power law turns out to be the most reliable hypothesis for all citation networks we derived, which correspond to different time spans. We find that citation dynamics is characterized by bursts, usually occurring within a few years since publication of a paper, and the burst size spans several orders of magnitude. We also investigated the microscopic mechanisms for the evolution of citation networks, by proposing a linear preferential attachment with time dependent initial attractiveness. The model successfully reproduces the empirical citation distributions and accounts for the presence of citation bursts as well. PMID:21966387

  3. Characterizing and modeling citation dynamics.

    Science.gov (United States)

    Eom, Young-Ho; Fortunato, Santo

    2011-01-01

    Citation distributions are crucial for the analysis and modeling of the activity of scientists. We investigated bibliometric data of papers published in journals of the American Physical Society, searching for the type of function which best describes the observed citation distributions. We used the goodness of fit with Kolmogorov-Smirnov statistics for three classes of functions: log-normal, simple power law and shifted power law. The shifted power law turns out to be the most reliable hypothesis for all citation networks we derived, which correspond to different time spans. We find that citation dynamics is characterized by bursts, usually occurring within a few years since publication of a paper, and the burst size spans several orders of magnitude. We also investigated the microscopic mechanisms for the evolution of citation networks, by proposing a linear preferential attachment with time dependent initial attractiveness. The model successfully reproduces the empirical citation distributions and accounts for the presence of citation bursts as well.

  4. Incites into Citation Linking using the OAI-PMH

    CERN Multimedia

    CERN. Geneva

    2005-01-01

    deposit process. This highly-distributed approach to citation linking utilises the OAI-PMH to transfer structured citation data between IRs and citation indexing services. OpenURL - a standard for contextual linking using bibliographic data - is now a NISO standard. As well as it's linking role, OpenURL is a useful standard for the transfer of bibliographic data for the purposes of...

  5. Distance phenomena in high-dimensional chemical descriptor spaces: consequences for similarity-based approaches.

    Science.gov (United States)

    Rupp, Matthias; Schneider, Petra; Schneider, Gisbert

    2009-11-15

    Measuring the (dis)similarity of molecules is important for many cheminformatics applications like compound ranking, clustering, and property prediction. In this work, we focus on real-valued vector representations of molecules (as opposed to the binary spaces of fingerprints). We demonstrate the influence which the choice of (dis)similarity measure can have on results, and provide recommendations for such choices. We review the mathematical concepts used to measure (dis)similarity in vector spaces, namely norms, metrics, inner products, and, similarity coefficients, as well as the relationships between them, employing (dis)similarity measures commonly used in cheminformatics as examples. We present several phenomena (empty space phenomenon, sphere volume related phenomena, distance concentration) in high-dimensional descriptor spaces which are not encountered in two and three dimensions. These phenomena are theoretically characterized and illustrated on both artificial and real (bioactivity) data. 2009 Wiley Periodicals, Inc.

  6. Citation patterns of a controversial and high-impact paper: Worm et al. (2006) "Impacts of biodiversity loss on ocean ecosystem services".

    Science.gov (United States)

    Branch, Trevor A

    2013-01-01

    Citation patterns were examined for Worm et al. 2006 (Science 314:787-790), a high-impact paper that focused on relationships between marine biodiversity and ecosystem services. This paper sparked much controversy through its projection, highlighted in the press release, that all marine fisheries would be collapsed by 2048. Analysis of 664 citing papers revealed that only a small percentage (11%) referred to the 2048 projection, while 39% referred to fisheries collapse in general, and 40% to biodiversity and ecosystem services. The 2048 projection was mentioned more often in papers published soon after the original paper, in low-impact journals, and in journals outside of fields that would be expected to focus on biodiversity. Citing papers also mentioned the 2048 projection more often if they had few authors (28% of single-author papers vs. 2% of papers with 10 or more authors). These factors suggest that the more knowledgeable the authors of citing papers were about the controversy over the 2048 projection, the less likely they were to refer to it. A noteworthy finding was that if the original authors were also involved in the citing papers, they rarely (1 of 55 papers, 2%) mentioned the 2048 projection. Thus the original authors have emphasized the broader concerns about biodiversity loss, rather than the 2048 projection, as the key result of their study.

  7. The Normalization of Citation Counts Based on Classification Systems

    Directory of Open Access Journals (Sweden)

    Andreas Barth

    2013-08-01

    Full Text Available If we want to assess whether the paper in question has had a particularly high or low citation impact compared to other papers, the standard practice in bibliometrics is to normalize citations in respect of the subject category and publication year. A number of proposals for an improved procedure in the normalization of citation impact have been put forward in recent years. Against the background of these proposals, this study describes an ideal solution for the normalization of citation impact: in a first step, the reference set for the publication in question is collated by means of a classification scheme, where every publication is associated with a single principal research field or subfield entry (e.g., via Chemical Abstracts sections and a publication year. In a second step, percentiles of citation counts are calculated for this set and used to assign the normalized citation impact score to the publications (and also to the publication in question.

  8. Twitter Predicts Citation Rates of Ecological Research.

    Directory of Open Access Journals (Sweden)

    Brandon K Peoples

    Full Text Available The relationship between traditional metrics of research impact (e.g., number of citations and alternative metrics (altmetrics such as Twitter activity are of great interest, but remain imprecisely quantified. We used generalized linear mixed modeling to estimate the relative effects of Twitter activity, journal impact factor, and time since publication on Web of Science citation rates of 1,599 primary research articles from 20 ecology journals published from 2012-2014. We found a strong positive relationship between Twitter activity (i.e., the number of unique tweets about an article and number of citations. Twitter activity was a more important predictor of citation rates than 5-year journal impact factor. Moreover, Twitter activity was not driven by journal impact factor; the 'highest-impact' journals were not necessarily the most discussed online. The effect of Twitter activity was only about a fifth as strong as time since publication; accounting for this confounding factor was critical for estimating the true effects of Twitter use. Articles in impactful journals can become heavily cited, but articles in journals with lower impact factors can generate considerable Twitter activity and also become heavily cited. Authors may benefit from establishing a strong social media presence, but should not expect research to become highly cited solely through social media promotion. Our research demonstrates that altmetrics and traditional metrics can be closely related, but not identical. We suggest that both altmetrics and traditional citation rates can be useful metrics of research impact.

  9. Twitter Predicts Citation Rates of Ecological Research.

    Science.gov (United States)

    Peoples, Brandon K; Midway, Stephen R; Sackett, Dana; Lynch, Abigail; Cooney, Patrick B

    2016-01-01

    The relationship between traditional metrics of research impact (e.g., number of citations) and alternative metrics (altmetrics) such as Twitter activity are of great interest, but remain imprecisely quantified. We used generalized linear mixed modeling to estimate the relative effects of Twitter activity, journal impact factor, and time since publication on Web of Science citation rates of 1,599 primary research articles from 20 ecology journals published from 2012-2014. We found a strong positive relationship between Twitter activity (i.e., the number of unique tweets about an article) and number of citations. Twitter activity was a more important predictor of citation rates than 5-year journal impact factor. Moreover, Twitter activity was not driven by journal impact factor; the 'highest-impact' journals were not necessarily the most discussed online. The effect of Twitter activity was only about a fifth as strong as time since publication; accounting for this confounding factor was critical for estimating the true effects of Twitter use. Articles in impactful journals can become heavily cited, but articles in journals with lower impact factors can generate considerable Twitter activity and also become heavily cited. Authors may benefit from establishing a strong social media presence, but should not expect research to become highly cited solely through social media promotion. Our research demonstrates that altmetrics and traditional metrics can be closely related, but not identical. We suggest that both altmetrics and traditional citation rates can be useful metrics of research impact.

  10. Twitter predicts citation rates of ecological research

    Science.gov (United States)

    Peoples, Brandon K.; Midway, Stephen R.; Sackett, Dana K.; Lynch, Abigail; Cooney, Patrick B.

    2016-01-01

    The relationship between traditional metrics of research impact (e.g., number of citations) and alternative metrics (altmetrics) such as Twitter activity are of great interest, but remain imprecisely quantified. We used generalized linear mixed modeling to estimate the relative effects of Twitter activity, journal impact factor, and time since publication on Web of Science citation rates of 1,599 primary research articles from 20 ecology journals published from 2012–2014. We found a strong positive relationship between Twitter activity (i.e., the number of unique tweets about an article) and number of citations. Twitter activity was a more important predictor of citation rates than 5-year journal impact factor. Moreover, Twitter activity was not driven by journal impact factor; the ‘highest-impact’ journals were not necessarily the most discussed online. The effect of Twitter activity was only about a fifth as strong as time since publication; accounting for this confounding factor was critical for estimating the true effects of Twitter use. Articles in impactful journals can become heavily cited, but articles in journals with lower impact factors can generate considerable Twitter activity and also become heavily cited. Authors may benefit from establishing a strong social media presence, but should not expect research to become highly cited solely through social media promotion. Our research demonstrates that altmetrics and traditional metrics can be closely related, but not identical. We suggest that both altmetrics and traditional citation rates can be useful metrics of research impact.

  11. Coauthorship and Citation Networks for Statisticians

    CERN Document Server

    Ji, Pengsheng

    2014-01-01

    We have collected and cleaned two network data sets: Coauthorship and Citation networks for statisticians. The data sets are based on all research papers published in four of the top journals in statistics from 2003 to the first half of 2012. We analyze the data sets from many different perspectives, focusing on (a) productivity, patterns and trends, (b) centrality, and (c) community structures, and present an array of interesting findings. For (a), we find that over the 10-year period, both the average number of papers per author and the fraction of self citations have been decreasing, but the proportion of distant citations has been increasing. These suggest that the statistics community has become increasingly more collaborative, competitive, and globalized, driven by the boom of online resources and Search Engines. For (b), we identify the most prolific, the most collaborative, and the most highly cited authors. We also identify a handful of "hot" papers and suggest "Variable Selection" and several other ...

  12. Citation as a Representation Process

    OpenAIRE

    Kryssanov, V. V.; Rinaldo, F. J.; Ogawa, H.; Kuleshov, E.

    2006-01-01

    The presented work proposes a novel approach to model the citation rate. The paper begins with a brief introduction into informetrics studies and highlights drawbacks of the contemporary approaches to modeling the citation process as a product of social interactions. An alternative modeling framework based on results obtained in cognitive psychology is then introduced and applied in an experiment to investigate properties of the citation process, as they are revealed by a large collection of ...

  13. High-intensity discharge lamp and Duffing oscillator—Similarities and differences

    Science.gov (United States)

    Baumann, Bernd; Schwieger, Joerg; Stein, Ulrich; Hallerberg, Sarah; Wolff, Marcus

    2017-12-01

    The processes inside the arc tube of high-intensity discharge lamps are investigated using finite element simulations. The behavior of the gas mixture inside the arc tube is governed by differential equations describing mass, energy, and charge conservation, as well as the Helmholtz equation for the acoustic pressure and the Reynolds equations for the flow driven by buoyancy and Reynolds stresses. The model is highly nonlinear and requires a recursion procedure to account for the impact of acoustic streaming on the temperature and other fields. The investigations reveal the presence of a hysteresis and the corresponding jump phenomenon, quite similar to a Duffing oscillator. The similarities and, in particular, the differences of the nonlinear behavior of the high-intensity discharge lamp to that of a Duffing oscillator are discussed. For large amplitudes, the high-intensity discharge lamp exhibits a stiffening effect in contrast to the Duffing oscillator. It is speculated on how the stiffening might affect hysteresis suppression.

  14. Functional enrichment analyses and construction of functional similarity networks with high confidence function prediction by PFP

    Directory of Open Access Journals (Sweden)

    Kihara Daisuke

    2010-05-01

    Full Text Available Abstract Background A new paradigm of biological investigation takes advantage of technologies that produce large high throughput datasets, including genome sequences, interactions of proteins, and gene expression. The ability of biologists to analyze and interpret such data relies on functional annotation of the included proteins, but even in highly characterized organisms many proteins can lack the functional evidence necessary to infer their biological relevance. Results Here we have applied high confidence function predictions from our automated prediction system, PFP, to three genome sequences, Escherichia coli, Saccharomyces cerevisiae, and Plasmodium falciparum (malaria. The number of annotated genes is increased by PFP to over 90% for all of the genomes. Using the large coverage of the function annotation, we introduced the functional similarity networks which represent the functional space of the proteomes. Four different functional similarity networks are constructed for each proteome, one each by considering similarity in a single Gene Ontology (GO category, i.e. Biological Process, Cellular Component, and Molecular Function, and another one by considering overall similarity with the funSim score. The functional similarity networks are shown to have higher modularity than the protein-protein interaction network. Moreover, the funSim score network is distinct from the single GO-score networks by showing a higher clustering degree exponent value and thus has a higher tendency to be hierarchical. In addition, examining function assignments to the protein-protein interaction network and local regions of genomes has identified numerous cases where subnetworks or local regions have functionally coherent proteins. These results will help interpreting interactions of proteins and gene orders in a genome. Several examples of both analyses are highlighted. Conclusion The analyses demonstrate that applying high confidence predictions from PFP

  15. Incites into Citation Linking using the OAI-PMH

    CERN Multimedia

    CERN. Geneva

    2005-01-01

    There are some 300 repositories of research material (Source: IAR), most of which have an OAI-PMH interface, but no current Institutional Repositories export reference data - nor do they provide their users with citation impact metrics. We propose a model for extending IR's to be citation aware and to expose that data to citation indices using the OAI-PMH and OpenURL. We present some techniques for the export of citation data using the OAI-PMH in Citebase Search. As part of a proposed Open Access Citation Information study we have developed a proposal for the integration of reference parsing and linking into the author- deposit process. This highly-distributed approach to citation linking utilises the OAI-PMH to transfer structured citation data between IRs and citation indexing services. OpenURL - a standard for contextual linking using bibliographic data - is now a NISO standard. As well as it's linking role, OpenURL is a useful standard for the transfer of bibliographic data for the purposes of citation in...

  16. Citation analysis of the scientific publications of Britton Chance in ISI citation indexes

    Directory of Open Access Journals (Sweden)

    Lin Z. Li

    2014-03-01

    Full Text Available Britton Chance was a pioneer in many scientific fields such as enzymatic reaction kinetics, bioenergetics, metabolism, in vivo NMR, and biophotonics. As an engineer, physical chemist, physicist, physiologist, biophysicist, biochemist, innovator and educator, he had worked in diversified fields over extended periods between 1926 until his death in 2010, at the age of 97. In order to illustrate his scientific career and great impact on research from a new perspective, we employ scientometric analysis tools to analyze the publications of Britton Chance with data downloaded from the ISI Citation Indexes in April 2013. We included articles, reviews and proceeding papers but excluded meeting abstracts. In total, we obtained 1023 publication records with 1236 authors in 266 journals with 17,114 citations from 1945 to 2013. We show the annual publications and citations that Britton Chance received from 1945 to 2013, and generate HistCite maps on the basis of the global citations (GCS and local (self citations (LCS to show the citation relationships among the top-30 publications of Britton Chance. Metabolism and the development of physical methods to probe it appear to be the connecting thread of the lifelong research of Britton Chance. Furthermore, we generate the journal map and co-authorship map to show the broad scope of research topics and collaborators and the high impacts of the scientific oeuvre of Britton Chance ranging from physics, engineering, chemistry and biology to medicine.

  17. Citation classics in suicide and life threatening behavior: a research note.

    Science.gov (United States)

    Stack, Steven

    2012-12-01

    The number of citations a scholarly work receives is a common measure of its impact on the scientific literature; "citation classics" are the most highly cited works. The content of Suicide and Life-Threatening Behavior (SLTB) citation classics is described here. The impact of SLTB citation classics is compared to their counterparts in journals having published the most suicide papers. All data are from the ISI electronic venue on the Web of Science and refer to the number of citations the top 1% of works received in each of ten journals from 1975 through August 10, 2011. Among all ten journals, SLTB ranked first in the number of works on suicide. The principle theme of half of SLTB suicide classics was literature review. The median number of citations for SLTB citation classics (top 1%) was 121.5, with a range between 96 and 279 citations, but classics from generalized psychiatric journals received more citations as anticipated. Journal impact factors explained 73% of the variance in classic's citation counts across journals. On average, suicide classics received 30% more citations than all classics. Among a second group of five specialized suicide journals, however, SLTB ranked first in average 5-year impact. Although SLTB produced the highest number of suicide articles of any journal, SLTB's citation classics received fewer citations than suicide classics in high-impact/prestige, general journals. Future work is needed to assess what predicts which SLTB articles ultimately become citation classics. © 2012 The American Association of Suicidology.

  18. Encouraging data citation and discovery with the Data Citation Index.

    Science.gov (United States)

    Force, Megan M; Robinson, Nigel J

    2014-10-01

    An overview of the Data Citation Index is provided. Thomson Reuters developed this resource in response to a stated desire among members of the research community for increased attribution of non-traditional scholarly output. Launched in October of 2012 on the Web of science research platform, its aims include linking published research articles to their underlying data sets and tracking the citation of the data, as well as encouraging bibliographic citation of data. Cross-disciplinary search capabilities in the Index enable new possibilities for data discovery and synthesis. Data repositories are evaluated with respect to various selection criteria, with particular attention to their relevance to scientific and scholarly research. Index content reflects current data deposition practices. As data citation standards and practices continue to move toward widespread formalization and adoption, the initiative seeks to address issues of data citation, reuse, and author credit in a developing climate.

  19. Characterization of two bacterial hydroxynitrile lyases with high similarity to cupin superfamily proteins.

    Science.gov (United States)

    Hussain, Zahid; Wiedner, Romana; Steiner, Kerstin; Hajek, Tanja; Avi, Manuela; Hecher, Bianca; Sessitsch, Angela; Schwab, Helmut

    2012-03-01

    Hydroxynitrile lyases (HNLs) catalyze the cleavage of cyanohydrins. In the reverse reaction, they catalyze the formation of carbon-carbon bonds by enantioselective condensation of hydrocyanic acid with carbonyls. In this study, we describe two proteins from endophytic bacteria that display activity in the cleavage and the synthesis reaction of (R)-mandelonitrile with up to 74% conversion of benzaldehyde (enantiopreference ee 89%). Both showed high similarity to proteins of the cupin superfamily which so far were not known to exhibit HNL activity.

  20. High torque density permanent magnet brushless machines with similar slot and pole numbers

    Science.gov (United States)

    Ishak, D.; Zhu, Z. Q.; Howe, D.

    2004-05-01

    The paper describes a theoretical and experimental investigation into the electromagnetic performance of permanent magnet brushless machines having similar slot and pole numbers. Finite element analysis is employed to predict the airgap flux density distribution, the cogging torque and emf waveforms, and the winding inductances. It is shown that such machines exhibit a high torque density and is conducive to fault tolerance. The results are validated on two experimental motors.

  1. High-pressure NMR reveals close similarity between cold and alcohol protein denaturation in ubiquitin.

    Science.gov (United States)

    Vajpai, Navratna; Nisius, Lydia; Wiktor, Maciej; Grzesiek, Stephan

    2013-01-29

    Proteins denature not only at high, but also at low temperature as well as high pressure. These denatured states are not easily accessible for experiment, because usually heat denaturation causes aggregation, whereas cold or pressure denaturation occurs at temperatures well below the freezing point of water or pressures above 5 kbar, respectively. Here we have obtained atomic details of the pressure-assisted, cold-denatured state of ubiquitin at 2,500 bar and 258 K by high-resolution NMR techniques. Under these conditions, a folded, native-like and a disordered state exist in slow exchange. Secondary chemical shifts show that the disordered state has structural propensities for a native-like N-terminal β-hairpin and α-helix and a nonnative C-terminal α-helix. These propensities are very similar to the previously described alcohol-denatured (A-)state. Similar to the A-state, (15)N relaxation data indicate that the secondary structure elements move as independent segments. The close similarity of pressure-assisted, cold-denatured, and alcohol-denatured states with native and nonnative secondary elements supports a hierarchical mechanism of folding and supports the notion that similar to alcohol, pressure and cold reduce the hydrophobic effect. Indeed, at nondenaturing concentrations of methanol, a complete transition from the native to the A-state can be achieved at ambient temperature by varying the pressure from 1 to 2,500 bar. The methanol-assisted pressure transition is completely reversible and can also be induced in protein G. This method should allow highly detailed studies of protein-folding transitions in a continuous and reversible manner.

  2. A semi-supervised approach using label propagation to support citation screening.

    Science.gov (United States)

    Kontonatsios, Georgios; Brockmeier, Austin J; Przybyła, Piotr; McNaught, John; Mu, Tingting; Goulermas, John Y; Ananiadou, Sophia

    2017-08-01

    Citation screening, an integral process within systematic reviews that identifies citations relevant to the underlying research question, is a time-consuming and resource-intensive task. During the screening task, analysts manually assign a label to each citation, to designate whether a citation is eligible for inclusion in the review. Recently, several studies have explored the use of active learning in text classification to reduce the human workload involved in the screening task. However, existing approaches require a significant amount of manually labelled citations for the text classification to achieve a robust performance. In this paper, we propose a semi-supervised method that identifies relevant citations as early as possible in the screening process by exploiting the pairwise similarities between labelled and unlabelled citations to improve the classification performance without additional manual labelling effort. Our approach is based on the hypothesis that similar citations share the same label (e.g., if one citation should be included, then other similar citations should be included also). To calculate the similarity between labelled and unlabelled citations we investigate two different feature spaces, namely a bag-of-words and a spectral embedding based on the bag-of-words. The semi-supervised method propagates the classification codes of manually labelled citations to neighbouring unlabelled citations in the feature space. The automatically labelled citations are combined with the manually labelled citations to form an augmented training set. For evaluation purposes, we apply our method to reviews from clinical and public health. The results show that our semi-supervised method with label propagation achieves statistically significant improvements over two state-of-the-art active learning approaches across both clinical and public health reviews. Copyright © 2017 The Authors. Published by Elsevier Inc. All rights reserved.

  3. From Attention to Citation, What and How Does Altmetrics Work?

    CERN Document Server

    Wang, Xianwen; Fang, Zhichao; Mao, Wenli

    2014-01-01

    Scholarly and social impacts of scientific publications could be measured by various metrics. In this study, the relationship between various metrics of 63,805 PLOS research articles are studied. Generally, article views correlate well with citation, however, different types of article view have different levels of correlation with citation, when pdf download correlates the citation most significantly. It's necessary for publishers and journals to provide detailed and comprehensive article metrics. Although the low correlation between social attention and citation is confirmed by this study and previous studies, more than ever, we find that social attention is highly correlated with article view, especially the browser html view. Social attention is the important source that bringing network traffic to browser html view and may lead to citation subsequently. High altmetric score has the potential role in promoting the long-term academic impact of articles, when a conceptual model is proposed to interpret the ...

  4. Improving Software Citation and Credit

    CERN Document Server

    Allen, Alice; DuPrie, Kimberly; Mink, Jessica; Nemiroff, Robert; Robitaille, Thomas; Shamir, Lior; Shortridge, Keith; Taylor, Mark; Teuben, Peter; Wallin, John

    2015-01-01

    The past year has seen movement on several fronts for improving software citation, including the Center for Open Science's Transparency and Openness Promotion (TOP) Guidelines, the Software Publishing Special Interest Group that was started at January's AAS meeting in Seattle at the request of that organization's Working Group on Astronomical Software, a Sloan-sponsored meeting at GitHub in San Francisco to begin work on a cohesive research software citation-enabling platform, the work of Force11 to "transform and improve" research communication, and WSSSPE's ongoing efforts that include software publication, citation, credit, and sustainability. Brief reports on these efforts were shared at the BoF, after which participants discussed ideas for improving software citation, generating a list of recommendations to the community of software authors, journal publishers, ADS, and research authors. The discussion, recommendations, and feedback will help form recommendations for software citation to those publishers...

  5. What Do Citation Patterns Reveal about the Outdoor Education Field? A Snapshot 2000-2013

    Science.gov (United States)

    Brookes, Andrew; Stewart, Alistair

    2016-01-01

    This study considered what insights into outdoor education (OE) research and scholarship could be gleaned from citation indices and patterns. Citation indices have long been used as ranking tools in the physical sciences, and more recently have been used in humanities and social sciences. High citation measures indicate high research impact,…

  6. Citation distribution profile in Brazilian journals of general medicine

    Directory of Open Access Journals (Sweden)

    Luiggi Araujo Lustosa

    Full Text Available CONTEXT AND OBJECTIVE: Impact factors are currently the bibliometric index most used for evaluating scientific journals. However, the way in which they are used, for instance concerning the study or journal types analyzed, can markedly interfere with estimate reliability. This study aimed to analyze the citation distribution pattern in three Brazilian journals of general medicine. DESIGN AND SETTING: This was a descriptive study based on numbers of citations of scientific studies published by three Brazilian journals of general medicine. METHODS: The journals analyzed were São Paulo Medical Journal, Clinics and Revista da Associação Médica Brasileira. This survey used data available from the Institute for Scientific Information (ISI platform, from which the total number of papers published in each journal in 2007-2008 and the number of citations of these papers in 2009 were obtained. From these data, the citation distribution was derived and journal impact factors (average number of citations were estimated. These factors were then compared with those directly available from the ISI Journal of Citation Reports (JCR. RESULTS: Respectively, 134, 203 and 192 papers were published by these journals during the period analyzed. The observed citation distributions were highly skewed, such that many papers had few citations and a small percentage had many citations. It was not possible to identify any specific pattern for the most cited papers or to exactly reproduce the JCR impact factors. CONCLUSION: Use of measures like "impact factors", which characterize citations through averages, does not adequately represent the citation distribution in the journals analyzed.

  7. Similar origin for low- and high-albedo Jovian Trojans and Hilda asteroids?

    Science.gov (United States)

    Marsset, M.; Vernazza, P.; Gourgeot, F.; Dumas, C.; Birlan, M.; Lamy, P.; Binzel, R. P.

    2014-08-01

    Hilda asteroids and Jupiter Trojans are two low-albedo (pv ~ 0.07) populations for which the Nice model predicts an origin in the primordial Kuiper Belt region. However, recent surveys by WISE and the Spitzer Space Telescope (SST) have revealed that ~2% of these objects possess high albedos (pv ≥ 0.15), which might indicate interlopers - that is, objects not formed in the Kuiper Belt - among these two populations. Here, we report spectroscopic observations in the visible and / or near-infrared spectral ranges of twelve high-albedo (pv > 0.15) Hilda asteroids and Jupiter Trojans. These twelve objects have spectral properties similar to those of the low-albedo population, which suggests a similar composition and hence a similar origin for low- and high-albedo Hilda asteroids and Jupiter Trojans. We therefore propose that most high albedos probably result from statistical bias or uncertainties that affect the WISE and SST measurements. However, some of the high albedos may be true and the outcome of some collision-induced resurfacing by a brighter material that could include water ice. Future work should attempt to investigate the nature of this supposedly bright material. The lack of interlopers in our sample allows us to set an upper limit of 0.4% at a confidence level of 99.7% on the abundance of interlopers with unexpected taxonomic classes (e.g., A-, S-, V-type asteroids) among these two populations. Reflectance spectra presented in this paper are available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (ftp://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/568/L7Based on observations collected at the European Organisation for Astronomical Research in the Southern Hemisphere, Chile (ESO program ID: 091.C-0247).

  8. Method of synthesis of abstract images with high self-similarity

    Science.gov (United States)

    Matveev, Nikolay V.; Shcheglov, Sergey A.; Romanova, Galina E.; Koneva, Ð.¢atiana A.

    2017-06-01

    Abstract images with high self-similarity could be used for drug-free stress therapy. This based on the fact that a complex visual environment has a high affective appraisal. To create such an image we can use the setup based on the three laser sources of small power and different colors (Red, Green, Blue), the image is the pattern resulting from the reflecting and refracting by the complicated form object placed into the laser ray paths. The images were obtained experimentally which showed the good therapy effect. However, to find and to choose the object which gives needed image structure is very difficult and requires many trials. The goal of the work is to develop a method and a procedure of finding the object form which if placed into the ray paths can provide the necessary structure of the image In fact the task means obtaining the necessary irradiance distribution on the given surface. Traditionally such problems are solved using the non-imaging optics methods. In the given case this task is very complicated because of the complicated structure of the illuminance distribution and its high non-linearity. Alternative way is to use the projected image of a mask with a given structure. We consider both ways and discuss how they can help to speed up the synthesis procedure for the given abstract image of the high self-similarity for the setups of drug-free therapy.

  9. Characterizing and modeling citation dynamics.

    Directory of Open Access Journals (Sweden)

    Young-Ho Eom

    Full Text Available Citation distributions are crucial for the analysis and modeling of the activity of scientists. We investigated bibliometric data of papers published in journals of the American Physical Society, searching for the type of function which best describes the observed citation distributions. We used the goodness of fit with Kolmogorov-Smirnov statistics for three classes of functions: log-normal, simple power law and shifted power law. The shifted power law turns out to be the most reliable hypothesis for all citation networks we derived, which correspond to different time spans. We find that citation dynamics is characterized by bursts, usually occurring within a few years since publication of a paper, and the burst size spans several orders of magnitude. We also investigated the microscopic mechanisms for the evolution of citation networks, by proposing a linear preferential attachment with time dependent initial attractiveness. The model successfully reproduces the empirical citation distributions and accounts for the presence of citation bursts as well.

  10. The citation impact of hydrology journals

    Science.gov (United States)

    Clark, Martyn P.; Hanson, R. Brooks

    2017-06-01

    We examine a suite of journal-level productivity and citation statistics for six leading hydrology journals in order to help authors understand the robustness and meaning of journal impact factors. The main results are (1) the probability distribution of citations is remarkably homogenous across hydrology journals; (2) hydrology papers tend to have a long-lasting impact, with a large fraction of papers cited after the 2 year window used to calculate the journal impact factor; and (3) journal impact factors are characterized by substantial year-to-year variability (especially for smaller journals), primarily because a small number of highly cited papers have a large influence on the journal impact factor. Consequently, the ranking of hydrology journals with respect to the journal impact factor in a given year does not have much information content. These results highlight problems in using citation data to evaluate hydrologic science. We hope that this analysis helps authors better understand journal-level citation statistics, and also helps improve research assessments in institutions and funding agencies.

  11. Mining author relationship in scholarly networks based on tripartite citation analysis.

    Directory of Open Access Journals (Sweden)

    Feifei Wang

    Full Text Available Following scholars in Scientometrics as examples, we develop five author relationship networks, namely, co-authorship, author co-citation (AC, author bibliographic coupling (ABC, author direct citation (ADC, and author keyword coupling (AKC. The time frame of data sets is divided into two periods: before 2011 (i.e., T1 and after 2011 (i.e., T2. Through quadratic assignment procedure analysis, we found that some authors have ABC or AC relationships (i.e., potential communication relationship, PCR but do not have actual collaborations or direct citations (i.e., actual communication relationship, ACR among them. In addition, we noticed that PCR and AKC are highly correlated and that the old PCR and the new ACR are correlated and consistent. Such facts indicate that PCR tends to produce academic exchanges based on similar themes, and ABC bears more advantages in predicting potential relations. Based on tripartite citation analysis, including AC, ABC, and ADC, we also present an author-relation mining process. Such process can be used to detect deep and potential author relationships. We analyze the prediction capacity by comparing between the T1 and T2 periods, which demonstrate that relation mining can be complementary in identifying authors based on similar themes and discovering more potential collaborations and academic communities.

  12. Mining author relationship in scholarly networks based on tripartite citation analysis.

    Science.gov (United States)

    Wang, Feifei; Wang, Xiaohan; Yang, Siluo

    2017-01-01

    Following scholars in Scientometrics as examples, we develop five author relationship networks, namely, co-authorship, author co-citation (AC), author bibliographic coupling (ABC), author direct citation (ADC), and author keyword coupling (AKC). The time frame of data sets is divided into two periods: before 2011 (i.e., T1) and after 2011 (i.e., T2). Through quadratic assignment procedure analysis, we found that some authors have ABC or AC relationships (i.e., potential communication relationship, PCR) but do not have actual collaborations or direct citations (i.e., actual communication relationship, ACR) among them. In addition, we noticed that PCR and AKC are highly correlated and that the old PCR and the new ACR are correlated and consistent. Such facts indicate that PCR tends to produce academic exchanges based on similar themes, and ABC bears more advantages in predicting potential relations. Based on tripartite citation analysis, including AC, ABC, and ADC, we also present an author-relation mining process. Such process can be used to detect deep and potential author relationships. We analyze the prediction capacity by comparing between the T1 and T2 periods, which demonstrate that relation mining can be complementary in identifying authors based on similar themes and discovering more potential collaborations and academic communities.

  13. Similarity in recombination rate estimates highly correlates with genetic differentiation in humans.

    Directory of Open Access Journals (Sweden)

    Hafid Laayouni

    Full Text Available Recombination varies greatly among species, as illustrated by the poor conservation of the recombination landscape between humans and chimpanzees. Thus, shorter evolutionary time frames are needed to understand the evolution of recombination. Here, we analyze its recent evolution in humans. We calculated the recombination rates between adjacent pairs of 636,933 common single-nucleotide polymorphism loci in 28 worldwide human populations and analyzed them in relation to genetic distances between populations. We found a strong and highly significant correlation between similarity in the recombination rates corrected for effective population size and genetic differentiation between populations. This correlation is observed at the genome-wide level, but also for each chromosome and when genetic distances and recombination similarities are calculated independently from different parts of the genome. Moreover, and more relevant, this relationship is robustly maintained when considering presence/absence of recombination hotspots. Simulations show that this correlation cannot be explained by biases in the inference of recombination rates caused by haplotype sharing among similar populations. This result indicates a rapid pace of evolution of recombination, within the time span of differentiation of modern humans.

  14. Citation Help in Databases: The More Things Change, the More They Stay the Same

    Science.gov (United States)

    Van Ullen, Mary; Kessler, Jane

    2012-01-01

    In 2005, the authors reviewed citation help in databases and found an error rate of 4.4 errors per citation. This article describes a follow-up study that revealed a modest improvement in the error rate to 3.4 errors per citation, still unacceptably high. The most problematic area was retrieval statements. The authors conclude that librarians…

  15. Aggregated journal–journal citation relations in scopus and web of science matched and compared in terms of networks, maps, and interactive overlays

    NARCIS (Netherlands)

    Leydesdorff, L.; de Moya-Anegón, F.; de Nooy, W.

    We compare the network of aggregated journal–journal citation relations provided by the Journal Citation Reports (JCR) 2012 of the Science Citation Index (SCI) and Social Sciences Citation Index (SSCI) with similar data based on Scopus 2012. First, global and overlay maps were developed for the 2

  16. Diet History Questionnaire: Suggested Citations

    Science.gov (United States)

    Use of the Diet History Questionnaire and Diet*Calc Analysis Software for publication purposes should contain a citation which includes version information for the software, questionnaire, and nutrient database.

  17. Assessing citation networks for dissemination and implementation research frameworks.

    Science.gov (United States)

    Skolarus, Ted A; Lehmann, Todd; Tabak, Rachel G; Harris, Jenine; Lecy, Jesse; Sales, Anne E

    2017-07-28

    A recent review of frameworks used in dissemination and implementation (D&I) science described 61 judged to be related either to dissemination, implementation, or both. The current use of these frameworks and their contributions to D&I science more broadly has yet to be reviewed. For these reasons, our objective was to determine the role of these frameworks in the development of D&I science. We used the Web of Science™ Core Collection and Google Scholar™ to conduct a citation network analysis for the key frameworks described in a recent systematic review of D&I frameworks (Am J Prev Med 43(3):337-350, 2012). From January to August 2016, we collected framework data including title, reference, publication year, and citations per year and conducted descriptive and main path network analyses to identify those most important in holding the current citation network for D&I frameworks together. The source article contained 119 cited references, with 50 published articles and 11 documents identified as a primary framework reference. The average citations per year for the 61 frameworks reviewed ranged from 0.7 to 103.3 among articles published from 1985 to 2012. Citation rates from all frameworks are reported with citation network analyses for the framework review article and ten highly cited framework seed articles. The main path for the D&I framework citation network is presented. We examined citation rates and the main paths through the citation network to delineate the current landscape of D&I framework research, and opportunities for advancing framework development and use. Dissemination and implementation researchers and practitioners may consider frequency of framework citation and our network findings when planning implementation efforts to build upon this foundation and promote systematic advances in D&I science.

  18. Evidence for deep regulatory similarities in early developmental programs across highly diverged insects.

    Science.gov (United States)

    Kazemian, Majid; Suryamohan, Kushal; Chen, Jia-Yu; Zhang, Yinan; Samee, Md Abul Hassan; Halfon, Marc S; Sinha, Saurabh

    2014-09-01

    Many genes familiar from Drosophila development, such as the so-called gap, pair-rule, and segment polarity genes, play important roles in the development of other insects and in many cases appear to be deployed in a similar fashion, despite the fact that Drosophila-like "long germband" development is highly derived and confined to a subset of insect families. Whether or not these similarities extend to the regulatory level is unknown. Identification of regulatory regions beyond the well-studied Drosophila has been challenging as even within the Diptera (flies, including mosquitoes) regulatory sequences have diverged past the point of recognition by standard alignment methods. Here, we demonstrate that methods we previously developed for computational cis-regulatory module (CRM) discovery in Drosophila can be used effectively in highly diverged (250-350 Myr) insect species including Anopheles gambiae, Tribolium castaneum, Apis mellifera, and Nasonia vitripennis. In Drosophila, we have successfully used small sets of known CRMs as "training data" to guide the search for other CRMs with related function. We show here that although species-specific CRM training data do not exist, training sets from Drosophila can facilitate CRM discovery in diverged insects. We validate in vivo over a dozen new CRMs, roughly doubling the number of known CRMs in the four non-Drosophila species. Given the growing wealth of Drosophila CRM annotation, these results suggest that extensive regulatory sequence annotation will be possible in newly sequenced insects without recourse to costly and labor-intensive genome-scale experiments. We develop a new method, Regulus, which computes a probabilistic score of similarity based on binding site composition (despite the absence of nucleotide-level sequence alignment), and demonstrate similarity between functionally related CRMs from orthologous loci. Our work represents an important step toward being able to trace the evolutionary history of gene

  19. [In Process Citation].

    Science.gov (United States)

    Guglielmetti, Chiara; Gilardi, Silvia; Licata, Mario; De Luca, Giuseppe

    2016-05-26

    Aggressive behaviour of patients and their relatives represent a risk factor for healthcare professionals. The study aimed to explore the context of high risk departments (emergency department, psychiatric department) and of low risk departments (midwifery/paediatrics and outpatients clinic): a) the risk of exposure to various forms of aggression (physical, verbal, threats) by patients and their visitors towards healthcare professionals; b) how the healthcare professionals react to such aggressive events; c) the relationship between verbal aggression and healthcare professional burnout, compared to other work-related stressors. The cross-sectional study involved 620 healthcare workers in a hospital in northern Italy (47.7% redemption rate, equivalent to 296 subjects). The data were gathered through a self-report on-line questionnaire. The risk of aggression, regardless of its form, was not dependent on the role of the healthcare professional, while risk was lower for older professionals and for women. The risk index for emergency department health professionals was higher than the index for professionals in the other three areas. Perceived levels of verbal aggression in the midwifery/paediatrics department were similar to those in the psychiatric department. Verbal aggression was found to be linked to the three dimensions of burnout and to a higher contribution to depersonalisation. the study showed that specific prevention initiatives and health profession support are also needed in clinical departments traditionally considered at low risk.

  20. Citation analysis of scientific categories

    Directory of Open Access Journals (Sweden)

    Gregory S. Patience

    2017-05-01

    Full Text Available Databases catalogue the corpus of research literature into scientific categories and report classes of bibliometric data such as the number of citations to articles, the number of authors, journals, funding agencies, institutes, references, etc. The number of articles and citations in a category are gauges of productivity and scientific impact but a quantitative basis to compare researchers between categories is limited. Here, we compile a list of bibliometric indicators for 236 science categories and citation rates of the 500 most cited articles of each category. The number of citations per paper vary by several orders of magnitude and are highest in multidisciplinary sciences, general internal medicine, and biochemistry and lowest in literature, poetry, and dance. A regression model demonstrates that citation rates to the top articles in each category increase with the square root of the number of articles in a category and decrease proportionately with the age of the references: articles in categories that cite recent research are also cited more frequently. The citation rate correlates positively with the number of funding agencies that finance the research. The category h-index correlates with the average number of cites to the top 500 ranked articles of each category (R2=0.997. Furthermore, only a few journals publish the top 500 cited articles in each category: four journals publish 60% (σ=±20% of these and ten publish 81% (σ=±15%.

  1. Citation analysis of scientific categories.

    Science.gov (United States)

    Patience, Gregory S; Patience, Christian A; Blais, Bruno; Bertrand, Francois

    2017-05-01

    Databases catalogue the corpus of research literature into scientific categories and report classes of bibliometric data such as the number of citations to articles, the number of authors, journals, funding agencies, institutes, references, etc. The number of articles and citations in a category are gauges of productivity and scientific impact but a quantitative basis to compare researchers between categories is limited. Here, we compile a list of bibliometric indicators for 236 science categories and citation rates of the 500 most cited articles of each category. The number of citations per paper vary by several orders of magnitude and are highest in multidisciplinary sciences, general internal medicine, and biochemistry and lowest in literature, poetry, and dance. A regression model demonstrates that citation rates to the top articles in each category increase with the square root of the number of articles in a category and decrease proportionately with the age of the references: articles in categories that cite recent research are also cited more frequently. The citation rate correlates positively with the number of funding agencies that finance the research. The category h-index correlates with the average number of cites to the top 500 ranked articles of each category ([Formula: see text]). Furthermore, only a few journals publish the top 500 cited articles in each category: four journals publish 60% ([Formula: see text]) of these and ten publish 81% ([Formula: see text]).

  2. Masturbation Experiences of Swedish Senior High School Students: Gender Differences and Similarities.

    Science.gov (United States)

    Driemeyer, Wiebke; Janssen, Erick; Wiltfang, Jens; Elmerstig, Eva

    Research about masturbation tends to be limited to the assessment of masturbation incidence and frequency. Consequently, little is known about what people experience connected to masturbation. This might be one reason why theoretical approaches that specifically address the persistent gender gap in masturbation frequency are lacking. The aim of the current study was to explore several aspects of masturbation in young men and women, and to examine possible associations with their social backgrounds and sexual histories. Data from 1,566 women and 1,452 men (ages 18 to 22) from 52 Swedish senior high schools were analyzed. Comparisons between men and women were made regarding incidence of and age at first masturbation, the use of objects (e.g., sex toys), fantasies, and sexual functioning during masturbation, as well as about their attitudes toward masturbation and sexual fantasies. Cluster analysis was carried out to identify similarities between and differences within the gender groups. While overall more men than women reported experience with several of the investigated aspects, cluster analyses revealed that a large proportion of men and women reported similar experiences and that fewer experiences are not necessarily associated with negative attitudes toward masturbation. Implications of these findings are discussed in consideration of particular social backgrounds.

  3. High-resolution seismic event detection using local similarity for Large-N arrays.

    Science.gov (United States)

    Li, Zefeng; Peng, Zhigang; Hollis, Dan; Zhu, Lijun; McClellan, James

    2018-01-26

    We develop a novel method for seismic event detection that can be applied to large-N arrays. The method is based on a new detection function named local similarity, which quantifies the signal consistency between the examined station and its nearest neighbors. Using the 5200-station Long Beach nodal array, we demonstrate that stacked local similarity functions can be used to detect seismic events with amplitudes near or below noise levels. We apply the method to one-week continuous data around the 03/11/2011 Mw 9.1 Tohoku-Oki earthquake, to detect local and distant events. In the 5-10 Hz range, we detect various events of natural and anthropogenic origins, but without a clear increase in local seismicity during and following the surface waves of the Tohoku-Oki mainshock. In the 1-Hz low-pass-filtered range, we detect numerous events, likely representing aftershocks from the Tohoku-Oki mainshock region. This high-resolution detection technique can be applied to both ultra-dense and regular array recordings for monitoring ultra-weak micro-seismicity and detecting unusual seismic events in noisy environments.

  4. Recombination and selectional forces in cyanopeptolin NRPS operons from highly similar, but geographically remote Planktothrix strains

    Directory of Open Access Journals (Sweden)

    Kristensen Tom

    2008-08-01

    Full Text Available Abstract Background Cyanopeptolins are nonribosomally produced heptapetides showing a highly variable composition. The cyanopeptolin synthetase operon has previously been investigated in three strains from the genera Microcystis, Planktothrix and Anabaena. Cyanopeptolins are displaying protease inhibitor activity, but the biological function(s is (are unknown. Cyanopeptolin gene cluster variability and biological functions of the peptide variants are likely to be interconnected. Results We have investigated two cyanopeptolin gene clusters from highly similar, but geographically remote strains of the same genus. Sequencing of a nonribosomal peptide synthetase (NRPS cyanopeptolin gene cluster from the Japanese strain Planktothrix NIES 205 (205-oci, showed the 30 kb gene cluster to be highly similar to the oci gene cluster previously described in Planktothrix NIVA CYA 116, isolated in Norway. Both operons contained seven NRPS modules, a sulfotransferase (S and a glyceric acid loading (GA-domain. Sequence analyses showed a high degree of conservation, except for the presence of an epimerase domain in NIES 205 and the regions around the epimerase, showing high substitution rates and Ka/Ks values above 1. The two strains produce almost identical cyanopeptolins, cyanopeptolin-1138 and oscillapeptin E respectively, but with slight differences regarding the production of minor cyanopeptolin variants. These variants may be the result of relaxed adenylation (A-domain specificity in the nonribosomal enzyme complex. Other genetic markers (16S rRNA, ntcA and the phycocyanin cpcBA spacer were identical, supporting that these geographically separated Planktothrix strains are closely related. Conclusion A horizontal gene transfer event resulting in exchange of a whole module-encoding region was observed. Nucleotide statistics indicate that both purifying selection and positive selection forces are operating on the gene cluster. The positive selection forces are

  5. Power-law citation distributions are not scale-free

    Science.gov (United States)

    Golosovsky, Michael

    2017-09-01

    We analyze time evolution of statistical distributions of citations to scientific papers published in the same year. While these distributions seem to follow the power-law dependence we find that they are nonstationary and the exponent of the power-law fit decreases with time and does not come to saturation. We attribute the nonstationarity of citation distributions to different longevity of the low-cited and highly cited papers. By measuring citation trajectories of papers we found that citation careers of the low-cited papers come to saturation after 10-15 years while those of the highly cited papers continue to increase indefinitely: The papers that exceed some citation threshold become runaways. Thus, we show that although citation distribution can look as a power-law dependence, it is not scale free and there is a hidden dynamic scale associated with the onset of runaways. We compare our measurements to our recently developed model of citation dynamics based on copying-redirection-triadic closure and find explanations to our empirical observations.

  6. 41 CFR 105-1.150 - Citation.

    Science.gov (United States)

    2010-07-01

    ... 41 Public Contracts and Property Management 3 2010-07-01 2010-07-01 false Citation. 105-1.150... (Continued) GENERAL SERVICES ADMINISTRATION 1-INTRODUCTION 1.1-Regulations System § 105-1.150 Citation. (a) In formal documents, such as legal briefs, citations of chapter 105 material shall include a citation...

  7. 27 CFR 71.72 - Before citation.

    Science.gov (United States)

    2010-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 2 2010-04-01 2010-04-01 false Before citation. 71.72... Procedure Surrender of Permit § 71.72 Before citation. If a respondent surrenders the permit before citation... appropriate TTB officer, warrants citation for suspension, revocation or annulment, the surrender shall be...

  8. Citation analysis of puerperal and menstrual psychosis.

    Science.gov (United States)

    Brockington, Ian

    2017-02-01

    A citation analysis of more than 2500 works on the childbearing and menstrual psychoses has shown that the average number of citations is 1 % of the literature or less; Anglo-Saxon authors have the lowest standards of scholarship. Many excellent works have received few of no citations. Attention is drawn to citation fraud and the pernicious effect of superficial "reviews."

  9. Multiple Citation Indicators and Their Composite across Scientific Disciplines.

    Directory of Open Access Journals (Sweden)

    John P A Ioannidis

    2016-07-01

    Full Text Available Many fields face an increasing prevalence of multi-authorship, and this poses challenges in assessing citation metrics. Here, we explore multiple citation indicators that address total impact (number of citations, Hirsch H index [H], co-authorship adjustment (Schreiber Hm index [Hm], and author order (total citations to papers as single; single or first; or single, first, or last author. We demonstrate the correlation patterns between these indicators across 84,116 scientists (those among the top 30,000 for impact in a single year [2013] in at least one of these indicators and separately across 12 scientific fields. Correlation patterns vary across these 12 fields. In physics, total citations are highly negatively correlated with indicators of co-authorship adjustment and of author order, while in other sciences the negative correlation is seen only for total citation impact and citations to papers as single author. We propose a composite score that sums standardized values of these six log-transformed indicators. Of the 1,000 top-ranked scientists with the composite score, only 322 are in the top 1,000 based on total citations. Many Nobel laureates and other extremely influential scientists rank among the top-1,000 with the composite indicator, but would rank much lower based on total citations. Conversely, many of the top 1,000 authors on total citations have had no single/first/last-authored cited paper. More Nobel laureates of 2011-2015 are among the top authors when authors are ranked by the composite score than by total citations, H index, or Hm index; 40/47 of these laureates are among the top 30,000 by at least one of the six indicators. We also explore the sensitivity of indicators to self-citation and alphabetic ordering of authors in papers across different scientific fields. Multiple indicators and their composite may give a more comprehensive picture of impact, although no citation indicator, single or composite, can be expected to

  10. Multiple Citation Indicators and Their Composite across Scientific Disciplines.

    Science.gov (United States)

    Ioannidis, John P A; Klavans, Richard; Boyack, Kevin W

    2016-07-01

    Many fields face an increasing prevalence of multi-authorship, and this poses challenges in assessing citation metrics. Here, we explore multiple citation indicators that address total impact (number of citations, Hirsch H index [H]), co-authorship adjustment (Schreiber Hm index [Hm]), and author order (total citations to papers as single; single or first; or single, first, or last author). We demonstrate the correlation patterns between these indicators across 84,116 scientists (those among the top 30,000 for impact in a single year [2013] in at least one of these indicators) and separately across 12 scientific fields. Correlation patterns vary across these 12 fields. In physics, total citations are highly negatively correlated with indicators of co-authorship adjustment and of author order, while in other sciences the negative correlation is seen only for total citation impact and citations to papers as single author. We propose a composite score that sums standardized values of these six log-transformed indicators. Of the 1,000 top-ranked scientists with the composite score, only 322 are in the top 1,000 based on total citations. Many Nobel laureates and other extremely influential scientists rank among the top-1,000 with the composite indicator, but would rank much lower based on total citations. Conversely, many of the top 1,000 authors on total citations have had no single/first/last-authored cited paper. More Nobel laureates of 2011-2015 are among the top authors when authors are ranked by the composite score than by total citations, H index, or Hm index; 40/47 of these laureates are among the top 30,000 by at least one of the six indicators. We also explore the sensitivity of indicators to self-citation and alphabetic ordering of authors in papers across different scientific fields. Multiple indicators and their composite may give a more comprehensive picture of impact, although no citation indicator, single or composite, can be expected to select all the

  11. Uncovering highly obfuscated plagiarism cases using fuzzy semantic-based similarity model

    Directory of Open Access Journals (Sweden)

    Salha M. Alzahrani

    2015-07-01

    Full Text Available Highly obfuscated plagiarism cases contain unseen and obfuscated texts, which pose difficulties when using existing plagiarism detection methods. A fuzzy semantic-based similarity model for uncovering obfuscated plagiarism is presented and compared with five state-of-the-art baselines. Semantic relatedness between words is studied based on the part-of-speech (POS tags and WordNet-based similarity measures. Fuzzy-based rules are introduced to assess the semantic distance between source and suspicious texts of short lengths, which implement the semantic relatedness between words as a membership function to a fuzzy set. In order to minimize the number of false positives and false negatives, a learning method that combines a permission threshold and a variation threshold is used to decide true plagiarism cases. The proposed model and the baselines are evaluated on 99,033 ground-truth annotated cases extracted from different datasets, including 11,621 (11.7% handmade paraphrases, 54,815 (55.4% artificial plagiarism cases, and 32,578 (32.9% plagiarism-free cases. We conduct extensive experimental verifications, including the study of the effects of different segmentations schemes and parameter settings. Results are assessed using precision, recall, F-measure and granularity on stratified 10-fold cross-validation data. The statistical analysis using paired t-tests shows that the proposed approach is statistically significant in comparison with the baselines, which demonstrates the competence of fuzzy semantic-based model to detect plagiarism cases beyond the literal plagiarism. Additionally, the analysis of variance (ANOVA statistical test shows the effectiveness of different segmentation schemes used with the proposed approach.

  12. Study on similar model of high pressure water jet impacting coal rock

    Science.gov (United States)

    Liu, Jialiang; Wang, Mengjin; Zhang, Di

    2017-08-01

    Based on the similarity theory and dimensional analysis, the similarity criterion of the coal rock mechanical parameters were deduced. The similar materials were mainly built by the cement, sand, nitrile rubber powder and polystyrene, by controlling the water-cement ratio, cement-sand ratio, curing time and additives volume ratio. The intervals of the factors were obtained by carrying out series of material compression tests. By comparing the basic mechanical parameters such as the bulk density, compressive strength, Poisson ratio and elastic modulus between the coal rock prototype and similar materials, the optimal producing proposal of the coal rock similar materials was generated based on the orthogonal design tests finally.

  13. Citation Rate Predictors in the Plastic Surgery Literature.

    Science.gov (United States)

    Lopez, Joseph; Calotta, Nicholas; Doshi, Ankur; Soni, Ashwin; Milton, Jacqueline; May, James W; Tufaro, Anthony P

    The purpose of this study is to determine and characterize the scientific and nonscientific factors that influence the rate of article citation in the field of plastic surgery. Cross-sectional study. We reviewed all entries in Annals of Plastic Surgery and Journal of Plastic, Reconstructive, and Aesthetic Surgery from January 1, 2007 to December 31, 2007; and Plastic and Reconstructive Surgery from January 1, 2007 to December 31, 2008. All scientific articles were analyzed and several article characteristics were extracted. The number of citations at 5 years was collected as the outcome variable. A multivariable analysis was performed to determine which variables were associated with higher citations rates. A total of 2456 articles were identified of which only 908 fulfilled the inclusion criteria. Most studies were publications in the fields of reconstructive (26.3%) or pediatric/craniofacial (17.6%) surgery. The median number of citations 5 years from publication was 8. In the multivariable analysis, factors associated with higher citations rates were subspecialty field (p = 0.0003), disclosed conflict of interest (p = 0.04), number of authors (p = 0.04), and journal (p = 0.02). We have found that higher level of evidence (or other study methodology factors) is not associated with higher citation rates. Instead, conflict of interest, subspecialty topic, journal, and number of authors are strong predictors of high citation rates in plastic surgery. Copyright © 2017 Association of Program Directors in Surgery. Published by Elsevier Inc. All rights reserved.

  14. References that anyone can edit: review of Wikipedia citations in peer reviewed health science literature.

    Science.gov (United States)

    Bould, M Dylan; Hladkowicz, Emily S; Pigford, Ashlee-Ann E; Ufholz, Lee-Anne; Postonogova, Tatyana; Shin, Eunkyung; Boet, Sylvain

    2014-03-06

    To examine indexed health science journals to evaluate the prevalence of Wikipedia citations, identify the journals that publish articles with Wikipedia citations, and determine how Wikipedia is being cited. Bibliometric analysis. Publications in the English language that included citations to Wikipedia were retrieved using the online databases Scopus and Web of Science. To identify health science journals, results were refined using Ulrich's database, selecting for citations from journals indexed in Medline, PubMed, or Embase. Using Thomson Reuters Journal Citation Reports, 2011 impact factors were collected for all journals included in the search. Resulting citations were thematically coded, and descriptive statistics were calculated. 1433 full text articles from 1008 journals indexed in Medline, PubMed, or Embase with 2049 Wikipedia citations were accessed. The frequency of Wikipedia citations has increased over time; most citations occurred after December 2010. More than half of the citations were coded as definitions (n = 648; 31.6%) or descriptions (n=482; 23.5%). Citations were not limited to journals with a low or no impact factor; the search found Wikipedia citations in many journals with high impact factors. Many publications are citing information from a tertiary source that can be edited by anyone, although permanent, evidence based sources are available. We encourage journal editors and reviewers to use caution when publishing articles that cite Wikipedia.

  15. Intermittent and continuous high-intensity exercise training induce similar acute but different chronic muscle adaptations.

    Science.gov (United States)

    Cochran, Andrew J R; Percival, Michael E; Tricarico, Steven; Little, Jonathan P; Cermak, Naomi; Gillen, Jenna B; Tarnopolsky, Mark A; Gibala, Martin J

    2014-05-01

    High-intensity interval training (HIIT) performed in an 'all-out' manner (e.g. repeated Wingate tests) is a time-efficient strategy to induce skeletal muscle remodelling towards a more oxidative phenotype. A fundamental question that remains unclear, however, is whether the intermittent or 'pulsed' nature of the stimulus is critical to the adaptive response. In study 1, we examined whether the activation of signalling cascades linked to mitochondrial biogenesis was dependent on the manner in which an acute high-intensity exercise stimulus was applied. Subjects performed either four 30 s Wingate tests interspersed with 4 min of rest (INT) or a bout of continuous exercise (CONT) that was matched for total work (67 ± 7 kJ) and which required ∼4 min to complete as fast as possible. Both protocols elicited similar increases in markers of adenosine monophosphate-activated protein kinase (AMPK) and p38 mitogen-activated protein kinase activation, as well as Peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC-1α) mRNA expression (main effects for time, P ≤ 0.05). In study 2, we determined whether 6 weeks of the CONT protocol (3 days per week) would increase skeletal muscle mitochondrial content to a similar extent to what we have previously reported after 6 weeks of INT. Despite similar acute signalling responses to the CONT and INT protocols, training with CONT did not increase the maximal activity or protein content of a range of mitochondrial markers. However, peak oxygen uptake was higher after CONT training (from 45.7 ± 5.4 to 48.3 ± 6.5 ml kg(-1) min(-1); P < 0.05) and 250 kJ time trial performance was improved (from 26:32 ± 4:48 to 23:55 ± 4:16 min:s; P < 0.001) in our recreationally active participants. We conclude that the intermittent nature of the stimulus is important for maximizing skeletal muscle adaptations to low-volume, all-out HIIT. Despite the lack of skeletal muscle mitochondrial adaptations

  16. Cross-language distributions of high frequency and phonetically similar cognates.

    Science.gov (United States)

    Schepens, Job; Dijkstra, Ton; Grootjen, Franc; van Heuven, Walter J B

    2013-01-01

    The coinciding form and meaning similarity of cognates, e.g. 'flamme' (French), 'Flamme' (German), 'vlam' (Dutch), meaning 'flame' in English, facilitates learning of additional languages. The cross-language frequency and similarity distributions of cognates vary according to evolutionary change and language contact. We compare frequency and orthographic (O), phonetic (P), and semantic similarity of cognates, automatically identified in semi-complete lexicons of six widely spoken languages. Comparisons of P and O similarity reveal inconsistent mappings in language pairs with deep orthographies. The frequency distributions show that cognate frequency is reduced in less closely related language pairs as compared to more closely related languages (e.g., French-English vs. German-English). These frequency and similarity patterns may support a better understanding of cognate processing in natural and experimental settings. The automatically identified cognates are available in the supplementary materials, including the frequency and similarity measurements.

  17. Citation indices for social media articles in urology.

    Science.gov (United States)

    Calopedos, Ross J S; Garcia, Cindy; Rashid, Prem; Murphy, Declan G; Lawrentschuk, Nathan; Woo, Henry H

    2017-05-01

    To evaluate the impact of publications on urological participation in social media (SoMe) by virtue of citations in the urological and non-urological literature. On 15 March 2016, a PubMed search was undertaken using the names of the major SoMe platforms in current use and associated with the field of urology. The search term 'urolog*' was used to specifically capture articles that could be associated with 'urology', 'urologist' or 'urological'. Exclusion criteria for analysis included non-English language articles, articles published for the first time online in any form after 1 March 2015, articles irrelevant to the topic of SoMe, and letters of correspondence. Included articles were then searched in Google Scholar and citations analysed to determine if citations were from the urological literature or non-urological literature. Citations from non-urological journals were considered to be as such even if authored by urologists and on the subject of urology and SoMe. Prior to exclusions as defined in the methods, our PubMed search yielded 232 articles of which 17 were non-English language and 66 had been published after 1 March 2015. Allowing for 12 months after the most recent articles were published, we found that the mean number of total citations in any journal was 20.8. There were more citations in journals not specific to urology, with 8.3 citations in urological journals, compared to 12.6 citations in non-urological journals. Urological SoMe journal articles are highly cited, particularly in the non-urological literature. It is likely that the magnitude of citations has positively contributed to the impact factors of the almost all journals publishing these manuscripts. © 2017 The Authors BJU International © 2017 BJU International Published by John Wiley & Sons Ltd.

  18. High doses of dextromethorphan, an NMDA antagonist, produce effects similar to classic hallucinogens.

    Science.gov (United States)

    Reissig, Chad J; Carter, Lawrence P; Johnson, Matthew W; Mintzer, Miriam Z; Klinedinst, Margaret A; Griffiths, Roland R

    2012-09-01

    Although reports of dextromethorphan (DXM) abuse have increased recently, few studies have examined the effects of high doses of DXM. This study in humans evaluated the effects of supratherapeutic doses of DXM and triazolam. Single, acute oral doses of DXM (100, 200, 300, 400, 500, 600, 700, and 800 mg/70 kg), triazolam (0.25 and 0.5 mg/70 kg), and placebo were administered to 12 healthy volunteers with histories of hallucinogen use, under double-blind conditions, using an ascending dose run-up design. Subjective, behavioral, and physiological effects were assessed repeatedly after drug administration for 6 h. Triazolam produced dose-related increases in subject-rated sedation, observer-rated sedation, and behavioral impairment. DXM produced a profile of dose-related physiological and subjective effects differing from triazolam. DXM effects included increases in blood pressure, heart rate, and emesis; increases in observer-rated effects typical of classic hallucinogens (e.g., distance from reality, visual effects with eyes open and closed, joy, anxiety); and participant ratings of stimulation (e.g., jittery, nervous), somatic effects (e.g., tingling, headache), perceptual changes, end-of-session drug liking, and mystical-type experience. After 400 mg/70 kg DXM, 11 of 12 participants indicated on a pharmacological class questionnaire that they thought they had received a classic hallucinogen (e.g., psilocybin). Drug effects resolved without significant adverse effects by the end of the session. In a 1-month follow-up, volunteers attributed increased spirituality and positive changes in attitudes, moods, and behavior to the session experiences. High doses of DXM produced effects distinct from triazolam and had characteristics that were similar to the classic hallucinogen psilocybin.

  19. High doses of dextromethorphan, an NMDA antagonist, produce effects similar to classic hallucinogens

    Science.gov (United States)

    Carter, Lawrence P.; Johnson, Matthew W.; Mintzer, Miriam Z.; Klinedinst, Margaret A.; Griffiths, Roland R.

    2013-01-01

    Rationale Although reports of dextromethorphan (DXM) abuse have increased recently, few studies have examined the effects of high doses of DXM. Objective This study in humans evaluated the effects of supratherapeutic doses of DXM and triazolam. Methods Single, acute, oral doses of DXM (100, 200, 300, 400, 500, 600, 700, 800 mg/70 kg), triazolam (0.25, 0.5 mg/70kg), and placebo were administered to twelve healthy volunteers with histories of hallucinogen use, under double-blind conditions, using an ascending dose run-up design. Subjective, behavioral, and physiological effects were assessed repeatedly after drug administration for 6 hours. Results Triazolam produced dose-related increases in subject-rated sedation, observer-rated sedation, and behavioral impairment. DXM produced a profile of dose-related physiological and subjective effects differing from triazolam. DXM effects included increases in blood pressure, heart rate, and emesis, increases in observer-rated effects typical of classic hallucinogens (e.g. distance from reality, visual effects with eyes open and closed, joy, anxiety), and participant ratings of stimulation (e.g. jittery, nervous), somatic effects (e.g. tingling, headache), perceptual changes, end-of-session drug liking, and mystical-type experience. After 400 mg/70kg DXM, 11 of 12 participants indicated on a pharmacological class questionnaire that they thought they had received a classic hallucinogen (e.g. psilocybin). Drug effects resolved without significant adverse effects by the end of the session. In a 1-month follow up volunteers attributed increased spirituality and positive changes in attitudes, moods, and behavior to the session experiences. Conclusions High doses of DXM produced effects distinct from triazolam and had characteristics that were similar to the classic hallucinogen psilocybin. PMID:22526529

  20. An Analysis of Peer-Reviewed Scores and Impact Factors with Different Citation Time Windows: A Case Study of 28 Ophthalmologic Journals.

    Science.gov (United States)

    Liu, Xue-Li; Gai, Shuang-Shuang; Zhang, Shi-Le; Wang, Pu

    2015-01-01

    An important attribute of the traditional impact factor was the controversial 2-year citation window. So far, several scholars have proposed using different citation time windows for evaluating journals. However, there is no confirmation whether a longer citation time window would be better. How did the journal evaluation effects of 3IF, 4IF, and 6IF comparing with 2IF and 5IF? In order to understand these questions, we made a comparative study of impact factors with different citation time windows with the peer-reviewed scores of ophthalmologic journals indexed by Science Citation Index Expanded (SCIE) database. The peer-reviewed scores of 28 ophthalmologic journals were obtained through a self-designed survey questionnaire. Impact factors with different citation time windows (including 2IF, 3IF, 4IF, 5IF, and 6IF) of 28 ophthalmologic journals were computed and compared in accordance with each impact factor's definition and formula, using the citation analysis function of the Web of Science (WoS) database. An analysis of the correlation between impact factors with different citation time windows and peer-reviewed scores was carried out. Although impact factor values with different citation time windows were different, there was a high level of correlation between them when it came to evaluating journals. In the current study, for ophthalmologic journals' impact factors with different time windows in 2013, 3IF and 4IF seemed the ideal ranges for comparison, when assessed in relation to peer-reviewed scores. In addition, the 3-year and 4-year windows were quite consistent with the cited peak age of documents published by ophthalmologic journals. Our study is based on ophthalmology journals and we only analyze the impact factors with different citation time window in 2013, so it has yet to be ascertained whether other disciplines (especially those with a later cited peak) or other years would follow the same or similar patterns. We designed the survey questionnaire

  1. An Analysis of Peer-Reviewed Scores and Impact Factors with Different Citation Time Windows: A Case Study of 28 Ophthalmologic Journals.

    Directory of Open Access Journals (Sweden)

    Xue-Li Liu

    Full Text Available An important attribute of the traditional impact factor was the controversial 2-year citation window. So far, several scholars have proposed using different citation time windows for evaluating journals. However, there is no confirmation whether a longer citation time window would be better. How did the journal evaluation effects of 3IF, 4IF, and 6IF comparing with 2IF and 5IF? In order to understand these questions, we made a comparative study of impact factors with different citation time windows with the peer-reviewed scores of ophthalmologic journals indexed by Science Citation Index Expanded (SCIE database.The peer-reviewed scores of 28 ophthalmologic journals were obtained through a self-designed survey questionnaire. Impact factors with different citation time windows (including 2IF, 3IF, 4IF, 5IF, and 6IF of 28 ophthalmologic journals were computed and compared in accordance with each impact factor's definition and formula, using the citation analysis function of the Web of Science (WoS database. An analysis of the correlation between impact factors with different citation time windows and peer-reviewed scores was carried out.Although impact factor values with different citation time windows were different, there was a high level of correlation between them when it came to evaluating journals. In the current study, for ophthalmologic journals' impact factors with different time windows in 2013, 3IF and 4IF seemed the ideal ranges for comparison, when assessed in relation to peer-reviewed scores. In addition, the 3-year and 4-year windows were quite consistent with the cited peak age of documents published by ophthalmologic journals.Our study is based on ophthalmology journals and we only analyze the impact factors with different citation time window in 2013, so it has yet to be ascertained whether other disciplines (especially those with a later cited peak or other years would follow the same or similar patterns.We designed the survey

  2. An Analysis of Peer-Reviewed Scores and Impact Factors with Different Citation Time Windows: A Case Study of 28 Ophthalmologic Journals

    Science.gov (United States)

    Liu, Xue-Li; Gai, Shuang-Shuang; Zhang, Shi-Le; Wang, Pu

    2015-01-01

    Background An important attribute of the traditional impact factor was the controversial 2-year citation window. So far, several scholars have proposed using different citation time windows for evaluating journals. However, there is no confirmation whether a longer citation time window would be better. How did the journal evaluation effects of 3IF, 4IF, and 6IF comparing with 2IF and 5IF? In order to understand these questions, we made a comparative study of impact factors with different citation time windows with the peer-reviewed scores of ophthalmologic journals indexed by Science Citation Index Expanded (SCIE) database. Methods The peer-reviewed scores of 28 ophthalmologic journals were obtained through a self-designed survey questionnaire. Impact factors with different citation time windows (including 2IF, 3IF, 4IF, 5IF, and 6IF) of 28 ophthalmologic journals were computed and compared in accordance with each impact factor’s definition and formula, using the citation analysis function of the Web of Science (WoS) database. An analysis of the correlation between impact factors with different citation time windows and peer-reviewed scores was carried out. Results Although impact factor values with different citation time windows were different, there was a high level of correlation between them when it came to evaluating journals. In the current study, for ophthalmologic journals’ impact factors with different time windows in 2013, 3IF and 4IF seemed the ideal ranges for comparison, when assessed in relation to peer-reviewed scores. In addition, the 3-year and 4-year windows were quite consistent with the cited peak age of documents published by ophthalmologic journals. Research Limitations Our study is based on ophthalmology journals and we only analyze the impact factors with different citation time window in 2013, so it has yet to be ascertained whether other disciplines (especially those with a later cited peak) or other years would follow the same or

  3. Citation Type Analysis on Humanity Literature of Taiwan

    Directory of Open Access Journals (Sweden)

    Ming-Yueh Tsay

    2014-04-01

    Full Text Available Using informetrics and citation analysis, the present study explores and compares characteristics and types of citations in the humanity journal articles that published in Taiwan. Research articles published in 2011, from top humanity journals, assessed by the Institute of Humanities and Social Sciences, National Science Council in Taiwan, were collected and analyzed. The analysis was done by structure of journal article and location of citations. In addition to citations appearing in the text, the phenomena of citation type will be compared and discussed in the latter part. The results of this study revealed articles of literature, history, philosophy and arts were mostly argumentative, while linguistic articles tended to comply with IMRAD (Introduction, Methods and Materials, Results,And Discussion formats. Introducing primary materials from original works, humanity scholars tended to cite for factual descriptions or to support authors’ perspectives. Secondary materials, such as later studies on the original works by other scholars, were seen the most in the disciplines of linguistics while the least in that of history. In general, the distribution of citation types is similar between articles in domestic and foreign journals; merely minor differences occurred among disciplines. While citing characteristics and information needs of humanities scholars revealed in this study may contribute to collection development of libraries or refinement of information services to researchers, suggestions based on analysis of research results may also serve as reference for standardization of writing and publication of journal articles in Taiwan. Aiming at further exploration of citations, this study is expected to provide a better understanding of the nature of citations and to serve as a foundation for future empirical studies.

  4. Citation analysis in research evaluation

    CERN Document Server

    Moed, Henk F

    2005-01-01

    This book is written for members of the scholarly research community, and for persons involved in research evaluation and research policy. More specifically, it is directed towards the following four main groups of readers: - All scientists and scholars who have been or will be subjected to a quantitative assessment of research performance using citation analysis. - Research policy makers and managers who wish to become conversant with the basic features of citation analysis, and about its potentialities and limitations. - Members of peer review committees and other evaluators, who consider th

  5. Similar health benefits of endurance and high-intensity interval training in obese children.

    Directory of Open Access Journals (Sweden)

    Ana Carolina Corte de Araujo

    Full Text Available PURPOSE: To compare two modalities of exercise training (i.e., Endurance Training [ET] and High-Intensity Interval Training [HIT] on health-related parameters in obese children aged between 8 and 12 years. METHODS: Thirty obese children were randomly allocated into either the ET or HIT group. The ET group performed a 30 to 60-minute continuous exercise at 80% of the peak heart rate (HR. The HIT group training performed 3 to 6 sets of 60-s sprint at 100% of the peak velocity interspersed by a 3-min active recovery period at 50% of the exercise velocity. HIT sessions last ~70% less than ET sessions. At baseline and after 12 weeks of intervention, aerobic fitness, body composition and metabolic parameters were assessed. RESULTS: BOTH THE ABSOLUTE (ET: 26.0%; HIT: 19.0% and the relative VO(2 peak (ET: 13.1%; HIT: 14.6% were significantly increased in both groups after the intervention. Additionally, the total time of exercise (ET: 19.5%; HIT: 16.4% and the peak velocity during the maximal graded cardiorespiratory test (ET: 16.9%; HIT: 13.4% were significantly improved across interventions. Insulinemia (ET: 29.4%; HIT: 30.5% and HOMA-index (ET: 42.8%; HIT: 37.0% were significantly lower for both groups at POST when compared to PRE. Body mass was significantly reduced in the HIT (2.6%, but not in the ET group (1.2%. A significant reduction in BMI was observed for both groups after the intervention (ET: 3.0%; HIT: 5.0%. The responsiveness analysis revealed a very similar pattern of the most responsive variables among groups. CONCLUSION: HIT and ET were equally effective in improving important health related parameters in obese youth.

  6. Similar Health Benefits of Endurance and High-Intensity Interval Training in Obese Children

    Science.gov (United States)

    Corte de Araujo, Ana Carolina; Roschel, Hamilton; Picanço, Andreia Rossi; do Prado, Danilo Marcelo Leite; Villares, Sandra Mara Ferreira; de Sá Pinto, Ana Lúcia; Gualano, Bruno

    2012-01-01

    Purpose To compare two modalities of exercise training (i.e., Endurance Training [ET] and High-Intensity Interval Training [HIT]) on health-related parameters in obese children aged between 8 and 12 years. Methods Thirty obese children were randomly allocated into either the ET or HIT group. The ET group performed a 30 to 60-minute continuous exercise at 80% of the peak heart rate (HR). The HIT group training performed 3 to 6 sets of 60-s sprint at 100% of the peak velocity interspersed by a 3-min active recovery period at 50% of the exercise velocity. HIT sessions last ∼70% less than ET sessions. At baseline and after 12 weeks of intervention, aerobic fitness, body composition and metabolic parameters were assessed. Results Both the absolute (ET: 26.0%; HIT: 19.0%) and the relative VO2 peak (ET: 13.1%; HIT: 14.6%) were significantly increased in both groups after the intervention. Additionally, the total time of exercise (ET: 19.5%; HIT: 16.4%) and the peak velocity during the maximal graded cardiorespiratory test (ET: 16.9%; HIT: 13.4%) were significantly improved across interventions. Insulinemia (ET: 29.4%; HIT: 30.5%) and HOMA-index (ET: 42.8%; HIT: 37.0%) were significantly lower for both groups at POST when compared to PRE. Body mass was significantly reduced in the HIT (2.6%), but not in the ET group (1.2%). A significant reduction in BMI was observed for both groups after the intervention (ET: 3.0%; HIT: 5.0%). The responsiveness analysis revealed a very similar pattern of the most responsive variables among groups. Conclusion HIT and ET were equally effective in improving important health related parameters in obese youth. PMID:22880097

  7. Similar health benefits of endurance and high-intensity interval training in obese children.

    Science.gov (United States)

    Corte de Araujo, Ana Carolina; Roschel, Hamilton; Picanço, Andreia Rossi; do Prado, Danilo Marcelo Leite; Villares, Sandra Mara Ferreira; de Sá Pinto, Ana Lúcia; Gualano, Bruno

    2012-01-01

    To compare two modalities of exercise training (i.e., Endurance Training [ET] and High-Intensity Interval Training [HIT]) on health-related parameters in obese children aged between 8 and 12 years. Thirty obese children were randomly allocated into either the ET or HIT group. The ET group performed a 30 to 60-minute continuous exercise at 80% of the peak heart rate (HR). The HIT group training performed 3 to 6 sets of 60-s sprint at 100% of the peak velocity interspersed by a 3-min active recovery period at 50% of the exercise velocity. HIT sessions last ~70% less than ET sessions. At baseline and after 12 weeks of intervention, aerobic fitness, body composition and metabolic parameters were assessed. BOTH THE ABSOLUTE (ET: 26.0%; HIT: 19.0%) and the relative VO(2) peak (ET: 13.1%; HIT: 14.6%) were significantly increased in both groups after the intervention. Additionally, the total time of exercise (ET: 19.5%; HIT: 16.4%) and the peak velocity during the maximal graded cardiorespiratory test (ET: 16.9%; HIT: 13.4%) were significantly improved across interventions. Insulinemia (ET: 29.4%; HIT: 30.5%) and HOMA-index (ET: 42.8%; HIT: 37.0%) were significantly lower for both groups at POST when compared to PRE. Body mass was significantly reduced in the HIT (2.6%), but not in the ET group (1.2%). A significant reduction in BMI was observed for both groups after the intervention (ET: 3.0%; HIT: 5.0%). The responsiveness analysis revealed a very similar pattern of the most responsive variables among groups. HIT and ET were equally effective in improving important health related parameters in obese youth.

  8. A Combination of Citation Analyses Can Reveal the Nature of a Journal’s Scholarly Communication, Its Influence in a Scientific Community, and the Geographic Location of Its Authors and Citers. A review of: Bonnevie‐Nebelong, Ellen. “Methods for Journal Evaluation: Journal Citation Identity, Journal Citation Image, and Internationalisation.” Scientometrics 66.2 (Jan. 2006: 411‐24.

    Directory of Open Access Journals (Sweden)

    Gaby Haddow

    2006-12-01

    journal. A high number of different citing journals implies influence in the field. The N JDF for the sample journals was compared with their Journal Impact Factor (JIF over the same period. Two further analyses of data gathered from 1990 to 2003 were conducted for the Journal of Documentation. The first identified journals most frequently co‐cited with JDOC, an analysis that can locate a journal within or outside its field. Lastly, Internationalisation analyses were carried out for JDOC. Internationalisation relates to the geographic affiliations of authors of JDOC articles and of authors citing JDOC. Geographic affiliation was analysed using three classifications: affiliation in North America, Western Europe, or other geographic locations.Main results –Journal Citation Identity: JASIST was found to have the highest citation/citee ratio at 1.88, while JDOC and JIS had similar ratios of 1.50 and 1.44 respectively. This finding suggests JASIST draws its citations from fewer journals than JDOC and JIS. The scientific content of JDOC ranged from 18% to 50% in the period analysed, the lowest proportion of the three journals. All journals had seen a reduction in the proportion of journal self‐citations over 23 years. Average journal self‐citations for the period were 4.3% for JASIST, 3.9% for JDOC, and 3.4% for JIS.Journal Citation Image: The number of journal self‐citations as a proportion of the total number of citations given to a journal was relatively stable for the three journals in the period 1991‐2003. JASIST had a slightly higher rate at around 30%, the rate for JDOCw as approximately 15%, and JIS showed theg reatest variation ranging from 25% to 12%. In the years 1980 to 1990 JIS was found toh ave a much higher proportion of journal self‐citations, spiking to over 85% in 1986. JDOC and JASIST self‐cited at a rate that differed little over the full 1980 to 2003 period.The average N JDF for JDOC increased from just over 0.3 in 1975 to almost 0.5 in 2003

  9. Patent Citations and Financial Analysts’ Long-Term Growth Forecasts

    Directory of Open Access Journals (Sweden)

    Jincheol Bae

    2017-05-01

    Full Text Available This paper examines the influence of patent citations, a proxy for the quality of firms’ innovation outputs, on financial analysts’ long-term growth forecasts for firms. We find that financial analysts are more likely to issue long-term forecasts for firms with higher patent citations. In addition, we find that financial analysts’ long-term forecasts are more positive for firms with high patent citations. These results imply that patent citations increase financial analysts’ coverage, and result in more positive forecasts for firms with impactful patents. Considering that financial analysts play important roles in allocating financial resources in capital markets, our findings suggest that patents are valuable assets for firms in securing capital from capital markets, and are thus essential for the sustainable growth of firms.

  10. Methodology to unmix spectrally similar minerals using high order derivative spectra

    CSIR Research Space (South Africa)

    Debba, Pravesh

    2009-07-01

    Full Text Available signatures Debba (CSIR) Unmixing spectrally similar minerals Rhodes University 2009 6 / 40 Introduction to Unmixing If research could be as easy as eating a chocolate cake . . . Figure: Can you guess the ingredients for this chocolate cake? Debba (CSIR...) Unmixing spectrally similar minerals Rhodes University 2009 7 / 40 Introduction to Unmixing Ingredients Quantity unsweetened chocolate unsweetened cocoa powder boiling water flour baking powder baking soda salt unsalted butter white sugar eggs...

  11. Impact of Wikipedia on citation trends.

    Science.gov (United States)

    Marashi, Sayed-Amir; Hosseini-Nami, Seyed Mohammad Amin; Alishah, Khadijeh; Hadi, Mahdieh; Karimi, Ali; Hosseinian, Saeedeh; Fard, Rouhallah Ramezani; Mirhassani, Reihaneh Sadat; Hosseini, Zhaleh; Shojaie, Zahra

    2013-01-01

    It has been suggested that the "visibility" of an article influences its citation count. More specifically, it is believed that the social media can influence article citations.Here we tested the hypothesis that inclusion of scholarly references in Wikipedia affects the citation trends. To perform this analysis, we introduced a citation "propensity" measure, which is inspired by the concept of amino acid propensity for protein secondary structures. We show that although citation counts generally increase during time, the citation "propensity" does not increase after inclusion of a reference in Wikipedia.

  12. Research citation analysis of nursing academics in Canada: identifying success indicators.

    Science.gov (United States)

    Hack, Thomas F; Crooks, Dauna; Plohman, James; Kepron, Emma

    2010-11-01

    This article is a report of a citation analysis of research publications by Canadian nursing academics. Citation analysis can yield objective criteria for assessing the value of published research and is becoming increasingly popular as an academic evaluation tool in universities around the world. Citation analysis is useful for examining the research performance of academic researchers and identifying leaders among them. The journal publication records of 737 nursing academics at 33 Canadian universities and schools of nursing were subject to citation analysis using the Scopus database. Three primary types of analysis were performed for each individual: number of citations for each journal publication, summative citation count of all published papers and the Scopus h-index. Preliminary citation analysis was conducted from June to July 2009, with the final analysis performed on 2 October 2009 following e-mail verification of publication lists. The top 20 nursing academics for each of five citation categories are presented: the number of career citations for all publications, number of career citations for first-authored publications, most highly cited first-authored publications, the Scopus h-index for all publications and the Scopus h-index for first-authored publications. Citation analysis metrics are useful for evaluating the research performance of academic researchers in nursing. Institutions are encouraged to protect the research time of successful and promising nursing academics, and to dedicate funds to enhance the research programmes of underperforming academic nursing groups. © 2010 The Authors. Journal of Advanced Nursing © 2010 Blackwell Publishing Ltd.

  13. [The impact factor and citation frequency of Chinese Journal of Ophthalmology from 2000 to 2009].

    Science.gov (United States)

    Wu, Kun-fang; Wen, Feng

    2011-08-01

    From the point of impact factor and citation to evaluate the academic level and influence of Chinese Journal of Ophthalmology (CJO). Using the impact factor (IF) data provided by China Science and Technology Journal Citation Reports (CJCR), and the information of Chinese Medical citation Index (CMCI/CMCC integrated version), the citations from CJO were collected and analyzed with bibliometric methods. From 2000 to 2008, the IF of CJO were 0.573, 0.863, 0.702, 0.745, 0.877, 1.031, 0.807, 0.875 and 0.533. From 2000 to 2009, 2485 papers were published in CJO, 1562 of them were referenced (9294 times). The frequency of total citation rate was 62.86%. The region with the highest citation frequency was Guangdong (2661 times), followed by Beijing (2200 times), Shandong (926 times) and Shanghai (901 times). As to the institution, the top of rank was Zhongshan Ophthalmic Center of Sun Yat-Sen University (with 277 papers, 201 citations and 2193 times of citation frequency) and Beijing Tongren Eye Center (with 197 papers, 106 citations and 507 times of citation frequency). The IF of CJO was stable, and ranked first in domestic academic of Ophthalmology. Meanwhile, it had a higher frequency of Citation, which shows that CJO has high quality and strong influence, and become one of main core ophthalmology journals in China.

  14. Citation Analysis of Hepatitis Monthly by Journal Citation Report (ISI), Google Scholar, and Scopus.

    Science.gov (United States)

    Miri, Seyyed Mohammad; Raoofi, Azam; Heidari, Zahra

    2012-09-01

    Citation analysis as one of the most widely used methods of bibliometrics can be used for computing the various impact measures for scholars based on data from citation databases. Journal Citation Reports (JCR) from Thomson Reuters provides annual report in the form of impact factor (IF) for each journal. We aimed to evaluate the citation parameters of Hepatitis Monthly by JCR in 2010 and compare them with GS and Sc. All articles of Hepat Mon published in 2009 and 2008 which had been cited in 2010 in three databases including WoS, Sc and GS gathered in a spreadsheet. The IFs were manually calculated. Among the 104 total published articles the accuracy rates of GS and Sc in recording the total number of articles was 96% and 87.5%. There was a difference between IFs among the three databases (0.793 in ISI [Institute for Scientific Information], 0.945 in Sc and 0.85 GS). The missing rate of citations in ISI was 4% totally. Original articles were the main cited types, whereas, guidelines and clinical challenges were the least ones. None of the three databases succeed to record all articles published in the journal. Despite high sensitivity of GS comparing to Sc, it cannot be a reliable source for indexing since GS has lack of screening in the data collection and low specificity. Using an average of three IFs is suggested to find the correct IF. Editors should be more aware on the role of original articles in increasing IF and the potential efficacy of review articles in long term impact factor.

  15. [Medicina Clinica (1992-1993) seen through the Science Citation Index].

    Science.gov (United States)

    Gómez, I; Coma, L; Morillo, F; Camí, J

    1997-10-18

    MEDICINA CLINICA has been indexed in the Science Citation Index (SCI) database since 1992, listed in the category Medicine, General & Internal, and its impact factor in 1993 was 0.909. Two years as source journal in the SCI database provide enough information to assess its contribution to the international scientific scenario. Publications of Spanish authors in MEDICINA CLINICA during 1992 and 1993 were retrieved from the SCI. Document types, geographic distribution, institutional sectors, subjects and most productive centers were analyzed. All documents retrieved from the SCI were compared manually with those published in the journal itself. Citations received until November 1996 were collected and reference patterns assessed. MEDICINA CLINICA was in the upper third of the list of journals of its category ranked by their impact factor. As other general medical journals, it was characterized by the publication of a high number of letters to the editor (48% of documents) and of articles susceptible of being classified in other disciplines according to their contents. Main topics of documents authored by Spanish authors included: Infectious Diseases (15%), Pharmacy/Pharmacology (8.8%), Cancer/Oncology (7.2%), Cardiovascular System (4.9%), Epidemiology/Public Health (4.5%), Endocrinology/Metabolism (4%) and Neurosciences/Neurology (4%). Only 32% of studies corresponding to citable items had been carried out in Barcelona, the city in which the journal is published, 19.5% in Madrid, and almost 9% in Andalucia. Around 66% of articles and only 25% of letters have received at least one citation, with a mean number of citations of 2.83 for articles and 1.3 for letters. Self-citations from other documents published in the same journal were high (77.8% for articles) as compared with citations received from other international SCI journals. Reference patterns found in MEDICINA CLINICA were similar to those of high-ranking journals of the same category. The comparison of

  16. Citation bias in reported smoking prevalence in people with schizophrenia.

    Science.gov (United States)

    Chapman, Simon; Ragg, Mark; McGeechan, Kevin

    2009-03-01

    A meta-analysis of 42 studies on tobacco smoking among schizophrenia subjects found an average smoking prevalence of 62% (range=14-88%). Statements are common, however, in the research literature and the media that between 80% and 90% of people with schizophrenia smoke. The purpose of the present paper was therefore to determine if citation bias exists in the over-citation and reportage of studies finding high rates of smoking prevalence in schizophrenia subjects. Two hypotheses were tested: (i) that studies on the prevalence of smoking in people with schizophrenia reporting high smoking rates would be cited more often than studies reporting lower rates; and (ii) that statements about smoking rates among schizophrenic people on the Internet would report very high rates more often than more realistic, less dramatic rates. A 10% increase in reported prevalence of smoking was associated with a 61% (95% confidence interval (CI)=30-98%) increase in citation rate. Journal impact factor (IF) was significantly associated with citation rate (p=0.001) but the country in which a study was carried out did not have an effect (p=0.90). After adjusting for IF, a 10% increase in prevalence of smoking was associated with a 28% increase (95%CI=1-62%) in citation rate. This bias is mirrored on the Internet, where statements abound about uncommonly highly rates of smoking by people with schizophrenia. Studies reporting very high prevalence of smoking among people with schizophrenia are cited more often than those studies reporting a low prevalence, a result consistent with citation bias. This citation bias probably contributes to the misinformation available on the Internet, and may have adverse policy and clinical implications.

  17. Citations and references as keys to relevance ranking in interactive IR

    DEFF Research Database (Denmark)

    Ingwersen, Peter

    2012-01-01

    According to the principle of Polyrepresentation (Ingwersen & Järvelin, 2005; Ingwersen, 2012) bibliographic references in scientific documents as well as citations to documents have the potential of serving as useful features for re-ranking of retrieved documents. References (and thus citations...... been demonstrated to improve retrieval performance (Skov et al. 2008), whereas the number of citations has not provided similar improvements. The presentation will discuss the following phenomena and characteristics of references and citations as means for relevance re-ranking: 1) Are academic...

  18. Citation analysis of Canadian psycho-oncology and supportive care researchers.

    Science.gov (United States)

    Hack, Thomas F; Crooks, Dauna; Plohman, James; Kepron, Emma

    2014-02-01

    The purpose of this study was to conduct a historical review of psycho-oncology and supportive care research in Canada using citation analysis and to review the clinical impact of the research conducted by the most highly cited researchers. The lifetime journal publication records of 109 psycho-oncology and supportive care researchers in Canada were subject to citation analysis using the Scopus database, based on citations since 1996 of articles deemed relevant to psychosocial oncology and supportive care, excluding self-citations. Three primary types of analysis were performed for each individual: the number of citations for each journal publication, a summative citation count of all published articles, and the Scopus h-index. The top 20 psycho-oncology/supportive care researchers for each of five citation categories are presented: the number of citations for all publications; the number of citations for first-authored publications; the most highly cited first-authored publications; the Scopus h-index for all publications; and the Scopus h-index for first-authored publications. The three most highly cited Canadian psycho-oncology researchers are Dr. Kerry Courneya (University of Alberta), Dr. Lesley Degner, (University of Manitoba), and Dr. Harvey Chochinov (University of Manitoba). Citation analysis is useful for examining the research performance of psycho-oncology and supportive care researchers and identifying leaders among them.

  19. The Rise and Rise of Citation Analysis

    OpenAIRE

    Meho, Lokman I.

    2006-01-01

    With the vast majority of scientific papers now available online, the author describes how the Web is allowing physicists and information providers to measure more accurately the impact of these papers and their authors. Provides a historical background of citation analysis, ISI's citation databases, and the impact factor. Discusses the strengths and weaknesses of Web of Science and other more recent citation data sources (e.g., Scopus and Google Scholar), the impact of the Web on citation...

  20. [In Process Citation].

    Science.gov (United States)

    Fófano do Lago, Márcia; Chaia Kaippert, Vanessa; Lopes Souto, Débora; Lopes Rosado, Eliane

    2016-03-25

    Introducción: el tipo de ácido graso de la dieta presenta diferentes efectos sobre la obesidad y sus complicaciones, pero estos efectos pueden verse influenciados por los genes y sus polimorfismos, tales como los receptores activados por el proliferador de los peroxisomas isoforma γ2 (PPARγ2). Además, no está claro si el grado de insaturación de los lípidos posee diferentes efectos en el metabolismo de los lípidos y de la glucosa y, particularmente, en la pérdida de peso. Objetivos: evaluar la influencia de dietas ricas en ácidos grasos poliinsaturados (AGPI) y monoinsaturados (AGMI) en las variables antropométricas y bioquímicas en el peso corporal y el perfil glucémico y lipémico en mujeres obesas con el genotipo Pro12Pro en el gen PPARγ2. Métodos: dieciocho mujeres obesas con genotipo Pro12Pro fueron distribuidas aleatoriamente para una de las dietas, rica en AGPI (n = 8) o AGMI (n = 10). Las variables antropométricas (índice de masa corporal [IMC] y circunferencia de la cintura) y bioquímicas (glucosa, insulina, HOMA-IR, colesterol total, LDL-colesterol, HDL colesterol y triglicéridos) fueron evaluadas antes y después de un periodo de 45 días. Resultados: las variables antropométricas y bioquímicas fueron similares entre los grupos antes y después de la intervención (p > 0,05). El IMC disminuyó después de la ingesta de AGPI (p = 0,01), probablemente debido al menor contenido de lípidos. El AGMI redujo la glucosa (p = 0,03), insulina (p = 0,03) y HOMA-IR (p = 0,02). Conclusión: los AGMI fueron más eficientes para reducir la resistencia a la insulina en mujeres obesas con el genotipo Pro12Pro en el gen PPARγ2, aunque las mujeres presentaran una elevada ingesta de lípidos totales y ácidos grasos saturados.

  1. Kinesiology Faculty Citations across Academic Rank

    Science.gov (United States)

    Knudson, Duane

    2015-01-01

    Citations to research reports are used as a measure for the influence of a scholar's research line when seeking promotion, grants, and awards. The current study documented the distributions of citations to kinesiology scholars of various academic ranks. Google Scholar Citations was searched for user profiles using five research interest areas…

  2. Effective Strategies for Increasing Citation Frequency

    Science.gov (United States)

    Ebrahim, Nader Ale; Salehi, Hadi; Embi, Mohamed Amin; Tanha, Farid Habibi; Gholizadeh, Hossein; Motahar, Seyed Mohammad; Ordi, Ali

    2013-01-01

    Due to the effect of citation impact on The Higher Education (THE) world university ranking system, most of the researchers are looking for some helpful techniques to increase their citation record. This paper by reviewing the relevant articles extracts 33 different ways for increasing the citations possibilities. The results show that the article…

  3. Ranking national research systems by citation indicators

    DEFF Research Database (Denmark)

    Aksnes, Dag W.; Schneider, Jesper Wiborg; Gunnarsson, Magnus

    2012-01-01

    This paper presents an empirical analysis of two different methodologies for calculating national citation indicators: whole counts and fractionalised counts. The aim of our study is to investigate the effect on relative citation indicators when citations to documents are fractionalised among the...

  4. Writing references and using citation management software

    Science.gov (United States)

    Sungur, Mukadder Orhan; Seyhan, Tülay Özkan

    2013-01-01

    The correct citation of references is obligatory to gain scientific credibility, to honor the original ideas of previous authors and to avoid plagiarism. Currently, researchers can easily find, cite and store references using citation management software. In this review, two popular citation management software programs (EndNote and Mendeley) are summarized. PMID:26328132

  5. 27 CFR 71.73 - After citation.

    Science.gov (United States)

    2010-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 2 2010-04-01 2010-04-01 false After citation. 71.73 Section 71.73 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT... Procedure Surrender of Permit § 71.73 After citation. If a respondent surrenders the permit after citation...

  6. 78 FR 4766 - Authority Citation Correction

    Science.gov (United States)

    2013-01-23

    ... COMMISSION 17 CFR Part 200 Authority Citation Correction AGENCY: Securities and Exchange Commission. ACTION... citation. The Commission is publishing this technical amendment to accurately reflect the authority citation in the Code of Federal Regulations. DATES: Effective Date: January 23, 2013. FOR FURTHER...

  7. Writing references and using citation management software.

    Science.gov (United States)

    Sungur, Mukadder Orhan; Seyhan, Tülay Özkan

    2013-09-01

    The correct citation of references is obligatory to gain scientific credibility, to honor the original ideas of previous authors and to avoid plagiarism. Currently, researchers can easily find, cite and store references using citation management software. In this review, two popular citation management software programs (EndNote and Mendeley) are summarized.

  8. Citation Analysis and Discourse Analysis Revisited

    Science.gov (United States)

    White, Howard D.

    2004-01-01

    John Swales's 1986 article "Citation analysis and discourse analysis" was written by a discourse analyst to introduce citation research from other fields, mainly sociology of science, to his own discipline. Here, I introduce applied linguists and discourse analysts to citation studies from information science, a complementary tradition not…

  9. Quality Weighted Citations Versus Total Citations in the Sciences and Social Sciences

    NARCIS (Netherlands)

    C-L. Chang (Chia-Lin); M.J. McAleer (Michael)

    2014-01-01

    markdownabstract__Abstract__ The paper analyses academic journal quality and research impact using quality weighted citations versus total citations, based on the widely-used Thomson Reuters ISI Web of Science citations database (ISI). A new Index of Citations Quality (ICQ) is presented, based on

  10. Quality Weighted Citations versus Total Citations in the Sciences and Social Sciences

    NARCIS (Netherlands)

    C-L. Chang (Chia-Lin); M.J. McAleer (Michael)

    2014-01-01

    markdownabstract__Abstract__ The paper analyses academic journal quality and research impact using quality weighted citations versus total citations, based on the widely-used Thomson Reuters ISI Web of Science citations database (ISI). A new Index of Citations Quality (ICQ) is presented, based on

  11. Highest Impact Articles in Microsurgery: A Citation Analysis.

    Science.gov (United States)

    Kim, Kuylhee; Ibrahim, Ahmed M S; Koolen, Pieter G L; Markarian, Mark K; Lee, Bernard T; Lin, Samuel J

    2015-09-01

    Microsurgery has developed significantly since the inception of the first surgical microscope. There have been few attempts to describe "classic" microsurgery articles. In this study citation analysis was done to identify the most highly cited clinical and basic science articles published in five peer-reviewed plastic surgery journals. Thomson/Reuters web of knowledge was used to identify the most highly cited microsurgery articles from five journals: Plastic and Reconstructive Surgery, Annals of Plastic Surgery, Journal of Plastic, Reconstructive & Aesthetic Surgery, Journal of Reconstructive Microsurgery, and Microsurgery. Articles were identified and sorted based on the number of citations and citations per year. The 50 most cited clinical and basic science articles were identified. For clinical articles, number of total citations ranged from 120 to 691 (mean, 212.38) and citations per year ranged from 30.92 to 3.05 (mean, 9.33). The most common defect site was the head and neck (n = 15, 30%), and flaps were perforator and muscle/musculocutaneous flaps (n = 10 each, 20%, respectively). For basic science articles, number of citations ranged from 71 to 332 (mean, 130.82) and citations per year ranged from 2.20 to 11.07 (mean, 5.27). There were 27 animal, 21 cadaveric, and 2 combined studies. The most highly cited microsurgery articles are a direct reflection of the educational and clinical trends. Awareness of the most frequently cited articles may serve as a basis for core knowledge in the education of plastic surgery trainees. III. Thieme Medical Publishers 333 Seventh Avenue, New York, NY 10001, USA.

  12. Link Label Prediction in Signed Citation Network

    KAUST Repository

    Akujuobi, Uchenna

    2016-04-12

    Link label prediction is the problem of predicting the missing labels or signs of all the unlabeled edges in a network. For signed networks, these labels can either be positive or negative. In recent years, different algorithms have been proposed such as using regression, trust propagation and matrix factorization. These approaches have tried to solve the problem of link label prediction by using ideas from social theories, where most of them predict a single missing label given that labels of other edges are known. However, in most real-world social graphs, the number of labeled edges is usually less than that of unlabeled edges. Therefore, predicting a single edge label at a time would require multiple runs and is more computationally demanding. In this thesis, we look at link label prediction problem on a signed citation network with missing edge labels. Our citation network consists of papers from three major machine learning and data mining conferences together with their references, and edges showing the relationship between them. An edge in our network is labeled either positive (dataset relevant) if the reference is based on the dataset used in the paper or negative otherwise. We present three approaches to predict the missing labels. The first approach converts the label prediction problem into a standard classification problem. We then, generate a set of features for each edge and then adopt Support Vector Machines in solving the classification problem. For the second approach, we formalize the graph such that the edges are represented as nodes with links showing similarities between them. We then adopt a label propagation method to propagate the labels on known nodes to those with unknown labels. In the third approach, we adopt a PageRank approach where we rank the nodes according to the number of incoming positive and negative edges, after which we set a threshold. Based on the ranks, we can infer an edge would be positive if it goes a node above the

  13. Self-citation of Medical and Non-medical Universities in Northern Iran.

    Science.gov (United States)

    Jahani, Mohammad Ali; Yaminfirooz, Mousa

    2016-12-01

    Self-citation is one of the main challenges in the evaluation of researchers' scientific output. This study aimed at comparing the institutional self-citation among the universities located in Northern Iran. This study was conducted as a scientometric study. Research population included all scientific productions of 16 Northern Iran Universities with at least 100 indexed documents indexed in the Web of Science (WoS) by 2 June 2015. The citation analysis section of WoS was used for data collection. SPSS was applied for data analysis. Study hypotheses were tested with two independent sample t-test and paired sample t-test. Producing 16,399 papers, northern Iran universities had 5.33% of contribution in Iran's scientific production. They received 84,058 citations with 17% and 12% of self-citations belonged to the non-medical and medical universities, respectively. Testing hypotheses revealed that increase in received citations significantly increases the rate of self-citation and increase in scientific production does not necessarily increase the rate of self-citation. The rate of self-citation in the studied universities was not relatively high. However, investigating into the factors affecting the rate of and motives for self-citation needs further research.

  14. Student Perceptions of Safety in Perceived Similar and Nonsimilar Race High Schools

    Science.gov (United States)

    Thibodeaux, Jarrett

    2013-01-01

    Despite the large body of research on neighborhood racial composition and perceptions of safety, only one geographically limited study has investigated the relation between school racial composition and student perceptions of safety. Using data from a 2010 national sample of high school seniors, this study found that being in a mostly-same-race…

  15. Earliest Memories and Recent Memories of Highly Salient Events--Are They Similar?

    Science.gov (United States)

    Peterson, Carole; Fowler, Tania; Brandeau, Katherine M.

    2015-01-01

    Four- to 11-year-old children were interviewed about 2 different sorts of memories in the same home visit: recent memories of highly salient and stressful events--namely, injuries serious enough to require hospital emergency room treatment--and their earliest memories. Injury memories were scored for amount of unique information, completeness…

  16. Similarities between Students Receiving Dress Code Violations and Discipline Referrals at Newport Junior High School

    Science.gov (United States)

    Nicholson, Nikki

    2007-01-01

    Background: Looking at dress code violations and demographics surrounding kids breaking the rules. Purpose: To see if there is a connection between dress code violations and discipline referrals. Setting: Jr. High School; Study Sample: Students with dress code violations for one week; Intervention: N/A; Research Design: Correlational; and Control…

  17. Assessment of similarity of HFBR (High Flux Beam Reactor) with separate effects test

    Energy Technology Data Exchange (ETDEWEB)

    Rohatgi, U.S.; Slovik, G.C.

    1990-11-01

    A Separate Effects Test (SET) facility was constructed in 1963 to demonstrate the feasibility of the HFBR design and to determine the core power limits for a safe flow reversal event. The objective of the task reported here is to review the capability of the test to scale the dominant phenomena in the HFBR during a flow reversal event and the applicability of the range of the power level obtained from the test to the HFBR. The conclusion of this report was that the flow during the flow reversal event will not be similar in the two facilities. The causes of the dissimilarity are the differences in the core inlet friction, bypass path friction, the absence of the check valve in the test, and the materials used to represent the fuel plates. The impact of these differences is that the HFBR will undergo flow reversal sooner than the test and will have a higher flow rate in the final Natural Circulation Period. The shorter duration of the flow reversal event will allow less time for the plate to heat up and the larger flow in the Natural Circulation Period will lead to higher critical heat flux limits in the HFBR than in the test. Based on these observations, it was concluded that the HFBR can undergo flow reversal safely for heat fluxes up to 46,700 (BTU/hr ft{sup 2}), the heat flux limit obtained from the 1963 test.

  18. Vocal neighbour-mate discrimination in female great tits despite high song similarity

    DEFF Research Database (Denmark)

    Blumenrath, Sandra H.; Dabelsteen, Torben; Pedersen, Simon Boel

    2007-01-01

    are important, and the female's ability to recognize her mate's song should therefore be adaptive. In a neighbour-mate discrimination playback experiment, we presented 13 incubating great tit females situated inside nestboxes with a song of their mate and the same song type from a neighbour. Each female...... differences between their mate's song and a neighbour's rendition of the same song type despite being inside nestboxes, which are known to alter the received song structure and intensity. We suggest that this female discrimination ability inside nest holes is mediated by a high perceptual sensitivity towards......Discrimination between conspecifics is important in mediating social interactions between several individuals in a network environment. In great tits, Parus major, females readily distinguish between the songs of their mate and those of a stranger. The high degree of song sharing among neighbouring...

  19. Scientific citations favor positive results: a systematic review and meta-analysis.

    Science.gov (United States)

    Duyx, Bram; Urlings, Miriam J E; Swaen, Gerard M H; Bouter, Lex M; Zeegers, Maurice P

    2017-08-01

    Citation bias concerns the selective citation of scientific articles based on their results. We brought together all available evidence on citation bias across scientific disciplines and quantified its impact. An extensive search strategy was applied to the Web of Science Core Collection and Medline, yielding 52 studies in total. We classified these studies on scientific discipline, selection method, and other variables. We also performed random-effects meta-analyses to pool the effect of positive vs. negative results on subsequent citations. Finally, we checked for other determinants of citation as reported in the citation bias literature. Evidence for the occurrence of citation bias was most prominent in the biomedical sciences and least in the natural sciences. Articles with statistically significant results were cited 1.6 (95% confidence interval [CI] 1.3-1.8) times more often than articles with nonsignificant results. Articles in which the authors explicitly conclude to have found support for their hypothesis were cited 2.7 (CI 2.0-3.7) times as often. Article results and journal impact factor were associated with citation more often than any other reported determinant. Similar to what we already know on publication bias, also citation bias can lead to an overrepresentation of positive results and unfounded beliefs. Copyright © 2017 Elsevier Inc. All rights reserved.

  20. Growing complex network of citations of scientific papers: Modeling and measurements

    Science.gov (United States)

    Golosovsky, Michael; Solomon, Sorin

    2017-01-01

    We consider the network of citations of scientific papers and use a combination of the theoretical and experimental tools to uncover microscopic details of this network growth. Namely, we develop a stochastic model of citation dynamics based on the copying-redirection-triadic closure mechanism. In a complementary and coherent way, the model accounts both for statistics of references of scientific papers and for their citation dynamics. Originating in empirical measurements, the model is cast in such a way that it can be verified quantitatively in every aspect. Such validation is performed by measuring citation dynamics of physics papers. The measurements revealed nonlinear citation dynamics, the nonlinearity being intricately related to network topology. The nonlinearity has far-reaching consequences including nonstationary citation distributions, diverging citation trajectories of similar papers, runaways or "immortal papers" with infinite citation lifetime, etc. Thus nonlinearity in complex network growth is our most important finding. In a more specific context, our results can be a basis for quantitative probabilistic prediction of citation dynamics of individual papers and of the journal impact factor.

  1. Similar health benefits of endurance and high-intensity interval training in obese children

    OpenAIRE

    Ana Carolina Corte de Araujo; Hamilton Roschel; Andreia Rossi Picanço; Danilo Marcelo Leite do Prado; Sandra Mara Ferreira Villares; Ana Lúcia de Sá Pinto; Bruno Gualano

    2013-01-01

    Purpose: To compare two modalities of exercise training (i.e., Endurance Training [ET] and High-Intensity Interval Training [HIT]) on health-related parameters in obese children aged between 8 and 12 years. Methods: Thirty obese children were randomly allocated into either the ET or HIT group. The ET group performed a 30 to 60-minute continuous exercise at 80% of the peak heart rate (HR). The HIT group training performed 3 to 6 sets of 60-s sprint at 100% of the peak velocity interspersed by ...

  2. Single nucleus genome sequencing reveals high similarity among nuclei of an endomycorrhizal fungus.

    Directory of Open Access Journals (Sweden)

    Kui Lin

    2014-01-01

    Full Text Available Nuclei of arbuscular endomycorrhizal fungi have been described as highly diverse due to their asexual nature and absence of a single cell stage with only one nucleus. This has raised fundamental questions concerning speciation, selection and transmission of the genetic make-up to next generations. Although this concept has become textbook knowledge, it is only based on studying a few loci, including 45S rDNA. To provide a more comprehensive insight into the genetic makeup of arbuscular endomycorrhizal fungi, we applied de novo genome sequencing of individual nuclei of Rhizophagus irregularis. This revealed a surprisingly low level of polymorphism between nuclei. In contrast, within a nucleus, the 45S rDNA repeat unit turned out to be highly diverged. This finding demystifies a long-lasting hypothesis on the complex genetic makeup of arbuscular endomycorrhizal fungi. Subsequent genome assembly resulted in the first draft reference genome sequence of an arbuscular endomycorrhizal fungus. Its length is 141 Mbps, representing over 27,000 protein-coding gene models. We used the genomic sequence to reinvestigate the phylogenetic relationships of Rhizophagus irregularis with other fungal phyla. This unambiguously demonstrated that Glomeromycota are more closely related to Mucoromycotina than to its postulated sister Dikarya.

  3. Database citation in full text biomedical articles.

    Science.gov (United States)

    Kafkas, Şenay; Kim, Jee-Hyub; McEntyre, Johanna R

    2013-01-01

    Molecular biology and literature databases represent essential infrastructure for life science research. Effective integration of these data resources requires that there are structured cross-references at the level of individual articles and biological records. Here, we describe the current patterns of how database entries are cited in research articles, based on analysis of the full text Open Access articles available from Europe PMC. Focusing on citation of entries in the European Nucleotide Archive (ENA), UniProt and Protein Data Bank, Europe (PDBe), we demonstrate that text mining doubles the number of structured annotations of database record citations supplied in journal articles by publishers. Many thousands of new literature-database relationships are found by text mining, since these relationships are also not present in the set of articles cited by database records. We recommend that structured annotation of database records in articles is extended to other databases, such as ArrayExpress and Pfam, entries from which are also cited widely in the literature. The very high precision and high-throughput of this text-mining pipeline makes this activity possible both accurately and at low cost, which will allow the development of new integrated data services.

  4. Cortical cytasters: a highly conserved developmental trait of Bilateria with similarities to Ctenophora

    Directory of Open Access Journals (Sweden)

    Salinas-Saavedra Miguel

    2011-12-01

    Full Text Available Abstract Background Cytasters (cytoplasmic asters are centriole-based nucleation centers of microtubule polymerization that are observable in large numbers in the cortical cytoplasm of the egg and zygote of bilaterian organisms. In both protostome and deuterostome taxa, cytasters have been described to develop during oogenesis from vesicles of nuclear membrane that move to the cortical cytoplasm. They become associated with several cytoplasmic components, and participate in the reorganization of cortical cytoplasm after fertilization, patterning the antero-posterior and dorso-ventral body axes. Presentation of the hypothesis The specific resemblances in the development of cytasters in both protostome and deuterostome taxa suggest that an independent evolutionary origin is unlikely. An assessment of published data confirms that cytasters are present in several protostome and deuterostome phyla, but are absent in the non-bilaterian phyla Cnidaria and Ctenophora. We hypothesize that cytasters evolved in the lineage leading to Bilateria and were already present in the most recent common ancestor shared by protostomes and deuterostomes. Thus, cytasters would be an ancient and highly conserved trait that is homologous across the different bilaterian phyla. The alternative possibility is homoplasy, that is cytasters have evolved independently in different lineages of Bilateria. Testing the hypothesis So far, available published information shows that appropriate observations have been made in eight different bilaterian phyla. All of them present cytasters. This is consistent with the hypothesis of homology and conservation. However, there are several important groups for which there are no currently available data. The hypothesis of homology predicts that cytasters should be present in these groups. Increasing the taxonomic sample using modern techniques uniformly will test for evolutionary patterns supporting homology, homoplasy, or secondary loss of

  5. Cortical cytasters: a highly conserved developmental trait of Bilateria with similarities to Ctenophora.

    Science.gov (United States)

    Salinas-Saavedra, Miguel; Vargas, Alexander O

    2011-12-01

    Cytasters (cytoplasmic asters) are centriole-based nucleation centers of microtubule polymerization that are observable in large numbers in the cortical cytoplasm of the egg and zygote of bilaterian organisms. In both protostome and deuterostome taxa, cytasters have been described to develop during oogenesis from vesicles of nuclear membrane that move to the cortical cytoplasm. They become associated with several cytoplasmic components, and participate in the reorganization of cortical cytoplasm after fertilization, patterning the antero-posterior and dorso-ventral body axes. The specific resemblances in the development of cytasters in both protostome and deuterostome taxa suggest that an independent evolutionary origin is unlikely. An assessment of published data confirms that cytasters are present in several protostome and deuterostome phyla, but are absent in the non-bilaterian phyla Cnidaria and Ctenophora. We hypothesize that cytasters evolved in the lineage leading to Bilateria and were already present in the most recent common ancestor shared by protostomes and deuterostomes. Thus, cytasters would be an ancient and highly conserved trait that is homologous across the different bilaterian phyla. The alternative possibility is homoplasy, that is cytasters have evolved independently in different lineages of Bilateria. So far, available published information shows that appropriate observations have been made in eight different bilaterian phyla. All of them present cytasters. This is consistent with the hypothesis of homology and conservation. However, there are several important groups for which there are no currently available data. The hypothesis of homology predicts that cytasters should be present in these groups. Increasing the taxonomic sample using modern techniques uniformly will test for evolutionary patterns supporting homology, homoplasy, or secondary loss of cytasters. If cytasters are homologous and highly conserved across bilateria, their potential

  6. A Falsification of the Citation Impediment in the Taxonomic Literature.

    Science.gov (United States)

    Steiner, Florian M; Pautasso, Marco; Zettel, Herbert; Moder, Karl; Arthofer, Wolfgang; Schlick-Steiner, Birgit C

    2015-09-01

    Current science evaluation still relies on citation performance, despite criticisms of purely bibliometric research assessments. Biological taxonomy suffers from a drain of knowledge and manpower, with poor citation performance commonly held as one reason for this impediment. But is there really such a citation impediment in taxonomy? We compared the citation numbers of 306 taxonomic and 2291 non-taxonomic research articles (2009-2012) on mosses, orchids, ciliates, ants, and snakes, using Web of Science (WoS) and correcting for journal visibility. For three of the five taxa, significant differences were absent in citation numbers between taxonomic and non-taxonomic papers. This was also true for all taxa combined, although taxonomic papers received more citations than non-taxonomic ones. Our results show that, contrary to common belief, taxonomic contributions do not generally reduce a journal's citation performance and might even increase it. The scope of many journals rarely featuring taxonomy would allow editors to encourage a larger number of taxonomic submissions. Moreover, between 1993 and 2012, taxonomic publications accumulated faster than those from all biological fields. However, less than half of the taxonomic studies were published in journals in WoS. Thus, editors of highly visible journals inviting taxonomic contributions could benefit from taxonomy's strong momentum. The taxonomic output could increase even more than at its current growth rate if: (i) taxonomists currently publishing on other topics returned to taxonomy and (ii) non-taxonomists identifying the need for taxonomic acts started publishing these, possibly in collaboration with taxonomists. Finally, considering the high number of taxonomic papers attracted by the journal Zootaxa, we expect that the taxonomic community would indeed use increased chances of publishing in WoS indexed journals. We conclude that taxonomy's standing in the present citation-focused scientific landscape could

  7. Competitive Funding, Citation Regimes, and the Diminishment of Breakthrough Research

    Science.gov (United States)

    Young, Mitchell

    2015-01-01

    At first glance Sweden looks like a researcher's paradise with high levels of GDP investment in research and high scores on citation indexes, yet recent studies have suggested that Sweden might be losing its edge in groundbreaking research. This paper explores why that is happening by examining researchers' logics of decision-making at a large…

  8. Functions of Uni- and Multi-citations: Implications for Weighted Citation Analysis

    Directory of Open Access Journals (Sweden)

    Dangzhi Zhao

    2017-01-01

    Full Text Available Purpose: (1 To test basic assumptions underlying frequency-weighted citation analysis: (a Uni-citations correspond to citations that are nonessential to the citing papers; (b The influence of a cited paper on the citing paper increases with the frequency with which it is cited in the citing paper. (2 To explore the degree to which citation location may be used to help identify nonessential citations. Design/methodology/approach: Each of the in-text citations in all research articles published in Issue 1 of the Journal of the Association for Information Science and Technology (JASIST 2016 was manually classified into one of these five categories: Applied, Contrastive, Supportive, Reviewed, and Perfunctory. The distributions of citations at different in-text frequencies and in different locations in the text by these functions were analyzed. Findings: Filtering out nonessential citations before assigning weight is important for frequency-weighted citation analysis. For this purpose, removing citations by location is more effective than re-citation analysis that simply removes uni-citations. Removing all citation occurrences in the Background and Literature Review sections and uni-citations in the Introduction section appears to provide a good balance between filtration and error rates. Research limitations: This case study suffers from the limitation of scalability and generalizability. We took careful measures to reduce the impact of other limitations of the data collection approach used. Relying on the researcher’s judgment to attribute citation functions, this approach is unobtrusive but speculative, and can suffer from a low degree of confidence, thus creating reliability concerns. Practical implications: Weighted citation analysis promises to improve citation analysis for research evaluation, knowledge network analysis, knowledge representation, and information retrieval. The present study showed the importance of filtering out nonessential

  9. A Large-Scale Analysis of Impact Factor Biased Journal Self-Citations.

    Science.gov (United States)

    Chorus, Caspar; Waltman, Ludo

    2016-01-01

    Based on three decades of citation data from across scientific fields of science, we study trends in impact factor biased self-citations of scholarly journals, using a purpose-built and easy to use citation based measure. Our measure is given by the ratio between i) the relative share of journal self-citations to papers published in the last two years, and ii) the relative share of journal self-citations to papers published in preceding years. A ratio higher than one suggests that a journal's impact factor is disproportionally affected (inflated) by self-citations. Using recently reported survey data, we show that there is a relation between high values of our proposed measure and coercive journal self-citation malpractices. We use our measure to perform a large-scale analysis of impact factor biased journal self-citations. Our main empirical result is, that the share of journals for which our measure has a (very) high value has remained stable between the 1980s and the early 2000s, but has since risen strongly in all fields of science. This time span corresponds well with the growing obsession with the impact factor as a journal evaluation measure over the last decade. Taken together, this suggests a trend of increasingly pervasive journal self-citation malpractices, with all due unwanted consequences such as inflated perceived importance of journals and biased journal rankings.

  10. A Large-Scale Analysis of Impact Factor Biased Journal Self-Citations.

    Directory of Open Access Journals (Sweden)

    Caspar Chorus

    Full Text Available Based on three decades of citation data from across scientific fields of science, we study trends in impact factor biased self-citations of scholarly journals, using a purpose-built and easy to use citation based measure. Our measure is given by the ratio between i the relative share of journal self-citations to papers published in the last two years, and ii the relative share of journal self-citations to papers published in preceding years. A ratio higher than one suggests that a journal's impact factor is disproportionally affected (inflated by self-citations. Using recently reported survey data, we show that there is a relation between high values of our proposed measure and coercive journal self-citation malpractices. We use our measure to perform a large-scale analysis of impact factor biased journal self-citations. Our main empirical result is, that the share of journals for which our measure has a (very high value has remained stable between the 1980s and the early 2000s, but has since risen strongly in all fields of science. This time span corresponds well with the growing obsession with the impact factor as a journal evaluation measure over the last decade. Taken together, this suggests a trend of increasingly pervasive journal self-citation malpractices, with all due unwanted consequences such as inflated perceived importance of journals and biased journal rankings.

  11. Scopus and Web-of-Science 2012 compared in terms of aggregated journal-journal citation relations: Global maps and interactive overlays

    NARCIS (Netherlands)

    Leydesdorff, L.; de Moya-Anegón, F.; de Nooy, W.; Noyons, E.

    2014-01-01

    We compare the networks of aggregated journal-journal citation relations as provided by the Journal Citation Reports (JCR) 2012 of the Science and Social Science Citation Indexes (SCI and SSCI) with similar data for 2012 based on Scopus. First, we develop basemaps and overlays for the two sets

  12. Differences and similarities in double special educational needs: high abilities/giftedness x Asperger’s Syndrome

    Directory of Open Access Journals (Sweden)

    Nara Joyce Wellausen Vieira

    2012-08-01

    Full Text Available The study was developed from a literature search in books, articles and theses that have been published since the year 2000 on the theme High Abilities / Giftedness and Asperger’s Syndrome. The objectives of this research were to conduct a search on publications from 2000 to 2011, about the common and different features to the person with Asperger syndrome and high ability gifted, and also relate the number of publications found in Education and Special Education. At theoretical we present the conception of High Abilities / Giftedness of Renzulli (2004 and Gardner (2000 and in the conception of Asperger Syndrome, Mello (2007 and Klin (2006. When analyzing the data, were perceived similarities and differences between the behavioral characteristics of individuals with High Abilities / Giftedness and those with Asperger’s Syndrome. It’s possible point out that there is much evidence that separate these two special educational needs and few similarities between them. But do not neglect that there may be a dual disability between these two particular special educational needs, because there are still few studies that verify theoretically the differences and similarities of these subjects, much less those that investigate these similarities and distinctions in the subjects themselves.

  13. Prestige versus citation volume as journal indices in cognitive neuroscience.

    Science.gov (United States)

    Ward, Jamie

    2014-01-01

    In recent years, alternative measures of a journal's influence have been developed to those based on citation metrics (such as Impact Factor). This includes the Scimago Journal Rank (SJR) which is adapted from algorithms used to prioritize webpages in search engines. It is considered a measure of "prestige" insofar as it takes into account the importance of links/citations and not just their total number. Taking a sample of 38 journals from within the field of cognitive neuroscience, it is shown that SJR and Impact Factor correlate highly (r = .83) but with a few large discrepancies in rankings. This journal, Cognitive Neuroscience, fares better on the prestige-based measure than might otherwise be expected from its citation-based rank.

  14. Geographic bias in citation rates of conservation research.

    Science.gov (United States)

    Meijaard, Erik; Cardillo, Marcel; Meijaard, Emily M; Possingham, Hugh P

    2015-06-01

    We investigated whether the impact of conservation science is greater for research conducted in countries with more pressing conservation problems. We quantified research impact for 231 countries based on 2 citation metrics (mean cites per paper and h index) and fitted models predicting research impact based on number of threatened bird and mammal species (as a measure of conservation importance of a country) and a range of demographic variables. Citation rates of conservation research increased as a country's conservation need increased and as human population, quality of governance, and wealth increased. Even after accounting for these factors, citation rates among regions and countries within regions varied significantly. The conservation research community needs to consider ways to begin addressing the entrenched disadvantages some countries have when it comes to initiating projects and producing high-quality research. © 2015 Society for Conservation Biology.

  15. Do citation systems represent theories of truth?

    Directory of Open Access Journals (Sweden)

    Betsy Van der Veer Martens

    2001-01-01

    Full Text Available This article suggests that the citation can be viewed not only as a "concept symbol" but also as a "boundary object". The scientific, legal, and patent citation systems in America are examined at the micro, meso, and macro levels in order to understand how they function as commodified theories of truth in contemporary knowledge representation. This approach also offers a meta-theoretical overview of existing citation research efforts in science, law, and technology that may be of interdisciplinary interest.

  16. Similarity Mapplet: Interactive Visualization of the Directory of Useful Decoys and ChEMBL in High Dimensional Chemical Spaces.

    Science.gov (United States)

    Awale, Mahendra; Reymond, Jean-Louis

    2015-08-24

    An Internet portal accessible at www.gdb.unibe.ch has been set up to automatically generate color-coded similarity maps of the ChEMBL database in relation to up to two sets of active compounds taken from the enhanced Directory of Useful Decoys (eDUD), a random set of molecules, or up to two sets of user-defined reference molecules. These maps visualize the relationships between the selected compounds and ChEMBL in six different high dimensional chemical spaces, namely MQN (42-D molecular quantum numbers), SMIfp (34-D SMILES fingerprint), APfp (20-D shape fingerprint), Xfp (55-D pharmacophore fingerprint), Sfp (1024-bit substructure fingerprint), and ECfp4 (1024-bit extended connectivity fingerprint). The maps are supplied in form of Java based desktop applications called "similarity mapplets" allowing interactive content browsing and linked to a "Multifingerprint Browser for ChEMBL" (also accessible directly at www.gdb.unibe.ch ) to perform nearest neighbor searches. One can obtain six similarity mapplets of ChEMBL relative to random reference compounds, 606 similarity mapplets relative to single eDUD active sets, 30,300 similarity mapplets relative to pairs of eDUD active sets, and any number of similarity mapplets relative to user-defined reference sets to help visualize the structural diversity of compound series in drug optimization projects and their relationship to other known bioactive compounds.

  17. Transcriptome-Based Identification of Highly Similar Odorant-Binding Proteins among Neotropical Stink Bugs and Their Egg Parasitoid.

    Directory of Open Access Journals (Sweden)

    Luciana R Farias

    Full Text Available Olfaction plays a fundamental role in insect survival through resource location and intra and interspecific communications. We used RNA-Seq to analyze transcriptomes for odorant-binding proteins (OBPs from major stink bug pest species in Brazil, Euschistus heros, Chinavia ubica, and Dichelops melacanthus, and from their egg parasitoid, Telenomus podisi. We identified 23 OBPs in E. heros, 25 OBPs in C. ubica, 9 OBPs in D. melacanthus, and 7 OBPs in T. podisi. The deduced amino acid sequences of the full-length OBPs had low intraspecific similarity, but very high similarity between two pairs of OBPs from E. heros and C. ubica (76.4 and 84.0% and between two pairs of OBPs from the parasitoid and its preferred host E. heros (82.4 and 88.5%, confirmed by a high similarity of their predicted tertiary structures. The similar pairs of OBPs from E. heros and C. ubica may suggest that they have derived from a common ancestor, and retain the same biological function to bind a ligand perceived or produced in both species. The T. podisi OBPs similar to E. heros were not orthologous to any known hymenopteran OBPs, and may have evolved independently and converged to the host OBPs, providing a possible basis for the host location of T. podisi using E. heros semiochemical cues.

  18. Transcriptome-Based Identification of Highly Similar Odorant-Binding Proteins among Neotropical Stink Bugs and Their Egg Parasitoid

    Science.gov (United States)

    Farias, Luciana R.; Schimmelpfeng, Pedro H. C.; Togawa, Roberto C.; Costa, Marcos M. C.; Grynberg, Priscila; Martins, Natália F.; Borges, Miguel; Blassioli-Moraes, Maria Carolina; Laumann, Raul A.; Báo, Sônia N.; Paula, Débora P.

    2015-01-01

    Olfaction plays a fundamental role in insect survival through resource location and intra and interspecific communications. We used RNA-Seq to analyze transcriptomes for odorant-binding proteins (OBPs) from major stink bug pest species in Brazil, Euschistus heros, Chinavia ubica, and Dichelops melacanthus, and from their egg parasitoid, Telenomus podisi. We identified 23 OBPs in E. heros, 25 OBPs in C. ubica, 9 OBPs in D. melacanthus, and 7 OBPs in T. podisi. The deduced amino acid sequences of the full-length OBPs had low intraspecific similarity, but very high similarity between two pairs of OBPs from E. heros and C. ubica (76.4 and 84.0%) and between two pairs of OBPs from the parasitoid and its preferred host E. heros (82.4 and 88.5%), confirmed by a high similarity of their predicted tertiary structures. The similar pairs of OBPs from E. heros and C. ubica may suggest that they have derived from a common ancestor, and retain the same biological function to bind a ligand perceived or produced in both species. The T. podisi OBPs similar to E. heros were not orthologous to any known hymenopteran OBPs, and may have evolved independently and converged to the host OBPs, providing a possible basis for the host location of T. podisi using E. heros semiochemical cues. PMID:26161752

  19. Update on research software citation efforts

    Science.gov (United States)

    Allen, Alice

    2017-01-01

    Research software citation has received a lot of attention the past few years, as evidenced by numerous efforts that have discussed it, including WSSSPE, Force11 Software Citation Working Group, the Center for Open Science's Transparency and Openness Promotion (TOP) Guidelines, a workshop on Engineering Academic Software, and the CodeMeta project. This presentation briefly covers recent broad efforts to improve research transparency across disciplines through software availability and citation, and the Software Citation Principles that have recently been published as a result of the work done through Force11.

  20. Implementation of Data Citations and Persistent Identifiers at the ORNL DAAC

    Science.gov (United States)

    Cook, R. B.; Santhana Vannan, S.; Devarakonda, Ranjeet; McMurry, B. F.; Kidder, J. H.; Shanafield, H. A.; Palanisamy, G.

    2013-12-01

    As research in Earth Science becomes more data intensive, a critical requirement of data archives is that data needs to be easily discovered, accessed, and used. One approach to improving data discovery and access is through data citations coupled with Digital Object Identifiers (DOI). Beginning in 1998, the Oak Ridge National Laboratory Distributed Active Archive Center (ORNL DAAC) has issued data product citations that have been accepted and used in AGU and other peer-reviewed journals. Citation elements established by the ORNL DAAC are similar to those used for journal articles (authors, titles, information to locate, and version), and beginning in 2007 included a DOI that is persistent, actionable, specific, and complete. The citation approach used at the DAAC also allows for referring to specific subsets of the data, by including within the citation the temporal and spatial portions of the data actually used. Citations allow others to find data and reproduce the results of the research article, and also use those data to test new hypotheses, design new sample collections, or construct or evaluate models. In addition to enhancing discovery and access of the data used in a research article, the citation gives credit to data generators, data centers and their funders, and, through citation indices, determine the scientific impact of a data set. The ORNL DAAC has developed a database that links research articles and their use of ORNL DAAC data products. The database allows determination of who, in which journal, and how the data have been used, in a manner analogous to author citation indices. The ORNL DAAC has been an initial contributor to the Thomson Reuters Data Citation Index. In addition, research data products deposited at the ORNL DAAC are linked using DOIs to relevant articles in Elsevier journals available on ScienceDirect. The ultimate goal of this implementation is that citations to data products become a routine part of the scientific process.

  1. The measurement of the effect on citation inequality of differences in citation practices across scientific fields

    National Research Council Canada - National Science Library

    Crespo, Juan A; Li, Yunrong; Li, Yungrong; Ruiz-Castillo, Javier

    2013-01-01

    This paper has two aims: (i) to introduce a novel method for measuring which part of overall citation inequality can be attributed to differences in citation practices across scientific fields, and (ii...

  2. [Analysis of articles and citations of Chinese Journal of Pediatrics from 1950 to 2009].

    Science.gov (United States)

    Leng, Jing; Hu, Yan-Ping; Li, Lin-Ping

    2011-01-01

    To explore the articles, authors and citations of the articles published in Chinese Journal of Pediatrics, and have a clear view of the characteristics of this journal in its different development stages. Bibliometric methods were used to analyze the published articles, cooperation, regional distribution, core authors, corresponding authors and high-quantities of publication institutes, and also to calculate the number of citations per paper, types of citations, language-based citation number, Price index, self-cited rate and the distribution of journals based on citations. Totally 5534 academic articles were published during the 60 years, of which the number of articles written by more than one author was 4669 (80.71%), with a degree of collaboration as 3.87, and a rate of collaboration as 84.37%. The number of articles by a single author was 865 (19.29%). As for the regions from where the papers were submitted, the top one was Beijing, which had 1495 articles published (27.01%). The top 15 institutes in number of articles had published 2254 articles (40.73%). The average citation rate was 84.15%, and the number of citations was 48 854. The number of citations per paper was 10.06, the Price index and self-cited rate were 55.57% and 6.12%, respectively. The number of citations from foreign language literature was 35 781 (69.1%). The citation number of journals was 43 266 (84.5%), which is markedly higher than the citations of books and others. Chinese Journal of Pediatrics has a wide distribution of authors and a high cooperative rate. This journal has a group of high-level core authors since founded in 1950, and it shows an adequate ability of absorbing and using scientific information. The articles published in this journal not only objectively reflected the distribution of the research powers, but also the development status of pediatrics in our country.

  3. Mokranjac in the works of his successors - from the citation imitation to the citation polemics

    Directory of Open Access Journals (Sweden)

    Božidarević Saša

    2017-01-01

    Full Text Available Using the interdisciplinary approach to Stevan Mokranjac’s Garlands [Rukoveti] and his successors in the Serbian choral music after World War II, while simultaneously relying on Dubravka Oraić Tolić’s Theory of Citation (1990, I have continued the work of distinguished scholars in the field of Serbian postwar music and their diverse analytical experiences. Whilst critically evaluating the existing analytical interpretations, in this article I have pointed to the alternative solutions and interpretations of the relevant issues of the organisation of the musical flow of Garlands and related formal types in almost all relevant musicotextual segments. Departing from the problems posed by the phenomena of intertextuality and citational procedures as elaborated by Dubravka Oraić Tolić, in this article I focus on their different embodiments as established in the relation between Stevan Mokranjac’s Garlands and garlands and similar forms of the second half of the 20th century; I also specify analytical methods and their creative application on the analysis of individual choral works. During this process, certain different types of the intertexual communication in the garlands written by members of different generations required more precise definition, i.e. additions and redefining of the existing terminology of the theory of citations, and an introduction of new terms. The selected analysed sample incorporates both the works that nowadays constitute the basis of the choral concert repertoire, and the works which are nowadays mostly neglected and not so attractive to performers and music theorists.Analytical issues discussed in this study have repeatedly pointed to the importance of Stevan Mokranjac’s Garlands as a paradigm for the authors of the second half of the 20th century, and repeated the vitality of his creative contributions to Serbian music. This has, in turn, reinforced the common knowledge on the work of Mokranjac as the

  4. Citation networks of related trials are often disconnected: implications for bidirectional citation searches.

    Science.gov (United States)

    Robinson, Karen A; Dunn, Adam G; Tsafnat, Guy; Glasziou, Paul

    2014-07-01

    Reports of randomized controlled trials (RCTs) should set findings within the context of previous research. The resulting network of citations would also provide an alternative search method for clinicians, researchers, and systematic reviewers seeking to base decisions on all available evidence. We sought to determine the connectedness of citation networks of RCTs by examining direct (referenced trials) and indirect (through references of referenced trials, etc) citation of trials to one another. Meta-analyses were used to create citation networks of RCTs addressing the same clinical questions. The primary measure was the proportion of networks where following citation links between RCTs identifies the complete set of RCTs, forming a single connected citation group. Other measures included the number of disconnected groups (islands) within each network, the number of citations in the network relative to the maximum possible, and the maximum number of links in the path between two connected trials (a measure of indirectness of citations). We included 259 meta-analyses with a total of 2,413 and a median of seven RCTs each. For 46% (118 of 259) of networks, the RCTs formed a single connected citation group-one island. For the other 54% of networks, where at least one RCT group was not cited by others, 39% had two citation islands and 4% (10 of 257) had 10 or more islands. On average, the citation networks had 38% of the possible citations to other trials (if each trial had cited all earlier trials). The number of citation islands and the maximum number of citation links increased with increasing numbers of trials in the network. Available evidence to answer a clinical question may be identified by using network citations created with a small initial corpus of eligible trials. However, the number of islands means that citation networks cannot be relied on for evidence retrieval. Copyright © 2014 Elsevier Inc. All rights reserved.

  5. Towards self-similar propagation in a dispersion tailored and highly nonlinear segmented bandgap fiber at 2.8 micron

    CERN Document Server

    Biswas, Piyali; Biswas, Abhijit; Pal, Bishnu P

    2016-01-01

    We numerically demonstrate self-similar propagation of parabolic optical pulses through a highly nonlinear and passive specialty photonic bandgap fiber at 2.8 micron. In this context, we have proposed a scheme endowed with a rapidly varying, but of nearly-mean-zero longitudinal dispersion and modulated nonlinear profile in order to achieve self-similarity of the formed parabolic pulse propagating over longer distances. To implement the proposed scheme, we have designed a segmented bandgap fiber with suitably tapered counterparts to realize such customized dispersion with chalchogenide glass materials. A self-similar parabolic pulse with full-width-at-half-maxima of 4.12 ps and energy of ~ 39 pJ as been achieved at the output. Along with a linear chirp spanning over the entire pulse duration, 3dB spectral broadening of about 38 nm at the output has been reported.

  6. Citation bias favoring positive clinical trials of thrombolytics for acute ischemic stroke: a cross-sectional analysis.

    Science.gov (United States)

    Misemer, Benjamin S; Platts-Mills, Timothy F; Jones, Christopher W

    2016-09-28

    Citation bias occurs when positive trials involving a medical intervention receive more citations than neutral or negative trials of similar quality. Several large clinical trials have studied the use of thrombolytic agents for the treatment of acute ischemic stroke with differing results, thereby presenting an opportunity to assess these trials for evidence of citation bias. We compared citation rates among positive, neutral, and negative trials of alteplase (tPA) and other thrombolytic agents for stroke. We used a 2014 Cochrane Review of thrombolytic therapy for the treatment of acute stroke to identify non-pilot, English-language stroke trials published in MEDLINE-indexed journals comparing thrombolytic therapy with control. We classified trials as positive if there was a statistically significant primary outcome difference favoring the intervention, neutral if there was no difference in primary outcome, or negative for a significant primary outcome difference favoring the control group. Trials were also considered negative if safety concerns supported stopping the trial early. Using Scopus, we collected citation counts through 2015 and compared citation rates according to trial outcomes. Eight tPA trials met inclusion criteria: two were positive, four were neutral, and two were negative. The two positive trials received 9080 total citations, the four neutral trials received 4847 citations, and the two negative trials received 1096 citations. The mean annual per-trial citation rates were 333 citations per year for positive trials, 96 citations per year for neutral trials, and 35 citations per year for negative trials. Trials involving other thrombolytic agents were not cited as often, though as with tPA, positive trials were cited more frequently than neutral or negative trials. Positive trials of tPA for ischemic stroke are cited approximately three times as often as neutral trials, and nearly 10 times as often as negative trials, indicating the presence of

  7. Mining a Web Citation Database for Author Co-Citation Analysis.

    Science.gov (United States)

    He, Yulan; Hui, Siu Cheung

    2002-01-01

    Proposes a mining process to automate author co-citation analysis based on the Web Citation Database, a data warehouse for storing citation indices of Web publications. Describes the use of agglomerative hierarchical clustering for author clustering and multidimensional scaling for displaying author cluster maps, and explains PubSearch, a…

  8. Identification of long-term concept-symbols among citations: Do common intellectual histories structure citation behavior?

    NARCIS (Netherlands)

    Comins, J.A.; Leydesdorff, L.

    Citation classics” are not only highly cited, but also cited during several decades. We explore whether the peaks in the spectrograms generated by Reference Publication Years Spectroscopy (RPYS) indicate such long-term impact by comparing across RPYS for subsequent time intervals. Multi-RPYS

  9. Biomechanics Scholar Citations across Academic Ranks

    Directory of Open Access Journals (Sweden)

    Knudson Duane

    2015-11-01

    Full Text Available Study aim: citations to the publications of a scholar have been used as a measure of the quality or influence of their research record. A world-wide descriptive study of the citations to the publications of biomechanics scholars of various academic ranks was conducted.

  10. 41 CFR 128-1.152 - Citation.

    Science.gov (United States)

    2010-07-01

    ... 41 Public Contracts and Property Management 3 2010-07-01 2010-07-01 false Citation. 128-1.152 Section 128-1.152 Public Contracts and Property Management Federal Property Management Regulations System (Continued) DEPARTMENT OF JUSTICE 1-INTRODUCTION 1.1-Regulation System § 128-1.152 Citation. The JPMR will be...

  11. 1 CFR 22.2 - Authority citation.

    Science.gov (United States)

    2010-01-01

    ... 1 General Provisions 1 2010-01-01 2010-01-01 false Authority citation. 22.2 Section 22.2 General Provisions ADMINISTRATIVE COMMITTEE OF THE FEDERAL REGISTER PREPARATION, TRANSMITTAL, AND PROCESSING OF DOCUMENTS PREPARATION OF NOTICES AND PROPOSED RULES Notices § 22.2 Authority citation. The authority under...

  12. Citation graph based ranking in Invenio

    CERN Document Server

    Marian, Ludmila; Rajman, Martin; Vesely, Martin

    2010-01-01

    Invenio is the web-based integrated digital library system developed at CERN. Within this framework, we present four types of ranking models based on the citation graph that complement the simple approach based on citation counts: time-dependent citation counts, a relevancy ranking which extends the PageRank model, a time-dependent ranking which combines the freshness of citations with PageRank and a ranking that takes into consideration the external citations. We present our analysis and results obtained on two main data sets: Inspire and CERN Document Server. Our main contributions are: (i) a study of the currently available ranking methods based on the citation graph; (ii) the development of new ranking methods that correct some of the identified limitations of the current methods such as treating all citations of equal importance, not taking time into account or considering the citation graph complete; (iii) a detailed study of the key parameters for these ranking methods. (The original publication is ava...

  13. Academic Citation Practice: A Sinking Sheep?

    Science.gov (United States)

    Rekdal, Ole Bjørn

    2014-01-01

    An explosion in access to electronic databases and digital information is changing the way we view source citation. While the original purpose of referencing--showing the reader exactly where the author got his or her input--is clearly more important than ever, citation is increasingly taking on other roles, ones that have little to do with good…

  14. Citation Analysis of Iranian Journal of Basic Medical Sciences in ISI Web of Knowledge, Scopus, and Google Scholar.

    Science.gov (United States)

    Zarifmahmoudi, Leili; Kianifar, Hamid Reza; Sadeghi, Ramin

    2013-10-01

    Citation tracking is an important method to analyze the scientific impact of journal articles and can be done through Scopus (SC), Google Scholar (GS), or ISI web of knowledge (WOS). In the current study, we analyzed the citations to 2011-2012 articles of Iranian Journal of Basic Medical Sciences (IJBMS) in these three resources. The relevant data from SC, GS, and WOS official websites. Total number of citations, their overlap and unique citations of these three recourses were evaluated. WOS and SC covered 100% and GS covered 97% of the IJBMS items. Totally, 37 articles were cited at least once in one of the studied resources. Total number of citations were 20, 30, and 59 in WOS, SC, and GS respectively. Forty citations of GS, 6 citation of SC, and 2 citations of WOS were unique. Every scientific resource has its own inaccuracies in providing citation analysis information. Citation analysis studies are better to be done each year to correct any inaccuracy as soon as possible. IJBMS has gained considerable scientific attention from wide range of high impact journals and through citation tracking method; this visibility can be traced more thoroughly.

  15. Classic articles in Psychology in the Science Citation Index Expanded: A bibliometric analysis.

    Science.gov (United States)

    Ho, Yuh-Shan; Hartley, James

    2016-11-01

    Who today are the most highly cited psychologists listed in the Web of Science? This paper reports answers to this question by using the Science Citation Index Expanded to find out. This index covers over 280,350 documents in the Psychology category of the Web of Science from 1900 to 2013 and lists the most highly cited papers published between 1927 and 2012. For example, in 2013, an article published by Jacob Cohen in 1992 obtained (1) the highest ranking with 1,068 citations, (2) the highest for total citations per year, and (3) was ranked 3rd for the total number of citations since publication by 2013. New technology thus provides a seismic shift in the ways that we can obtain and analyse data like these. Indeed, the results for the top 10 articles indicate that practical and methodological papers now receive more citations than the more theoretical papers usually found in earlier surveys. © 2015 The British Psychological Society.

  16. Gender and citation impact in management research

    DEFF Research Database (Denmark)

    Nielsen, Mathias Wullum

    2017-01-01

    This study investigates the extent to which a gender gap exists in the citation rates of management researchers. Based on a cross-sectional sample of 26,783 publications and 65,436 authorships, we illuminate possible differences in women’s and men’s average citation impact per paper, adjusting...... for covariation attributable to geographical setting, institutional reputation, self-citations, collaborative patterns and journal prestige. We find a marginal difference in citation impact in favor of women management scholars. Women are also slightly more likely than men to author articles among the top-10......% most cited in their field. Yet given the sensitivity of our results to uncertainties in the data, these variations should not be overgeneralized. In the large picture, differences in citation rates appear to be a negligible factor in the reproduction of gender inequalities in management research....

  17. Bibliometrics and citation analysis from the science citation index to cybermetrics

    CERN Document Server

    De Bellis, Nicola

    2009-01-01

    Bibliometrics and Citation Analysis: From the Science Citation Index to Cybermetrics offers a comprehensive overview of theories, techniques, concepts, and applications in the interdisciplinary and steadily growing field of bibliometrics. This book looks at bibliographic citation and citation networks by discussing the past, present, and future of bibliometrics, from its foundations in the Science Citation Index to its expansion into the World Wide Web. It is useful to those in every area of scholarship involved in the quantitative analysis of information exchanges, but also to general readers

  18. A SNP based high-density linkage map of Apis cerana reveals a high recombination rate similar to Apis mellifera.

    Science.gov (United States)

    Shi, Yuan Yuan; Sun, Liang Xian; Huang, Zachary Y; Wu, Xiao Bo; Zhu, Yong Qiang; Zheng, Hua Jun; Zeng, Zhi Jiang

    2013-01-01

    The Eastern honey bee, Apis cerana Fabricius, is distributed in southern and eastern Asia, from India and China to Korea and Japan and southeast to the Moluccas. This species is also widely kept for honey production besides Apis mellifera. Apis cerana is also a model organism for studying social behavior, caste determination, mating biology, sexual selection, and host-parasite interactions. Few resources are available for molecular research in this species, and a linkage map was never constructed. A linkage map is a prerequisite for quantitative trait loci mapping and for analyzing genome structure. We used the Chinese honey bee, Apis cerana cerana to construct the first linkage map in the Eastern honey bee. F2 workers (N = 103) were genotyped for 126,990 single nucleotide polymorphisms (SNPs). After filtering low quality and those not passing the Mendel test, we obtained 3,000 SNPs, 1,535 of these were informative and used to construct a linkage map. The preliminary map contains 19 linkage groups, we then mapped the 19 linkage groups to 16 chromosomes by comparing the markers to the genome of A. mellfiera. The final map contains 16 linkage groups with a total of 1,535 markers. The total genetic distance is 3,942.7 centimorgans (cM) with the largest linkage group (180 loci) measuring 574.5 cM. Average marker interval for all markers across the 16 linkage groups is 2.6 cM. We constructed a high density linkage map for A. c. cerana with 1,535 markers. Because the map is based on SNP markers, it will enable easier and faster genotyping assays than randomly amplified polymorphic DNA or microsatellite based maps used in A. mellifera.

  19. A SNP based high-density linkage map of Apis cerana reveals a high recombination rate similar to Apis mellifera.

    Directory of Open Access Journals (Sweden)

    Yuan Yuan Shi

    Full Text Available BACKGROUND: The Eastern honey bee, Apis cerana Fabricius, is distributed in southern and eastern Asia, from India and China to Korea and Japan and southeast to the Moluccas. This species is also widely kept for honey production besides Apis mellifera. Apis cerana is also a model organism for studying social behavior, caste determination, mating biology, sexual selection, and host-parasite interactions. Few resources are available for molecular research in this species, and a linkage map was never constructed. A linkage map is a prerequisite for quantitative trait loci mapping and for analyzing genome structure. We used the Chinese honey bee, Apis cerana cerana to construct the first linkage map in the Eastern honey bee. RESULTS: F2 workers (N = 103 were genotyped for 126,990 single nucleotide polymorphisms (SNPs. After filtering low quality and those not passing the Mendel test, we obtained 3,000 SNPs, 1,535 of these were informative and used to construct a linkage map. The preliminary map contains 19 linkage groups, we then mapped the 19 linkage groups to 16 chromosomes by comparing the markers to the genome of A. mellfiera. The final map contains 16 linkage groups with a total of 1,535 markers. The total genetic distance is 3,942.7 centimorgans (cM with the largest linkage group (180 loci measuring 574.5 cM. Average marker interval for all markers across the 16 linkage groups is 2.6 cM. CONCLUSION: We constructed a high density linkage map for A. c. cerana with 1,535 markers. Because the map is based on SNP markers, it will enable easier and faster genotyping assays than randomly amplified polymorphic DNA or microsatellite based maps used in A. mellifera.

  20. High-functioning autism patients share similar but more severe impairments in verbal theory of mind than schizophrenia patients.

    Science.gov (United States)

    Tin, L N W; Lui, S S Y; Ho, K K Y; Hung, K S Y; Wang, Y; Yeung, H K H; Wong, T Y; Lam, S M; Chan, R C K; Cheung, E F C

    2017-09-18

    Evidence suggests that autism and schizophrenia share similarities in genetic, neuropsychological and behavioural aspects. Although both disorders are associated with theory of mind (ToM) impairments, a few studies have directly compared ToM between autism patients and schizophrenia patients. This study aimed to investigate to what extent high-functioning autism patients and schizophrenia patients share and differ in ToM performance. Thirty high-functioning autism patients, 30 schizophrenia patients and 30 healthy individuals were recruited. Participants were matched in age, gender and estimated intelligence quotient. The verbal-based Faux Pas Task and the visual-based Yoni Task were utilised to examine first- and higher-order, affective and cognitive ToM. The task/item difficulty of two paradigms was examined using mixed model analyses of variance (ANOVAs). Multiple ANOVAs and mixed model ANOVAs were used to examine group differences in ToM. The Faux Pas Task was more difficult than the Yoni Task. High-functioning autism patients showed more severely impaired verbal-based ToM in the Faux Pas Task, but shared similar visual-based ToM impairments in the Yoni Task with schizophrenia patients. The findings that individuals with high-functioning autism shared similar but more severe impairments in verbal ToM than individuals with schizophrenia support the autism-schizophrenia continuum. The finding that verbal-based but not visual-based ToM was more impaired in high-functioning autism patients than schizophrenia patients could be attributable to the varied task/item difficulty between the two paradigms.

  1. A reverse engineering approach to the suppression of citation biases reveals universal properties of citation distributions.

    Science.gov (United States)

    Radicchi, Filippo; Castellano, Claudio

    2012-01-01

    The large amount of information contained in bibliographic databases has recently boosted the use of citations, and other indicators based on citation numbers, as tools for the quantitative assessment of scientific research. Citations counts are often interpreted as proxies for the scientific influence of papers, journals, scholars, and institutions. However, a rigorous and scientifically grounded methodology for a correct use of citation counts is still missing. In particular, cross-disciplinary comparisons in terms of raw citation counts systematically favors scientific disciplines with higher citation and publication rates. Here we perform an exhaustive study of the citation patterns of millions of papers, and derive a simple transformation of citation counts able to suppress the disproportionate citation counts among scientific domains. We find that the transformation is well described by a power-law function, and that the parameter values of the transformation are typical features of each scientific discipline. Universal properties of citation patterns descend therefore from the fact that citation distributions for papers in a specific field are all part of the same family of univariate distributions.

  2. How citation distortions create unfounded authority: analysis of a citation network.

    Science.gov (United States)

    Greenberg, Steven A

    2009-07-20

    To understand belief in a specific scientific claim by studying the pattern of citations among papers stating it. A complete citation network was constructed from all PubMed indexed English literature papers addressing the belief that beta amyloid, a protein accumulated in the brain in Alzheimer's disease, is produced by and injures skeletal muscle of patients with inclusion body myositis. Social network theory and graph theory were used to analyse this network. Citation bias, amplification, and invention, and their effects on determining authority. The network contained 242 papers and 675 citations addressing the belief, with 220,553 citation paths supporting it. Unfounded authority was established by citation bias against papers that refuted or weakened the belief; amplification, the marked expansion of the belief system by papers presenting no data addressing it; and forms of invention such as the conversion of hypothesis into fact through citation alone. Extension of this network into text within grants funded by the National Institutes of Health and obtained through the Freedom of Information Act showed the same phenomena present and sometimes used to justify requests for funding. Citation is both an impartial scholarly method and a powerful form of social communication. Through distortions in its social use that include bias, amplification, and invention, citation can be used to generate information cascades resulting in unfounded authority of claims. Construction and analysis of a claim specific citation network may clarify the nature of a published belief system and expose distorted methods of social citation.

  3. Software and the Scientist: Coding and Citation Practices in Geodynamics

    Science.gov (United States)

    Hwang, Lorraine; Fish, Allison; Soito, Laura; Smith, MacKenzie; Kellogg, Louise H.

    2017-11-01

    In geodynamics as in other scientific areas, computation has become a core component of research, complementing field observation, laboratory analysis, experiment, and theory. Computational tools for data analysis, mapping, visualization, modeling, and simulation are essential for all aspects of the scientific workflow. Specialized scientific software is often developed by geodynamicists for their own use, and this effort represents a distinctive intellectual contribution. Drawing on a geodynamics community that focuses on developing and disseminating scientific software, we assess the current practices of software development and attribution, as well as attitudes about the need and best practices for software citation. We analyzed publications by participants in the Computational Infrastructure for Geodynamics and conducted mixed method surveys of the solid earth geophysics community. From this we learned that coding skills are typically learned informally. Participants considered good code as trusted, reusable, readable, and not overly complex and considered a good coder as one that participates in the community in an open and reasonable manor contributing to both long- and short-term community projects. Participants strongly supported citing software reflected by the high rate a software package was named in the literature and the high rate of citations in the references. However, lacking are clear instructions from developers on how to cite and education of users on what to cite. In addition, citations did not always lead to discoverability of the resource. A unique identifier to the software package itself, community education, and citation tools would contribute to better attribution practices.

  4. Power laws in citation distributions: evidence from Scopus.

    Science.gov (United States)

    Brzezinski, Michal

    Modeling distributions of citations to scientific papers is crucial for understanding how science develops. However, there is a considerable empirical controversy on which statistical model fits the citation distributions best. This paper is concerned with rigorous empirical detection of power-law behaviour in the distribution of citations received by the most highly cited scientific papers. We have used a large, novel data set on citations to scientific papers published between 1998 and 2002 drawn from Scopus. The power-law model is compared with a number of alternative models using a likelihood ratio test. We have found that the power-law hypothesis is rejected for around half of the Scopus fields of science. For these fields of science, the Yule, power-law with exponential cut-off and log-normal distributions seem to fit the data better than the pure power-law model. On the other hand, when the power-law hypothesis is not rejected, it is usually empirically indistinguishable from most of the alternative models. The pure power-law model seems to be the best model only for the most highly cited papers in "Physics and Astronomy". Overall, our results seem to support theories implying that the most highly cited scientific papers follow the Yule, power-law with exponential cut-off or log-normal distribution. Our findings suggest also that power laws in citation distributions, when present, account only for a very small fraction of the published papers (less than 1 % for most of science fields) and that the power-law scaling parameter (exponent) is substantially higher (from around 3.2 to around 4.7) than found in the older literature.

  5. Open Access Meets Discoverability: Citations to Articles Posted to Academia.edu.

    Directory of Open Access Journals (Sweden)

    Yuri Niyazov

    Full Text Available Using matching and regression analyses, we measure the difference in citations between articles posted to Academia.edu and other articles from similar journals, controlling for field, impact factor, and other variables. Based on a sample size of 31,216 papers, we find that a paper in a median impact factor journal uploaded to Academia.edu receives 16% more citations after one year than a similar article not available online, 51% more citations after three years, and 69% after five years. We also found that articles also posted to Academia.edu had 58% more citations than articles only posted to other online venues, such as personal and departmental home pages, after five years.

  6. Homogeneous generation of iDA neurons with high similarity to bona fide DA neurons using a drug inducible system.

    Science.gov (United States)

    Park, Hanseul; Kim, Hongwon; Yoo, Junsang; Lee, Jaekwang; Choi, Hwan; Baek, Soonbong; Lee, C Justin; Kim, Janghwan; Lengner, Christopher J; Sung, Jung-Suk; Kim, Jongpil

    2015-12-01

    Recent work generating induced dopaminergic (iDA) neurons using direct lineage reprogramming potentially provides a novel platform for the study and treatment Parkinson's disease (PD). However, one of the most important issues for iDA-based applications is the degree to which iDA neurons resemble the molecular and functional properties of their endogenous DA neuron counterparts. Here we report that the homogeneity of the reprogramming gene expression system is critical for the generation of iDA neuron cultures that are highly similar to endogenous DA neurons. We employed an inducible system that carries iDA-inducing factors as defined transgenes for direct lineage reprogramming to iDA neurons. This system circumvents the need for viral transduction, enabling a more efficient and reproducible reprogramming process for the generation of genetically homogenous iDA neurons. We showed that this inducible system generates iDA neurons with high similarity to their bona fide in vivo counterparts in comparison to direct infection methods. Thus, our results suggest that homogenous expression of exogenous genes in direct lineage reprogramming is critical for the generation of high quality iDA neuron cultures, making such culture systems a valuable resource for iDA-based drug screening and, ultimately, potential therapeutic intervention in PD. Copyright © 2015 Elsevier Ltd. All rights reserved.

  7. Gait in ducks (Anas platyrhynchos and chickens (Gallus gallus – similarities in adaptation to high growth rate

    Directory of Open Access Journals (Sweden)

    B. M. Duggan

    2016-08-01

    Full Text Available Genetic selection for increased growth rate and muscle mass in broiler chickens has been accompanied by mobility issues and poor gait. There are concerns that the Pekin duck, which is on a similar selection trajectory (for production traits to the broiler chicken, may encounter gait problems in the future. In order to understand how gait has been altered by selection, the walking ability of divergent lines of high- and low-growth chickens and ducks was objectively measured using a pressure platform, which recorded various components of their gait. In both species, lines which had been selected for large breast muscle mass moved at a slower velocity and with a greater step width than their lighter conspecifics. These high-growth lines also spent more time supported by two feet in order to improve balance when compared with their lighter, low-growth conspecifics. We demonstrate that chicken and duck lines which have been subjected to intense selection for high growth rates and meat yields have adapted their gait in similar ways. A greater understanding of which components of gait have been altered in selected lines with impaired walking ability may lead to more effective breeding strategies to improve gait in poultry.

  8. Low- and high-volume strength training induces similar neuromuscular improvements in muscle quality in elderly women.

    Science.gov (United States)

    Radaelli, Regis; Botton, Cíntia E; Wilhelm, Eurico N; Bottaro, Martim; Lacerda, Fabiano; Gaya, Anelise; Moraes, Kelly; Peruzzolo, Amanda; Brown, Lee E; Pinto, Ronei Silveira

    2013-08-01

    The aim of this study was to compare the effects of low- and high-volume strength training on strength, muscle activation and muscle thickness (MT) of the lower- and upper-body, and on muscle quality (MQ) of the lower-body in older women. Twenty apparently healthy elderly women were randomly assigned into two groups: low-volume (LV, n=11) and high-volume (HV, n=9). The LV group performed one-set of each exercise, while the HV group performed three-sets of each exercise, twice weekly for 13 weeks. MQ was measured by echo intensity obtained by ultrasonography (MQEI), strength per unit of muscle mass (MQST), and strength per unit of muscle mass adjusted with an allometric scale (MQAS). Following training, there was a significant increase (p≤0.001) in knee extension 1-RM (31.8±20.5% for LV and 38.3±7.3% for HV) and in elbow flexion 1-RM (25.1±9.5% for LV and 26.6±8.9% for HV) and in isometric maximal strength of the lower-body (p≤0.05) and upper-body (p≤0.001), with no difference between groups. The maximal electromyographic activation for both groups increased significantly (p≤0.05) in the vastus medialis and biceps brachii, with no difference between groups. All MT measurements of the lower- and upper-body increased similarly in both groups (p≤0.001). Similar improvements were also observed in MQEI (p≤0.01), MQST, and MQAS (p≤0.001) for both groups. These results demonstrate that low- and high-volume strength training promote similar increases in neuromuscular adaptations of the lower- and upper-body, and in MQ of the lower-body in elderly women. Copyright © 2013 Elsevier Inc. All rights reserved.

  9. High similarity of U2 snDNA sequence between A and B chromosomes in the grasshopper Abracris flavolineata.

    Science.gov (United States)

    Menezes-de-Carvalho, Nahanna Zimmermann; Palacios-Gimenez, Octavio Manuel; Milani, Diogo; Cabral-de-Mello, Diogo Cavalcanti

    2015-10-01

    B chromosomes are frequently enriched for a wide variety of repetitive DNAs. Among grasshoppers in the species Abracris flavolineata (Ommatolampidinae) the B chromosomes are submetacentric, C-negative and harbor repetitive DNAs such as, U2 snDNA, C 0 t-1 DNA, two Mariner-like elements and some microsatellites. Here, we provide evidence showing the intragenome similarity between the B chromosome and the A complement in A. flavolineata, combining analysis of microdissection and chromosome painting and B chromosome-specific amplification through polymerase chain reaction (PCR) of U2 snDNA. Chromosome painting revealed signals spread through the C-negative regions, including the A and B chromosomes. Moreover, significant clustered signals forming bands were observed in some A chromosomes, and for the B chromosome, significant signals were located on both arms, which could be caused by accumulation of repetitive DNA sequences. The C-positive regions did not reveal any signals. Sequence comparison of U2 snDNA between that obtained from a genome without the B chromosome and that from µB-DNA revealed high similarity with the occurrence of four shared haplotypes, one of them (i.e., Hap1) being highly prevalent and putatively ancestral. The highest divergence from Hap1 was observed for Hap3, which was caused by only six mutational steps. These data support an intraspecific origin of the B chromosome in A. flavolineata that is highly similar with the A complement, and the low U2 snDNA sequence diversity observed in the B chromosome could be related to its recent origin, besides intrachromosomal concerted evolution for U2 snDNA repeats in the B chromosome.

  10. Scientific impact of studies published in temporarily available radiation oncology journals: a citation analysis.

    Science.gov (United States)

    Nieder, Carsten; Geinitz, Hans; Andratschke, Nicolaus H; Grosu, Anca L

    2015-01-01

    The purpose of this study was to review all articles published in two temporarily available radiation oncology journals (Radiation Oncology Investigations, Journal of Radiosurgery) in order to evaluate their scientific impact. From several potential measures of impact and relevance of research, we selected article citation rate because landmark or practice-changing research is likely to be cited frequently. The citation database Scopus was used to analyse number of citations. During the time period 1996-1999 the journal Radiation Oncology Investigations published 205 articles, which achieved a median number of 6 citations (range 0-116). However, the most frequently cited article in the first 4 volumes achieved only 23 citations. The Journal of Radiosurgery published only 31 articles, all in the year 1999, which achieved a median number of 1 citation (range 0-11). No prospective randomized studies or phase I-II collaborative group trials were published in these journals. Apparently, the Journal of Radiosurgery acquired relatively few manuscripts that were interesting and important enough to impact clinical practice. Radiation Oncology Investigations' citation pattern was better and closer related to that reported in several previous studies focusing on the field of radiation oncology. The vast majority of articles published in temporarily available radiation oncology journals had limited clinical impact and achieved few citations. Highly influential research was unlikely to be submitted during the initial phase of establishing new radiation oncology journals.

  11. [Citation analysis of papers from Chinese Journal of Gastrointestinal Surgery].

    Science.gov (United States)

    Zhang, Ling; Guo, Hong-bo; Li, Shan; Li, Yan-ping

    2013-01-01

    To analyze and evaluate the quality and academic level of the Chinese Journal of gastrointestinal surgery. Based on the data from WanFang data, a statistical research was carried out with the methods of bibliometrics and citation analysis to investigate the Details of the papers from Chinese Journal of gastrointestinal surgery cited by other journal articles.The important analysis indexes included number of published papers, number of cited papers, citation frequency, citation time distribution and difference, authors and citation journal distribution, etc. Of all the 1442 papers published by the Chinese Journal of gastrointestinal surgery. From 2007 to 2011, 392 papers are cited, which account for about 27.18% of all cited numbers with total cited 998 times .. Immediacy index from 2009-2011 were respectively 0.08, 0.04 and 0.08. Cited half-life was 0.08 in 2011. A relatively large proportion of papers published in the journal have ever been cited, indicating that the whole quality of the journal is considerably high. But due to its relatively short history of publication the journal still lacks papers with deep impact and great significance.

  12. Low-load resistance training with low relative pressure produces muscular changes similar to high-load resistance training.

    Science.gov (United States)

    Kim, Daeyeol; Loenneke, Jeremy P; Ye, Xin; Bemben, Debra A; Beck, Travis W; Larson, Rebecca D; Bemben, Michael G

    2017-12-01

    This study compares the acute and chronic response of high-load resistance training (HL) to low-load resistance training with low blood flow restriction (LL-BFR) pressure. Participants completed elbow flexion with either HL or LL-BFR or nonexercise. In the chronic study, participants in the HL and LL-BFR groups were trained for 8 weeks to determine differences in muscle size and strength. The acute study examined the changes in pretesting/posttesting (Pre/Post) torque, muscle swelling, and blood lactate. In the chronic study, similar changes in muscle size and strength were observed for both HL and LL-BFR. In the acute study, Pre/Post changes in the torque, muscle swelling, and blood lactate were similar between HL and LL-BFR. Our findings indicate that pressure as low as 50% arterial occlusion can produce similar changes in muscle mass and strength compared with traditional HL. Muscle Nerve 56: E126-E133, 2017. © 2017 Wiley Periodicals, Inc.

  13. The disastrous boomerang effects of "citation mania".

    Science.gov (United States)

    Perbal, Annick

    2017-08-07

    The recent publication of a commentary article by Dadkhah et al. (J Cell Commun Signal 11:181-185, 2017) which addressed issues raised by the citation of questionable scientific papers in current databases and the recent retraction of manuscripts dealing with the biological properties of the CCN1 protein by Lin et al. (J Biol Chem 291(53):27433, 2016) prompted us to examine how this situation reflects an evolution of the original citation system, endangering scientific communication. We argue that the increasing number of publication retractions that have been witnessed over several years is a direct consequence of the bias created by the inconsistency of citation metrics.

  14. Global transcriptional profiles of beating clusters derived from human induced pluripotent stem cells and embryonic stem cells are highly similar

    Directory of Open Access Journals (Sweden)

    Gupta Manoj K

    2010-09-01

    Full Text Available Abstract Background Functional and molecular integrity of cardiomyocytes (CMs derived from induced pluripotent stem (iPS cells is essential for their use in tissue repair, disease modelling and drug screening. In this study we compared global transcriptomes of beating clusters (BCs microdissected from differentiating human iPS cells and embryonic stem (ES cells. Results Hierarchical clustering and principal component analysis revealed that iPS-BCs and ES-BCs cluster together, are similarly enriched for cardiospecific genes and differ in expression of only 1.9% of present transcripts. Similarly, sarcomeric organization, electrophysiological properties and calcium handling of iPS-CMs were indistinguishable from those of ES-CMs. Gene ontology analysis revealed that among 204 genes that were upregulated in iPS-BCs vs ES-BCs the processes related to extracellular matrix, cell adhesion and tissue development were overrepresented. Interestingly, 47 of 106 genes that were upregulated in undifferentiated iPS vs ES cells remained enriched in iPS-BCs vs ES-BCs. Most of these genes were found to be highly expressed in fibroblasts used for reprogramming and 34% overlapped with the recently reported iPS cell-enriched genes. Conclusions These data suggest that iPS-BCs are transcriptionally highly similar to ES-BCs. However, iPS-BCs appear to share some somatic cell signature with undifferentiated iPS cells. Thus, iPS-BCs may not be perfectly identical to ES-BCs. These minor differences in the expression profiles may occur due to differential cellular composition of iPS-BCs and ES-BCs, due to retention of some genetic profile of somatic cells in differentiated iPS cell-derivatives, or both.

  15. Comparison of Journal Self-Citation Rates between Some Chinese and Non-Chinese International Journals

    Science.gov (United States)

    Yang, Zu-Guo; Gao, Feng; Zhang, Chun-Ting

    2012-01-01

    Background The past 3 decades have witnessed a boost in science development in China; in parallel, more and more Chinese scientific journals are indexed by the Journal Citation Reports issued by Thomson Reuters (SCI). Evaluation of the performance of these Chinese SCI journals is necessary and helpful to improve their quality. This study aimed to evaluate these journals by calculating various journal self-citation rates, which are important parameters influencing a journal impact factor. Methodology/Principal Findings We defined three journal self-citation rates, and studied these rates for 99 Chinese scientific journals, almost exhausting all Chinese SCI journals currently available. Likewise, we selected 99 non-Chinese international (abbreviated as ‘world’) journals, with each being in the same JCR subject category and having similar impact factors as their Chinese counterparts. Generally, Chinese journals tended to be higher in all the three self-citation rates than world journal counterparts. Particularly, a few Chinese scientific journals had much higher self-citation rates. Conclusions/Significance Our results show that generally Chinese scientific journals have higher self-citation rates than those of world journals. Consequently, Chinese scientific journals tend to have lower visibility and are more isolated in the relevant fields. Considering the fact that sciences are rapidly developing in China and so are Chinese scientific journals, we expect that the differences of journal self-citation rates between Chinese and world scientific journals will gradually disappear in the future. Some suggestions to solve the problems are presented. PMID:23173041

  16. 引用文獻分析與引用動機研究 Citation Analysis and Citation Motivation

    Directory of Open Access Journals (Sweden)

    Ming-yueh Tsay

    2001-06-01

    Full Text Available 無Citation analysis has been an important area of informetrics (or bibliometrics for severai decades. It mainly deals with the study of the relationship between citing and cited documents. A number of studies have been done to explore citation analysis and its applications. These studies have different opinions about the nature and the complexities of the citing process. Theories of citation have been debated for decades and can never be complete. By reviewing many empirical studies, this article describes the development and critique of citation analysis. especially focuses on the citation classifications, citation functions, citation concepts and citation motivations.

  17. A bibliometric analysis of the citation classics of acute appendicitis.

    Science.gov (United States)

    Varzgalis, Manvydas; Bowden, Dermot J; Mc Donald, Ciaran K; Kerin, Michael J

    2017-07-01

    Acute appendicitis is one of the most commonly encountered emergency surgical conditions. An understanding of the most highly cited research works in this field is key to good evidence based clinical practice. To perform a bibliometric analysis on the 100 most frequently cited articles in the field of acute appendicitis. The database of the Institute for Scientific Information (ISI) Web of Science Expanded citation index was searched to identify the 100 most frequently cited articles in the field of acute appendicitis. The web of science expanded citation index tracks article citations made since 1946. The top 100 most frequently cited articles were selected for analysis in this series. The most frequently cited article was cited 649 times and the least cited three article 93 times. The average number of citations per article was 167.74. The top 100 cited articles originated from 17 countries. Over half of the papers originated from the USA. Fifty-one of the papers concentrated on diagnostics of acute appendicitis. Thirty-six papers looked at the treatment of acute appendicitis with 30 of these dealing with the surgical management of the disease. There were 6 studies at level 1a, 20 studies at level 1b and 43,5,17 and 9 studies at levels 2, 3, 4 and 5 respectively. Bibliometric analysis of the citation classics in a given field can provide interesting insights into the relationship between the quality of research outputs and clinical practice. The study of acute appendicitis remains an active field of research with a growing body of higher quality evidence underpinning our clinical practice.

  18. A tale of two pectins: Diverse fine structures can result from identical processive PME treatments on similar high DM substrates.

    Science.gov (United States)

    Owen, J L; Kent, L M; Ralet, M-C; Cameron, R G; Williams, M A K

    2017-07-15

    The effects of a processive pectin-methylesterase (PME) treatment on two different pectins, both possessing a high degree of methylesterification (DM), were investigated. While the starting samples were purportedly very similar in fine structure, the intermolecular DM distributions arising from their PME treatments were strikingly different. Herein, a simulation that illuminates the origin of this phenomenon is described. It is concluded that: (1) very different low-DM samples (with the same average DM) can be generated using the same processive PME, simply by a judicious choice of the high DM starting material; (2) observing the intermolecular DM distribution of the products of processive-PME-processing is an extremely sensitive discriminator of the fine structure of high DM starting materials; and (3) for PMEs with unknown action patterns the processive nature of the enzyme is most simply revealed by studying the changes it induces in the intermolecular DM distribution of very-highly-methylesterified homogalacturonans. Copyright © 2017 Elsevier Ltd. All rights reserved.

  19. Bioinformatics paper exceeds 500 in citation index

    OpenAIRE

    Whyte, Barry James

    2010-01-01

    A scientific paper that includes contributions from scientists at the Virginia Bioinformatics Institute at Virginia Tech, has exceeded 500 citations in the ISI Web of Knowledge, an online academic database that documents the impact of scientific publications.

  20. Data publications correlate with citation impact

    Directory of Open Access Journals (Sweden)

    Florian Leitner

    2016-09-01

    Full Text Available Neuroscience and molecular biology have been generating large datasets over the past years that are reshaping how research is being conducted. In their wake, open data sharing has been singled out as a major challenge for the future of research. We conducted a comparative study of citations of data publications in both fields, showing that the average publication tagged with a data-related term by the NCBI MeSH (Medical Subject Headings curators achieves a significantly larger citation impact than the average in either field. We introduce a new metric, the data article citation index (DAC-index, to identify the most prolific authors among those data-related publications. The study is fully reproducible from an executable Rmd (R Markdown script together with all the citation datasets. We hope these results can encourage authors to more openly publish their data.

  1. Citation Patterns to Traditional and Electronic Preprints

    Directory of Open Access Journals (Sweden)

    Ya-Hsiu Fu

    2003-09-01

    Full Text Available A preprint or an e-print is a research article made publicly available prior to formal publication in a peer-reviewed journal. It is a new form of scholarly communication. To understand how preprint and e-print are used, this paper examined their citation patterns. This research searched the “cited work” field in the SciSearch database. The results showed that more than 657,713 preprints were cited from 1974 to 2003. As to e-print, 109,492 citations to 15 arXiv.org archives from 1991 to 2003 were found. Since1991, the number of citations to preprints had been decreasing, while the e-prints cited had increased. The peak e-print citation rate of 3 years observed was comparable to that of print journals.[Article content in Chinese

  2. Mapping the Chinese Science Citation Database

    CERN Document Server

    Leydesdorff, Loet

    2009-01-01

    Methods developed for mapping the journal structures contained in aggregated journal-journal citations in the Science Citation Index are applied to the Chinese Science Citation Database of the Chinese Academy of Sciences. This database covers 991 journals, of which only 37 had originally English titles. Using factor-analytical and graph-analytical techniques we show that this data is dually structured. The main structure is the intellectual organization of the journals in journal groups (as in the international SCI), but the university-based journals provide an institutional layer that orients this structure towards practical ends (e.g., agriculture). The Chinese Science Citation Database exhibits the characteristics of Mode 2 in the production of scientific knowledge more than its western counterparts. The contexts of application lead to correlation (interfactorial complexity) among the components.

  3. Twitter Predicts Citation Rates of Ecological Research

    OpenAIRE

    Peoples, Brandon K.; Midway, Stephen R.; Dana Sackett; Abigail Lynch; Patrick B Cooney

    2016-01-01

    The relationship between traditional metrics of research impact (e.g., number of citations) and alternative metrics (altmetrics) such as Twitter activity are of great interest, but remain imprecisely quantified. We used generalized linear mixed modeling to estimate the relative effects of Twitter activity, journal impact factor, and time since publication on Web of Science citation rates of 1,599 primary research articles from 20 ecology journals published from 2012-2014. We found a strong po...

  4. Clustering of scientific citations in Wikipedia

    DEFF Research Database (Denmark)

    Nielsen, Finn Årup

    The instances of templates in Wikipedia form an interesting data set of structured information. Here I focus on the cite journal template that is primarily used for citation to articles in scientific journals. These citations can be extracted and analyzed: Non-negative matrix factorization...... is performed on a (article x journal) matrix resulting in a soft clustering of Wikipedia articles and scientific journals, each cluster more or less representing a scientific topic....

  5. Servomotors . (Latest citations from the Aerospace Database)

    Science.gov (United States)

    1997-01-01

    The bibliography contains citations concerning the design, testing, and application of servomotors. AC, DC, and brushless motor drives are discussed. Applications are examined, including use in hydraulic presses; teleprinters; machine tools; sewing machines; and servocontrol devices for instrumentation, robots, and aircraft control. Testing methods evaluate precision, vibration and vibration reduction, and stability of servomotors. (Contains 50-250 citations and includes a subject term index and title list.)

  6. Co-citation, bibliographic coupling and a characterization of lattice citation networks

    OpenAIRE

    Egghe, Leo; Rousseau, Ronald

    2002-01-01

    In this article we study directed, acyclic graphs. We introduce the head and tail order relations and study some of their properties. Recalling the notions of generalized bibliographic coupling and generalized co-citation, and introducing a new property, called the l - property, we come to a characterization of lattices. As document citation networks are concrete realizations of directed acyclic graphs all our results are directly applicable to citation analysis. bibliographic coupling; co...

  7. A Highly Similar Mathematical Model for Cerebral Blood Flow Velocity in Geriatric Patients with Suspected Cerebrovascular Disease

    Science.gov (United States)

    Liu, Bo; Li, Qi; Wang, Jisheng; Xiang, Hu; Ge, Hong; Wang, Hui; Xie, Peng

    2015-10-01

    Cerebral blood flow velocity(CBFV) is an important parameter for study of cerebral hemodynamics. However, a simple and highly similar mathematical model has not yet been established for analyzing CBFV. To alleviate this issue, through TCD examination in 100 geriatric patients with suspected cerebrovascular disease (46 males and 54 females), we established a representative eighth-order Fourier function Vx(t) that simulates the CBFV. The measured TCD waveforms were compared to those derived from Vx(t), an illustrative Kolmogorov-Smirnov test was employed to determine the validity. The results showed that the TCD waves could been reconstructed for patients with different CBFVs by implementing their variable heart rates and the formulated maximum/minimum of Vx(t). Comparisons between derived and measured TCD waveforms suggest that the two waveforms are very similar. The results confirm that CBFV can be well-modeled through an eighth-order Fourier function. This function Vx(t) can be used extensively for a prospective study of cerebral hemodynamics in geriatric patients with suspected cerebrovascular disease.

  8. Citation Sentiment Analysis in Clinical Trial Papers.

    Science.gov (United States)

    Xu, Jun; Zhang, Yaoyun; Wu, Yonghui; Wang, Jingqi; Dong, Xiao; Xu, Hua

    2015-01-01

    In scientific writing, positive credits and negative criticisms can often be seen in the text mentioning the cited papers, providing useful information about whether a study can be reproduced or not. In this study, we focus on citation sentiment analysis, which aims to determine the sentiment polarity that the citation context carries towards the cited paper. A citation sentiment corpus was annotated first on clinical trial papers. The effectiveness of n-gram and sentiment lexicon features, and problem-specified structure features for citation sentiment analysis were then examined using the annotated corpus. The combined features from the word n-grams, the sentiment lexicons and the structure information achieved the highest Micro F-score of 0.860 and Macro-F score of 0.719, indicating that it is feasible to use machine learning methods for citation sentiment analysis in biomedical publications. A comprehensive comparison between citation sentiment analysis of clinical trial papers and other general domains were conducted, which additionally highlights the unique challenges within this domain.

  9. Lycopene and tomato powder supplementation similarly inhibit high-fat diet induced obesity, inflammatory response, and associated metabolic disorders.

    Science.gov (United States)

    Fenni, Soumia; Hammou, Habib; Astier, Julien; Bonnet, Lauriane; Karkeni, Esma; Couturier, Charlène; Tourniaire, Franck; Landrier, Jean-François

    2017-09-01

    Several studies have linked the high intake of lycopene or tomatoes products with lower risk for metabolic diseases. The aim of the present study was to evaluate and to compare the effect of lycopene and tomato powder on obesity-associated disorders. Male C57BL/J6 mice were assigned into four groups to receive: control diet (CD), high fat diet (HFD), high fat diet supplemented with lycopene or with tomato powder (TP) for 12 weeks. In HFD condition, lycopene and TP supplementation significantly reduced adiposity index, organ, and relative organ weights, serum triglycerides, free fatty acids, 8-iso-prostaglandin GF2α and improved glucose homeostasis, but did not affect total body weight. Lycopene and TP supplementation prevented HFD-induced hepatosteatosis and hypertrophy of adipocytes. Lycopene and TP decreased HFD-induced proinflammatory cytokine mRNA expression in the liver and in the epididymal adipose tissue. The anti-inflammatory effect of lycopene and TP was related to a reduction in the phosphorylation levels of IκB, and p65, and resulted in a decrease of inflammatory proteins in adipose tissue. These results suggest that lycopene or TP supplementation display similar beneficial health effects that could be particularly relevant in the context of nutritional approaches to fight obesity-associated pathologies. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  10. High frequency of hepatitis E virus infection in swine from South Brazil and close similarity to human HEV isolates

    Directory of Open Access Journals (Sweden)

    Ana Maria Passos-Castilho

    Full Text Available Abstract Hepatitis E virus is responsible for acute and chronic liver infections worldwide. Swine hepatitis E virus has been isolated in Brazil, and a probable zoonotic transmission has been described, although data are still scarce. The aim of this study was to investigate the frequency of hepatitis E virus infection in pigs from a small-scale farm in the rural area of Paraná State, South Brazil. Fecal samples were collected from 170 pigs and screened for hepatitis E virus RNA using a duplex real-time RT-PCR targeting a highly conserved 70 nt long sequence within overlapping parts of ORF2 and ORF3 as well as a 113 nt sequence of ORF2. Positive samples with high viral loads were subjected to direct sequencing and phylogenetic analysis. hepatitis E virus RNA was detected in 34 (20.0% of the 170 pigs following positive results in at least one set of screening real-time RT-PCR primers and probes. The swine hepatitis E virus strains clustered with the genotype hepatitis E virus-3b reference sequences in the phylogenetic analysis and showed close similarity to human hepatitis E virus isolates previously reported in Brazil.

  11. The importance of proper citation of references in biomedical articles.

    Science.gov (United States)

    Masic, Izet

    2013-01-01

    In scientific circles, the reference is the information that is necessary to the reader in identifying and finding used sources. The basic rule when listing the sources used is that references must be accurate, complete and should be consistently applied. On the other hand, quoting implies verbatim written or verbal repetition of parts of the text or words written by others that can be checked in original. Authors of every new scientific article need to explain how their study or research fits with previous one in the same or similar fields. A typical article in the health sciences refers to approximately 20-30 other articles published in peer reviewed journals, cite once or hundreds times. Citations typically appear in two formats: a) as in-text citations where the sources of information are briefly identified in the text; or b) in the reference list at the end of the publication (book chapter, manuscript, article, etc.) that provides full bibliographic information for each source. Group of publishers met in Vancouver in 1978 and decided to prescribe uniform technical propositions for publication. Adopted in the 1979 by the National Library of Medicine in Bethesda, then the International Committee of Medical Journals Editors (ICMJE), whose review in 1982 entered the official application by 300 international biomedical journals. Authors writing articles for publication in biomedical publications used predominantly citation styles: Vancouver style, Harward style, PubMed style, ICMJE, APA, etc. The paper gives examples of all of these styles of citation to the authors in order to facilitate their applications. Also in this paper is given the review about the problem of plagiarism which becomes more common in the writing of scientific and technical articles in biomedicine.

  12. Feature engineering for MEDLINE citation categorization with MeSH.

    Science.gov (United States)

    Jimeno Yepes, Antonio Jose; Plaza, Laura; Carrillo-de-Albornoz, Jorge; Mork, James G; Aronson, Alan R

    2015-04-08

    Research in biomedical text categorization has mostly used the bag-of-words representation. Other more sophisticated representations of text based on syntactic, semantic and argumentative properties have been less studied. In this paper, we evaluate the impact of different text representations of biomedical texts as features for reproducing the MeSH annotations of some of the most frequent MeSH headings. In addition to unigrams and bigrams, these features include noun phrases, citation meta-data, citation structure, and semantic annotation of the citations. Traditional features like unigrams and bigrams exhibit strong performance compared to other feature sets. Little or no improvement is obtained when using meta-data or citation structure. Noun phrases are too sparse and thus have lower performance compared to more traditional features. Conceptual annotation of the texts by MetaMap shows similar performance compared to unigrams, but adding concepts from the UMLS taxonomy does not improve the performance of using only mapped concepts. The combination of all the features performs largely better than any individual feature set considered. In addition, this combination improves the performance of a state-of-the-art MeSH indexer. Concerning the machine learning algorithms, we find that those that are more resilient to class imbalance largely obtain better performance. We conclude that even though traditional features such as unigrams and bigrams have strong performance compared to other features, it is possible to combine them to effectively improve the performance of the bag-of-words representation. We have also found that the combination of the learning algorithm and feature sets has an influence in the overall performance of the system. Moreover, using learning algorithms resilient to class imbalance largely improves performance. However, when using a large set of features, consideration needs to be taken with algorithms due to the risk of over-fitting. Specific

  13. The Importance of Proper Citation of References in Biomedical Articles

    Science.gov (United States)

    Masic, Izet

    2013-01-01

    In scientific circles, the reference is the information that is necessary to the reader in identifying and finding used sources. The basic rule when listing the sources used is that references must be accurate, complete and should be consistently applied. On the other hand, quoting implies verbatim written or verbal repetition of parts of the text or words written by others that can be checked in original. Authors of every new scientific article need to explain how their study or research fits with previous one in the same or similar fields. A typical article in the health sciences refers to approximately 20-30 other articles published in peer reviewed journals, cite once or hundreds times. Citations typically appear in two formats: a) as in-text citations where the sources of information are briefly identified in the text; or b) in the reference list at the end of the publication (book chapter, manuscript, article, etc.) that provides full bibliographic information for each source. Group of publishers met in Vancouver in 1978 and decided to prescribe uniform technical propositions for publication. Adopted in the 1979 by the National Library of Medicine in Bethesda, then the International Committee of Medical Journals Editors (ICMJE), whose review in 1982 entered the official application by 300 international biomedical journals. Authors writing articles for publication in biomedical publications used predominantly citation styles: Vancouver style, Harward style, PubMed style, ICMJE, APA, etc. The paper gives examples of all of these styles of citation to the authors in order to facilitate their applications. Also in this paper is given the review about the problem of plagiarism which becomes more common in the writing of scientific and technical articles in biomedicine. PMID:24167381

  14. The Transition Towards Immortality: Non-linear Autocatalytic Growth of Citations to Scientific Papers

    Science.gov (United States)

    Golosovsky, Michael; Solomon, Sorin

    2013-04-01

    We discuss microscopic mechanisms of complex network growth, with the special emphasis of how these mechanisms can be evaluated from the measurements on real networks. As an example we consider the network of citations to scientific papers. Contrary to common belief that its growth is determined by the linear preferential attachment, our microscopic measurements show that it is driven by the nonlinear autocatalytic growth. This invalidates the scale-free hypothesis for the citation network. The nonlinearity is responsible for a dramatic dynamical phase transition: while the citation lifetime of majority of papers is 6-10 years, the highly-cited papers have practically infinite lifetime.

  15. High and low contact frequency cardiac rehabilitation programmes elicit similar improvements in cardiorespiratory fitness and cardiovascular risk factors.

    Science.gov (United States)

    LaHaye, Stephen A; Lacombe, Shawn P; Koppikar, Sahil; Lun, Grace; Parsons, Trisha L; Hopkins-Rosseel, Diana

    2014-12-01

    Cardiac rehabilitation (CR) is a proven intervention that substantially improves physical health and decreases death and disability following a cardiovascular event. Traditional CR typically involves 36 on-site exercise sessions spanning a 12-week period. To date, the optimal dose of CR has yet to be determined. This study compared a high contact frequency CR programme (HCF, 34 on-site sessions) with a low contact frequency CR programme (LCF, eight on-site sessions) of equal duration (4 months). A total of 961 low-risk cardiac patients (RARE score cardiovascular risk factors were measured on admission and discharge. Similar proportions of patients completed HCF (n = 346) and LCF (n = 351) (p = 0.398). Patients who were less fit (<8 METs) were more likely to drop out of the LCF group, while younger patients (<60 years) were more likely to drop out of the HCF group. Both groups experienced similar reductions in weight (-2.3 vs. -2.4 kg; p = 0.779) and improvements in cardiorespiratory fitness (+1.5 vs. +1.4 METs; p = 0.418). Patients in the LCF programme achieved equivalent results to those in the HCF programme. Certain subgroups of patients, however, may benefit from participation in a HCF programme, including those patients who are predisposed to prematurely discontinuing the programme and those patients who would benefit from increased monitoring. The LCF model can be employed as an alternative option to widen access and participation for patients who are unable to attend HCF programmes due to distance or time limitations. © The Author(s) 2013 Reprints and permissions: sagepub.co.uk/journalsPermissions.nav.

  16. The level of non-citation of articles within a journal as a measure of quality: a comparison to the impact factor

    Science.gov (United States)

    Weale, Andy R; Bailey, Mick; Lear, Paul A

    2004-01-01

    Background Current methods of measuring the quality of journals assume that citations of articles within journals are normally distributed. Furthermore using journal impact factors to measure the quality of individual articles is flawed if citations are not uniformly spread between articles. The aim of this study was to assess the distribution of citations to articles and use the level of non-citation of articles within a journal as a measure of quality. This ranking method is compared with the impact factor, as calculated by ISI®. Methods Total citations gained by October 2003, for every original article and review published in current immunology (13125 articles; 105 journals) and surgical (17083 articles; 120 journals) fields during 2001 were collected using ISI® Web of Science. Results The distribution of citation of articles within an individual journal is mainly non-parametric throughout the literature. One sixth (16.7%; IQR 13.6–19.2) of articles in a journal accrue half the total number of citations to that journal. There was a broader distribution of citation to articles in higher impact journals and in the field of immunology compared to surgery. 23.7% (IQR 14.6–42.4) of articles had not yet been cited. Levels of non-citation varied between journals and subject fields. There was a significant negative correlation between the proportion of articles never cited and a journal's impact factor for both immunology (rho = -0.854) and surgery journals (rho = -0.924). Conclusion Ranking journals by impact factor and non-citation produces similar results. Using a non-citation rate is advantageous as it creates a clear distinction between how citation analysis is used to determine the quality of a journal (low level of non-citation) and an individual article (citation counting). Non-citation levels should therefore be made available for all journals. PMID:15169549

  17. Are shorter article titles more attractive for citations? Cross-sectional study of 22 scientific journals.

    Science.gov (United States)

    Habibzadeh, Farrokh; Yadollahie, Mahboobeh

    2010-04-01

    To investigate the correlation between the length of the title of a scientific article and the number of citations it receives, in view of the common editorial call for shorter titles. Title and the number of citations to all articles published in 2005 in 22 arbitrarily chosen English-language journals (n=9031) were retrieved from citation database Scopus. The 2008 journal impact factors of these 22 journals were also retrieved from Thomson Reuters' Journal Citation Report (JCR). Assuming the article title length as the independent variable, and the number of citations to the article as the dependent variable, a linear regression model was applied. The slope of the regression line for some journals (n=6, when titles were measured in characters but 7 when titles were measured in words) was negative - none was significantly different from 0. The overall slope for all journals was 0.140 (when titles were measured in characters) and 0.778 (when titles were measured in words), which is significantly different from 0 (Ptitles received more citations - Spearman rho=0.266 - when titles were measured in characters, and rho=0.244 when titles were measured in words (P10 and for 2 out of 14 journals with impact factor titles seem to be associated with higher citation rates. This association is more pronounced for journals with high impact factors. Editors who insist on brief and concise titles should perhaps update the guidelines for authors of their journals and have more flexibility regarding the length of the title.

  18. Clinical reports of pulmonary metastasectomy for colorectal cancer: a citation network analysis.

    Science.gov (United States)

    Fiorentino, F; Vasilakis, C; Treasure, T

    2011-03-29

    Pulmonary metastasectomy for colorectal cancer is a commonly performed and well-established practice of ∼50 years standing. However, there have been no controlled studies, randomised or otherwise. We sought to investigate the evidence base that has been used in establishing its status as a standard of care. Among 51 papers used in a recent systematic review and quantitative synthesis, a citation network analysis was performed. A total of 344 publications (the 51 index papers and a further 293 cited in them) constitute the citation network. The pattern of citation is that of a citation cascade. Specific analyses show the frequent use of historical or landmark papers, which add authority. Papers expressing an opposing viewpoint are rarely cited. The citation network for this common and well-established practice provides an example of selective citation. This pattern of citation tends to escalate belief in a clinical practice even when it lacks a high-quality evidence base and may create an impression of more authority than is warranted.

  19. Fibroblasts from phenotypically normal palmar fascia exhibit molecular profiles highly similar to fibroblasts from active disease in Dupuytren's Contracture

    Directory of Open Access Journals (Sweden)

    Satish Latha

    2012-05-01

    Full Text Available Abstract Background Dupuytren's contracture (DC is a fibroproliferative disorder characterized by the progressive development of a scar-like collagen-rich cord that affects the palmar fascia of the hand and leads to digital flexion contractures. DC is most commonly treated by surgical resection of the diseased tissue, but has a high reported recurrence rate ranging from 27% to 80%. We sought to determine if the transcriptomic profiles of fibroblasts derived from DC-affected palmar fascia, adjacent phenotypically normal palmar fascia, and non-DC palmar fascial tissues might provide mechanistic clues to understanding the puzzle of disease predisposition and recurrence in DC. Methods To achieve this, total RNA was obtained from fibroblasts derived from primary DC-affected palmar fascia, patient-matched unaffected palmar fascia, and palmar fascia from non-DC patients undergoing carpal tunnel release (6 patients in each group. These cells were grown on a type-1 collagen substrate (to better mimic their in vivo environments. Microarray analyses were subsequently performed using Illumina BeadChip arrays to compare the transcriptomic profiles of these three cell populations. Data were analyzed using Significance Analysis of Microarrays (SAM v3.02, hierarchical clustering, concordance mapping and Venn diagram. Results We found that the transcriptomic profiles of DC-disease fibroblasts and fibroblasts from unaffected fascia of DC patients exhibited a much greater overlap than fibroblasts derived from the palmar fascia of patients undergoing carpal tunnel release. Quantitative real time RT-PCR confirmed the differential expression of select genes validating the microarray data analyses. These data are consistent with the hypothesis that predisposition and recurrence in DC may stem, at least in part, from intrinsic similarities in the basal gene expression of diseased and phenotypically unaffected palmar fascia fibroblasts. These data also demonstrate that

  20. Fibroblasts from phenotypically normal palmar fascia exhibit molecular profiles highly similar to fibroblasts from active disease in Dupuytren's Contracture

    Science.gov (United States)

    2012-01-01

    Background Dupuytren's contracture (DC) is a fibroproliferative disorder characterized by the progressive development of a scar-like collagen-rich cord that affects the palmar fascia of the hand and leads to digital flexion contractures. DC is most commonly treated by surgical resection of the diseased tissue, but has a high reported recurrence rate ranging from 27% to 80%. We sought to determine if the transcriptomic profiles of fibroblasts derived from DC-affected palmar fascia, adjacent phenotypically normal palmar fascia, and non-DC palmar fascial tissues might provide mechanistic clues to understanding the puzzle of disease predisposition and recurrence in DC. Methods To achieve this, total RNA was obtained from fibroblasts derived from primary DC-affected palmar fascia, patient-matched unaffected palmar fascia, and palmar fascia from non-DC patients undergoing carpal tunnel release (6 patients in each group). These cells were grown on a type-1 collagen substrate (to better mimic their in vivo environments). Microarray analyses were subsequently performed using Illumina BeadChip arrays to compare the transcriptomic profiles of these three cell populations. Data were analyzed using Significance Analysis of Microarrays (SAM v3.02), hierarchical clustering, concordance mapping and Venn diagram. Results We found that the transcriptomic profiles of DC-disease fibroblasts and fibroblasts from unaffected fascia of DC patients exhibited a much greater overlap than fibroblasts derived from the palmar fascia of patients undergoing carpal tunnel release. Quantitative real time RT-PCR confirmed the differential expression of select genes validating the microarray data analyses. These data are consistent with the hypothesis that predisposition and recurrence in DC may stem, at least in part, from intrinsic similarities in the basal gene expression of diseased and phenotypically unaffected palmar fascia fibroblasts. These data also demonstrate that a collagen

  1. CiTO, the Citation Typing Ontology

    Science.gov (United States)

    2010-01-01

    CiTO, the Citation Typing Ontology, is an ontology for describing the nature of reference citations in scientific research articles and other scholarly works, both to other such publications and also to Web information resources, and for publishing these descriptions on the Semantic Web. Citation are described in terms of the factual and rhetorical relationships between citing publication and cited publication, the in-text and global citation frequencies of each cited work, and the nature of the cited work itself, including its publication and peer review status. This paper describes CiTO and illustrates its usefulness both for the annotation of bibliographic reference lists and for the visualization of citation networks. The latest version of CiTO, which this paper describes, is CiTO Version 1.6, published on 19 March 2010. CiTO is written in the Web Ontology Language OWL, uses the namespace http://purl.org/net/cito/, and is available from http://purl.org/net/cito/. This site uses content negotiation to deliver to the user an OWLDoc Web version of the ontology if accessed via a Web browser, or the OWL ontology itself if accessed from an ontology management tool such as Protégé 4 (http://protege.stanford.edu/). Collaborative work is currently under way to harmonize CiTO with other ontologies describing bibliographies and the rhetorical structure of scientific discourse. PMID:20626926

  2. Pleomorphic lobular carcinoma: is it more similar to a classic lobular cancer or to a high-grade ductal cancer?

    Directory of Open Access Journals (Sweden)

    Costarelli L

    2017-12-01

    Full Text Available Leopoldo Costarelli, Domenico Campagna, Alessandra Ascarelli, Francesco Cavaliere, Maria Helena Colavito, Tatiana Ponzani, Laura Broglia, Massimo La Pinta, Elena Manna, Lucio Fortunato Breast Unit, San Giovanni-Addolorata Hospital, Rome, Italy Background: Pleomorphic invasive lobular carcinoma (P-ILC is an uncommon variety of invasive lobular carcinoma with aggressive clinical features. Little is described in the literature regarding this topic.Materials and methods: We reviewed our experiences from 2010 to 2015 and compared 40 patients with P-ILC, 126 patients with classic-ILC (C-ILC and 574 cases of high-grade invasive ductal carcinoma (HG-IDC. We studied the histologic and immunohistochemical features, clinical presentation and surgical treatment.Results: P-ILC is diagnosed at the same age and tumor diameter as those of the other two histologic types. It is associated more frequently with multiple lymph node metastases and high proliferative index, and HER2/neu is amplified in 10% of cases. In spite of sharing some histologic characteristics with C-ILC (same growth pattern, loss of E-cadherin expression, same genetic pathway, its clinical and pathologic features define an autonomous entity. Its surgical treatment is similar to those of C-ILC and HG-IDC.Conclusion: This is the first review comparing these three pathologic entities. Our findings may be useful in understanding this variety of invasive lobular carcinoma, and further studies are certainly needed in this field. Keywords: breast cancer, lobular cancer, pleomorphic, mastectomy

  3. Similar cardiometabolic effects of high- and moderate-intensity training among apparently healthy inactive adults: a randomized clinical trial.

    Science.gov (United States)

    Ramírez-Vélez, Robinson; Tordecilla-Sanders, Alejandra; Téllez-T, Luis Andrés; Camelo-Prieto, Diana; Hernández-Quiñonez, Paula Andrea; Correa-Bautista, Jorge Enrique; Garcia-Hermoso, Antonio; Ramirez-Campillo, Rodrigo; Izquierdo, Mikel

    2017-05-30

    Metabolic syndrome (MetS) increases the risk of morbidity and mortality from cardiovascular disease, and exercise training is an important factor in the treatment and prevention of the clinical components of MetS. The aim was to compare the effects of high-intensity interval training and steady-state moderate-intensity training on clinical components of MetS in healthy physically inactive adults. Twenty adults were randomly allocated to receive either moderate-intensity continuous training [MCT group; 60-80% heart rate reserve (HRR)] or high-intensity interval training (HIT group; 4 × 4 min at 85-95% peak HRR interspersed with 4 min of active rest at 65% peak HRR). We used the revised International Diabetes Federation criteria for MetS. A MetS Z-score was calculated for each individual and each component of the MetS. In intent-to-treat analyses, the changes in MetS Z-score were 1.546 (1.575) in the MCT group and -1.249 (1.629) in the HIT group (between-groups difference, P =  0.001). The average number of cardiometabolic risk factors changed in the MCT group (-0.133, P = 0.040) but not in the HIT group (0.018, P = 0.294), with no difference between groups (P = 0.277). Among apparently healthy physically inactive adults, HIT and MCT offer similar cardiometabolic protection against single MetS risk factors but differ in their effect on average risk factors per subject. Trial registration ClinicalTrials.gov NCT02738385 registered on March 23, 2016.

  4. Citation analysis of meta-analysis articles on posttraumatic stress disorder.

    Science.gov (United States)

    Liao, Xi-Ming; Chen, Ping-Yan

    2011-04-01

    In the past two decades enormously scientific researches on posttraumatic stress disorder (PTSD) have been undertaken and many related meta-analyses have been published. Citation analysis was used to get comprehensive perspectives of meta-analysis articles (MA articles) on PTSD for the purpose of facilitating the researchers, physicians and policy-makers to understand the PTSD. MA articles on PTSD in any languages from January 1980 to March 2009 were included if they presented meta-analytical methods and received at least one citation recorded in the Web of Science (WoS). Whereas studies, in which any effect sizes of PTSD were not distinguished from other psychological disorders, were excluded. Citations to and by identified MA articles were documented basing on records in WoS. Citation analysis was used to examine distribution patterns of characteristics and citation impact of MA articles on PTSD. Canonical analysis was used to explore the relationship between the characteristics of MA articles and citation impact. Thirty-four MA articles published during 1998 and 2008 were identified and revealed multiple study topics on PTSD: 10 (29.4%) were about epidemiology, 13 (38.2%) about treatment or intervention, 6 (17.6%) about pathophysiology or neurophysiology or neuroendocrine, 3 (8.8%) about childhood and 2 (5.9%) about psychosocial adversity. Two articles cited most frequently with 456 and 145 counts were published in Journal of Consulting and Clinical Psychology by Brewin (2000) and Psychological Bulletin by Ozer (2003), respectively. Mean cited count was 7.48 ± 10.56 and mean age (year 2009 minus article publication year) was (4.24 ± 2.91) years. They had been cited approximately by 67 disciplines and by authors from 42 countries or territories. Characteristics of meta-analysis highly correlated with citation impact and reflected by canonical correlation of 0.899 (P citation impact. Citation analysis would serve to capture the global perspectives and topics of

  5. [The citation analysis of the publications in Chinese Journal of Preventive Medicine, 2000-2005].

    Science.gov (United States)

    Lü, Xiang-zheng; Xue, Ai-hua; You, Su-ning; Liu, Qun; Zhou, Pei-zhen

    2008-06-01

    To carry out the citation analysis of publications in Chinese Journal of Preventive Medicine (CJPM) among the preventive medicine authors and analyze the impact of this magazine in preventive medicine domain. Using Chinese scientific periodical literature evaluation and statistical analysis system (V1.0), the citation status of all CJPM publications in 2000-2005 was analyzed, the analysis covered 21 columns, including the review, editorial and original article, the data were collected up to November, 2007. From 2000 to 2005, CJPM had more than 30 columns and carried 1196 articles and 92. 89% (1111/1196) articles were from 21 main columns. During 2003 to 2005, the impact factors of CJPM were 0. 897, 1.011 and 0. 891 respectively. Among 21 main columns, the citation frequency of six columns including original article, editorial, review, courses, discussion and case report were higher than 80%. In five columns (original article, editorial, report, review and academic trends), the average citation frequency of individual articles was more than 4 times. The citation frequency of 20 authors was higher than 20 times and these authors were from medical schools, teaching hospitals, centers of diseases control and the research institutes. The individual citation frequency of 17 articles was more than 20 times and the individual citation frequency of three articles was more than 50 times. 34.9% of the citations of the 2000-2005 CJPM articles were from the top 20 journals, and the self-citation rate was 4. 85%. The publications in Chinese Journal of Preventive Medicine are most frequently cited, which indicated that those publications have high quality, this journal has a great effect in preventive medicine field of China.

  6. Citation analysis may severely underestimate the impact of clinical research as compared to basic research.

    Science.gov (United States)

    van Eck, Nees Jan; Waltman, Ludo; van Raan, Anthony F J; Klautz, Robert J M; Peul, Wilco C

    2013-01-01

    Citation analysis has become an important tool for research performance assessment in the medical sciences. However, different areas of medical research may have considerably different citation practices, even within the same medical field. Because of this, it is unclear to what extent citation-based bibliometric indicators allow for valid comparisons between research units active in different areas of medical research. A visualization methodology is introduced that reveals differences in citation practices between medical research areas. The methodology extracts terms from the titles and abstracts of a large collection of publications and uses these terms to visualize the structure of a medical field and to indicate how research areas within this field differ from each other in their average citation impact. Visualizations are provided for 32 medical fields, defined based on journal subject categories in the Web of Science database. The analysis focuses on three fields: Cardiac & cardiovascular systems, Clinical neurology, and Surgery. In each of these fields, there turn out to be large differences in citation practices between research areas. Low-impact research areas tend to focus on clinical intervention research, while high-impact research areas are often more oriented on basic and diagnostic research. Popular bibliometric indicators, such as the h-index and the impact factor, do not correct for differences in citation practices between medical fields. These indicators therefore cannot be used to make accurate between-field comparisons. More sophisticated bibliometric indicators do correct for field differences but still fail to take into account within-field heterogeneity in citation practices. As a consequence, the citation impact of clinical intervention research may be substantially underestimated in comparison with basic and diagnostic research.

  7. Similar Anti-Inflammatory Acute Responses from Moderate-Intensity Continuous and High-Intensity Intermittent Exercise

    Directory of Open Access Journals (Sweden)

    Carolina Cabral-Santos, José Gerosa-Neto, Daniela Sayuri Inoue, Valéria Leme Gonçalves Panissa, Luís Alberto Gobbo, Alessandro Moura Zagatto, Eduardo Zapaterra Campos, Fábio Santos Lira

    2015-12-01

    Full Text Available The purpose of this study was to compare the effect of high-intensity intermittent exercise (HIIE versus volume matched steady state exercise (SSE on inflammatory and metabolic responses. Eight physically active male subjects completed two experimental sessions, a 5-km run on a treadmill either continuously (70% vVO2max or intermittently (1:1 min at vVO2max. Blood samples were collected at rest, immediately, 30 and 60 minutes after the exercise session. Blood was analyzed for glucose, non-ester fatty acid (NEFA, uric acid, lactate, cortisol, and cytokines (IL-6, IL-10 and TNF-α levels. The lactate levels exhibited higher values immediately post-exercise than at rest (HIIE 1.34 ± 0.24 to 7.11 ± 2.85, and SSE 1.35 ± 0.14 to 4.06±1.60 mmol·L-1, p 0.05. Cortisol, IL-6, IL-10 and TNF-α levels showed time-dependent changes under the different conditions (p < 0.05, however, the area under the curve of TNF-α in the SSE were higher than HIIE (p < 0.05, and the area under the curve of IL-6 in the HIIE showed higher values than SSE (p < 0.05. In addition, both exercise conditions promote increased IL-10 levels and IL-10/TNF-α ratio (p < 0.05. In conclusion, our results demonstrated that both exercise protocols, when volume is matched, promote similar inflammatory responses, leading to an anti-inflammatory status; however, the metabolic responses are different.

  8. Similar Anti-Inflammatory Acute Responses from Moderate-Intensity Continuous and High-Intensity Intermittent Exercise.

    Science.gov (United States)

    Cabral-Santos, Carolina; Gerosa-Neto, José; Inoue, Daniela Sayuri; Panissa, Valéria Leme Gonçalves; Gobbo, Luís Alberto; Zagatto, Alessandro Moura; Campos, Eduardo Zapaterra; Lira, Fábio Santos

    2015-12-01

    The purpose of this study was to compare the effect of high-intensity intermittent exercise (HIIE) versus volume matched steady state exercise (SSE) on inflammatory and metabolic responses. Eight physically active male subjects completed two experimental sessions, a 5-km run on a treadmill either continuously (70% vVO2max) or intermittently (1:1 min at vVO2max). Blood samples were collected at rest, immediately, 30 and 60 minutes after the exercise session. Blood was analyzed for glucose, non-ester fatty acid (NEFA), uric acid, lactate, cortisol, and cytokines (IL-6, IL-10 and TNF-α) levels. The lactate levels exhibited higher values immediately post-exercise than at rest (HIIE 1.34 ± 0.24 to 7.11 ± 2.85, and SSE 1.35 ± 0.14 to 4.06±1.60 mmol·L(-1), p 0.05). Cortisol, IL-6, IL-10 and TNF-α levels showed time-dependent changes under the different conditions (p < 0.05), however, the area under the curve of TNF-α in the SSE were higher than HIIE (p < 0.05), and the area under the curve of IL-6 in the HIIE showed higher values than SSE (p < 0.05). In addition, both exercise conditions promote increased IL-10 levels and IL-10/TNF-α ratio (p < 0.05). In conclusion, our results demonstrated that both exercise protocols, when volume is matched, promote similar inflammatory responses, leading to an anti-inflammatory status; however, the metabolic responses are different. Key pointsMetabolic contribution of both exercise, HIIE and SSE, was different.Both protocols leading to an anti-inflammatory status.HIIE induce a higher energy expenditure take into account total session duration.

  9. Whole Genome Sequence of the Treponema Fribourg-Blanc: Unspecified Simian Isolate Is Highly Similar to the Yaws Subspecies

    Science.gov (United States)

    Zobaníková, Marie; Strouhal, Michal; Mikalová, Lenka; Čejková, Darina; Ambrožová, Lenka; Pospíšilová, Petra; Fulton, Lucinda L.; Chen, Lei; Sodergren, Erica; Weinstock, George M.; Šmajs, David

    2013-01-01

    Background Unclassified simian strain Treponema Fribourg-Blanc was isolated in 1966 from baboons (Papio cynocephalus) in West Africa. This strain was morphologically indistinguishable from T. pallidum ssp. pallidum or ssp. pertenue strains, and it was shown to cause human infections. Methodology/Principal Findings To precisely define genetic differences between Treponema Fribourg-Blanc (unclassified simian isolate, FB) and T. pallidum ssp. pertenue strains (TPE), a high quality sequence of the whole Fribourg-Blanc genome was determined with 454-pyrosequencing and Illumina sequencing platforms. Combined average coverage of both methods was greater than 500×. Restriction target sites (n = 1,773), identified in silico, of selected restriction enzymes within the Fribourg-Blanc genome were verified experimentally and no discrepancies were found. When compared to the other three sequenced TPE genomes (Samoa D, CDC-2, Gauthier), no major genome rearrangements were found. The Fribourg-Blanc genome clustered with other TPE strains (especially with the TPE CDC-2 strain), while T. pallidum ssp. pallidum strains clustered separately as well as the genome of T. paraluiscuniculi strain Cuniculi A. Within coding regions, 6 deletions, 5 insertions and 117 substitutions differentiated Fribourg-Blanc from other TPE genomes. Conclusions/Significance The Fribourg-Blanc genome showed similar genetic characteristics as other TPE strains. Therefore, we propose to rename the unclassified simian isolate to Treponema pallidum ssp. pertenue strain Fribourg-Blanc. Since the Fribourg-Blanc strain was shown to cause experimental infection in human hosts, non-human primates could serve as possible reservoirs of TPE strains. This could considerably complicate recent efforts to eradicate yaws. Genetic differences specific for Fribourg-Blanc could then contribute for identification of cases of animal-derived yaws infections. PMID:23638193

  10. Genome characteristics of a novel phage from Bacillus thuringiensis showing high similarity with phage from Bacillus cereus.

    Directory of Open Access Journals (Sweden)

    Yihui Yuan

    Full Text Available Bacillus thuringiensis is an important entomopathogenic bacterium belongs to the Bacillus cereus group, which also includes B. anthracis and B. cereus. Several genomes of phages originating from this group had been sequenced, but no genome of Siphoviridae phage from B. thuringiensis has been reported. We recently sequenced and analyzed the genome of a novel phage, BtCS33, from a B. thuringiensis strain, subsp. kurstaki CS33, and compared the gneome of this phage to other phages of the B. cereus group. BtCS33 was the first Siphoviridae phage among the sequenced B. thuringiensis phages. It produced small, turbid plaques on bacterial plates and had a narrow host range. BtCS33 possessed a linear, double-stranded DNA genome of 41,992 bp with 57 putative open reading frames (ORFs. It had a typical genome structure consisting of three modules: the "late" region, the "lysogeny-lysis" region and the "early" region. BtCS33 exhibited high similarity with several phages, B. cereus phage Wβ and some variants of Wβ, in genome organization and the amino acid sequences of structural proteins. There were two ORFs, ORF22 and ORF35, in the genome of BtCS33 that were also found in the genomes of B. cereus phage Wβ and may be involved in regulating sporulation of the host cell. Based on these observations and analysis of phylogenetic trees, we deduced that B. thuringiensis phage BtCS33 and B. cereus phage Wβ may have a common distant ancestor.

  11. Genome characteristics of a novel phage from Bacillus thuringiensis showing high similarity with phage from Bacillus cereus.

    Science.gov (United States)

    Yuan, Yihui; Gao, Meiying; Wu, Dandan; Liu, Pengming; Wu, Yan

    2012-01-01

    Bacillus thuringiensis is an important entomopathogenic bacterium belongs to the Bacillus cereus group, which also includes B. anthracis and B. cereus. Several genomes of phages originating from this group had been sequenced, but no genome of Siphoviridae phage from B. thuringiensis has been reported. We recently sequenced and analyzed the genome of a novel phage, BtCS33, from a B. thuringiensis strain, subsp. kurstaki CS33, and compared the gneome of this phage to other phages of the B. cereus group. BtCS33 was the first Siphoviridae phage among the sequenced B. thuringiensis phages. It produced small, turbid plaques on bacterial plates and had a narrow host range. BtCS33 possessed a linear, double-stranded DNA genome of 41,992 bp with 57 putative open reading frames (ORFs). It had a typical genome structure consisting of three modules: the "late" region, the "lysogeny-lysis" region and the "early" region. BtCS33 exhibited high similarity with several phages, B. cereus phage Wβ and some variants of Wβ, in genome organization and the amino acid sequences of structural proteins. There were two ORFs, ORF22 and ORF35, in the genome of BtCS33 that were also found in the genomes of B. cereus phage Wβ and may be involved in regulating sporulation of the host cell. Based on these observations and analysis of phylogenetic trees, we deduced that B. thuringiensis phage BtCS33 and B. cereus phage Wβ may have a common distant ancestor.

  12. Whole genome sequence of the Treponema Fribourg-Blanc: unspecified simian isolate is highly similar to the yaws subspecies.

    Directory of Open Access Journals (Sweden)

    Marie Zobaníková

    Full Text Available BACKGROUND: Unclassified simian strain Treponema Fribourg-Blanc was isolated in 1966 from baboons (Papio cynocephalus in West Africa. This strain was morphologically indistinguishable from T. pallidum ssp. pallidum or ssp. pertenue strains, and it was shown to cause human infections. METHODOLOGY/PRINCIPAL FINDINGS: To precisely define genetic differences between Treponema Fribourg-Blanc (unclassified simian isolate, FB and T. pallidum ssp. pertenue strains (TPE, a high quality sequence of the whole Fribourg-Blanc genome was determined with 454-pyrosequencing and Illumina sequencing platforms. Combined average coverage of both methods was greater than 500×. Restriction target sites (n = 1,773, identified in silico, of selected restriction enzymes within the Fribourg-Blanc genome were verified experimentally and no discrepancies were found. When compared to the other three sequenced TPE genomes (Samoa D, CDC-2, Gauthier, no major genome rearrangements were found. The Fribourg-Blanc genome clustered with other TPE strains (especially with the TPE CDC-2 strain, while T. pallidum ssp. pallidum strains clustered separately as well as the genome of T. paraluiscuniculi strain Cuniculi A. Within coding regions, 6 deletions, 5 insertions and 117 substitutions differentiated Fribourg-Blanc from other TPE genomes. CONCLUSIONS/SIGNIFICANCE: The Fribourg-Blanc genome showed similar genetic characteristics as other TPE strains. Therefore, we propose to rename the unclassified simian isolate to Treponema pallidum ssp. pertenue strain Fribourg-Blanc. Since the Fribourg-Blanc strain was shown to cause experimental infection in human hosts, non-human primates could serve as possible reservoirs of TPE strains. This could considerably complicate recent efforts to eradicate yaws. Genetic differences specific for Fribourg-Blanc could then contribute for identification of cases of animal-derived yaws infections.

  13. Analysis and visualization of citation networks

    CERN Document Server

    Zhao, Dangzhi

    2015-01-01

    Citation analysis-the exploration of reference patterns in the scholarly and scientific literature-has long been applied in a number of social sciences to study research impact, knowledge flows, and knowledge networks. It has important information science applications as well, particularly in knowledge representation and in information retrieval.Recent years have seen a burgeoning interest in citation analysis to help address research, management, or information service issues such as university rankings, research evaluation, or knowledge domain visualization. This renewed and growing interest

  14. Gender Differences in Synchronous and Diachronous Self-citations

    Energy Technology Data Exchange (ETDEWEB)

    Ghiasi, G.; Lariviere, V.; Sugimoto, C.

    2016-07-01

    Citation rates are increasingly used as a currency of science, providing a basis to reward a scientist. Self-citations, an inevitable part of scholarly communication, may contribute to the inflation of citation counts and impose a considerable impact on research evaluation and academic career advancements. Self-citations are classified into two types in this study: synchronous self-citations (self-citations an author gives) and diachronous self-citations (selfcitations an author receives). The main objective of this paper is to provide a comprehensive gendered analysis of synchronous and diachronous self-citations across all scientific disciplines. For this purpose, citation data of 12,725,171 articles published in 2008-2014 are extracted from Web of Science and are further scrutinized for articles of each gender. The findings reveal that men receive citations from their own papers at a higher rate than their women counterparts. They also tend to give more citations to their own publications. Gender gap in citation impact decreases when first-author’s diachronous citations are eliminated in the impact analysis. However, the gap does not vary when all-authors’ diachronous citations are excluded. The results of this research is important for effective gender-related policy-making in the science and technology arena. (Author)

  15. CITATION ANALYSIS OF URBAN PLANNING SCHOLARS IN THE U.S.

    Directory of Open Access Journals (Sweden)

    Sanchez Thomas W

    2015-03-01

    Full Text Available This article provides a complete citation analysis for the field of urban planning in the U.S. Urban planning is multi-disciplinary with a rich tradition of debate about the knowledge domain of both research and practice. Urban planning includes consideration of social, economic, technological, environmental, and political systems that are highly sophisticated, which therefore has an extensive body of scholarship. The article argues that Google Scholar is an appropriate source of citation data for urban planning and includes a brief example of one urban planning scholar to demonstrate GS citation patterns. This is followed by the results of a descriptive analysis showing general patterns of citation activity for urban planning schools. A greater depth of analysis is required to better understand the dynamics of these scholarly activities.

  16. Fibre-specific responses to endurance and low volume high intensity interval training: striking similarities in acute and chronic adaptation.

    Directory of Open Access Journals (Sweden)

    Trisha D Scribbans

    Full Text Available The current study involved the completion of two distinct experiments. Experiment 1 compared fibre specific and whole muscle responses to acute bouts of either low-volume high-intensity interval training (LV-HIT or moderate-intensity continuous endurance exercise (END in a randomized crossover design. Experiment 2 examined the impact of a six-week training intervention (END or LV-HIT; 4 days/week, on whole body and skeletal muscle fibre specific markers of aerobic and anaerobic capacity. Six recreationally active men (Age: 20.7 ± 3.8 yrs; VO2peak: 51.9 ± 5.1 mL/kg/min reported to the lab on two separate occasions for experiment 1. Following a muscle biopsy taken in a fasted state, participants completed an acute bout of each exercise protocol (LV-HIT: 8, 20-second intervals at ∼ 170% of VO2peak separated by 10 seconds of rest; END: 30 minutes at ∼ 65% of VO2peak, immediately followed by a muscle biopsy. Glycogen content of type I and IIA fibres was significantly (p<0.05 reduced, while p-ACC was significantly increased (p<0.05 following both protocols. Nineteen recreationally active males (n = 16 and females (n = 3 were VO2peak-matched and assigned to either the LV-HIT (n = 10; 21 ± 2 yrs or END (n = 9; 20.7 ± 3.8 yrs group for experiment 2. After 6 weeks, both training protocols induced comparable increases in aerobic capacity (END: Pre: 48.3 ± 6.0, Mid: 51.8 ± 6.0, Post: 55.0 ± 6.3 mL/kg/min LV-HIT: Pre: 47.9 ± 8.1, Mid: 50.4 ± 7.4, Post: 54.7 ± 7.6 mL/kg/min, fibre-type specific oxidative and glycolytic capacity, glycogen and IMTG stores, and whole-muscle capillary density. Interestingly, only LV-HIT induced greater improvements in anaerobic performance and estimated whole-muscle glycolytic capacity. These results suggest that 30 minutes of END exercise at ∼ 65% VO2peak or 4 minutes of LV-HIT at ∼ 170% VO2peak induce comparable changes in the intra-myocellular environment (glycogen content and signaling activation

  17. Fibre-specific responses to endurance and low volume high intensity interval training: striking similarities in acute and chronic adaptation.

    Science.gov (United States)

    Scribbans, Trisha D; Edgett, Brittany A; Vorobej, Kira; Mitchell, Andrew S; Joanisse, Sophie D; Matusiak, Jennifer B L; Parise, Gianni; Quadrilatero, Joe; Gurd, Brendon J

    2014-01-01

    The current study involved the completion of two distinct experiments. Experiment 1 compared fibre specific and whole muscle responses to acute bouts of either low-volume high-intensity interval training (LV-HIT) or moderate-intensity continuous endurance exercise (END) in a randomized crossover design. Experiment 2 examined the impact of a six-week training intervention (END or LV-HIT; 4 days/week), on whole body and skeletal muscle fibre specific markers of aerobic and anaerobic capacity. Six recreationally active men (Age: 20.7 ± 3.8 yrs; VO2peak: 51.9 ± 5.1 mL/kg/min) reported to the lab on two separate occasions for experiment 1. Following a muscle biopsy taken in a fasted state, participants completed an acute bout of each exercise protocol (LV-HIT: 8, 20-second intervals at ∼ 170% of VO2peak separated by 10 seconds of rest; END: 30 minutes at ∼ 65% of VO2peak), immediately followed by a muscle biopsy. Glycogen content of type I and IIA fibres was significantly (ptraining protocols induced comparable increases in aerobic capacity (END: Pre: 48.3 ± 6.0, Mid: 51.8 ± 6.0, Post: 55.0 ± 6.3 mL/kg/min LV-HIT: Pre: 47.9 ± 8.1, Mid: 50.4 ± 7.4, Post: 54.7 ± 7.6 mL/kg/min), fibre-type specific oxidative and glycolytic capacity, glycogen and IMTG stores, and whole-muscle capillary density. Interestingly, only LV-HIT induced greater improvements in anaerobic performance and estimated whole-muscle glycolytic capacity. These results suggest that 30 minutes of END exercise at ∼ 65% VO2peak or 4 minutes of LV-HIT at ∼ 170% VO2peak induce comparable changes in the intra-myocellular environment (glycogen content and signaling activation); correspondingly, training-induced adaptations resulting for these protocols, and other HIT and END protocols are strikingly similar.

  18. Self-citation rate and impact factor in the field of plastic and reconstructive surgery.

    Science.gov (United States)

    Miyamoto, Shimpei

    2018-02-01

    Journal ranking based on the impact factor (IF) can be distorted by self-citation. The aim of this study is to investigate the present status of self-citation in the plastic surgery journals and its effect on the journals' IFs. IF, IF without self-citations (corrected IF), self-cited rate, and self-citing rate for 11 plastic surgery journals were investigated from 2009-2015, by reviewing the Journal Citation Report ® . The correlations of the IF with the self-cited rate and the self-citing rate were statistically assessed. In addition, Plastic and Reconstructive Surgery was compared with 15 top journals from other surgical specialties in 2015. IF was significantly correlated with the self-cited rate (R: 0.594, p = 0.001) and the self-citing rate (R: 0.824, p < 0.001). The self-cited rate of Plastic and Reconstructive Surgery in 2015 was higher than that of top journals from other surgical specialties. The IFs of Microsurgery and Journal of Cranio-Maxillo-Facial Surgery increased greatly in recent years, but they were inflated by high self-cited and self-citing rates. The self-citation rate positively affects the IF in plastic surgery journals. A high concentration of self-citation of some journals could distort the ranking among plastic surgery journals in general.

  19. [Citation analysis of research articles from Norwegian health enterprises, 2005-2011].

    Science.gov (United States)

    Piro, Fredrik Niclas; Aksnes, Dag W

    2014-08-19

    The citation frequency of a publication is often interpreted as an expression of its scientific impact. Previous citation analyses of Norwegian medical research have either focused on universities and university hospitals or on subject areas at the national level. Such analyses have paid little attention to other health enterprises, despite a strong increase in their research activity during the last decade. For all health enterprises with more than 25 publications in the Web of Science during the period 2005-2011 we have calculated field normalized citation indexes at the institution and subject levels. On the whole, research undertaken by the health enterprises is frequently cited, and some medium-sized health enterprises stand out in terms of their high average citation indexes: Helse Stavanger Health Enterprise, Diakonhjemmet Hospital and Helse Nord-Trøndelag Health Enterprise, although Oslo University Hospital Health Enterprise and Helse Bergen Health Enterprise account for more than half of the most cited articles. In citation analyses at the aggregated level, highly and infrequently cited research groups/departments may balance each other. This appears to be the case in the largest health enterprises. Some medium-sized health enterprises that have a more concentrated research portfolio will thus accumulate higher average citation indexes than the largest university hospitals.

  20. Exploiting citation contexts for physics retrieval

    DEFF Research Database (Denmark)

    Dabrowska, Anna; Larsen, Birger

    2015-01-01

    The text surrounding citations within scientific papers may contain terms that usefully describe cited documents and can benefit retrieval. We present a preliminary study that investigates appending ci- tation contexts from citing documents to cited documents in the iSearch test collection. We...

  1. Citation of serials and some books

    NARCIS (Netherlands)

    Steenis-Kruseman, van M.J.

    1955-01-01

    The abbreviations used are in general in conformity with common usage in botanical taxonomy, though, where possible, the citation has been limited to the minimum necessary for strict taxonomic reference, e.g.: ‘F.v.M. Fragm.’—for F. VON MUELLER, Fragmenta phytographiae Australiae, ‘Walp. Ann.’—for

  2. Citation: A Library Instruction Computer Game.

    Science.gov (United States)

    Koelewyn, Arie C.; Corby, Katherine

    1982-01-01

    A library instruction computer game created at Newberry College, South Carolina challenges players' skill at using the "Readers' Guide," and by noting elapsed time needed to create a bibliography of citations on a given topic, encourages an increase in skill. Computer equipment used, illustrative examples, and five references are noted.…

  3. Data Citation Concept for CMIP6

    Science.gov (United States)

    Stockhause, M.; Toussaint, F.; Lautenschlager, M.; Lawrence, B.

    2015-12-01

    There is a broad consensus among data centers and scientific publishers on Force 11's 'Joint Declaration of Data Citation Principles'. To put these principles into operation is not always as straight forward. The focus for CMIP6 data citations lies on the citation of data created by others and used in an analysis underlying the article. And for this source data usually no article of the data creators is available ('stand-alone data publication'). The planned data citation granularities are model data (data collections containing all datasets provided for the project by a single model) and experiment data (data collections containing all datasets for a scientific experiment run by a single model). In case of large international projects or activities like CMIP, the data is commonly stored and disseminated by multiple repositories in a federated data infrastructure such as the Earth System Grid Federation (ESGF). The individual repositories are subject to different institutional and national policies. A Data Management Plan (DMP) will define a certain standard for the repositories including data handling procedures. Another aspect of CMIP data, relevant for data citations, is its dynamic nature. For such large data collections, datasets are added, revised and retracted for years, before the data collection becomes stable for a data citation entity including all model or simulation data. Thus, a critical issue for ESGF is data consistency, requiring thorough dataset versioning to enable the identification of the data collection in the cited version. Currently, the ESGF is designed for accessing the latest dataset versions. Data citation introduces the necessity to support older and retracted dataset versions by storing metadata even beyond data availability (data unpublished in ESGF). Apart from ESGF, other infrastructure components exist for CMIP, which provide information that has to be connected to the CMIP6 data, e.g. ES-DOC providing information on models and

  4. Scholars in International Relations Cite Books More Frequently than Journals: More Research is Needed to Better Understand Research Behaviour and Use. A Review of: Zhang, Li. ʺCitation Analysis for Collection Development: A Study of International Relations Journal Literature.ʺ Library Collections, Acquisitions, and Technical Services 31.3‐4 (2007: 195‐207.

    Directory of Open Access Journals (Sweden)

    Megan von Isenburg

    2009-09-01

    Full Text Available Objective – To determine primary type, format, language and subject category of research materials used by U.S. scholars of international relations. Also, to investigate whether research method, qualitative or quantitative, can be correlated with the type and age of sources that scholars use.Design – Citation analysis.Setting – Research articles published in three journals on international relations with high impact factors: International Organization, International Studies Quarterly, and World Politics.Subjects – A random sample of cited references taken from the 410 full‐length research articles published in these journals from 2000 to 2005. Cited references of articles written by authors of foreign institutions (i.e., non‐American institutions, as well as cited references of editorial and research notes, comments, responses, and review essays were excluded.Methods – Cited references were exported from ISI’s Social Science Citation Index (SSCI to MS Excel spreadsheets for analysis. Data was verified against original reference lists. Citations were numbered and identified by source format, place of publication (foreign or domestic, age, and language used, if other than English. The author used a random number generator to select a random sample of 651 from a total of 29,862 citations. Citations were randomly drawn from each journal according to the proportion of the journals’ citations to the total. These citations were analyzed by material type and language. The author also used the Library of Congress Classification Outline to identify the subject category of each book and journal citation in the sample. A separate sampling method was used to investigate if there is a relationship between research methodology and citation behaviour. Each of the original 410 articles was categorized according to research method: quantitative, qualitative or a combination of the two. Two articles representing qualitative research and two

  5. Analysis of the citation of articles published in the European Journal of Emergency Medicine since its foundation.

    Science.gov (United States)

    Fernández-Guerrero, Inés M; Martín-Sánchez, Francisco J; Burillo-Putze, Guillermo; Graham, Collin A; Miró, Òscar

    2017-10-09

    The aim of this study was to evaluate the evolution of the citation of articles from the European Journal of Emergency Medicine (EJEM) from 1994 (EJEM foundation) to 2015 and identify highly cited articles and their principal characteristics and determine a possible correlation between the citations counted in different databases. We obtained the articles published in EJEM from 1994 to 2015 in ISI-WoS (main source) and Scopus, Google Scholar, and Medline databases (accessory sources). The citations were quantified and their annual evolution and the bibliometric indices derived (impact factor and SCImago Journal Rank) were evaluated. We identified and analyzed the highly cited EJEM articles and evaluated the possible correlation between the citations counted for these articles in the databases. Overall, 1705 EJEM articles were cited 9422 times in 8122 different articles. The evolution of the global citation, impact factor, and SCImago Journal Rank from 1994 to 2015 increased significantly. The h-index of EJEM was 30, and 31 articles were considered highly cited (≥30 citations), 16.1% of them being clinical trials. By subjects, 22.5% corresponded to cardiology, 19.3% to emergency department management, and 12.9% to pediatrics; by countries, 81% were from Europe, with Belgian authors publishing four (12.9%) highly cited articles, and French, Spanish, British, and Swedish authors having three (9.7%) each. Two studies in the EJEM achieved the definition of 'citation classics' (more than 100 citations). The number of citations in all the databases, except Medline, showed statistically significant correlations. Citation of EJEM articles has progressively increased and EJEM bibliometric indicators have improved; most highly cited articles are mainly by European authors.

  6. Using incomplete citation data for MEDLINE results ranking.

    Science.gov (United States)

    Herskovic, Jorge R; Bernstam, Elmer V

    2005-01-01

    Information overload is a significant problem for modern medicine. Searching MEDLINE for common topics often retrieves more relevant documents than users can review. Therefore, we must identify documents that are not only relevant, but also important. Our system ranks articles using citation counts and the PageRank algorithm, incorporating data from the Science Citation Index. However, citation data is usually incomplete. Therefore, we explore the relationship between the quantity of citation information available to the system and the quality of the result ranking. Specifically, we test the ability of citation count and PageRank to identify "important articles" as defined by experts from large result sets with decreasing citation information. We found that PageRank performs better than simple citation counts, but both algorithms are surprisingly robust to information loss. We conclude that even an incomplete citation database is likely to be effective for importance ranking.

  7. GPM GROUND VALIDATION UND CITATION NAVIGATION DATA GCPEX V2

    Data.gov (United States)

    National Aeronautics and Space Administration — The GPM Ground Validation UND Citation Navigation Data GCPEx V2 dataset was collected by the Cessna Citation II Research, which was aircraft, owned, and operated by...

  8. GPM Ground Validation UND Citation Navigation Data OLYMPEX V1

    Data.gov (United States)

    National Aeronautics and Space Administration — The GPM Ground Validation UND Citation Navigation Data OLYMPEX dataset supplies navigation data collected by the Cessna Citation II aircraft for flights that...

  9. Analyzing Data Citations to Assess the Scientific and Societal Value of Scientific Data

    Science.gov (United States)

    Chen, R. S.; Downs, R. R.

    2012-12-01

    Stakeholders in the creation, distribution, support, funding, and use of scientific data can benefit by understanding the value that the data have for society and science. For decades, the scientific community has been using citations of articles in the published scientific literature as one of the primary measures used for evaluating the performance of scientists, departments, institutions, and scientific disciplines. Similarly, citations in the published literature of scientific data may be useful for measuring and assessing the value of the scientific data and the performance of the individuals, projects, programs, and organizations that have contributed to the data and their use. The results of citation analysis and other assessments of the value of data also can contribute to planning for future data collection, development, distribution, and preservation efforts. The planned release of new data citation indexes and the more widespread adoption of unique data identifiers and automated attribution mechanisms have the potential to improve significantly the capabilities for analyzing citations of scientific data. In addition, rapid developments in the systems and capabilities for disseminating data, along with education and workforce development on the importance of data attribution and on techniques for data citation, can improve practices for citing scientific data. Such practices need to lead not only to better aggregate statistics about data citation, but also to improved characterization and understanding of the impact of data use in terms of the benefits for science and society. Analyses of citations in the scientific literature were conducted for data that were distributed by an interdisciplinary scientific data center during a five-year period (1997 - 2011), to identify the scientific fields represented by the journals and books in which the data were cited. Secondary citation analysis also was conducted for a sample of scientific publications that used

  10. Cosmology. (Latest Citations from the NTIS Bibliographic Database)

    Science.gov (United States)

    1995-12-01

    The bibliography contains citations concerning theories and explorations into the origin of the universe. Citations focus on various genesis models including perturbation, unified field and string theories. Large scale structure of the universe, galactic evolution, quantum gravity, dark matter, black holes, entropy, Feynman diagrams and multi-dimensional systems represent areas of coverage. The citations include theoretical investigations and astronomical observations. (Contains 50-250 citations and includes a subject term index and title list.)

  11. Patterns of database citation in articles and patents indicate long-term scientific and industry value of biological data resources.

    Science.gov (United States)

    Bousfield, David; McEntyre, Johanna; Velankar, Sameer; Papadatos, George; Bateman, Alex; Cochrane, Guy; Kim, Jee-Hyub; Graef, Florian; Vartak, Vid; Alako, Blaise; Blomberg, Niklas

    2016-01-01

    Data from open access biomolecular data resources, such as the European Nucleotide Archive and the Protein Data Bank are extensively reused within life science research for comparative studies, method development and to derive new scientific insights. Indicators that estimate the extent and utility of such secondary use of research data need to reflect this complex and highly variable data usage. By linking open access scientific literature, via Europe PubMedCentral, to the metadata in biological data resources we separate data citations associated with a deposition statement from citations that capture the subsequent, long-term, reuse of data in academia and industry.  We extend this analysis to begin to investigate citations of biomolecular resources in patent documents. We find citations in more than 8,000 patents from 2014, demonstrating substantial use and an important role for data resources in defining biological concepts in granted patents to both academic and industrial innovators. Combined together our results indicate that the citation patterns in biomedical literature and patents vary, not only due to citation practice but also according to the data resource cited. The results guard against the use of simple metrics such as citation counts and show that indicators of data use must not only take into account citations within the biomedical literature but also include reuse of data in industry and other parts of society by including patents and other scientific and technical documents such as guidelines, reports and grant applications.

  12. Individual, country, and journal self-citation in soil science

    NARCIS (Netherlands)

    Minasny, B.; Hartemink, A.E.; McBratney, A.

    2010-01-01

    Self-citation is common practice in most sciences but it differs between disciplines, countries and journals. Here we report on self-citation in soil science. We investigated citations in the major soil science journals and conducted an analysis on a country basis and for the subdiscipline of

  13. Observations on Citation Practices in Mathematics Education Research. Research Commentary

    Science.gov (United States)

    Leatham, Keith R.

    2015-01-01

    The author argues that the field of mathematics education as a whole can and should improve its citation practices. He discusses 4 forms of citation practice and considers how they vary with respect to transparency of voice. He also discusses several ways that citation practices may misrepresent cited authors' ideas. He concludes with suggestions…

  14. Ranking Economics and Econometrics ISI Journals by Quality Weighted Citations

    NARCIS (Netherlands)

    C-L. Chang (Chia-Lin); M.J. McAleer (Michael)

    2014-01-01

    markdownabstract__Abstract__ The paper analyses academic journal quality and impact using quality weighted citations that are based on the widely-used Thomson Reuters ISI Web of Science citations database (ISI). A recently developed Index of Citations Quality (ICQ), based on quality weighted

  15. Rankings and Trends in Citation Patterns of Communication Journals

    Science.gov (United States)

    Levine, Timothy R.

    2010-01-01

    Journal citations are increasingly used as indicators of the impact of scholarly work. Because many communication journals are not included in the Social Science Citation Index (SSCI), SSCI impact factors are potentially misleading for communication journals. The current paper reports a citation analysis of 30 communication journals based on…

  16. 32 CFR 935.125 - Citation in place of arrest.

    Science.gov (United States)

    2010-07-01

    ... 32 National Defense 6 2010-07-01 2010-07-01 false Citation in place of arrest. 935.125 Section 935... INSULAR REGULATIONS WAKE ISLAND CODE Peace Officers § 935.125 Citation in place of arrest. In any case in which a peace officer may make an arrest without a warrant, he may issue and serve a citation if he...

  17. 1 CFR 5.8 - Form of citation.

    Science.gov (United States)

    2010-01-01

    ... 1 General Provisions 1 2010-01-01 2010-01-01 false Form of citation. 5.8 Section 5.8 General Provisions ADMINISTRATIVE COMMITTEE OF THE FEDERAL REGISTER THE FEDERAL REGISTER GENERAL § 5.8 Form of citation. Without prejudice to any other form of citation, Federal Register material may be cited by volume...

  18. 37 CFR 41.12 - Citation of authority.

    Science.gov (United States)

    2010-07-01

    ... 37 Patents, Trademarks, and Copyrights 1 2010-07-01 2010-07-01 false Citation of authority. 41.12... COMMERCE PRACTICE BEFORE THE BOARD OF PATENT APPEALS AND INTERFERENCES General Provisions § 41.12 Citation.... (a) Citations to authority must include: (1) For any United States Supreme Court decision, a United...

  19. 36 CFR 1150.48 - PER: Citation, answer, amendment.

    Science.gov (United States)

    2010-07-01

    ... 36 Parks, Forests, and Public Property 3 2010-07-01 2010-07-01 false PER: Citation, answer...; Pleadings and Motions § 1150.48 PER: Citation, answer, amendment. (a) Unless otherwise specified, other..., the citation shall request PER when it appears to the Executive Director that immediate and...

  20. 47 CFR 1.14 - Citation of Commission documents.

    Science.gov (United States)

    2010-10-01

    ... 47 Telecommunication 1 2010-10-01 2010-10-01 false Citation of Commission documents. 1.14 Section... Rules of Practice and Procedure General § 1.14 Citation of Commission documents. The appropriate reference to the FCC Record shall be included as part of the citation to any document that has been printed...

  1. Unraveling Scientific Impact : Citation Types in Marketing Journals

    NARCIS (Netherlands)

    S. Stremersch (Stefan); N.M.A. Camacho (Nuno); S. Vanneste (Sofie); I.W.J. Verniers (Isabel)

    2014-01-01

    textabstractThe number of citations a paper receives is the most commonly used measure of scientific impact. In this paper, we study not only the number but also the type of citations that 659 marketing articles generated. We discern five citation types: application, affirmation, negation, review

  2. Local Citation Analysis of Graduate Biology Theses: Collection Development Implications

    Science.gov (United States)

    Miller, Laura Newton

    2011-01-01

    This paper will focus on the citation analysis of graduate masters theses from Carleton University's Biology Department with implications for library collection management decisions. Twenty-five masters theses were studied to determine citation types and percentages, ranking of journals by frequency of citation and by number of authors citing, and…

  3. Predicting the long-term citation impact of recent publications

    NARCIS (Netherlands)

    Stegehuis, Clara; Litvak, Nelli; Waltman, Ludo

    2015-01-01

    A fundamental problem in citation analysis is the prediction of the long-term citation impact of recent publications. We propose a model to predict a probability distribution for the future number of citations of a publication. Two predictors are used: The impact factor of the journal in which a

  4. A Ten Year Citation Analysis of Major Australian Research Institutions

    Science.gov (United States)

    Batterham, Robin J.

    2011-01-01

    The introduction of the Excellence in Research for Australia scheme has heightened debate amongst research institutions over the use of metrics such as citations, especially given the ready availability of citation data. An analysis is presented of the citation performance of nine Australian universities and the Commonwealth Scientific, Industrial…

  5. Predicting the long-term citation impact of recent publications

    NARCIS (Netherlands)

    Stegehuis, Clara; Litvak, Nelli; Waltman, Ludo

    A fundamental problem in citation analysis is the prediction of the long-term citation impact of recent publications. We propose a model to predict a probability distribution for the future number of citations of a publication. Two predictors are used: the impact factor of the journal in which a

  6. Revistas Iberoamericanas de Educación en SciELO Citation Index y Emerging Source Citation Index

    National Research Council Canada - National Science Library

    Rafael Repiso; Evaristo Jiménez-Contreras; Ignacio Aguaded

    2017-01-01

    El presente trabajo es un análisis de las revistas de Educación iberoamericanas en SciELO Citation Index y Emerging Source Citation Index, dos de los nuevos productos incorporados a Web of Science...

  7. Production and citation of cochrane systematic reviews: a bibliometrics analysis.

    Science.gov (United States)

    Shen, Jiantong; Li, Youping; Clarke, Mike; Du, Liang; Wang, Li; Zhong, Dake

    2014-05-06

    To evaluate the production and utilization of Cochrane systematic reviews(CSRs) and to analyze its influential factors, so as to improve the capacity of translating CSRs into practice. All CSRs and protocols were retrieved from the Cochrane Library ISSUE 2, 2011 and citation data were retrieved from SCI database. Citation analysis was used to analyze the situation of CSRs production and utilization. CSR publication had grown from an annual average of 32 to 718 documents. Only one developing country was among the ten countries with the largest amount of publications. High income countries accounted for 83% of CSR publications and 90.8% of cited counts. 34.7% of CSRs had a cited count of 0, while only 0.9% had been cited more than 50 times. Highly cited CSRs were published in England, Australia, Canada, USA and other high income countries. The countries with a Cochrane center or a Cochrane methodology group had a greater capability of CSRs production and citing than others. The CSRs addressing the topics of diseases were more than those targeted at public health issues. There was a big gap in citations of different interventions even for the same topic. The capability of CSR production and translation grew rapidly, but varied among countries and institutions, which was affected by several factors such as the capability of research, the resourcesand the applicability of the evidence. It is important to improve evidence translation through educating, training and prioritizing the problems based on real demands of end user. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

  8. Geographic trends of scientific output and citation practices in psychiatry.

    Science.gov (United States)

    Igoumenou, Artemis; Ebmeier, Klaus; Roberts, Nia; Fazel, Seena

    2014-12-06

    Measures of research productivity are increasingly used to determine how research should be evaluated and funding decisions made. In psychiatry, citation patterns within and between countries are not known, and whether these differ by choice of citation metric. In this study, we examined publication characteristics and citation practices in articles published in 50 Web of Science indexed psychiatric and relevant clinical neurosciences journals, between January 2004 and December 2009 comprising 51,072 records that produced 375,962 citations. We compared citation patterns, including self-citations, between countries using standard x(2) tests. We found that most publications came from the USA, with Germany being second and UK third in productivity. USA articles received most citations and the highest citation rate with an average 11.5 citations per article. The UK received the second highest absolute number of citations, but came fourth by citation rate (9.7 citations/article), after the Netherlands (11.4 citations/article) and Canada (9.8 citations/article). Within the USA, Harvard University published most articles and these articles were the most cited, on average 20.0 citations per paper. In Europe, UK institutions published and were cited most often. The Institute of Psychiatry/Kings College London was the leading institution in terms of number of published records and overall citations, while Oxford University had the highest citation rate (18.5 citations/record). There were no differences between the self-citation practices of American and European researchers. Articles that examined some aspect of treatment in psychiatry were the most published. In terms of diagnosis, papers about schizophrenia-spectrum disorders were the most published and the most cited. We found large differences between and within countries in terms of their research productivity in psychiatry and clinical neuroscience. In addition, the ranking of countries and institutions differed widely

  9. Similar changes in muscle lipid metabolism are induced by chronic high-fructose feeding and high-fat feeding in C57BL/J6 mice.

    Science.gov (United States)

    Song, Guang-Yao; Ren, Lu-Ping; Chen, Shu-Chun; Wang, Chao; Liu, Na; Wei, Li-Min; Li, Fan; Sun, Wen; Peng, Lan-Bo; Tang, Yong

    2012-12-01

    The aim of the present study was to investigate the effects of high fructose and high fat feeding on muscle lipid metabolism and to illustrate the mechanisms by which the two different dietary factors induce muscle lipid accumulation. C57BL/J6 mice were fed either a standard, high-fructose (HFru) or high-fat diet. After 16 weeks feeding, mice were killed and plasma triglyceride (TG) and free fatty acid (FFA) levels were detected. In addition, muscle TG and long chain acyl CoA (LCACoA) content was determined, glucose tolerance was evaluated and the protein content of fatty acid translocase CD36 (FATCD36) in muscle was measured. Mitochondrial oxidative function in the muscle was evaluated by estimating the activity of oxidative enzymes, namely cytochrome oxidase (COx), citrate synthase (CS) and β-hydroxyacyl CoA dehydrogenase (β-HAD), and the muscle protein content of carnitine palmitoyltransferase-1 (CPT-1), cyclo-oxygenase (COX)-1 and proliferator-activated receptor coactivator (PGC)-1α was determined. Finally, sterol regulatory element-binding protein-1c (SREBP-1c) gene expression and fatty acid synthase (FAS) protein content were determined in muscle tissues. After 16 weeks, plasma TG and FFA levels were significantly increased in both the HFru and HF groups. In addition, mice in both groups exhibited significant increases in muscle TG and LCACoA content. Compared with mice fed the standard diet (control group), those in the HFru and HF groups developed glucose intolerance and exhibited increased FATCD36 protein levels, enzyme activity related to fatty acid utilization in the mitochondria and protein expressions of CPT-1, COX-1 and PGC-1α in muscle tissue. Finally, mice in both the HFru and HF groups exhibited increase SREBP-1c expression and FAS protein content. In conclusion, high fructose and high fat feeding lead to similar changes in muscle lipid metabolism in C57BL/J6 mice. Lipid accumulation in the muscle may be associated with increased expression

  10. Geopressured geothermal bibliography. Volume 1 (citation extracts)

    Energy Technology Data Exchange (ETDEWEB)

    Hill, T.R.; Sepehrnoori, K.

    1981-08-01

    This bibliography was compiled by the Center for Energy Studies at The University of Texas at Austin to serve as a tool for researchers in the field of geopressured geothermal energy resources. The bibliography represents citations of papers on geopressured geothermal energy resources over the past eighteen years. Topics covered in the bibliography range from the technical aspects of geopressured geothermal reservoirs to social, environmental, and legal aspects of tapping those reservoirs for their energy resources. The bibliography currently contains more than 750 entries. For quick reference to a given topic, the citations are indexed into five divisions: author, category, conference title, descriptor, and sponsor. These indexes are arranged alphabetically and cross-referenced by page number.

  11. Citation classics in periodontology: a controlled study.

    Science.gov (United States)

    Nieri, Michele; Saletta, Daniele; Guidi, Luisa; Buti, Jacopo; Franceschi, Debora; Mauro, Saverio; Pini-Prato, Giovanpaolo

    2007-04-01

    The aims of this study were to identify the most cited articles in Periodontology published from January 1990 to March 2005; and to analyse the differences between citation Classics and less cited articles. The search was carried out in four international periodontal journals: Journal of Periodontology, Journal of Clinical Periodontology, International Journal of Periodontics and Restorative Dentistry and Journal of Periodontal Research. The Classics, that are articles cited at least 100 times, were identified using the Science Citation Index database. From every issue of the journals that contained a Classic, another article was randomly selected and used as a Control. Fifty-five Classics and 55 Controls were identified. Classic articles were longer, used more images, had more authors, and contained more self-references than Controls. Moreover Classics had on the average a bigger sample size, often dealt with etiopathogenesis and prognosis, but were rarely controlled or randomized studies. Classic articles play an instructive role, but are often non-Controlled studies.

  12. Citation Patterns of Engineering, Statistics, and Computer Science Researchers: An Internal and External Citation Analysis across Multiple Engineering Subfields

    Science.gov (United States)

    Kelly, Madeline

    2015-01-01

    This study takes a multidimensional approach to citation analysis, examining citations in multiple subfields of engineering, from both scholarly journals and doctoral dissertations. The three major goals of the study are to determine whether there are differences between citations drawn from dissertations and those drawn from journal articles; to…

  13. "'Jackin’ for Beats'": DJing for Citation Critique

    Directory of Open Access Journals (Sweden)

    Todd Craig

    2013-10-01

    Full Text Available A challenge in teaching English composition is helping students envision plagiarism as “borrowing” – showing love to author(s and/or text(s that further their argument(s, versus “stealing” – biting someone’s style and words. Alastair Pennycook (1996 and Sarah Wakefield (2006 have contributed pieces to the elaborate plagiarism/citation puzzle, while Houston Baker situated the hip-hop DJ in seminal text Black Studies, Rap and the Academy (1993. Merging these moments introduces critical questions: Did Diddy invent “the remix” or become the illest beat-biter ever? How did DJ/Producers Pete Rock and Large Professor pay homage to previous musical genres to further hip-hop remix production without just taking 4-8 bar samples, copying sources and claiming unethical ownership? And how can this discussion provide students a window into citation conversations? This article will remix these “texts” to introduce the idea of DJ Rhetoric to discuss plagiarism. Through the lens of the hip-hop DJ in writing classrooms, one can foster an appreciation of the difference between “love and theft” in student citation. This article will couple examples from hip-hop music/culture while simultaneously remixing interviews from various hip-hop DJ/producers to help answer these difficult questions.

  14. Psychiatry and the Hirsch h-index: The relationship between journal impact factors and accrued citations.

    Science.gov (United States)

    Hunt, Glenn E; Cleary, Michelle; Walter, Garry

    2010-01-01

    There is considerable debate on the use and abuse of journal impact factors and on selecting the most appropriate indicator to assess research outcome for an individual or group of scientists. Internet searches using Web of Science and Scopus were conducted to retrieve citation data for an individual in order to calculate nine variants of Hirsch's h-index. Citations to articles published in a wide range of psychiatric journals in the periods 1995-99 and 2000-05 were analyzed using Web of Science. Comparisons were made between journal impact factor, h-index of citations from publication to 2008, and the proportion of articles cited at least 30 or 50 times. For up to 14 years post-publication, there was a strong positive relationship between journal impact factor and h-index for citations received. Journal impact factor was also compared to the percentage of articles cited at least 30 or 50 times-a comparison that showed wide variations between journals with similar impact factors. This study found that 40%-50% of the articles published in the top ten psychiatry journals ranked by impact factor acquire 30 to 50 citations within ten to fifteen years. Despite certain flaws and weaknesses, the h-index provides a better way to assess long-term performance of articles or authors than using a journal's impact factor, and it provides an alternative way to assess a journal's long-term ranking.

  15. Towards a simple mathematical theory of citation distributions.

    Science.gov (United States)

    Katchanov, Yurij L

    2015-01-01

    The paper is written with the assumption that the purpose of a mathematical theory of citation is to explain bibliometric regularities at the level of mathematical formalism. A mathematical formalism is proposed for the appearance of power law distributions in social citation systems. The principal contributions of this paper are an axiomatic characterization of citation distributions in terms of the Ekeland variational principle and a mathematical exploration of the power law nature of citation distributions. Apart from its inherent value in providing a better understanding of the mathematical underpinnings of bibliometric models, such an approach can be used to derive a citation distribution from first principles.

  16. Bibliometric analysis of factors predicting increased citations in the vascular and endovascular literature.

    Science.gov (United States)

    Antoniou, George A; Antoniou, Stavros A; Georgakarakos, Efstratios I; Sfyroeras, George S; Georgiadis, George S

    2015-02-01

    Dissemination of research findings in the scientific community is reflected by the citation count. Our objective was to investigate the relative citation impact of vascular research studies and identify potential predictors of increased citation rates. Articles published in leading journals of vascular and general surgery (Journal of Vascular Surgery, European Journal of Vascular and Endovascular Surgery, Journal of Endovascular Therapy, Annals of Vascular Surgery and Annals of Surgery, British Journal of Surgery, Journal of the American College of Surgeons, and JAMA Surgery) during a 4-month period were identified through electronic databases. Variables potentially associated with increased citation rates, including subject, design, title characteristics, article length, bibliographic references, authorship, geographic distribution, interdisciplinary collaboration, article access, and funding, were assessed in univariate and multiple linear regression models through December 2012. A total of 226 articles with a total number of 4,605 citations were identified. Univariate analysis revealed that endovascular-related studies, study design, studies reporting design in the title, long articles, and studies with high number of references were associated with higher citation rates. On multivariate analysis, 3 variables were found to independently predict the number of citations: study subject (endovascular-related studies; regression coefficient [95% confidence interval], 0.474 [0.240-0.708]; P < 0.001); study design (randomized controlled trial; regression coefficient [95% confidence interval], 0.575 [0.145-1.005]; P = 0.009); and article length (number of pages; regression coefficient [95% confidence interval], 0.069 [0.016-0.123]; P = 0.011). Authors involved in vascular research may enhance the impact of their work by embarking on research strategies of high methodologic quality and pursuing work related with new technologies and evolving endovascular therapies

  17. The proximal first exon architecture of the murine ghrelin gene is highly similar to its human orthologue

    Directory of Open Access Journals (Sweden)

    Seim Inge

    2009-05-01

    Full Text Available Abstract Background The murine ghrelin gene (Ghrl, originally sequenced from stomach tissue, contains five exons and a single transcription start site in a short, 19 bp first exon (exon 0. We recently isolated several novel first exons of the human ghrelin gene and found evidence of a complex transcriptional repertoire. In this report, we examined the 5' exons of the murine ghrelin orthologue in a range of tissues using 5' RACE. Findings 5' RACE revealed two transcription start sites (TSSs in exon 0 and four TSSs in intron 0, which correspond to 5' extensions of exon 1. Using quantitative, real-time RT-PCR (qRT-PCR, we demonstrated that extended exon 1 containing Ghrl transcripts are largely confined to the spleen, adrenal gland, stomach, and skin. Conclusion We demonstrate that multiple transcription start sites are present in exon 0 and an extended exon 1 of the murine ghrelin gene, similar to the proximal first exon organisation of its human orthologue. The identification of several transcription start sites in intron 0 of mouse ghrelin (resulting in an extension of exon 1 raises the possibility that developmental-, cell- and tissue-specific Ghrl mRNA species are created by employing alternative promoters and further studies of the murine ghrelin gene are warranted.

  18. A small world of citations? The influence of collaboration networks on citation practices.

    Directory of Open Access Journals (Sweden)

    Matthew L Wallace

    Full Text Available This paper examines the proximity of authors to those they cite using degrees of separation in a co-author network, essentially using collaboration networks to expand on the notion of self-citations. While the proportion of direct self-citations (including co-authors of both citing and cited papers is relatively constant in time and across specialties in the natural sciences (10% of references and the social sciences (20%, the same cannot be said for citations to authors who are members of the co-author network. Differences between fields and trends over time lie not only in the degree of co-authorship which defines the large-scale topology of the collaboration network, but also in the referencing practices within a given discipline, computed by defining a propensity to cite at a given distance within the collaboration network. Overall, there is little tendency to cite those nearby in the collaboration network, excluding direct self-citations. These results are interpreted in terms of small-scale structure, field-specific citation practices, and the value of local co-author networks for the production of knowledge and for the accumulation of symbolic capital. Given the various levels of integration between co-authors, our findings shed light on the question of the availability of 'arm's length' expert reviewers of grant applications and manuscripts.

  19. Patterns of citations of open access and non-open access conservation biology journal papers and book chapters.

    Science.gov (United States)

    Calver, Michael C; Bradley, J Stuart

    2010-06-01

    Open access (OA) publishing, whereby authors, their institutions, or their granting bodies pay or provide a repository through which peer-reviewed work is available online for free, is championed as a model to increase the number of citations per paper and disseminate results widely, especially to researchers in developing countries. We compared the number of citations of OA and non-OA papers in six journals and four books published since 2000 to test whether OA increases number of citations overall and increases citations made by authors in developing countries. After controlling for type of paper (e.g., review or research paper), length of paper, authors' citation profiles, number of authors per paper, and whether the author or the publisher released the paper in OA, OA had no statistically significant influence on the overall number of citations per journal paper. Journal papers were cited more frequently if the authors had published highly cited papers previously, were members of large teams of authors, or published relatively long papers, but papers were not cited more frequently if they were published in an OA source. Nevertheless, author-archived OA book chapters accrued up to eight times more citations than chapters in the same book that were not available through OA, perhaps because there is no online abstracting service for book chapters. There was also little evidence that journal papers or book chapters published in OA received more citations from authors in developing countries relative to those journal papers or book chapters not published in OA. For scholarly publications in conservation biology, only book chapters had an OA citation advantage, and OA did not increase the number of citations papers or chapters received from authors in developing countries.

  20. On the evolution and utility of annual citation indices

    CERN Document Server

    Khaleque, Abdul; Sen, Parongama

    2014-01-01

    We study the statistics of citations made to the top ranked indexed journals for Science and Social Science databases in the Journal Citation Reports using different measures. Total annual citation and impact factor, as well as a third measure called the annual citation rate are used to make the detailed analysis. We observe that the distribution of the annual citation rate has an universal feature - it shows a maximum at the rate scaled by half the average, irrespective of how the journals are ranked, and even across Science and Social Science journals, and fits well to log-Gumbel distribution. Correlations between different quantities are studied and a comparative analysis of the three measures is presented. The newly introduced annual citation rate factor helps in understanding the effect of scaling the number of citation by the total number of publications. The effect of the impact factor on authors contributing to the journals as well as on editorial policies is also discussed.

  1. Citation patterns and trends of systematic reviews about mindfulness.

    Science.gov (United States)

    Chiesa, Alberto; Fazia, Teresa; Bernardinelli, Luisa; Morandi, Gabriella

    2017-08-01

    We performed a citation analysis of the literature about mindfulness aimed at describing the most significant topics and the impact of more relevant papers. We classified 128 systematic reviews about mindfulness-based intervention retrieved in Scopus according to their object, the population included and the type of mindfulness proposed. The citation counting was reported. The cumulative citation numbers per chronological years and article life were analyzed thorough a linear regression model. 1) We observed a general increase in the number of reviews published from 2003 to 2016; 2) two reviews collected the 33% of the overall citations; 3) citation counting for clinical and mixed population collected the 90% of total citations; 4) clinical reviews had higher cumulative citation per publication/year growth. As mindfulness research advances, higher attention should be given to the mechanisms by which mindfulness interventions work so as to provide fruitful insights for future research. Copyright © 2017 Elsevier Ltd. All rights reserved.

  2. A citation-analysis of economic research institutes.

    Science.gov (United States)

    Ketzler, Rolf; Zimmermann, Klaus F

    2013-06-01

    The citation analysis of the research output of the German economic research institutes presented here is based on publications in peer-reviewed journals listed in the Social Science Citation Index for the 2000-2009 period. The novel feature of the paper is that a count data model quantifies the determinants of citation success and simulates their citation potential. Among the determinants of the number of cites the quality of the publication outlet exhibits a strong positive effect. The same effect has the number of the published pages, but journals with size limits also yield more cites. Field journals get less citations in comparison to general journals. Controlling for journal quality, the number of co-authors of a paper has no effect, but it is positive when co-authors are located outside the own institution. We find that the potential citations predicted by our best model lead to different rankings across the institutes than current citations indicating structural change.

  3. Different responses of Caco-2 and MCF-7 cells to silver nanoparticles are based on highly similar mechanisms of action.

    Science.gov (United States)

    van der Zande, Meike; Undas, Anna K; Kramer, Evelien; Monopoli, Marco P; Peters, Ruud J; Garry, David; Antunes Fernandes, Elsa C; Hendriksen, Peter J; Marvin, Hans J P; Peijnenburg, Ad A; Bouwmeester, Hans

    2016-12-01

    The mode of action of silver nanoparticles (AgNPs) is suggested to be exerted through both Ag+ and AgNP dependent mechanisms. Ingestion is one of the major NP exposure routes, and potential effects are often studied using Caco-2 cells, a well-established model for the gut epithelium. MCF-7 cells are epithelial breast cancer cells with extensive well-characterized toxicogenomics profiles. In the present study, we aimed to gain a deeper understanding of the cellular molecular responses in Caco-2 and MCF-7 cells after AgNP exposure in order to evaluate whether epithelial cells derived from different tissues demonstrated similar responses. These insights could possibly reduce the size of cell panels for NP hazard identification screening purposes. AgNPs of 20, 30, 60, and 110 nm, and AgNO3 were exposed for 6 h and 24 h. AgNPs were shown to be taken up and dissolve intracellularly. Compared with MCF-7 cells, Caco-2 cells showed a higher sensitivity to AgNPs, slower gene expression kinetics and absence of NP size-dependent responses. However, on a molecular level, no significant differences were observed between the two cell types. Transcriptomic analysis showed that Ag(NP) exposure caused (oxidative) stress responses, possibly leading to cell death in both cell lines. There was no indication for effects specifically induced by AgNPs. Responses to AgNPs appeared to be induced by silver ions released from the AgNPs. In conclusion, differences in mRNA responses to AgNPs between Caco-2 and MCF-7 cells were mainly related to timing and magnitude, but not to a different underlying mechanism.

  4. Rocky mountain spotted fever characterization and comparison to similar illnesses in a highly endemic area-Arizona, 2002-2011.

    Science.gov (United States)

    Traeger, Marc S; Regan, Joanna J; Humpherys, Dwight; Mahoney, Dianna L; Martinez, Michelle; Emerson, Ginny L; Tack, Danielle M; Geissler, Aimee; Yasmin, Seema; Lawson, Regina; Hamilton, Charlene; Williams, Velda; Levy, Craig; Komatsu, Kenneth; McQuiston, Jennifer H; Yost, David A

    2015-06-01

    Rocky Mountain spotted fever (RMSF) has emerged as a significant cause of morbidity and mortality since 2002 on tribal lands in Arizona. The explosive nature of this outbreak and the recognition of an unexpected tick vector, Rhipicephalus sanguineus, prompted an investigation to characterize RMSF in this unique setting and compare RMSF cases to similar illnesses. We compared medical records of 205 patients with RMSF and 175 with non-RMSF illnesses that prompted RMSF testing during 2002-2011 from 2 Indian reservations in Arizona. RMSF cases in Arizona occurred year-round and peaked later (July-September) than RMSF cases reported from other US regions. Cases were younger (median age, 11 years) and reported fever and rash less frequently, compared to cases from other US regions. Fever was present in 81% of cases but not significantly different from that in patients with non-RMSF illnesses. Classic laboratory abnormalities such as low sodium and platelet counts had small and subtle differences between cases and patients with non-RMSF illnesses. Imaging studies reflected the variability and complexity of the illness but proved unhelpful in clarifying the early diagnosis. RMSF epidemiology in this region appears different than RMSF elsewhere in the United States. No specific pattern of signs, symptoms, or laboratory findings occurred with enough frequency to consistently differentiate RMSF from other illnesses. Due to the nonspecific and variable nature of RMSF presentations, clinicians in this region should aggressively treat febrile illnesses and sepsis with doxycycline for suspected RMSF. Published by Oxford University Press on behalf of the Infectious Diseases Society of America 2015. This work is written by (a) US Government employee(s) and is in the public domain in the US.

  5. External and Internal Citation Analyses Can Provide Insight into Serial/Monograph Ratios when Refining Collection Development Strategies in Selected STEM Disciplines

    Directory of Open Access Journals (Sweden)

    Stephanie Krueger

    2016-12-01

    Full Text Available A Review of: Kelly, M. (2015. Citation patterns of engineering, statistics, and computer science researchers: An internal and external citation analysis across multiple engineering subfields. College and Research Libraries, 76(7, 859-882. http://doi.org/10.5860/crl.76.7.859 Objective – To determine internal and external citation analysis methods and their potential applicability to the refinement of collection development strategies at both the institutional and cross-institutional levels for selected science, technology, engineering, and mathematics (STEM subfields. Design – Multidimensional citation analysis; specifically, analysis of citations from 1 key scholarly journals in selected STEM subfields (external analysis compared to those from 2 local doctoral dissertations in similar subfields (internal analysis. Setting – Medium-sized, STEM-dominant public research university in the United States of America. Subjects – Two citation datasets: 1 14,149 external citations from16 journals (i.e., 2 journals per subfield; citations from 2012 volumes representing bioengineering, civil engineering, computer science (CS, electrical engineering, environmental engineering, operations research, statistics (STAT, and systems engineering; and 2 8,494 internal citations from 99 doctoral dissertations (18-22 per subfield published between 2008-–2012 from CS, electrical and computer engineering (ECE, and applied information technology (AIT and published between 2005-–2012 for systems engineering and operations research (SEOR and STAT. Methods – Citations, including titles and publication dates, were harvested from source materials and stored in Excel and then manually categorized according to format (book, book chapter, journal, conference proceeding, website, and several others. To analyze citations, percentages of occurrence by subfield were calculated for variables including format, age (years since date cited, journal distribution, and the

  6. Islamic World Science Citation Center (ISC): Evaluating Scholary Journals Based on Citation Analysis.

    Science.gov (United States)

    Mehrad, Jaffar; Arastoopoor, Sholeh

    2012-03-01

    Citation analysis is currently one of the most widely used metrics for analyzing the scientific contribution in different fields. The Islamic World Science Citation Center (ISC) aims at promoting technical cooperation among Muslim scientists and their respected centers based on these theories. It also facilitates the accessibility of knowledge and research contribution among them. This paper aims at revealing some of the outmost features of ISC databases, in order to give a fairly clear view of what it is and what are its products. The paper consists of three major parts. After an introduction about the Islamic World Science Citation Center, the paper deals with major tools and products of ISC. In the third part ISCs' journal Submission system is presented as an automatic means, by which users can upload journals' papers into the respected databases. Some complementary remarks have been made regarding the current state of ISC and its future plans.

  7. Multicriteria decision-making method based on a cosine similarity ...

    African Journals Online (AJOL)

    the cosine similarity measure is often used in information retrieval, citation analysis, and automatic classification. However, it scarcely deals with trapezoidal fuzzy information and multicriteria decision-making problems. For this purpose, a cosine similarity measure between trapezoidal fuzzy numbers is proposed based on ...

  8. Array comparative hybridisation reveals a high degree of similarity between UK and European clinical isolates of hypervirulent Clostridium difficile

    Directory of Open Access Journals (Sweden)

    Kuijper Ed J

    2010-06-01

    Full Text Available Abstract Background Clostridium difficile is a Gram-positive, anaerobic, spore-forming bacterium that is responsible for C. difficile associated disease in humans and is currently the most common cause of nosocomial diarrhoea in the western world. This current status has been linked to the emergence of a highly virulent PCR-ribotype 027 strain. The aim of this work was to identify regions of sequence divergence that may be used as genetic markers of hypervirulent PCR-ribotype 027 strains and markers of the sequenced strain, CD630 by array comparative hybridisation. Results In this study, we examined 94 clinical strains of the most common PCR-ribotypes isolated in mainland Europe and the UK by array comparative genomic hybridisation. Our array was comprehensive with 40,097 oligonucleotides covering the C. difficile 630 genome and revealed a core genome for all the strains of 32%. The array also covered genes unique to two PCR-ribotype 027 strains, relative to C. difficile 630 which were represented by 681 probes. All of these genes were also found in the commonly occuring PCR-ribotypes 001 and 106, and the emerging hypervirulent PCR-ribotype 078 strains, indicating that these are markers for all highly virulent strains. Conclusions We have fulfilled the aims of this study by identifying markers for CD630 and markers associated with hypervirulence, albeit genes that are not just indicative of PCR-ribotype 027 strains. We have also extended this study and have defined a more stringent core gene set compared to those previously published due to the comprehensive array coverage. Further to this we have defined a list of genes absent from non-toxinogenic strains and defined the nature of the specific toxin deletion in the strain CD37.

  9. Are Shorter Article Titles More Attractive for Citations? Cross-sectional Study of 22 Scientific Journals

    Science.gov (United States)

    Habibzadeh, Farrokh; Yadollahie, Mahboobeh

    2010-01-01

    Aim To investigate the correlation between the length of the title of a scientific article and the number of citations it receives, in view of the common editorial call for shorter titles. Methods Title and the number of citations to all articles published in 2005 in 22 arbitrarily chosen English-language journals (n = 9031) were retrieved from citation database Scopus. The 2008 journal impact factors of these 22 journals were also retrieved from Thomson Reuters’ Journal Citation Report (JCR). Assuming the article title length as the independent variable, and the number of citations to the article as the dependent variable, a linear regression model was applied. Results The slope of the regression line for some journals (n = 6, when titles were measured in characters but 7 when titles were measured in words) was negative – none was significantly different from 0. The overall slope for all journals was 0.140 (when titles were measured in characters) and 0.778 (when titles were measured in words), significantly different from 0 (P articles with longer titles received more citations – Spearman ρ = 0.266 – when titles were measured in characters, and ρ = 0.244 when titles were measured in words (P 10 and for 2 out of 14 journals with impact factor <10 (P < 0.001, Fisher exact test). Conclusion Longer titles seem to be associated with higher citation rates. This association is more pronounced for journals with high impact factors. Editors who insist on brief and concise titles should perhaps update the guidelines for authors of their journals and have more flexibility regarding the length of the title. PMID:20401960

  10. Plenary presentations and public citations from The American Association for Thoracic Surgery.

    Science.gov (United States)

    Kamel, Mohamed; Terasaki, Yusuke; Adusumilli, Prasad S; Stiles, Brendon M

    2016-01-01

    We examined the impact of work presented in the plenary sessions at the meeting of The American Association for Thoracic Surgery (AATS), by determining how frequently the published papers corresponding to the session presentations during the past 20 years, were cited; those that were most cited were identified. We reviewed the AATS meeting programs from the 20-year period from 1994 to 2014 and identified the corresponding publications in the Journal of Thoracic and Cardiovascular Surgery (JTCVS) from all abstracts presented at the plenary sessions. Papers were categorized as cardiac, thoracic, or congenital. References were evaluated for subsequent citation in the Web of Science (WoS), and Google Scholar (GS). We determined both the median number of citations overall, and per year. For comparison, we evaluated numbers of citations in WoS from current JTCVS papers in issues containing the 3 most-cited plenary session papers. Among 195 published plenary papers, the median number of citations in WoS and GS was 49 and 76, respectively. The median total number of citations in WoS was as follows: 51 for cardiac-category papers (n = 105); 61 for thoracic (n = 55), and 41 for congenital (n = 35). These values were higher than the median total number of citations for contemporary nonplenary JTCVS papers: cardiac (22, n = 55; P citations per year since publication for plenary publications was 5.9 (cardiac), 6 (thoracic), and 3.7 (congenital), respectively. Publications corresponding to the plenary sessions of the AATS are highly cited and include some of the seminal studies in our field in the past 20 years. Copyright © 2016 The American Association for Thoracic Surgery. Published by Elsevier Inc. All rights reserved.

  11. Nonuniversal power law scaling in the probability distribution of scientific citations.

    Science.gov (United States)

    Peterson, George J; Pressé, Steve; Dill, Ken A

    2010-09-14

    We develop a model for the distribution of scientific citations. The model involves a dual mechanism: in the direct mechanism, the author of a new paper finds an old paper A and cites it. In the indirect mechanism, the author of a new paper finds an old paper A only via the reference list of a newer intermediary paper B, which has previously cited A. By comparison to citation databases, we find that papers having few citations are cited mainly by the direct mechanism. Papers already having many citations ("classics") are cited mainly by the indirect mechanism. The indirect mechanism gives a power-law tail. The "tipping point" at which a paper becomes a classic is about 25 citations for papers published in the Institute for Scientific Information (ISI) Web of Science database in 1981, 31 for Physical Review D papers published from 1975-1994, and 37 for all publications from a list of high h-index chemists assembled in 2007. The power-law exponent is not universal. Individuals who are highly cited have a systematically smaller exponent than individuals who are less cited.

  12. Load-controlled moderate and high-intensity resistance training programs provoke similar strength gains in young women.

    Science.gov (United States)

    Alegre, Luis M; Aguado, Xavier; Rojas-Martín, Diego; Martín-García, María; Ara, Ignacio; Csapo, Robert

    2015-01-01

    While current exercise guidelines recommend progressive, high-intensity resistance training (RT) to promote muscle hypertrophy and strength gains, controversy exists regarding the efficacy of lighter-load RT. We compared 2 work-matched RT interventions that differed in training intensity. Fifteen women underwent 10 weeks of unilateral knee extensor RT. One leg was trained at increasing intensity (intensity leg, InL, 50-80% 1-repetition maximum [1-RM]), and training progression in the contralateral leg (volume leg, VoL, 50% 1-RM) was based on increasing training volumes. Quadriceps muscle size (ultrasound, dual energy X-ray absorptiometry) and strength (isokinetic dynamometry) were assessed on 4 occasions. Both training programs induced significant, yet comparable increases in muscle size (InL: +4.6-12%, VoL: +3.1-11%) and strength (InL: +10-16%, VoL: +10-14%). Training at lower than commonly suggested intensities may be an equally effective alternative form of RT. Factors other than training intensity, such as the total mechanical work during training, may strongly affect the training response. © 2014 Wiley Periodicals, Inc.

  13. Competitive naïveté between a highly successful invader and a functionally similar native species.

    Science.gov (United States)

    Heavener, Stephen J; Carthey, Alexandra J R; Banks, Peter B

    2014-05-01

    Naïveté can occur within any novel antagonistic interaction, and competitive forces play a fundamental role in shaping community structure, yet competitive naïveté has received very little attention in the literature to date. Naïveté towards a novel competitor is unlikely to result in immediate mortality, but could potentially affect access to resources and hence population growth and survival. In cases where only one species (either native or alien) remains naïve to the other, the species that recognizes the other will gain advantage, with implications for both the persistence of the native species and the establishment and spread of the invasive. The invasive black rat (Rattus rattus) has spread throughout many coastal areas of Australia, and competes with the native bush rat (Rattus fuscipes) wherever they coexist. As these rats have now been interacting for approximately 200 years, and multi-species rodent communities generally maintain their structure through olfactory communication, our aim was to determine whether these two very closely related species recognize one another's odors and use them to mediate their interactions. We used remote-sensing cameras deployed in single- and mixed-species sites to record the behavioral responses of each species to conspecific, heterospecific and control odors. Black rats investigated bush rat odors but not vice versa, suggesting that bush rats may remain naïve towards their new competitor. Highly successful invaders such as black rats may possess traits such as broad recognition templates and rapid learning capabilities that contribute to their ongoing success in invading new environments.

  14. Analysis of citations in four MIE proceedings.

    Science.gov (United States)

    Köhler, C O

    1987-01-01

    Scientific work in medical informatics has been going on for more than 25 years; the results of this work are published in one way or another. How are these publications used to avoid the invention of the wheel for the second and third time? To get an overview of this, four proceedings of the Medical Informatics Europe conferences out of the last eight years have been analysed, to show the behaviour of authors in different countries and in different years in respect of citations.

  15. [The citation analysis of Chinese Journal of Internal Medicine from 2005 to 2011].

    Science.gov (United States)

    Shen, Zhi-Wei; Shen, Xi-Bin; Hou, Jian-Jun; Ding, Yun-Qiu; Hu, Zhao-Hui; He, Hue-Mei

    2013-02-01

    To evaluate the academic level of Chinese Journal of Internal Medicine by analyzing its citation status by using bibliometrics method. The distribution of articles published in Chinese Journal of Internal Medicine from January, 2005 to December, 2011 indexed by Chinese Science Citation Database (CSCD) was analyzed. A total of 2809 articles were published in Chinese Journal of Internal Medicine between January,2005 and December, 2011. Among them, 832(29.62%) articles were cited for totally 1993 times. There were 14 authors whose total citation number in 2005-2011 was > or = 10 times. Authors of the cited articles came from 25 provinces, autonomous regions and municipalities. The regions from where the articles had the highest citation were Beijing (341 articles), Shanghai (87 articles), Guangdong (64 articles), Jiangsu (45 articles) and Zhejiang (43 articles). The medical institutions with the highest citation were Peking Union Medical College Hospital of Peking Union Medical College and Chinese Academy of Medical Sciences (205 times), Peking University People's Hospital (77 times), and Chinese PLA General Hospital (76 times). Quite a few high level academic papers had been published in Chinese Journal of Internal Medicine in recent years. Chinese Journal of Internal Medicine plays a good role in enhancing academic exchange.

  16. High similarity of Trypanosoma cruzi kDNA genetic profiles detected by LSSP-PCR within family groups in an endemic area of Chagas disease in Brazil

    Directory of Open Access Journals (Sweden)

    Sandra Maria Alkmim-Oliveira

    2014-10-01

    Full Text Available Introduction Determining the genetic similarities among Trypanosoma cruzi populations isolated from different hosts and vectors is very important to clarify the epidemiology of Chagas disease. Methods An epidemiological study was conducted in a Brazilian endemic area for Chagas disease, including 76 chronic chagasic individuals (96.1% with an indeterminate form; 46.1% with positive hemoculture. Results T. cruzi I (TcI was isolated from one child and TcII was found in the remaining (97.1% subjects. Low-stringency single-specific-primer-polymerase chain reaction (LSSP-PCR showed high heterogeneity among TcII populations (46% of shared bands; however, high similarities (80-100% among pairs of mothers/children, siblings, or cousins were detected. Conclusions LSSP-PCR showed potential for identifying similar parasite populations among individuals with close kinship in epidemiological studies of Chagas disease.

  17. Survey of formal and informal citation in Google search engine

    Directory of Open Access Journals (Sweden)

    Afsaneh Teymourikhani

    2016-03-01

    Full Text Available Aim: Informal citations is bibliographic information (title or Internet address, citing sources of information resources for informal scholarly communication and always neglected in traditional citation databases. This study is done, in order to answer the question of whether informal citations in the web environment are traceable. The present research aims to determine what proportion of web citations of Google search engine is related to formal and informal citation. Research method: Webometrics is the method used. The study is done on 1344 research articles of 98 open access journal, and the method that is used to extract the web citation from Google search engine is “Web / URL citation extraction". Findings: The findings showed that ten percent of the web citations of Google search engine are formal and informal citations. The highest formal citation in the Google search engine with 19/27% is in the field of library and information science and the lowest official citation by 1/54% is devoted to the field of civil engineering. The highest percentage of informal citations with 3/57% is devoted to sociology and the lowest percentage of informal citations by 0/39% is devoted to the field of civil engineering. Journal Citation is highest with 94/12% in the surgical field and lowest with 5/26 percent in the philosophy filed. Result: Due to formal and informal citations in the Google search engine which is about 10 percent and the reduction of this amount compared to previous research, it seems that track citations by this engine should be treated with more caution. We see that the amount of formal citation is variable in different disciplines. Cited journals in the field of surgery, is highest and in the filed of philosophy is lowest, this indicates that in the filed of philosophy, that is a subset of the social sciences, journals in scientific communication do not play a significant role. On the other hand, book has a key role in this filed

  18. A Tri-Citation Analysis Exploring the Citation Image of Kurt Lewin.

    Science.gov (United States)

    Marion, Linda S.

    2002-01-01

    Presents the initial phase of a comparison of cocitation and social network analysis methods for the study of scholarly communication, based on a case study of the intellectual contributions of Kurt Lewin, a social psychologist. Highlights include an author tri-citation analysis; cluster analysis; multidimensional scaling; and diffusion of ideas.…

  19. Using Citation Indexes, Citation Searching, and Bibliometrics to Improve Chemistry Scholarship, Research, and Administration

    Science.gov (United States)

    Buntrock, Robert E.

    2016-01-01

    Citation searching and bibliometrics are terms foreign to many chemists and educators, yet well-known and used by librarians and information specialists. This article aims to help chemistry students, educators, and other readers of this "Journal" to better appreciate and use these powerful and profound methods. Although these subjects…

  20. Towards a “Book Publishers Citation Reports”. First approach using the “ Book Citation Index”

    Directory of Open Access Journals (Sweden)

    Torres-Salinas, Daniel

    2012-12-01

    Full Text Available The absence of books and book chapters in the Web of Science Citation Indexes (SCI, SSCI and A&HCI has always been considered an important flaw but the Thomson Reuters ‘Book Citation Index’ database was finally available in October of 2010 indexing 29,618 books and 379,082 book chapters. The Book Citation Index opens a new window of opportunities for analyzing Humanities and Social Sciences from a bibliometric point of view. The main objective of this article is to analyze different impact indicators referred to the scientific publishers included in the Book Citation Index for the Social Sciences and Humanities fields during 2006-2011. This way we construct what we have called the ‘Book Publishers Citation Reports’. For this, we present a total of 19 rankings according to the different disciplines in Humanities & Arts and Social Sciences & Law with six indicators for scientific publishers.

    La ausencia de libros y capítulos de libros en los índices de citas presentes en las bases de datos de la Web of Science ha sido tradicionalmente una de sus más importantes debilidades. Sin embargo, Thomson Reuters en Octubre de 2010 lanzó el Book Citation Index, un nuevo índice de citas que contaba con 29.618 libros y 379.082 capítulos de libros. Este producto ha abierto nuevas posibilidades para el análisis bibliométrico de campos como las Humanidades y las Ciencias Sociales. Precisamente el objetivo principal de esta nota es analizar a través de diferentes indicadores las editoriales de los ámbitos de Humanidades y Ciencias Sociales indexadas en el Book Citation Index durante los años 2006-2011. Más concretamente se ha probado la posibilidad de desarrollar un ranking de editoriales de libros basado en la citación y la producción de las mismas. Para ello se presentan una colección de rankings con seis indicadores bibliométricos para un total de 19 disciplinas científicas.

  1. How citation boosts promote scientific paradigm shifts and Nobel Prizes

    CERN Document Server

    Mazloumian, Amin; Helbing, Dirk; Lozano, Sergi; Fortunato, Santo; 10.1371/journal.pone.0018975

    2011-01-01

    Nobel Prizes are commonly seen to be among the most prestigious achievements of our times. Based on mining several million citations, we quantitatively analyze the processes driving paradigm shifts in science. We find that groundbreaking discoveries of Nobel Prize Laureates and other famous scientists are not only acknowledged by many citations of their landmark papers. Surprisingly, they also boost the citation rates of their previous publications. Given that innovations must outcompete the rich-gets-richer effect for scientific citations, it turns out that they can make their way only through citation cascades. A quantitative analysis reveals how and why they happen. Science appears to behave like a self-organized critical system, in which citation cascades of all sizes occur, from continuous scientific progress all the way up to scientific revolutions, which change the way we see our world. Measuring the "boosting effect" of landmark papers, our analysis reveals how new ideas and new players can make their...

  2. Similarity Measure of Graphs

    Directory of Open Access Journals (Sweden)

    Amine Labriji

    2017-07-01

    Full Text Available The topic of identifying the similarity of graphs was considered as highly recommended research field in the Web semantic, artificial intelligence, the shape recognition and information research. One of the fundamental problems of graph databases is finding similar graphs to a graph query. Existing approaches dealing with this problem are usually based on the nodes and arcs of the two graphs, regardless of parental semantic links. For instance, a common connection is not identified as being part of the similarity of two graphs in cases like two graphs without common concepts, the measure of similarity based on the union of two graphs, or the one based on the notion of maximum common sub-graph (SCM, or the distance of edition of graphs. This leads to an inadequate situation in the context of information research. To overcome this problem, we suggest a new measure of similarity between graphs, based on the similarity measure of Wu and Palmer. We have shown that this new measure satisfies the properties of a measure of similarities and we applied this new measure on examples. The results show that our measure provides a run time with a gain of time compared to existing approaches. In addition, we compared the relevance of the similarity values obtained, it appears that this new graphs measure is advantageous and  offers a contribution to solving the problem mentioned above.

  3. Authorship and citation manipulation in academic research

    Science.gov (United States)

    2017-01-01

    Some scholars add authors to their research papers or grant proposals even when those individuals contribute nothing to the research effort. Some journal editors coerce authors to add citations that are not pertinent to their work and some authors pad their reference lists with superfluous citations. How prevalent are these types of manipulation, why do scholars stoop to such practices, and who among us is most susceptible to such ethical lapses? This study builds a framework around how intense competition for limited journal space and research funding can encourage manipulation and then uses that framework to develop hypotheses about who manipulates and why they do so. We test those hypotheses using data from over 12,000 responses to a series of surveys sent to more than 110,000 scholars from eighteen different disciplines spread across science, engineering, social science, business, and health care. We find widespread misattribution in publications and in research proposals with significant variation by academic rank, discipline, sex, publication history, co-authors, etc. Even though the majority of scholars disapprove of such tactics, many feel pressured to make such additions while others suggest that it is just the way the game is played. The findings suggest that certain changes in the review process might help to stem this ethical decline, but progress could be slow. PMID:29211744

  4. AAS Publishing News: Astronomical Software Citation Workshop

    Science.gov (United States)

    Kohler, Susanna

    2015-07-01

    Do you write code for your research? Use astronomical software? Do you wish there were a better way of citing, sharing, archiving, or discovering software for astronomy research? You're not alone! In April 2015, AAS's publishing team joined other leaders in the astronomical software community in a meeting funded by the Sloan Foundation, with the purpose of discussing these issues and potential solutions. In attendance were representatives from academic astronomy, publishing, libraries, for-profit software sharing platforms, telescope facilities, and grantmaking institutions. The goal of the group was to establish “protocols, policies, and platforms for astronomical software citation, sharing, and archiving,” in the hopes of encouraging a set of normalized standards across the field. The AAS is now collaborating with leaders at GitHub to write grant proposals for a project to develop strategies for software discoverability and citation, in astronomy and beyond. If this topic interests you, you can find more details in this document released by the group after the meeting: http://astronomy-software-index.github.io/2015-workshop/ The group hopes to move this project forward with input and support from the broader community. Please share the above document, discuss it on social media using the hashtag #astroware (so that your conversations can be found!), or send private comments to julie.steffen@aas.org.

  5. The citation pattern of Brazilian economists

    Directory of Open Access Journals (Sweden)

    João Ricardo Faria

    2007-03-01

    Full Text Available This paper studies the determinants of international citations by Brazilian economists in papers published in the top domestic journals in 1994 and 2004. Brazilian research in economics has become more open to international influence and widespread geographically; researchers more specialized and technically oriented and the research topics more diversified. However, Brazil is plagued by editorial favoritism, reflected in the negative and significant impact of references to the works authored by domestic journals editors on international citations. We also find that longer technical papers written on topics other than the economic history of Brazil are more likely to cite foreign literature.Este artigo estuda os determinantes das citações internacionais dos economistas brasileiros em artigos publicados nas principais revistas domésticas de economia nos anos 1994 e 2004. A pesquisa de economia no Brasil se tornou mais aberta à influencia internacional e mais espalhada geograficamente; os pesquisadores mais especializados e tecnicamente orientados e os tópicos de pesquisa mais diversificados. Entretanto, a pesquisa continua sendo prejudicada pelo favoritismo editorial, refletido no impacto negativo e significante das referências dos autores aos trabalhos dos editores das revistas domésticas sobre as citacoes internacionais. Constatamos que artigos técnicos mais longos sobre tópicos que não sejam sobre história econômica do Brasil têm maior chance de citar a literatura internacional.

  6. Authorship and citation manipulation in academic research.

    Science.gov (United States)

    Fong, Eric A; Wilhite, Allen W

    2017-01-01

    Some scholars add authors to their research papers or grant proposals even when those individuals contribute nothing to the research effort. Some journal editors coerce authors to add citations that are not pertinent to their work and some authors pad their reference lists with superfluous citations. How prevalent are these types of manipulation, why do scholars stoop to such practices, and who among us is most susceptible to such ethical lapses? This study builds a framework around how intense competition for limited journal space and research funding can encourage manipulation and then uses that framework to develop hypotheses about who manipulates and why they do so. We test those hypotheses using data from over 12,000 responses to a series of surveys sent to more than 110,000 scholars from eighteen different disciplines spread across science, engineering, social science, business, and health care. We find widespread misattribution in publications and in research proposals with significant variation by academic rank, discipline, sex, publication history, co-authors, etc. Even though the majority of scholars disapprove of such tactics, many feel pressured to make such additions while others suggest that it is just the way the game is played. The findings suggest that certain changes in the review process might help to stem this ethical decline, but progress could be slow.

  7. Semi-automatic Citation Correction with Lemon8-XML

    Directory of Open Access Journals (Sweden)

    MJ Suhonos

    2009-03-01

    Full Text Available The Lemon8-XML software application, developed by the Public Knowledge Project (PKP, provides an open-source, computer-assisted interface for reliable citation structuring and validation. Lemon8-XML combines citation parsing algorithms with freely-available online indexes such as PubMed, WorldCat, and OAIster. Fully-automated markup of entire bibliographies may be a genuine possibility using this approach. Automated markup of citations would increase bibliographic accuracy while reducing copyediting demands.

  8. Classical sickle beta-globin haplotypes exhibit a high degree of long-range haplotype similarity in African and Afro-Caribbean populations.

    Science.gov (United States)

    Hanchard, Neil; Elzein, Abier; Trafford, Clare; Rockett, Kirk; Pinder, Margaret; Jallow, Muminatou; Harding, Rosalind; Kwiatkowski, Dominic; McKenzie, Colin

    2007-08-10

    The sickle (betas) mutation in the beta-globin gene (HBB) occurs on five "classical" betas haplotype backgrounds in ethnic groups of African ancestry. Strong selection in favour of the betas allele - a consequence of protection from severe malarial infection afforded by heterozygotes - has been associated with a high degree of extended haplotype similarity. The relationship between classical betas haplotypes and long-range haplotype similarity may have both anthropological and clinical implications, but to date has not been explored. Here we evaluate the haplotype similarity of classical betas haplotypes over 400 kb in population samples from Jamaica, The Gambia, and among the Yoruba of Nigeria (Hapmap YRI). The most common betas sub-haplotype among Jamaicans and the Yoruba was the Benin haplotype, while in The Gambia the Senegal haplotype was observed most commonly. Both subtypes exhibited a high degree of long-range haplotype similarity extending across approximately 400 kb in all three populations. This long-range similarity was significantly greater than that seen for other haplotypes sampled in these populations (P haplotypes were highly conserved, with very strong linkage disequilibrium (LD) extending a megabase across the betas mutation. Two different classical betas haplotypes, sampled from different populations, exhibit comparable and extensive long-range haplotype similarity and strong LD. This LD extends across the adjacent recombination hotspot, and is discernable at distances in excess of 400 kb. Although the multi-centric geographic distribution of betas haplotypes indicates strong subdivision among early Holocene sub-Saharan populations, we find no evidence that selective pressures imposed by falciparum malaria varied in intensity or timing between these subpopulations. Our observations also suggest that cis-acting loci, which may influence outcomes in sickle cell disease, could lie considerable distances away from beta-globin.

  9. The Ripple Effect: Citation Chain Reactions of a Nobel Prize

    DEFF Research Database (Denmark)

    Faber Frandsen, Tove; Nicolaisen, Jeppe

    2013-01-01

    This paper explores the possible citation chain reactions of a Nobel Prize using the mathematician Robert J. Aumann as a case example. The results show that the award of the Nobel Prize in 2005 affected not only the citations to his work, but also affected the citations to the references in his...... scientific oeuvre. The results indicate that the spillover effect is almost as powerful as the effect itself. We are consequently able to document a ripple effect in which the awarding of the Nobel Prize ignites a citation chain reaction to Aumann's scientific ouvre and to the references in its nearest...

  10. GPM Ground Validation UND Citation Cloud Microphysics OLYMPEX V1

    Data.gov (United States)

    National Aeronautics and Space Administration — The GPM Ground Validation UND Citation Cloud Microphysics OLYMPEX dataset includes measurements of cloud microphysics, state of the atmosphere parameters,...

  11. GPM GROUND VALIDATION UND CITATION CLOUD MICROPHYSICS GCPEX V2

    Data.gov (United States)

    National Aeronautics and Space Administration — The GPM Ground Validation UND Citation Cloud Microphysics GCPEx dataset includes instrument measurements of cloud microphysics, state of atmosphere parameters. bulk...

  12. GPM GROUND VALIDATION UND CITATION NAVIGATION DATA IPHEx V1

    Data.gov (United States)

    National Aeronautics and Space Administration — The GPM Ground Validation UND Citation Navigation Data IPHEx dataset consists of files containing records that include flight time, aircraft location (latitude,...

  13. Comparison of self-citation by peer reviewers in a journal with single-blind peer review versus a journal with open peer review.

    Science.gov (United States)

    Levis, Alexander W; Leentjens, Albert F G; Levenson, James L; Lumley, Mark A; Thombs, Brett D

    2015-12-01

    Some peer reviewers may inappropriately, or coercively request that authors include references to the reviewers' own work. The objective of this study was to evaluate whether, compared to reviews for a journal with single-blind peer review, reviews for a journal with open peer review included (1) fewer self-citations; (2) a lower proportion of self-citations without a rationale; and (3) a lower ratio of proportions of citations without a rationale in self-citations versus citations to others' work. Peer reviews for published manuscripts submitted in 2012 to a single-blind peer review journal, the Journal of Psychosomatic Research, were previously evaluated (Thombs et al., 2015). These were compared to publically available peer reviews of manuscripts published in 2012 in an open review journal, BMC Psychiatry. Two investigators independently extracted data for both journals. There were no significant differences between journals in the proportion of all reviewer citations that were self-citations (Journal of Psychosomatic Research: 71/225, 32%; BMC Psychiatry: 90/315, 29%; p=.50), or in the proportion of self-citations without a rationale (Journal of Psychosomatic Research: 15/71, 21%; BMC Psychiatry: 12/90, 13%; p=.21). There was no significant difference between journals in the proportion of self-citations versus citations to others' work without a rationale (p=.31). Blind and open peer review methodologies have distinct advantages and disadvantages. The present study found that, in reasonably similar journals that use single-blind and open review, there were no substantive differences in the pattern of peer reviewer self-citations. Copyright © 2015 Elsevier Inc. All rights reserved.

  14. Woods with physical, mechanical and acoustic properties similar to those of Caesalpinia echinata have high potential as alternative woods for bow makers

    Directory of Open Access Journals (Sweden)

    Eduardo Luiz Longui

    2014-09-01

    Full Text Available For nearly two hundred years, Caesalpinia echinata wood has been the standard for modern bows. However, the threat of extinction and the enforcement of trade bans have required bow makers to seek alternative woods. The hypothesis tested was that woods with physical, mechanical and acoustic properties similar to those of C. echinata would have high potential as alternative woods for bows. Accordingly, were investigated Handroanthus spp., Mezilaurus itauba, Hymenaea spp., Dipteryx spp., Diplotropis spp. and Astronium lecointei. Handroanthus and Diplotropis have the greatest number of similarities with C. echinata, but only Handroanthus spp. showed significant results in actual bow manufacture, suggesting the importance of such key properties as specific gravity, speed of sound propagation and modulus of elasticity. In practice, Handroanthus and Dipteryx produced bows of quality similar to that of C. echinata.

  15. 引用文獻分析與引用動機研究 Citation Analysis and Citation Motivation

    OpenAIRE

    Ming-yueh Tsay

    2001-01-01

    Citation analysis has been an important area of informetrics (or bibliometrics) for severai decades. It mainly deals with the study of the relationship between citing and cited documents. A number of studies have been done to explore citation analysis and its applications. These studies have different opinions about the nature and the complexities of the citing process. Theories of citation have been debated for decades and can never be complete. By reviewing many empirical studies, this art...

  16. Classical sickle beta-globin haplotypes exhibit a high degree of long-range haplotype similarity in African and Afro-Caribbean populations

    Directory of Open Access Journals (Sweden)

    Jallow Muminatou

    2007-08-01

    Full Text Available Abstract Background The sickle (βs mutation in the beta-globin gene (HBB occurs on five "classical" βs haplotype backgrounds in ethnic groups of African ancestry. Strong selection in favour of the βs allele – a consequence of protection from severe malarial infection afforded by heterozygotes – has been associated with a high degree of extended haplotype similarity. The relationship between classical βs haplotypes and long-range haplotype similarity may have both anthropological and clinical implications, but to date has not been explored. Here we evaluate the haplotype similarity of classical βs haplotypes over 400 kb in population samples from Jamaica, The Gambia, and among the Yoruba of Nigeria (Hapmap YRI. Results The most common βs sub-haplotype among Jamaicans and the Yoruba was the Benin haplotype, while in The Gambia the Senegal haplotype was observed most commonly. Both subtypes exhibited a high degree of long-range haplotype similarity extending across approximately 400 kb in all three populations. This long-range similarity was significantly greater than that seen for other haplotypes sampled in these populations (P s mutation. Conclusion Two different classical βs haplotypes, sampled from different populations, exhibit comparable and extensive long-range haplotype similarity and strong LD. This LD extends across the adjacent recombination hotspot, and is discernable at distances in excess of 400 kb. Although the multi-centric geographic distribution of βs haplotypes indicates strong subdivision among early Holocene sub-Saharan populations, we find no evidence that selective pressures imposed by falciparum malaria varied in intensity or timing between these subpopulations. Our observations also suggest that cis-acting loci, which may influence outcomes in sickle cell disease, could lie considerable distances away from β-globin.

  17. Open Access Papers Have a Greater Citation Advantage in the Author-Pays Model

    Directory of Open Access Journals (Sweden)

    Elaine Sullo

    2016-03-01

    ; they also verified that the journals were using the APC model by visiting each journal’s website. Because of the large number of subject areas of the identified journals, the researchers decided to classify the journals into four broader categories: Health Sciences, Life Sciences, Natural Sciences, and Social Sciences and Humanities. To calculate the impact of OA papers, citation per paper (CPP was calculated for each subject area. Impact values were calculated on an annual basis as well. The researchers calculated the citation advantage of OA articles as the “difference between the open access and toll access impacts in terms of a percentage of the latter” (p. 585. Main Results – The authors categorized their findings according to three themes: the growth of APC funded OA papers, the number of OA papers by discipline, and citation advantage of OA vs. TA in general and by subject area. Together, Springer and Elsevier published 18,654 OA papers in the APC journals; this number represents 4.7% of the 396,760 papers published between 2007 and 2011. While the number of OA and TA papers has been growing annually, the number of OA papers has been growing more rapidly compared to the TA papers. In terms of subject areas, Life Sciences had the largest number of OA and TA papers (184,315, followed by Health Sciences (149,341, Natural Sciences (121,274, and Social Sciences and Humanities (42,824. Natural Sciences had the most OA papers (5.7% in terms of the number of papers in this subject area being OA papers, followed by Social Sciences and Humanities (5.2%, Health Sciences (4.6% and Life Sciences (3.6%. Overall, the researchers found that the impact values of OA papers were larger than those of the TA papers for each year examined. In considering subject areas, in all disciplines except Life Sciences, the most highly cited paper in the field is an OA paper. In Life Sciences, the most highly cited TA paper had 2,215 citations, compared to the OA paper, which had 1

  18. Ranking Leading Econometrics Journals using Citations Data from ISI and RePEc

    NARCIS (Netherlands)

    C-L. Chang (Chia-Lin); M.J. McAleer (Michael)

    2013-01-01

    markdownabstract__Abstract__ The paper focuses on the robustness of rankings of academic journal quality and research impact of 10 leading econometrics journals taken from the Thomson Reuters ISI Web of Science (ISI) Category of Economics, using citations data from ISI and the highly accessible

  19. Ranking Leading Econometrics Journals Using Citations Data from ISI and RePEc

    NARCIS (Netherlands)

    C-L. Chang (Chia-Lin); M.J. McAleer (Michael)

    2013-01-01

    markdownabstract__Abstract __ The paper focuses on the robustness of rankings of academic journal quality and research impact of 10 leading econometrics journals taken from the Thomson Reuters ISI Web of Science (ISI) Category of Economics, using citations data from ISI and the highly accessible

  20. [An analysis of articles published by academic groups in pediatrics in Chinese Journal of Pediatrics and their citations].

    Science.gov (United States)

    Song, Qiurong; Hu, Yanping; Li, Linping

    2014-08-01

    To explore academic significance and guiding function played by subspecialty groups of the Society of Pediatrics, Chinese Medical Association on Chinese pediatric clinical practice through a statistical analysis of the articles published by the subspecialty groups. Bibliometric methods were used to analyze the number of articles, article types, total citations, highly cited articles and the distribution of citing journals. Totally 7 156 articles were published in Chinese Journal of Pediatrics from 1993 (31) to 2012 (51), of which 187 by subspecialty groups of pediatrics (2.6%), with a total citations of 11 985. Among them, 137 articles were cited with a citation rate of 73.3% and average citations for each article was 64.1. Articles classified as clinical guidelines had been totally cited for 10 900 times with average citations of 123.86 per article. The article on Neonatal hypoxic ischemic encephalopathy diagnosis and clinical index was cited 1 791 times ranked in highly cited literatures. All the top three cited literature periodicals were core journals of pediatrics, and 10 periodicals among the top 20 were in pediatrics and the rest in other medical fields. The number of the articles published by the subspecialty groups of pediatrics was increasing year by year though the portion it in the total number of the articles in the journal was not large. However, the citation frequency of the articles by the subspecialty groups of pediatrics was high, making an obvious contribution to the total citations of Chinese Journal of Pediatrics. The total citation rate of clinical guideline articles and their average rate was higher than those of other articles published in this journal, which meant that this type of articles provided academic references with guiding significance for clinical practice of pediatrics and for other medical fields as well.

  1. Modeling the time-periodicity of in-degree distributions in scientific citation networks

    CERN Document Server

    Liu, Qi; Xie, Zonglin; Dong, Enming; Li, Jianping

    2016-01-01

    In a range of citation networks, the in-degree distributions boast time-periodicity---the distributions of citations per article published each year present similar scale-free tails. This phenomenon can be regarded as a consequence of the emergence of hot topics and the existence of the "burst" phenomenon. With this inference considered, a geometric model based on our previous study is established, in which the sizes of the influence zones of nodes follow the same power-law distribution and decrease with their ages. The model successfully reproduces the time-periodicity of the in-degree distributions of the empirical data, and accounts for the presence of citation burst as well. Moreover, a reasonable explanation for the emergence of the scale-free tails by regarding the citation behavior between articles as a "yes/no" experiment is presented. The model can also predict the time-periodicity of the local clustering coefficients, which indicates that the model is a good tool in researches on the evolutionary me...

  2. Do open access working papers attract more citations compared to printed journal articles from the same research unit?

    DEFF Research Database (Denmark)

    Ingwersen, Peter; Elleby, Anita

    2011-01-01

    This paper presents the results of an empirical case study of the characteristics of citations received by 10 open accessible non-peer reviewed working papers published by a prestigious multidisciplinary, but basically social science research institute, compared to 10 printed peer reviewed journal...... publication types, the citation distributions over the individual sample publications and observed years as well as over external, institutional and personal self-citations. The institute concerned is the Danish Institute for International Studies (DIIS), Copenhagen. The results demonstrate that the open...... access working papers publicly accessible through the DIIS e-archive became far less cited than the corresponding sample of DIIS journal articles published in printed form. However, highly cited working papers have higher impact than the average of the lower half of cited articles. Citation time series...

  3. Do open access working papers attract more citations compared to printed journal articles from the same research unit?

    DEFF Research Database (Denmark)

    Ingwersen, Peter; Elleby, Anita

    2011-01-01

    This paper presents the results of an empirical case study of the characteristics of citations received by 10 open accessible non-peer reviewed working papers published by a prestigious multidisciplinary, but basically social science research institute, compared to 10 printed peer reviewed journal...... articles published in the same year (2004) by the same institute and predominantly by the same authors. The study analyzes the total amount of citations and citation impact observed in Web of Science (WoS) and Google Scholar (GS) received during the five-year period 2004-09 (February) by the two...... access working papers publicly accessible through the DIIS e-archive became far less cited than the corresponding sample of DIIS journal articles published in printed form. However, highly cited working papers have higher impact than the average of the lower half of cited articles. Citation time series...

  4. DUID prevalence in Colorado's DUI citations.

    Science.gov (United States)

    Wood, Ed; Salomonsen-Sautel, Stacy

    2016-06-01

    There are limited studies that measure the prevalence of driving under the influence of drugs (DUID) based upon impairment measures because most prevalence studies are based on drug tests. The aim of this study was to provide the first estimate of DUID prevalence in Colorado using data collected by Colorado law enforcement officers in vehicular homicide (VH) and vehicular assault (VA) cases, and reported in court records. The four research questions of this study were answered by completing independent t-tests or Mann-Whitney U tests, Pearson chi-square analyses or Fisher's exact tests, and Kruskal-Wallis tests. Seventy percent (119 out of 170) of the cases involved alcohol only and 30% (51 out of 170) involved drugs. Of the latter cases, 32 cases involved a combination of alcohol and drugs and 19 cases identified drugs only, with no alcohol. Marijuana was the most commonly cited drug (23 cases); however, it was the sole impairing substance identified in only three cases. Polydrug use was very common among DUID cases, which makes it difficult to identify which drug or drugs caused the impairment responsible for the Driving Under the Influence citation. This study revealed tha (a) drugged driving is a frequent cause of DUI citations in cases charged with VH or VA; (b) that polydrug use, rather than marijuana, is the most common cause of drugged driving in Colorado; and (c) that current warrant procedures render blood test results meaningless in cases of marijuana-impairment. States should collect and analyze DUID data to ensure legislators focus on the right DUID problems to improve biological testing for drugs, adopt more appropriate roadside testing, and enact stronger DUID laws to protect the public. Copyright © 2016 Elsevier Ltd and National Safety Council. All rights reserved.

  5. Two Decades of Research on Strategic Alliances: Analysis of Citations, Co-citations and Themes Researched

    Directory of Open Access Journals (Sweden)

    Manuel Portugal Ferreira

    2014-12-01

    Full Text Available Research on strategic alliances has a long tradition in management studies. Strategic alliances have been investigated using multiple theoretical lenses from RBV to agency and transaction cost, and diverse contexts, from the semiconductor to airline industries. In this study we scrutinize the extant strategic alliance research in thirtyone top-ranked business/management journals, over a twenty-year period, from 1993 to 2012. In a sample of 866 articles we conducted citation and co-citation analyses employing social network techniques and factor analysis to identify research themes and make sense of the stock of accumulated knowledge and theoretical trends. We were able to identify some shifts in research over time, namely from a focus on performance and theoretical emphasis on transaction cost theory and governance concerns, moving to a learning and knowledge transfer approach, social networks and collaboration. This study provides the foundations over which future research may develop to fill conceptual and empirical gaps.

  6. Data Citation Standard: A Means to Support Data Sharing, Attribution, and Traceability

    Science.gov (United States)

    McCallum, I.; Plag, H. P.; Fritz, S.

    2012-04-01

    providers. This naturally leads to a at-best non-standard form of data citation or, in the worst case, no data citation at all. The testbed implementation will rectify this situation and help to identify issues not covered by the standard. The process of implementing and iteratively improving the draft is led by the GEO Work Plan Task ID-03 under the Institutions and Development Board; coordinated with the GEO working groups in charge of developing the GEOSS Common Infrastructure (e.g., the Architecture Board, SIF, DSTF, GCI-CT; with other groups within GEO, such as the Data Sharing Task Force, who have initiated similar activities, and with organizations outside of GEO developing the internationally emerging specifications. Metadata for GEOSS data and products may have to be extended to support data citation. It is expected that the availability of a draft citation standard will increase the attractiveness of GEO and GEOSS for scientists by fostering acknowledgment of their contributions when others use them. The testbed implementation will provide valuable insight into issues that need to be addressed and this will be infused into the international discussion on data citation.

  7. Ethical Considerations in Citing Scientific Literature and Using Citation Analysis in Evaluation of Research Performance.

    Science.gov (United States)

    Kotiaho, Janne S.

    2002-01-01

    Examines possible sources of bias in the citation process and discusses consequences they may have on researchers. Discusses subjective and biased choice of citations; whether to cite reviews or original publications; citation errors; and whether citation analysis is a good measure of quality. Concludes citation analysis may be far from ideal way…

  8. Predictive Aspects of a Stochastic Model for Citation Processes.

    Science.gov (United States)

    Glanzel, W.; Schubert, A.

    1995-01-01

    A statistical model for citation processes is presented as a particular version of a nonhomogenous birth process. The mean value function and special transition probabilities, which can readily be calculated on the basis of known and estimated parameters, give essential information on the change of citation impact in time. (10 references) (KRN)

  9. Using citation data to improve retrieval from MEDLINE.

    Science.gov (United States)

    Bernstam, Elmer V; Herskovic, Jorge R; Aphinyanaphongs, Yindalon; Aliferis, Constantin F; Sriram, Madurai G; Hersh, William R

    2006-01-01

    To determine whether algorithms developed for the World Wide Web can be applied to the biomedical literature in order to identify articles that are important as well as relevant. DESIGN AND MEASUREMENTS A direct comparison of eight algorithms: simple PubMed queries, clinical queries (sensitive and specific versions), vector cosine comparison, citation count, journal impact factor, PageRank, and machine learning based on polynomial support vector machines. The objective was to prioritize important articles, defined as being included in a pre-existing bibliography of important literature in surgical oncology. RESULTS Citation-based algorithms were more effective than noncitation-based algorithms at identifying important articles. The most effective strategies were simple citation count and PageRank, which on average identified over six important articles in the first 100 results compared to 0.85 for the best noncitation-based algorithm (p PageRank more than simple citation count. However, in spite of citation lag, citation-based algorithms remain more effective than noncitation-based algorithms. CONCLUSION Algorithms that have proved successful on the World Wide Web can be applied to biomedical information retrieval. Citation-based algorithms can help identify important articles within large sets of relevant results. Further studies are needed to determine whether citation-based algorithms can effectively meet actual user information needs.

  10. 1 CFR 8.9 - Form of citation.

    Science.gov (United States)

    2010-01-01

    ... 1 General Provisions 1 2010-01-01 2010-01-01 false Form of citation. 8.9 Section 8.9 General Provisions ADMINISTRATIVE COMMITTEE OF THE FEDERAL REGISTER SPECIAL EDITIONS OF THE FEDERAL REGISTER CODE OF FEDERAL REGULATIONS § 8.9 Form of citation. The Code of Federal Regulations may be cited by title and...

  11. Borrowed Authority: The American Catholic Bishops' Argument by Citation

    Science.gov (United States)

    O'Keefe, Meaghan M.

    2015-01-01

    Rhetorical use of citation is a means of indirectly reaffirming authority while avoiding the appearance of argument. It is therefore an especially useful strategy for people and institutions with compromised public images. This article compares the American Catholic bishops' written citational patterns in the United States Conference of Catholic…

  12. A document clustering and ranking system for exploring MEDLINE citations.

    Science.gov (United States)

    Lin, Yongjing; Li, Wenyuan; Chen, Keke; Liu, Ying

    2007-01-01

    A major problem faced in biomedical informatics involves how best to present information retrieval results. When a single query retrieves many results, simply showing them as a long list often provides poor overview. With a goal of presenting users with reduced sets of relevant citations, this study developed an approach that retrieved and organized MEDLINE citations into different topical groups and prioritized important citations in each group. A text mining system framework for automatic document clustering and ranking organized MEDLINE citations following simple PubMed queries. The system grouped the retrieved citations, ranked the citations in each cluster, and generated a set of keywords and MeSH terms to describe the common theme of each cluster. Several possible ranking functions were compared, including citation count per year (CCPY), citation count (CC), and journal impact factor (JIF). We evaluated this framework by identifying as "important" those articles selected by the Surgical Oncology Society. Our results showed that CCPY outperforms CC and JIF, i.e., CCPY better ranked important articles than did the others. Furthermore, our text clustering and knowledge extraction strategy grouped the retrieval results into informative clusters as revealed by the keywords and MeSH terms extracted from the documents in each cluster. The text mining system studied effectively integrated text clustering, text summarization, and text ranking and organized MEDLINE retrieval results into different topical groups.

  13. Evaluating Academic Journals Using Impact Factor and Local Citation Score

    Science.gov (United States)

    Chung, Hye-Kyung

    2007-01-01

    This study presents a method for journal collection evaluation using citation analysis. Cost-per-use (CPU) for each title is used to measure cost-effectiveness with higher CPU scores indicating cost-effective titles. Use data are based on the impact factor and locally collected citation score of each title and is compared to the cost of managing…

  14. References and Bibliographical Citations in Research Works: A ...

    African Journals Online (AJOL)

    This paper highlighted the r elevance and ind ispensab ility of reference and bibliographical citations in any research work. It identified the problems students and researchers encounter in making correct, appropriate and relevant bibliographical citations and addressed them by discussing various methods and formats of ...

  15. A Multiyear Citation Analysis of Three Rehabilitation Journals

    Science.gov (United States)

    Cook, Daniel W.; Hulett, Laura

    2004-01-01

    Using citation analysis, 3 rehabilitation journals were compared on average number of articles published per year, average number of references per article, number of self-citations, and number of times published articles were cited by other journals for the 4-year periods of 1999 through 2002 and 1977 through 1980. These data were then related to…

  16. A citation analysis of systematic review and meta-analysis published in Chinese journals.

    Science.gov (United States)

    Du, Liang; Chen, Yaolong; Huang, Jin; Li, Youping

    2012-05-01

    The numbers of systematic reviews (SRs) and meta-analyses (MAs) published in China have dramatically increased in recent years. Comprehensive analysis of their citation status may prove beneficial to the production and integration of high quality research, thereby increasing the quality of medical policy-making, research, and clinical practice. The Chinese Medical Citation Index (up to February 2010) was searched to identify SRs/MAs. Data were input using Microsoft Excel 2007 and statistical analysis was performed using SPSS 15.0 software. A total of 2224 SRs/MAs were included. Among the 591 different publications distributed from 1994 to 2009, the median publication count per publication was two (1-270). The total citation count was 2796, with an average of 1.26 citations per publication (0-57 citation). SRs/MAs that were never cited amounted to 1380 papers (62.1%), distributed in 272 journals (46.0%). MAs were easier to find than SRs. The major conditions affecting citation were whether or not the report was published in a Western field (r = 0.287, P = 0.000); whether or not the report was published in an "evidence-based" titled journal (r =-0.480, P = 0.002); and the length of time since publication (r = 0.455, P = 0.000). Since 2004, publication of SRs/MAs has exhibited a downward trend, forming a negative correlation with publication count. Over half of the SRs/MAs included had never been cited by the time research had concluded. In many other cases these reports exhibited extremely low citation rates. Citation of traditional Chinese medicine SRs/MAs exceeded that of Western medicine studies. This indirectly suggests that the quality of SRs/MAs usage is relatively low in China. This may be a result of various reasons and suggests that emphasis should be placed on raising the quality of SRs/MAs and significance of practical application. © 2012 Blackwell Publishing Asia Pty Ltd and Chinese Cochrane Center, West China Hospital of Sichuan University.

  17. Journal rankings by citation analysis in health sciences librarianship.

    Science.gov (United States)

    Fang, M L

    1989-01-01

    The purpose of this study was to identify objectively a hierarchical ranking of journals for health sciences librarians with faculty status. Such a guideline can indicate a journal's value for promotion and tenure consideration. Lists of recent research articles (1982-1986) in health sciences librarianship, and articles written by health sciences librarians, were compiled by searching Social SCISEARCH and MEDLINE. The journals publishing those articles are presented. Results show BMLA as the most prominent journal in the field. Therefore, citations from articles in BMLA from 1982 to 1986 were chosen as a sample for citation analysis. Citation analysis was employed to identify the most frequently cited journals. Some characteristics of the citations in BMLA are also discussed. The ranking of journals based on citation frequency, as a result, was identified. PMID:2655785

  18. Models for predicting and explaining citation count of biomedical articles.

    Science.gov (United States)

    Fu, Lawrence D; Aliferis, Constantin

    2008-11-06

    The single most important bibliometric criterion for judging the impact of biomedical papers and their authors work is the number of citations received which is commonly referred to as citation count. This metric however is unavailable until several years after publication time. In the present work, we build computer models that accurately predict citation counts of biomedical publications within a deep horizon of ten years using only predictive information available at publication time. Our experiments show that it is indeed feasible to accurately predict future citation counts with a mixture of content-based and bibliometric features using machine learning methods. The models pave the way for practical prediction of the long-term impact of publication, and their statistical analysis provides greater insight into citation behavior.

  19. Multi-Layer Identification of Highly-Potent ABCA1 Up-Regulators Targeting LXRβ Using Multiple QSAR Modeling, Structural Similarity Analysis, and Molecular Docking

    Directory of Open Access Journals (Sweden)

    Meimei Chen

    2016-11-01

    Full Text Available In this study, in silico approaches, including multiple QSAR modeling, structural similarity analysis, and molecular docking, were applied to develop QSAR classification models as a fast screening tool for identifying highly-potent ABCA1 up-regulators targeting LXRβ based on a series of new flavonoids. Initially, four modeling approaches, including linear discriminant analysis, support vector machine, radial basis function neural network, and classification and regression trees, were applied to construct different QSAR classification models. The statistics results indicated that these four kinds of QSAR models were powerful tools for screening highly potent ABCA1 up-regulators. Then, a consensus QSAR model was developed by combining the predictions from these four models. To discover new ABCA1 up-regulators at maximum accuracy, the compounds in the ZINC database that fulfilled the requirement of structural similarity of 0.7 compared to known potent ABCA1 up-regulator were subjected to the consensus QSAR model, which led to the discovery of 50 compounds. Finally, they were docked into the LXRβ binding site to understand their role in up-regulating ABCA1 expression. The excellent binding modes and docking scores of 10 hit compounds suggested they were highly-potent ABCA1 up-regulators targeting LXRβ. Overall, this study provided an effective strategy to discover highly potent ABCA1 up-regulators.

  20. Multi-Layer Identification of Highly-Potent ABCA1 Up-Regulators Targeting LXRβ Using Multiple QSAR Modeling, Structural Similarity Analysis, and Molecular Docking.

    Science.gov (United States)

    Chen, Meimei; Yang, Fafu; Kang, Jie; Yang, Xuemei; Lai, Xinmei; Gao, Yuxing

    2016-11-29

    In this study, in silico approaches, including multiple QSAR modeling, structural similarity analysis, and molecular docking, were applied to develop QSAR classification models as a fast screening tool for identifying highly-potent ABCA1 up-regulators targeting LXRβ based on a series of new flavonoids. Initially, four modeling approaches, including linear discriminant analysis, support vector machine, radial basis function neural network, and classification and regression trees, were applied to construct different QSAR classification models. The statistics results indicated that these four kinds of QSAR models were powerful tools for screening highly potent ABCA1 up-regulators. Then, a consensus QSAR model was developed by combining the predictions from these four models. To discover new ABCA1 up-regulators at maximum accuracy, the compounds in the ZINC database that fulfilled the requirement of structural similarity of 0.7 compared to known potent ABCA1 up-regulator were subjected to the consensus QSAR model, which led to the discovery of 50 compounds. Finally, they were docked into the LXRβ binding site to understand their role in up-regulating ABCA1 expression. The excellent binding modes and docking scores of 10 hit compounds suggested they were highly-potent ABCA1 up-regulators targeting LXRβ. Overall, this study provided an effective strategy to discover highly potent ABCA1 up-regulators.

  1. Measuring the Value of Research Data: A Citation Analysis of Oceanographic Data Sets

    Science.gov (United States)

    Belter, Christopher W.

    2014-01-01

    Evaluation of scientific research is becoming increasingly reliant on publication-based bibliometric indicators, which may result in the devaluation of other scientific activities - such as data curation – that do not necessarily result in the production of scientific publications. This issue may undermine the movement to openly share and cite data sets in scientific publications because researchers are unlikely to devote the effort necessary to curate their research data if they are unlikely to receive credit for doing so. This analysis attempts to demonstrate the bibliometric impact of properly curated and openly accessible data sets by attempting to generate citation counts for three data sets archived at the National Oceanographic Data Center. My findings suggest that all three data sets are highly cited, with estimated citation counts in most cases higher than 99% of all the journal articles published in Oceanography during the same years. I also find that methods of citing and referring to these data sets in scientific publications are highly inconsistent, despite the fact that a formal citation format is suggested for each data set. These findings have important implications for developing a data citation format, encouraging researchers to properly curate their research data, and evaluating the bibliometric impact of individuals and institutions. PMID:24671177

  2. Measuring the value of research data: a citation analysis of oceanographic data sets.

    Science.gov (United States)

    Belter, Christopher W

    2014-01-01

    Evaluation of scientific research is becoming increasingly reliant on publication-based bibliometric indicators, which may result in the devaluation of other scientific activities--such as data curation--that do not necessarily result in the production of scientific publications. This issue may undermine the movement to openly share and cite data sets in scientific publications because researchers are unlikely to devote the effort necessary to curate their research data if they are unlikely to receive credit for doing so. This analysis attempts to demonstrate the bibliometric impact of properly curated and openly accessible data sets by attempting to generate citation counts for three data sets archived at the National Oceanographic Data Center. My findings suggest that all three data sets are highly cited, with estimated citation counts in most cases higher than 99% of all the journal articles published in Oceanography during the same years. I also find that methods of citing and referring to these data sets in scientific publications are highly inconsistent, despite the fact that a formal citation format is suggested for each data set. These findings have important implications for developing a data citation format, encouraging researchers to properly curate their research data, and evaluating the bibliometric impact of individuals and institutions.

  3. High similarity between flanking regions of different microsatellites detected within each of two species of Lepidoptera: Parnassius apollo and Euphydryas aurinia.

    Science.gov (United States)

    Meglecz, Emese; Petenian, Frederic; Danchin, Etienne; D'Acier, Armelle Coeur; Rasplus, Jean-Yves; Faure, Eric

    2004-06-01

    Microsatellite flanking regions have been compared in two butterfly species. Several microsatellite flanking regions showed high similarity to one another among different microsatellites within a same species, but very few similarities were found between species. This can be the consequence of either duplication/multiplication events involving large regions containing microsatellites or of microsatellites imbedded in minisatellite regions. The multiplication of microsatellites might also be linked to mobile elements. Furthermore, crossing over between nonhomologous microsatellites can lead to the exchange of the flanking regions between microsatellites. The same phenomenon was observed in both studied butterfly species but not in Aphis fabae (Hemiptera), which was screened at the same time using the same protocol. These findings might explain, at least partially, why microsatellite isolation in Lepidoptera has been relatively unsuccessful so far.

  4. Two highly similar LAEDDTNAQKT and LTDKIGTEI epitopes in G glycoprotein may be useful for effective epitope based vaccine design against pathogenic Henipavirus.

    Science.gov (United States)

    Parvege, Md Masud; Rahman, Monzilur; Nibir, Yead Morshed; Hossain, Mohammad Shahnoor

    2016-04-01

    Nipah virus and Hendra virus, two members of the genus Henipavirus, are newly emerging zoonotic pathogens which cause acute respiratory illness and severe encephalitis in human. Lack of the effective antiviral therapy endorses the urgency for the development of vaccine against these deadly viruses. In this study, we employed various computational approaches to identify epitopes which has the potential for vaccine development. By analyzing the immune parameters of the conserved sequences of G glycoprotein using various databases and bioinformatics tools, we identified two potential epitopes which may be used as peptide vaccines. Using different B cell epitope prediction servers, four highly similar B cell epitopes were identified. Immunoinformatics analyses revealed that LAEDDTNAQKT is a highly flexible and accessible B-cell epitope to antibody. Highly similar putative CTL epitopes were analyzed for their binding with the HLA-C 12*03 molecule. Docking simulation assay revealed that LTDKIGTEI has significantly lower binding energy, which bolstered its potential as epitope-based vaccine design. Finally, cytotoxicity analysis has also justified their potential as promising epitope-based vaccine candidate. In sum, our computational analysis indicates that either LAEDDTNAQKT or LTDKIGTEI epitope holds a promise for the development of universal vaccine against all kinds of pathogenic Henipavirus. Further in vivo and in vitro studies are necessary to validate the obtained findings. Copyright © 2016. Published by Elsevier Ltd.

  5. Similarity, Clustering, and Scaling Analyses for the Foreign Exchange Market ---Comprehensive Analysis on States of Market Participants with High-Frequency Financial Data---

    Science.gov (United States)

    Sato, A.; Sakai, H.; Nishimura, M.; Holyst, J. A.

    This article proposes mathematical methods to quantify states of marketparticipants in the foreign exchange market (FX market) and conduct comprehensive analysis on behavior of market participants by means of high-frequency financial data. Based on econophysics tools and perspectives we study similarity measures for both rate movements and quotation activities among various currency pairs. We perform also clustering analysis on market states for observation days, and find scaling relationship between mean values of quotation activities and their standard deviations. Using these mathematical methods we can visualize states of the FX market comprehensively. Finally we conclude that states of market participants temporally vary due to both external and internal factors.

  6. Studies Related to the Oregon State University High Temperature Test Facility: Scaling, the Validation Matrix, and Similarities to the Modular High Temperature Gas-Cooled Reactor

    Energy Technology Data Exchange (ETDEWEB)

    Richard R. Schultz; Paul D. Bayless; Richard W. Johnson; William T. Taitano; James R. Wolf; Glenn E. McCreery

    2010-09-01

    The Oregon State University (OSU) High Temperature Test Facility (HTTF) is an integral experimental facility that will be constructed on the OSU campus in Corvallis, Oregon. The HTTF project was initiated, by the U.S. Nuclear Regulatory Commission (NRC), on September 5, 2008 as Task 4 of the 5 year High Temperature Gas Reactor Cooperative Agreement via NRC Contract 04-08-138. Until August, 2010, when a DOE contract was initiated to fund additional capabilities for the HTTF project, all of the funding support for the HTTF was provided by the NRC via their cooperative agreement. The U.S. Department of Energy (DOE) began their involvement with the HTTF project in late 2009 via the Next Generation Nuclear Plant project. Because the NRC interests in HTTF experiments were only centered on the depressurized conduction cooldown (DCC) scenario, NGNP involvement focused on expanding the experimental envelope of the HTTF to include steady-state operations and also the pressurized conduction cooldown (PCC). Since DOE has incorporated the HTTF as an ingredient in the NGNP thermal-fluids validation program, several important outcomes should be noted: 1. The reference prismatic reactor design, that serves as the basis for scaling the HTTF, became the modular high temperature gas-cooled reactor (MHTGR). The MHTGR has also been chosen as the reference design for all of the other NGNP thermal-fluid experiments. 2. The NGNP validation matrix is being planned using the same scaling strategy that has been implemented to design the HTTF, i.e., the hierarchical two-tiered scaling methodology developed by Zuber in 1991. Using this approach a preliminary validation matrix has been designed that integrates the HTTF experiments with the other experiments planned for the NGNP thermal-fluids verification and validation project. 3. Initial analyses showed that the inherent power capability of the OSU infrastructure, which only allowed a total operational facility power capability of 0.6 MW, is

  7. Context Sensitive Article Ranking with Citation Context Analysis

    CERN Document Server

    Doslu, Metin

    2015-01-01

    It is hard to detect important articles in a specific context. Information retrieval techniques based on full text search can be inaccurate to identify main topics and they are not able to provide an indication about the importance of the article. Generating a citation network is a good way to find most popular articles but this approach is not context aware. The text around a citation mark is generally a good summary of the referred article. So citation context analysis presents an opportunity to use the wisdom of crowd for detecting important articles in a context sensitive way. In this work, we analyze citation contexts to rank articles properly for a given topic. The model proposed uses citation contexts in order to create a directed and weighted citation network based on the target topic. We create a directed and weighted edge between two articles if citation context contains terms related with the target topic. Then we apply common ranking algorithms in order to find important articles in this newly cre...

  8. Citation Index: an indispensable information retrieval tool for research and evaluation

    OpenAIRE

    Kademani, B. S.; Vijai Kumar, *

    2002-01-01

    This paper highlights the information explosion, the need for bibliographic control, the need for information retrieval tools. Explains the emergence of Citation Index, concept of citation indexing, reasons for citing, its structure (print and electronic versions of Science citation Index and Social Science Citation Index ), and application of citation index. It also discusses the search effectiveness, factors taken into consideration for coverage of journals in citation indexes, Journal Cita...

  9. Both food restriction and high-fat diet during gestation induce low birth weight and altered physical activity in adult rat offspring: the "Similarities in the Inequalities" model.

    Science.gov (United States)

    Cunha, Fábio da Silva; Dalle Molle, Roberta; Portella, André Krumel; Benetti, Carla da Silva; Noschang, Cristie; Goldani, Marcelo Zubaran; Silveira, Patrícia Pelufo

    2015-01-01

    We have previously described a theoretical model in humans, called "Similarities in the Inequalities", in which extremely unequal social backgrounds coexist in a complex scenario promoting similar health outcomes in adulthood. Based on the potential applicability of and to further explore the "similarities in the inequalities" phenomenon, this study used a rat model to investigate the effect of different nutritional backgrounds during gestation on the willingness of offspring to engage in physical activity in adulthood. Sprague-Dawley rats were time mated and randomly allocated to one of three dietary groups: Control (Adlib), receiving standard laboratory chow ad libitum; 50% food restricted (FR), receiving 50% of the ad libitum-fed dam's habitual intake; or high-fat diet (HF), receiving a diet containing 23% fat. The diets were provided from day 10 of pregnancy until weaning. Within 24 hours of birth, pups were cross-fostered to other dams, forming the following groups: Adlib_Adlib, FR_Adlib, and HF_Adlib. Maternal chow consumption and weight gain, and offspring birth weight, growth, physical activity (one week of free exercise in running wheels), abdominal adiposity and biochemical data were evaluated. Western blot was performed to assess D2 receptors in the dorsal striatum. The "similarities in the inequalities" effect was observed on birth weight (both FR and HF groups were smaller than the Adlib group at birth) and physical activity (both FR_Adlib and HF_Adlib groups were different from the Adlib_Adlib group, with less active males and more active females). Our findings contribute to the view that health inequalities in fetal life may program the health outcomes manifested in offspring adult life (such as altered physical activity and metabolic parameters), probably through different biological mechanisms.

  10. Both food restriction and high-fat diet during gestation induce low birth weight and altered physical activity in adult rat offspring: the "Similarities in the Inequalities" model.

    Directory of Open Access Journals (Sweden)

    Fábio da Silva Cunha

    Full Text Available We have previously described a theoretical model in humans, called "Similarities in the Inequalities", in which extremely unequal social backgrounds coexist in a complex scenario promoting similar health outcomes in adulthood. Based on the potential applicability of and to further explore the "similarities in the inequalities" phenomenon, this study used a rat model to investigate the effect of different nutritional backgrounds during gestation on the willingness of offspring to engage in physical activity in adulthood. Sprague-Dawley rats were time mated and randomly allocated to one of three dietary groups: Control (Adlib, receiving standard laboratory chow ad libitum; 50% food restricted (FR, receiving 50% of the ad libitum-fed dam's habitual intake; or high-fat diet (HF, receiving a diet containing 23% fat. The diets were provided from day 10 of pregnancy until weaning. Within 24 hours of birth, pups were cross-fostered to other dams, forming the following groups: Adlib_Adlib, FR_Adlib, and HF_Adlib. Maternal chow consumption and weight gain, and offspring birth weight, growth, physical activity (one week of free exercise in running wheels, abdominal adiposity and biochemical data were evaluated. Western blot was performed to assess D2 receptors in the dorsal striatum. The "similarities in the inequalities" effect was observed on birth weight (both FR and HF groups were smaller than the Adlib group at birth and physical activity (both FR_Adlib and HF_Adlib groups were different from the Adlib_Adlib group, with less active males and more active females. Our findings contribute to the view that health inequalities in fetal life may program the health outcomes manifested in offspring adult life (such as altered physical activity and metabolic parameters, probably through different biological mechanisms.

  11. Does Interdisciplinary Research Lead to Higher Citation Impact? The Different Effect of Proximal and Distal Interdisciplinarity

    Science.gov (United States)

    Yegros-Yegros, Alfredo; Rafols, Ismael; D’Este, Pablo

    2015-01-01

    This article analyses the effect of degree of interdisciplinarity on the citation impact of individual publications for four different scientific fields. We operationalise interdisciplinarity as disciplinary diversity in the references of a publication, and rather than treating interdisciplinarity as a monodimensional property, we investigate the separate effect of different aspects of diversity on citation impact: i.e. variety, balance and disparity. We use a Tobit regression model to examine the effect of these properties of interdisciplinarity on citation impact, controlling for a range of variables associated with the characteristics of publications. We find that variety has a positive effect on impact, whereas balance and disparity have a negative effect. Our results further qualify the separate effect of these three aspects of diversity by pointing out that all three dimensions of interdisciplinarity display a curvilinear (inverted U-shape) relationship with citation impact. These findings can be interpreted in two different ways. On the one hand, they are consistent with the view that, while combining multiple fields has a positive effect in knowledge creation, successful research is better achieved through research efforts that draw on a relatively proximal range of fields, as distal interdisciplinary research might be too risky and more likely to fail. On the other hand, these results may be interpreted as suggesting that scientific audiences are reluctant to cite heterodox papers that mix highly disparate bodies of knowledge—thus giving less credit to publications that are too groundbreaking or challenging. PMID:26266805

  12. Evaluation of the current state of mechanistic aquatic biogeochemical modeling: citation analysis and future perspectives.

    Science.gov (United States)

    Arhonditsis, George B; Adams-Vanharn, Barbara A; Nielsen, Leah; Stow, Craig A; Reckhow, Kenneth H

    2006-11-01

    We examined the factors that determine the citations of 153 mechanistic aquatic biogeochemical modeling papers published from 1990 to 2002. Our analysis provides overwhelming evidence that ocean modeling is a dynamic area of the current modeling practice. Models developed to gain insight into the ocean carbon cycle/marine biogeochemistry are most highly cited, the produced knowledge is exported to other cognitive disciplines, and oceanic modelers are less reluctant to embrace technical advances (e.g., assimilation schemes) and more critically increase model complexity. Contrary to our predictions, model application for environmental management issues on a local scale seems to have languished; the pertinent papers comprise a smaller portion of the published modeling literature and receive lower citations. Given the critical planning information that these models aim to provide, we hypothesize that the latter finding probably stems from conceptual weaknesses, methodological omissions, and an evident lack of haste from modelers to adopt new ideas in their repertoire when addressing environmental management issues. We also highlight the lack of significant association between citation frequency and model complexity, model performance, implementation of conventional methodological steps during model development (e.g., validation, sensitivity analysis), number of authors, and country of affiliation. While these results cast doubt on the rationale of the current modeling practice, the fact that the Fasham et al. (1990) paper has received over 400 citations probably dictates what should be done from the modeling community to meet the practical need for attractive and powerful modeling tools.

  13. Evaluation of citations of Russian publications in the world patent documents

    Directory of Open Access Journals (Sweden)

    L. A. Tsvetkova

    2017-01-01

    Full Text Available According to the European patent agency, 15% of the references in the patent search reports are so-called non-patent literature (NPL, which refer to scientific publications not related to the patents. An included overview of research proves that a high level of NPL citation indicates a research intensity of technical solutions proposed by the patent. There has been evaluated the level of citation of Russian scientific publications, indexed in Scopus, in patent documents with cross-country comparisons. It has shown by the indicator «number of citations of national publications patents» Russian Federation is almost 87 times inferior to the United States and more than ten times worse than the performance of Japan, China, and Germany. The indicator «number of citations in patents per 1,000 publications» for Russia is (4,9 less than for Turkish (5,4, Argentine (8,5, Mexican (7,0 and South African publications (7,6. Publications of Qatar, Saudi Arabia, and Egypt also have a substantially higher value of this indicator: with 8,0 to 15,3 and 9,5, respectively.

  14. Citation indexing and evaluation of scientific papers.

    Science.gov (United States)

    Margolis, J

    1967-03-10

    Evaluation by means of citation patterns can be successful only insofar as published papers and their bibliographies reflect scientific activity and nothing else. Such an innocent descrip tion is becoming less and less tenable. The present scientific explosion gave rise to more than a proportional pub lication explosion, which not only re flects the scientific explosion but has its own dynamics and vicious circles. Publication of results is probably the main means of accomplishing the al most impossible task of accounting for time and money spent on research. Inevitably, this puts a premium on quantity at the expense of quality, and, as with any other type of inflation, the problem worsens: the more papers are written, the less they count for and the greater is the pressure to publish more. What makes matters worse is the fact that the sheer volume of the"litera ture" makes it increasingly difficult to separate what is worthwhile from the rest. Critical reviews have become somewhat of a rarity, and editorial judgment is usually relegated to ref erees, who are contemporaries and, per haps, competitors of the authors-a situation which has its own undesirable implications (11, 18). It requires little imagination to discover other vicious circles, all arising from distortion of the primary reasons for publishing the results of scientific inquiry. There are, it is true, signs of ad justment to this crisis, partly due to some easing of the pressure to pub lish at all costs, and partly due to the readers' changing attitudes toward the flood of publications. An increasing amount of research is now being car ried out in the form of collective proj ects in large institutions where publica tion is no longer the standard method of accounting for individual work. At the same time there is apparent an in creasing tendency for scientific journals to polarize into the relatively few leading ones which carry important informa tion and the many subsidiary journals which serve as

  15. Quantitative assessment of similarity between randomly acquired characteristics on high quality exemplars and crime scene impressions via analysis of feature size and shape.

    Science.gov (United States)

    Richetelli, Nicole; Nobel, Madonna; Bodziak, William J; Speir, Jacqueline A

    2017-01-01

    Forensic footwear evidence can prove invaluable to the resolution of a criminal investigation. Naturally, the value of a comparison varies with the rarity of the evidence, which is a function of both manufactured as well as randomly acquired characteristics (RACs). When focused specifically on the latter of these two types of features, empirical evidence demonstrates high discriminating power for the differentiation of known match and known non-match samples when presented with exemplars of high quality and exhibiting a sufficient number of clear and complex RACs. However, given the dynamic and unpredictable nature of the media, substrate, and deposition process encountered during the commission of a crime, RACs on crime scene prints are expected to exhibit a large range of variability in terms of reproducibility, clarity, and quality. Although the pattern recognition skill of the expert examiner is adept at recognizing and evaluating this type of natural variation, there is little research to suggest that objective and numerical metrics can globally process this variation when presented with RACs from degraded crime scene quality prints. As such, the goal of this study was to mathematically compare the loss and similarity of RACs in high quality exemplars versus crime-scene-like quality impressions as a function of RAC shape, perimeter, area, and common source. Results indicate that the unpredictable conditions associated with crime scene print production promotes RAC loss that varies between 33% and 100% with an average of 85%, and that when the entire outsole is taken as a constellation of features (or a RAC map), 64% of the crime-scene-like impressions exhibited 10 or fewer RACs, resulting in a 0.72 probability of stochastic dominance. Given this, individual RAC description and correspondence were further explored using five simple, but objective, numerical metrics of similarity. Statistically significant differences in similarity scores for RAC shape and size

  16. Scopus’s Source Normalized Impact per Paper (SNIP) versus a Journal Impact Factor based on Fractional Counting of Citations

    NARCIS (Netherlands)

    Leydesdorff, L.; Opthof, T.

    2010-01-01

    Impact factors (and similar measures such as the Scimago Journal Rankings) suffer from two problems: (a) citation behavior varies among fields of science and, therefore, leads to systematic differences, and (b) there are no statistics to inform us whether differences are significant. The recently

  17. Scopus's Source Normalized Impact per Paper (SNIP) Versus a Journal Impact Factor Based on Fractional Counting of Citations

    NARCIS (Netherlands)

    Leydesdorff, Loet; Opthof, Tobias

    2010-01-01

    Impact factors (and similar measures such as the Scimago Journal Rankings) suffer from two problems: (a) citation behavior varies among fields of science and, therefore, leads to systematic differences, and (b) there are no statistics to inform us whether differences are significant. The recently

  18. From abstract to impact in cardiovascular research: factors predicting publication and citation

    Science.gov (United States)

    Winnik, Stephan; Raptis, Dimitri A.; Walker, Janina H.; Hasun, Matthias; Speer, Thimotheus; Clavien, Pierre-Alain; Komajda, Michel; Bax, Jeroen J.; Tendera, Michal; Fox, Kim; Van de Werf, Frans; Mundow, Ciara; Lüscher, Thomas F.; Ruschitzka, Frank; Matter, Christian M.

    2012-01-01

    Aims Through a 4-year follow-up of the abstracts submitted to the European Society of Cardiology Congress in 2006, we aimed at identifying factors predicting high-quality research, appraising the quality of the peer review and editorial processes, and thereby revealing potential ways to improve future research, peer review, and editorial work. Methods and results All abstracts submitted in 2006 were assessed for acceptance, presentation format, and average reviewer rating. Accepted and rejected studies were followed for 4 years. Multivariate regression analyses of a representative selection of 10% of all abstracts (n= 1002) were performed to identify factors predicting acceptance, subsequent publication, and citation. A total of 10 020 abstracts were submitted, 3104 (31%) were accepted for poster, and 701 (7%) for oral presentation. At Congress level, basic research, a patient number ≥ 100, and prospective study design were identified as independent predictors of acceptance. These factors differed from those predicting full-text publication, which included academic affiliation. The single parameter predicting frequent citation was study design with randomized controlled trials reaching the highest citation rates. The publication rate of accepted studies was 38%, whereas only 24% of rejected studies were published. Among published studies, those accepted at the Congress received higher citation rates than rejected ones. Conclusions Research of high quality was determined by study design and largely identified at Congress level through blinded peer review. The scientometric follow-up revealed a marked disparity between predictors of full-text publication and those predicting citation or acceptance at the Congress. PMID:22669850

  19. Blog Citations as Indicators of the Societal Impact of Research : Content Analysis of Social Sciences Blogs

    Directory of Open Access Journals (Sweden)

    Hamid R. Jamali

    2015-06-01

    Full Text Available This article analyzes motivations behind social sciences blog posts citing journal articles in order to find out whether blog citations are good indicators for the societal impact or benefits of research. A random sample of 300 social sciences blog posts (out of 1,233 blog posts from ResearchBlogging.org published between 01/01/2012 to 18/06/2014 were subjected to content analysis. The 300 blog posts had 472 references including 424 journal articles from 269 different journals. Sixty‐one (22.68% of all cited journals were from the social sciences and most of the journals with high frequency were highly cited general science journals such as PNAS and Science. Seventy‐five percent of all journals were referenced only once. The average age of articles cited at the time of citation was 5.8 years. Discussion and criticism were the two main categories of motivations. Overall, the study shows the potential of blog citations as an altmetric measure and as a proxy for assessing the research impact. A considerable number of citation motivations in blogs such as disputing a belief, suggesting policies, providing a solution to a problem, reacting to media, criticism and the like seemed to support gaining societal benefits. Societal benefits are considered as helping stimulate new approaches to social issues, or informing public debate and policymaking. Lower self‐citation (compared to some other altmetric measures such as tweets and the fact that blogging involves generating content (i.e. an intellectual process give them an advantage for altmetrics. However, limitations and contextual issues such as disciplinary differences and low uptake of altmetrics, in general, in scholarly communication should not be ignored when using blogs as a data source for altmetrics.

  20. Pubertally Initiated High-Fat Diet Promotes Mammary Tumorigenesis in Obesity-Prone FVB Mice Similarly to Obesity-Resistant BALB/c Mice

    Directory of Open Access Journals (Sweden)

    Yirong Zhu

    2017-12-01

    Full Text Available Premenopausal breast cancer is associated with increased animal fat consumption among normal-weight but not overweight women. Our previous findings in obesity-resistant BALB/c mice showed that a diet high in saturated animal fat (HFD promotes mammary tumorigenesis in both DMBA carcinogenesis and Trp53-null transplant models. Having made these observations in BALB/c mice, which have very modest HFD weight gain, we determined the effects of HFD in FVB mice, which gain significant weight on HFD. Three-week-old FVB mice fed a low-fat diet or HFD were subjected to 7,12-dimethylbenz[a]anthracene-induced carcinogenesis. Like BALB/c mice, HFD promoted mammary tumorigenesis. Development of tumors largely occurred prior to mice becoming obese, indicating the role of animal-derived HFD rather than resulting obesity in tumor promotion. Also similar to BALB/c mice, early-occurring adenosquamous mammary tumors were abundant among HFD-fed FVB mice. Tumors from HFD mice also had increased intra-tumor M2 macrophages. Prior to tumor development, HFD accelerated normal mammary gland development and increased mammary M2 macrophages, similarly to BALB/c mice. The promotional effects of puberty-initiated HFD on carcinogen-induced mammary cancer are thus largely weight gain-independent. Like BALB/c mice, HFD promoted adenosquamous tumors, suggesting a role for early age HFD in promoting this subtype of triple negative mammary cancer. M2 macrophage recruitment was common to both mouse strains. We speculate that a similar effect of HFD on immune function may contribute to epidemiological findings of increased breast cancer risk in young, premenopausal, normal-weight women who consume a diet high in saturated animal fat.

  1. Hybrid self-optimized clustering model based on citation links and textual features to detect research topics.

    Directory of Open Access Journals (Sweden)

    Dejian Yu

    Full Text Available The challenge of detecting research topics in a specific research field has attracted attention from researchers in the bibliometrics community. In this study, to solve two problems of clustering papers, i.e., the influence of different distributions of citation links and involved textual features on similarity computation, the authors propose a hybrid self-optimized clustering model to detect research topics by extending the hybrid clustering model to identify "core documents". First, the Amsler network, consisting of bibliographic coupling and co-citation links, is created to calculate the citation-based similarity based on the cosine angle of papers. Second, the cosine similarity is also used to compute the text-based similarity, which consists of the textual statistical and topological features. Then, the cosine angle of the linear combination of citation- and text-based similarity is considered as the hybrid similarity. Finally, the Louvain method is applied to cluster papers, and the terms based on term frequency are used to label clusters. To test the performance of the proposed model, a dataset related to the data envelopment analysis field is used for comparison and analysis of clustering results. Based on the benchmark built, different clustering methods with different citation links or textual features are compared according to evaluation measures. The results show that the proposed model can obtain reasonable and effective clustering results, and the research topics of data envelopment analysis field are also analyzed based on the proposed model. As different features are considered in the proposed model compared with previous hybrid clustering models, the proposed clustering model can provide inspiration for further studies on topic identification by other researchers.

  2. Hybrid self-optimized clustering model based on citation links and textual features to detect research topics.

    Science.gov (United States)

    Yu, Dejian; Wang, Wanru; Zhang, Shuai; Zhang, Wenyu; Liu, Rongyu

    2017-01-01

    The challenge of detecting research topics in a specific research field has attracted attention from researchers in the bibliometrics community. In this study, to solve two problems of clustering papers, i.e., the influence of different distributions of citation links and involved textual features on similarity computation, the authors propose a hybrid self-optimized clustering model to detect research topics by extending the hybrid clustering model to identify "core documents". First, the Amsler network, consisting of bibliographic coupling and co-citation links, is created to calculate the citation-based similarity based on the cosine angle of papers. Second, the cosine similarity is also used to compute the text-based similarity, which consists of the textual statistical and topological features. Then, the cosine angle of the linear combination of citation- and text-based similarity is considered as the hybrid similarity. Finally, the Louvain method is applied to cluster papers, and the terms based on term frequency are used to label clusters. To test the performance of the proposed model, a dataset related to the data envelopment analysis field is used for comparison and analysis of clustering results. Based on the benchmark built, different clustering methods with different citation links or textual features are compared according to evaluation measures. The results show that the proposed model can obtain reasonable and effective clustering results, and the research topics of data envelopment analysis field are also analyzed based on the proposed model. As different features are considered in the proposed model compared with previous hybrid clustering models, the proposed clustering model can provide inspiration for further studies on topic identification by other researchers.

  3. CD and NMR investigation of collagen peptides mimicking a pathological Gly-Ser mutation and a natural interruption in a similar highly charged sequence context.

    Science.gov (United States)

    Sun, Xiuxia; Liu, Songqing; Yu, Wenyuan; Wang, Shaoru; Xiao, Jianxi

    2016-02-01

    Even a single Gly substitution in the triple helix domain of collagen leads to pathological conditions while natural interruptions are suggested to play important functional roles. Two peptides-one mimicking a pathological Gly-Ser substitution (ERSEQ) and the other one modeling a similar natural interruption sequence (DRSER)-are designed to facilitate the comparison for elucidating the molecular basis of their different biological roles. CD and NMR investigation of peptide ERSEQ indicates a reduction of the thermal stability and disruption of hydrogen bonding at the Ser mutation site, providing a structural basis of the OI disease resulting from the Gly-Ser mutation in the highly charged RGE environment. Both CD and NMR real-time folding results indicate that peptide ERSEQ displays a comparatively slower folding rate than peptide DRSER, suggesting that the Gly-Ser mutation may lead to a larger interference in folding than the natural interruption in a similar RSE context. Our studies suggest that unlike the rigid GPO environment, the abundant R(K)GE(D) motif may provide a more flexible sequence environment that better accommodates mutations as well as interruptions, while the electrostatic interactions contribute to its stability. These results shed insight into the molecular features of the highly charged motif and may aid the design of collagen biomimetic peptides containing important biological sites. © 2015 The Protein Society.

  4. Homo Citans and Carbon Allotropes: For an Ethics of Citation.

    Science.gov (United States)

    Hoffmann, Roald; Kabanov, Artyom A; Golov, Andrey A; Proserpio, Davide M

    2016-09-05

    Cite we must, cite we do. We cite because we are links in a chain, using properties and methods validated by others. We also cite to negotiate the anxiety of influence. And to be fair. After outlining the reasons for citation, we use two case studies of citation amnesia in the field of hypothetical carbon allotropes to present a computer-age search tool (SACADA) in that subsubfield. Finally, we advise on good search practice, including what to do if you miss a citation. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  5. Hybrid approach combining contextual and statistical information for identifying MEDLINE citation terms

    Science.gov (United States)

    Kim, In Cheol; Le, Daniel X.; Thoma, George R.

    2008-01-01

    There is a strong demand for developing automated tools for extracting pertinent information from the biomedical literature that is a rich, complex, and dramatically growing resource, and is increasingly accessed via the web. This paper presents a hybrid method based on contextual and statistical information to automatically identify two MEDLINE citation terms: NIH grant numbers and databank accession numbers from HTML-formatted online biomedical documents. Their detection is challenging due to many variations and inconsistencies in their format (although recommended formats exist), and also because of their similarity to other technical or biological terms. Our proposed method first extracts potential candidates for these terms using a rule-based method. These are scored and the final candidates are submitted to a human operator for verification. The confidence score for each term is calculated using statistical information, and morphological and contextual information. Experiments conducted on more than ten thousand HTML-formatted online biomedical documents show that most NIH grant numbers and databank accession numbers can be successfully identified by the proposed method, with recall rates of 99.8% and 99.6%, respectively. However, owing to the high false alarm rate, the proposed method yields F-measure rates of 86.6% and 87.9% for NIH grants and databanks, respectively.

  6. CITATION PRACTICES AND ACADEMIC PLAGIARISM IN THE TEXTUAL ELABORATION OF UNIVERSITY STUDENTS

    Directory of Open Access Journals (Sweden)

    Rubén Comas Forgas

    2011-04-01

    Full Text Available Locate, evaluate, manage and communicate information in writing academic essays have become basic skills that university students should possess. This article presents the results of a descriptive study developed by survey with a sample of 1.025 under-graduate students at the University of the Balearic Islands on the prevalence in the practice of citation and plagiarism when preparing essays. It should be highlighted from the results obtained, on the one hand, the fact that much of the students or directly do not quote resources used in the preparation of their work or do so sporadically or infrequently. Concerning the commission of plagiarism, the percentage of students who admitted carrying out this type of practice is certainly high. Based on these data, as well as those of other studies with similar characteristics, the authors propose, first, the need for increased research efforts to assess and understand the causes of the situation described and, secondly, advocate for the provision and implementation of training initiatives to improve the situation described.

  7. Hypoxemic Patients With Bilateral Infiltrates Treated With High-Flow Nasal Cannula Present a Similar Pattern of Biomarkers of Inflammation and Injury to Acute Respiratory Distress Syndrome Patients.

    Science.gov (United States)

    García-de-Acilu, Marina; Marin-Corral, Judith; Vázquez, Antonia; Ruano, Laura; Magret, Mònica; Ferrer, Ricard; Masclans, Joan R; Roca, Oriol

    2017-11-01

    To examine whether patients with acute hypoxemia and bilateral opacities treated with high-flow nasal cannula and acute respiratory distress syndrome patients who were directly mechanically ventilated are similar in terms of lung epithelial, endothelial, and inflammatory biomarkers. Prospective, multicenter study. ICUs at three university tertiary hospitals. Intubated and nonintubated patients admitted to the ICU with acute hypoxemia (PaO2/FIO2 ≤ 300) and bilateral opacities. None. Either high-flow nasal cannula or mechanical ventilation was initiated, at the discretion of the attending physician. We measured plasma biomarkers of lung epithelial injury (receptor for advanced glycation end products and surfactant protein D) and endothelial injury (angiopoietin-2) and inflammation (interleukin-6, interleukin-8, and interleukin-33 and soluble suppression of tumorigenicity-2) within 24 hours of acute respiratory distress syndrome onset. Propensity score matching was performed using six different variables (Acute Physiology and Chronic Health Evaluation II, Sequential Organ Failure Assessment, PaO2/FIO2, origin of acute respiratory distress syndrome, steroids, renal failure and need for vasopressors). Nonhypoxemic mechanically ventilated critically ill patients and healthy volunteers served as controls. Of the 170 patients enrolled, 127 (74.7%) were intubated and 43 (25.3%) were treated with high-flow nasal cannula at acute respiratory distress syndrome onset. After propensity score matching (39 high-flow nasal cannula patients vs 39 mechanical ventilation patients), no significant differences were observed in receptor for advanced glycation end products, surfactant protein D, angiopoietin-2, interleukin-6, interleukin-8, interleukin-33, and soluble suppression of tumorigenicity-2 between matched patients who were treated with high-flow nasal cannula and those who were intubated at acute respiratory distress syndrome onset. After matching, no differences in mortality

  8. Analysis of status of citation of articles published in the Medical Journal of Chinese PLA from 2000 to 2009

    Directory of Open Access Journals (Sweden)

    Xiao-yan ZHANG

    2012-12-01

    Full Text Available Objective  Based on the status of citation of articles published in Medical Journal of Chinese PLA, to analyze the academic value of the Medical Journal of Chinese PLA, and provide information for assessing dominant medical disciplines and major groups of contributors, and for appraisal of outstanding articles. Methods  The journal citation data were obtained from the China Academic Journal Network Publishing Database(CAJD. The individual citation data of the scientific articles published in Medical Journal of Chinese PLAfrom 2000 to 2009 were retrieved from CAJD. Articles with citation frequency equal to or higher than 30 times were collected for analysis, and they were defined as highly cited articles. Based on these highly cited articles, we analyzed the authors' institutions, research discipline distribution and types of research projects. We also made a vertical comparison of average citation frequency in every year. Results  The total number of articles with citation frequency equal to or higher than 30 times was 50. The yearly average citation frequency increased year by year, from 0.05 times in the year 2000 to 4.46 times in the year 2009. Distribution of authors and institutions was as follows: authors of 11 articles were working in General Hospital of Chinese PLA and 302 Hospital of PLA respectively, authors of 6 articles were working in the Second Military Medical University, 5 in the First Military Medical University and Third Military Medical University, respectively, 4 in 304 Hospital of Chinese PLA. The articles from these 6 institutions accounted for 84% of all highly cited articles. Research fields distribution were as follows: 12 articles in infectious diseases, 7 in field surgery, 6 in trauma and burns. The articles in these 3 fields accounted for 50% of all highly cited articles. Research types were as follows: 20 articles of experimental research, 11 clinical research, 9 literature review, 8 expert forums and 2 dealing

  9. Citation advantage of open access articles.

    Directory of Open Access Journals (Sweden)

    Gunther Eysenbach

    2006-05-01

    Full Text Available Open access (OA to the research literature has the potential to accelerate recognition and dissemination of research findings, but its actual effects are controversial. This was a longitudinal bibliometric analysis of a cohort of OA and non-OA articles published between June 8, 2004, and December 20, 2004, in the same journal (PNAS: Proceedings of the National Academy of Sciences. Article characteristics were extracted, and citation data were compared between the two groups at three different points in time: at "quasi-baseline" (December 2004, 0-6 mo after publication, in April 2005 (4-10 mo after publication, and in October 2005 (10-16 mo after publication. Potentially confounding variables, including number of authors, authors' lifetime publication count and impact, submission track, country of corresponding author, funding organization, and discipline, were adjusted for in logistic and linear multiple regression models. A total of 1,492 original research articles were analyzed: 212 (14.2% of all articles were OA articles paid by the author, and 1,280 (85.8% were non-OA articles. In April 2005 (mean 206 d after publication, 627 (49.0% of the non-OA articles versus 78 (36.8% of the OA articles were not cited (relative risk = 1.3 [95% Confidence Interval: 1.1-1.6]; p = 0.001. 6 mo later (mean 288 d after publication, non-OA articles were still more likely to be uncited (non-OA: 172 [13.6%], OA: 11 [5.2%]; relative risk = 2.6 [1.4-4.7]; p < 0.001. The average number of citations of OA articles was higher compared to non-OA articles (April 2005: 1.5 [SD = 2.5] versus 1.2 [SD = 2.0]; Z = 3.123; p = 0.002; October 2005: 6.4 [SD = 10.4] versus 4.5 [SD = 4.9]; Z = 4.058; p < 0.001. In a logistic regression model, controlling for potential confounders, OA articles compared to non-OA articles remained twice as likely to be cited (odds ratio = 2.1 [1.5-2.9] in the first 4-10 mo after publication (April 2005, with the odds ratio increasing to 2.9 (1

  10. Indicators of the interdisciplinarity of journals: diversity, centrality, and citations

    NARCIS (Netherlands)

    Leydesdorff, L.; Rafols, I.

    2011-01-01

    A citation-based indicator for interdisciplinarity has been missing hitherto among the set of available journal indicators. In this study, we investigate network indicators (betweenness centrality), unevenness indicators (Shannon entropy, the Gini coefficient), and more recently proposed

  11. Analysis of Journal Citations in Thesis/Dissertations of Post ...

    African Journals Online (AJOL)

    Analysis of Journal Citations in Thesis/Dissertations of Post Graduates of the Department of Political Science, University of Calabar, Nigeria and Their Availability in the University Library: A Re-Visitation.

  12. Patent Citations and Financial Analysts’ Long-Term Growth Forecasts

    National Research Council Canada - National Science Library

    Jincheol Bae; Wonchang Hur; Jaehong Lee; Jaimin Goh

    2017-01-01

    ...’ innovation outputs, on financial analysts’ long-term growth forecasts for firms. We find that financial analysts are more likely to issue long-term forecasts for firms with higher patent citations...

  13. GPM GROUND VALIDATION UND CITATION CLOUD MICROPHYSICS GCPEX V1

    Data.gov (United States)

    National Aeronautics and Space Administration — The University of North Dakota (UND) Cessna Citation aircraft, an in-situ platform for the GCPEX campaign, carried a suite of instruments for measurements of cloud...

  14. GPM GROUND VALIDATION UND CITATION NAVIGATION DATA GCPEX V1

    Data.gov (United States)

    National Aeronautics and Space Administration — The Cessna Citation II Research aircraft owned and operated by the University of North Dakota (UND) participated in the GPM Cold-season Precipitation Experiment...

  15. challenges with reference citations among postgraduate students at ...

    African Journals Online (AJOL)

    User

    2012-12-30

    Dec 30, 2012 ... The researchers' experience while working on the Kwame Nkrumah University of ... 2012 Kwame Nkrumah University of Science and Technology (KNUST) ... Keywords: Documentation Styles, Citation, Bibliographic, KNUST.

  16. Parsing citations in biomedical articles using conditional random fields.

    Science.gov (United States)

    Zhang, Qing; Cao, Yong-Gang; Yu, Hong

    2011-04-01

    Citations are used ubiquitously in biomedical full-text articles and play an important role for representing both the rhetorical structure and the semantic content of the articles. As a result, text mining systems will significantly benefit from a tool that automatically extracts the content of a citation. In this study, we applied the supervised machine-learning algorithms Conditional Random Fields (CRFs) to automatically parse a citation into its fields (e.g., Author, Title, Journal, and Year). With a subset of html format open-access PubMed Central articles, we report an overall 97.95% F1-score. The citation parser can be accessed at: http://www.cs.uwm.edu/∼qing/projects/cithit/index.html. Copyright © 2011 Elsevier Ltd. All rights reserved.

  17. Edited Volumes, Monographs, and Book Chapters in the Book Citation Index (BCI) and Science Citation Index (SCI, SoSCI, A&HCI)

    CERN Document Server

    Leydesdorff, Loet

    2012-01-01

    In 2011, Thomson-Reuters introduced the Book Citation Index (BCI) as part of the Science Citation Index (SCI). The interface of the Web of Science version 5 enables users to search for both "Books" and "Book Chapters" as new categories. Books and book chapters, however, were always among the cited references, and book chapters have been included in the database since 2005. We explore the two categories with both BCI and SCI, and in the sister databases for the social sciences (SoSCI) and the arts and humanities (A&HCI). Book chapters in edited volumes can be highly cited. Books contain many citing references, but are relatively less cited. We suggest that this may find its origin in the slower circulation of books then of journal articles. It is possible to distinguish scientometrically between monographs and edited volumes among the "Books". Monographs may be underrated in terms of citation impact or overrated using publication performance indicators because individual chapters are counted separately as ...

  18. Vertical transmission of highly similar blaCTX-M-1-harboring IncI1 plasmids in Escherichia coli with different MLST types in the poultry production pyramid

    Science.gov (United States)

    Zurfluh, Katrin; Wang, Juan; Klumpp, Jochen; Nüesch-Inderbinen, Magdalena; Fanning, Séamus; Stephan, Roger

    2014-01-01

    Objectives: The purpose of this study was to characterize sets of extended-spectrum β-lactamases (ESBL)-producing Enterobacteriaceae collected longitudinally from different flocks of broiler breeders, meconium of 1-day-old broilers from theses breeder flocks, as well as from these broiler flocks before slaughter. Methods: Five sets of ESBL-producing Escherichia coli were studied by multi-locus sequence typing (MLST), phylogenetic grouping, PCR-based replicon typing and resistance profiling. The blaCTX-M-1-harboring plasmids of one set (pHV295.1, pHV114.1, and pHV292.1) were fully sequenced and subjected to comparative analysis. Results: Eleven different MLST sequence types (ST) were identified with ST1056 the predominant one, isolated in all five sets either on the broiler breeder or meconium level. Plasmid sequencing revealed that blaCTX-M-1 was carried by highly similar IncI1/ST3 plasmids that were 105 076 bp, 110 997 bp, and 117 269 bp in size, respectively. Conclusions: The fact that genetically similar IncI1/ST3 plasmids were found in ESBL-producing E. coli of different MLST types isolated at the different levels in the broiler production pyramid provides strong evidence for a vertical transmission of these plasmids from a common source (nucleus poultry flocks). PMID:25324838

  19. Vertical transmission of highly similar blaCTX-M-1-harbouring IncI1 plasmids in Escherichia coli with different MLST types in the poultry production pyramid

    Directory of Open Access Journals (Sweden)

    Katrin eZurfluh

    2014-09-01

    Full Text Available Objectives: The purpose of this study was to characterize sets of ESBL-producing Enterobacteriaceae collected longitudinally from different flocks of broiler breeders, meconium of one-day-old broilers from theses breeder flocks, as well as from these broiler flocks before slaughter.Methods: Five sets of ESBL-producing E. coli were studied by multi-locus sequence typing (MLST, phylogenetic grouping, PCR-based replicon typing (PBRT and resistance profiling. The blaCTX-M-1-harbouring plasmids of one set (pHV295.1, pHV114.1 and pHV292.1 were fully sequenced and subjected to comparative analysis.Results: Eleven different MLST sequence types (ST were identified with ST1056 the predominant one, isolated in all five sets either on the broiler breeder or meconium level. Plasmid sequencing revealed that blaCTX-M-1 was carried by highly similar IncI1/ST3 plasmids that were 105 076 bp, 110 997 bp and 117 269 bp in size, respectively. Conclusions: The fact that genetically similar IncI1/ST3 plasmids were found in ESBL-producing E. coli of different MLST types isolated at the different levels in the broiler production pyramid provides strong evidence for a vertical transmission of these plasmids from a common source (nucleus poultry flocks.

  20. Best Evidence in Emergency Medicine (BEEM) rater scores correlate with publications' future citations.

    Science.gov (United States)

    Carpenter, Christopher R; Sarli, Cathy C; Fowler, Susan A; Kulasegaram, Kulamakan; Vallera, Teresa; Lapaine, Pierre; Schalet, Grant; Worster, Andrew

    2013-10-01

    %) and diagnostic (27%), with various designs, including 37% systematic reviews, 32% randomized controlled trials (RCTs), and 30% observational designs. The citation rate and BEEM rater score correlated positively (0.144), while the BEEM rater score and the Journal Citation Report (JCR) impact factor score were minimally correlated (0.053). In the first model, the BEEM rater score significantly predicted WoS citation rate (p models adjusting for the JCR impact factor score, the h-indices of the first and last authors, number of authors, and study design, the BEEM rater score was not significant (p = 0.08). To the best of our knowledge, the BEEM rater score is the only known measure of clinical relevance. It has a high interrater reliability and face validity and correlates with future citations. Future research should assess this instrument against alternative constructs of clinical relevance. © 2013 by the Society for Academic Emergency Medicine.

  1. More Similar Than Different

    DEFF Research Database (Denmark)

    Pedersen, Mogens Jin

    2015-01-01

    What role do employee features play into the success of different personnel management practices for serving high performance? Using data from a randomized survey experiment among 5,982 individuals of all ages, this article examines how gender conditions the compliance effects of different...... incentive treatments—each relating to the basic content of distinct types of personnel management practices. The findings show that males and females are more similar than different in terms of the incentive treatments’ effects: Significant average effects are found for three out of five incentive...

  2. Anechoic Chambers: Aerospace Applications. (Latest Citations from the Aerospace Database)

    Science.gov (United States)

    1996-01-01

    The bibliography contains citations concerning the design, development, performance, and applications of anechoic chambers in the aerospace industry. Anechoic chamber testing equipment, techniques for evaluation of aerodynamic noise, microwave and radio antennas, and other acoustic measurement devices are considered. Shock wave studies on aircraft models and components, electromagnetic measurements, jet flow studies, and antenna radiation pattern measurements for industrial and military aerospace equipment are discussed. (Contains 50-250 citations and includes a subject term index and title list.)

  3. The role of the ADS in software discovery and citation

    Science.gov (United States)

    Accomazzi, Alberto

    2018-01-01

    As the primary index of scholarly content in astronomy and physics, the NASA Astrophysics Data System (ADS) is collaborating with the AAS journals and the Zenodo repository in an effort to promote the preservation of scientific software used in astronomy research and its citation in scholarly publications. In this talk I will discuss how ADS is updating its service infrastructure to allow for the publication, indexing, and citation of software records in scientific articles.

  4. Citation Analysis of PJCR Humanities Journals during 2003-2007

    OpenAIRE

    Roya Maghsoudi Daryeh

    2011-01-01

    By using citation analysis, this article has studied humanities journals of Persian Journal Citation Report (PJCR) during 2003-2007. In this research "Impact Factor" and "Immediacy Index" of these journals were investigated and top publishers were determined according to the Impact Factor indicator. Findings showed that more than 75% of these journals have Impact Factor during mentioned years, while only 30% journals have Immediacy Index. Comparing the average Impact Factor of humanities jour...

  5. Antimatter. (Latest citations from the INSPEC database). Published Search

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1996-01-01

    The bibliography contains citations concerning physical theory, testing, and practical applications of antimatter. Related nuclear phenomena, matter-antimatter interactions, relativity, antigravity, formation of the universe, and space-time configurations are described. The roles of cosmic rays, black holes, antiprotons, and positrons are discussed. Antimatter propulsion spacecraft are briefly cited. (Contains 50-250 citations and includes a subject term index and title list.) (Copyright NERAC, Inc. 1995)

  6. Antimatter. (Latest citations from the INSPEC database). Published Search

    Energy Technology Data Exchange (ETDEWEB)

    1994-12-01

    The bibliography contains citations concerning physical theory, testing, and practical applications of antimatter. Related nuclear phenomena, matter-antimatter interactions, relativity, antigravity, formation of the universe, and space-time configurations are described. The roles of cosmic rays, black holes, antiprotons, and positrons are discussed. Antimatter propulsion spacecraft are briefly cited. (Contains a minimum of 182 citations and includes a subject term index and title list.)

  7. Quantitative analysis of highly similar salvianolic acids with 1H qNMR for quality control of traditional Chinese medicinal preparation Salvianolate Lyophilized Injection.

    Science.gov (United States)

    Chen, Xialin; Guo, Yujie; Hu, Yuanjia; Yu, Boyang; Qi, Jin

    2016-05-30

    Salvianolate Lyophilized Injection (SLI), a traditional Chinese medicinal (TCM) preparation which is used to treat stroke, is composed of multiple salvianolic acids from the aqueous extracts of Salvia miltiorrhiza, and includes mainly protocatechualdehyde, rosmarinic acid, salvianolic acid B, salvianolic acid D, salvianolic acid E, diastereomer of salvianolic acid E, salvianolic acid Y, lithospermic acid and diastereomer of lithospermic acid. It is difficult to quantitatively control the quality of SLI using traditional high performance liquid chromatography due to the highly similar structure of these constituents including three pairs of diastereomers and the lack of commercial resources for most of these constituents as standards. Thus, a highly reproducible, fast, accurate and simple (1)H quantitative nuclear magnetic resonance (qNMR) method without the need for calibration curves and complex computation was established by optimizing the solvent system and acquisition parameters to simultaneously determine the nine salvianolic acids and mannitol in SLI. This method was validated and successfully used to determine 10 batches of SLI and the qNMR data were further analyzed with a vector including angle cosine and the partial least squares method for the quality control of SLI. The results indicated that qNMR can be used as a routine method for the quality control of SLI and may have potential in the quantification of diastereomers in other TCM preparations. Copyright © 2016. Published by Elsevier B.V.

  8. Similarities and differences of recent hybrid pixel detectors for X-ray and high energy physics developed at the Paul Scherrer Institut

    Science.gov (United States)

    Tinti, G.; Bergamaschi, A.; Cartier, S.; Dinapoli, R.; Greiffenberg, D.; Horisberger, R.; Johnson, I.; Jungmann-Smith, J. H.; Mezza, D.; Mozzanica, A.; Schmitt, B.; Shi, X.

    2015-04-01

    Hybrid pixel detectors are being developed for both photon science and high energy physics. The article will cover similarities and differences in pixel detectors for both applications using two of the pixel detectors developed at the Paul Scherrer Institute (Switzerland) as examples: the EIGER photon counting detector and the psi46dig chip, which has been developed for the Compact Muon Solenoid (CMS) tracking pixel detector upgrade. EIGER is a single photon counting hybrid pixel detector for applications at synchrotron light sources in the energy range from a few to 25 keV. It is characterized by a small pixel size (75 × 75 μm2), high count rate capability (106 counts/pixel/s) and very high data rate, which reaches 6 Gb/s for a 256 × 256 pixel chip. The CMS pixel detector is designed to provide charge information from the pixels in the harsh radiation environment at the Large Hadron Collider. The short time between bunches of 25 ns and the high event rate at luminosity up to 2 × 1034cm-2s-1 require a detector with high hit efficiency, with good timing resolution and the ability to retain timestamp information for the hits. The readout architecture is based on the transfer of hits from the pixels to the periphery, where the trigger validation is performed before data transfer. The data rates of the digitized output reach 160 Mb/s for a 52×80 pixel chip.The specific timing and rate requirements for the detectors, the analog performances (minimum threshold and noise), the power consumption and the radiation hardness will be compared. An overview on future developments based on mutual learning and common solutions will be discussed.

  9. The citation wake of publications detects nobel laureates' papers.

    Science.gov (United States)

    Klosik, David F; Bornholdt, Stefan

    2014-01-01

    For several decades, a leading paradigm of how to quantitatively assess scientific research has been the analysis of the aggregated citation information in a set of scientific publications. Although the representation of this information as a citation network has already been coined in the 1960s, it needed the systematic indexing of scientific literature to allow for impact metrics that actually made use of this network as a whole, improving on the then prevailing metrics that were almost exclusively based on the number of direct citations. However, besides focusing on the assignment of credit, the paper citation network can also be studied in terms of the proliferation of scientific ideas. Here we introduce a simple measure based on the shortest-paths in the paper's in-component or, simply speaking, on the shape and size of the wake of a paper within the citation network. Applied to a citation network containing Physical Review publications from more than a century, our approach is able to detect seminal articles which have introduced concepts of obvious importance to the further development of physics. We observe a large fraction of papers co-authored by Nobel Prize laureates in physics among the top-ranked publications.

  10. S-index: Measuring significant, not average, citation performance

    Science.gov (United States)

    Antonoyiannakis, Manolis

    2009-03-01

    We recently [1] introduced the ``citation density curve'' (or cumulative impact factor curve) that captures the full citation performance of a journal: its size, impact factor, the maximum number of citations per paper, the relative size of the different-cited portions of the journal, etc. The citation density curve displays a universal behavior across journals. We exploit this universality to extract a simple metric (the ``S-index'') to characterize the citation impact of ``significant'' papers in each journal. In doing so, we go beyond the journal impact factor, which only measures the impact of the average paper. The conventional wisdom of ranking journals according to their impact factors is thus challenged. Having shown the utility and robustness of the S-index in comparing and ranking journals of different sizes but within the same field, we explore the concept further, going beyond a single field, and beyond journals. Can we compare different scientific fields, departments, or universities? And how should one generalize the citation density curve and the S-index to address these questions? [1] M. Antonoyiannakis and S. Mitra, ``Is PRL too large to have an `impact'?'', Editorial, Physical Review Letters, December 2008.

  11. An exploration of crowdsourcing citation screening for systematic reviews

    Science.gov (United States)

    Mortensen, Michael L.; Adam, Gaelen P.; Trikalinos, Thomas A.; Kraska, Tim

    2017-01-01

    Systematic reviews are increasingly used to inform health care decisions, but are expensive to produce. We explore the use of crowdsourcing (distributing tasks to untrained workers via the web) to reduce the cost of screening citations. We used Amazon Mechanical Turk as our platform and 4 previously conducted systematic reviews as examples. For each citation, workers answered 4 or 5 questions that were equivalent to the eligibility criteria. We aggregated responses from multiple workers into an overall decision to include or exclude the citation using 1 of 9 algorithms and compared the performance of these algorithms to the corresponding decisions of trained experts. The most inclusive algorithm (designating a citation as relevant if any worker did) identified 95% to 99% of the citations that were ultimately included in the reviews while excluding 68% to 82% of irrelevant citations. Other algorithms increased the fraction of irrelevant articles excluded at some cost to the inclusion of relevant studies. Crowdworkers completed screening in 4 to 17 days, costing $460 to $2220, a cost reduction of up to 88% compared to trained experts. Crowdsourcing may represent a useful approach to reducing the cost of identifying literature for systematic reviews. PMID:28677322

  12. Semantic Web for Reliable Citation Analysis in Scholarly Publishing

    Directory of Open Access Journals (Sweden)

    Ruben Tous

    2011-03-01

    Full Text Available Analysis of the impact of scholarly artifacts is constrained by current unreliable practices in cross-referencing, citation discovering, and citation indexing and analysis, which have not kept pace with the technological advances that are occurring in several areas like knowledge management and security. Because citation analysis has become the primary component in scholarly impact factor calculation, and considering the relevance of this metric within both the scholarly publishing value chain and (especially important the professional curriculum evaluation of scholarly professionals, we defend that current practices need to be revised. This paper describes a reference architecture that aims to provide openness and reliability to the citation-tracking lifecycle. The solution relies on the use of digitally signed semantic metadata in the different stages of the scholarly publishing workflow in such a manner that authors, publishers, repositories, and citation-analysis systems will have access to independent reliable evidences that are resistant to forgery, impersonation, and repudiation. As far as we know, this is the first paper to combine Semantic Web technologies and public-key cryptography to achieve reliable citation analysis in scholarly publishing

  13. Patterns of citation when Korean scientists cite other Korean scientists

    Directory of Open Access Journals (Sweden)

    Yeonok Chung

    2016-08-01

    Full Text Available Citation patterns of Korean scientists are investigated by analyzing the references of the papers authored by Korean chemists and published in two journals of different standing. Particular interest is given to how frequently Korean researchers quote the papers written by other Korean researchers and whether there is any difference in the citation pattern when Korean researchers publish their papers in a top international journal or in a domestic journal. Two journals in the category of multidisciplinary chemistry, the Journal of the American Chemical Society and the Bulletin of the Korean Chemical Society, are chosen and a detailed analysis of the references of the papers written by Korean authors in 2015 was performed. The author self-citation rate is found to be much larger than the citation rate of other Korean authors. It is also found that the percentage of self-citations and the percentage of the references by Korean authors excluding self-citations are both significantly larger in the Bulletin of the Korean Chemical Society than in the Journal of the American Chemical Society. Interpretations of the results based on social exchange theory are proposed.

  14. Publication Speed, Reporting Metrics, and Citation Impact of Cardiovascular Trials Supported by the National Heart, Lung, and Blood Institute.

    Science.gov (United States)

    Gordon, David; Cooper-Arnold, Katharine; Lauer, Michael

    2015-07-31

    We previously demonstrated that cardiovascular (CV) trials funded by the National Heart, Lung, and Blood Institute (NHLBI) were more likely to be published in a timely manner and receive high raw citation counts if they focused on clinical endpoints. We did not examine the metrics of trial reports, and our citation measures were limited by failure to account for topic-related citation behaviors. Of 244 CV trials completed between 2000 and 2011, we identified 184 whose main results were published by August 20, 2014. One investigator who was blinded to rapidity of publication and citation data read each publication and characterized it according to modified Delphi criteria. There were 46 trials (25%) that had Delphi scores of 8 or 9 (of a possible 9); these trials published faster (median time from trial completion to publication, 12.6 [interquartile range {IQR}, 6.7 to 23.3] vs. 21.8 [IQR, 12.1 to 34.9] months; Pcitation impact (median citation percentile for topic and date of publication, with 0 best and 100 worst, 1.92 [IQR, 0.64 to 7.83] vs. 8.41 [IQR, 1.80 to 24.75]; P=0.002). By random forest regression, we found that the 3 most important predictors of normalized citation percentile values were total costs, intention-to-treat analyses (as a modified Delphi quality measure), and focus on clinical (not surrogate) endpoints. NHLBI CV trials were more likely to publish results quickly and yield higher topic-normalized citation impact if they reported results according to well-defined metrics, along with focus on clinical endpoints. © 2015 The Authors. Published on behalf of the American Heart Association, Inc., by Wiley Blackwell.

  15. Mineralogical Distribution of Germanium, Gallium and Indium at the Mt Carlton High-Sulfidation Epithermal Deposit, NE Australia, and Comparison with Similar Deposits Worldwide

    Directory of Open Access Journals (Sweden)

    Fredrik Sahlström

    2017-11-01

    Full Text Available Germanium, gallium and indium are in high demand due to their growing usage in high-tech and green-tech applications. However, the mineralogy and the mechanisms of concentration of these critical elements in different types of hydrothermal ore deposits remain poorly constrained. We investigated the mineralogical distribution of Ge, Ga and In at the Mt Carlton high-sulfidation epithermal deposit in NE Australia, using electron probe microanalysis and laser ablation inductively-coupled plasma mass spectrometry. Parageneses from which selected minerals were analyzed include: Stage 1 acid sulfate alteration (alunite, Stage 2A high-sulfidation enargite mineralization (enargite, argyrodite, sphalerite, pyrite, barite, Stage 2B intermediate-sulfidation sphalerite mineralization (sphalerite, pyrite, galena and Stage 3 hydrothermal void fill (dickite. Moderate to locally high concentrations of Ga were measured in Stage 1 alunite (up to 339 ppm and in Stage 3 dickite (up to 150 ppm. The Stage 2A ores show enrichment in Ge, which is primarily associated with argyrodite (up to 6.95 wt % Ge and Ge-bearing enargite (up to 2189 ppm Ge. Co-existing sphalerite has comparatively low Ge content (up to 143 ppm, while Ga (up to 1181 ppm and In (up to 571 ppm are higher. Sphalerite in Stage 2B contains up to 611 ppm Ge, 2829 ppm Ga and 2169 ppm In, and locally exhibits fine colloform bands of an uncharacterized Zn-In mineral with compositions close to CuZn2(In,GaS4. Barite, pyrite and galena which occur in association with Stage 2 mineralization were found to play negligible roles as carriers of Ge, Ga and In at Mt Carlton. Analyzed reference samples of enargite from seven similar deposits worldwide have average Ge concentrations ranging from 12 to 717 ppm (maximum 2679 ppm. The deposits from which samples showed high enrichment in critical elements in this study are all hosted in stratigraphic sequences that locally contain carbonaceous sedimentary rocks. In

  16. MScanner: a classifier for retrieving Medline citations.

    Science.gov (United States)

    Poulter, Graham L; Rubin, Daniel L; Altman, Russ B; Seoighe, Cathal

    2008-02-19

    many features may indicate relevance. Its web interface simplifies the task of classifying Medline citations, compared to building a pre-filter and classifier specific to the topic. The data sets and open source code used to obtain the results in this paper are available on-line and as supplementary material, and the web interface may be accessed at http://mscanner.stanford.edu.

  17. Three-feature model to reproduce the topology of citation networks and the effects from authors' visibility on their h-index

    CERN Document Server

    Amancio, Diego R; Costa, Luciano da F; 10.1016/j.joi.2012.02.005

    2013-01-01

    Various factors are believed to govern the selection of references in citation networks, but a precise, quantitative determination of their importance has remained elusive. In this paper, we show that three factors can account for the referencing pattern of citation networks for two topics, namely "graphenes" and "complex networks", thus allowing one to reproduce the topological features of the networks built with papers being the nodes and the edges established by citations. The most relevant factor was content similarity, while the other two - in-degree (i.e. citation counts) and {age of publication} had varying importance depending on the topic studied. This dependence indicates that additional factors could play a role. Indeed, by intuition one should expect the reputation (or visibility) of authors and/or institutions to affect the referencing pattern, and this is only indirectly considered via the in-degree that should correlate with such reputation. Because information on reputation is not readily avai...

  18. Relative Citation Ratio (RCR): A New Metric That Uses Citation Rates to Measure Influence at the Article Level.

    Science.gov (United States)

    Hutchins, B Ian; Yuan, Xin; Anderson, James M; Santangelo, George M

    2016-09-01

    Despite their recognized limitations, bibliometric assessments of scientific productivity have been widely adopted. We describe here an improved method to quantify the influence of a research article by making novel use of its co-citation network to field-normalize the number of citations it has received. Article citation rates are divided by an expected citation rate that is derived from performance of articles in the same field and benchmarked to a peer comparison group. The resulting Relative Citation Ratio is article level and field independent and provides an alternative to the invalid practice of using journal impact factors to identify influential papers. To illustrate one application of our method, we analyzed 88,835 articles published between 2003 and 2010 and found that the National Institutes of Health awardees who authored those papers occupy relatively stable positions of influence across all disciplines. We demonstrate that the values generated by this method strongly correlate with the opinions of subject matter experts in biomedical research and suggest that the same approach should be generally applicable to articles published in all areas of science. A beta version of iCite, our web tool for calculating Relative Citation Ratios of articles listed in PubMed, is available at https://icite.od.nih.gov.

  19. Relative Citation Ratio (RCR): A New Metric That Uses Citation Rates to Measure Influence at the Article Level

    Science.gov (United States)

    Hutchins, B. Ian; Yuan, Xin; Santangelo, George M.

    2016-01-01

    Despite their recognized limitations, bibliometric assessments of scientific productivity have been widely adopted. We describe here an improved method to quantify the influence of a research article by making novel use of its co-citation network to field-normalize the number of citations it has received. Article citation rates are divided by an expected citation rate that is derived from performance of articles in the same field and benchmarked to a peer comparison group. The resulting Relative Citation Ratio is article level and field independent and provides an alternative to the invalid practice of using journal impact factors to identify influential papers. To illustrate one application of our method, we analyzed 88,835 articles published between 2003 and 2010 and found that the National Institutes of Health awardees who authored those papers occupy relatively stable positions of influence across all disciplines. We demonstrate that the values generated by this method strongly correlate with the opinions of subject matter experts in biomedical research and suggest that the same approach should be generally applicable to articles published in all areas of science. A beta version of iCite, our web tool for calculating Relative Citation Ratios of articles listed in PubMed, is available at https://icite.od.nih.gov. PMID:27599104

  20. Relative Citation Ratio (RCR: A New Metric That Uses Citation Rates to Measure Influence at the Article Level.

    Directory of Open Access Journals (Sweden)

    B Ian Hutchins

    2016-09-01

    Full Text Available Despite their recognized limitations, bibliometric assessments of scientific productivity have been widely adopted. We describe here an improved method to quantify the influence of a research article by making novel use of its co-citation network to field-normalize the number of citations it has received. Article citation rates are divided by an expected citation rate that is derived from performance of articles in the same field and benchmarked to a peer comparison group. The resulting Relative Citation Ratio is article level and field independent and provides an alternative to the invalid practice of using journal impact factors to identify influential papers. To illustrate one application of our method, we analyzed 88,835 articles published between 2003 and 2010 and found that the National Institutes of Health awardees who authored those papers occupy relatively stable positions of influence across all disciplines. We demonstrate that the values generated by this method strongly correlate with the opinions of subject matter experts in biomedical research and suggest that the same approach should be generally applicable to articles published in all areas of science. A beta version of iCite, our web tool for calculating Relative Citation Ratios of articles listed in PubMed, is available at https://icite.od.nih.gov.

  1. Specific character of citations in historiography (using the example of Polish history).

    Science.gov (United States)

    Kolasa, Władysław Marek

    2012-03-01

    The first part of the paper deals with the assessment of international databases in relation to the number of historical publications (representation and relevance in comparison with the model database). The second part is focused on providing answer to the question whether historiography is governed by similar bibliometric rules as exact sciences or whether it has its own specific character. Empirical database for this part of the research constituted the database prepared ad hoc: The Citation Index of the History of Polish Media (CIHPM). Among numerous typically historical features the main focus was put on: linguistic localism, specific character of publishing forms, differences in citing of various sources (contributions and syntheses) and specific character of the authorship (the Lorenz Curve and the Lotka's Law). Slightly more attention was devoted to the half-life indicator and its role in a diachronic study of a scientific field; also, a new indicator (HL14), depicting distribution of citations younger then half-life was introduced. Additionally, the comparison and correlation of selected parameters for the body of historical science (citations, HL14, the Hirsch Index, number of publications, volume and other) were also conducted.

  2. Quantitative evaluation of gender bias in astronomical publications from citation counts

    Science.gov (United States)

    Caplar, Neven; Tacchella, Sandro; Birrer, Simon

    2017-06-01

    Numerous studies across different research fields have shown that both male and female referees consistently give higher scores to work done by men than to identical work done by women 1,2,3 . In addition, women are under-represented in prestigious publications and authorship positions 4,5 and women receive ~10% fewer citations 6,7 . In astronomy, similar biases have been measured in conference participation 8,9 and success rates for telescope proposals 10,11 . Even though the number of doctorate degrees awarded to women is constantly increasing, women still tend to be under-represented in faculty positions 12 . Spurred by these findings, we measure the role of gender in the number of citations that papers receive in astronomy. To account for the fact that the properties of papers written by men and women differ intrinsically, we use a random forest algorithm to control for the non-gender-specific properties of these papers. Here we show that papers authored by women receive 10.4 ± 0.9% fewer citations than would be expected if the papers with the same non-gender-specific properties were written by men.

  3. Internationality of Publications, Co-Authorship, References and Citations in Brazilian Evolutionary Biology

    Directory of Open Access Journals (Sweden)

    Dirce Maria Santin

    2016-02-01

    Full Text Available The international dimensions of contemporary science have significantly impacted production and use patterns of scientific knowledge, which, in turn, requires new insights of librarians, publishers and academic institutions. Despite the recognized importance of internationality in science, studies on the internationalization of scientific output are still limited and dedicated exclusively to analyzing of its diffusion and international collaboration. This study analyzes the national/international character of articles, international collaboration, references and citations of Brazilian scientific output in Evolutionary Biology in order to understand the contribution to the internationalization of science in Brazil. Analyses are based on data from the Science Citation Index of Web of Science and include 1450 articles, 60,454 references and 18,059 citing documents. Results reveal similar internationality patterns, with 99.6% of articles published in foreign journals, 90.5% international references, and 88.5% international citations. Despite recording the lowest value among the indicators (51.9%, international collaboration surpasses the national and international average and is an important characteristic in the field in Brazil, contributing to increasing the number of references and the impact of articles. Evolutionary Biology is considered a predominantly international field, whose internationality patterns increase the audience for the studies and provide greater visibility for Brazilian science.

  4. 29 CFR 2700.23 - Review of a subsequent citation or order.

    Science.gov (United States)

    2010-07-01

    ... 29 Labor 9 2010-07-01 2010-07-01 false Review of a subsequent citation or order. 2700.23 Section... COMMISSION PROCEDURAL RULES Contests of Citations and Orders § 2700.23 Review of a subsequent citation or order. (a) The contesting party shall file any subsequent citation or order that modifies or terminates...

  5. 29 CFR 2700.21 - Effect of filing notice of contest of citation or order.

    Science.gov (United States)

    2010-07-01

    ... 29 Labor 9 2010-07-01 2010-07-01 false Effect of filing notice of contest of citation or order... REVIEW COMMISSION PROCEDURAL RULES Contests of Citations and Orders § 2700.21 Effect of filing notice of contest of citation or order. (a) The filing of a notice of contest of a citation or order issued under...

  6. 15 CFR Appendix D to Part 30 - AES Filing Citation, Exemption and Exclusion Legends

    Science.gov (United States)

    2010-01-01

    ... 15 Commerce and Foreign Trade 1 2010-01-01 2010-01-01 false AES Filing Citation, Exemption and... Appendix D to Part 30—AES Filing Citation, Exemption and Exclusion Legends I. USML Proof of Filing Citation AES ITN Example: AES X20060101987654. II. AES Proof of Filing Citation subpart A § 30.7 AES ITN...

  7. Bibliometric Rankings of Journals Based on the Thomson Reuters Citations Database

    NARCIS (Netherlands)

    C-L. Chang (Chia-Lin); M.J. McAleer (Michael)

    2015-01-01

    markdownabstract__Abstract__ Virtually all rankings of journals are based on citations, including self citations by journals and individual academics. The gold standard for bibliometric rankings based on citations data is the widely-used Thomson Reuters Web of Science (2014) citations database,

  8. High-intensity interval and moderate-intensity continuous training elicit similar enjoyment and adherence levels in overweight and obese adults.

    Science.gov (United States)

    Vella, Chantal A; Taylor, Katrina; Drummer, Devin

    2017-10-01

    High-intensity interval training (HIIT) has been shown to improve cardiometabolic health during supervised lab-based studies but adherence, enjoyment, and health benefits of HIIT performed independently are yet to be understood. We compared adherence, enjoyment, and cardiometabolic outcomes after 8 weeks of HIIT or moderate-intensity continuous training (MICT), matched for energy expenditure, in overweight and obese young adults. 17 adults were randomized to HIIT or MICT. After completing 12 sessions of supervised training over 3 weeks, participants were asked to independently perform HIIT or MICT for 30 min, 4 times/week for 5 weeks. Cardiometabolic outcomes included cardiorespiratory fitness (VO 2 peak), lipids, and inflammatory markers. Exercise enjoyment was measured by the validated Physical Activity Enjoyment Scale. Exercise adherence (93.4 ± 3.1% vs. 93.1 ± 3.7%, respectively) and mean enjoyment across the intervention (100.1 ± 4.3 vs. 100.3 ± 4.4, respectively) were high, with no differences between HIIT and MICT (p > .05). Similarly, enjoyment levels did not change over time in either group (p > .05). After training, HIIT exhibited a greater decrease in low-density lipoprotein cholesterol than MICT (-0.66 mmol L -1 vs. -0.03 mmol L -1 , respectively) and a greater increase in VO 2 peak than MICT (p HIIT (+0.5 pg mL -1 and + 31.4 nmol L -1 , respectively) and decreased in MICT (-0.6 pg mL -1 and -6.7 nmol L -1 , respectively, p HIIT is enjoyable and has high unsupervised adherence rates in overweight and obese adults. However, HIIT may be associated with an increase in inflammation with short-term exercise in this population.

  9. Mandatory and Self-citation; Types, Reasons, Their Benefits and Disadvantages.

    Science.gov (United States)

    Hemmat Esfe, Mohammad; Wongwises, Somchai; Asadi, Amin; Karimipour, Arash; Akbari, Mohammad

    2015-12-01

    This paper defines and discusses two important types of citations, self-citation and mandatory citation, in engineering journals. Citation can be classified in three categories: optional; semi-mandatory; and mandatory. There are some negative and positive impacts for the authors' paper and journals' reputation if mandatory citation of a paper or set of papers is requested. These effects can be different based on the recommended papers for citing in the new research. Mandatory citation has various types discussed in this paper. Self-citation and its reasons and impacts are also discussed in the present study.

  10. Identifying Anomalous Citations for Objective Evaluation of Scholarly Article Impact.

    Directory of Open Access Journals (Sweden)

    Xiaomei Bai

    Full Text Available Evaluating the impact of a scholarly article is of great significance and has attracted great attentions. Although citation-based evaluation approaches have been widely used, these approaches face limitations e.g. in identifying anomalous citations patterns. This negligence would inevitably cause unfairness and inaccuracy to the article impact evaluation. In this study, in order to discover the anomalous citations and ensure the fairness and accuracy of research outcome evaluation, we investigate the citation relationships between articles using the following factors: collaboration times, the time span of collaboration, citing times and the time span of citing to weaken the relationship of Conflict of Interest (COI in the citation network. Meanwhile, we study a special kind of COI, namely suspected COI relationship. Based on the COI relationship, we further bring forward the COIRank algorithm, an innovative scheme for accurately assessing the impact of an article. Our method distinguishes the citation strength, and utilizes PageRank and HITS algorithms to rank scholarly articles comprehensively. The experiments are conducted on the American Physical Society (APS dataset. We find that about 80.88% articles contain contributed citations by co-authors in 26,366 articles and 75.55% articles among these articles are cited by the authors belonging to the same affiliation, indicating COI and suspected COI should not be ignored for evaluating impact of scientific papers objectively. Moreover, our experimental results demonstrate COIRank algorithm significantly outperforms the state-of-art solutions. The validity of our approach is verified by using the probability of Recommendation Intensity.

  11. [Citation patterns in Portuguese and Brazilian biomedical journals].

    Science.gov (United States)

    Lopes, Sílvia Costa; Santos, Tiago S; Lopes, Pedro Faria; Fernandez-Llimos, Fernando

    2012-01-01

    Bibliographic references of scientific articles are the source for calculating impact indexes frequently used for the assignment of funding to research projects. Different citation patterns may result in measurement bias of these impact indexes. To analyze citation patterns of Brazilian and Portuguese biomedical journals regarding the geographic origin of the sources cited. As part of the v+biomed project, a convenience sample of 11 biomedical journals, 4 Portuguese and 7 Brazilian, was gathered including the following subject categories: General and Internal Medicine, Public Health, Gynecology and Obstetrics, and Surgery. All the references from all the articles published in all the issues (except supplements) in 2009 and 2010 were retrieved. The type of source cited and its geographic origin were analyzed. A total of 102 issues from the 11 journals, containing 1430 articles, with a total of 32782 references were analyzed. No differences were found regarding the number of authors, pages or references between articles from Brazilian and Portuguese journals. Brazilian journals presented higher prevalence of English language and cited significantly more journals from their own country (30.1%) comparing to Portuguese journals (5.4%). Additionally, a lower citation rate to journals from the other country analyzed was evident in Brazilian (0.1%) when compared to Portuguese (3.2%) journals, as well as a higher self-citation of Brazilian journals (Brazil - 5.6%, Portugal - 2.1%). A different citation pattern between Portuguese and Brazilian biomedical journals was found, consisting of a higher citation rate from Brazilian to other Brazilian journals and to themselves. This differential in citation patterns may have implications on impact indexes determination which warrant further investigation.

  12. Identifying Anomalous Citations for Objective Evaluation of Scholarly Article Impact.

    Science.gov (United States)

    Bai, Xiaomei; Xia, Feng; Lee, Ivan; Zhang, Jun; Ning, Zhaolong

    2016-01-01

    Evaluating the impact of a scholarly article is of great significance and has attracted great attentions. Although citation-based evaluation approaches have been widely used, these approaches face limitations e.g. in identifying anomalous citations patterns. This negligence would inevitably cause unfairness and inaccuracy to the article impact evaluation. In this study, in order to discover the anomalous citations and ensure the fairness and accuracy of research outcome evaluation, we investigate the citation relationships between articles using the following factors: collaboration times, the time span of collaboration, citing times and the time span of citing to weaken the relationship of Conflict of Interest (COI) in the citation network. Meanwhile, we study a special kind of COI, namely suspected COI relationship. Based on the COI relationship, we further bring forward the COIRank algorithm, an innovative scheme for accurately assessing the impact of an article. Our method distinguishes the citation strength, and utilizes PageRank and HITS algorithms to rank scholarly articles comprehensively. The experiments are conducted on the American Physical Society (APS) dataset. We find that about 80.88% articles contain contributed citations by co-authors in 26,366 articles and 75.55% articles among these articles are cited by the authors belonging to the same affiliation, indicating COI and suspected COI should not be ignored for evaluating impact of scientific papers objectively. Moreover, our experimental results demonstrate COIRank algorithm significantly outperforms the state-of-art solutions. The validity of our approach is verified by using the probability of Recommendation Intensity.

  13. A review on citation amnesia in depression and inflammation research.

    Science.gov (United States)

    Maes, Michael

    2015-01-01

    Once original scientific results are published the author has the "intellectual property" and may claim ownership. Discovery credit is one of the most important "rewards" for scientists and thus incorrect credits undermine the reward system of science. Scientists who publish should therefore give proper credit and acknowledge the primary sources. Failure to do so is regarded as "citation negligence", "the disregard syndrome", "citation amnesia", "plagiarism by omission", "bibliographic plagiarism" or "citation plagiarism", and may range from an unconscious or conscious "failure to credit a prior discoverer so as to give an improper impression of priority" to "the appropriation of another person's ideas or results without given proper credit". False discovery credit is considered to be "a menace to honest science", "a serious transgression" or "intellectual theft, be it intentional or not". This paper describes some examples of citation amnesia showing that scientists often fail to credit prior sources and give false discovery credit to other scientists. One example is the association between major depression and activated immuno-inflammatory pathways, a discovery by European groups and published in many papers since 1990. Now, 25 years later, it is commonplace that these theories are credited to secondary American sources whose work in "the last decade", did or did not examine these pathways in major depression. This gives an improper impression of priority of American-based scientists. Here it is proposed that this citation amnesia and plagiarism reinforced the wrong science and had negative effects on the development of immune-inflammatory biomarkers and new immune-related treatments for depression. It is concluded that journal editors should improve their citation standards to guarantee correct assignment of discovery credit for example by demanding a signed pledge from the authors that correct citations to the primary sources were made.

  14. How citation boosts promote scientific paradigm shifts and nobel prizes.

    Directory of Open Access Journals (Sweden)

    Amin Mazloumian

    Full Text Available Nobel Prizes are commonly seen to be among the most prestigious achievements of our times. Based on mining several million citations, we quantitatively analyze the processes driving paradigm shifts in science. We find that groundbreaking discoveries of Nobel Prize Laureates and other famous scientists are not only acknowledged by many citations of their landmark papers. Surprisingly, they also boost the citation rates of their previous publications. Given that innovations must outcompete the rich-gets-richer effect for scientific citations, it turns out that they can make their way only through citation cascades. A quantitative analysis reveals how and why they happen. Science appears to behave like a self-organized critical system, in which citation cascades of all sizes occur, from continuous scientific progress all the way up to scientific revolutions, which change the way we see our world. Measuring the "boosting effect" of landmark papers, our analysis reveals how new ideas and new players can make their way and finally triumph in a world dominated by established paradigms. The underlying "boost factor" is also useful to discover scientific breakthroughs and talents much earlier than through classical citation analysis, which by now has become a widespread method to measure scientific excellence, influencing scientific careers and the distribution of research funds. Our findings reveal patterns of collective social behavior, which are also interesting from an attention economics perspective. Understanding the origin of scientific authority may therefore ultimately help to explain how social influence comes about and why the value of goods depends so strongly on the attention they attract.

  15. Google matrix of the citation network of Physical Review.

    Science.gov (United States)

    Frahm, Klaus M; Eom, Young-Ho; Shepelyansky, Dima L

    2014-05-01

    We study the statistical properties of spectrum and eigenstates of the Google matrix of the citation network of Physical Review for the period 1893-2009. The main fraction of complex eigenvalues with largest modulus is determined numerically by different methods based on high-precision computations with up to p = 16384 binary digits that allow us to resolve hard numerical problems for small eigenvalues. The nearly nilpotent matrix structure allows us to obtain a semianalytical computation of eigenvalues. We find that the spectrum is characterized by the fractal Weyl law with a fractal dimension d(f) ≈ 1. It is found that the majority of eigenvectors are located in a localized phase. The statistical distribution of articles in the PageRank-CheiRank plane is established providing a better understanding of information flows on the network. The concept of ImpactRank is proposed to determine an influence domain of a given article. We also discuss the properties of random matrix models of Perron-Frobenius operators.

  16. Implications for the Consideration of References Instead of Citations for the Bibliometric Laws and Science Evaluation

    OpenAIRE

    Silio Martinez, Teresa; Aguillo, Isidro F.

    2006-01-01

    INTRODUCTION: Citation indexes are produced by counting de-contextualised citations, which result from the transformation of references into citations, generating two different objects -two different signs-. This causes an ambiguity of both signs which is relevant for citation indexes and for science evaluation. METHODOLOGY: Two methods were used: 1) Qualitatively: It is performed a semiotic analysis in order to distinguish between bibliographic references and citations in terms of electronic...

  17. BRCA1-mutated and basal-like breast cancers have similar aCGH profiles and a high incidence of protein truncating TP53 mutations

    Directory of Open Access Journals (Sweden)

    van de Vijver Marc J

    2010-11-01

    Full Text Available Abstract Background Basal-like breast cancers (BLBC are aggressive breast cancers for which, so far, no targeted therapy is available because they typically lack expression of hormone receptors and HER2. Phenotypic features of BLBCs, such as clinical presentation and early age of onset, resemble those of breast tumors from BRCA1-mutation carriers. The genomic instability of BRCA1-mutated tumors can be effectively targeted with DNA-damaging agents and poly-(ADP-ribose polymerase 1 (PARP1 inhibitors. Molecular similarities between BLBCs and BRCA1-mutated tumors may therefore provide predictive markers for therapeutic response of BLBCs. Methods There are several known molecular features characteristic for BRCA1-mutated breast tumors: 1 increased numbers of genomic aberrations, 2 a distinct pattern of genomic aberrations, 3 a high frequency of TP53 mutations and 4 a high incidence of complex, protein-truncating TP53 mutations. We compared the frequency of TP53 mutations and the pattern and amount of genomic aberrations between BRCA1-mutated breast tumors, BLBCs and luminal breast tumors by TP53 gene sequencing and array-based comparative genomics hybridization (aCGH analysis. Results We found that the high incidence of protein truncating TP53 mutations and the pattern and amount of genomic aberrations specific for BRCA1-mutated breast tumors are also characteristic for BLBCs and different from luminal breast tumors. Conclusions Complex, protein truncating TP53 mutations in BRCA1-mutated tumors may be a direct consequence of genomic instability caused by BRCA1 loss, therefore, the presence of these types of TP53 mutations in sporadic BLBCs might be a hallmark of BRCAness and a potential biomarker for sensitivity to PARP inhibition. Also, our data suggest that a small subset of genomic regions may be used to identify BRCA1-like BLBCs. BLBCs share molecular features that were previously found to be specific for BRCA1-mutated breast tumors. These

  18. BRCA1-mutated and basal-like breast cancers have similar aCGH profiles and a high incidence of protein truncating TP53 mutations.

    Science.gov (United States)

    Holstege, Henne; Horlings, Hugo M; Velds, Arno; Langerød, Anita; Børresen-Dale, Anne-Lise; van de Vijver, Marc J; Nederlof, Petra M; Jonkers, Jos

    2010-11-30

    Basal-like breast cancers (BLBC) are aggressive breast cancers for which, so far, no targeted therapy is available because they typically lack expression of hormone receptors and HER2. Phenotypic features of BLBCs, such as clinical presentation and early age of onset, resemble those of breast tumors from BRCA1-mutation carriers. The genomic instability of BRCA1-mutated tumors can be effectively targeted with DNA-damaging agents and poly-(ADP-ribose) polymerase 1 (PARP1) inhibitors. Molecular similarities between BLBCs and BRCA1-mutated tumors may therefore provide predictive markers for therapeutic response of BLBCs. There are several known molecular features characteristic for BRCA1-mutated breast tumors: 1) increased numbers of genomic aberrations, 2) a distinct pattern of genomic aberrations, 3) a high frequency of TP53 mutations and 4) a high incidence of complex, protein-truncating TP53 mutations. We compared the frequency of TP53 mutations and the pattern and amount of genomic aberrations between BRCA1-mutated breast tumors, BLBCs and luminal breast tumors by TP53 gene sequencing and array-based comparative genomics hybridization (aCGH) analysis. We found that the high incidence of protein truncating TP53 mutations and the pattern and amount of genomic aberrations specific for BRCA1-mutated breast tumors are also characteristic for BLBCs and different from luminal breast tumors. Complex, protein truncating TP53 mutations in BRCA1-mutated tumors may be a direct consequence of genomic instability caused by BRCA1 loss, therefore, the presence of these types of TP53 mutations in sporadic BLBCs might be a hallmark of BRCAness and a potential biomarker for sensitivity to PARP inhibition. Also, our data suggest that a small subset of genomic regions may be used to identify BRCA1-like BLBCs. BLBCs share molecular features that were previously found to be specific for BRCA1-mutated breast tumors. These features might be useful for the identification of tumors with

  19. An Analysis of Looking Back Method in Problem-Based Learning: Case Study on Congruence and Similarity in Junior High School

    Science.gov (United States)

    Kosasih, U.; Wahyudin, W.; Prabawanto, S.

    2017-09-01

    This study aims to understand how learners do look back their idea of problem solving. This research is based on qualitative approach with case study design. Participants in this study were xx students of Junior High School, who were studying the material of congruence and similarity. The supporting instruments in this research are test and interview sheet. The data obtained were analyzed by coding and constant-comparison. The analysis find that there are three ways in which the students review the idea of problem solving, which is 1) carried out by comparing answers to the completion measures exemplified by learning resources; 2) carried out by examining the logical relationship between the solution and the problem; and 3) carried out by means of confirmation to the prior knowledge they have. This happens because most students learn in a mechanistic way. This study concludes that students validate the idea of problem solving obtained, influenced by teacher explanations, learning resources, and prior knowledge. Therefore, teacher explanations and learning resources contribute to the success or failure of students in solving problems.

  20. New Jersey's license plate decal requirement for graduated driver licenses: attitudes of parents and teenagers, observed decal use, and citations for teenage driving violations.

    Science.gov (United States)

    McCartt, Anne T; Oesch, Nathan J; Williams, Allan F; Powell, Tara Casanova

    2013-01-01

    On May 1, 2010, New Jersey implemented a law requiring teenagers with learner's permits or probationary licenses to display reflective decals on the front and rear license plates when they drive. The current study examined attitudes of parents and teenagers toward this requirement, use of decals, and reported violations and police enforcement of the graduated driver license law. Statewide telephone surveys of representative samples of parents and teenagers were conducted in February to April 2010 and March to June 2011. Use of decals among probationary license holders was observed at 4 high schools in fall 2010 and in spring 2011 and hand-out surveys were distributed. Data on citations issued for violations of the graduated driver license law were obtained. When interviewed in spring 2011, a large majority of parents of probationary license holders, parents of learner's permit holders, and teenagers with probationary licenses disapproved of decals for probationary licenses. About two thirds of both sets of parents and about half of teenagers disapproved of decals for learner's permits. Support for decals for both license types declined significantly from 2010 to 2011. For parents and teenagers alike, opposition was mainly attributed to concern about identifying and/or targeting teenage drivers by other drivers, predators, or police. In 2011, 77 percent of parents of probationary license holders said that their teenagers had decals for the vehicles driven most often; 46 percent said their teenagers always used decals. Fifty-six percent of parents of learner's permit holders said that their teenagers had decals for the vehicles driven most often; 37 percent said that their teenagers always used decals. Teenagers' reported violations of license restrictions either increased or were similar in 2011 compared to 2010. Observed rates of decal use by probationary license holders at high schools in spring 2011 ranged from 24 to 64 percent. The number of statewide citations

  1. Publication Trends and Citation Impact of Tribology Research in India: A Scientometric Study

    Directory of Open Access Journals (Sweden)

    Rajendran, P.

    2014-03-01

    Full Text Available This paper analyzes India's contribution to world tribology research during the period 2001-2012 based on SCOPUS records. India's global publication share, annual output, and its citation impact of Indian contribution, partner countries, leading contributors, leading institutes, and highly cited papers were analyzed. Additionally, a cloud technique is used to map frequently used single words in titles. It is observed that India ranks in the $7^{th}$ position with a global publication share of 3.83% and an annual average growth rate of 25.58% during the period 2001-2012. The citation impact of India's contribution is 6.05 which decreased from 12.74 during 2001-2006 to 4.62 during 2007-2012. 17.4% of India's total research output was published with international collaboration.

  2. Tweeting birds: online mentions predict future citations in ornithology.

    Science.gov (United States)

    Finch, Tom; O'Hanlon, Nina; Dudley, Steve P

    2017-11-01

    The rapid growth of online tools to communicate scientific research raises the important question of whether online attention is associated with citations in the scholarly literature. The Altmetric Attention Score (AAS) quantifies the attention received by a scientific publication on various online platforms including news, blogs and social media. It has been advanced as a rapid way of gauging the impact of a piece of research, both in terms of potential future scholarly citations and wider online engagement. Here, we explore variation in the AAS of 2677 research articles published in 10 ornithological journals between 2012 and 2016. On average, AAS increased sevenfold in just five years, primarily due to increased activity on Twitter which contributed 75% of the total score. For a subset of 878 articles published in 2014, including an additional 323 ornithology articles from non-specialist journals, an increase in AAS from 1 to 20 resulted in a predicted 112% increase in citation count from 2.6 to 5.5 citations per article. This effect interacted with journal impact factor, with weaker effects of AAS in higher impact factor journals. Our results suggest that altmetrics (or the online activity they measure), as well as complementing traditional measures of scholarly impact in ornithology such as citations, may also anticipate or even drive them.

  3. Citation metrics of excellence in sports biomechanics research.

    Science.gov (United States)

    Knudson, Duane

    2017-11-13

    This study extended research on key citation metrics of winners of two career scholar awards in sports biomechanics. Google Scholar (GS) was searched using Harzing's Publish or Perish software for the 13 most recent winners of the ISBS Geoffrey Dyson Award and the ASB Jim Hay Memorial Award. Returned records were corrected for author, and publications excluded for all but peer-reviewed journal articles, proceedings articles, chapters and books in English. These recent award winners had published about 150 publications that had been cited typically 4,082 and 6,648 times over a 26- and 28-year period before receiving these career awards for sports biomechanics research. Estimated median citations at time of their awards were 2,927 and 4,907 for the Dyson and Hay awards, respectively. Award winners had mean Hirsh indexes of 32-45 and mean h i of 19-28. Their mean g indexes (59-84) and their numerous citation classics (C > 100) indicated that they had many influential publications. The citation metrics of these scholars were outstanding and consistent with recent studies of top scholars in biomechanics and kinesiology/exercise science. Careful searching, cleaning and interpretation of several scholar-level citation metrics may provide useful confirmatory evidence for evaluations of awards committees.

  4. Ranking Scientific Publications Based on Their Citation Graph

    CERN Document Server

    Marian, L; Rajman, M

    2009-01-01

    CDS Invenio is the web-based integrated digital library system developed at CERN. It is a suite of applications which provides the framework and tools for building and managing an autonomous digital library server. Within this framework, the goal of this project is to implement new ranking methods based on the bibliographic citation graph extracted from the CDS Invenio database. As a first step, we implemented the Citation Count as a baseline ranking method. The major disadvantage of this method is that all citations are treated equally, disregarding their importance and their publication date. To overcome this drawback, we consider two different approaches: a link-based approach which extends the PageRank model to the bibliographic citation graph and a time-dependent approach which takes into account time in the citation counts. In addition, we also combined these two approaches in a hybrid model based on a time-dependent PageRank. In the present document, we describe the conceptual background behind our new...

  5. Citation Impact of Collaboration in Radiology Research.

    Science.gov (United States)

    Rosenkrantz, Andrew B; Parikh, Ujas; Duszak, Richard

    2017-11-01

    Team science involving multidisciplinary and multi-institutional collaboration is increasingly recognized as a means of strengthening the quality of scientific research. The aim of this study was to assess associations between various forms of collaboration and the citation impact of published radiology research. In 2010, 876 original research articles published in Academic Radiology, the American Journal of Roentgenology, JACR, and Radiology were identified with at least one radiology-affiliated author. All articles were manually reviewed to extract features related to all authors' disciplines and institutions. Citations to these articles through September 2016 were extracted from Thomson Reuters Web of Science. Subsequent journal article citation counts were significantly higher (P analysis, the strongest independent predictors of the number of citations were authors from multiple countries (β = 9.14, P = .002), a nonuniversity collaborator (β = 4.80, P = .082), and at least seven authors (β = 4.11, P = .038). With respect to subsequent journal article citations, various forms of collaboration are associated with greater scholarly impact of published radiology research. To enhance the relevance of their research, radiology investigators are encouraged to pursue collaboration across traditional disciplinary, institutional, and geographic boundaries. Copyright © 2017 American College of Radiology. Published by Elsevier Inc. All rights reserved.

  6. 100 classic papers of interventional radiology: A citation analysis.

    Science.gov (United States)

    Crockett, Matthew T; Browne, Ronan Fj; MacMahon, Peter J; Lawler, Leo

    2015-04-28

    To define the 100 citation classic papers of interventional radiology. Using the database of Journal Citation Reports the 40 highest impact factor radiology journals were chosen. From these journals the 100 most cited interventional radiology papers were chosen and analysed. The top paper received 2497 citations and the 100(th) paper 200 citations. The average number of citations was 320. Dates of publication ranged from 1953 - 2005. Most papers originated in the United States (n = 67) followed by Italy (n = 20) and France (n = 10). Harvard University (n = 18) and Osped Civile (n = 11) were the most prolific institutions. Ten journals produced all of the top 100 papers with "Radiology" and "AJR" making up the majority. SN Goldberg and T Livraghi were the most prolific authors. Nearly two thirds of the papers (n = 61) were published after 1990. This analysis identifies many of the landmark interventional radiology papers and provides a fascinating insight into the changing discourse within the field. It also identifies topics, authors and institutions which have impacted greatly on the specialty.

  7. International Journal of Occupational Medicine and Environmental Health in world documentation services: the SCOPUS based analysis of citation.

    Science.gov (United States)

    Przyłuska, Jolanta

    2006-01-01

    A high classification of scientific journals in the ranking of international transfer of knowledge is reflected by other researchers' citations. The International Journal of Occupational Medicine and Environmental Health (IJOMEH) is an international professional quarterly focused on such areas as occupational medicine, toxicology and environmental health edited in Poland. IJOMEH, published in English, is indexed in numerous world information services (MEDLINE, EMBASE, EBSCO, SCOPUS). This paper presents the contribution of IJOMEH publications to the world circulation of scientific information based on the citation analysis. The analysis, grounded on the SCOPUS database, assessed the frequency of citations in the years 1996-2005. Journals in which they have been cited were retrieved and their list is also included.

  8. Distinct Pattern Separation Related Transfer Functions in Human CA3/Dentate and CA1 Revealed Using High-Resolution fMRI and Variable Mnemonic Similarity

    Science.gov (United States)

    Lacy, Joyce W.; Yassa, Michael A.; Stark, Shauna M.; Muftuler, L. Tugan; Stark, Craig E. L.

    2011-01-01

    Producing and maintaining distinct (orthogonal) neural representations for similar events is critical to avoiding interference in long-term memory. Recently, our laboratory provided the first evidence for separation-like signals in the human CA3/dentate. Here, we extended this by parametrically varying the change in input (similarity) while…

  9. Citation bias and selective focus on positive findings in the literature on the serotonin transporter gene (5-HTTLPR), life stress and depression.

    Science.gov (United States)

    de Vries, Y A; Roest, A M; Franzen, M; Munafò, M R; Bastiaansen, J A

    2016-10-01

    Caspi et al.'s 2003 report that 5-HTTLPR genotype moderates the influence of life stress on depression has been highly influential but remains contentious. We examined whether the evidence base for the 5-HTTLPR-stress interaction has been distorted by citation bias and a selective focus on positive findings. A total of 73 primary studies were coded for study outcomes and focus on positive findings in the abstract. Citation rates were compared between studies with positive and negative results, both within this network of primary studies and in Web of Science. In addition, the impact of focus on citation rates was examined. In all, 24 (33%) studies were coded as positive, but these received 48% of within-network and 68% of Web of Science citations. The 38 (52%) negative studies received 42 and 23% of citations, respectively, while the 11 (15%) unclear studies received 10 and 9%. Of the negative studies, the 16 studies without a positive focus (42%) received 47% of within-network citations and 32% of Web of Science citations, while the 13 (34%) studies with a positive focus received 39 and 51%, respectively, and the nine (24%) studies with a partially positive focus received 14 and 17%. Negative studies received fewer citations than positive studies. Furthermore, over half of the negative studies had a (partially) positive focus, and Web of Science citation rates were higher for these studies. Thus, discussion of the 5-HTTLPR-stress interaction is more positive than warranted. This study exemplifies how evidence-base-distorting mechanisms undermine the authenticity of research findings.

  10. News from the Library : Citation counts: Web of Science @ CERN

    CERN Multimedia

    CERN Library

    2010-01-01

    The online information resources available to the CERN Community have recently increased by an additional database: Web of Science. WoS is a collection of several databases, among them the Science Citation Index, the Conference Proceedings Index and the Journal Citation Reports. The first two products allow you to perform subject, author and title searches, and most importantly you can obtain a list of papers citing a specific article, or navigate to the articles cited by the same article. Besides the retrieval and navigation features, analytical tools allow you to produce statistics and graphs describing the impact of a publication. Finally, the Journal Citation Reports database provides you with the well known – and often disputed – Impact Factor. Access to Web of Science: http://library.web.cern.ch/library/Library/wos.html Please provide feedback to library.desk@cern.ch.

  11. [Medycyna Pracy: the scopus-based analysis of citations].

    Science.gov (United States)

    Przyłuska, Jolanta

    2006-01-01

    Medycyna Pracy, a Polish bimonthly published since 1950, forms a long-standing documentation of studies carried out in the area of workers' health protection. The journal is primarily addressed to occupational health physicians and work hygiene specialists in Poland. It is indexed by numerous foreign information services (e.g., MEDLINE, EMBASE, BIOSIS PREVIEWS, BIOLOGICAL ABSTRACTS, SCOPUS) and thus promotes Polish research in occupational medicine throughout the world. The quantitative analysis for the years 1996-2005, grounded on the SCOPUS database, presents an average number of citations concerning a given volume, frequency of citations, articles most frequently cited, and countries, in which articles published in Medycyna Pracy have been referred to. A growing number of citations observed in the recent years signify the importance of issues investigated and discussed in the journal as well as its role in the world-wide circulation of scientific information.

  12. Citation et allusion dans le Décaméron

    OpenAIRE

    Perrus, Claude

    2013-01-01

    Étant donné la complexité du réseau intertextuel présent dans le Décaméron, cette étude se borne à l'examen de quelques cas de citations, de réminiscences, et surtout d'allusions en relation avec la stratégie de l'auteur, la pratique allusiva occupant un large espace dans l'œuvre de Boccace. Y sont distinguées les citations présentes dans le discours auctorial (proemio, discours d'exorde et de conclusion des narrateurs) – discours de défense ou usage ludique voire parodique de la citation – e...

  13. Intensively managed young children with type 1 diabetes consume high-fat, low-fiber diets similar to age-matched controls.

    Science.gov (United States)

    Mehta, Sanjeev N; Volkening, Lisa K; Quinn, Nicolle; Laffel, Lori M B

    2014-05-01

    Despite significant emphasis on nutrition, older children with diabetes demonstrate poor dietary quality. We tested the hypothesis that dietary quality in young children with type 1 diabetes (T1D) would be better than age-matched children in the US population. Dietary data from children with T1D (n = 67) aged 2 to 12 years attending a pediatric diabetes clinic were compared with a nationally representative, age-matched sample from the National Health and Nutrition Examination Survey (NHANES; n = 1691). Multiple 24-hour dietary recalls were used. Recommended intakes were based on national guidelines, and dietary quality was assessed using the Healthy Eating Index-2005. More children with T1D were overweight or obese compared with children participating in NHANES (42% vs 30%, P = .04). Greater proportions of children with T1D met daily recommendations for vegetables (22% vs 13%, P = .03), whole grains (12% vs 5%, P = .005), and dairy (55% vs 36%, P = .001) compared with NHANES children, whereas similar proportions met daily fruit recommendations (40% vs 33%, P = .2). Less than one-third of all children limited total fat to recommended levels; children with T1D consumed more saturated fat than did NHANES children (14% vs 12% total energy intake, P = .0009). Fiber intakes were very low in both groups. Compared with NHANES children, children with T1D had higher Healthy Eating Index-2005 scores (59.6 vs 49.7, P = .0006) primarily because of lower intakes of added sugars. The nutritional intake of young children with T1D remains suboptimal in the contemporary era of diabetes management. Despite focused nutrition management, young children with T1D consume high-fat, low-fiber diets comparable with youth in the general population. Copyright © 2014 Elsevier Inc. All rights reserved.

  14. A Survey on Characteristics of Core Latin Journals in Scientific Output of Faculty Members of Tehran University in Accordance to ISI Citations and JCR Impact Factor During 1990-2009

    Directory of Open Access Journals (Sweden)

    Fatemeh Jafari

    2010-12-01

    Full Text Available The present study intends to investigate characteristics of core Latin journals in scientific output of faculty members of Tehran University (Faculties of Humanities, Psychology and Education, Social Science and Art indexed in A&HCI, SSCI (Thomson Reuters according to ISI citations and, JCR impact factor. 5434 citations to 194 articles were used as sample. Citation analysis was employed. Core journals were established according to Bradford law. Research findings reveal that out of 5434 citations, 3230 (59/44% citations belong to periodicals. Also due to interdisciplinary differences, in 50 % majors, periodicals were cited more than other information sources. Findings also indicate that there are similarities between the core journals and JCR journals. Comparison of impact factor average of core journals with impact factor average of JCR journals shows that average impact factor of core journals exceeds impact factor average of JCR journals in related fields

  15. How accessibility influences citation counts: The case of citations to the full text articles available from ResearchGate

    Directory of Open Access Journals (Sweden)

    Mohammad Sababi

    2017-08-01

    Full Text Available It is generally believed that the number of citations to an article can positively be correlated to its free online availability. In the present study, we investigated the possible impact of academic social networks on the number of citations. We chose the social web service “ResearchGate” as a case. This website acts both as a social network to connect researchers, and at the same time, as an open access repository to publish post-print version of the accepted manuscripts and final versions of open access articles. We collected the data of 1823 articles published by the authors from four different universities. By analyzing these data, we showed that although different levels of full text availability are observed for the four universities, there is always a significant positive correlation between full text availability and the citation count. Moreover, we showed that both post-print version and publisher’s version (i.e., final published version of the archived manuscripts receive more citations than non-OA articles, and the difference in the citation counts of post-print manuscripts and publisher’s version articles is nonsignificant.

  16. Cultural and Technological Issues and Solutions for Geodynamics Software Citation

    Science.gov (United States)

    Heien, E. M.; Hwang, L.; Fish, A. E.; Smith, M.; Dumit, J.; Kellogg, L. H.

    2014-12-01

    Computational software and custom-written codes play a key role in scientific research and teaching, providing tools to perform data analysis and forward modeling through numerical computation. However, development of these codes is often hampered by the fact that there is no well-defined way for the authors to receive credit or professional recognition for their work through the standard methods of scientific publication and subsequent citation of the work. This in turn may discourage researchers from publishing their codes or making them easier for other scientists to use. We investigate the issues involved in citing software in a scientific context, and introduce features that should be components of a citation infrastructure, particularly oriented towards the codes and scientific culture in the area of geodynamics research. The codes used in geodynamics are primarily specialized numerical modeling codes for continuum mechanics problems; they may be developed by individual researchers, teams of researchers, geophysicists in collaboration with computational scientists and applied mathematicians, or by coordinated community efforts such as the Computational Infrastructure for Geodynamics. Some but not all geodynamics codes are open-source. These characteristics are common to many areas of geophysical software development and use. We provide background on the problem of software citation and discuss some of the barriers preventing adoption of such citations, including social/cultural barriers, insufficient technological support infrastructure, and an overall lack of agreement about what a software citation should consist of. We suggest solutions in an initial effort to create a system to support citation of software and promotion of scientific software development.

  17. Characteristics associated with citation rate of the medical literature.

    Directory of Open Access Journals (Sweden)

    Abhaya V Kulkarni

    Full Text Available BACKGROUND: The citation rate for articles is viewed as a measure of their importance and impact; however, little is known about what features of articles are associated with higher citation rate. METHODOLOGY/PRINCIPAL FINDINGS: We conducted a cohort study of all original articles, regardless of study methodology, published in the Lancet, JAMA, and New England Journal of Medicine, from October 1, 1999 to March 31, 2000. We identified 328 articles. Two blinded, independent reviewers extracted, in duplicate, nine variables from each article, which were analyzed in both univariable and multivariable linear least-squares regression models for their association with the annual rate of citations received by the article since publication. A two-way interaction between industry funding and an industry-favoring result was tested and found to be significant (p = 0.02. In our adjusted analysis, the presence of industry funding and an industry-favoring result was associated with an increase in annual citation rate of 25.7 (95% confidence interval, 8.5 to 42.8 compared to the absence of both industry funding and industry-favoring results. Higher annual rates of citation were also associated with articles dealing with cardiovascular medicine (13.3 more; 95% confidence interval, 3.9 to 22.3 and oncology (12.6 more; 95% confidence interval, 1.2 to 24.0, articles with group authorship (11.1 more; 95% confidence interval, 2.7 to 19.5, larger sample size and journal of publication. CONCLUSIONS/SIGNIFICANCE: Large trials, with group authorship, industry-funded, with industry-favoring results, in oncology or cardiology were associated with greater subsequent citations.

  18. Editorial - Wikipedia popularity from a citation analysis point of view

    OpenAIRE

    Alireza Noruzi

    2009-01-01

    This study aims to provide an overview of the citation rate of Wikipedia since its launch in 2004. It is worth noting that since its inception Wikipedia, the free international multi-lingual encyclopedia, has been subject to criticism (Fasoldt, 2004; Orlowski, 2005; Lipczynska, 2005). Wikipedia as a popular web resource appears in response to every keyword search on Google. One way to test the popularity of a web resource is to use citation analysis method to predict to what extend it is cite...

  19. Research paper citation record keeping: it is not for wimps.

    Science.gov (United States)

    Dodson, M V

    2008-10-01

    In an era in which academic institutions are held more accountable, a problem, which does not seem to have an immediate resolution, exists: how does one demonstrate the quality of one's work? Specifically, how does one show that his or her research is making an impact and is thought to be important? A variety of measures of scientific journal article importance, reflected mostly by citation analyses, have been focused on as being potential gold standards. However, although several measures have been reported, keeping a record of citation of individual research papers, primarily due to the effort involved in finding accurate information, is not for wimps.

  20. Document co-citation analysis to enhance transdisciplinary research.

    Science.gov (United States)

    Trujillo, Caleb M; Long, Tammy M

    2018-01-01

    Specialized and emerging fields of research infrequently cross disciplinary boundaries and would benefit from frameworks, methods, and materials informed by other fields. Document co-citation analysis, a method developed by bibliometric research, is demonstrated as a way to help identify key literature for cross-disciplinary ideas. To illustrate the method in a useful context, we mapped peer-recognized scholarship related to systems thinking. In addition, three procedures for validation of co-citation networks are proposed and implemented. This method may be useful for strategically selecting information that can build consilience about ideas and constructs that are relevant across a range of disciplines.

  1. Bibliometric Analysis of the Citation Patterns in Chinese Librarianship: an International Electronic Journal

    Directory of Open Access Journals (Sweden)

    Kotti Thavamani

    2015-06-01

    Full Text Available This paper analyzed the citation patterns in the Chinese Librarianship: An International Electronic Journal (CLIEJ. A total of 142 articles and 2,229 citations were examined to ascertain the contributions by year, citation patterns by period, contributions by forms, authorship patterns, and ranking of journals by citation numbers. 2012 and 2013 were the most productive years of CLIEJ. 47 articles (33.098% top the list with 11-20 citations. A total of 3,231 authors were identified in the 2,229 citations. 2013 was the year with 344 (15.433% citations. Most of the citations (1,126; 50.515% were from journal articles. 1,684 (52.120% of the total citations were from journal articles with multiple authors.

  2. Costa Rica publications in the Science Citation Index Expanded: a bibliometric analysis for 1981-2010.

    Science.gov (United States)

    Monge-Nájera, Julián; Ho, Yuh-Shan

    2012-12-01

    Despite of its small size, the Central American country of Costa Rica is internationally recognized as one of the world leaders in conservation and as the Central American leader in science. There have been no recent studies on the country's scientific production. The objective of this study was to analyze the Costa Rican scientific output as represented in the Science Citation Index Expanded. All documents with "Costa Rica" in the address field from 1981 to 2010 were included (total 6 801 publications). Articles (79%) were more frequent than other types of publication and were mostly in English (83%). Revista de Biología Tropical published the most articles (17%), followed by Toxicon and Turrialba (2.5%). The New England Journal of Medicine had the highest impact factor (53.484) with nine articles. Of 5 343 articles with known institutional address, 63%were internationally collaborative articles (most with the USA) with h index 91 and citation per publication 18. A total of 81% of all articles were inter-institutionally collaborative articles, led by the Universidad de Costa Rica. This reflects research and education agreements among these countries. Universidad de Costa Rica ranked top one in inter-institutionally collaborative articles, the rank of the total inter-institutionally collaborative articles, and the rank of first author articles and corresponding author articles. Studied subjects and journals in our sample are in agreement with dominant science fields and journals in Costa Rica. Articles with the highest citation were published in New England Journal of Medicine. The largest citation of medical articles reflects the general interest and wider readership of this subject. All corresponding and first authors of the high impact articles were not from Costa Rica. In conclusion, the scientific output of Costa Rican authors is strong in the areas related to conservation but the impact is higher for biomedical articles, and Costa Rican authors need to

  3. Costa Rica Publications in the Science Citation Index Expanded:: A bibliometric analysis for 1981-2010

    Directory of Open Access Journals (Sweden)

    Julián Monge-Nájera

    2012-12-01

    Full Text Available Despite of its small size, the Central American country of Costa Rica is internationally recognized as one of the world leaders in conservation and as the Central American leader in science. There have been no recent studies on the country’s scientific production. The objective of this study was to analyze the Costa Rican scientific output as represented in the Science Citation Index Expanded. All documents with “Costa Rica” in the address field from 1981 to 2010 were included (total 6 801 publications. Articles (79% were more frequent than other types of publication and were mostly in English (83%. Revista de Biología Tropical published the most articles (17%, followed by Toxicon and Turrialba (2.5%. The New England Journal of Medicine had the highest impact factor (53.484 with nine articles. Of 5 343 articles with known institutional address, 63%were internationally collaborative articles (most with the USA with h index 91 and citation per publication 18. A total of 81% of all articles were inter-institutionally collaborative articles, led by the Universidad de Costa Rica. This reflects research and education agreements among these countries. Universidad de Costa Rica ranked top one in inter-institutionally collaborative articles, the rank of the total inter-institutionally collaborative articles, and the rank of first author articles and corresponding author articles. Studied subjects and journals in our sample are in agreement with dominant science fields and journals in Costa Rica. Articles with the highest citation were published in New England Journal of Medicine. The largest citation of medical articles reflects the general interest and wider readership of this subject. All corresponding and first authors of the high impact articles were not from Costa Rica. In conclusion, the scientific output of Costa Rican authors is strong in the areas related to conservation but the impact is higher for biomedical articles, and Costa Rican

  4. Citation Analysis of Keratoconus 1900-2013: The Most Influential Publications, Authors, Institutions, and Journals.

    Science.gov (United States)

    Ali, Noor Q; Patel, Dipika V; Lockington, David; McGhee, Charles N J

    2014-01-01

    The objectives of this study were to identify the 250 most highly cited publications on keratoconus and to identify trends in topics and distinguish the most influential authors, journals, and institutions in the field. This was a database study. The authors searched the Web of Science database using the keyword "keratoconus." The results were refined to articles and reviews only, years 1900 to 2013, and sorted by citation count. The 250 most cited, relevant publications to keratoconus were identified, and citation analysis of the authors, topics, journals, institutions, and countries was performed. From the 3030 records identified, the most cited 250 publications were all published in the last 60 years. Publication numbers rose exponentially from the early 1960s, and citation rates have mirrored this. For the 250 most cited publications, the top 25 authors contributed to 60.2% (mean, 6.1 ± 2.3 publications per author), and the top 25 institutions contributed to 57.6%. The mean citation count per article was 80.7 ± 62.4. Twelve journal titles contained 89.2% of the 250 most cited articles, and greater than 47.6% of publications originated from the United States. The major subtopics were corneal transplantation (31.2%), diagnostic instruments (17.6%), and structural and molecular analyses (17.6%). There has been an exponential increase in the body of knowledge on keratoconus in the last 60 years. This interest has been driven by refractive surgery related keratectasia, the emergence of better imaging technologies, and effective treatments.

  5. The Oklahoma Mesonet: A Pilot Study of Environmental Sensor Data Citations

    Directory of Open Access Journals (Sweden)

    Betsy Van der Veer Martens

    2017-10-01

    Full Text Available This pilot study of 110 scientific papers utilizing environmental sensor data from the Oklahoma Mesonet during its first two decades of operations demonstrates the diversity of potential purposes in scientific research for a robust, rigorously maintained, accessible source of environmental sensor data, as well as the challenges involved in identifying uses of that data within scientific papers. The study authors selected three publication years (1995, 2005, 2015 from an extensive corpus of peer-reviewed journal publications, identified each paper’s specific citation of and uses of the Mesonet’s environmental sensor data, and derived a typology of those usages (assimilation, experimentation, observation, simulation, utilization, validation found to be most common. The rapid increase in data assimilation research projects today is discussed in terms of the difficulty and importance of correct attribution to individual data sources in these complex research projects. The study examines the possible role played by highly-cited papers that describe the quality assurance procedures in sensor data sources, which may serve as surrogates to signal the quality of the data provided by such sources, and which may also provide a useful contribution towards understanding data citation as a special form of scholarly citation.

  6. How the scientific community reacts to newly submitted preprints: article downloads, Twitter mentions, and citations.

    Science.gov (United States)

    Shuai, Xin; Pepe, Alberto; Bollen, Johan

    2012-01-01

    We analyze the online response to the preprint publication of a cohort of 4,606 scientific articles submitted to the preprint database arXiv.org between October 2010 and May 2011. We study three forms of responses to these preprints: downloads on the arXiv.org site, mentions on the social media site Twitter, and early citations in the scholarly record. We perform two analyses. First, we analyze the delay and time span of article downloads and Twitter mentions following submission, to understand the temporal configuration of these reactions and whether one precedes or follows the other. Second, we run regression and correlation tests to investigate the relationship between Twitter mentions, arXiv downloads, and article citations. We find that Twitter mentions and arXiv downloads of scholarly articles follow two distinct temporal patterns of activity, with Twitter mentions having shorter delays and narrower time spans than arXiv downloads. We also find that the volume of Twitter mentions is statistically correlated with arXiv downloads and early citations just months after the publication of a preprint, with a possible bias that favors highly mentioned articles.

  7. How the scientific community reacts to newly submitted preprints: article downloads, Twitter mentions, and citations.

    Directory of Open Access Journals (Sweden)

    Xin Shuai

    Full Text Available We analyze the online response to the preprint publication of a cohort of 4,606 scientific articles submitted to the preprint database arXiv.org between October 2010 and May 2011. We study three forms of responses to these preprints: downloads on the arXiv.org site, mentions on the social media site Twitter, and early citations in the scholarly record. We perform two analyses. First, we analyze the delay and time span of article downloads and Twitter mentions following submission, to understand the temporal configuration of these reactions and whether one precedes or follows the other. Second, we run regression and correlation tests to investigate the relationship between Twitter mentions, arXiv downloads, and article citations. We find that Twitter mentions and arXiv downloads of scholarly articles follow two distinct temporal patterns of activity, with Twitter mentions having shorter delays and narrower time spans than arXiv downloads. We also find that the volume of Twitter mentions is statistically correlated with arXiv downloads and early citations just months after the publication of a preprint, with a possible bias that favors highly mentioned articles.

  8. Last but not Least: Additional Positional Effects on Citation and Readership in arXiv

    CERN Document Server

    Haque, Asif-ul; 10.1002/asi.21428

    2010-01-01

    We continue investigation of the effect of position in announcements of newly received articles, a single day artifact, with citations received over the course of ensuing years. Earlier work [arXiv:0907.4740, arXiv:0805.0307] focused on the "visibility" effect for positions near the beginnings of announcements, and on the "self-promotion" effect associated to authors intentionally aiming for these positions, with both found correlated to a later enhanced citation rate. Here we consider a "reverse-visibility" effect for positions near the ends of announcements, and on a "procrastination" effect associated to submissions made within the 20 minute period just before the daily deadline. For two large subcommunities of theoretical high energy physics, we find a clear "reverse-visibility" effect, in which articles near the ends of the lists receive a boost in both short-term readership and long-term citations, almost comparable in size to the "visibility" effect documented earlier. For one of those subcommunities, ...

  9. How the Scientific Community Reacts to Newly Submitted Preprints: Article Downloads, Twitter Mentions, and Citations

    Science.gov (United States)

    Shuai, Xin; Pepe, Alberto; Bollen, Johan

    2012-01-01

    We analyze the online response to the preprint publication of a cohort of 4,606 scientific articles submitted to the preprint database arXiv.org between October 2010 and May 2011. We study three forms of responses to these preprints: downloads on the arXiv.org site, mentions on the social media site Twitter, and early citations in the scholarly record. We perform two analyses. First, we analyze the delay and time span of article downloads and Twitter mentions following submission, to understand the temporal configuration of these reactions and whether one precedes or follows the other. Second, we run regression and correlation tests to investigate the relationship between Twitter mentions, arXiv downloads, and article citations. We find that Twitter mentions and arXiv downloads of scholarly articles follow two distinct temporal patterns of activity, with Twitter mentions having shorter delays and narrower time spans than arXiv downloads. We also find that the volume of Twitter mentions is statistically correlated with arXiv downloads and early citations just months after the publication of a preprint, with a possible bias that favors highly mentioned articles. PMID:23133597

  10. Similarity transformations of MAPs

    Directory of Open Access Journals (Sweden)

    Andersen Allan T.

    1999-01-01

    Full Text Available We introduce the notion of similar Markovian Arrival Processes (MAPs and show that the event stationary point processes related to two similar MAPs are stochastically equivalent. This holds true for the time stationary point processes too. We show that several well known stochastical equivalences as e.g. that between the H 2 renewal process and the Interrupted Poisson Process (IPP can be expressed by the similarity transformations of MAPs. In the appendix the valid region of similarity transformations for two-state MAPs is characterized.

  11. The impact factor of an open access journal does not contribute to an article’s citations [version 1; referees: 2 approved

    Directory of Open Access Journals (Sweden)

    SK Chua

    2017-03-01

    Full Text Available Background Citations of papers are positively influenced by the journal’s impact factor (IF. For non-open access (non-OA journals, this influence may be due to the fact that high-IF journals are more often purchased by libraries, and are therefore more often available to researchers, than low-IF journals. This positive influence has not, however, been shown specifically for papers published in open access (OA journals, which are universally accessible, and do not need library purchase. It is therefore important to ascertain if the IF influences citations in OA journals too. Methods 203 randomized controlled trials (102 OA and 101 non-OA published in January 2011 were included in the study. Five-year citations for papers published in OA journals were compared to those for non-OA journals. Source papers were derived from PubMed. Citations were retrieved from Web of Science, Scopus, and Google Scholar databases. The Thompson-Reuter’s IF was used. Results OA journals were found to have significantly more citations overall compared to non-OA journals (median 15.5 vs 12, p=0.039. The IF did not correlate with citations for OA journals (Spearman’s rho =0.187, p=0.60. The increase in the citations with increasing IF was minimal for OA journals (beta coefficient = 3.346, 95% CI -0.464, 7.156, p=0.084. In contrast, the IF did show moderate correlation with citations for articles published in non-OA journals (Spearman’s rho=0.514, p<0.001. The increase in the number of citations was also significant (beta coefficient = 4.347, 95% CI 2.42, 6.274, p<0.001. Conclusion It is better to publish in an OA journal for more citations. It may not be worth paying high publishing fees for higher IF journals, because there is minimal gain in terms of increased number of citations. On the other hand, if one wishes to publish in a non-OA journal, it is better to choose one with a high IF.

  12. Recognition of Emerging Technology Trends. Class-selective study of citations in the U.S. Patent Citation Network

    CERN Document Server

    Bruck, Péter; Szente, Judit; Tobochnik, Jan; Érdi, Péter

    2016-01-01

    By adopting a citation-based recursive ranking method for patents the evolution of new fields of technology can be traced. Specifically, it is demonstrated that the laser / inkjet printer technology emerged from the recombination of two existing technologies: sequential printing and static image production. The dynamics of the citations coming from the different "precursor" classes illuminates the mechanism of the emergence of new fields and give the possibility to make predictions about future technological development. For the patent network the optimal value of the PageRank damping factor is close to 0.5; the application of d=0.85 leads to unacceptable ranking results.

  13. Similarity after Goodman

    NARCIS (Netherlands)

    Decock, L.B.; Douven, I.

    2011-01-01

    In a famous critique, Goodman dismissed similarity as a slippery and both philosophically and scientifically useless notion. We revisit his critique in the light of important recent work on similarity in psychology and cognitive science. Specifically, we use Tversky's influential set-theoretic

  14. Judgments of brand similarity

    NARCIS (Netherlands)

    Bijmolt, THA; Wedel, M; Pieters, RGM; DeSarbo, WS

    This paper provides empirical insight into the way consumers make pairwise similarity judgments between brands, and how familiarity with the brands, serial position of the pair in a sequence, and the presentation format affect these judgments. Within the similarity judgment process both the

  15. New Similarity Functions

    DEFF Research Database (Denmark)

    Yazdani, Hossein; Ortiz-Arroyo, Daniel; Kwasnicka, Halina

    2016-01-01

    spaces, in addition to their similarity in the vector space. Prioritized Weighted Feature Distance (PWFD) works similarly as WFD, but provides the ability to give priorities to desirable features. The accuracy of the proposed functions are compared with other similarity functions on several data sets......In data science, there are important parameters that affect the accuracy of the algorithms used. Some of these parameters are: the type of data objects, the membership assignments, and distance or similarity functions. This paper discusses similarity functions as fundamental elements in membership...... assignments. The paper introduces Weighted Feature Distance (WFD), and Prioritized Weighted Feature Distance (PWFD), two new distance functions that take into account the diversity in feature spaces. WFD functions perform better in supervised and unsupervised methods by comparing data objects on their feature...

  16. A COMPARISON OF SEMANTIC SIMILARITY MODELS IN EVALUATING CONCEPT SIMILARITY

    Directory of Open Access Journals (Sweden)

    Q. X. Xu

    2012-08-01

    Full Text Available The semantic similarities are important in concept definition, recognition, categorization, interpretation, and integration. Many semantic similarity models have been established to evaluate semantic similarities of objects or/and concepts. To find out the suitability and performance of different models in evaluating concept similarities, we make a comparison of four main types of models in this paper: the geometric model, the feature model, the network model, and the transformational model. Fundamental principles and main characteristics of these models are introduced and compared firstly. Land use and land cover concepts of NLCD92 are employed as examples in the case study. The results demonstrate that correlations between these models are very high for a possible reason that all these models are designed to simulate the similarity judgement of human mind.

  17. A Citation Analysis of Australian Information Systems Researchers: Towards a New ERA?

    Directory of Open Access Journals (Sweden)

    Roger Clarke

    2008-05-01

    Full Text Available Citation analysis is a potentially valuable means of assessing the contributions of researchers, in Information Systems (IS as in other disciplines. In particular, a combination of raw counts and deeper analysis of citation data can deliver insights into the impact of a researcher's publications on other researchers. Despite this potential, the limited literature in the IS discipline has paid very little attention to the use of citation analysis for this purpose. Meanwhile, the federal department responsible for education funding has convinced successive federal governments to develop research quality measures that can be used as a basis for differential funding. The Howard Government's proposed Research Quality Framework (RQF has been abandoned, but a number of aspects of it survive within the Rudd Government's Excellence in Research for Australia (ERA initiative. The ERA also appears likely to involve a highly formalised process whereby 'research groupings' within individual universities will be evaluated, with (as yet unclear impacts on the distribution of research funding. Funding agencies have an interest in score-keeping, whether or not their enthusiasm is shared by Australian researchers. It is therefore highly advisable that Australian disciplines, and especially less well-established and powerful disciplines like Information Systems, achieve a clear understanding of their performance as indicated by the available measurement techniques applied to the available data. This paper reports on citation analysis using data from both the longstanding Thomson/ISI collection and the more recently developed Google Scholar service. Few Australian IS researchers have achieved scores of any great significance in the Thomson/ISI collection, whereas the greater depth available in Google Scholar provides a more realistic picture. Quality assessment of the Thomson/ISI collection shows it to be seriously inappropriate for relatively new disciplines

  18. Results of a Citation Analysis of Knowledge Management in Education

    Science.gov (United States)

    Uzunboylu, Huseyin; Eris, Hasan; Ozcinar, Zehra

    2011-01-01

    The purpose of this study was to examine research and trends in knowledge management in education (KME) published in selected professional sources during the period 1990-2008. Citation analysis was used in this study to investigate documents related to KME, which were indexed in the Web of Science, Education Researches Information Center and…

  19. Page number not for citation purposes 1 Assessment of the ...

    African Journals Online (AJOL)

    Page number not for citation purposes 1 Assessment of the household availability of oral rehydration salt in rural Botswana. ... The health education and community sensitization efforts need to go beyond health facilities via other means like the media and community based approaches. Approaches aimed at improving the ...

  20. Citations to Wikipedia in Chemistry Journals: A Preliminary Study

    Science.gov (United States)

    Brazzeal, Bradley

    2011-01-01

    Wikipedia has been the subject of an increasing number of studies. Many of these have focused on the quality of Wikipedia articles and the use of Wikipedia by students. Little research has focused on the use of Wikipedia by scholars. This study helps to fill that gap by examining citations to Wikipedia in chemistry journals from three major…

  1. Who's Who in Introductory Psychology Textbooks: A Citation Analysis Redux

    Science.gov (United States)

    Griggs, Richard A.; Christopher, Andrew N.

    2016-01-01

    It is important to assess periodically how introductory textbooks portray our discipline because introductory psychology is the most popular psychology course, almost all teachers use textbooks for it, and textbooks play a major role in defining the course for students. To do so, past studies have used textbook citation analyses. We analyzed…

  2. Geopressured geothermal bibliography. Volume I. Citation extracts. Second edition

    Energy Technology Data Exchange (ETDEWEB)

    Sepehrnoori, K.; Carter, F.; Schneider, R.; Street, S.; McGill, K.

    1983-05-01

    This annoted bibliography contains 1131 citations. It represents reports, papers, and articles appearing over the past eighteen years covering topics from the scientific and technical aspects of geopressured geothermal reservoirs to the social, environmental, and legal considerations of exploiting those reservoirs for their energy resources. Six indexes include: author, conference title, descriptor, journal title, report number, and sponsor. (MHR)

  3. Citation Behaviors Observed in Japanese EFL Students' Argumentative Writing

    Science.gov (United States)

    Kamimura, Taeko

    2014-01-01

    Effective use of outside source texts is one of the key components of successful academic writing. This study aims at clarifying Japanese university EFL students' citation behaviors in producing argumentative writing. Twenty-six Japanese university EFL students wrote an argumentative essay. Their essays were analyzed quantitatively by six…

  4. GENERAL MECHANISMS OF CITATION SYSTEM OF SCIENTIFIC ARTICLES

    Directory of Open Access Journals (Sweden)

    Віктор Дмитрович ГОГУНСЬКИЙ

    2016-02-01

    Full Text Available Transformation competitive environment of higher education in the creation of effective mechanisms of management research encourages research teams and individual researchers to analyze their activity Publication search methods for improvement of citations of scientific publications. The paper analyzed the life cycle of scientific publications and show that the way to promote scientific articles in the world community inherent properties of Markov processes. Application of Markov chains allows top ground the need for active participation of the authors in the distribution of its publications in different scientometric databases, repositories of scientific and social networks. Markov model to describe decomposition of scientists made certain discrete states and proposed a schematic diagram of transitions between them. The model's 5A fully reflect the properties of the system. Communication influences the probability of changing system states with consistent movement along the trajectory from a lack of information about the publication to familiarize with it because of the positive attitude to state its citation. This is a must as well as a negative attitude to the publications. Proved that improve performance citation of scientific publications in the case of using Google Scholar, ORCID, Mendeley, Academia, ResearchGate, and others. The active participation of authors in their publications available in these systems leads to an increase in the proportion of articles that are available to colleagues in the global scientific community that is becoming one of the factors of increase in citations.

  5. Analysis of bibliometric indicators to determine citation bias

    Science.gov (United States)

    Publications from the 1995 to 2004 period (and cited throughout July 2013) were analyzed to determine if the plant species used in research studies influenced the number of citations that papers received. Bibliometric data of papers from 108 plant species were obtained for the research fields of Gen...

  6. 75 FR 76056 - FEDERAL REGISTER CITATION OF PREVIOUS ANNOUNCEMENT:

    Science.gov (United States)

    2010-12-07

    ... From the Federal Register Online via the Government Publishing Office SECURITIES AND EXCHANGE COMMISSION Sunshine Act Meeting FEDERAL REGISTER CITATION OF PREVIOUS ANNOUNCEMENT: STATUS: Closed meeting. PLACE: 100 F Street, NE., Washington, DC. DATE AND TIME OF PREVIOUSLY ANNOUNCED MEETING: Thursday...

  7. Important Literature in Endocrinology: Citation Analysis and Historial Methodology.

    Science.gov (United States)

    Hurt, C. D.

    1982-01-01

    Results of a study comparing two approaches to the identification of important literature in endocrinology reveals that association between ranking of cited items using the two methods is not statistically significant and use of citation or historical analysis alone will not result in same set of literature. Forty-two sources are appended. (EJS)

  8. Discovering Information Use in Agricultural Economics: A Citation Study

    Science.gov (United States)

    Zhang, Li

    2007-01-01

    This citation study investigated the research needs and activity of U.S. agricultural economists. Journals were the dominant format of cited sources. Books, government publications, and working papers formed the other important types of references, whereas electronic sources were sparsely used. Subject scatter in this interdisciplinary field was…

  9. Fat Grafting: A Citation Analysis of the Seminal Articles

    Directory of Open Access Journals (Sweden)

    Cormac W. Joyce, MB, BCh

    2015-01-01

    Conclusions: The scientific relevance of a published work is reflected in the number of citations from peers that it receives. Therefore, the 100 most-cited papers in fat grafting have been the most influential articles on this field, and they are likely to be the ones that are remembered most.

  10. Citation analysis of doctoral theses submitted to the department of ...

    African Journals Online (AJOL)

    Most of the citations were to journals and books. Majority of the sources cited were old. Also, most reference materials were foreign in origin. The study highlights the need for more grants to ease the purchase of more recent and relevant materials for research work. Indigenous publishers are also encouraged to motivate ...

  11. Citation Analysis of Skinner's "Verbal Behavior:" 1984-2004

    Science.gov (United States)

    Dymond, S.; O'Hora, D.; Whelan, R.; O'Donovan, A.

    2006-01-01

    The present study undertook an updated citation analysis of Skinner's (1957) "Verbal Behavior". All articles that cited "Verbal Behavior" between 1984 and 2004 were recorded and content analyzed into one of five categories; four empirical and one nonempirical. Of the empirical categories, studies that employed a verbal operant from Skinner's…

  12. Cyber-Bullying in School Settings: A Research Citation Analysis

    Science.gov (United States)

    Piotrowski, Chris

    2011-01-01

    Research on the topic of cyber-bullying has proliferated over the past decade, particularly on its impact on school-aged children. Thus, it would be of interest to examine the scope and extent of research interest in the topic in scholarly publications. This paper reports on a reference citation analysis of the database PsycINFO, using…

  13. A Review of Citation Analysis Methodologies for Collection Management

    Science.gov (United States)

    Hoffmann, Kristin; Doucette, Lise

    2012-01-01

    While there is a considerable body of literature that presents the results of citation analysis studies, most researchers do not provide enough detail in their methodology to reproduce the study, nor do they provide rationale for methodological decisions. In this paper, we review the methodologies used in 34 recent articles that present a…

  14. Adding Value to Scholarly Journals through a Citation Indexing System

    Science.gov (United States)

    Zainab, A. N.; Abrizah, A.; Raj, R. G.

    2013-01-01

    Purpose: The purpose of this paper is to relate the problems identified about scholarly journal publishing in Malaysia to establish motivation for the system development; to describe the design of MyCite, a Malaysian citation indexing system and to highlight the added value to journals and articles indexed through the generation of bibliometrics…

  15. Expression of globulin-2, a member of the cupin superfamily of proteins with similarity to known food allergens, is increased under high temperature regimen during wheat grain development

    Science.gov (United States)

    Twenty-three expressed sequence tags (ESTs)from the US spring wheat Butte 86 were identified that encode proteins similar to a globulin-2 protein from maize embryos. The ESTs assembled into three contigs, two of which include the entire coding region for the mature protein. The encoded proteins co...

  16. The semantic similarity ensemble

    Directory of Open Access Journals (Sweden)

    Andrea Ballatore

    2013-12-01

    Full Text Available Computational measures of semantic similarity between geographic terms provide valuable support across geographic information retrieval, data mining, and information integration. To date, a wide variety of approaches to geo-semantic similarity have been devised. A judgment of similarity is not intrinsically right or wrong, but obtains a certain degree of cognitive plausibility, depending on how closely it mimics human behavior. Thus selecting the most appropriate measure for a specific task is a significant challenge. To address this issue, we make an analogy between computational similarity measures and soliciting domain expert opinions, which incorporate a subjective set of beliefs, perceptions, hypotheses, and epistemic biases. Following this analogy, we define the semantic similarity ensemble (SSE as a composition of different similarity measures, acting as a panel of experts having to reach a decision on the semantic similarity of a set of geographic terms. The approach is evaluated in comparison to human judgments, and results indicate that an SSE performs better than the average of its parts. Although the best member tends to outperform the ensemble, all ensembles outperform the average performance of each ensemble's member. Hence, in contexts where the best measure is unknown, the ensemble provides a more cognitively plausible approach.

  17. Four plant defensins from an indigenous South African Brassicaceae species display divergent activities against two test pathogens despite high sequence similarity in the encoding genes

    Directory of Open Access Journals (Sweden)

    de Beer Abré

    2011-10-01

    Full Text Available Abstract Background Plant defensins are an important component of the innate defence system of plants where they form protective antimicrobial barriers between tissue types of plant organs as well as around seeds. These peptides also have other activities that are important for agricultural applications as well as the medical sector. Amongst the numerous plant peptides isolated from a variety of plant species, a significant number of promising defensins have been isolated from Brassicaceae species. Here we report on the isolation and characterization of four defensins from Heliophila coronopifolia, a native South African Brassicaceae species. Results Four defensin genes (Hc-AFP1-4 were isolated with a homology based PCR strategy. Analysis of the deduced amino acid sequences showed that the peptides were 72% similar and grouped closest to defensins isolated from other Brassicaceae species. The Hc-AFP1 and 3 peptides shared high homology (94% and formed a unique grouping in the Brassicaceae defensins, whereas Hc-AFP2 and 4 formed a second homology grouping with defensins from Arabidopsis and Raphanus. Homology modelling showed that the few amino acids that differed between the four peptides had an effect on the surface properties of the defensins, specifically in the alpha-helix and the loop connecting the second and third beta-strands. These areas are implicated in determining differential activities of defensins. Comparing the activities after recombinant production of the peptides, Hc-AFP2 and 4 had IC50 values of 5-20 μg ml-1 against two test pathogens, whereas Hc-AFP1 and 3 were less active. The activity against Botrytis cinerea was associated with membrane permeabilization, hyper-branching, biomass reduction and even lytic activity. In contrast, only Hc-AFP2 and 4 caused membrane permeabilization and severe hyper-branching against the wilting pathogen Fusarium solani, while Hc-AFP1 and 3 had a mild morphogenetic effect on the fungus

  18. Citation classics in central nervous system inflammatory demyelinating disease.

    Science.gov (United States)

    Kim, Jee-Eun; Park, Kang M; Kim, Yerim; Yoon, Dae Y; Bae, Jong S

    2017-06-01

    To identify and analyze the characteristics of the most influential articles about central nervous system (CNS) inflammatory demyelinating disease. The Institute for Scientific Information (ISI) Web of Science database and the 2014 Journal Citation Reports Science Edition were used to retrieve the top 100 cited articles on CNS inflammatory demyelinating disease. The citation numbers, journals, years of publication, authorships, article types, subjects and main issues were analyzed. For neuromyelitis optica (NMO), articles that were cited more than 100 times were regarded as a citation classic and described separately. The top 100 cited articles were published between 1972 and 2011 in 13 journals. The highest number of articles (n = 24) was published in Brain, followed by The New England Journal of Medicine (n = 21). The average number of citations was 664 (range 330-3,897), and 64% of the articles were from the United States and the United Kingdom. The majority of the top 100 cited articles were related to multiple sclerosis (n = 87), and only a few articles reported on other topics such as NMO (n = 9), acute disseminated encephalomyelitis (n = 2) and optic neuritis (n = 2). Among the top 100 cited articles, 77% were original articles. Forty-one citation classics were found for NMO. Our study provides a historical perspective on the research progress on CNS inflammatory demyelinating disease and may serve as a guide for important advances and trends in the field for associated researchers.

  19. Can tweets predict citations? Metrics of social impact based on Twitter and correlation with traditional metrics of scientific impact.

    Science.gov (United States)

    Eysenbach, Gunther

    2011-12-19

    Citations in peer-reviewed articles and the impact factor are generally accepted measures of scientific impact. Web 2.0 tools such as Twitter, blogs or social bookmarking tools provide the possibility to construct innovative article-level or journal-level metrics to gauge impact and influence. However, the relationship of the these new metrics to traditional metrics such as citations is not known. (1) To explore the feasibility of measuring social impact of and public attention to scholarly articles by analyzing buzz in social media, (2) to explore the dynamics, content, and timing of tweets relative to the publication of a scholarly article, and (3) to explore whether these metrics are sensitive and specific enough to predict highly cited articles. Between July 2008 and November 2011, all tweets containing links to articles in the Journal of Medical Internet Research (JMIR) were mined. For a subset of 1573 tweets about 55 articles published between issues 3/2009 and 2/2010, different metrics of social media impact were calculated and compared against subsequent citation data from Scopus and Google Scholar 17 to 29 months later. A heuristic to predict the top-cited articles in each issue through tweet metrics was validated. A total of 4208 tweets cited 286 distinct JMIR articles. The distribution of tweets over the first 30 days after article publication followed a power law (Zipf, Bradford, or Pareto distribution), with most tweets sent on the day when an article was published (1458/3318, 43.94% of all tweets in a 60-day period) or on the following day (528/3318, 15.9%), followed by a rapid decay. The Pearson correlations between tweetations and citations were moderate and statistically significant, with correlation coefficients ranging from .42 to .72 for the log-transformed Google Scholar citations, but were less clear for Scopus citations and rank correlations. A linear multivariate model with time and tweets as significant predictors (P < .001) could explain

  20. Authors attain comparable or slightly higher rates of citation publishing in an open access journal (CytoJournal) compared to traditional cytopathology journals - A five year (2007-2011) experience.

    Science.gov (United States)

    Frisch, Nora K; Nathan, Romil; Ahmed, Yasin K; Shidham, Vinod B

    2014-01-01

    The era of Open Access (OA) publication, a platform which serves to better disseminate scientific knowledge, is upon us, as more OA journals are in existence than ever before. The idea that peer-reviewed OA publication leads to higher rates of citation has been put forth and shown to be true in several publications. This is a significant benefit to authors and is in addition to another relatively less obvious but highly critical component of the OA charter, i.e. retention of the copyright by the authors in the public domain. In this study, we analyzed the citation rates of OA and traditional non-OA publications specifically for authors in the field of cytopathology. We compared the citation patterns for authors who had published in both OA and traditional non-OA peer-reviewed, scientific, cytopathology journals. Citations in an OA publication (CytoJournal) were analyzed comparatively with traditional non-OA cytopathology journals (Acta Cytologica, Cancer Cytopathology, Cytopathology, and Diagnostic Cytopathology) using the data from web of science citation analysis site (based on which the impact factors (IF) are calculated). After comparing citations per publication, as well as a time adjusted citation quotient (which takes into account the time since publication), we also analyzed the statistics after excluding the data for meeting abstracts. Total 28 authors published 314 publications as articles and meeting abstracts (25 authors after excluding the abstracts). The rate of citation and time adjusted citation quotient were higher for OA in the group where abstracts were included (P citation than the publications in the traditional non-OA journals in the field of cytopathology over a 5 year period (2007-2011). However, this increase was statistically insignificant if the meeting abstracts were excluded from the analysis. Overall, the rates of citation for OA and non-OA were slightly higher to comparable.