Microbial reductive transformation of phyllosilicate Fe(III) and U(VI) in fluvial subsurface sediments.

Science.gov (United States)

Lee, Ji-Hoon; Fredrickson, James K; Kukkadapu, Ravi K; Boyanov, Maxim I; Kemner, Kenneth M; Lin, Xueju; Kennedy, David W; Bjornstad, Bruce N; Konopka, Allan E; Moore, Dean A; Resch, Charles T; Phillips, Jerry L

2012-04-03

The microbial reduction of Fe(III) and U(VI) was investigated in shallow aquifer sediments collected from subsurface flood deposits near the Hanford Reach of the Columbia River in Washington State. Increases in 0.5 N HCl-extractable Fe(II) were observed in incubated sediments and (57)Fe Mössbauer spectroscopy revealed that Fe(III) associated with phyllosilicates and pyroxene was reduced to Fe(II). Aqueous uranium(VI) concentrations decreased in subsurface sediments incubated in sulfate-containing synthetic groundwater with the rate and extent being greater in sediment amended with organic carbon. X-ray absorption spectroscopy of bioreduced sediments indicated that 67-77% of the U signal was U(VI), probably as an adsorbed species associated with a new or modified reactive mineral phase. Phylotypes within the Deltaproteobacteria were more common in Hanford sediments incubated with U(VI) than without, and in U(VI)-free incubations, members of the Clostridiales were dominant with sulfate-reducing phylotypes more common in the sulfate-amended sediments. These results demonstrate the potential for anaerobic reduction of phyllosilicate Fe(III) and sulfate in Hanford unconfined aquifer sediments and biotransformations involving reduction and adsorption leading to decreased aqueous U concentrations.

Immobilization of cobalt by sulfate-reducing bacteria in subsurface sediments

Science.gov (United States)

Krumholz, Lee R.; Elias, Dwayne A.; Suflita, Joseph M.

2003-01-01

We investigated the impact of sulfate-reduction on immobilization of metals in subsurface aquifers. Co 2+ was used as a model for heavy metals. Factors limiting sulfate-reduction dependent Co 2+ immobilization were tested on pure cultures of sulfate-reducing bacteria, and in sediment columns from a landfill leachate contaminated aquifer. In the presence of 1 mM Co 2+ , the growth of pure cultures of sulfate-reducing bacteria was not impacted. Cultures of Desulfovibrio desulfuricans, Desulfotomaculum gibsoniae , and Desulfomicrobium hypogeia removed greater than 99.99% of the soluble Co 2+ when CoCl 2 was used with no chelators. The above cultures and Desulfoarcula baarsi removed 98-99.94% of the soluble Co(II) when the metal was complexed with the model ligand nitrilotriacetate (Co-NTA). Factors controlling the rate of sulfate-reduction based Co 2+ precipitation were investigated in sediment-cobalt mixtures. Several electron donors were tested and all but toluene accelerated soluble Co 2+ loss. Ethanol and formate showed the greatest stimulation. All complex nitrogen sources tested slowed and decreased the extent of Co 2+ removal from solution relative to formate-amended sediment incubations. A range of pH values were tested (6.35-7.81), with the more alkaline incubations exhibiting the largest precipitation of Co 2+ . The immobilization of Co 2+ in sediments was also investigated with cores to monitor the flow of Co 2+ through undisturbed sediments. An increase in the amount of Co 2+ immobilized as CoS was observed as sulfate reduction activity was stimulated in flow through columns. Both pure culture and sediment incubation data indicate that stimulation of sulfate reduction is a viable strategy in the immobilization of contaminating metals in subsurface systems.

Structure of Subsurface Sediments in the Scan Basin (Scotia Sea)

Science.gov (United States)

Schreider, Al. A.; Schreider, A. A.; Sazhneva, A. E.; Galindo-Zaldivar, J.; Ruano, P.; Maldonado, A.; Martos-Martin, Y.; Lobo, F.

2018-01-01

The structure of sediments in the Scotia Sea is used as a basis for reconstructing the geological history of its bottom in the Late Quaternary. The Scan Basin is one of the main elements of the topography of the southern Scotia Sea. Its formation played a considerable role in the fragmentation of the continent, which included the Bruce and Discovery banks. The main parameters of the sediment layer in the Scan Basin have been reconstructed by the present time, but its top part has not been studied. In this work, we analyze the first data obtained on the R/V Gesperidas with the use of a TOPAS PS 18/40 high-resolution seismic profilograph in 2012. Three layers in the subsurface sediments on the bottom of the Scan Basin were specified for the first time. The mean periods of their deposition in the Late Quaternary were determined as 115000 years for the first, 76000 years for the second, and 59 000 years for the third layer from the surface of the bottom. The duration of the total accumulation period of the three layers is about 250000 years.

Microbial biomass and activity in subsurface sediments from Vejen, Denmark

DEFF Research Database (Denmark)

Albrechtsen, Hans-Jørgen; Winding, Anne

1992-01-01

Subsurface sediment samples were collected from 4 to 31 m below landsurface in glacio-fluvial sediments from the Quaternary period. The samples were described in terms of pH, electrical conductivity, chloride concentration, organic matter content, and grain size distribution. Viable counts...... for mineralization of 14C-labelled compounds varied from 0.2 to 2.3 × 10−3 ml/(dpm · day) for acetate, and from 0 to 2.0 × 10−3 ml/(dpm · day) for phenol. Sediment texture influenced the total number of bacteria and potential for mineralization; with increasing content of clay and silt and decreasing content of sand...... a single abiotic parameter that could explain the variation of size and activity of the microbial population. The microbial data obtained in these geologically young sediments were compared to literature data from older sediments, and this comparison showed that age and type of geological formation might...

Labilibaculum manganireducens gen. nov., sp. nov. and Labilibaculum filiforme sp. nov., Novel Bacteroidetes Isolated from Subsurface Sediments of the Baltic Sea

Directory of Open Access Journals (Sweden)

Verona Vandieken

2018-01-01

Full Text Available Microbial communities in deep subsurface sediments are challenged by the decrease in amount and quality of organic substrates with depth. In sediments of the Baltic Sea, they might additionally have to cope with an increase in salinity from ions that have diffused downward from the overlying water during the last 9000 years. Here, we report the isolation and characterization of four novel bacteria of the Bacteroidetes from depths of 14–52 m below seafloor (mbsf of Baltic Sea sediments sampled during International Ocean Discovery Program (IODP Expedition 347. Based on physiological, chemotaxonomic and genotypic characterization, we propose that the four strains represent two new species within a new genus in the family Marinifilaceae, with the proposed names Labilibaculum manganireducens gen. nov., sp. nov. (type strain 59.10-2MT and Labilibaculum filiforme sp. nov. (type strains 59.16BT with additional strains of this species (59.10-1M and 60.6M. The draft genomes of the two type strains had sizes of 5.2 and 5.3 Mb and reflected the major physiological capabilities. The strains showed gliding motility, were psychrotolerant, neutrophilic and halotolerant. Growth by fermentation of mono- and disaccharides as well as pyruvate, lactate and glycerol was observed. During glucose fermentation, small amounts of electron equivalents were transferred to Fe(III by all strains, while one of the strains also reduced Mn(IV. Thereby, the four strains broaden the phylogenetic range of prokaryotes known to reduce metals to the group of Bacteroidetes. Halotolerance and metal reduction might both be beneficial for survival in deep subsurface sediments of the Baltic Sea.

Microbial community responses to organophosphate substrate additions in contaminated subsurface sediments.

Directory of Open Access Journals (Sweden)

Robert J Martinez

Full Text Available BACKGROUND: Radionuclide- and heavy metal-contaminated subsurface sediments remain a legacy of Cold War nuclear weapons research and recent nuclear power plant failures. Within such contaminated sediments, remediation activities are necessary to mitigate groundwater contamination. A promising approach makes use of extant microbial communities capable of hydrolyzing organophosphate substrates to promote mineralization of soluble contaminants within deep subsurface environments. METHODOLOGY/PRINCIPAL FINDINGS: Uranium-contaminated sediments from the U.S. Department of Energy Oak Ridge Field Research Center (ORFRC Area 2 site were used in slurry experiments to identify microbial communities involved in hydrolysis of 10 mM organophosphate amendments [i.e., glycerol-2-phosphate (G2P or glycerol-3-phosphate (G3P] in synthetic groundwater at pH 5.5 and pH 6.8. Following 36 day (G2P and 20 day (G3P amended treatments, maximum phosphate (PO4(3- concentrations of 4.8 mM and 8.9 mM were measured, respectively. Use of the PhyloChip 16S rRNA microarray identified 2,120 archaeal and bacterial taxa representing 46 phyla, 66 classes, 110 orders, and 186 families among all treatments. Measures of archaeal and bacterial richness were lowest under G2P (pH 5.5 treatments and greatest with G3P (pH 6.8 treatments. Members of the phyla Crenarchaeota, Euryarchaeota, Bacteroidetes, and Proteobacteria demonstrated the greatest enrichment in response to organophosphate amendments and the OTUs that increased in relative abundance by 2-fold or greater accounted for 9%-50% and 3%-17% of total detected Archaea and Bacteria, respectively. CONCLUSIONS/SIGNIFICANCE: This work provided a characterization of the distinct ORFRC subsurface microbial communities that contributed to increased concentrations of extracellular phosphate via hydrolysis of organophosphate substrate amendments. Within subsurface environments that are not ideal for reductive precipitation of uranium

Alteration in Solid State Phosphorous With Depth in Sediments Along the Salinity Transition Zone of a Major Chesapeake Bay Tributary

Science.gov (United States)

Hartzell, J. L.; Jordan, T. E.

2006-05-01

Determining the fate of particulate phosphorus in estuaries is essential for addressing the widespread problem of estuarine eutrophication, and is key to understanding P cycling and developing accurate global P budgets. Prominent reservoirs of P in surficial sediments include particulate P associated with iron or organic C. However, the importance of these reservoirs changes with the decomposition of organic matter and the reduction of iron. Also, the importance of iron bound P may decrease with increasing salinity due to the formation of iron sulfides. To investigate estuarine P burial and its relationship to salinity, we collected sediment cores of one-meter depth along the salinity gradient of the Patuxent River estuary (Maryland, USA), a major tributary of Chesapeake Bay. The sediments were analyzed using a sequential sedimentary extraction procedure that quantifies five separate reservoirs of particulate P. Total phosphorus concentrations in freshwater sediments were significantly higher than those in more saline sediments at all depths. Conversely, porewater phosphate concentrations were significantly lower in freshwater sediments than in the more saline sediments. Total P in the saline sediment cores decreased with depth, correlating to a reduction in iron-bound P. However, we did not find a concurrent increase in authigenic apatite with depth. Our findings indicate that mechanisms controlling changes in P sorption to sediments change profoundly with salinity and may contribute to increased bioavailability of phosphates with increasing salinity.

Organic matter accumulation and degradation in subsurface coastal sediments: a model-based comparison of rapid sedimentation and aquifer transport

Directory of Open Access Journals (Sweden)

J. M. Holstein

2010-11-01

Full Text Available The redox succession in shallow marine sediments generally exhibits a predictable pattern. Pore water profiles from a back barrier tidal flat in the German Wadden Sea depart from the expected redox zoning. Instead, a sulfate minimum zone associated with a sulfate-methane-sulfate double interface and a distinct ammonium peak at 1.5 m below sea floor (mbsf is displayed. Such evidence for significant degradation of organic matter (OM in subsurface layers is challenging our understanding of tidal flat biogeochemistry as little is known about processes that relocate reactive OM into layers far distant from the sediment-water interface. The objectives of our model study were to identify possible mechanisms for the rapid transport of organic matter to subsurface layers that cause the reversed redox succession and to constrain several important biogeochemical control parameters. We compared two scenarios for OM transfer: rapid sedimentation and burial of OM as well as lateral advection of suspended POM. Using a diagenetic model, uncertain process parameters, in particular those connected to OM degradation and (vertical or lateral transport, are systematically calibrated using field data.

We found that both scenarios, advection and sedimentation, had solutions consistent with the observed pore water profiles. For this specific site, however, advective transport of particulate material had to be rejected since the reconstructed boundary conditions were rather improbable. In the alternative deposition set-up, model simulations suggested the deposition of the source OM about 60 yrs before cores were taken. A mean sedimentation rate of approximately 2 cm yr⁻¹ indicates substantial changes in near coast tidal flat morphology, since sea level rise is at a much lower pace. High sedimentation rates most probably reflect the progradation of flats within the study area. These or similar morphodynamic features also occur in other coastal areas

Marine Subsurface Microbial Communities Across a Hydrothermal Gradient in Okinawa Trough Sediments

Science.gov (United States)

Brandt, L. D.; Hser Wah Saw, J.; Ettema, T.; House, C. H.

2015-12-01

IODP Expedition 331 to the Okinawa backarc basin provided an opportunity to study the microbial stratigraphy within the sediments surrounding a hydrothermal vent. The Okinawa backarc basin is a sedimented region of the seafloor located on a continental margin, and also hosts a hydrothermal network within the subsurface. Site C0014 within the Iheya North hydrothermal field is located 450 m east of the active vent and has a surface temperature of 5°C with no evidence of hydrothermal alteration within the top 10 meters below sea floor (mbsf). Temperature increases with depth at an estimated rate of 3°C/m and transitions from non-hydrothermal margin sediments to a hydrothermally altered regime below 10 mbsf. In this study, we utilized deep 16S rRNA sequencing of DNA from IODP Expedition 331 Site C0014 sediment horizons in order to assess diversity throughout the sediment column as well as determine the potential limits of the biosphere. Analysis of the amplicon data shows a shift over 15 mbsf from a heterogeneous community of cosmopolitan marine subsurface taxa toward an archaeal-dominated community in the deepest horizons of the predicted biosphere. Notably, the phylum Chloroflexi represents a substantial taxon through most horizons, where it appears to be replaced below 10 mbsf by punctuations of thermophilic and methanotrophic Archaea and Miscellaneous Crenarchaeotic Group abundances. DNA from the aforementioned transition horizons was further analyzed using metagenomic sequencing. Preliminary taxonomic analysis of the metagenomic data agrees well with amplicon data in capturing the shift in relative abundance of Archaea increasing with depth. Additionally, reverse gyrase, a gene found exclusively in hyperthermophilic microorganisms, was recovered only in the metagenome of the deepest horizon. A BLAST search of this protein sequence against the GenBank non-redudnant protein database produced top hits with reverse gyrase from Thermococcus and Pyrococcus, which are

Sediment mixing and accumulation rate effects on radionuclide depth profiles in Hudson estuary sediments

International Nuclear Information System (INIS)

Olsen, C.R.; Simpson, H.J.; Peng, T.; Bopp, R.F.; Trier, R.M.

1981-01-01

Measured anthropogenic radionuclide profiles in sediment cores from the Hudson River estuary were compared with profiles computed by using known input histories of radionuclides to the estuary and mixing coefficients which decreased exponentially with depth in the sediment. Observed 134 Cs sediment depth profiles were used in the mixing rate computation because reactor releases were the only significant source for this nuclide, whereas the inputs of 137 Cs and /sup 239.240/Pu to the estuary were complicated by runoff or erosion in upstream areas, in addition to direct fallout from precipitation. Our estimates for the rates of surface sediment mixing in the low salinity reach of the estuary range from 0.25 to 1 cm 2 /yr, or less. In some areas of the harbor adjacent to New York City, were fine-particle accumulation rates are generally >3 cm/yr, and often as high as 10 to 20 cm/yr, sediment mixing rates as high as 10 cm 2 /yr would have little effect on radionuclide peak distributions. Consequently, anthropogenic radionuclide maximum activities in subsurface sediments of the Hudson appear to be useful as time-stratigraphic reference levels, which can be correlated with periods of maximum radionuclide inputs for estimating rates and patterns of sediment accumulation

Autecology of crenarchaeotal and bacterial clades in marine sediments and microbial mats

OpenAIRE

Kubo, Kyoko

2011-01-01

The focus of this thesis was the autecology of the Miscellaneous Crenarchaeotal Group (MCG), a phylum-level clade of Archaea occurring mostly in marine sediments. Sequences of MCG 16S rRNA genes have been retrieved from a wide range of marine and terrestrial habitats, such as deep subsurface sediments, hydrothermal sediments, mud volcanoes, estuaries, hot springs and freshwater lake sediments. MCG members seem to have no general preferences for a particular temperature or salinity. So far, no...

Variations of marine pore water salinity and chlorinity in Gulf of Alaska sediments (IODP Expedition 341)

Science.gov (United States)

März, Christian; Mix, Alan C.; McClymont, Erin; Nakamura, Atsunori; Berbel, Glaucia; Gulick, Sean; Jaeger, John; Schneider (LeVay), Leah

2014-05-01

Pore waters of marine sediments usually have salinities and chlorinities similar to the overlying sea water, ranging around 34-35 psu (Practical Salinity Units) and around 550 mM Cl-, respectively. This is because these parameters are conservative in the sense that they do not significantly participate in biogeochemical cycles. However, pore water studies carried out in the frame of the International Ocean Discovery Program (IODP) and its predecessors have shown that salinities and chlorinities of marine pore waters can substantially deviate from the modern bottom water composition in a number of environmental settings, and various processes have been suggested to explain these phenomena. Also during the recent IODP Expedition 341 that drilled five sites in the Gulf of Alaska (Northeast Pacific Ocean) from the deep Surveyor Fan across the continental slope to the glaciomarine shelf deposits, several occurrences of pore waters with salinities and chlorinities significantly different from respective bottom waters were encountered during shipboard analyses. At the pelagic Sites U1417 and U1418 (~4,200 and ~3,700 m water depth, respectively), salinity and chlorinity maxima occur around 20-50 m sediment depth, but values gradually decrease with increasing drilling depths (down to 30 psu in ~600 m sediment depth). While the pore water freshening at depth is most likely an effect of clay mineral dehydration due to increasing burial depth, the shallow salinity and chlorinity maxima are interpreted as relicts of more saline bottom waters that existed in the North Pacific during the Last Glacial Maximum (Adkins et al., 2002). In contrast, the glaciomarine slope and shelf deposits at Site U1419 to U1421 (~200 to 1,000 m water depth) are characterised by unexpectedly low salinitiy and chlorinity values (as low as 16 psu and 295 mM Cl-, respectively) already in very shallow sediment depths (~10 m), and their records do not show systematic trends with sediment depth. Freshening

Development of sub-surface drainage data base system for use in water logging and salinity managements issues

International Nuclear Information System (INIS)

Azhar, A.H.; Alam, M.M; Rafiq, M.

2005-01-01

A simple user-friendly menu-driven database management system pertinent to the Impact of Subsurface Drainage Systems on land and Water Conditions (ISLaW) has been developed for use in water logging and salinity management issues of drainage areas. This database has been developed by integrating four software viz; Microsoft Excel, MS Word, Acrobat and MS Access. The information in the form of tables and figures with respect to various drainage projects has been presented in MS Word files. The major data sets of various subsurface drainage projects included in the ISLaW database are: i) technical aspects, ii) groundwater and soil salinity aspects, iii) socio-technical aspects, iv) agro-economic aspects, and v) operation and maintenance aspects. The various ISLaW files can be accessed just by clicking at the Menu buttons of the database system. This database not only gives feedback on the functioning of different subsurface drainage projects with respect to above mentioned various aspects, but also serves as a resource document for these data for future studies at other drainage projects. The developed database system is useful for planners, designers and Farmers' Organizations for improved operation of existing as well as development of future drainage projects. (author)

Effect of salinity on metal mobility in Sečovlje salina sediment (northern Adriatic, Slovenia)

Science.gov (United States)

Kovač, N.; Ramšak, T.; Glavaš, N.; Dolenec, M.; Rogan Šmuc, N.

2016-12-01

Saline sediment (saline healing mud or "fango") from the Sečovlje Salina (northern Adriatic, Slovenia) is traditionally used in the coastal health resorts as a virgin material for medical treatment, wellness and relax purposes. Therapeutic qualities of the healing mud depend on its mineralogical composition and physical, mineralogical, geochemical and biological properties. Their microbial and potentially toxic elements contamination are the most important features affecting user safety. However, the degree of metal toxicity (and its regulation) for natural healing mud is still under discussion. Therefore, the influence of the overlying water salinity on the mobility of heavy metals (and some other geochemical characteristic) was studied for saline sediments of the Sečovlje Salina. Experiments takes place in tanks under defined conditions i.e. at day (21 °C): night (16 °C) cycle for three months. Sediment was covered with water of different salinities (36, 155, 323 g NaCl L-1 and distillate water) and mixed/stirred every week during the experimental period. At the same time, the evaporated water was replaced with distilled water. The mud samples were analyzed, at the beginning and at the end of experiment, for mineral (XRD), elemental composition (ICP-MS) and organic content (% TOC, % TN). Geochemical analysis of the aqueous phase (content of cations and anions) have also been carried out in an accredited Canadian laboratory Actlabs (Activation Laboratories, Canada). Salinity and maturation of sediment does not significantly affect its mineral composition. The samples taken at the end of the experiment have higher percent of water but lower organic carbon concentration. Concentrations of investigated elements are comparable to that in surface sediments from Central Adriatic Sea. In the water phase, concentrations of most elements (As, Ba, Cu, Mo, Mn, Ni, Sr, Sb) rise from the beginning to the end of the experiment, whereas the metal (potentially toxic elements

Great differences in the critical erosion threshold between surface and subsurface sediments: A field investigation of an intertidal mudflat, Jiangsu, China

Science.gov (United States)

Shi, Benwei; Wang, Ya Ping; Wang, Li Hua; Li, Peng; Gao, Jianhua; Xing, Fei; Chen, Jing Dong

2018-06-01

Understanding of bottom sediment erodibility is necessary for the sustainable management and protection of coastlines, and is of great importance for numerical models of sediment dynamics and transport. To investigate the dependence of sediment erodibility on degree of consolidation, we measured turbidity, waves, tidal currents, intratidal bed-level changes, and sediment properties on an exposed macrotidal mudflat during a series of tidal cycles. We estimated the water content of surface sediments (in the uppermost 2 cm of sediment) and sub-surface sediments (at 2 cm below the sediment surface). Bed shear stress values due to currents (τc), waves (τw), and combined current-wave action (τcw) were calculated using a hydrodynamic model. In this study, we estimate the critical shear stress for erosion using two approaches and both of them give similar results. We found that the critical shear stress for erosion (τce) was 0.17-0.18 N/m2 in the uppermost 0-2 cm of sediment and 0.29 N/m2 in sub-surface sediment layers (depth, 2 cm), as determined by time series of τcw values and intratidal bed-level changes, and values of τce, obtained using the water content of bottom sediments, were 0.16 N/m2 in the uppermost 2 cm and 0.28 N/m2 in the sub-surface (depth, 2 cm) sediment. These results indicate that the value of τce for sub-surface sediments (depth, 2 cm) is much greater than that for the uppermost sediments (depth, 0-2 cm), and that the τce value is mainly related to the water content, which is determined by the extent of consolidation. Our results have implications for improving the predictive accuracy of models of sediment transport and morphological evolution, by introducing variable τce values for corresponding sediment layers, and can also provide a mechanistic understanding of bottom sediment erodibility at different sediment depths on intertidal mudflats, as related to differences in the consolidation time.

Salinity maxima associated with some sub-surface water masses in the upper layers of the Bay of Bengal

Digital Repository Service at National Institute of Oceanography (India)

Varadachari, V.V.R.; Murty, C.S.; Reddy, C.V.G.

The distribution of some sub-surface water masses in the western bay of Bengal during the south-west monsoon period is presented. Based on the salinity maxima and sigma t values the existence of waters of Persian Gulf and Red Sea origin could...

Geochemical and mineralogical investigation of uranium in multi-element contaminated, organic-rich subsurface sediment

International Nuclear Information System (INIS)

Qafoku, Nikolla P.; Gartman, Brandy N.; Kukkadapu, Ravi K.; Arey, Bruce W.; Williams, Kenneth H.; Mouser, Paula J.; Heald, Steve M.; Bargar, John R.; Janot, Noémie; Yabusaki, Steve; Long, Philip E.

2014-01-01

Highlights: • Subsurface naturally reduced zones (NRZ) contain U and other potential co-contaminants. • The NRZ has a remarkable assortment of chemically complex, potential U hosts. • Micron-scale, multi-contaminant areas were discovered in NRZ. • U(IV) occurs as biogenic UO 2 (82%), or biomass – bound monomeric U(IV) (18%). • NRZs may exhibit contaminant sink-source complex behavior. - Abstract: Subsurface regions of alluvial sediments characterized by an abundance of refractory or lignitic organic carbon compounds and reduced Fe and S bearing minerals, which are referred to as naturally reduced zones (NRZ), are present at the Integrated Field Research Challenge site in Rifle, CO (a former U mill site), and other contaminated subsurface sites. A study was conducted to demonstrate that the NRZ contains a variety of contaminants and unique minerals and potential contaminant hosts, investigate micron-scale spatial association of U with other co-contaminants, and determine solid phase-bounded U valence state and phase identity. The NRZ sediment had significant solid phase concentrations of U and other co-contaminants suggesting competing sorption reactions and complex temporal variations in dissolved contaminant concentrations in response to transient redox conditions, compared to single contaminant systems. The NRZ sediment had a remarkable assortment of potential contaminant hosts, such as Fe oxides, siderite, Fe(II) bearing clays, rare solids such as ZnS framboids and CuSe, and, potentially, chemically complex sulfides. Micron-scale inspections of the solid phase showed that U was spatially associated with other co-contaminants. High concentration, multi-contaminant, micron size (ca. 5–30 μm) areas of mainly U(IV) (53–100%) which occurred as biogenic UO 2 (82%), or biomass – bound monomeric U(IV) (18%), were discovered within the sediment matrix confirming that biotically induced reduction and subsequent sequestration of contaminant U(VI) via

Mangrove sedimentation and response to relative sea-level rise

Science.gov (United States)

Woodroffe, CD; Rogers, K.; Mckee, Karen L.; Lovelock, CE; Mendelssohn, IA; Saintilan, N.

2016-01-01

Mangroves occur on upper intertidal shorelines in the tropics and subtropics. Complex hydrodynamic and salinity conditions influence mangrove distributions, primarily related to elevation and hydroperiod; this review considers how these adjust through time. Accumulation rates of allochthonous and autochthonous sediment, both inorganic and organic, vary between and within different settings. Abundant terrigenous sediment can form dynamic mudbanks; tides redistribute sediment, contrasting with mangrove peat in sediment-starved carbonate settings. Sediments underlying mangroves sequester carbon, but also contain paleoenvironmental records of adjustments to past sea-level changes. Radiometric dating indicates long-term sedimentation, whereas Surface Elevation Table-Marker Horizon measurements (SET-MH) provide shorter perspectives, indicating shallow subsurface processes of root growth and substrate autocompaction. Many tropical deltas also experience deep subsidence, which augments relative sea-level rise. The persistence of mangroves implies an ability to cope with moderately high rates of relative sea-level rise. However, many human pressures threaten mangroves, resulting in continuing decline in their extent throughout the tropics.

Mangrove Sedimentation and Response to Relative Sea-Level Rise.

Science.gov (United States)

Woodroffe, C D; Rogers, K; McKee, K L; Lovelock, C E; Mendelssohn, I A; Saintilan, N

2016-01-01

Mangroves occur on upper intertidal shorelines in the tropics and subtropics. Complex hydrodynamic and salinity conditions, related primarily to elevation and hydroperiod, influence mangrove distributions; this review considers how these distributions change over time. Accumulation rates of allochthonous and autochthonous sediment, both inorganic and organic, vary between and within different settings. Abundant terrigenous sediment can form dynamic mudbanks, and tides redistribute sediment, contrasting with mangrove peat in sediment-starved carbonate settings. Sediments underlying mangroves sequester carbon but also contain paleoenvironmental records of adjustments to past sea-level changes. Radiometric dating indicates long-term sedimentation, whereas measurements made using surface elevation tables and marker horizons provide shorter perspectives, indicating shallow subsurface processes of root growth and substrate autocompaction. Many tropical deltas also experience deep subsidence, which augments relative sea-level rise. The persistence of mangroves implies an ability to cope with moderately high rates of relative sea-level rise. However, many human pressures threaten mangroves, resulting in a continuing decline in their extent throughout the tropics.

Three-dimensional simulation of flow, salinity, sediment, and radionuclide movements in the Hudson River estuary

International Nuclear Information System (INIS)

Onishi, Y.; Trent, D.S.

1985-04-01

The three-dimensional, finite difference model, FLESCOT simulates time-varying movements of flow, turbulent kinetic energy, salinity, water temperature, sediment, and contaminants in estuarine, coastal, and ocean waters. The model was applied to a 106-km (66-mi) reach of the Hudson River estuary in New York between Chelsea and the mouth of the river. It predicted the time-varying, three-dimensional distributions of tidal flow, salinity, three separate groups of sediments (i.e., sand, silt, and clay), and a radionuclide ( 137 Cs) in both dissolved and particulate (those sorbed by sediments) forms for over 40 days. The model also calculated riverbed elevation changes caused by sediment deposition and bed erosion, bed sediment size distribution and armoring, and distributions of the particulate 137 Cs sorbed by sand, silt, and clay in the bed

Use of Moessbauer spectroscopy to determine the effect of salinity on the speciation of triorganotins in Anacostia River sediments

Energy Technology Data Exchange (ETDEWEB)

Eng, George; Song Xueqing [University of the District of Columbia, Department of Chemistry and Physics and Agricultural Experimental Station (United States); May, Leopold, E-mail: may@cua.edu [Catholic University of America, Department of Chemistry (United States)

2006-06-15

The speciation of several tributyltin and triphenyltin compounds under varying salinity conditions (0, 20, 40 and 60%) was studied by Moessbauer spectroscopy in both anaerobic and aerobic Anacostia River sediments. The Moessbauer spectral parameters of the spiked sediments indicated that changes in the salinity did not affect the speciation of the tin compounds in either aerobic or anaerobic sediments.

Concentrations of inorganic arsenic in groundwater, agricultural soils and subsurface sediments from the middle Gangetic plain of Bihar, India.

Science.gov (United States)

Kumar, Manoj; Ramanathan, A L; Rahman, Mohammad Mahmudur; Naidu, Ravi

2016-12-15

Concentrations of inorganic forms [arsenite, As(III) and arsenate, As(V) of arsenic (As) present in groundwater, agricultural soils and subsurface sediments located in the middle Gangetic plain of Bihar, India were determined. Approximately 73% of the groundwater samples (n=19) show As(III) as the dominant species while 27% reveals As(V) was the dominant species. The concentration of As(III) in agricultural soil samples varies from not detectable to 40μg/kg and As(V) was observed as the major species (ranging from 1050 to 6835μg/kg) while the total As concentration varied from 3528 to 14,690μg/kg. Total extracted concentration of As was higher in the subsurface sediments (range 9119-20,056μg/kg in Methrapur and 4788-19,681μg/kg in Harail Chapar) than the agricultural soil, indicating the subsurface sediment as a source of As. Results of X-ray diffraction (XRD) and environmental scanning electron microscope (ESEM) revealed the presence of hematite and goethite throughout the vertical section below while magnetite was observed only in the upper oxidized layer at Methrapur and Harail Chapar. Alteration of Fe-oxides and presence of fibrous goethite indicating presence of diagenetic sediment. Siderite plays a crucial role as sinks to the As in subsurface sediments. The study also concluded that decomposition of organic matter present in dark and grey sections promote the redox conditions and trigger mobilization of As into groundwater. Copyright © 2016 Elsevier B.V. All rights reserved.

Chemical quality of surface waters and sedimentation in the Saline River basin, Kansas

Science.gov (United States)

Jordan, Paul Robert; Jones, B.F.; Petri, Lester R.

1964-01-01

This report gives the results of an investigation of the sediment and dissolved minerals that are transported by the Saline River and its tributaries. The Saline River basin is in western and central Kansas; it is long and narrow and covers 3,420 square miles of rolling plains, which is broken in some places by escarpments and small areas of badlands. In the western part the uppermost bedrock consists predominantly of calcareous elastic sedimentary rocks of continental origin of Pliocene age and in most places is covered by eolian deposits of Pleistocene and Recent age. In the central part the ex posed bedrock consists predominantly of calcareous marine sedimentary rocks of Late Cretaceous age. In the eastern part the exposed bedrock consists mainly of noncalcareous continental and littoral elastic sedimentary rocks of Early Cretaceous and Permian age. Fluvial deposits are in the valleys, and eolian materials are present over much of the uplands. Average precipitation increases rather uniformly from about 18 inches per year in the west to almost 28 inches per year in the east. Runoff is not affected by irrigation nor regulated by large structures, but it is closely related to precipitation. Average runoff increases from less than 0.2 inch per year in the west to more than 1.5 inches per year in the east. Aquifers of the flood-plain and terrace deposits and of the Cretaceous Dakota Sandstone are the major sources of ground-water accretion to the streams. In the upper reaches of the Saline River, the water is only slightly mineralized; during the period of record the specific conductance near Wakeeney never exceeded 750 micromhos per centimeter. In the lower reaches, however, the water is slightly mineralized during periods of high flow and is highly mineralized during periods of low flow; the specific conductance near Russell exceeded 1,500 micromhos per centimeter more than 80 percent of the time. Near Russell, near Wilson, and at Tescott the water is of the

Organic carbon source and salinity shape sediment bacterial composition in two China marginal seas and their major tributaries.

Science.gov (United States)

Wang, Kai; Zou, Li; Lu, Xinxin; Mou, Xiaozhen

2018-08-15

Marginal sea sediments receive organic substrates of different origins, but whether and to what extent sediment microbial communities are reflective of the different sources of organic substrates remain unclear. To address these questions, sediment samples were collected in two connected China marginal seas, i.e., Bohai Sea and Yellow Sea, and their two major tributaries (Yellow River and Liao River). Sediment bacterial community composition (BCC) was examined using 16S rRNA gene pyrosequencing. In addition, physicochemical variables that describe environmental conditions and sediment features were measured. Our results revealed that BCCs changed with salinity and organic carbon (OC) content. Members of Gaiellaceae and Comamonadaceae showed a rapid decrease as salinity and phytoplankton-derived OC increased, while Piscirickettsiaceae and Desulfobulbaceae exhibited an opposite distribution pattern. Differences of riverine vs. marginal sea sediment BCCs could be mostly explained by salinity. However, within the marginal seas, sediment BCC variations were mainly explained by OC-related variables, including terrestrial-derived fatty acids (Terr_FA), phytoplankton-derived polyunsaturated fatty acids (Phyto_PUFA), stable carbon isotopes (δ 13 C), and carbon to nitrogen ratio (C/N). In addition to environmental variables, network analysis suggested that interactions among individual bacterial taxa might be important in shaping sediment BCCs in the studied areas. Copyright © 2018 Elsevier B.V. All rights reserved.

Active subsurface cellular function in the Baltic Sea Basin, IODP Exp 347

Science.gov (United States)

Reese, B. K.; Zinke, L. A.; Bird, J. T.; Lloyd, K. G.; Marshall, I.; Amend, J.; Jørgensen, B. B.

2016-12-01

The Baltic Sea Basin is a unique depositional setting that has experienced periods of glaciation and deglaciation as a result of global temperature fluctuations over the course of several hundred thousand years. This has resulted in laminated sediments formed during periods with strong permanent salinity stratification. The high sedimentation rates (100-500 cm/1000 y) make this an ideal setting to understand the microbial structure of a deep biosphere community in a high-organic matter environment. The responses of deep sediment microbial communities to variations in conditions during and after deposition are poorly understood. Samples were collected through scientific drilling during the International Ocean Discovery Program (IODP) Expedition 347 on board the Greatship Manisha, September-November 2013. We examined the active microbial community structure using the 16S rRNA gene transcript and active functional genes through metatranscriptome sequencing. Major biogeochemical shifts have been observed in response to the depositional history between the limnic, brackish, and marine phases. The microbial community structure in the BSB is diverse and reflective of the unique changes in the geochemical profile. These data further define the existence life in the deep subsurface and the survival mechanisms required for this extreme environment.

Quantification of Microbial Communities in Subsurface Marine Sediments of the Black Sea and off Namibia.

Science.gov (United States)

Schippers, Axel; Kock, Dagmar; Höft, Carmen; Köweker, Gerrit; Siegert, Michael

2012-01-01

Organic-rich subsurface marine sediments were taken by gravity coring up to a depth of 10 m below seafloor at six stations from the anoxic Black Sea and the Benguela upwelling system off Namibia during the research cruises Meteor 72-5 and 76-1, respectively. The quantitative microbial community composition at various sediment depths was analyzed using total cell counting, catalyzed reporter deposition - fluorescence in situ hybridization (CARD-FISH) and quantitative real-time PCR (Q-PCR). Total cell counts decreased with depths from 10(9) to 10(10) cells/mL at the sediment surface to 10(7)-10(9) cells/mL below one meter depth. Based on CARD-FISH and Q-PCR analyses overall similar proportions of Bacteria and Archaea were found. The down-core distribution of prokaryotic and eukaryotic small subunit ribosomal RNA genes (16S and 18S rRNA) as well as functional genes involved in different biogeochemical processes was quantified using Q-PCR. Crenarchaeota and the bacterial candidate division JS-1 as well as the classes Anaerolineae and Caldilineae of the phylum Chloroflexi were highly abundant. Less abundant but detectable in most of the samples were Eukarya as well as the metal and sulfate-reducing Geobacteraceae (only in the Benguela upwelling influenced sediments). The functional genes cbbL, encoding for the large subunit of RuBisCO, the genes dsrA and aprA, indicative of sulfate-reducers as well as the mcrA gene of methanogens were detected in the Benguela upwelling and Black Sea sediments. Overall, the high organic carbon content of the sediments goes along with high cell counts and high gene copy numbers, as well as an equal abundance of Bacteria and Archaea.

Microbial physiology-based model of ethanol metabolism in subsurface sediments

Science.gov (United States)

Jin, Qusheng; Roden, Eric E.

2011-07-01

A biogeochemical reaction model was developed based on microbial physiology to simulate ethanol metabolism and its influence on the chemistry of anoxic subsurface environments. The model accounts for potential microbial metabolisms that degrade ethanol, including those that oxidize ethanol directly or syntrophically by reducing different electron acceptors. Out of the potential metabolisms, those that are active in the environment can be inferred by fitting the model to experimental observations. This approach was applied to a batch sediment slurry experiment that examined ethanol metabolism in uranium-contaminated aquifer sediments from Area 2 at the U.S. Department of Energy Field Research Center in Oak Ridge, TN. According to the simulation results, complete ethanol oxidation by denitrification, incomplete ethanol oxidation by ferric iron reduction, ethanol fermentation to acetate and H 2, hydrogenotrophic sulfate reduction, and acetoclastic methanogenesis: all contributed significantly to the degradation of ethanol in the aquifer sediments. The assemblage of the active metabolisms provides a frame work to explore how ethanol amendment impacts the chemistry of the environment, including the occurrence and levels of uranium. The results can also be applied to explore how diverse microbial metabolisms impact the progress and efficacy of bioremediation strategies.

Isotopic identification of the source of methane in subsurface sediments of an area surrounded by waste disposal facilities

International Nuclear Information System (INIS)

Hackley, K.C.; Liu, C.L.; Trainor, D.

1999-01-01

The major source of methane (CH 4 ) in subsurface sediments on the property of a former hazardous waste treatment facility was determined using isotopic analyses measured on CH 4 and associated groundwater. The site, located on an earthen pier built into a shallow wetland lake, has had a history of waste disposal practices and is surrounded by landfills and other waste management facilities. Concentrations of CH 4 up to 70% were found in the headspace gases of several piezometers screened at 3 different depths (ranging from 8 to 17 m) in lacustrine and glacial till deposits. Possible sources of the CH 4 included a nearby landfill, organic wastes from previous impoundments and microbial gas derived from natural organic matter in the sediments.Isotopic analyses included δ 13 C, δD, 14 C, and 3 H on select CH 4 samples and δD and δ 18 O on groundwater samples. Methane from the deepest glacial till and intermediate lacustrine deposits had δ 13 C values from -79 to -82per thousand, typical of natural 'drift gas' generated by microbial CO 2 -reduction. The CH 4 from the shallow lacustrine deposits had δ 13 C values from -63 to -76per thousand, interpreted as a mixture between CH 4 generated by microbial fermentation and the CO 2 -reduction processes within the subsurface sediments. The δD values of all the CH 4 samples were quite negative ranging from -272 to -299per thousand. Groundwater sampled from the deeper zones also showed quite negative δD values that explained the light δD observed for the CH 4 . Radiocarbon analyses of the CH 4 showed decreasing 14 C activity with depth, from a high of 58 pMC in the shallow sediments to 2 pMC in the deeper glacial till. The isotopic data indicated the majority of CH 4 detected in the till deposits of this site was microbial CH 4 generated from naturally buried organic matter within the subsurface sediments. However, the isotopic data of CH 4 from the shallow piezometers was more variable and the possibility of some

Isotopic identification of the source of methane in subsurface sediments of an area surrounded by waste disposal facilities

Science.gov (United States)

Hackley, Keith C.; Liu, Chao-Li; Trainor, D.

1999-01-01

The major source of methane (CH4) in subsurface sediments on the property of a former hazardous waste treatment facility was determined using isotopic analyses measured on CH4 and associated groundwater. The site, located on an earthen pier built into a shallow wetland lake, has had a history of waste disposal practices and is surrounded by landfills and other waste management facilities. Concentrations of CH4 up to 70% were found in the headspace gases of several piezometers screened at 3 different depths (ranging from 8 to 17 m) in lacustrine and glacial till deposits. Possible sources of the CH4 included a nearby landfill, organic wastes from previous impoundments and microbial gas derived from natural organic matter in the sediments. Isotopic analyses included ??13C, ??D, 14C, and 3H on select CH4 samples and ??D and ??18O on groundwater samples. Methane from the deepest glacial till and intermediate lacustrine deposits had ??13C values from -79 to -82???, typical of natural 'drift gas' generated by microbial CO2-reduction. The CH4 from the shallow lacustrine deposits had ??13C values from -63 to -76???, interpreted as a mixture between CH4 generated by microbial fermentation and the CO2-reduction processes within the subsurface sediments. The ??D values of all the CH4 samples were quite negative ranging from -272 to -299???. Groundwater sampled from the deeper zones also showed quite negative ??D values that explained the light ??D observed for the CH4. Radiocarbon analyses of the CH4 showed decreasing 14C activity with depth, from a high of 58 pMC in the shallow sediments to 2 pMC in the deeper glacial till. The isotopic data indicated the majority of CH4 detected in the fill deposits of this site was microbial CH4 generated from naturally buried organic matter within the subsurface sediments. However, the isotopic data of CH4 from the shallow piezometers was more variable and the possibility of some mixing with oxidized landfill CH4 could not be completely

Quantification of microbial communities in subsurface marine sediments of the Black Sea and off Namibia

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Axel eSchippers

2012-01-01

Full Text Available Organic-rich subsurface marine sediments were taken by gravity coring up to a depth of 10 meters below seafloor at six stations from the anoxic Black Sea and the Benguela upwelling system off Namibia during the research cruises R/V Meteor 72/5 and 76/1, respectively. The quantitative microbial community composition at various sediment depths was analyzed using total cell counting, CARD-FISH and quantitative real-time PCR (Q-PCR. Total cell counts decreased with depths from 109 – 1010 cells /mL at the sediment surface to 107 – 109 cells /mL below one meter depth. Based on CARD-FISH and Q-PCR analysis overall similar proportions of Bacteria and Archaea were determined. The down core quantitative distribution of prokaryotic and eukaryotic small subunit ribosomal RNA genes as well as functional genes involved in different biogeochemical processes was successfully revealed by Q-PCR. Crenarchaeota and the bacterial candidate division JS-1 and the classes Anaerolineae and Caldilineae of the phylum Chloroflexi were as highly abundant as Archaea and Bacteria, respectively. Less abundant but detectable in most of the samples in high gene copy numbers were Eukarya and the Fe(III- and Mn(IV-reducing bacterial group Geobacteriaceae (off Namibia as well as the functional genes cbbL encoding for the large subunit of Rubisco, the functional genes dsrA and aprA of sulfate-reducers and the gene mcrA of methanogens. Overall the high organic carbon content of the sediments goes along with high cell counts and high gene copy numbers, as well as an equal abundance of Bacteria and Archaea.

Deep subsurface microbial processes

Science.gov (United States)

Lovley, D.R.; Chapelle, F.H.

1995-01-01

Information on the microbiology of the deep subsurface is necessary in order to understand the factors controlling the rate and extent of the microbially catalyzed redox reactions that influence the geophysical properties of these environments. Furthermore, there is an increasing threat that deep aquifers, an important drinking water resource, may be contaminated by man's activities, and there is a need to predict the extent to which microbial activity may remediate such contamination. Metabolically active microorganisms can be recovered from a diversity of deep subsurface environments. The available evidence suggests that these microorganisms are responsible for catalyzing the oxidation of organic matter coupled to a variety of electron acceptors just as microorganisms do in surface sediments, but at much slower rates. The technical difficulties in aseptically sampling deep subsurface sediments and the fact that microbial processes in laboratory incubations of deep subsurface material often do not mimic in situ processes frequently necessitate that microbial activity in the deep subsurface be inferred through nonmicrobiological analyses of ground water. These approaches include measurements of dissolved H2, which can predict the predominant microbially catalyzed redox reactions in aquifers, as well as geochemical and groundwater flow modeling, which can be used to estimate the rates of microbial processes. Microorganisms recovered from the deep subsurface have the potential to affect the fate of toxic organics and inorganic contaminants in groundwater. Microbial activity also greatly influences 1 the chemistry of many pristine groundwaters and contributes to such phenomena as porosity development in carbonate aquifers, accumulation of undesirably high concentrations of dissolved iron, and production of methane and hydrogen sulfide. Although the last decade has seen a dramatic increase in interest in deep subsurface microbiology, in comparison with the study of

Entrainment, transport and deposition of sediment by saline gravity currents

Science.gov (United States)

Zordan, Jessica; Juez, Carmelo; Schleiss, Anton J.; Franca, Mário J.

2018-05-01

Few studies have addressed simultaneously the feedback between the hydrodynamics of a gravity current and the geomorphological changes of a mobile bed. Hydrodynamic quantities such as turbulent and mean velocities, bed shear stress and turbulent stresses undoubtedly govern the processes of entrainment, transport and deposition. On the other hand, the incorporation of entrained sediment in the current may change its momentum by introducing extra internal stresses, introducing thus a feedback process. These two main questions are here investigated. Laboratory experiments of saline gravity currents, produced by lock-exchange, flowing over a mobile bed channel reach, are here reported. Different initial buoyancies of the current in the lock are tested together with three different grain sizes of the non-coherent sediment that form the erodible bed. Results from velocity measurements are combined with the visualization of the sediment movement in the mobile reach and with post-test topographic and photo surveys of the geomorphology modifications of the channel bed. Mean and turbulent velocities are measured and bed shear stress and Reynolds stresses are estimated. We show that the mean vertical component of the velocity and bed shear stress are highly correlated with the first instants of sediment entrainment. Vertical turbulent velocity is similarly related to entrainment, although with lower correlation values, contributing as well to the sediment movement. Bed shear stress and Reynolds shear stress measured near the bed are correlated with sediment entrainment for longer periods, indicating that these quantities are associated to distal transport as well. Geomorphological changes in the mobile bed are strongly related to the impulse caused by the bed shear stress on the sediment. On the other hand, we show that the nature of the grain of the mobile bed reach influences the hydrodynamics of the current which means that a feedback mechanisms between both occurs during

A New Sensitive GC-MS-based Method for Analysis of Dipicolinic Acid and Quantifying Bacterial Endospores in Deep Marine Subsurface Sediment

Science.gov (United States)

Fang, J.

2015-12-01

Marine sediments cover more than two-thirds of the Earth's surface and represent a major part of the deep biosphere. Microbial cells and microbial activity appear to be widespread in these sediments. Recently, we reported the isolation of gram-positive anaerobic spore-forming piezophilic bacteria and detection of bacterial endospores in marine subsurface sediment from the Shimokita coalbed, Japan. However, the modern molecular microbiological methods (e.g., DNA-based microbial detection techniques) cannot detect bacterial endospore, because endospores are impermeable and are not stained by fluorescence DNA dyes or by ribosomal RNA staining techniques such as catalysed reporter deposition fluorescence in situ hybridization. Thus, the total microbial cell abundance in the deep biosphere may has been globally underestimated. This emphasizes the need for a new cultivation independent approach for the quantification of bacterial endospores in the deep subsurface. Dipicolinic acid (DPA, pyridine-2,6-dicarboxylic acid) is a universal and specific component of bacterial endospores, representing 5-15wt% of the dry spore, and therefore is a useful indicator and quantifier of bacterial endospores and permits to estimate total spore numbers in the subsurface biosphere. We developed a sensitive analytical method to quantify DPA content in environmental samples using gas chromatography-mass spectrometry. The method is sensitive and more convenient in use than other traditional methods. We applied this method to analyzing sediment samples from the South China Sea (obtained from IODP Exp. 349) to determine the abundance of spore-forming bacteria in the deep marine subsurface sediment. Our results suggest that gram-positive, endospore-forming bacteria may be the "unseen majority" in the deep biosphere.

Spatial prediction of the variability of early pleistocene subsurface sediments in the Netherlands part 2: geochemistry

NARCIS (Netherlands)

Huisman, D.J.; Weijers, J.P.; Dijkshoorn, L.; Veldkamp, A.

2000-01-01

We started a geochemical mapping campaign in the Early Pleistocene fluviatile Kedichem Formation in the Netherlands in order to meet the demand for more information about subsurface sediment compositions. Geochemical data were collected during a sampling campaign, and about 600 samples from the

Spatial prediction of the variability of Early Pleistocene subsurface sediments in the Netherlands - Part 2 : Geochemistry

NARCIS (Netherlands)

Huisman, D.J.; Weijers, J.P.; Dijkshoorn, L.; Veldkamp, A.

2000-01-01

We started a geochemical mapping campaign in the Early Pleistocene fluviatile Kedichem Formation in the Netherlands in order to meet the demand for more information about subsurface sediment compositions. Geochemical data were collected during a sampling campaign, and about 600 samples from the

Rapid Sediment Accumulation Results in High Methane Effluxes from Coastal Sediments.

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Matthias Egger

Full Text Available Globally, the methane (CH4 efflux from the ocean to the atmosphere is small, despite high rates of CH4 production in continental shelf and slope environments. This low efflux results from the biological removal of CH4 through anaerobic oxidation with sulfate in marine sediments. In some settings, however, pore water CH4 is found throughout the sulfate-bearing zone, indicating an apparently inefficient oxidation barrier for CH4. Here we demonstrate that rapid sediment accumulation can explain this limited capacity for CH4 removal in coastal sediments. In a saline coastal reservoir (Lake Grevelingen, The Netherlands, we observed high diffusive CH4 effluxes from the sediment into the overlying water column (0.2-0.8 mol m-2 yr-1 during multiple years. Linear pore water CH4 profiles and the absence of an isotopic enrichment commonly associated with CH4 oxidation in a zone with high rates of sulfate reduction (50-170 nmol cm-3 d-1 both suggest that CH4 is bypassing the zone of sulfate reduction. We propose that the rapid sediment accumulation at this site (~ 13 cm yr-1 reduces the residence time of the CH4 oxidizing microorganisms in the sulfate/methane transition zone (< 5 years, thus making it difficult for these slow growing methanotrophic communities to build-up sufficient biomass to efficiently remove pore water CH4. In addition, our results indicate that the high input of organic matter (~ 91 mol C m-2 yr-1 allows for the co-occurrence of different dissimilatory respiration processes, such as (acetotrophic methanogenesis and sulfate reduction in the surface sediments by providing abundant substrate. We conclude that anthropogenic eutrophication and rapid sediment accumulation likely increase the release of CH4 from coastal sediments.

Biogeochemical Coupling of Fe and Tc Speciation in Subsurface Sediments: Implications to Long-Term Tc Immobilization

International Nuclear Information System (INIS)

Jim K. Fredrickson; C. I. Steefel; R. K. Kukkadapu; S. M. Heald

2006-01-01

The project has been focused on biochemical processes in subsurface sediments involving Fe that control the valence state, solubility, and effective mobility of 99Tc. Our goal has been to understand the Tc biogeochemistry as it may occur in suboxic and biostimulated subsurface environments. Two objectives have been pursued: (1) To determine the relative reaction rates of 99Tc(VII)O2(aq) with metal reducing bacteria and biogenic Fe(II); and to characterize the identity, structure, and molecular speciation of Tc(IV) products formed through reaction with both biotic and abiotic reductants. (2) To quantify the biogeochemical factors controlling the reaction rate of O2 with Tc(IV)O2?nH2O in sediment resulting from the direct enzymatic reduction of Tc(VII) by DIRB and/or the reaction of Tc(VII) with the various types of biogenic Fe(II) produced by DIRB

Combined electromagnetic geophysical mapping at Arctic perennial saline springs: Possible applications for the detection of water in the shallow subsurface of Mars

Science.gov (United States)

Samson, C.; Mah, J.; Haltigin, T.; Holladay, S.; Ralchenko, M.; Pollard, W.; Monteiro Santos, F. A.

2017-05-01

Perennial springs at the Gypsum Hill site on Axel Heiberg Island in the Canadian Arctic (79°24‧N, 90°44‧W) represent a high-fidelity analogue to hydrothermal systems that might exist on Mars. The springs were surveyed using an electromagnetic induction sounder (EMIS) and ground penetrating radar (GPR). Both instruments probed the subsurface to a depth of approximately 3 m. Lateral EMIS soundings were performed every metre along a 400 m long reconnaissance line roughly oriented SW-NE and extending through 23 active springs and 1 dry outlet to measure electrical conductivity. Two distinct zones were identified within the survey area on the basis of these data: in the southwest portion, sharp conductivity peaks correspond to isolated springs with well-defined outlets, flowing over dry rocky soil; in the northeast portion, the springs are fed by a pervasive network of saline fluids, resulting in high background readings and muddy surface conditions. These observations are consistent with vertical EMIS sounding data which showed that the brine body feeding the saline springs can be found closer to the ground surface towards the northeast portion of the survey site. In areas of high electrical conductivity, the GPR data exhibits strong scattering. The noisy areas are sharply defined and interpreted to correspond to narrow vertical conduits feeding individual spring outlets. The EMIS is a rugged instrument that could be included as payload in future rover-based Mars exploration missions aiming at probing the shallow subsurface for the presence of brine pockets.

Macro and Microelements Drive Diversity and Composition of Prokaryotic and Fungal Communities in Hypersaline Sediments and Saline-Alkaline Soils.

Science.gov (United States)

Liu, Kaihui; Ding, Xiaowei; Tang, Xiaofei; Wang, Jianjun; Li, Wenjun; Yan, Qingyun; Liu, Zhenghua

2018-01-01

Understanding the effects of environmental factors on microbial communities is critical for microbial ecology, but it remains challenging. In this study, we examined the diversity (alpha diversity) and community compositions (beta diversity) of prokaryotes and fungi in hypersaline sediments and salinized soils from northern China. Environmental variables were highly correlated, but they differed significantly between the sediments and saline soils. The compositions of prokaryotic and fungal communities in the hypersaline sediments were different from those in adjacent saline-alkaline soils, indicating a habitat-specific microbial distribution pattern. The macroelements (S, P, K, Mg, and Fe) and Ca were, respectively, correlated closely with the alpha diversity of prokaryotes and fungi, while the macronutrients (e.g., Na, S, P, and Ca) were correlated with the prokaryotic and fungal beta-diversity ( P ≤ 0.05). And, the nine microelements (e.g., Al, Ba, Co, Hg, and Mn) and micronutrients (Ba, Cd, and Sr) individually shaped the alpha diversity of prokaryotes and fungi, while the six microelements (e.g., As, Ba, Cr, and Ge) and only the trace elements (Cr and Cu), respectively, influenced the beta diversity of prokaryotes and fungi ( P analysis (VPA) showed that environmental variables jointly explained 55.49% and 32.27% of the total variation for the prokaryotic and fungal communities, respectively. Together, our findings demonstrate that the diversity and community composition of the prokaryotes and fungi were driven by different macro and microelements in saline habitats, and that geochemical elements could more widely regulate the diversity and community composition of prokaryotes than these of fungi.

Fossilized intact polar lipids of photosynthetic organisms in ancient subsurface sediments

Science.gov (United States)

Bauersachs, T.; Schouten, S.; Hopmans, E. C.; Sinninghe Damsté, J. S.

2009-12-01

In recent years, the idea of a rich microbial biosphere in the marine sea floor has been widely accepted. This so-called “deep biosphere” is estimated to contain ca. 50 % of Earth’s total prokaryotic biomass with the overall order of magnitude of microbial cells in the sea floor being the same as the biomass of all surface plant life (Whitman et al. 1998). Evidence for the existence of a deep biosphere comes, among others, from the analysis of intact polar lipids (IPLs). This approach presumes that IPLs almost instantaneously lose their polar head group after cell death and thus do not preserve on geological timescales. Consequently, IPLs in the subsurface should derive from in situ production and hence indicate the presence of living prokaryotic cells. For example, in various oceanic subsurface sediments archaeal IPLs have been found, suggesting that Archaea constitute a major fraction of the deep biosphere biomass (Lipp et al. 2008). In this study, we found IPLs of heterocystous cyanobacteria in a number of ancient and deeply buried sediments. Heterocystous cyanobacteria are strictly photoautotrophic organisms that are a common constituent of the phytoplankton community in many freshwater and brackish environments but are also encountered in the marine realm as endosymbionts of diatom species. Under nitrogen-depleted conditions, these organisms carry out nitrogen fixation in specialized cells, known as heterocysts. These cells contain a suite of heterocyst glycolipids (HGs) that have not been identified in any other organism and are thus unique biological markers for nitrogen-fixing heterocystous cyanobacteria. Using high performance liquid chromatography coupled to electrospray ionisation tandem mass spectrometry (HPLC/ESI-MS/MS), we detected HGs in Pleistocene and Pliocene Mediterranean sapropels buried up to 60 m below the seafloor. In addition, these HGs were also found in lacustrine deposits of the Oligocene Lake Enspel (35 Ma), the Eocene Lake Messel

Spectroscopic studies of humic acids from subsurface sediment samples collected across the Aegean Sea

Directory of Open Access Journals (Sweden)

F. SAKELLARIADOU

2006-12-01

Full Text Available Natural humic acids are biogenic, structurally complex and heterogeneous, refractory, acidic, yellow-to black-coloured organic polyelectrolytes of relatively high molecular weight. They occur in all soils, sediments, fresh waters, and seawaters. Humic acids represent the largest portion of nonliving soil organic matter. In the present paper, humic substances were isolated from marine subsurface sediment samples collected across the Aegean sea (in Greece and especially from a marine area extending northwards of the Samothraki plateau towards the north-eastern part of the island of Crete. In a following step, humic preparations were studied using infrared and fluorescence spectroscopy (emission, excitation and synchronous-scan excitation spectra were obtained. The infrared spectra suggested functional chemical groups such as as OH-, C-H aliphatic, C=C, C=O/COO-, salts of carboxylic acids, and also, in some cases, silicate anions or C-O from alcohols, esters and ethers. Fluorescence emission, excitation and synchronous scan excitation provided some valuable information concerning a probable origin (marine and/or terrestrial for the isolated humics.

Near-bed observations of high-concentration sediment transport in the Changjiang Estuary

Science.gov (United States)

Zhou, Z.; Ge, J.; Ding, P.

2017-12-01

The North Passage, the core of turbidity maximum in the Changjiang Estuary, is now under the strong sedimentation due to the abundant sediment supply from the upstream Changjiang River and the river-tide interacted dynamics. Recent studies suggested that strong siltation could be attributed to bottom high-concentration sediment transport, which however is very difficult to be detected and observed by vessel-anchored survey methods. To better understand the mechanisms of sediment transport and deposition in the channel region of the North Passage and its adjacent areas, we conducted continuous field observations which covered spring and neap tide period in the wintertime of 2016, the summertime of 2015 and 2017, focusing on near-bottom sediment transport. Tripods mounted with multiple instruments, including up-looking and down-looking Acoustic Doppler Current Profilers(ADCP), Vector Current Meter(ADV), Optical Backscatter Sensor(OBS), ASM, ALEC and RBR were used to observe the near-bottom physical process and its induced sediment dynamics. Results of these observations clearly described the current-wave-sediment interaction, which produced different patterns of bottom mud suspension at different tripods. Both hydrodynamic features and suspended sediment showed variations between spring and neap tide. Taking data of 2016 as an example, averaged suspended sediment concentration(SSC) at two tripods was 1.52 g/L and 2.13 g/L during the neap tide, 4.51 g/L and 5.75 g/L with the peak value reaching 25 g/L during the spring tide. At the tripod which was closer to the channel region, three peaks of SSC during the spring tide occurred near the flood slack with notable salinity increase, indicating the impact of saltwater intrusion on the bottom hydrodynamics. The results showed the occurrence of high-concentration suspended sediment was probably related to combined effects of bottom salinity intrusion, turbulent kinetic energy(TKE) and local stratification due to density

The Effects of Temperature and Salinity on Mg Incorporation in Planktonic Foraminifera Globigerinoides ruber (white): Results from a Global Sediment Trap Mg/Ca Database

Science.gov (United States)

Gray, W. R.; Weldeab, S.; Lea, D. W.

2015-12-01

Mg/Ca in Globigerinoides ruber is arguably the most important proxy for sea surface temperature (SST) in tropical and sub tropical regions, and as such guides our understanding of past climatic change in these regions. However, the sensitivity of Mg/Ca to salinity is debated; while analysis of foraminifera grown in cultures generally indicates a sensitivity of 3 - 6% per salinity unit, core-top studies have suggested a much higher sensitivity of between 15 - 27% per salinity unit, bringing the utility of Mg/Ca as a SST proxy into dispute. Sediment traps circumvent the issues of dissolution and post-depositional calcite precipitation that hamper core-top calibration studies, whilst allowing the analysis of foraminifera that have calcified under natural conditions within a well constrained period of time. We collated previously published sediment trap/plankton tow G. ruber (white) Mg/Ca data, and generated new Mg/Ca data from a sediment trap located in the highly-saline tropical North Atlantic, close to West Africa. Calcification temperature and salinity were calculated for the time interval represented by each trap/tow sample using World Ocean Atlas 2013 data. The resulting dataset comprises >240 Mg/Ca measurements (in the size fraction 150 - 350 µm), that span a temperature range of 18 - 28 °C and 33.6 - 36.7 PSU. Multiple regression of the dataset reveals a temperature sensitivity of 7 ± 0.4% per °C (p < 2.2*10-16) and a salinity sensitivity of 4 ± 1% per salinity unit (p = 2*10-5). Application of this calibration has significant implications for both the magnitude and timing of glacial-interglacial temperature changes when variations in salinity are accounted for.

Use of sediment source fingerprinting to assess the role of subsurface erosion in the supply of fine sediment in a degraded catchment in the Eastern Cape, South Africa.

Science.gov (United States)

Manjoro, Munyaradzi; Rowntree, Kate; Kakembo, Vincent; Foster, Ian; Collins, Adrian L

2017-06-01

Sediment source fingerprinting has been successfully deployed to provide information on the surface and subsurface sources of sediment in many catchments around the world. However, there is still scope to re-examine some of the major assumptions of the technique with reference to the number of fingerprint properties used in the model, the number of model iterations and the potential uncertainties of using more than one sediment core collected from the same floodplain sink. We investigated the role of subsurface erosion in the supply of fine sediment to two sediment cores collected from a floodplain in a small degraded catchment in the Eastern Cape, South Africa. The results showed that increasing the number of individual fingerprint properties in the composite signature did not improve the model goodness-of-fit. This is still a much debated issue in sediment source fingerprinting. To test the goodness-of-fit further, the number of model repeat iterations was increased from 5000 to 30,000. However, this did not reduce uncertainty ranges in modelled source proportions nor improve the model goodness-of-fit. The estimated sediment source contributions were not consistent with the available published data on erosion processes in the study catchment. The temporal pattern of sediment source contributions predicted for the two sediment cores was very different despite the cores being collected in close proximity from the same floodplain. This highlights some of the potential limitations associated with using floodplain cores to reconstruct catchment erosion processes and associated sediment source contributions. For the source tracing approach in general, the findings here suggest the need for further investigations into uncertainties related to the number of fingerprint properties included in un-mixing models. The findings support the current widespread use of ≤5000 model repeat iterations for estimating the key sources of sediment samples. Copyright © 2016 Elsevier

Global distribution of radiolytic H2 production in marine sediment and implications for subsurface life

Science.gov (United States)

Sauvage, J.; Flinders, A. F.; Spivack, A. J.; D'Hondt, S.

2017-12-01

We present the first global estimate of radiolytic H2production in marine sediment. Knowledge of microbial electron donor production rates is critical to understand the bioenergetics of Earth's subsurface ecosystems In marine sediment, radiolysis of water by radiation from naturally occurring radionuclides leads to production of reduced (H2) and oxidized (H2O2, O2) species. Water radiolysis is catalyzed by marine sediment. The magnitude of catalysis depends on sediment composition and radiation type. Deep-sea clay is especially effective at enhancing H2 yields, increasing yield by more than an order of magnitude relative to pure water. This previously unrecognized catalytic effect of geological materials on radiolytic H2 production is important for fueling microbial life in the subseafloor, especially in sediment with high catalytic power. Our estimate of radiolytic H2 production is based on spatially integrating a previously published model and uses (i) experimentally constrained radiolytic H2 yields for the principal marine sediment types, (ii) bulk sediment radioactive element content of sediment cores in three ocean basins (N. Atlantic, N. and S. Pacific), and global distributions of (iii) seafloor lithology, (iv) sediment porosity, and (v) sediment thickness. We calculate that global radiolytic H2 production in marine sediment is 1.6E+12 mol H2 yr-1. This production rate is small relative to the annual rate of photosynthetic organic-matter production in the surface ocean. The globally integrated ratio of radiolytic H2 production relative to photosynthetic primary production is 4.1E-4, based on electron equivalences. Although small relative to global photosynthetic biomass production, sediment-catalyzed production of radiolytic products is significant in the subseafloor. Our analysis of 9 sites in the N. Atlantic, N. and S. Pacific suggests that H2 is the primary microbial fuel in organic-poor sediment older than a few million years; at these sites, calculated

Sediment and Nutrient Contributions from Subsurface Drains and Point Sources to an Agricultural Watershed

Directory of Open Access Journals (Sweden)

Bonnie Ball Coelho

2010-03-01

Full Text Available Excess sediment and nutrients in surface waters can threaten aquatic life. To determine the relative importance of subsurface drainage as a pathway for movement of sediment and nutrients to surface waters, loading from various tile systems was compared to that from sewage treatment plants (STP within the same watershed. Movement through tiles comprised 1 to 8% of estimated total (overland plus tile annual sediment loading from the respective areas drained by the tile. Load during the growing season from five closed drain- age systems without surface inlets averaged 5 kg sediment/ha, 0.005 kg dissolved reactive P (DRP/ha, 0.003 kg NH4-N/ha, and 3.8 kg NO3-N/ha; and from two open drainage systems with surface inlets averaged 14 kg sediment/ha, 0.03 kg DRP/ha, 0.04 kg NH4-N/ha, and 3.1 kg NO3-N/ha. The eight STP contributed about 44 530 kg suspended sediments, 3380 kg total P, 1340 kg NH4-N, and 116 900 kg NO3-N to the watershed annually. Drainage systems added less NH4-N and P, but more NO3-N and suspended solids to surface waters than STP. Tile drainage pathways for NO3-N, STP in the case of P, and overland pathways for sediment are indicated as targets to control loading in artificially drained agricultural watersheds.

Salinity shapes microbial diversity and community structure in surface sediments of the Qinghai-Tibetan Lakes.

Science.gov (United States)

Yang, Jian; Ma, Li'an; Jiang, Hongchen; Wu, Geng; Dong, Hailiang

2016-04-26

Investigating microbial response to environmental variables is of great importance for understanding of microbial acclimatization and evolution in natural environments. However, little is known about how microbial communities responded to environmental factors (e.g. salinity, geographic distance) in lake surface sediments of the Qinghai-Tibetan Plateau (QTP). In this study, microbial diversity and community structure in the surface sediments of nine lakes on the QTP were investigated by using the Illumina Miseq sequencing technique and the resulting microbial data were statistically analyzed in combination with environmental variables. The results showed total microbial community of the studied lakes was significantly correlated (r = 0.631, P diversity and community structure in the studied samples. In addition, the abundant and rare taxa (OTUs with relative abundance higher than 1% and lower than 0.01% within one sample, respectively) were significantly (P < 0.05) correlated (r = 0.427 and 0.783, respectively) with salinity, suggesting rare taxa might be more sensitive to salinity than their abundant counterparts, thus cautions should be taken in future when evaluating microbial response (abundant vs. rare sub-communities) to environmental conditions.

Elevation of surficial sediment/basalt contact in the Subsurface Disposal Area, Idaho National Engineering Laboratory

International Nuclear Information System (INIS)

Hubbell, J.M.

1993-01-01

The elevation of the surficial sediment/basalt contact at the Subsurface Disposal Area (SDA), within the Radioactive Waste Management Complex (RWMC) is presented to provide a data base for future remedial actions at this site. About 1,300 elevation data from published and unpublished reports, maps, and surveyors notes were compiled to generate maps and cross-sections of the surficial sediment/basalt contact. In general, an east to west trending depression exists in the south central portion of the SDA with basalt closer to land surface on the northern and southern boundaries of the SDA. The lowest elevation of the surficial sediment/basalt contact is 4,979 ft and the greatest is land surface at 5,012 ft. The median elevation of the sediment/basalt interface is 4,994 ft. The median depth to basalt in the SDA is 16 ft if land surface elevation is assumed to be 5,010 ft. The depth from land surface to the sediment/basalt interface ranges from 24 ft in the southeast corner of the SDA to less than 3 ft at the north-central boundary of the SDA

Nitrogen patterns in subsurface waters of the Yzeron stream: effect of combined sewer overflows and subsurface-surface water mixing.

Science.gov (United States)

Aucour, A M; Bariac, T; Breil, P; Namour, P; Schmitt, L; Gnouma, R; Zuddas, P

2013-01-01

Urbanization subjects streams to increased nitrogen loads. Therefore studying nitrogen forms at the interface between urban stream and groundwater is important for water resource management. In this study we report results on water δ(18)O and nitrogen forms in subsurface waters of a stream (Yzeron, France). The sites studied were located upstream and downstream of combined sewer overflows (CSO) in a rural area and a periurban area, respectively. Water δ(18)O allowed us to follow the mixing of subsurface water with surface water. Dissolved organic nitrogen and organic carbon of fine sediment increased by 20-30% between rural and periurban subsurface waters in the cold season, under high flow. The highest nitrate levels were observed in rural subsurface waters in the cold season. The lowest nitrate levels were found in periurban subsurface waters in the warm season, under low flow. They corresponded to slow exchange of subsurface waters with channel water. Thus reduced exchange between surface and subsurface waters and organic-matter-rich input seemed to favor nitrate reduction in the downstream, periurban, subsurface waters impacted by CSO.

Final report - Reduction of mercury in saturated subsurface sediments and its potential to mobilize mercury in its elemental form

Energy Technology Data Exchange (ETDEWEB)

Bakray, Tamar [Rutgers University

2013-06-13

The goal of our project was to investigate Hg(II) reduction in the deep subsurface. We focused on microbial and abiotic pathways of reduction and explored how it affected the toxicity and mobility of Hg in this unique environment. The project’s tasks included: 1. Examining the role of mer activities in the reduction of Hg(II) in denitrifying enrichment cultures; 2. Investigating the biotic/abiotic reduction of Hg(II) under iron reducing conditions; 3. Examining Hg(II) redox transformations under anaerobic conditions in subsurface sediments from DOE sites.

Impacts of flamingos on saline lake margin and shallow lacustrine sediments in the Kenya Rift Valley

Science.gov (United States)

Scott, Jennifer J.; Renaut, Robin W.; Owen, R. Bernhart

2012-11-01

Studies of modern, Holocene, and Pleistocene sediments around saline to hypersaline, alkaline Lake Bogoria and Lake Magadi show that evidence of flamingo activity in marginal areas of these lakes is nearly ubiquitous. Flamingos produce discrete structures such as webbed footprints (~ 9 cm long, ~ 11 cm wide) and nest mounds (~ 30 cm wide, ~ 20 cm high), and they also extensively rework sediments in delta front, delta plain, and shoreline areas. Large (~ 0.5-2 cm in diameter), pinched, 'bubble pores' and ped-like mud clumps are formed by the trampling and churning of wet clay-rich sediments in these settings. Flamingo nest mounds, although superficially similar to some thrombolite mounds, are typically internally structureless, unless formed on pre-existing sediments that preserve internal structures. The flamingo mounds consist of a dense, packed oval-shaped core, a surrounding 'body' of packed sediment, and an external layer with a ped-like texture of clumped mud. The nests may contain open holes from roots or feather shafts incorporated into the nest, and (or) burrows produced once the nests are abandoned. In areas with high densities of flamingos, lake margin sediments may be preferentially compacted, particularly at breeding sites, and become resistant to subaerial erosion and the effects of transgressive ravinement on time scales ranging from seasons to tens of thousands of years. The relatively well-compacted nest mounds and associated sediments also contribute to the stability of delta distributary channels during regressive-transgressive cycles, and can lead to the minor channelization of unconfined flows where currents are diverted around nest mounds. Pleistocene exhumed surfaces of relatively well-indurated lake margin sediments at Lake Bogoria and Lake Magadi that are interpreted as combined regressive and transgressive surfaces (flooding surface/sequence boundary) preserve evidence of flamingo activities, and are overlain by younger, porous lacustrine

Treatability of a Highly-Impaired, Saline Surface Water for Potential Urban Water Use

Directory of Open Access Journals (Sweden)

Frederick Pontius

2018-03-01

Full Text Available As freshwater sources of drinking water become limited, cities and urban areas must consider higher-salinity waters as potential sources of drinking water. The Salton Sea in the Imperial Valley of California has a very high salinity (43 ppt, total dissolved solids (70,000 mg/L, and color (1440 CU. Future wetlands and habitat restoration will have significant ecological benefits, but salinity levels will remain elevated. High salinity eutrophic waters, such as the Salton Sea, are difficult to treat, yet more desirable sources of drinking water are limited. The treatability of Salton Sea water for potential urban water use was evaluated here. Coagulation-sedimentation using aluminum chlorohydrate, ferric chloride, and alum proved to be relatively ineffective for lowering turbidity, with no clear optimum dose for any of the coagulants tested. Alum was most effective for color removal (28 percent at a dose of 40 mg/L. Turbidity was removed effectively with 0.45 μm and 0.1 μm microfiltration. Bench tests of Salton Sea water using sea water reverse osmosis (SWRO achieved initial contaminant rejections of 99 percent salinity, 97.7 percent conductivity, 98.6 percent total dissolved solids, 98.7 percent chloride, 65 percent sulfate, and 99.3 percent turbidity.

Structure and function of subsurface microbial communities affecting radionuclide transport and bioimmobilization

Energy Technology Data Exchange (ETDEWEB)

Kostka, Joel E. [Florida State Univ., Tallahassee, FL (United States); Prakash, Om [Florida State Univ., Tallahassee, FL (United States); Green, Stefan J. [Florida State Univ., Tallahassee, FL (United States); Akob, Denise [Florida State Univ., Tallahassee, FL (United States); Jasrotia, Puja [Florida State Univ., Tallahassee, FL (United States); Kerkhof, Lee [Rutgers Univ., New Brunswick, NJ (United States); Chin, Kuk-Jeong [Georgia State Univ., Atlanta, GA (United States); Sheth, Mili [Georgia State Univ., Atlanta, GA (United States); Keller, Martin [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Venkateswaran, Amudhan [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Elkins, James G. [Univ. of Illinois, Urbana-Champaign, IL (United States); Stucki, Joseph W. [Univ. of Illinois, Urbana-Champaign, IL (United States)

2012-05-01

Our objectives were to: 1) isolate and characterize novel anaerobic prokaryotes from subsurface environments exposed to high levels of mixed contaminants (U(VI), nitrate, sulfate), 2) elucidate the diversity and distribution of metabolically active metal- and nitrate-reducing prokaryotes in subsurface sediments, and 3) determine the biotic and abiotic mechanisms linking electron transport processes (nitrate, Fe(III), and sulfate reduction) to radionuclide reduction and immobilization. Mechanisms of electron transport and U(VI) transformation were examined under near in situ conditions in sediment microcosms and in field investigations. Field sampling was conducted at the Oak Ridge Field Research Center (ORFRC), in Oak Ridge, Tennessee. The ORFRC subsurface is exposed to mixed contamination predominated by uranium and nitrate. In short, we effectively addressed all 3 stated objectives of the project. In particular, we isolated and characterized a large number of novel anaerobes with a high bioremediation potential that can be used as model organisms, and we are now able to quantify the function of subsurface sedimentary microbial communities in situ using state-of-the-art gene expression methods (molecular proxies).

Predicting sediment sorption coefficients for linear alkylbenzenesulfonate congeners from polyacrylate-water partition coefficients at different salinities.

NARCIS (Netherlands)

Rico Rico, A.; Droge, S.T.J.|info:eu-repo/dai/nl/304834017; Hermens, J.L.M.|info:eu-repo/dai/nl/069681384

2010-01-01

The effect of the molecular structure and the salinity on the sorption of the anionic surfactant linear alkylbenzenesulfonate (LAS) to marine sediment has been studied. The analysis of several individual LAS congeners in seawater and of one specific LAS congener at different dilutions of seawater

Potential nitrate removal in a coastal freshwater sediment (Haringvliet Lake, The Netherlands) and response to salinization

NARCIS (Netherlands)

Laverman, A.M.; Canavan, R.W.; Slomp, C.P.; Van Cappellen, P.

2007-01-01

Nitrogen transformations and their response to salinization were studied in bottom sediment of a coastal freshwater lake (Haringvliet Lake, The Netherlands). The lake was formed as the result of a river impoundment along the south-western coast of the Netherlands, and is currently targeted for

Features of acid-saline systems of Southern Australia

International Nuclear Information System (INIS)

Dickson, Bruce L.; Giblin, Angela M.

2009-01-01

The discovery of layered, SO 4 -rich sediments on the Meridiani Planum on Mars has focused attention on understanding the formation of acid-saline lakes. Many salt lakes have formed in southern Australia where regional groundwaters are characterized by acidity and high salinity and show features that might be expected in the Meridiani sediments. Many (but not all) of the acid-saline Australian groundwaters are found where underlying Tertiary sediments are sulfide-rich. When waters from the formations come to the surface or interact with oxidised meteoric water, acid groundwaters result. In this paper examples of such waters around Lake Tyrrell, Victoria, and Lake Dey-Dey, South Australia, are reviewed. The acid-saline groundwaters typically have dissolved solids of 30-60 g/L and pH commonly 4 and MgSO 4 ) or differential separation of elements with differing solubility (K, Na, Ti, Cr). Thus, it is considered unlikely that groundwaters or evaporative salt-lake systems, as found on earth, were involved. Instead, these features point to a water-poor system with local alteration and very little mobilization of elements

High resolution numerical investigation on the effect of convective instability on long term CO2 storage in saline aquifers

International Nuclear Information System (INIS)

Lu, C; Lichtner, P C

2007-01-01

CO 2 sequestration (capture, separation, and long term storage) in various geologic media including depleted oil reservoirs, saline aquifers, and oceanic sediments is being considered as a possible solution to reduce green house gas emissions. Dissolution of supercritical CO 2 in formation brines is considered an important storage mechanism to prevent possible leakage. Accurate prediction of the plume dissolution rate and migration is essential. Analytical analysis and numerical experiments have demonstrated that convective instability (Rayleigh instability) has a crucial effect on the dissolution behavior and subsequent mineralization reactions. Global stability analysis indicates that a certain grid resolution is needed to capture the features of density-driven fingering phenomena. For 3-D field scale simulations, high resolution leads to large numbers of grid nodes, unfeasible for a single workstation. In this study, we investigate the effects of convective instability on geologic sequestration of CO 2 by taking advantage of parallel computing using the code PFLOTRAN, a massively parallel 3-D reservoir simulator for modeling subsurface multiphase, multicomponent reactive flow and transport based on continuum scale mass and energy conservation equations. The onset, development and long-term fate of a supercritical CO 2 plume will be resolved with high resolution numerical simulations to investigate the rate of plume dissolution caused by fingering phenomena

Geochemical characterization of subsurface sediments in the Netherlands

NARCIS (Netherlands)

Huisman, D.J.

1998-01-01

Traditionally, the Netherlands' subsurface is mainly used to obtain good quality drinking and industrial waters from the different aquifers. Due to the lack of space on the surface, increasing environmental problems and demand for energy, the subsurface will be used increasingly for other

STRUCTURE AND FUNCTION OF SUBSURFACE MICROBIAL COMMUNITIES AFFECTING RADIONUCLIDE TRANSPORT AND BIOIMMOBILIZATION

Energy Technology Data Exchange (ETDEWEB)

Joel E. Kostka; Lee Kerkhof; Kuk-Jeong Chin; Martin Keller; Joseph W. Stucki

2011-06-15

The objectives of this project were to: (1) isolate and characterize novel anaerobic prokaryotes from subsurface environments exposed to high levels of mixed contaminants (U(VI), nitrate, sulfate), (2) elucidate the diversity and distribution of metabolically active metal- and nitrate-reducing prokaryotes in subsurface sediments, and (3) determine the biotic and abiotic mechanisms linking electron transport processes (nitrate, Fe(III), and sulfate reduction) to radionuclide reduction and immobilization. Mechanisms of electron transport and U(VI) transformation were examined under near in situ conditions in sediment microcosms and in field investigations at the Oak Ridge Field Research Center (ORFRC), in Oak Ridge, Tennessee, where the subsurface is exposed to mixed contamination predominated by uranium and nitrate. A total of 20 publications (16 published or 'in press' and 4 in review), 10 invited talks, and 43 contributed seminars/ meeting presentations were completed during the past four years of the project. PI Kostka served on one proposal review panel each year for the U.S. DOE Office of Science during the four year project period. The PI leveraged funds from the state of Florida to purchase new instrumentation that aided the project. Support was also leveraged by the PI from the Joint Genome Institute in the form of two successful proposals for genome sequencing. Draft genomes are now available for two novel species isolated during our studies and 5 more genomes are in the pipeline. We effectively addressed each of the three project objectives and research highlights are provided. Task I - Isolation and characterization of novel anaerobes: (1) A wide range of pure cultures of metal-reducing bacteria, sulfate-reducing bacteria, and denitrifying bacteria (32 strains) were isolated from subsurface sediments of the Oak Ridge Field Research Center (ORFRC), where the subsurface is exposed to mixed contamination of uranium and nitrate. These isolates which

Evaluation of Near-Surface Gases in Marine Sediments to Assess Subsurface Petroleum Gas Generation and Entrapment

Directory of Open Access Journals (Sweden)

Michael A. Abrams

2017-05-01

Full Text Available Gases contained within near-surface marine sediments can be derived from multiple sources: shallow microbial activity, thermal cracking of organic matter and inorganic materials, or magmatic-mantle degassing. Each origin will display a distinctive hydrocarbon and non-hydrocarbon composition as well as compound-specific isotope signature and thus the interpretation of origin should be relatively straightforward. Unfortunately, this is not always the case due to in situ microbial alteration, non-equilibrium phase partitioning, mixing, and fractionation related to the gas extraction method. Sediment gases can reside in the interstitial spaces, bound to mineral or organic surfaces and/or entrapped in carbonate inclusions. The interstitial sediment gases are contained within the sediment pore space, either dissolved in the pore waters (solute or as free (vapour gas. The bound gases are believed to be attached to organic and/or mineral surfaces, entrapped in structured water or entrapped in authigenic carbonate inclusions. The purpose of this paper is to provide a review of the gas types found within shallow marine sediments and examine issues related to gas sampling and extraction. In addition, the paper will discuss how to recognise mixing, alteration and fractionation issues to best interpret the seabed geochemical results and determine gas origin to assess subsurface petroleum gas generation and entrapment.

Estuarine turbidity, flushing, salinity, and circulation

Science.gov (United States)

Pritchard, D. W.

1972-01-01

The effects of estuarine turbidity, flushing, salinity, and circulation on the ecology of the Chesapeake Bay are discussed. The sources of fresh water, the variations in salinity, and the circulation patterns created by temperature and salinity changes are analyzed. The application of remote sensors for long term observation of water temperatures is described. The sources of sediment and the biological effects resulting from increased sediments and siltation are identified.

Hydrogen utilization potential in subsurface sediments

Directory of Open Access Journals (Sweden)

Rishi Ram Adhikari

2016-01-01

Full Text Available Subsurface microbial communities undertake many terminal electron-accepting processes, often simultaneously. Using a tritium-based assay, we measured the potential hydrogen oxidation catalyzed by hydrogenase enzymes in several subsurface sedimentary environments (Lake Van, Barents Sea, Equatorial Pacific and Gulf of Mexico with different predominant electron-acceptors. Hydrogenases constitute a diverse family of enzymes expressed by microorganisms that utilize molecular hydrogen as a metabolic substrate, product or intermediate. The assay reveals the potential for utilizing molecular hydrogen and allows qualitative detection of microbial activity irrespective of the predominant electron-accepting process. Because the method only requires samples frozen immediately after recovery, the assay can be used for identifying microbial activity in subsurface ecosystems without the need to preserve live material.We measured potential hydrogen oxidation rates in all samples from multiple depths at several sites that collectively span a wide range of environmental conditions and biogeochemical zones. Potential activity normalized to total cell abundance ranges over five orders of magnitude and varies, dependent upon the predominant terminal electron acceptor. Lowest per-cell potential rates characterize the zone of nitrate reduction and highest per-cell potential rates occur in the methanogenic zone. Possible reasons for this relationship to predominant electron acceptor include (i increasing importance of fermentation in successively deeper biogeochemical zones and (ii adaptation of H2ases to successively higher concentrations of H2 in successively deeper zones.

Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments

Science.gov (United States)

Holmes, Dawn E.; O'Neil, Regina A.; Vrionis, Helen A.; N'Guessan, Lucie A.; Ortiz-Bernad, Irene; Larrahondo, Maria J.; Adams, Lorrie A.; Ward, Joy A.; Nicoll , Julie S.; Nevin, Kelly P.; Chavan, Milind A.; Johnson, Jessica P.; Long, Philip E.; Lovely, Derek R.

2007-01-01

There are distinct differences in the physiology of Geobacter species available in pure culture. Therefore, to understand the ecology of Geobacter species in subsurface environments, it is important to know which species predominate. Clone libraries were assembled with 16S rRNA genes and transcripts amplified from three subsurface environments in which Geobacter species are known to be important members of the microbial community: (1) a uranium-contaminated aquifer located in Rifle, CO, USA undergoing in situ bioremediation; (2) an acetate-impacted aquifer that serves as an analog for the long-term acetate amendments proposed for in situ uranium bioremediation and (3) a petroleum-contaminated aquifer in which Geobacter species play a role in the oxidation of aromatic hydrocarbons coupled with the reduction of Fe(III). The majority of Geobacteraceae 16S rRNA sequences found in these environments clustered in a phylogenetically coherent subsurface clade, which also contains a number of Geobacter species isolated from subsurface environments. Concatamers constructed with 43 Geobacter genes amplified from these sites also clustered within this subsurface clade. 16S rRNA transcript and gene sequences in the sediments and groundwater at the Rifle site were highly similar, suggesting that sampling groundwater via monitoring wells can recover the most active Geobacter species. These results suggest that further study of Geobacter species in the subsurface clade is necessary to accurately model the behavior of Geobacter species during subsurface bioremediation of metal and organic contaminants.

Feedback between residual circulations and sediment distribution in highly turbid estuaries: an analytical model

NARCIS (Netherlands)

Talke, S.A.|info:eu-repo/dai/nl/304823554; de Swart, H.E.|info:eu-repo/dai/nl/073449725; Schuttelaars, H.|info:eu-repo/dai/nl/164035656

2009-01-01

Motivated by field studies of the Ems estuary which show longitudinal gradients in bottom sediment concentration as high as O(0.01 kg/m4), we develop an analytical model for estuarine residual circulation based on currents from salinity gradients, turbidity gradients, and freshwater discharge.

Managing salinity in Upper Colorado River Basin streams: Selecting catchments for sediment control efforts using watershed characteristics and random forests models

Science.gov (United States)

Tillman, Fred; Anning, David W.; Heilman, Julian A.; Buto, Susan G.; Miller, Matthew P.

2018-01-01

Elevated concentrations of dissolved-solids (salinity) including calcium, sodium, sulfate, and chloride, among others, in the Colorado River cause substantial problems for its water users. Previous efforts to reduce dissolved solids in upper Colorado River basin (UCRB) streams often focused on reducing suspended-sediment transport to streams, but few studies have investigated the relationship between suspended sediment and salinity, or evaluated which watershed characteristics might be associated with this relationship. Are there catchment properties that may help in identifying areas where control of suspended sediment will also reduce salinity transport to streams? A random forests classification analysis was performed on topographic, climate, land cover, geology, rock chemistry, soil, and hydrologic information in 163 UCRB catchments. Two random forests models were developed in this study: one for exploring stream and catchment characteristics associated with stream sites where dissolved solids increase with increasing suspended-sediment concentration, and the other for predicting where these sites are located in unmonitored reaches. Results of variable importance from the exploratory random forests models indicate that no simple source, geochemical process, or transport mechanism can easily explain the relationship between dissolved solids and suspended sediment concentrations at UCRB monitoring sites. Among the most important watershed characteristics in both models were measures of soil hydraulic conductivity, soil erodibility, minimum catchment elevation, catchment area, and the silt component of soil in the catchment. Predictions at key locations in the basin were combined with observations from selected monitoring sites, and presented in map-form to give a complete understanding of where catchment sediment control practices would also benefit control of dissolved solids in streams.

Rapid anaerobic mineralization of pyridine in a subsurface sediment inoculated with a pyridine-degrading Alcaligenes sp

Energy Technology Data Exchange (ETDEWEB)

Ronen, Z; Bollag, J M [Pennsylvania State Univ., University Park, PA (United States). Lab. of Soil Biochemistry

1992-05-01

A denitrifying bacterium capable of pyridine mineralization under anaerobic conditions was isolated from polluted soil. The bacterium, identified as Alcaligenes sp., was used in inoculation experiments. A subsurface sediment from a polluted site was amended with 10 {mu}g/g {sup 14}C-labeled pyridine, and 250 {mu}g/g nitrate, and then inoculated with the bacterium at an inoculum size of 4.5x10{sup 7} cells/g. After 44 h incubation at 28deg C under anaerobic conditions, 67% of the radioactivity was recovered as {sup 14}CO{sub 2}: 2% was extracted with 50% methanol, and 24% was recovered by combustion of the sediment. Analysis of the methanol extract revealed that no pyridine could be detected in the inoculated sediment. In contrast, mineralization of pyridine by the native microflora in the sediment occurred much more slowly: After 7 days of incubation only 10% of the added radioactivity was recovered as {sup 14}CO{sub 2}. At an inoculum size of 2x10{sup 3} cells/g pyridine mineralization was not as effective as at an inoculum size of 2x10{sup 7} cells/g. It is presumed that suppression of the introduced bacteria by the native microflora of the sediment prevents degradation at a low inoculum size. Amending the sediment with nitrate and phosphate improved pyridine mineralization by the introduced bacterium. These findings demonstrate the feasibility of using soil inoculation anaerobically for the bioremediation of pyridine-polluted soils. (orig.).

Molecular analysis of deep subsurface bacteria

International Nuclear Information System (INIS)

Jimenez Baez, L.E.

1989-09-01

Deep sediments samples from site C10a, in Appleton, and sites, P24, P28, and P29, at the Savannah River Site (SRS), near Aiken, South Carolina were studied to determine their microbial community composition, DNA homology and mol %G+C. Different geological formations with great variability in hydrogeological parameters were found across the depth profile. Phenotypic identification of deep subsurface bacteria underestimated the bacterial diversity at the three SRS sites, since bacteria with the same phenotype have different DNA composition and less than 70% DNA homology. Total DNA hybridization and mol %G+C analysis of deep sediment bacterial isolates suggested that each formation is comprised of different microbial communities. Depositional environment was more important than site and geological formation on the DNA relatedness between deep subsurface bacteria, since more 70% of bacteria with 20% or more of DNA homology came from the same depositional environments. Based on phenotypic and genotypic tests Pseudomonas spp. and Acinetobacter spp.-like bacteria were identified in 85 million years old sediments. This suggests that these microbial communities might have been adapted during a long period of time to the environmental conditions of the deep subsurface

Potential Physiologies of Deep Branches on the Tree of Life with Deep Subsurface Samples from IODP Leg 347: Baltic Sea Paleoenvironment

Science.gov (United States)

Lloyd, K. G.; Bird, J. T.; Shumaker, A.

2014-12-01

Very little is known about how evolutionary branches that are distantly related to cultured microorganisms make a living in the deep subsurface marine environment. Here, sediments are cut-off from surface inputs of organic substrates for tens of thousands of years; yet somehow support a diverse population of microorganisms. We examined the potential metabolic and ecological roles of uncultured archaea and bacteria in IODP Leg 347: Baltic Sea Paleoenvironment samples, using quantitative PCR holes 60B, 63E, 65C, and 59C and single cell genomic analysis for hole 60B. We quantified changes in total archaea and bacteria, as well as deeply-branching archaeal taxa with depth. These sediment cores alternate between high and low salinities, following a glacial cycle. This allows changes in the quantities of these groups to be placed in the context of potentially vastly different organic matter sources. In addition, single cells were isolated, and their genomes were amplified and sequenced to allow a deeper look into potential physiologies of uncultured deeply-branching organisms found up to 86 meters deep in marine sediments. Together, these data provide deeper insight into the relationship between microorganisms and their organic matter substrates in this extreme environments.

Last Glacial Maximum Salinity Reconstruction

Science.gov (United States)

Homola, K.; Spivack, A. J.

2016-12-01

It has been previously demonstrated that salinity can be reconstructed from sediment porewater. The goal of our study is to reconstruct high precision salinity during the Last Glacial Maximum (LGM). Salinity is usually determined at high precision via conductivity, which requires a larger volume of water than can be extracted from a sediment core, or via chloride titration, which yields lower than ideal precision. It has been demonstrated for water column samples that high precision density measurements can be used to determine salinity at the precision of a conductivity measurement using the equation of state of seawater. However, water column seawater has a relatively constant composition, in contrast to porewater, where variations from standard seawater composition occur. These deviations, which affect the equation of state, must be corrected for through precise measurements of each ion's concentration and knowledge of apparent partial molar density in seawater. We have developed a density-based method for determining porewater salinity that requires only 5 mL of sample, achieving density precisions of 10-6 g/mL. We have applied this method to porewater samples extracted from long cores collected along a N-S transect across the western North Atlantic (R/V Knorr cruise KN223). Density was determined to a precision of 2.3x10-6 g/mL, which translates to salinity uncertainty of 0.002 gms/kg if the effect of differences in composition is well constrained. Concentrations of anions (Cl-, and SO4-2) and cations (Na+, Mg+, Ca+2, and K+) were measured. To correct salinities at the precision required to unravel LGM Meridional Overturning Circulation, our ion precisions must be better than 0.1% for SO4-/Cl- and Mg+/Na+, and 0.4% for Ca+/Na+, and K+/Na+. Alkalinity, pH and Dissolved Inorganic Carbon of the porewater were determined to precisions better than 4% when ratioed to Cl-, and used to calculate HCO3-, and CO3-2. Apparent partial molar densities in seawater were

Final Technical Report. Origins of subsurface microorganisms: Relating laboratory microcosm studies to a geologic time scale; FINAL

International Nuclear Information System (INIS)

Kieft, Thomas; Amy, Penny S.; Phillips, Fred M.

1998-01-01

This project was conducted as part of the Department of Energy's Deep Subsurface Science Program. It was part of a larger effort to determine the origins of subsurface microorganisms. Two hypotheses have been suggested for the origins of subsurface microorganisms: (1) microorganisms were deposited at the time of (or shortly after) geologic deposition of rocks and sediments (the in situ survival hypothesis), and (2) microorganisms have been transported from surface environments to subsurface rocks and sediments since the time of geologic deposition (transport hypothesis). These two hypotheses are not mutually exclusive. Depending on the geological setting, either one or both of these hypotheses may best explain microbial origins. Our project focused on the in situ survival hypothesis. We tested the hypothesis that microorganisms (individuals populations and communities) can survive long-term sequestration within subsurface sediments. Other objectives were to identify geologic conditions that favor long-term survival, identify physiological traits of microorganisms that favor long-term survival, and determine which groups of microorganisms are most likely to survive long-term sequestration in subsurface sediments. We tested this hypothesis using a combination of pure culture techniques in laboratory microcosms under controlled conditions and field experiments with buried subsurface sediments

Using geochemical indicators to distinguish high biogeochemical activity in floodplain soils and sediments

Energy Technology Data Exchange (ETDEWEB)

Kenwell, Amy [Hydrologic Sciences and Engineering Program, Colorado School of Mines, 1500 Illinois St., Golden, CO 80401 (United States); Navarre-Sitchler, Alexis, E-mail: asitchle@mines.edu [Hydrologic Sciences and Engineering Program, Colorado School of Mines, 1500 Illinois St., Golden, CO 80401 (United States); Prugue, Rodrigo [Hydrologic Sciences and Engineering Program, Colorado School of Mines, 1500 Illinois St., Golden, CO 80401 (United States); Spear, John R. [Department of Civil and Environmental Engineering, Colorado School of Mines, 1500 Illinois St., Golden, CO 80401 (United States); Hering, Amanda S. [Department of Applied Mathematics and Statistics, Colorado School of Mines, 1500 Illinois St., Golden, CO 80401 (United States); Maxwell, Reed M. [Hydrologic Sciences and Engineering Program, Colorado School of Mines, 1500 Illinois St., Golden, CO 80401 (United States); Carroll, Rosemary W.H. [Desert Research Institute, Division of Hydrologic Sciences, 2215 Raggio Parkway, Reno, NV 89512 (United States); Williams, Kenneth H. [Lawrence Berkeley National Laboratory, Berkeley, CA 94720 (United States)

2016-09-01

A better understanding of how microbial communities interact with their surroundings in physically and chemically heterogeneous subsurface environments will lead to improved quantification of biogeochemical reactions and associated nutrient cycling. This study develops a methodology to predict potential elevated rates of biogeochemical activity (microbial “hotspots”) in subsurface environments by correlating microbial DNA and aspects of the community structure with the spatial distribution of geochemical indicators in subsurface sediments. Multiple linear regression models of simulated precipitation leachate, HCl and hydroxylamine extractable iron and manganese, total organic carbon (TOC), and microbial community structure were used to identify sample characteristics indicative of biogeochemical hotspots within fluvially-derived aquifer sediments and overlying soils. The method has been applied to (a) alluvial materials collected at a former uranium mill site near Rifle, Colorado and (b) relatively undisturbed floodplain deposits (soils and sediments) collected along the East River near Crested Butte, Colorado. At Rifle, 16 alluvial samples were taken from 8 sediment cores, and at the East River, 46 soil/sediment samples were collected across and perpendicular to 3 active meanders and an oxbow meander. Regression models using TOC and TOC combined with extractable iron and manganese results were determined to be the best fitting statistical models of microbial DNA (via 16S rRNA gene analysis). Fitting these models to observations in both contaminated and natural floodplain deposits, and their associated alluvial aquifers, demonstrates the broad applicability of the geochemical indicator based approach. - Highlights: • Biogeochemical characterization of alluvial floodplain soils and sediments was performed to investigate parameters that may indicate microbial hot spot formation. • A correlation between geochemical parameters (total organic carbon and

Using geochemical indicators to distinguish high biogeochemical activity in floodplain soils and sediments

International Nuclear Information System (INIS)

Kenwell, Amy; Navarre-Sitchler, Alexis; Prugue, Rodrigo; Spear, John R.; Hering, Amanda S.; Maxwell, Reed M.; Carroll, Rosemary W.H.; Williams, Kenneth H.

2016-01-01

A better understanding of how microbial communities interact with their surroundings in physically and chemically heterogeneous subsurface environments will lead to improved quantification of biogeochemical reactions and associated nutrient cycling. This study develops a methodology to predict potential elevated rates of biogeochemical activity (microbial “hotspots”) in subsurface environments by correlating microbial DNA and aspects of the community structure with the spatial distribution of geochemical indicators in subsurface sediments. Multiple linear regression models of simulated precipitation leachate, HCl and hydroxylamine extractable iron and manganese, total organic carbon (TOC), and microbial community structure were used to identify sample characteristics indicative of biogeochemical hotspots within fluvially-derived aquifer sediments and overlying soils. The method has been applied to (a) alluvial materials collected at a former uranium mill site near Rifle, Colorado and (b) relatively undisturbed floodplain deposits (soils and sediments) collected along the East River near Crested Butte, Colorado. At Rifle, 16 alluvial samples were taken from 8 sediment cores, and at the East River, 46 soil/sediment samples were collected across and perpendicular to 3 active meanders and an oxbow meander. Regression models using TOC and TOC combined with extractable iron and manganese results were determined to be the best fitting statistical models of microbial DNA (via 16S rRNA gene analysis). Fitting these models to observations in both contaminated and natural floodplain deposits, and their associated alluvial aquifers, demonstrates the broad applicability of the geochemical indicator based approach. - Highlights: • Biogeochemical characterization of alluvial floodplain soils and sediments was performed to investigate parameters that may indicate microbial hot spot formation. • A correlation between geochemical parameters (total organic carbon and

Effects of salinity and particle concentration on sediment hydrodynamics and critical bed-shear-stress for erosion of fine grained sediments used in wetland restoration projects

Science.gov (United States)

Ghose-Hajra, M.; McCorquodale, A.; Mattson, G.; Jerolleman, D.; Filostrat, J.

2015-03-01

Sea-level rise, the increasing number and intensity of storms, oil and groundwater extraction, and coastal land subsidence are putting people and property at risk along Louisiana's coast, with major implications for human safety and economic health of coastal areas. A major goal towards re-establishing a healthy and sustainable coastal ecosystem has been to rebuild Louisiana's disappearing wetlands with fine grained sediments that are dredged or diverted from nearby rivers, channels and lakes to build land in open water areas. A thorough geo-hydrodynamic characterization of the deposited sediments is important in the correct design and a more realistic outcome assessment of the long-term performance measures for ongoing coastal restoration projects. This paper evaluates the effects of salinity and solid particle concentration on the re-suspension characteristics of fine-grained dredged sediments obtained from multiple geographic locations along the Gulf coast. The critical bed-shear-stress for erosion has been evaluated as a function of sedimentation time. The sediment hydrodynamic properties obtained from the laboratory testing were used in a numerical coastal sediment distribution model to aid in evaluating sediment diversions from the Mississippi River into Breton Sound and Barataria Bay.

Effects of salinity and particle concentration on sediment hydrodynamics and critical bed-shear-stress for erosion of fine grained sediments used in wetland restoration projects

Directory of Open Access Journals (Sweden)

M. Ghose-Hajra

2015-03-01

Full Text Available Sea-level rise, the increasing number and intensity of storms, oil and groundwater extraction, and coastal land subsidence are putting people and property at risk along Louisiana’s coast, with major implications for human safety and economic health of coastal areas. A major goal towards re-establishing a healthy and sustainable coastal ecosystem has been to rebuild Louisiana’s disappearing wetlands with fine grained sediments that are dredged or diverted from nearby rivers, channels and lakes to build land in open water areas. A thorough geo-hydrodynamic characterization of the deposited sediments is important in the correct design and a more realistic outcome assessment of the long-term performance measures for ongoing coastal restoration projects. This paper evaluates the effects of salinity and solid particle concentration on the re-suspension characteristics of fine-grained dredged sediments obtained from multiple geographic locations along the Gulf coast. The critical bed-shear-stress for erosion has been evaluated as a function of sedimentation time. The sediment hydrodynamic properties obtained from the laboratory testing were used in a numerical coastal sediment distribution model to aid in evaluating sediment diversions from the Mississippi River into Breton Sound and Barataria Bay.

Artificial Crab Burrows Facilitate Desalting of Rooted Mangrove Sediment in a Microcosm Study

Directory of Open Access Journals (Sweden)

Nathalie Pülmanns

2015-07-01

Full Text Available Water uptake by mangrove trees can result in salt accumulation in sediment around roots, negatively influencing growth. Tidal pumping facilitates salt release and can be enhanced by crab burrows. Similarly, flushing of burrows by incoming tidal water decreases sediment salinity. In contrast to burrows with multiple entrances, the role of burrows with one opening for salinity reduction is largely unknown. In a microcosm experiment we studied the effect of artificial, burrow-like macro-pores with one opening on the desalting of mangrove sediment and growth of Rhizophora mangle L. seedlings. Sediment salinity, seedling leaf area and seedling growth were monitored over six months. Artificial burrows facilitated salt release from the sediment after six weeks, but seedling growth was not influenced. To test whether crab burrows with one opening facilitate salt release in mangrove forests, sediment salinities were measured in areas with and without R. mangle stilt roots in North Brazil at the beginning and end of the wet season. In addition, burrows of Ucides cordatus were counted. High crab burrow densities and sediment salinities were associated with stilt root occurrence. Precipitation and salt accumulation by tree roots seem to have a larger effect on sediment salinity than desalting by U. cordatus burrows.

A Search for Freshwater in the Saline Aquifers of Coastal Bangladesh

Science.gov (United States)

Peters, C.; Hornberger, G. M.

2017-12-01

Can we locate pockets of freshwater amidst brackish groundwater in remote villages in Bangladesh? This study explores what we can infer about local groundwater-surface water (GW-SW) interactions in the polders of coastal Bangladesh. In this underdeveloped region, the shallow groundwater is primarily brackish with unpredictable apportioning of freshwater pockets. We use transects of piezometers, cores, electromagnetic induction, and water chemistry surveys to explore two sources of potential fresh groundwater: (1) tidal channel-aquifer exchange and (2) meteoric recharge. Freshwater is difficult to find due to disparate subsurface lithology, asymmetrical tidal dynamics, extreme seasonal fluctuations in rainfall, and limited field data. Observations suggest substantial lateral variability in shallow subsurface conductivity profiles as well as tidal pressure signals in piezometers. Nevertheless, active exchange of freshwater may be limited due to low permeability of banks and surface sediments limits. Small scale heterogeneity in delta formation likely caused much of the groundwater salinity variation. Without adequate ground truthing of groundwater quality, the ability to deduce the exact location of freshwater pockets may be restricted.

Salinity anomaly as a trigger for ENSO events.

Science.gov (United States)

Zhu, Jieshun; Huang, Bohua; Zhang, Rong-Hua; Hu, Zeng-Zhen; Kumar, Arun; Balmaseda, Magdalena A; Marx, Lawrence; Kinter, James L

2014-10-29

According to the classical theories of ENSO, subsurface anomalies in ocean thermal structure are precursors for ENSO events and their initial specification is essential for skillful ENSO forecast. Although ocean salinity in the tropical Pacific (particularly in the western Pacific warm pool) can vary in response to El Niño events, its effect on ENSO evolution and forecasts of ENSO has been less explored. Here we present evidence that, in addition to the passive response, salinity variability may also play an active role in ENSO evolution, and thus important in forecasting El Niño events. By comparing two forecast experiments in which the interannually variability of salinity in the ocean initial states is either included or excluded, the salinity variability is shown to be essential to correctly forecast the 2007/08 La Niña starting from April 2007. With realistic salinity initial states, the tendency to decay of the subsurface cold condition during the spring and early summer 2007 was interrupted by positive salinity anomalies in the upper central Pacific, which working together with the Bjerknes positive feedback, contributed to the development of the La Niña event. Our study suggests that ENSO forecasts will benefit from more accurate salinity observations with large-scale spatial coverage.

Hurricane-induced failure of low salinity wetlands

Science.gov (United States)

Howes, Nick C.; FitzGerald, Duncan M.; Hughes, Zoe J.; Georgiou, Ioannis Y.; Kulp, Mark A.; Miner, Michael D.; Smith, Jane M.; Barras, John A.

2010-01-01

During the 2005 hurricane season, the storm surge and wave field associated with Hurricanes Katrina and Rita eroded 527 km2 of wetlands within the Louisiana coastal plain. Low salinity wetlands were preferentially eroded, while higher salinity wetlands remained robust and largely unchanged. Here we highlight geotechnical differences between the soil profiles of high and low salinity regimes, which are controlled by vegetation and result in differential erosion. In low salinity wetlands, a weak zone (shear strength 500–1450 Pa) was observed ∼30 cm below the marsh surface, coinciding with the base of rooting. High salinity wetlands had no such zone (shear strengths > 4500 Pa) and contained deeper rooting. Storm waves during Hurricane Katrina produced shear stresses between 425–3600 Pa, sufficient to cause widespread erosion of the low salinity wetlands. Vegetation in low salinity marshes is subject to shallower rooting and is susceptible to erosion during large magnitude storms; these conditions may be exacerbated by low inorganic sediment content and high nutrient inputs. The dramatic difference in resiliency of fresh versus more saline marshes suggests that the introduction of freshwater to marshes as part of restoration efforts may therefore weaken existing wetlands rendering them vulnerable to hurricanes. PMID:20660777

Denitrifying bacteria from the genus Rhodanobacter dominate bacterial communities in the highly contaminated subsurface of a nuclear legacy waste site

Energy Technology Data Exchange (ETDEWEB)

Green, Stefan [Florida State University; Prakash, Om [Florida State University; Jasrotia, Puja [Florida State University; Overholt, Will [Florida State University; Cardenas, Erick [Michigan State University, East Lansing; Hubbard, Daniela [Florida State University; Tiedje, James M. [Michigan State University, East Lansing; Watson, David B [ORNL; Schadt, Christopher Warren [ORNL; Brooks, Scott C [ORNL; Kostka, Joel [Florida State University

2011-01-01

The effect of long-term mixed-waste contamination, particularly uranium and nitrate, on the microbial community in the terrestrial subsurface was investigated at the field scale at the Oak Ridge Integrated Field Research Challenge (ORIFRC) site in Oak Ridge, TN. The abundance, community composition, and distribution of groundwater microorganisms were examined across the site during two seasonal sampling events. At representative locations, subsurface sediment was also examined from two boreholes, one sampled from the most heavily contaminated area of the site and another from an area with low contamination. A suite of DNA- and RNA-based molecular tools were employed for community characterization, including quantitative PCR of ribosomal RNA and nitrite reductase genes, community composition fingerprinting analysis, and high-throughput pyrotag sequencing of rRNA genes. The results demonstrate that pH is a major driver of the subsurface microbial community structure, and denitrifying bacteria from the genus Rhodanobacter (class Gammaproteobacteria) dominate at low pH. The relative abundance of bacteria from this genus was positively correlated with lower pH conditions, and these bacteria were abundant and active in the most highly contaminated areas. Other factors, such as concentration of nitrogen species, oxygen and sampling season did not appear to strongly influence the distribution of Rhodanobacter. Results indicate that these organisms are acid-tolerant denitrifiers, well suited to the acidic, nitrate-rich subsurface conditions, and pH is confirmed as a dominant driver of bacterial community structure in this contaminated subsurface environment.

Effect of changes in water salinity on ammonium, calcium, dissolved inorganic carbon and influence on water/sediment dynamics

Science.gov (United States)

López, P.

2003-04-01

The effect of a sudden increase in salinity from 10 to 37 in porewater concentration and the benthic fluxes of ammonium, calcium and dissolved inorganic carbon were studied in sediments of a small coastal lagoon, the Albufera d'Es Grau (Minorca Island, Spain). The temporal effects of the changes in salinity were examined over 17 days using a single diffusion-reaction model and a mass-balance approach. After the salinity change, NH 4+-flux to the water and Ca-flux toward sediments increased (NH 4+-flux: 5000-3000 μmol m -2 d -1 in seawater and 600/250 μmol m -2 d -1 in brackish water; Ca-flux: -40/-76 meq m -2 d -1 at S=37 and -13/-10 meq m -2 d -1 at S=10); however, later NH 4+-flux decreased in seawater, reaching values lower than in brackish water. In contrast, Ca-flux presented similar values in both conditions. The fluxes of dissolved inorganic carbon, which were constant at S=10 (55/45 mmol m -2 d -1), increased during the experiment at S=37 (from ˜30 mmol m -2 d -1 immediately after salinity increase to ˜60 mmol m -2 d -1 after 17 days). In brackish conditions, NH 4+ and Ca 2+ fluxes were consistent with a single diffusion-reaction model that assumes a zero-order reaction for NH 4+ production and a first-order reaction for Ca 2+ production. In seawater, this model explained the Ca-flux observed, but did not account for the high initial flux of NH 4+. The mass balance for 17 days indicated a higher retention of NH 4+ in porewater in the littoral station in seawater conditions (9.5 mmol m -2 at S=37 and 1.6 mmol m -2 at S=10) and a significant reduction in the water consumption at both sites (5 mmol m -2 at S=37; 35/23 mmol m -2 at S=10). In contrast, accumulation of dissolved inorganic carbon in porewater was lower in seawater incubations (-10/-1 meq m -2 at S=37; 50/90 meq m -2 at S=10) and was linked to a higher efflux of CO 2 to the atmosphere, because of calcium carbonate precipitation in water (675/500 meq m -2). These results indicate that increased

Microbial activity in the terrestrial subsurface

International Nuclear Information System (INIS)

Kaiser, J.P.; Bollag, J.M.

1990-01-01

Little is known about the layers under the earth's crust. Only in recent years have techniques for sampling the deeper subsurface been developed to permit investigation of the subsurface environment. Prevailing conditions in the subsurface habitat such as nutrient availability, soil composition, redox potential, permeability and a variety of other factors can influence the microflora that flourish in a given environment. Microbial diversity varies between geological formations, but in general sandy soils support growth better than soils rich in clay. Bacteria predominate in subsurface sediments, while eukaryotes constitute only 1-2% of the microorganisms. Recent investigations revealed that most uncontaminated subsurface soils support the growth of aerobic heteroorganotrophic bacteria, but obviously anaerobic microorganisms also exist in the deeper subsurface habitat. The microorganisms residing below the surface of the earth are capable of degrading both natural and xenobiotic contaminants and can thereby adapt to growth under polluted conditions. (author) 4 tabs, 77 refs

In situ time-series measurements of subseafloor sediment properties

Science.gov (United States)

Wheatcroft, R.A.; Stevens, A.W.; Johnson, R.V.

2007-01-01

The capabilities and diversity of subsurface sediment sensors lags significantly from what is available for the water column, thereby limiting progress in understanding time-dependent seabed exchange and high-frequency acoustics. To help redress this imbalance, a new instrument, the autonomous sediment profiler (ASP), is described herein. ASP consists of a four-electrode, Wenner-type resistivity probe and a thermistor that log data at 0.1-cm vertical intervals over a 58-cm vertical profile. To avoid resampling the same spot on the seafloor, the probes are moved horizontally within a 20 times 100-cm-2 area in one of three preselected patterns. Memory and power capacities permit sampling at hourly intervals for up to 3-mo duration. The system was tested in a laboratory tank and shown to be able to resolve high-frequency sediment consolidation, as well as changes in sediment roughness. In a field test off the southern coast of France, the system collected resistivity and temperature data at hourly intervals for 16 d. Coupled with environmental data collected on waves, currents, and suspended sediment, the ASP is shown to be useful for understanding temporal evolution of subsurface sediment porosity, although no large depositional or erosional events occurred during the deployment. Following a rapid decrease in bottom-water temperature, the evolution of the subsurface temperature field was consistent with the 1-D thermal diffusion equation coupled with advection in the upper 3-4 cm. Collectively, the laboratory and field tests yielded promising results on time-dependent seabed change.

Sampling surface and subsurface particle-size distributions in wadable gravel-and cobble-bed streams for analyses in sediment transport, hydraulics, and streambed monitoring

Science.gov (United States)

Kristin Bunte; Steven R. Abt

2001-01-01

This document provides guidance for sampling surface and subsurface sediment from wadable gravel-and cobble-bed streams. After a short introduction to streams types and classifications in gravel-bed rivers, the document explains the field and laboratory measurement of particle sizes and the statistical analysis of particle-size distributions. Analysis of particle...

Denitrifying bacteria from the genus Rhodanobacter dominate bacterial communities in the highly contaminated subsurface of a nuclear legacy waste site.

Science.gov (United States)

Green, Stefan J; Prakash, Om; Jasrotia, Puja; Overholt, Will A; Cardenas, Erick; Hubbard, Daniela; Tiedje, James M; Watson, David B; Schadt, Christopher W; Brooks, Scott C; Kostka, Joel E

2012-02-01

The effect of long-term mixed-waste contamination, particularly uranium and nitrate, on the microbial community in the terrestrial subsurface was investigated at the field scale at the Oak Ridge Integrated Field Research Challenge (ORIFRC) site in Oak Ridge, TN. The abundance, community composition, and distribution of groundwater microorganisms were examined across the site during two seasonal sampling events. At representative locations, subsurface sediment was also examined from two boreholes, one sampled from the most heavily contaminated area of the site and another from an area with low contamination. A suite of DNA- and RNA-based molecular tools were employed for community characterization, including quantitative PCR of rRNA and nitrite reductase genes, community composition fingerprinting analysis, and high-throughput pyrotag sequencing of rRNA genes. The results demonstrate that pH is a major driver of the subsurface microbial community structure and that denitrifying bacteria from the genus Rhodanobacter (class Gammaproteobacteria) dominate at low pH. The relative abundance of bacteria from this genus was positively correlated with lower-pH conditions, and these bacteria were abundant and active in the most highly contaminated areas. Other factors, such as the concentration of nitrogen species, oxygen level, and sampling season, did not appear to strongly influence the distribution of Rhodanobacter bacteria. The results indicate that these organisms are acid-tolerant denitrifiers, well suited to the acidic, nitrate-rich subsurface conditions, and pH is confirmed as a dominant driver of bacterial community structure in this contaminated subsurface environment.

Effluent salinity of pipe drains and tube-wells : a case study from the Indus plain

NARCIS (Netherlands)

Kelleners, T.J.

2001-01-01

Keywords: anisotropy, aquifer, desalinization, effluent salinity, groundwater, irrigation, salt-water upconing, soil salinity, stream-function, subsurface drainage

Irrigated agriculture in arid and semi-arid zones often suffers from waterlogging and salinity problems.

Observed salinity changes in the Alappuzha mud bank, southwest coast of India and its implication to hypothesis of mudbank formation

Science.gov (United States)

Muraleedharan, K. R.; Dinesh Kumar, P. K.; Prasanna Kumar, S.; Srijith, B.; John, Sebin; Naveen Kumar, K. R.

2017-04-01

Alappuzha mud bank draws special attention among the twenty-mud bank locations reported along the Kerala coast by its remoteness from riverine sources. Among several hypotheses proposed for the formation of mud bank, the subterranean hypothesis was most accepted because of the occurrence of low salinity in the bottom layers. The present study provides evidence to show that occurrence of low salinity waters near the bottom in the mud bank region is an artifact of measuring technique employed for the measurement of salinity. The usual technique of conductivity based salinity determination completely fails in the presence of water laden with high amount of suspended sediment. Laboratory experiments were conducted to determine the response of electrode and conductivity cell sensor types to determine the salinity using a range of suspended sediment in the water column. Actual sediment samples from the mud bank region were utilized for the above studies. Based on field observations and experiments, we conclude that the low salinity was the manifestation of the presence highly turbid fluid mud formation in the mud bank region rather than the influence of fresh water.

Geoelectrical monitoring of simulated subsurface leakage to support high-hazard nuclear decommissioning at the Sellafield Site, UK

Energy Technology Data Exchange (ETDEWEB)

Kuras, Oliver, E-mail: oku@bgs.ac.uk [British Geological Survey, Keyworth, Nottingham NG12 5GG (United Kingdom); Wilkinson, Paul B.; Meldrum, Philip I.; Oxby, Lucy S. [British Geological Survey, Keyworth, Nottingham NG12 5GG (United Kingdom); Uhlemann, Sebastian [British Geological Survey, Keyworth, Nottingham NG12 5GG (United Kingdom); ETH-Swiss Federal Institute of Technology, Institute of Geophysics, Sonneggstr. 5, 8092 Zurich (Switzerland); Chambers, Jonathan E. [British Geological Survey, Keyworth, Nottingham NG12 5GG (United Kingdom); Binley, Andrew [Lancaster Environment Centre, Lancaster University, Lancaster LA1 4YQ (United Kingdom); Graham, James [National Nuclear Laboratory, Central Laboratory, Sellafield, Seascale, Cumbria CA20 1PG (United Kingdom); Smith, Nicholas T. [National Nuclear Laboratory, Central Laboratory, Sellafield, Seascale, Cumbria CA20 1PG (United Kingdom); School of Earth, Atmospheric and Environmental Sciences, Williamson Building, University of Manchester, Oxford Road, Manchester M13 9PL (United Kingdom); Atherton, Nick [Sellafield Ltd, Albion Square, Swingpump Lane, Whitehaven CA28 7NE (United Kingdom)

2016-10-01

A full-scale field experiment applying 4D (3D time-lapse) cross-borehole Electrical Resistivity Tomography (ERT) to the monitoring of simulated subsurface leakage was undertaken at a legacy nuclear waste silo at the Sellafield Site, UK. The experiment constituted the first application of geoelectrical monitoring in support of decommissioning work at a UK nuclear licensed site. Images of resistivity changes occurring since a baseline date prior to the simulated leaks revealed likely preferential pathways of silo liquor simulant flow in the vadose zone and upper groundwater system. Geophysical evidence was found to be compatible with historic contamination detected in permeable facies in sediment cores retrieved from the ERT boreholes. Results indicate that laterally discontinuous till units forming localized hydraulic barriers substantially affect flow patterns and contaminant transport in the shallow subsurface at Sellafield. We conclude that only geophysical imaging of the kind presented here has the potential to provide the detailed spatial and temporal information at the (sub-)meter scale needed to reduce the uncertainty in models of subsurface processes at nuclear sites. - Graphical abstract: 3D fractional resistivity change (resistivity change Δρ divided by baseline resistivity ρ{sub 0}) image showing results of Stage 1 silo liquor simulant injection. The black line delineates the preferential flow path; green cylinders show regions of historic contamination found in sediment cores from ERT boreholes. - Highlights: • 4D geoelectrical monitoring at Sellafield detected and tracked simulated silo leaks. • ERT revealed likely pathways of silo liquor simulant flow in the subsurface. • The method can reduce uncertainty in subsurface process models at nuclear sites. • Has been applied in this form at a UK nuclear licensed site for the first time • Study demonstrates value of 4D geophysics for nuclear decommissioning.

Characterization and consequences of intermittent sediment oxygenation by macrofauna: interpretation of high-resolution data sets

Science.gov (United States)

Meile, C. D.; Dwyer, I.; Zhu, Q.; Polerecky, L.; Volkenborn, N.

2017-12-01

Mineralization of organic matter in marine sediments leads to the depletion of oxygen, while activities of infauna introduce oxygenated seawater to the subsurface. In permeable sediments solutes can be transported from animals and their burrows into the surrounding sediment through advection over several centimeters. The intermittency of pumping leads to a spatially heterogeneous distribution of oxidants, with the temporal dynamics depending on sediment reactivity and activity patterns of the macrofauna. Here, we present results from a series of experiments in which these dynamics are studied at high spatial and temporal resolution using planar optodes. From O2, pH and pCO2 optode data, we quantify rates of O2 consumption and dissolved inorganic carbon production, as well alkalinity dynamics, with millimeter-scale resolution. Simulating intermittent irrigation by imposed pumping patterns in thin aquaria, we derive porewater flow patterns, which together with the production and consumption rates cause the chemical distributions and the establishment of reaction fronts. Our analysis thus establishes a quantitative connection between the locally dynamic redox conditions relevant for biogeochemical transformations and macroscopic observations commonly made with sediment cores.

Assessment of adsorption behavior of dibutyltin (DBT) to clay-rich sediments in comparison to the highly toxic tributyltin (TBT)

International Nuclear Information System (INIS)

Hoch, Marion; Alonso-Azcarate, Jacinto; Lischick, Martin

2003-01-01

Adsorption of dibutyltin to marine sediments is influenced by the type of predominating clay material. - The sorption behavior of dibutyltin (DBT) to four types of natural clay-rich sediments as a function of pH and salinity was studied. The strongest affinity of DBT was found to the montmorillonite-rich sediment, which is characterized by the highest specific surface area and cation exchange capacity of the four used sediments. K d values range between 12 and 40 (l/kg) on simulated marine conditions (pH 8, salinity 32%o). A maximum of DBT adsorption was found at a salinity of 0%o and pH 6. Desorption occurred over the entire studied pH range (4-8) when contaminated sediments interact with butyltin-free water. The maximum of desorption coincided with the minimum of adsorption, and vice versa. The results of DBT adsorption are compared with tributyltin (TBT), and the mechanism of the adsorption process is discussed

Groundwater penetrating radar and high resolution seismic for locating shallow faults in unconsolidated sediments

International Nuclear Information System (INIS)

Wyatt, D.E.

1993-01-01

Faults in shallow, unconsolidated sediments, particularly in coastal plain settings, are very difficult to discern during subsurface exploration yet have critical impact to groundwater flow, contaminant transport and geotechnical evaluations. This paper presents a case study using cross-over geophysical technologies in an area where shallow faulting is probable and known contamination exists. A comparison is made between Wenner and dipole-dipole resistivity data, ground penetrating radar, and high resolution seismic data. Data from these methods were verified with a cone penetrometer investigation for subsurface lithology and compared to existing monitoring well data. Interpretations from these techniques are compared with actual and theoretical shallow faulting found in the literature. The results of this study suggests that (1) the CPT study, combined with the monitoring well data may suggest that discontinuities in correlatable zones may indicate that faulting is present (2) the addition of the Wenner and dipole-dipole data may further suggest that offset zones exist in the shallow subsurface but not allow specific fault planes or fault stranding to be mapped (3) the high resolution seismic data will image faults to within a few feet of the surface but does not have the resolution to identify the faulting on the scale of our models, however it will suggest locations for upward continuation of faulted zones (4) offset 100 MHz and 200 MHz CMP GPR will image zones and features that may be fault planes and strands similar to our models (5) 300 MHz GPR will image higher resolution features that may suggest the presence of deeper faults and strands, and (6) the combination of all of the tools in this study, particularly the GPR and seismic may allow for the mapping of small scale, shallow faulting in unconsolidated sediments

High salinity conveys thermotolerance in the coral model Aiptasia

KAUST Repository

Gegner, Hagen M.

2017-12-15

The endosymbiosis between dinoflagellate algae of the genus Symbiodinium and stony corals provides the foundation of coral reef ecosystems. Coral bleaching, the expulsion of endosymbionts from the coral host tissue as a consequence of heat or light stress, poses a threat to reef ecosystem functioning on a global scale. Hence, a better understanding of the factors contributing to heat stress susceptibility and tolerance is needed. In this regard, some of the most thermotolerant corals also live in particularly saline habitats, but possible effects of high salinity on thermotolerance in corals are anecdotal. Here we test the hypothesis that high salinity may lead to increased thermotolerance. We conducted a heat stress experiment at low, intermediate, and high salinities using a set of host-endosymbiont combinations of the coral model Aiptasia. As expected, all host-endosymbiont combinations showed reduced photosynthetic efficiency and endosymbiont loss during heat stress, but the severity of bleaching was significantly reduced with increasing salinities for one of the host-endosymbiont combinations. Our results show that higher salinities can convey increased thermotolerance in Aiptasia, although this effect seems to be dependent on the particular host strain and/or associated symbiont type. This finding may help explain the extraordinarily high thermotolerance of corals in high salinity environments such as the Red Sea and the Persian/Arabian Gulf and provides novel insight regarding factors that contribute to thermotolerance. Since our results are based on a salinity effect in symbiotic sea anemones, it remains to be determined whether this salinity effect can also be observed in stony corals.

High salinity conveys thermotolerance in the coral model Aiptasia

KAUST Repository

Gegner, Hagen M.; Ziegler, Maren; Radecker, Nils; Buitrago Lopez, Carol; Aranda, Manuel; Voolstra, Christian R.

2017-01-01

The endosymbiosis between dinoflagellate algae of the genus Symbiodinium and stony corals provides the foundation of coral reef ecosystems. Coral bleaching, the expulsion of endosymbionts from the coral host tissue as a consequence of heat or light stress, poses a threat to reef ecosystem functioning on a global scale. Hence, a better understanding of the factors contributing to heat stress susceptibility and tolerance is needed. In this regard, some of the most thermotolerant corals also live in particularly saline habitats, but possible effects of high salinity on thermotolerance in corals are anecdotal. Here we test the hypothesis that high salinity may lead to increased thermotolerance. We conducted a heat stress experiment at low, intermediate, and high salinities using a set of host-endosymbiont combinations of the coral model Aiptasia. As expected, all host-endosymbiont combinations showed reduced photosynthetic efficiency and endosymbiont loss during heat stress, but the severity of bleaching was significantly reduced with increasing salinities for one of the host-endosymbiont combinations. Our results show that higher salinities can convey increased thermotolerance in Aiptasia, although this effect seems to be dependent on the particular host strain and/or associated symbiont type. This finding may help explain the extraordinarily high thermotolerance of corals in high salinity environments such as the Red Sea and the Persian/Arabian Gulf and provides novel insight regarding factors that contribute to thermotolerance. Since our results are based on a salinity effect in symbiotic sea anemones, it remains to be determined whether this salinity effect can also be observed in stony corals.

Remediation of contaminated subsurface materials by a metal-reducing bacterium

International Nuclear Information System (INIS)

Gorby, Y.A.; Amonette, J.E.; Fruchter, J.S.

1994-11-01

A biotic approach for remediating subsurface sediments and groundwater contaminated with carbon tetrachloride (CT) and chromium was evaluated. Cells of the Fe(iii)-reducing bacterium strain BrY were added to sealed, anoxic flasks containing Hanford groundwater, natural subsurface sediments, and either carbon tetrachloride, CT, or oxidized chromium, Cr(VI). With lactate as the electron donor, BrY transformed CT to chloroform (CF), which accumulated to about 1 0 % of the initial concentration of CT. The remainder of the CT was transformed to unidentified, nonvolatile compounds. Transformation of CT by BrY was an indirect process Cells reduced solid phase Fe(ill) to chemically reactive FE(II) that chemically transformed the chlorinated contaminant. Cr(VI), in contrast, was reduced by a direct enzymatic reaction in the presence or absence of Fe(III)-bearing sediments. These results demonstrate that Fe(ill)-reducing bacteria provide potential for transforming CT and for reducing CR(VI) to less toxic Cr(III). Technologies for stimulating indigenous populations of metal-reducing bacteria or for introducing specific metal-reducing bacteria to the subsurface are being investigated

Ecology, physiology, and phylogeny of deep subsurface Sphingomonas sp.

Science.gov (United States)

Fredrickson, J K; Balkwill, D L; Romine, M F; Shi, T

1999-10-01

Several new species of the genus Sphingomonas including S. aromaticivorans, S. stygia, and S. subterranea that have the capacity for degrading a broad range of aromatic compounds including toluene, naphthalene, xylenes, p-cresol, fluorene, biphenyl, and dibenzothiophene, were isolated from deeply-buried (>200 m) sediments of the US Atlantic coastal plain (ACP). In S. aromaticivorans F199, many of the genes involved in the catabolism of these aromatic compounds are encoded on a 184-kb conjugative plasmid; some of the genes involved in aromatic catabolism are plasmid-encoded in the other strains as well. Members of the genus Sphingomonas were common among aerobic heterotrophic bacteria cultured from ACP sediments and have been detected in deep subsurface environments elsewhere. The major source of organic carbon for heterotrophic metabolism in ACP deep aquifers is lignite that originated from plant material buried with the sediments. We speculate that the ability of the subsurface Sphingomonas strains to degrade a wide array of aromatic compounds represents an adaptation for utilization of sedimentary lignite. These and related subsurface Sphingomonas spp may play an important role in the transformation of sedimentary organic carbon in the aerobic and microaerobic regions of the deep aquifers of the ACP.

Martian sub-surface ionising radiation: biosignatures and geology

Directory of Open Access Journals (Sweden)

J. M. Ward

2007-07-01

Full Text Available The surface of Mars, unshielded by thick atmosphere or global magnetic field, is exposed to high levels of cosmic radiation. This ionising radiation field is deleterious to the survival of dormant cells or spores and the persistence of molecular biomarkers in the subsurface, and so its characterisation is of prime astrobiological interest. Here, we present modelling results of the absorbed radiation dose as a function of depth through the Martian subsurface, suitable for calculation of biomarker persistence. A second major implementation of this dose accumulation rate data is in application of the optically stimulated luminescence technique for dating Martian sediments.

We present calculations of the dose-depth profile in the Martian subsurface for various scenarios: variations of surface composition (dry regolith, ice, layered permafrost, solar minimum and maximum conditions, locations of different elevation (Olympus Mons, Hellas basin, datum altitude, and increasing atmospheric thickness over geological history. We also model the changing composition of the subsurface radiation field with depth compared between Martian locations with different shielding material, determine the relative dose contributions from primaries of different energies, and discuss particle deflection by the crustal magnetic fields.

Sulfate reduction controlled by organic matter availability in deep sediment cores from the saline, alkaline Lake Van (Eastern Anatolia, Turkey

Directory of Open Access Journals (Sweden)

Clemens eGlombitza

2013-07-01

Full Text Available As part of the International Continental Drilling Program (ICDP deep lake drilling project PaleoVan, we investigated sulfate reduction (SR in deep sediment cores of the saline, alkaline (salinity 21.4 ‰, alkalinity 155 m mEq-1, pH 9.81 Lake Van, Turkey. The cores were retrieved in the Northern Basin (NB and at Ahlat Ridge (AR and reached a maximum depth of 220 m. Additionally, 65-75 cm long gravity cores were taken at both sites. Sulfate reduction rates (SRR were low (≤ 22 nmol cm-3 d-1 compared to lakes with higher salinity and alkalinity, indicating that salinity and alkalinity are not limiting SR in Lake Van. Both sites differ significantly in rates and depth distribution of SR. In NB, SRR are up to 10 times higher than at AR. Sulfate reduction (SR could be detected down to 19 meters below lake floor (mblf at NB and down to 13 mblf at AR. Although SRR were lower at AR than at NB, organic matter (OM concentrations were higher. In contrast, dissolved OM in the pore water at AR contained more macromolecular OM and less low molecular weight OM. We thus suggest, that OM content alone cannot be used to infer microbial activity at Lake Van but that quality of OM has an important impact as well. These differences suggest that biogeochemical processes in lacustrine sediments are reacting very sensitively to small variations in geological, physical or chemical parameters over relatively short distances. 

Coastal circulation and sediment dynamics in Maunalua Bay, Oahu, Hawaii, measurements of waves, currents, temperature, salinity, and turbidity; November 2008-February 2009

Science.gov (United States)

Storlazzi, Curt D.; Presto, M. Katherine; Logan, Joshua B.; Field, Michael E.

2010-01-01

High-resolution measurements of waves, currents, water levels, temperature, salinity and turbidity were made in Maunalua Bay, southern Oahu, Hawaii, during the 2008-2009 winter to better understand coastal circulation, water-column properties, and sediment dynamics during a range of conditions (trade winds, kona storms, relaxation of trade winds, and south swells). A series of bottom-mounted instrument packages were deployed in water depths of 20 m or less to collect long-term, high-resolution measurements of waves, currents, water levels, temperature, salinity, and turbidity. These data were supplemented with a series of profiles through the water column to characterize the vertical and spatial variability in water-column properties within the bay. These measurements support the ongoing process studies being done as part of the U.S. Geological Survey (USGS) Coastal and Marine Geology Program's Pacific Coral Reef Project; the ultimate goal of these studies is to better understand the transport mechanisms of sediment, larvae, pollutants, and other particles in coral reef settings. Project Objectives The objective of this study was to understand the temporal variations in currents, waves, tides, temperature, salinity and turbidity within a coral-lined embayment that receives periodic discharges of freshwater and sediment from multiple terrestrial sources in the Maunalua Bay. Instrument packages were deployed for a three-month period during the 2008-2009 winter and a series of vertical profiles were collected in November 2008, and again in February 2009, to characterize water-column properties within the bay. Measurements of flow and water-column properties in Maunalua Bay provided insight into the potential fate of terrestrial sediment, nutrient, or contaminant delivered to the marine environment and coral larval transport within the embayment. Such data are useful for providing baseline information for future watershed decisions and for establishing guidelines for

Influence of food quality and salinity on dietary cadmium availability in Mytilus trossulus

International Nuclear Information System (INIS)

Widmeyer, Joline R.; Bendell-Young, Leah I.

2007-01-01

Surficial sediments (a combination of re-suspended and suspended sediments denoted as RSS) were collected from two distinct marine intertidal habitats. The two habitats differed with respect to salinity (25 ppt versus 15 ppt) and RSS % organic carbon content (24% versus 15%). Feeding experiments were conducted simulating the conditions in the two habitats to determine if salinity and RSS % organic carbon content affected cadmium accumulation in the pacific blue mussel Mytilus trossulus. Eleven different treatments including pure phytoplankton, collected RSS and control clay were radiolabeled with 109 Cd and pulse-fed to M. trossulus under both high (25 ppt) and low salinities (15 ppt). Metal uptake and accumulation was determined using the DYMBAM biodynamic metal bioaccumulation model. Although M. trossulus ingestion rates (IR) were significantly higher at 25 ppt as compared to 15 ppt, assimilation efficiencies (AEs) and [ 109 Cd] tissue levels were significantly lower at high as compared to low salinity exposures. Of the abiotic and biotic parameters examined and in contrast to other studies, differences in salinity rather than ingestion rate or food quality (as defined by % organic carbon content) seemed to best define the observed differences in 109 Cd AE by M. trossulus

Influence of food quality and salinity on dietary cadmium availability in Mytilus trossulus

Energy Technology Data Exchange (ETDEWEB)

Widmeyer, Joline R. [Simon Fraser University, Department of Biological Sciences, Burnaby, British Columbia, V5A 1S6 (Canada)]. E-mail: joline_widmeyer@alumni.sfu.ca; Bendell-Young, Leah I. [Simon Fraser University, Department of Biological Sciences, Burnaby, British Columbia, V5A 1S6 (Canada)

2007-02-28

Surficial sediments (a combination of re-suspended and suspended sediments denoted as RSS) were collected from two distinct marine intertidal habitats. The two habitats differed with respect to salinity (25 ppt versus 15 ppt) and RSS % organic carbon content (24% versus 15%). Feeding experiments were conducted simulating the conditions in the two habitats to determine if salinity and RSS % organic carbon content affected cadmium accumulation in the pacific blue mussel Mytilus trossulus. Eleven different treatments including pure phytoplankton, collected RSS and control clay were radiolabeled with {sup 109}Cd and pulse-fed to M. trossulus under both high (25 ppt) and low salinities (15 ppt). Metal uptake and accumulation was determined using the DYMBAM biodynamic metal bioaccumulation model. Although M. trossulus ingestion rates (IR) were significantly higher at 25 ppt as compared to 15 ppt, assimilation efficiencies (AEs) and [{sup 109}Cd] tissue levels were significantly lower at high as compared to low salinity exposures. Of the abiotic and biotic parameters examined and in contrast to other studies, differences in salinity rather than ingestion rate or food quality (as defined by % organic carbon content) seemed to best define the observed differences in {sup 109}Cd AE by M. trossulus.

A hydrous Ca-bearing magnesium carbonate from playa lake sediments, Salines Lake, Spain

Science.gov (United States)

Queralt, I.; Julia, R.; Plana, F.; Bischoff, J.L.

1997-01-01

Sediments of playa Lake Salines, SE, Spain, contain a carbonate mineral characterized by X-ray diffraction peaks very similar to, but systematically shifted from those of pure magnesite. Analyses (SEM, IR and Raman spectroscopy, DTA, TGA, and ICP) indicate the mineral is a hydrous Ca-bearing magnesium carbonate with the chemical formula (Mg0.92,Ca0.08)CO3??3H2O. Thermal characteristics of the mineral are similar to those of other known hydrated magnesium carbonates. X-ray and electron diffraction data suggests a monoclinic system (P21/n space group) with unit-cell parameters of a = 6.063(6), b = 10.668(5), and c = 6.014(4) A?? and ?? = 107.28??.

The Development of 3d Sub-Surface Mapping Scheme and its Application to Martian Lobate Debris Aprons

Science.gov (United States)

Baik, H.; Kim, J.

2017-07-01

The Shallow Subsurface Radar (SHARAD), a sounding radar equipped on the Mars Reconnaissance Orbiter (MRO), has produced highly valuable information about the Martian subsurface. In particular, the complicated substructures of Mars such as polar deposit, pedestal crater and the other geomorphic features involving possible subsurface ice body has been successfully investigated by SHARAD. In this study, we established a 3D subsurface mapping strategy employing the multiple SHARAD profiles. A number of interpretation components of SHARAD signals were integrated into a subsurface mapping scheme using radargram information and topographic data, then applied over a few mid latitude Lobate Debris Aprons (LDAs). From the identified subsurface layers of LDA, and the GIS data base incorporating the other interpretation outcomes, we are expecting to trace the origin of LDAs. Also, the subsurface mapping scheme developed in this study will be further applied to other interesting Martian geological features such as inter crater structures, aeolian deposits and fluvial sediments. To achieve higher precision sub-surface mapping, the clutter simulation employing the high resolution topographic data and the upgraded clustering algorithms assuming multiple sub-surface layers will be also developed.

The formation of a subsurface anticyclonic eddy in the Peru-Chile Undercurrent and its impact on the near-coastal salinity, oxygen, and nutrient distributions

Science.gov (United States)

Thomsen, Soeren; Kanzow, Torsten; Krahmann, Gerd; Greatbatch, Richard J.; Dengler, Marcus; Lavik, Gaute

2016-01-01

The formation of a subsurface anticyclonic eddy in the Peru-Chile Undercurrent (PCUC) in January and February 2013 is investigated using a multiplatform four-dimensional observational approach. Research vessel, multiple glider, and mooring-based measurements were conducted in the Peruvian upwelling regime near 12°30'S. The data set consists of >10,000 glider profiles and repeated vessel-based hydrography and velocity transects. It allows a detailed description of the eddy formation and its impact on the near-coastal salinity, oxygen, and nutrient distributions. In early January, a strong PCUC with maximum poleward velocities of ˜0.25 m/s at 100-200 m depth was observed. Starting on 20 January, a subsurface anticyclonic eddy developed in the PCUC downstream of a topographic bend, suggesting flow separation as the eddy formation mechanism. The eddy core waters exhibited oxygen concentration of deficit of ˜17 μmol/L, and potential vorticity close to zero, which seemed to originate from the bottom boundary layer of the continental slope. The eddy-induced across-shelf velocities resulted in an elevated exchange of water masses between the upper continental slope and the open ocean. Small-scale salinity and oxygen structures were formed by along-isopycnal stirring, and indications of eddy-driven oxygen ventilation of the upper oxygen minimum zone were observed. It is concluded that mesoscale stirring of solutes and the offshore transport of eddy core properties could provide an important coastal open ocean exchange mechanism with potentially large implications for nutrient budgets and biogeochemical cycling in the oxygen minimum zone off Peru.

Tidal and meteorological forcing of sediment transport in tributary mudflat channels.

Science.gov (United States)

Ralston, David K; Stacey, Mark T

2007-06-01

Field observations of flow and sediment transport in a tributary channel through intertidal mudflats indicate that suspended sediment was closely linked to advection and dispersion of a tidal salinity front. During calm weather when tidal forcing was dominant, high concentrations of suspended sediment advected up the mudflat channel in the narrow region between salty water from San Francisco Bay and much fresher runoff from the small local watershed. Salinity and suspended sediment dispersed at similar rates through each tidal inundation, such that during receding ebbs the sediment pulse had spread spatially and maximum concentrations had decreased. Net sediment transport was moderately onshore during the calm weather, as asymmetries in stratification due to tidal straining of the salinity front enhanced deposition, particularly during weaker neap tidal forcing. Sediment transport by tidal forcing was periodically altered by winter storms. During storms, strong winds from the south generated wind waves and temporarily increased suspended sediment concentrations. Increased discharge down the tributary channels due to precipitation had more lasting impact on sediment transport, supplying both buoyancy and fine sediment to the system. Net sediment transport depended on the balance between calm weather tidal forcing and perturbations by episodic storms. Net transport in the tributary channel was generally off-shore during storms and during calm weather spring tides, and on-shore during calm weather neap tides.

Varying Inundation Regimes Differentially Affect Natural and Sand-Amended Marsh Sediments.

Directory of Open Access Journals (Sweden)

C Wigand

Full Text Available Climate change is altering sea level rise rates and precipitation patterns worldwide. Coastal wetlands are vulnerable to these changes. System responses to stressors are important for resource managers and environmental stewards to understand in order to best manage them. Thin layer sand or sediment application to drowning and eroding marshes is one approach to build elevation and resilience. The above- and below-ground structure, soil carbon dioxide emissions, and pore water constituents in vegetated natural marsh sediments and sand-amended sediments were examined at varying inundation regimes between mean sea level and mean high water (0.82 m NAVD88 to 1.49 m NAVD88 in a field experiment at Laws Point, part of the Plum Island Sound Estuary (MA. Significantly lower salinities, pH, sulfides, phosphates, and ammonium were measured in the sand-amended sediments than in the natural sediments. In natural sediments there was a pattern of increasing salinity with increasing elevation while in the sand-amended sediments the trend was reversed, showing decreasing salinity with increasing elevation. Sulfide concentrations generally increased from low to high inundation with highest concentrations at the highest inundation (i.e., at the lowest elevations. High pore water phosphate concentrations were measured at low elevations in the natural sediments, but the sand-amended treatments had mostly low concentrations of phosphate and no consistent pattern with elevation. At the end of the experiment the lowest elevations generally had the highest measures of pore water ammonium. Soil carbon dioxide emissions were greatest in the sand-amended mesocosms and at higher elevations. Differences in coarse root and rhizome abundances and volumes among the sediment treatments were detected with CT imaging, but by 20 weeks the natural and sand-amended treatments showed similar total belowground biomass at the intermediate and high elevations. Although differences in

Manganese cycling and its implication on methane related processes in the Andaman continental slope sediments

Digital Repository Service at National Institute of Oceanography (India)

Sujith, P.P.; Gonsalves, M.J.B.D.; Rajkumar, V.; Sheba, M.

In the deep subsurface sediments of the Andaman continental slope, in situ methane generation/oxidation could be coupled to the cycling of Mn, as the fluid flow characterized by high methane and Mn could occur in accretionary wedge sediments...

Water masses in the Humboldt Current System: Properties, distribution, and the nitrate deficit as a chemical water mass tracer for Equatorial Subsurface Water off Chile

Science.gov (United States)

Silva, Nelson; Rojas, Nora; Fedele, Aldo

2009-07-01

Three sections are used to analyze the physical and chemical characteristics of the water masses in the eastern South Pacific and their distributions. Oceanographic data were taken from the SCORPIO (May-June 1967), PIQUERO (May-June 1969), and KRILL (June 1974) cruises. Vertical sections of temperature, salinity, σ θ, dissolved oxygen, nitrate, nitrite, phosphate, and silicate were used to analyze the water column structure. Five water masses were identified in the zone through T- S diagrams: Subantarctic Water, Subtropical Water, Equatorial Subsurface Water, Antarctic Intermediate Water, and Pacific Deep Water. Their proportions in the sea water mixture are calculated using the mixing triangle method. Vertical sections were used to describe the geographical distributions of the water mass cores in the upper 1500 m. Several characteristic oceanographic features in the study area were analyzed: the shallow salinity minimum displacement towards the equator, the equatorial subsurface salinity maximum associated with a dissolved oxygen minimum zone and a high nutrient content displacement towards the south, and the equatorward intermediate Antarctic salinity minimum associated with a dissolved oxygen maximum. The nitrate deficit generated in the denitrification area off Peru and northern Chile is proposed as a conservative chemical tracer for the Equatorial Subsurface Waters off the coast of Chile, south of 25°S.

Energy Gradients Structure Microbial Communities Across Sediment Horizons in Deep Marine Sediments of the South China Sea

Science.gov (United States)

Graw, Michael F.; D'Angelo, Grace; Borchers, Matthew; Thurber, Andrew R.; Johnson, Joel E.; Zhang, Chuanlun; Liu, Haodong; Colwell, Frederick S.

2018-01-01

The deep marine subsurface is a heterogeneous environment in which the assembly of microbial communities is thought to be controlled by a combination of organic matter deposition, electron acceptor availability, and sedimentology. However, the relative importance of these factors in structuring microbial communities in marine sediments remains unclear. The South China Sea (SCS) experiences significant variability in sedimentation across the basin and features discrete changes in sedimentology as a result of episodic deposition of turbidites and volcanic ashes within lithogenic clays and siliceous or calcareous ooze deposits throughout the basin's history. Deep subsurface microbial communities were recently sampled by the International Ocean Discovery Program (IODP) at three locations in the SCS with sedimentation rates of 5, 12, and 20 cm per thousand years. Here, we used Illumina sequencing of the 16S ribosomal RNA gene to characterize deep subsurface microbial communities from distinct sediment types at these sites. Communities across all sites were dominated by several poorly characterized taxa implicated in organic matter degradation, including Atribacteria, Dehalococcoidia, and Aerophobetes. Sulfate-reducing bacteria comprised only 4% of the community across sulfate-bearing sediments from multiple cores and did not change in abundance in sediments from the methanogenic zone at the site with the lowest sedimentation rate. Microbial communities were significantly structured by sediment age and the availability of sulfate as an electron acceptor in pore waters. However, microbial communities demonstrated no partitioning based on the sediment type they inhabited. These results indicate that microbial communities in the SCS are structured by the availability of electron donors and acceptors rather than sedimentological characteristics. PMID:29696012

Unwinding after high salinity stress: Pea DNA helicase 45 over- expression in tobacco confers high salinity tolerance without affecting yield (abstract)

International Nuclear Information System (INIS)

Tuteja, N.

2005-01-01

Soil salinity is an increasing threat for agriculture and is a major factor in reducing plant productivity; therefore, it is necessary to obtain salinity-tolerant varieties. A typical characteristic of soil salinity is the induction of multiple stress- inducible genes. Some of the genes encoding osmolytes, ion channels or enzymes are able to confer salinity-tolerant phenotypes when transferred to sensitive plants. As salinity stress affects the cellular gene-expression machinery, it is evident that molecules involved in nucleic acid processing including helicases, are likely to be affected as well. DNA helicases unwind duplex DNA and are involved in replication, repair, recombination and transcription while RNA helicases unfold the secondary structures in RNA and are involved in transcription, ribosome biogenesis and translation initiation. We have earlier reported the isolation of a pea DNA helicase 45 (PDH45) that exhibits striking homology with eIF-4A (Plant J. 24:219-230,2000). Here we report that PDH45 mRNA is induced in pea seedlings in response to high salt and its over- expression driven by a constitutive CAMV-355-promoter in tobacco plants confers salinity tolerance, thus suggesting a new pathway for manipulating stress tolerance in crop plants. The T0 transgenic plants showed high-levels of PDH45 protein in normal and stress conditions, as compared to wild type (WT) plants. The T0 transgenics also showed tolerance to high salinity as tested by a leaf disc senescence assay. The T1 transgenics were able to grow to maturity and set normal viable seeds under continuous salinity stress, without any reduction in plant yield, in terms of seed weight. Measurement of Na/sup +/ ions in different parts of the plant showed higher accumulation in the old leaves and negligible in seeds of T1 transgenic lines as compared with the WT plants. The possible mechanism of salinity tolerance will be discussed. Over-expression of PDH45 provides a possible example of the

Targeting sediment management strategies using sediment quantification and fingerprinting methods

Science.gov (United States)

Sherriff, Sophie; Rowan, John; Fenton, Owen; Jordan, Phil; hUallacháin, Daire Ó.

2016-04-01

Cost-effective sediment management is required to reduce excessive delivery of fine sediment due to intensive land uses such as agriculture, resulting in the degradation of aquatic ecosystems. Prioritising measures to mitigate dominant sediment sources is, however, challenging, as sediment loss risk is spatially and temporally variable between and within catchments. Fluctuations in sediment supply from potential sources result from variations in land uses resulting in increased erodibility where ground cover is low (e.g., cultivated, poached and compacted soils), and physical catchment characteristics controlling hydrological connectivity and transport pathways (surface and/or sub-surface). Sediment fingerprinting is an evidence-based management tool to identify sources of in-stream sediments at the catchment scale. Potential sediment sources are related to a river sediment sample, comprising a mixture of source sediments, using natural physico-chemical characteristics (or 'tracers'), and contributions are statistically un-mixed. Suspended sediment data were collected over two years at the outlet of three intensive agricultural catchments (approximately 10 km2) in Ireland. Dominant catchment characteristics were grassland on poorly-drained soils, arable on well-drained soils and arable on moderately-drained soils. High-resolution (10-min) calibrated turbidity-based suspended sediment and discharge data were combined to quantify yield. In-stream sediment samples (for fingerprinting analysis) were collected at six to twelve week intervals, using time-integrated sediment samplers. Potential sources, including stream channel banks, ditches, arable and grassland field topsoils, damaged road verges and tracks were sampled, oven-dried (account for particle size and organic matter selectivity processes. Contributions from potential sources type groups (channel - ditches and stream banks, roads - road verges and tracks, fields - grassland and arable topsoils) were

Evolution Dynamics of Relief and Sediment Structures During the Initial Phase of Ecosystem Evolution Within an Experimentally Constructed Catchment Landscape and Their Influence on the Shallow Subsurface

Science.gov (United States)

Huerkamp, K.; Voelkel, J.; Leopold, M.; Roeder, J.; Winkelbauer, J.

2008-12-01

The studies are integrated in a project of the Collaborative Research Center of the German Research Foundation (DFG SFB-TRR 38) 'Structures and processes of the initial ecosystem development phase in an artificial water catchment'. The experimental catchment 'Hühnerwasser' is built up by mechanically deposited sediments reconstructing an initially emerged landscape. In order to monitor its geomorphological as well as ecofunctional evolution with time it is essential to incorporate comprehensive geophysical applications dealing with geomorphology and sedimentology of both surface as well as shallow subsurface. Digital terrain modelling on meso- to microscale is employed to reflect and analyze superficial processes and evolution trends as well as their influence on the abiotic and biotic structures and processes of the succeeding ecosystem. Especially in the case of the portrayal and analysis of subsurface characteristics, strategy needs to adapt to the special requirements of the SFB-project as the catchment system should only underlie 'natural' conditions and therefore not be altered by any implementations in the course of field investigation. Consequently, intrusive methods such as drillings or profiles are to be omitted. Methods of geophysical prospection hence constitute an indispensable tool in investigation of subsurface composition. Ground penetrating radar (GPR) and electric resistivity tomography (ERT) are applied with adequate resolution to detect the primary deposition structures within the technogenically bedded sediment. By means of this evaluation subsurface structures can be interpreted with regards to their relevance in controlling soil water movement, slope hydrology, redox interactions, root distribution etc. Furthermore, alterations of these primary structures resulting from bio- and pedoturbation processes can be monitored.

Porosity and Organic Carbon Controls on Naturally Reduced Zone (NRZ) Formation Creating Microbial ';Hotspots' for Fe, S, and U Cycling in Subsurface Sediments

Science.gov (United States)

Jones, M. E.; Janot, N.; Bargar, J.; Fendorf, S. E.

2013-12-01

Previous studies have illustrated the importance of Naturally Reduced Zones (NRZs) within saturated sediments for the cycling of metals and redox sensitive contaminants. NRZs can provide a source of reducing equivalents such as reduced organic compounds or hydrogen to stimulate subsurface microbial communities. These NRZ's are typically characterized by low permeability and elevated concentrations of organic carbon and trace metals. However, both the formation of NRZs and their importance to the overall aquifer carbon remineralization is not fully understood. Within NRZs the hydrolysis of particulate organic carbon (POC) and subsequent fermentation of dissolved organic carbon (DOC) to form low molecular weight dissolved organic carbon (LMW-DOC) provides electron donors necessary for the respiration of Fe, S, and in the case of the Rifle aquifer, U. Rates of POC hydrolysis and subsequent fermentation have been poorly constrained and rates in excess and deficit to the rates of subsurface anaerobic respiratory processes have been suggested. In this study, we simulate the development of NRZ sediments in diffusion-limited aggregates to investigate the physical and chemical conditions required for NRZ formation. Effects of sediment porosity and POC loading on Fe, S, and U cycling on molecular and nanoscale are investigated with synchrotron-based Near Edge X-ray Absorption Fine Structure Spectroscopy (NEXAFS). Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FT-ICR-MS) and Fourier Transform Infrared spectroscopy (FTIR) are used to characterize the transformations in POC and DOC. Sediment aggregates are inoculated with the natural microbial biota from the Rifle aquifer and population dynamics are monitored by 16S RNA analysis. Overall, establishment of low permeability NRZs within the aquifer stimulate microbial respiration beyond the diffusion-limited zones and can limit the transport of U through a contaminated aquifer. However, the long-term stability of

Estimating sedimentation rates and sources in a partially urbanized catchment using caesium-137

Science.gov (United States)

Ormerod, L. M.

1998-06-01

While there has been increased interest in determining sedimentation rates and sources in agricultural and forested catchments in recent years, there have been few studies dealing with urbanized catchments. A study of sedimentation rates and sources within channel and floodplain deposits of a partially urbanized catchment has been undertaken using the 137Cs technique. Results for sedimentation rates showed no particular downstream pattern. This may be partially explained by underestimation of sedimentation rates at some sites by failure to sample the full 137Cs profile, floodplain erosion and deliberate removal of sediment. Evidence of lateral increases in net sedimentation rates with distance from the channel may be explained by increased floodplain erosion at sites closer to the channel and floodplain formation by lateral deposition. Potential sediment sources for the catchment were considered to be forest topsoil, subsurface material and sediments derived from urban areas, which were found to be predominantly subsurface material. Tracing techniques showed an increase in subsurface material for downstream sites, confirming expectations that subsurface material would increase in the downstream direction in response to the direct and indirect effects of urbanization.

Uranium and Cesium sorption to bentonite colloids in high salinity and carbonate-rich environments: Implications for radionuclide transport

Science.gov (United States)

Tran, E. L.; Teutsch, N.; Klein-BenDavid, O.; Weisbrod, N.

2017-12-01

When radionuclides are leaked into the subsurface due to engineered waste disposal container failure, the ultimate barrier to migration of radionuclides into local aquifers is sorption to the surrounding rock matrix and sediments, which often includes a bentonite backfill. The extent of this sorption is dependent on pH, ionic strength, surface area availability, radionuclide concentration, surface mineral composition, and solution chemistry. Colloidal-sized bentonite particles eroded from the backfill have been shown to facilitate the transport of radionuclides sorbed to them away from their source. Thus, sorption of radionuclides such as uranium and cesium to bentonite surfaces can be both a mobilization or retardation factor. Though numerous studies have been conducted to-date on sorption of radionuclides under low ionic strength and carbonate-poor conditions, there has been little research conducted on the behavior of radionuclides in high salinities and carbonate rich conditions typical of aquifers in the vicinity of some potential nuclear repositories. This study attempts to characterize the sorption properties of U(VI) and Cs to bentonite colloids under these conditions using controlled batch experiments. Results indicated that U(VI) undergoes little to no sorption to bentonite colloids in a high-salinity (TDS= 9000 mg/L) artificial groundwater. This lack of sorption was attributed to the formation of CaUO2(CO3)22- and Ca2UO2(CO3)3 aqueous ions which stabilize the UO22+ ions in solution. In contrast, Cs exhibited greater sorption, the extent to which was influenced greatly by the matrix water's ionic strength and the colloid concentration used. Surprisingly, when both U and Cs were together, the presence of U(VI) in solution decreased Cs sorption, possibly due to the formation of stabilizing CaUO2(CO3)22- anions. The implications of this research are that rather than undergoing colloid-facilitated transport, U(VI) is expected to migrate similarly to a

Increase of urban lake salinity by road deicing salt

International Nuclear Information System (INIS)

Novotny, Eric V.; Murphy, Dan; Stefan, Heinz G.

2008-01-01

Over 317,000 tonnes of road salt (NaCl) are applied annually for road deicing in the Twin Cities Metropolitan Area (TCMA) of Minnesota. Although road salt is applied to increase driving safety, this practice influences environmental water quality. Thirteen lakes in the TCMA were studied over 46 months to determine if and how they respond to the seasonal applications of road salt. Sodium and chloride concentrations in these lakes were 10 and 25 times higher, respectively, than in other non-urban lakes in the region. Seasonal salinity/chloride cycles in the lakes were correlated with road salt applications: High concentrations in the winter and spring, especially near the bottom of the lakes, were followed by lower concentrations in the summer and fall due to flushing of the lakes by rainfall runoff. The seasonal salt storage/flushing rates for individual lakes were derived from volume-weighted average chloride concentration time series. The rate ranged from 9 to 55% of a lake's minimum salt content. In some of the lakes studied salt concentrations were high enough to stop spring turnover preventing oxygen from reaching the benthic sediments. Concentrations above the sediments were also high enough to induce convective mixing of the saline water into the sediment pore water. A regional analysis of historical water quality records of 38 lakes in the TCMA showed increases in lake salinity from 1984 to 2005 that were highly correlated with the amount of rock salt purchased by the State of Minnesota. Chloride concentrations in individual lakes were positively correlated with the percent of impervious surfaces in the watershed and inversely with lake volume. Taken together, the results show a continuing degradation of the water quality of urban lakes due to application of NaCl in their watersheds

Water and suspended sediment dynamics in the Sungai Selangor estuary

International Nuclear Information System (INIS)

Abdul Kadir Ishak; Kamarudin Samuding; Nazrul Hizam Yusoff

2000-01-01

Observations of salinity, temperature, suspended sediment concentration (SSC) and tidal current velocity were made in the lower and along the longitudinal axis sungai Selangor estuary over near-spring cycles. The variations of these parameters at the measurement stations and along the channel are presented to illustrate the water and sediment dynamics in the estuary. The results shows that the Sungai Selangor estuary changes from a partially-mixed type during neaps to a well-mixed one during springs. promoted by stronger tidal energy during the higher tidal ranges. The strong neap density stratification is also promoted by the high river discharges during the measurement period maximum concentration of suspended sediment 2000 mg,'/) occurs during maximum current velocities both during flood and ebb. The maximum salinity was achieved during high water slack but the salt water was totally flushed out of estuary during low water springs. The longitudinal axis measurement indicates that a partially-developed zone of turbidity maximum with a sediment concentration over 1000 mg/l was observed at the limit of salt water intrusion in salinity range less than 1 ppt. Tidal pumping as oppose to the estuarine circulation is the more dominant factor in the maximum formation as the salt water is totally excluded at low water. (author)

Fate of Brine Applied to Unpaved Roads at a Radioactive Waste Subsurface Disposal Area

International Nuclear Information System (INIS)

Larry C. Hull; Carolyn W. Bishop

2004-01-01

Between 1984 and 1993, MgCl 2 brine was used to suppress dust on unpaved roads at a radioactive waste subsurface disposal area. Because Cl - might enhance corrosion of buried metals in the waste, we investigated the distribution and fate of Cl - in the vadose zone using pore water samples collected from suction lysimeters and soluble salt concentrations extracted from sediment samples. The Cl/Br mass ratio and the total dissolved Cl - concentration of pore water show that brine contamination occurs primarily within 13 m of treated roads, but can extend as much as 30 m laterally in near-surface sedimentary deposits. Within the deep vadose zone, which consists of interlayered basalt lava flows and sedimentary interbeds, brine has moved up to 110 m laterally. This lateral migration suggests formation of perched water and horizontal transport during periods of high recharge. In a few locations, brine migrated to depths of 67 m within 3 to 5 yr. Elevated Cl - concentrations were found to depths of 2 m in roadbed material. In drainage ditches along roads, where runoff accumulates and recharge of surface water is high, Cl - was flushed from the sediments in 3 to 4 yr. In areas of lower recharge, Cl - remained in the sediments after 5 yr. Vertical brine movement is directly related to surface recharge through sediments. The distribution of Cl - in pore water and sediments is consistent with estimates of vadose zone residence times and spatial distribution of surface water recharge from other investigations at the subsurface disposal area

Mathematical simulation of sediment and radionuclide transport in estuaries

International Nuclear Information System (INIS)

Onishi, Y.; Trent, D.S.

1982-11-01

The finite element model LFESCOT (Flow, Energy, Salinity, Sediment and Contaminant Transport Model) was synthesized under this study to simulate radionuclide transport in estuaries to obtain accurate radionuclide distributions which are affected by these factors: time variance, three-dimensional flow, temperature, salinity, and sediments. Because sediment transport and radionuclide adsorption/desorption depend strongly on sizes or types of sediments, FLESCOT simulates sediment and a sediment-sorbed radionuclide for the total of three sediment-size fractions (or sediment types) of both cohesive and noncohesive sediments. It also calculates changes of estuarine bed conditions, including bed elevation changes due to sediment erosion/deposition, and three-dimensional distributions of three bed sediment sizes and sediment-sorbed radionuclides within the bed. Although the model was synthesized for radionuclide transport, it is general enough to also handle other contaminants such as heavy metals, pesticides, or toxic chemicals. The model was checked for its capability for flow, water surface elevation change, salinity, sediment and radionuclide transport under various simple conditions first, confirming the general validity of the model's computational schemes. These tests also revealed that FLESCOT can use large aspect ratios of computational cells, which are necessary in handling long estuarine study areas. After these simple tests, FLESCOT was applied to the Hudson River estuary between Chelsea and the mouth of the river to examine how well the model can predict radionuclide transport through simulating tidally influenced three-dimensional flow, salinity, sediment and radionuclide movements with their interactions

Temperature and pressure adaptation of a sulfate reducer from the deep subsurface

Directory of Open Access Journals (Sweden)

Katja eFichtel

2015-10-01

Full Text Available Microbial life in deep marine subsurface faces increasing temperatures and hydrostatic pressure with depth. In this study, we have examined growth characteristics and temperature-related adaptation of the Desulfovibrio indonesiensis strain P23 to the in situ pressure of 30 MPa. The strain originates from the deep subsurface of the eastern flank of the Juan de Fuca Ridge (IODP Site U1301. The organism was isolated at 20 °C and atmospheric pressure from ~61 °C-warm sediments approximately five meters above the sediment-basement interface. In comparison to standard laboratory conditions (20 °C and 0.1 MPa, faster growth was recorded when incubated at in situ pressure and high temperature (45 °C, while cell filamentation was induced by further compression. The maximum growth temperature shifted from 48°C at atmospheric pressure to 50°C under high-pressure conditions. Complementary cellular lipid analyses revealed a two-step response of membrane viscosity to increasing temperature with an exchange of unsaturated by saturated fatty acids and subsequent change from branched to unbranched alkyl moieties. While temperature had a stronger effect on the degree of fatty acid saturation and restructuring of main phospholipids, pressure mainly affected branching and length of side chains. The simultaneous decrease of temperature and pressure to ambient laboratory conditions allowed the cultivation of our moderately thermophilic strain. This may in turn be one key to a successful isolation of microorganisms from the deep subsurface adapted to high temperature and pressure.

Energy Gradients Structure Microbial Communities Across Sediment Horizons in Deep Marine Sediments of the South China Sea

Directory of Open Access Journals (Sweden)

Michael F. Graw

2018-04-01

Full Text Available The deep marine subsurface is a heterogeneous environment in which the assembly of microbial communities is thought to be controlled by a combination of organic matter deposition, electron acceptor availability, and sedimentology. However, the relative importance of these factors in structuring microbial communities in marine sediments remains unclear. The South China Sea (SCS experiences significant variability in sedimentation across the basin and features discrete changes in sedimentology as a result of episodic deposition of turbidites and volcanic ashes within lithogenic clays and siliceous or calcareous ooze deposits throughout the basin's history. Deep subsurface microbial communities were recently sampled by the International Ocean Discovery Program (IODP at three locations in the SCS with sedimentation rates of 5, 12, and 20 cm per thousand years. Here, we used Illumina sequencing of the 16S ribosomal RNA gene to characterize deep subsurface microbial communities from distinct sediment types at these sites. Communities across all sites were dominated by several poorly characterized taxa implicated in organic matter degradation, including Atribacteria, Dehalococcoidia, and Aerophobetes. Sulfate-reducing bacteria comprised only 4% of the community across sulfate-bearing sediments from multiple cores and did not change in abundance in sediments from the methanogenic zone at the site with the lowest sedimentation rate. Microbial communities were significantly structured by sediment age and the availability of sulfate as an electron acceptor in pore waters. However, microbial communities demonstrated no partitioning based on the sediment type they inhabited. These results indicate that microbial communities in the SCS are structured by the availability of electron donors and acceptors rather than sedimentological characteristics.

Physico-chemical and Mineralogical Characterisation of Subsurface ...

African Journals Online (AJOL)

Studies were carried out on subsurface sediments obtained around the Gaborone landfill area Botswana, in order to characterize their mineralogy and physico-chemistry, appraise any contaminant inputs from the landfill and assess their ability to attenuate contaminants from the landfill. Physico-chemical properties ...

Effects of nitrate on the stability of uranium in a bioreduced region of the subsurface

International Nuclear Information System (INIS)

Wu, Weimin; Carley, Jack M.; Green, Stefan; Luo, Jian; Kelly, Shelly D.; Van Nostrand, Joy; Lowe, Kenneth Alan; Mehlhorn, Tonia L.; Carroll, Sue L.; Boonchayanant, Benjaporn; Loeffler, Frank E.; Jardine, Philip M.; Criddle, Craig

2010-01-01

The effects of nitrate on the stability of reduced, immobilized uranium were evaluated in field experiments at a U.S. Department of Energy site in Oak Ridge, TN. Nitrate (2.0 mM) was injected into a reduced region of the subsurface containing high levels of previously immobilized U(IV). The nitrate was reduced to nitrite, ammonium, and nitrogen gas; sulfide levels decreased; and Fe(II) levels increased then deceased. Uranium remobilization occurred concomitant with nitrite formation, suggesting nitrate-dependent, iron-accelerated oxidation of U(IV). Bromide tracer results indicated changes in subsurface flowpaths likely due to gas formation and/or precipitate. Desorption-adsorption of uranium by the iron-rich sediment impacted uranium mobilization and sequestration. After rereduction of the subsurface through ethanol additions, background groundwater containing high levels of nitrate was allowed to enter the reduced test zone. Aqueous uranium concentrations increased then decreased. Clone library analyses of sediment samples revealed the presence of denitrifying bacteria that can oxidize elemental sulfur, H 2 S, Fe(II), and U(IV) (e.g., Thiobacillus spp.), and a decrease in relative abundance of bacteria that can reduce Fe(III) and sulfate. XANES analyses of sediment samples confirmed changes in uranium oxidation state. Addition of ethanol restored reduced conditions and triggered a short-term increase in Fe(II) and aqueous uranium, likely due to reductive dissolution of Fe(III) oxides and release of sorbed U(VI). After two months of intermittent ethanol addition, sulfide levels increased, and aqueous uranium concentrations gradually decreased to <0.1 μM.

Geomicrobiology of High Level Nuclear Waste-Contaminated Vadose Sediments at the Hanford Site, Washington State

International Nuclear Information System (INIS)

Fredrickson, Jim K.; Zachara, John M.; Balkwill, David L.; Kennedy, David W.; Li, Shu-Mei W.; Kostandarithes, Heather M.; Daly, Michael J.; Romine, Margaret F.; Brockman, Fred J.

2004-01-01

Sediments from a high-level nuclear waste plume were collected as part of investigations to evaluate the potential fate and migration of contaminants in the subsurface. The plume originated from a leak that occurred in 1962 from a waste tank consisting of high concentrations of alkali, nitrate, aluminate, Cr(VI), 137Cs, and 99Tc. Investigations were initiated to determine the distribution of viable microorganisms in the vadose sediment samples, probe the phylogeny of cultivated and uncultivated members, and evaluate the ability of the cultivated organisms to survive acute doses of ionizing radiation. The populations of viable aerobic heterotrophic bacteria were generally low, from below detection to ∼104 7 CFU g-1 but viable microorganisms were recovered from 11 of 16 samples including several of the most radioactive ones (e.g., > 10 ?Ci/g 137Cs). The isolates from the contaminated sediments and clone libraries from sediment DNA extracts were dominated by members related to known Gram-positive bacteria. Gram-positive bacteria most closely related to Arthrobacter species were the most common isolates among all samples but other high G+C phyla were also represented including Rhodococcus and Nocardia. Two isolates from the second most radioactive sample (>20 ?Ci 137Cs g-1) were closely related to Deinococcus radiodurans and were able to survive acute doses of ionizing radiation approaching 20kGy. Many of the Gram-positive isolates were resistant to lower levels of gamma radiation. These results demonstrate that Gram-positive bacteria, predominantly high G+C phyla, are indigenous to Hanford vadose sediments and some are effective at surviving the extreme physical and chemical stress associated with radioactive waste

High salinity facilitates dolomite precipitation mediated by Haloferax volcanii DS52

Science.gov (United States)

Qiu, Xuan; Wang, Hongmei; Yao, Yanchen; Duan, Yong

2017-08-01

Although most modern dolomites occur in hypersaline environments, the effects of elevated salinity on the microbial mediation of dolomite precipitation have not been fully evaluated. Here we report results of dolomite precipitation in association with a batch culture of Haloferax volcanii DS52, a halophilic archaeon, under various salinities (from 120‰ to 360‰) and the impact of salinity on microbe-mediated dolomite formation. The mineral phases, morphology and atomic arrangement of the precipitates were analyzed by XRD, SEM and TEM, respectively. The amount of amino acids on the archaeal cell surface was quantified by HPLC/MS. The XRD analysis indicated that disordered dolomite formed successfully with the facilitation of cells harvested from cultures with relatively high salinities (200‰ and 280‰) but was not observed in association with cells harvested from cultures with lower salinity (120‰) or the lysates of cells harvested from extremely high salinity (360‰). The TEM analysis demonstrated that the crystals from cultures with a salinity of 200‰ closely matched that of dolomite. Importantly, we found that more carboxyl groups were presented on the cell surface under high salinity conditions to resist the high osmotic pressure, which may result in the subsequent promotion of dolomite formation. Our finding suggests a link between variations in the hydro-chemical conditions and the formation of dolomite via microbial metabolic activity and enhances our understanding about the mechanism of microbially mediated dolomite formation under high salinity conditions.

Salinization and Saline Environments

Science.gov (United States)

Vengosh, A.

2003-12-01

One of the most conspicuous phenomena of water-quality degradation, particularly in arid and semi-arid zones, is salinization of water and soil resources. Salinization is a long-term phenomenon, and during the last century many aquifers and river basins have become unsuitable for human consumption owing to high levels of salinity. Future exploitation of thousands of wells in the Middle East and in many other water-scarce regions in the world depends, to a large extent, on the degree and rate of salinization. Moreover, every year a large fraction of agricultural land is salinized and becomes unusable.Salinization is a global environmental phenomenon that affects many different aspects of our life (Williams, 2001a, b): changing the chemical composition of natural water resources (lakes, rivers, and groundwater), degrading the quality of water supply to the domestic and agriculture sectors, contribution to loss of biodiversity, taxonomic replacement by halotolerant species ( Williams, 2001a, b), loss of fertile soil, collapse of agricultural and fishery industries, changing of local climatic conditions, and creating severe health problems (e.g., the Aral Basin). The damage due to salinity in the Colorado River Basin alone, for example, ranges between 500 and 750 million per year and could exceed 1 billion per year if the salinity in the Imperial Dam increases from 700 mg L-1 to 900 mg L-1 (Bureau of Reclamation, 2003, USA). In Australia, accelerating soil salinization has become a massive environmental and economic disaster. Western Australia is "losing an area equal to one football oval an hour" due to spreading salinity ( Murphy, 1999). The annual cost for dryland salinity in Australia is estimated as AU700 million for lost land and AU$130 million for lost production ( Williams et al., 2002). In short, the salinization process has become pervasive.Salinity in water is usually defined by the chloride content (mg L-1) or total dissolved solids content (TDS, mg L-1or g

Geochemical processes controlling water salinization in an irrigated basin in Spain: identification of natural and anthropogenic influence.

Science.gov (United States)

Merchán, D; Auqué, L F; Acero, P; Gimeno, M J; Causapé, J

2015-01-01

Salinization of water bodies represents a significant risk in water systems. The salinization of waters in a small irrigated hydrological basin is studied herein through an integrated hydrogeochemical study including multivariate statistical analyses and geochemical modeling. The study zone has two well differentiated geologic materials: (i) Quaternary sediments of low salinity and high permeability and (ii) Tertiary sediments of high salinity and very low permeability. In this work, soil samples were collected and leaching experiments conducted on them in the laboratory. In addition, water samples were collected from precipitation, irrigation, groundwater, spring and surface waters. The waters show an increase in salinity from precipitation and irrigation water to ground- and, finally, surface water. The enrichment in salinity is related to the dissolution of soluble mineral present mainly in the Tertiary materials. Cation exchange, precipitation of calcite and, probably, incongruent dissolution of dolomite, have been inferred from the hydrochemical data set. Multivariate statistical analysis provided information about the structure of the data, differentiating the group of surface waters from the groundwaters and the salinization from the nitrate pollution processes. The available information was included in geochemical models in which hypothesis of consistency and thermodynamic feasibility were checked. The assessment of the collected information pointed to a natural control on salinization processes in the Lerma Basin with minimal influence of anthropogenic factors. Copyright © 2014 Elsevier B.V. All rights reserved.

Sources of heavy metals in sediments of the Hudson River Estuary

International Nuclear Information System (INIS)

Williams, S.C.; Simpson, H.J.; Olsen, C.R.; Bopp, R.F.

1978-01-01

Sediments in the Hudson Estuary contain zinc, copper and lead from metal pollutants discharged to the harbor in the New York City area, from dispersed sources of contamination introduced upstream, and from natural weathering processes. The magnitude of the contribution from each of these three sources to particular sites can be estimated on the basis of total metal abundances, relative proportions of several metals, and other sediment properties. The pattern of recent heavy-metal contamination in Hudson sediments closely follows the distribution in sediments of 137 Cs which was derived over the past two decades from global fallout and local releases from a commercial nuclear reactor. Several simple empirical corrections related to grain size and mineralogy variations are suggested for comparing heavy-metal contamination levels of sandy continental shelf sediments with fine-grained estuarine and coastal sediments. Iron has little variation in Hudson sediments while manganese is greater in surface sediment of some low-salinity and fresh-water areas than deeper in the sediments, and generally less in the high-salinity area of rapid sediment deposition in New York harbor. Much of the pollutant Cu added to the harbor appears to be rapidly deposited in the sediments. (Auth.)

Study of groundwater salinization in Chaj Doab using environmental isotopes

International Nuclear Information System (INIS)

Hussain, S.D.; Sajjid, M.I.; Akram, W.; Ahmad, M.; Rafiq, M.

1991-09-01

Environmental isotopes and chemical composition of water have been used to study the origin of groundwater salinity in Chaj Doab. Three important possible processes of salinization i.e. enrichment of salt content of water by evaopration, mixing with connate marine water and dissolution of salts from soil sediments have been investigated. No evidence for mixing with connate maine water could be found. The process of evaporation too does not seem to apply any significant role in salinization of groundwater. The dissolution of salts from soil sediments appears as dominant mechanism for increasing the salt content of water in this area. (author)

Geochemical processes controlling water salinization in an irrigated basin in Spain: Identification of natural and anthropogenic influence

Energy Technology Data Exchange (ETDEWEB)

Merchán, D., E-mail: d.merchan@igme.es [Geological Survey of Spain — IGME, C/Manuel Lasala 44 9B, 50006 Zaragoza (Spain); Auqué, L.F.; Acero, P.; Gimeno, M.J. [University of Zaragoza — Department of Earth Sciences (Geochemical Modelling Group), C/Pedro Cerbuna 12, 50009 Zaragoza (Spain); Causapé, J. [Geological Survey of Spain — IGME, C/Manuel Lasala 44 9B, 50006 Zaragoza (Spain)

2015-01-01

Salinization of water bodies represents a significant risk in water systems. The salinization of waters in a small irrigated hydrological basin is studied herein through an integrated hydrogeochemical study including multivariate statistical analyses and geochemical modeling. The study zone has two well differentiated geologic materials: (i) Quaternary sediments of low salinity and high permeability and (ii) Tertiary sediments of high salinity and very low permeability. In this work, soil samples were collected and leaching experiments conducted on them in the laboratory. In addition, water samples were collected from precipitation, irrigation, groundwater, spring and surface waters. The waters show an increase in salinity from precipitation and irrigation water to ground- and, finally, surface water. The enrichment in salinity is related to the dissolution of soluble mineral present mainly in the Tertiary materials. Cation exchange, precipitation of calcite and, probably, incongruent dissolution of dolomite, have been inferred from the hydrochemical data set. Multivariate statistical analysis provided information about the structure of the data, differentiating the group of surface waters from the groundwaters and the salinization from the nitrate pollution processes. The available information was included in geochemical models in which hypothesis of consistency and thermodynamic feasibility were checked. The assessment of the collected information pointed to a natural control on salinization processes in the Lerma Basin with minimal influence of anthropogenic factors. - Highlights: • Salinization in Lerma Basin was controlled by the dissolution of soluble salts. • Water salinization and nitrate pollution were found to be independent processes. • High NO{sub 3}, fresh groundwater evolved to lower NO{sub 3}, higher salinity surface water. • Inverse and direct geochemical modeling confirmed the hypotheses. • Salinization was a natural ongoing process

Sediment-water distribution of perfluorooctane sulfonate (PFOS) in Yangtze River Estuary

International Nuclear Information System (INIS)

Pan Gang; You Chun

2010-01-01

Analysis of Perfluorooctane sulfonate (PFOS) distribution in water and sediment in Yangtze River Estuary showed that the estuary was a sink for PFOS. Salinity was an important parameter in controlling the sediment-water interactions and the fate or transport of PFOS in the aquatic environment. As the salinity (S per mille ) increased from 0.18 to 3.31, the distribution coefficient (K d ) between sediment and water linearly increased from 0.76 to 4.70 L g -1 . The study suggests that PFOS may be carried with the river water and transported for long distances before it reaches to the sea and largely scavenged to the sediment in the estuaries due to the dramatic change in salinity. - PFOS may be largely scavenged to the sediment in estuaries due to the dramatic change in salinity during its transport from lands to oceans.

Geophysical characterization of contaminated muddy sediments

International Nuclear Information System (INIS)

McDermott, I. R.; English, G. E.

1997-01-01

A non-intrusive, seismic subbottom profile survey of pond sediments was conducted on a former U.S.Naval Facility at Argentia, Newfoundland, to characterize the nature and extent of contamination. An IKB Seistec boomer was used in conjunction with C-CORE's HI-DAPT digital data acquisition and processing system and differential GPS system. The survey was successful in locating regions of soft muddy sediments and in determining the thickness of these deposits. Subsurface buried objects, which are potential sources of pollution, were also identified. Intrusive profiling of the sediment was done with a new tool, the Soil Stiffness Probe, which combines two geophysical measurement systems to determine bulk density and shear stiffness. The muddy sediments were found to be highly 'fluidized', indicating that they could be easily removed with a suction dredge. 4 refs., 5 figs

Relating groundwater and sediment chemistry to microbial characterization at a BTEX-contaminated site

International Nuclear Information System (INIS)

Pfiffner, S.M.; Palumbo, A.V.; McCarthy, J.F.; Gibson, T.

1996-01-01

The National Center for Manufacturing Science is investigating bioremediation of petroleum hydrocarbon at a site in Belleville, Michigan. As part of this study we examined the microbial communities to help elucidate biodegradative processes currently active at the site. We observed high densities of aerobic hydrocarbon degraders and denitrifiers in the less-contaminated sediments. Low densities of iron and sulfate reducers were measured in the same sediments. In contrast, the highly-contaminated sediments showed low densities of aerobic hydrocarbon degraders and denitrifiers and high densities of iron and sulfate reducers. Methanogens were also found in these highly-contaminated sediments. These contaminated sediments also showed a higher biomass, by phospholipid fatty acids, and greater ratios of phospholipid fatty acids which indicate stress within the microbial community. Aquifer chemistry analyses indicated that the more-contaminated area was more reduced and had lower sulfate than the less-contaminated area. These conditions suggest that the subsurface environment at the highly-contaminated area had progressed into sulfate reduction and methanogensis. The less-contaminated area, although less reduced, also appeared to be progressing into primarily iron- and sulfate-reducing microbial communities. The proposed treatment to stimulate bioremediation includes addition of oxygen and nitrate. Groundwater chemistry and microbial analyses revealed significant differences resulted from the injection of dissolved oxygen and nitrate in the subsurface. These differences included increases in pH and Eh and large decreases in BTEX, dissolved iron, and sulfate concentrations at the injection well

Electromagnetic exploration in high-salinity groundwater zones: case studies from volcanic and soft sedimentary sites in coastal Japan

Science.gov (United States)

Suzuki, Koichi; Kusano, Yukiko; Ochi, Ryota; Nishiyama, Nariaki; Tokunaga, Tomochika; Tanaka, Kazuhiro

2017-01-01

Estimating the spatial distribution of groundwater salinity in coastal plain regions is becoming increasingly important for site characterisation and the prediction of hydrogeological environmental conditions resulting from radioactive waste disposal and underground CO2 storage. In previous studies of the freshwater-saltwater interface, electromagnetic methods were used for sites characterised by unconsolidated deposits or Neocene soft sedimentary rocks. However, investigating the freshwater-saltwater interface in hard rock sites (e.g. igneous areas) is more complex, with the permeability of the rocks greatly influenced by fractures. In this study, we investigated the distribution of high-salinity groundwater at two volcanic rock sites and one sedimentary rock site, each characterised by different hydrogeological features. Our investigations included (1) applying the controlled source audio-frequency magnetotelluric (CSAMT) method and (2) conducting laboratory tests to measure the electrical properties of rock core samples. We interpreted the 2D resistivity sections by referring to previous data on geology and geochemistry of groundwater. At the Tokusa site, an area of inland volcanic rocks, low resistivity zones were detected along a fault running through volcanic rocks and shallow sediments. The results suggest that fluids rise through the Tokusa-Jifuku Fault to penetrate shallow sediments in a direction parallel to the river, and some fluids are diluted by rainwater. At the Oki site, a volcanic island on a continental shelf, four resistivity zones (in upward succession: low, high, low and high) were detected. The results suggest that these four zones were formed during a transgression-regression cycle caused by the last glacial period. At the Saijo site, located on a coastal plain composed of thick sediments, we observed a deep low resistivity zone, indicative of fossil seawater remnant from a transgression after the last glacial period. The current coastal

Deep sequencing of subseafloor eukaryotic rRNA reveals active Fungi across marine subsurface provinces.

Directory of Open Access Journals (Sweden)

William Orsi

Full Text Available The deep marine subsurface is a vast habitat for microbial life where cells may live on geologic timescales. Because DNA in sediments may be preserved on long timescales, ribosomal RNA (rRNA is suggested to be a proxy for the active fraction of a microbial community in the subsurface. During an investigation of eukaryotic 18S rRNA by amplicon pyrosequencing, unique profiles of Fungi were found across a range of marine subsurface provinces including ridge flanks, continental margins, and abyssal plains. Subseafloor fungal populations exhibit statistically significant correlations with total organic carbon (TOC, nitrate, sulfide, and dissolved inorganic carbon (DIC. These correlations are supported by terminal restriction length polymorphism (TRFLP analyses of fungal rRNA. Geochemical correlations with fungal pyrosequencing and TRFLP data from this geographically broad sample set suggests environmental selection of active Fungi in the marine subsurface. Within the same dataset, ancient rRNA signatures were recovered from plants and diatoms in marine sediments ranging from 0.03 to 2.7 million years old, suggesting that rRNA from some eukaryotic taxa may be much more stable than previously considered in the marine subsurface.

Imaging subsurface geology and volatile organic compound plumes

International Nuclear Information System (INIS)

Qualheim, B.J.; Daley, P.F.; Johnson, V.; McPherrin, R.V.; Laguna, G.

1992-03-01

Lawrence Livermore National Laboratory (LLNL) (Fig. 1) is in the final stages of the Superfund decisionmaking process for site remediation and restoration. In the process of characterizing the subsurface of the LLNL site, we have developed unique methods of collecting, storing, retrieving, and imaging geologic and chemical data from more than 350 drill holes. The lateral and vertical continuity of subsurface paleostream channels were mapped for the entire LLNL site using geologic descriptions from core samples, cuttings, and interpretations from geophysical logs. A computer-aided design and drafting program, SLICE, written at LLNL, was used to create two-dimensional maps of subsurface sediments, and state-of-the-art software produced three-dimensional images of the volatile organic compound (VOC) plumes using data from water and core fluid analyses

Effects of surface and subsurface drip irrigation regimes with saline water on yield and water use efficiency of potato in arid conditions of Tunisia

Directory of Open Access Journals (Sweden)

Fathia El Mokh

2014-12-01

Full Text Available Field experiments were conducted on a sandy soil during spring of 2009 and autumn of 2010 in southern Tunisia for evaluating the effects of two drip irrigation methods and three irrigation regimes on soil moisture and salinity, yield and water use efficiency of potato (Solanum tuberosum L.. The surface drip (SDI and subsurface drip (SSDI irrigation methods were used. Irrigation regimes consisted in replacement of cumulated ETc when readily available water is depleted with levels of 100% (FI100, 60% (DI60 and 30% (DI30. FI100 was considered as full irrigation while DI60 and DI30 were considered as deficit irrigation regimes. Well water with an ECi of 7.0 dS/m was used for irrigation. Findings are globally consistent between the two experiments. Results show that soil moisture content and salinity were significantly affected by irrigation treatments and methods. Higher soil moisture content and lower soil salinity were maintained with SSDI than SDI for all irrigation treatments. For both irrigation methods, higher salinity and lower moisture content in the root zone are observed under DI60 and DI30 treatments compared to FI100. Potato yields were highest over two cropping periods for the SSDI method although no significant differences were observed with the SDI. Irrigation regimes resulted in significant difference in both irrigation methods on yield and its components. Yields were highest under FI100. Compared to FI100, considerable reductions in potato yields were observed under DI60 and DI30 deficit treatments resulting from a reduction in tubers number/m² and average tuber weight and size. Water use efficiency (WUE was found to vary significantly among irrigation methods and treatments and varied between 5.9 and 20.5 kg/m3. WUE of SSDI method had generally higher values than SDI. The lowest WUE values were observed for the FI100 treatment, while the highest values were obtained under DI30 treatment for both methods. SSDI method provides

Reductive immobilization of U(VI) in Fe(III) oxide-reducing subsurface sediments: Analysis of coupled microbial-geochemical processes in experimental reactive transport systems. Final Scientific/Technical Report-EMSP 73914

International Nuclear Information System (INIS)

Eric E. Roden Matilde M. Urrutia Mark O. Barnett Clifford R. Lange

2005-01-01

The purpose of this research was to provide information to DOE on microbiological and geochemical processes underlying the potential use of dissimilatory metal-reducing bacteria (DMRB) to create subsurface redox barriers for immobilization of uranium and other redox-sensitive metal/radionuclide contaminants that were released to the environment in large quantities during Cold War nuclear weapons manufacturing operations. Several fundamental scientific questions were addressed in order to understand and predict how such treatment procedures would function under in situ conditions in the subsurface. These questions revolved the coupled microbial-geochemical phenomena which are likely to occur within a redox barrier treatment zone, and on the dynamic interactions between hydrologic flux and biogeochemical process rates. First, we assembled a robust conceptual understanding and numerical framework for modeling the kinetics of microbial Fe(III) oxide reduction and associated DMRB growth in sediments. Development of this framework is a critical prerequisite for predicting the potential effectiveness of DMRB-promoted subsurface bioremediation, since Fe(III) oxides are expected to be the primary source of electron-accepting capacity for growth and maintenance of DMRB in subsurface environments. We also defined in detail the kinetics of microbial (enzymatic) versus abiotic, ferrous iron-promoted reduction of U(VI) in the presence and absence of synthetic and natural Fe(III) oxide materials. The results of these studies suggest that (i) the efficiency of dissolved U(VI) scavenging may be influenced by the kinetics of enzymatic U(VI) reduction in systems with relative short fluid residence times; (2) association of U(VI) with diverse surface sites in natural soils and sediments has the potential to limit the rate and extent of microbial U(VI) reduction, and in turn modulate the effectiveness of in situ U(VI) bioremediation; and (3) abiotic, ferrous iron (Fe(II)) drive n U

Impact of hydrogeological factors on groundwater salinization due to ocean-surge inundation

Science.gov (United States)

Yang, Jie; Zhang, Huichen; Yu, Xuan; Graf, Thomas; Michael, Holly A.

2018-01-01

Ocean surges cause seawater inundation of coastal inland areas. Subsequently, seawater infiltrates into coastal aquifers and threatens the fresh groundwater resource. The severity of resulting salinization can be affected by hydrogeological factors including aquifer properties and hydrologic conditions, however, little research has been done to assess these effects. To understand the impacts of hydrogeological factors on groundwater salinization, we numerically simulated an ocean-surge inundation event on a two-dimensional conceptual coastal aquifer using a coupled surface-subsurface approach. We varied model permeability (including anisotropy), inland hydraulic gradient, and recharge rate. Three salinization-assessment indicators were developed, based on flushing time, depth of salt penetration, and a combination of the two, weighted flushing time, with which the impact of hydrogeological factors on groundwater vulnerability to salinization were quantitatively assessed. The vulnerability of coastal aquifers increases with increasing isotropic permeability. Low horizontal permeability (kx) and high vertical permeability (kz) lead to high aquifer vulnerability, and high kx and low kz lead to low aquifer vulnerability. Vulnerability decreases with increasing groundwater hydraulic gradient and increasing recharge rate. Additionally, coastal aquifers with a low recharge rate (R ≤ 300 mm yr-1) may be highly vulnerable to ocean-surge inundation. This study shows how the newly introduced indicators can be used to quantitatively assess coastal aquifer vulnerability. The results are important for global vulnerability assessment of coastal aquifers to ocean-surge inundation.

Uranium Biomineralization by Natural Microbial Phosphatase Activities in the Subsurface

Energy Technology Data Exchange (ETDEWEB)

Sobecky, Patricia A. [Univ. of Alabama, Tuscaloosa, AL (United States)

2015-04-06

In this project, inter-disciplinary research activities were conducted in collaboration among investigators at The University of Alabama (UA), Georgia Institute of Technology (GT), Lawrence Berkeley National Laboratory (LBNL), Brookhaven National Laboratory (BNL), the DOE Joint Genome Institute (JGI), and the Stanford Synchrotron Radiation Light source (SSRL) to: (i) confirm that phosphatase activities of subsurface bacteria in Area 2 and 3 from the Oak Ridge Field Research Center result in solid U-phosphate precipitation in aerobic and anaerobic conditions; (ii) investigate the eventual competition between uranium biomineralization via U-phosphate precipitation and uranium bioreduction; (iii) determine subsurface microbial community structure changes of Area 2 soils following organophosphate amendments; (iv) obtain the complete genome sequences of the Rahnella sp. Y9-602 and the type-strain Rahnella aquatilis ATCC 33071 isolated from these soils; (v) determine if polyphosphate accumulation and phytate hydrolysis can be used to promote U(VI) biomineralization in subsurface sediments; (vi) characterize the effect of uranium on phytate hydrolysis by a new microorganism isolated from uranium-contaminated sediments; (vii) utilize positron-emission tomography to label and track metabolically-active bacteria in soil columns, and (viii) study the stability of the uranium phosphate mineral product. Microarray analyses and mineral precipitation characterizations were conducted in collaboration with DOE SBR-funded investigators at LBNL. Thus, microbial phosphorus metabolism has been shown to have a contributing role to uranium immobilization in the subsurface.

Uranium Biomineralization by Natural Microbial Phosphatase Activities in the Subsurface

International Nuclear Information System (INIS)

Sobecky, Patricia A.

2015-01-01

In this project, inter-disciplinary research activities were conducted in collaboration among investigators at The University of Alabama (UA), Georgia Institute of Technology (GT), Lawrence Berkeley National Laboratory (LBNL), Brookhaven National Laboratory (BNL), the DOE Joint Genome Institute (JGI), and the Stanford Synchrotron Radiation Light source (SSRL) to: (i) confirm that phosphatase activities of subsurface bacteria in Area 2 and 3 from the Oak Ridge Field Research Center result in solid U-phosphate precipitation in aerobic and anaerobic conditions; (ii) investigate the eventual competition between uranium biomineralization via U-phosphate precipitation and uranium bioreduction; (iii) determine subsurface microbial community structure changes of Area 2 soils following organophosphate amendments; (iv) obtain the complete genome sequences of the Rahnella sp. Y9-602 and the type-strain Rahnella aquatilis ATCC 33071 isolated from these soils; (v) determine if polyphosphate accumulation and phytate hydrolysis can be used to promote U(VI) biomineralization in subsurface sediments; (vi) characterize the effect of uranium on phytate hydrolysis by a new microorganism isolated from uranium-contaminated sediments; (vii) utilize positron-emission tomography to label and track metabolically-active bacteria in soil columns, and (viii) study the stability of the uranium phosphate mineral product. Microarray analyses and mineral precipitation characterizations were conducted in collaboration with DOE SBR-funded investigators at LBNL. Thus, microbial phosphorus metabolism has been shown to have a contributing role to uranium immobilization in the subsurface.

Abundance and Diversity of Denitrifying and Anammox Bacteria in Seasonally Hypoxic and Sulfidic Sediments of the Saline Lake Grevelingen

Science.gov (United States)

Lipsewers, Yvonne A.; Hopmans, Ellen C.; Meysman, Filip J. R.; Sinninghe Damsté, Jaap S.; Villanueva, Laura

2016-01-01

Denitrifying and anammox bacteria are involved in the nitrogen cycling in marine sediments but the environmental factors that regulate the relative importance of these processes are not well constrained. Here, we evaluated the abundance, diversity, and potential activity of denitrifying, anammox, and sulfide-dependent denitrifying bacteria in the sediments of the seasonally hypoxic saline Lake Grevelingen, known to harbor an active microbial community involved in sulfur oxidation pathways. Depth distributions of 16S rRNA gene, nirS gene of denitrifying and anammox bacteria, aprA gene of sulfur-oxidizing and sulfate-reducing bacteria, and ladderane lipids of anammox bacteria were studied in sediments impacted by seasonally hypoxic bottom waters. Samples were collected down to 5 cm depth (1 cm resolution) at three different locations before (March) and during summer hypoxia (August). The abundance of denitrifying bacteria did not vary despite of differences in oxygen and sulfide availability in the sediments, whereas anammox bacteria were more abundant in the summer hypoxia but in those sediments with lower sulfide concentrations. The potential activity of denitrifying and anammox bacteria as well as of sulfur-oxidizing, including sulfide-dependent denitrifiers and sulfate-reducing bacteria, was potentially inhibited by the competition for nitrate and nitrite with cable and/or Beggiatoa-like bacteria in March and by the accumulation of sulfide in the summer hypoxia. The simultaneous presence and activity of organoheterotrophic denitrifying bacteria, sulfide-dependent denitrifiers, and anammox bacteria suggests a tight network of bacteria coupling carbon-, nitrogen-, and sulfur cycling in Lake Grevelingen sediments. PMID:27812355

Abundance and diversity of denitrifying and anammox bacteria in seasonally hypoxic and sulfidic sediments of the saline Lake Grevelingen

Directory of Open Access Journals (Sweden)

Yvonne A. Lipsewers

2016-10-01

Full Text Available Denitrifying and anammox bacteria are involved in the nitrogen cycling in marine sediments but the environmental factors that regulate the relative importance of these processes are not well constrained. Here, we evaluated the abundance, diversity and potential activity of denitrifying, anammox, and sulfide-dependent denitrifying bacteria in the sediments of the seasonally hypoxic saline Lake Grevelingen, known to harbor an active microbial community involved in sulfur oxidation pathways. Depth distributions of 16S rRNA gene, nirS gene of denitrifying and anammox bacteria, aprA gene of sulfur-oxidizing and sulfate-reducing bacteria, and ladderane lipids of anammox bacteria were studied in sediments impacted by seasonally hypoxic bottom waters. Samples were collected down to 5 cm depth (1 cm resolution at three different locations before (March and during summer hypoxia (August. The abundance of denitrifying bacteria did not vary despite of differences in oxygen and sulfide availability in the sediments, whereas anammox bacteria were more abundant in the summer hypoxia but in those sediments with lower sulfide concentrations. The potential activity of denitrifying and anammox bacteria as well as of sulfur-oxidizing, including sulfide-dependent denitrifiers and sulfate-reducing bacteria, was potentially inhibited by the competition for nitrate and nitrite with cable and/or Beggiatoa-like bacteria in March and by the accumulation of sulfide in the summer hypoxia. The simultaneous presence and activity of organoheterotrophic denitrifying bacteria, sulfide-dependent denitrifiers and anammox bacteria suggests a tight network of bacteria coupling carbon-, nitrogen- and sulfur cycling in Lake Grevelingen sediments.

Geoelectrical monitoring of simulated subsurface leakage to support high-hazard nuclear decommissioning at the Sellafield Site, UK.

Science.gov (United States)

Kuras, Oliver; Wilkinson, Paul B; Meldrum, Philip I; Oxby, Lucy S; Uhlemann, Sebastian; Chambers, Jonathan E; Binley, Andrew; Graham, James; Smith, Nicholas T; Atherton, Nick

2016-10-01

A full-scale field experiment applying 4D (3D time-lapse) cross-borehole Electrical Resistivity Tomography (ERT) to the monitoring of simulated subsurface leakage was undertaken at a legacy nuclear waste silo at the Sellafield Site, UK. The experiment constituted the first application of geoelectrical monitoring in support of decommissioning work at a UK nuclear licensed site. Images of resistivity changes occurring since a baseline date prior to the simulated leaks revealed likely preferential pathways of silo liquor simulant flow in the vadose zone and upper groundwater system. Geophysical evidence was found to be compatible with historic contamination detected in permeable facies in sediment cores retrieved from the ERT boreholes. Results indicate that laterally discontinuous till units forming localized hydraulic barriers substantially affect flow patterns and contaminant transport in the shallow subsurface at Sellafield. We conclude that only geophysical imaging of the kind presented here has the potential to provide the detailed spatial and temporal information at the (sub-)meter scale needed to reduce the uncertainty in models of subsurface processes at nuclear sites. Copyright © 2016 British Geological Survey, NERC. Published by Elsevier B.V. All rights reserved.

Development of Surface Complexation Models of Cr(VI) Adsorption on Soils, Sediments and Model Mixtures of Kaolinite, Montmorillonite, γ-Alumina, Hydrous Manganese and Ferric Oxides and Goethite

Energy Technology Data Exchange (ETDEWEB)

Koretsky, Carla [Western Michigan University

2013-11-29

Hexavalent chromium is a highly toxic contaminant that has been introduced into aquifers and shallow sediments and soils via many anthropogenic activities. Hexavalent chromium contamination is a problem or potential problem in the shallow subsurface at several DOE sites, including Hanford, Idaho National Laboratory, Los Alamos National Laboratory and the Oak Ridge Reservation (DOE, 2008). To accurately quantify the fate and transport of hexavalent chromium at DOE and other contaminated sites, robust geochemical models, capable of correctly predicting changes in chromium chemical form resulting from chemical reactions occurring in subsurface environments are needed. One important chemical reaction that may greatly impact the bioavailability and mobility of hexavalent chromium in the subsurface is chemical binding to the surfaces of particulates, termed adsorption or surface complexation. Quantitative thermodynamic surface complexation models have been derived that can correctly calculate hexavalent chromium adsorption on well-characterized materials over ranges in subsurface conditions, such pH and salinity. However, models have not yet been developed for hexavalent chromium adsorption on many important constituents of natural soils and sediments, such as clay minerals. Furthermore, most of the existing thermodynamic models have been developed for relatively simple, single solid systems and have rarely been tested for the complex mixtures of solids present in real sediments and soils. In this study, the adsorption of hexavalent chromium was measured as a function of pH (3-10), salinity (0.001 to 0.1 M NaNO3), and partial pressure of carbon dioxide(0-5%) on a suite of naturally-occurring solids including goethite (FeOOH), hydrous manganese oxide (MnOOH), hydrous ferric oxide (Fe(OH)3), γ-alumina (Al2O3), kaolinite (Al2Si2O5(OH)4), and montmorillonite (Na3(Al, Mg)2Si4O10(OH)2-nH2O). The results show that all of these materials can bind substantial quantities of

Geophysical Monitoring of Coupled Microbial and Geochemical Processes During Stimulated Subsurface Bioremediation

International Nuclear Information System (INIS)

Williams, Kenneth H.; Kemna, Andreas; Wilkins, Michael J.; Druhan, Jennifer L.; Arntzen, Evan V.; N'Guessan, A. Lucie; Long, Philip E.; Hubbard, Susan S.; Banfield, Jillian F.

2009-01-01

Understanding how microorganisms alter their physical and chemical environment during bioremediation is hindered by our inability to resolve subsurface microbial activity with high spatial resolution. Here we demonstrate the use of a minimally invasive geophysical technique to monitor stimulated microbial activity during acetate amendment in an aquifer near Rifle, Colorado. During electrical induced polarization (IP) measurements, spatiotemporal variations in the phase response between imposed electric current and the resultant electric field correlated with changes in groundwater geochemistry accompanying stimulated iron and sulfate reduction and sulfide mineral precipitation. The magnitude of the phase response varied with measurement frequency (0.125 and 1 Hz) and was dependent upon the dominant metabolic process. The spectral effect was corroborated using a biostimulated column experiment containing Rifle sediments and groundwater. Fluids and sediments recovered from regions exhibiting an anomalous phase response were enriched in Fe(II), dissolved sulfide, and cell-associated FeS nanoparticles. The accumulation of mineral precipitates and electroactive ions altered the ability of pore fluids to conduct electrical charge, accounting for the anomalous IP response and revealing the usefulness of multifrequency IP measurements for monitoring mineralogical and geochemical changes accompanying stimulated subsurface bioremediation

Two fixed ratio dilutions for soil salinity monitoring in hypersaline wetlands.

Directory of Open Access Journals (Sweden)

Juan Herrero

Full Text Available Highly soluble salts are undesirable in agriculture because they reduce yields or the quality of most cash crops and can leak to surface or sub-surface waters. In some cases salinity can be associated with unique history, rarity, or special habitats protected by environmental laws. Yet in considering the measurement of soil salinity for long-term monitoring purposes, adequate methods are required. Both saturated paste extracts, intended for agriculture, and direct surface and/or porewater salinity measurement, used in inundated wetlands, are unsuited for hypersaline wetlands that often are only occasionally inundated. For these cases, we propose the use of 1:5 soil/water (weight/weight extracts as the standard for expressing the electrical conductivity (EC of such soils and for further salt determinations. We also propose checking for ion-pairing with a 1:10 or more diluted extract in hypersaline soils. As an illustration, we apply the two-dilutions approach to a set of 359 soil samples from saline wetlands ranging in ECe from 2.3 dS m(-1 to 183.0 dS m(-1. This easy procedure will be useful in survey campaigns and in the monitoring of soil salt content.

Two fixed ratio dilutions for soil salinity monitoring in hypersaline wetlands.

Science.gov (United States)

Herrero, Juan; Weindorf, David C; Castañeda, Carmen

2015-01-01

Highly soluble salts are undesirable in agriculture because they reduce yields or the quality of most cash crops and can leak to surface or sub-surface waters. In some cases salinity can be associated with unique history, rarity, or special habitats protected by environmental laws. Yet in considering the measurement of soil salinity for long-term monitoring purposes, adequate methods are required. Both saturated paste extracts, intended for agriculture, and direct surface and/or porewater salinity measurement, used in inundated wetlands, are unsuited for hypersaline wetlands that often are only occasionally inundated. For these cases, we propose the use of 1:5 soil/water (weight/weight) extracts as the standard for expressing the electrical conductivity (EC) of such soils and for further salt determinations. We also propose checking for ion-pairing with a 1:10 or more diluted extract in hypersaline soils. As an illustration, we apply the two-dilutions approach to a set of 359 soil samples from saline wetlands ranging in ECe from 2.3 dS m(-1) to 183.0 dS m(-1). This easy procedure will be useful in survey campaigns and in the monitoring of soil salt content.

Subsurface Science Program Bibliography, 1985--1992

International Nuclear Information System (INIS)

1992-08-01

The Subsurface Science Program sponsors long-term basic research on (1) the fundamental physical, chemical, and biological mechanisms that control the reactivity, mobilization, stability, and transport of chemical mixtures in subsoils and ground water; (2) hydrogeology, including the hydraulic, microbiological, and geochemical properties of the vadose and saturated zones that control contaminant mobility and stability, including predictive modeling of coupled hydraulic-geochemical-microbial processes; and (3) the microbiology of deep sediments and ground water. TWs research, focused as it is on the natural subsurface environments that are most significantly affected by the more than 40 years of waste generation and disposal at DOE sites, is making important contributions to cleanup of DOE sites. Past DOE waste-disposal practices have resulted in subsurface contamination at DOE sites by unique combinations of radioactive materials and organic and inorganic chemicals (including heavy metals), which make site cleanup particularly difficult. The long- term (10- to 30-year) goal of the Subsurface Science Program is to provide a foundation of fundamental knowledge that can be used to reduce environmental risks and to provide a sound scientific basis for cost-effective cleanup strategies. The Subsurface Science Program is organized into nine interdisciplinary subprograms, or areas of basic research emphasis. The subprograms currently cover the areas of Co-Contaminant Chemistry, Colloids/Biocolloids, Multiphase Fluid Flow, Biodegradation/ Microbial Physiology, Deep Microbiology, Coupled Processes, Field-Scale (Natural Heterogeneity and Scale), and Environmental Science Research Center

Fate of Magnesium Chloride Brine Applied to Suppress Dust from Unpaved Roads at the INEEL Subsurface Disposal Area

International Nuclear Information System (INIS)

Larry Hull; Carolyn Bishop

2004-01-01

Between 1984 and 1993, MgCl 2 brine was used to suppress dust on unpaved roads at a radioactive waste subsurface disposal area. Because Cl - might enhance corrosion of buried metals in the waste, we investigated the distribution and fate of Cl - in the vadose zone using pore water samples collected from suction lysimeters and soluble salt concentrations extracted from sediment samples. The Cl/Br mass ratio and the total dissolved Cl - concentration of pore water show that brine contamination occurs primarily within 13 m of treated roads, but can extend as much as 30 m laterally in near-surface sedimentary deposits. Within the deep vadose zone, which consists of interlayered basalt lava flows and sedimentary interbeds, brine has moved up to 110 m laterally. This lateral migration suggests formation of perched water and horizontal transport during periods of high recharge. In a few locations, brine migrated to depths of 67 m within 3 to 5 yr. Elevated Cl - concentrations were found to depths of 2 m in roadbed material. In drainage ditches along roads, where runoff accumulates and recharge of surface water is high, Cl - was flushed from the sediments in 3 to 4 yr. In areas of lower recharge, Cl - remained in the sediments after 5 yr. Vertical brine movement is directly related to surface recharge through sediments. The distribution of Cl - in pore water and sediments is consistent with estimates of vadose zone residence times and spatial distribution of surface water recharge from other investigations at the subsurface disposal area

Subsurface damage mechanism of high speed grinding process in single crystal silicon revealed by atomistic simulations

International Nuclear Information System (INIS)

Li, Jia; Fang, Qihong; Zhang, Liangchi; Liu, Youwen

2015-01-01

Highlights: • Molecular dynamic model of nanoscale high speed grinding of silicon workpiece has been established. • The effect of grinding speed on subsurface damage and grinding surface integrity by analyzing the chip, dislocation movement, and phase transformation during high speed grinding process are thoroughly investigated. • Subsurface damage is studied by the evolution of surface area at first time for more obvious observation on transition from ductile to brittle. • The hydrostatic stress and von Mises stress by the established analytical model are studied subsurface damage mechanism during nanoscale grinding. - Abstract: Three-dimensional molecular dynamics (MD) simulations are performed to investigate the nanoscale grinding process of single crystal silicon using diamond tool. The effect of grinding speed on subsurface damage and grinding surface integrity by analyzing the chip, dislocation movement, and phase transformation are studied. We also establish an analytical model to calculate several important stress fields including hydrostatic stress and von Mises stress for studying subsurface damage mechanism, and obtain the dislocation density on the grinding subsurface. The results show that a higher grinding velocity in machining brittle material silicon causes a larger chip and a higher temperature, and reduces subsurface damage. However, when grinding velocity is above 180 m s −1 , subsurface damage thickness slightly increases because a higher grinding speed leads to the increase in grinding force and temperature, which accelerate dislocation nucleation and motion. Subsurface damage is studied by the evolution of surface area at first time for more obvious observation on transition from ductile to brittle, that provides valuable reference for machining nanometer devices. The von Mises stress and the hydrostatic stress play an important role in the grinding process, and explain the subsurface damage though dislocation mechanism under high

Optimal Electromagnetic (EM) Geophysical Techniques to Map the Concentration of Subsurface Ice and Adsorbed Water on Mars and the Moon

Science.gov (United States)

Stillman, D. E.; Grimm, R. E.

2013-12-01

dielectric spectroscopy at the Cold Regions Research and Engineering Laboratory (CRREL) permafrost tunnel in Fox, AK. We were able to detect the ice relaxation in the subsurface despite the considerable amount of subsurface unfrozen water due to the presence of montmorillonite clay and much warmer temperatures than Mars or permanently shadowed regions of the Moon. While dielectric spectroscopy can be used to determine ice and adsorbed water content it does not possess the high resolution mapping capability of a GPR. Moreover, GPR cannot detect subsurface ice content in ice-sediment mixtures as evidenced in the interpretation of the Medusae Fossae Formation. Orbital radar surveys show this unit has a low attenuation and a dielectric permittivity near 4. This allows the formation to be interpreted as ice-rich or a dry high-porosity volcanic tuff unit. Therefore, combining GPR and dielectric spectroscopy will enable high-resolution structural and volatile mapping of the subsurface. Furthermore, the addition of neutron spectroscopy would add total hydrogen abundance in the top meter. This could lead to the determination of how much hydrogen resides in ice, adsorbed water, and minerals.

Evolution of the electrical resistivity anisotropy during saline tracer tests: insights from geoelectrical milli-fluidic experiments

Science.gov (United States)

Jougnot, D.; Jimenez-Martinez, J.; Legendre, R.; Le Borgne, T.; Meheust, Y.; Linde, N.

2017-12-01

The use of time-lapse electrical resistivity tomography has been largely developed in environmental studies to remotely monitor water saturation and contaminant plumes migration. However, subsurface heterogeneities, and corresponding preferential transport paths, yield a potentially large anisotropy in the electrical properties of the subsurface. In order to study this effect, we have used a newly developed geoelectrical milli-fluidic experimental set-up with a flow cell that contains a 2D porous medium consisting of a single layer of cylindrical solid grains. We performed saline tracer tests under full and partial water saturations in that cell by jointly injecting air and aqueous solutions with different salinities. The flow cell is equipped with four electrodes to measure the bulk electrical resistivity at the cell's scale. The spatial distribution of the water/air phases and the saline solute concentration field in the water phase are captured simultaneously with a high-resolution camera by combining a fluorescent tracer with the saline solute. These data are used to compute the longitudinal and transverse effective electrical resistivity numerically from the measured spatial distributions of the fluid phases and the salinity field. This approach is validated as the computed longitudinal effective resistivities are in good agreement with the laboratory measurements. The anisotropy in electrical resistivity is then inferred from the computed longitudinal and transverse effective resistivities. We find that the spatial distribution of saline tracer, and potentially air phase, drive temporal changes in the effective resistivity through preferential paths or barriers for electrical current at the pore scale. The resulting heterogeneities in the solute concentrations lead to strong anisotropy of the effective bulk electrical resistivity, especially for partially saturated conditions. Therefore, considering the electrical resistivity as a tensor could improve our

Subsurface Nitrogen-Cycling Microbial Communities at Uranium Contaminated Sites in the Colorado River Basin

Science.gov (United States)

Cardarelli, E.; Bargar, J.; Williams, K. H.; Dam, W. L.; Francis, C.

2015-12-01

Throughout the Colorado River Basin (CRB), uranium (U) persists as a relic contaminant of former ore processing activities. Elevated solid-phase U levels exist in fine-grained, naturally-reduced zone (NRZ) sediments intermittently found within the subsurface floodplain alluvium of the following Department of Energy-Legacy Management sites: Rifle, CO; Naturita, CO; and Grand Junction, CO. Coupled with groundwater fluctuations that alter the subsurface redox conditions, previous evidence from Rifle, CO suggests this resupply of U may be controlled by microbially-produced nitrite and nitrate. Nitrification, the two-step process of archaeal and bacterial ammonia-oxidation followed by bacterial nitrite oxidation, generates nitrate under oxic conditions. Our hypothesis is that when elevated groundwater levels recede and the subsurface system becomes anoxic, the nitrate diffuses into the reduced interiors of the NRZ and stimulates denitrification, the stepwise anaerobic reduction of nitrate/nitrite to dinitrogen gas. Denitrification may then be coupled to the oxidation of sediment-bound U(IV) forming mobile U(VI), allowing it to resupply U into local groundwater supplies. A key step in substantiating this hypothesis is to demonstrate the presence of nitrogen-cycling organisms in U-contaminated, NRZ sediments from the upper CRB. Here we investigate how the diversity and abundances of nitrifying and denitrifying microbial populations change throughout the NRZs of the subsurface by using functional gene markers for ammonia-oxidation (amoA, encoding the α-subunit of ammonia monooxygenase) and denitrification (nirK, nirS, encoding nitrite reductase). Microbial diversity has been assessed via clone libraries, while abundances have been determined through quantitative polymerase chain reaction (qPCR), elucidating how relative numbers of nitrifiers (amoA) and denitrifiers (nirK, nirS) vary with depth, vary with location, and relate to uranium release within NRZs in sediment

Formation and spreading of Arabian Sea high-salinity water mass

Digital Repository Service at National Institute of Oceanography (India)

PrasannaKumar, S.; Prasad, T.G.

The formation and seasonal spreading of the Arabian Sea High-Salinity Water (ASHSW) mass were studied based on the monthly mean climatology of temperature and salinity in the Arabian Sea, north of the equator and west of 80 degrees E, on a 2 degrees...

How are macroinvertebrates of slow flowing lotic systems directly affected by suspended and deposited sediments?

Energy Technology Data Exchange (ETDEWEB)

Kefford, Ben J., E-mail: ben.kefford@rmit.edu.a [Biotechnology and Environmental Biology, School of Applied Sciences, RMIT University, PO Box 71, Bundoora, Victoria 3083 (Australia); Zalizniak, Liliana [Biotechnology and Environmental Biology, School of Applied Sciences, RMIT University, PO Box 71, Bundoora, Victoria 3083 (Australia); Dunlop, Jason E. [Department of Environment and Resource Management (DERM), 120 Meiers Rd, Indooroopilly, Queensland 4068 (Australia); Smart Water Research Facility, Griffith University, Queensland (Australia); Nugegoda, Dayanthi [Biotechnology and Environmental Biology, School of Applied Sciences, RMIT University, PO Box 71, Bundoora, Victoria 3083 (Australia); Choy, Satish C. [Department of Environment and Resource Management (DERM), 120 Meiers Rd, Indooroopilly, Queensland 4068 (Australia)

2010-02-15

The effects of suspended and deposited sediments on the macroinvertebrates are well documented in upland streams but not in slower flowing lowland rivers. Using species found in lowland lotic environments, we experimentally evaluate mechanisms for sediments to affect macroinvertebrates, and in one experiment whether salinity alters the effect of suspended sediments. Suspended kaolin clay reduced feeding of Ischnura heterosticta (Odonata: Coenagrionidae) at high turbidity (1000-1500 NTU) but had no effects on feeding of Hemianax papuensis (Odonata: Aeshnidae) and Micronecta australiensis (Hemiptera: Corixidae). In freshwater (0.1 mS/cm), survival of Ischnura aurora was poor in clear water, but improved with suspended kaolin. Growth and feeding of I. aurora were unaffected by suspended sediments and salinity. Burial (1-5 mm) of eggs with kaolin or sand reduced hatching in Physa acuta (Gastropoda: Physidae), Gyraulus tasmanica (Gastropoda: Planorbidae) and Chironomus cloacalis (Diptera: Chironomidae). Settling sediments may pose greater risk to lowland lotic invertebrates than suspended sediments. - Sediment deposition may be more directly detrimental to macroinvertebrates of lowland rivers than suspended sediments.

Seasonal variation in apparent conductivity and soil salinity at two Narragansett Bay salt marshes

Science.gov (United States)

Measurement of the apparent conductivity of salt marsh sediments using electromagnetic induction (EMI) is a rapid alternative to traditional methods of salinity determination that can be used to map soil salinity across a marsh surface. Soil salinity measures can provide informat...

Evolution of Planetary Ice-Ocean Systems: Effects of Salinity

Science.gov (United States)

Allu Peddinti, D.; McNamara, A. K.

2015-12-01

Planetary oceanography is enjoying renewed attention thanks to not only the detection of several exoplanetary ocean worlds but also due to the expanding family of ocean worlds within our own star system. Our solar system is now believed to host about nine ocean worlds including Earth, some dwarf planets and few moons of Jupiter and Saturn. Amongst them, Europa, like Earth is thought to have an ice Ih-liquid water system. However, the thickness of the Europan ice-ocean system is much larger than that of the Earth. The evolution of this system would determine the individual thicknesses of the ice shell and the ocean. In turn, these thicknesses can alter the course of evolution of the system. In a pure H2O system, the thickness of the ice shell would govern if heat loss occurs entirely by conduction or if the shell begins to convect as it attains a threshold thickness. This switch between conduction-convection regimes could determine the longevity of the subsurface ocean and hence define the astrobiological potential of the planetary body at any given time. In reality, however, the system is not pure water ice. The detected induced magnetic field infers a saline ocean layer. Salts are expected to act as an anti-freeze allowing a subsurface ocean to persist over long periods but the amount of salts would determine the extent of that effect. In our current study, we use geodynamic models to examine the effect of salinity on the evolution of ice-ocean system. An initial ocean with different salinities is allowed to evolve. The effect of salinity on thickness of the two layers at any time is examined. We also track how salinity controls the switch between conductive-convective modes. The study shows that for a given time period, larger salinities can maintain a thick vigorously convecting ocean while the smaller salinities behave similar to a pure H2O system leading to a thick convecting ice-shell. A range of salinities identified can potentially predict the current state

Circulation of the thermocline salinity maximum waters off the Northern Brazil as inferred from in situ measurements and numerical results

Energy Technology Data Exchange (ETDEWEB)

Silva, A.C. [Universidade Federal do Ceara, Fortaleza, CE (Brazil). Inst. de Ciencias do Mar; Bourles, B. [Inst. de Recherche pour le Developpement, Cotonou (Benin); Araujo, M. [UFPE, Recife, PE (Brazil). Lab. de Oceanografia Fisica Estuarina e Costeira

2009-07-01

High resolution hydrographic observations of temperature and salinity are used to analyse the subsurface circulation along the coast of North Brazil, off the Amazon mouth, between 2 S and 6 N. Observations are presented from four cruises carried out in different periods of the year (March-May 1995, May-June 1999, July-August 2001 and October-November 1997). Numerical model outputs complement the results of the shipboard measurements, and are used to complete the descriptions of mesoscale circulation. The Salinity Maximum Waters are here analyzed, principally in order to describe the penetration of waters originating in the Southern Hemisphere toward the Northern Hemisphere through the North Brazil Current (NBC)/North Brazil Undercurrent (NBUC). Our results show that, if the Equatorial Undercurrent (EUC) is fed by Northern Atlantic Waters, this contribution may only occur in the ocean interior, east of the western boundary around 100 m depth. Modeling results indicate a southward penetration of the Western Boundary Undercurrent (WBUC) below the thermocline, along the North Brazilian coast into the EUC or the North Equatorial Undercurrent (NEUC) (around 48 W-3 N). The WBUC in the region does not flow more south than 3 N. The northern waters are diverted eastward either by the NBC retroflection or by the northern edge of the associated clockwise rings. The existence of subsurface mesoscale rings associated to the NBC retroflection is evidenced, without any signature in the surface layer, so confirming earlier numerical model outputs. These subsurface anticyclones, linked to the NBC/NBUC retroflection into the North Equatorial Undercurrent and the EUC, contribute to the transport of South Atlantic high salinity water into the Northern Hemisphere. (orig.)

Flow Convergence Caused by a Salinity Minimum in a Tidal Channel

Directory of Open Access Journals (Sweden)

John C. Warner

2006-12-01

Full Text Available Residence times of dissolved substances and sedimentation rates in tidal channels are affected by residual (tidally averaged circulation patterns. One influence on these circulation patterns is the longitudinal density gradient. In most estuaries the longitudinal density gradient typically maintains a constant direction. However, a junction of tidal channels can create a local reversal (change in sign of the density gradient. This can occur due to a difference in the phase of tidal currents in each channel. In San Francisco Bay, the phasing of the currents at the junction of Mare Island Strait and Carquinez Strait produces a local salinity minimum in Mare Island Strait. At the location of a local salinity minimum the longitudinal density gradient reverses direction. This paper presents four numerical models that were used to investigate the circulation caused by the salinity minimum: (1 A simple one-dimensional (1D finite difference model demonstrates that a local salinity minimum is advected into Mare Island Strait from the junction with Carquinez Strait during flood tide. (2 A three-dimensional (3D hydrodynamic finite element model is used to compute the tidally averaged circulation in a channel that contains a salinity minimum (a change in the sign of the longitudinal density gradient and compares that to a channel that contains a longitudinal density gradient in a constant direction. The tidally averaged circulation produced by the salinity minimum is characterized by converging flow at the bed and diverging flow at the surface, whereas the circulation produced by the constant direction gradient is characterized by converging flow at the bed and downstream surface currents. These velocity fields are used to drive both a particle tracking and a sediment transport model. (3 A particle tracking model demonstrates a 30 percent increase in the residence time of neutrally buoyant particles transported through the salinity minimum, as compared to

Joint inversion of geophysical and hydrological data for improved subsurface characterization

International Nuclear Information System (INIS)

Kowalsky, Michael B.; Chen, Jinsong; Hubbard, Susan S.

2006-01-01

Understanding fluid distribution and movement in the subsurface is critical for a variety of subsurface applications, such as remediation of environmental contaminants, sequestration of nuclear waste and CO2, intrusion of saline water into fresh water aquifers, and the production of oil and gas. It is well recognized that characterizing the properties that control fluids in the subsurface with the accuracy and spatial coverage needed to parameterize flow and transport models is challenging using conventional borehole data alone. Integration of conventional borehole data with more spatially extensive geophysical data (obtained from the surface, between boreholes, and from surface to boreholes) shows promise for providing quantitative information about subsurface properties and processes. Typically, estimation of subsurface properties involves a two-step procedure in which geophysical data are first inverted and then integrated with direct measurements and petrophysical relationship information to estimate hydrological parameters. However, errors inherent to geophysical data acquisition and inversion approaches and errors associated with petrophysical relationships can decrease the value of geophysical data in the estimation procedure. In this paper, we illustrate using two examples how joint inversion approaches, or simultaneous inversion of geophysical and hydrological data, offer great potential for overcoming some of these limitations

Deep subsurface life from North Pond: enrichment, isolation, characterization and genomes of heterotrophic bacteria

Directory of Open Access Journals (Sweden)

Joseph A. Russell

2016-05-01

Full Text Available Studies of subsurface microorganisms have yielded few environmentally relevant isolates for laboratory studies. In order to address this lack of cultivated microorganisms, we initiated several enrichments on sediment and underlying basalt samples from North Pond, a sediment basin ringed by basalt outcrops underlying an oligotrophic water-column west of the Mid-Atlantic Ridge at 22°N. In contrast to anoxic enrichments, growth was observed in aerobic, heterotrophic enrichments from sediment of IODP site U1382B at 4 and 68 meters below seafloor (mbsf. These sediment depths, respectively, correspond to the fringes of oxygen penetration from overlying seawater in the top of the sediment column and upward migration of oxygen from oxic seawater from the basalt aquifer below the sediment. Here we report the enrichment, isolation, and initial characterizations of three isolated aerobic heterotrophs from North Pond sediments; an Arthrobacter species from 4 mbsf, and Paracoccus and Pseudomonas species from 68 mbsf. These cultivated bacteria are represented in the amplicon 16S rRNA gene libraries created from whole sediments, albeit at low (up to 2% relative abundance. We provide genomic evidence from our isolates demonstrating that the Arthrobacter and Pseudomonas isolates have the potential to respire nitrate and oxygen, though dissimilatory nitrate reduction could not be confirmed in laboratory cultures. The cultures from this study represent members of environmentally significant phyla, and allow for further studies into geochemical factors impacting life in the deep subsurface.

Deep Subsurface Life from North Pond: Enrichment, Isolation, Characterization and Genomes of Heterotrophic Bacteria.

Science.gov (United States)

Russell, Joseph A; León-Zayas, Rosa; Wrighton, Kelly; Biddle, Jennifer F

2016-01-01

Studies of subsurface microorganisms have yielded few environmentally relevant isolates for laboratory studies. In order to address this lack of cultivated microorganisms, we initiated several enrichments on sediment and underlying basalt samples from North Pond, a sediment basin ringed by basalt outcrops underlying an oligotrophic water-column west of the Mid-Atlantic Ridge at 22°N. In contrast to anoxic enrichments, growth was observed in aerobic, heterotrophic enrichments from sediment of IODP Hole U1382B at 4 and 68 m below seafloor (mbsf). These sediment depths, respectively, correspond to the fringes of oxygen penetration from overlying seawater in the top of the sediment column and upward migration of oxygen from oxic seawater from the basalt aquifer below the sediment. Here we report the enrichment, isolation, initial characterization and genomes of three isolated aerobic heterotrophs from North Pond sediments; an Arthrobacter species from 4 mbsf, and Paracoccus and Pseudomonas species from 68 mbsf. These cultivated bacteria are represented in the amplicon 16S rRNA gene libraries created from whole sediments, albeit at low (up to 2%) relative abundance. We provide genomic evidence from our isolates demonstrating that the Arthrobacter and Pseudomonas isolates have the potential to respire nitrate and oxygen, though dissimilatory nitrate reduction could not be confirmed in laboratory cultures. The cultures from this study represent members of abundant phyla, as determined by amplicon sequencing of environmental DNA extracts, and allow for further studies into geochemical factors impacting life in the deep subsurface.

Characterization and modeling of sediment settling, consolidation, and suspension to optimize coastal Louisiana restoration

Science.gov (United States)

Sha, X.; Xu, K.; Bentley, S. J.; Robichaux, P. A.

2018-04-01

Many research efforts have been undertaken over many decades in the field of Louisiana coastal restoration, but long-term experiments for sediment suspension and consolidation in diversion-receiving basins are still limited, despite significance of this topic to ongoing restoration strategies. Sediment samples were collected from two active diversions on the Mississippi River: West Bay, a semi-enclosed bay located on the Mississippi River Delta and fed by the West Bay Diversion, and from Big Mar pond, a receiving basin of the Caernarvon freshwater diversion from the lower Mississippi River, Louisiana, USA. A dual-core Gust Erosion Microcosm System was used to measure time-series (0.5, 1, 2, 3, 4, 5, and 6-months after initial settling) erodibility at seven shear stress regimes (0.01-0.60 Pa) using experimental cores prepared with two initial sediment concentrations (60 and 120 kg m-3). A 230-cm tall settling column with nine sampling ports was used to measure the consolidation rates for initial sediment concentrations ranging from fluid mud (10 kg m-3) to dredge effluent (120 kg m-3), in combination with two levels of salinity (1 and 5). The erodibility of West Bay sediment decreased with increasing time of consolidation. The critical shear stress for resuspension increased from 0.2 Pa after 2 months to 0.45 Pa after 4 months of consolidation. The consolidation rates were inversely and exponentially related to initial sediment concentrations. Consolidation tests in salinity of 1 generally settled faster than that in salinity of 5, and consolidation tests with low sediment concentration tests generally settled faster than high-concentration tests. An exponential coefficient was added in the Sanford (2008) model to better predict the consolidation profile of both rapid early settling and slow self-weight consolidation processes. Our study suggests that enclosed basin, low salinity, relatively low sediment concentration and minimized disturbance for 4 months all favor

Microbial bioavailability regulates organic matter preservation in marine sediments

NARCIS (Netherlands)

Koho, K. A.; Nierop, K. G. J.; Moodley, L.; Middelburg, J. J.; Pozzato, L.; Soetaert, K.; van der Plicht, J.; Reichart, G-J.; Herndl, G.

2013-01-01

Burial of organic matter (OM) plays an important role in marine sediments, linking the short-term, biological carbon cycle with the long-term, geological subsurface cycle. It is well established that low-oxygen conditions promote organic carbon burial in marine sediments. However, the mechanism

Identification of the microbes mediating Fe reduction in a deep saline aquifer and their influence during managed aquifer recharge.

Science.gov (United States)

Ko, Myoung-Soo; Cho, Kyungjin; Jeong, Dawoon; Lee, Seunghak

2016-03-01

In this study, indigenous microbes enabling Fe reduction under saline groundwater conditions were identified, and their potential contribution to Fe release from aquifer sediments during managed aquifer recharge (MAR) was evaluated. Sediment and groundwater samples were collected from a MAR feasibility test site in Korea, where adjacent river water will be injected into the confined aquifer. The residual groundwater had a high salinity over 26.0 psu, as well as strong reducing conditions (dissolved oxygen, DOaquifer were found to be Citrobacter sp. However, column experiments to simulate field operation scenarios indicated that additional Fe release would be limited during MAR, as the dominant microbial community in the sediment would shift from Citrobacter sp. to Pseudomonas sp. and Limnohabitans sp. as river water injection alters the pore water chemistry. Copyright © 2015 Elsevier B.V. All rights reserved.

In-Well Sediment Incubators to Evaluate Microbial Community Stability and Dynamics following Bioimmobilization of Uranium

International Nuclear Information System (INIS)

Baldwin, Brett R.; Peacock, Aaron D.; Gan, M.; Resch, Charles T.; Arntzen, Evan V.; Smithgall, A.N.; Pfiffner, S.; Freifeld, Barry M.; White, D.C.; Long, Philip E.

2009-01-01

An in-situ incubation device (ISI) was developed in order to investigate the stability and dynamics of sediment associated microbial communities to prevailing subsurface oxidizing or reducing conditions. Here we describe the use of these devices at the Old Rifle Uranium Mill Tailings Remedial Action (UMTRA) site. During the 7 month deployment oxidized Rifle aquifer background sediments (RABS) were deployed in previously biostimulated wells under iron reducing conditions, cell densities of known iron reducing bacteria including Geobacteraceae increased significantly showing the microbial community response to local subsurface conditions. PLFA profiles of RABS following in situ deployment were strikingly similar to those of adjacent sediment cores suggesting ISI results could be extrapolated to the native material of the test plots. Results for ISI deployed reduced sediments showed only slight changes in community composition and pointed toward the ability of the ISIs to monitor microbial community stability and response to subsurface conditions.

Physiologically anaerobic microorganisms of the deep subsurface

International Nuclear Information System (INIS)

Stevens, S.E. Jr.; Chung, K.T.

1993-10-01

Anaerobic bacteria were isolated from deep subsurface sediment samples taken at study sites in Idaho (INEL) and Washington (HR) by culturing on dilute and concentrated medium. Morphologically distinct colonies were purified, and their responses to 21 selected physiological tests were determined. Although the number of isolates was small (18 INEL, 27 HR) some general patterns could be determined. Most strains could utilize all the carbon sources, however the glycerol and melizitose utilization was positive for 50% or less of the HR isolates. Catalase activity (27.78% at INEL, 74.07% at HR) and tryptophan metabolism (11.12% at INEL, 40.74% at HR) were significantly different between the two study sites. MPN and viable counts indicate that sediments near the water table yield the greatest numbers of anaerobes. Deeper sediments also appear to be more selective with the greatest number of viable counts on low-nutrient mediums. Likewise, only strictly obligate anaerobes were found in the deepest sediment samples. Selective media indicated the presence of methanogens, acetogens, and sulfate reducers at only the HR site

Episodic Salinization of Urban Rivers: Potential Impacts on Carbon, Cation, and Nutrient Fluxes

Science.gov (United States)

Haq, S.; Kaushal, S.

2017-12-01

Human dominated watersheds are subjected to an array of salt inputs (e.g. road salts), and in urban areas, infrastructure and impervious surfaces quickly drain applied road salts into the river channel. As a result, many streams experience episodic salinization over the course of hours to days following a snow event (e.g. road salt pulse), and long-term salinization over the course of seasons to decades. Salinization of streams can release contaminants (e.g. heavy metals), reduce biodiversity, and degrade drinking water quality. We investigated the water quality effects of episodic salinization in urban streams. Sediment and streamwater were incubated from twelve sites in the Baltimore-Washington Metropolitan Area under a range of sodium chloride treatments in a lab environment to mimic a vertical stream column with a sediment-water interface undergoing episodic salinization, and to characterize relationships between experimental salinization and nutrient/cation fluxes. Eight sites (Baltimore) exhibit a land use gradient and are routinely monitored within the Baltimore Ecosystem Study LTER project, and four sites (Washington DC) are suburban and offer a contrasting lithology and physiographic province. Our research suggests that salinization can mobilize total dissolved nitrogen, soluble reactive phosphorous, and base cations; potentially due to coupled biotic-abiotic processes, such as ion exchange, rapid nitrification, pH changes, and chloride-organic matter dispersal. The impact of salinization on dissolved inorganic and organic carbon varied between sites, potentially due to sediment composition, organic matter content, and ambient water quality. We contrasted the experimental results with measurements of salinization (specific conductance) and nutrients (nitrate) from real-time sensors operated by the US Geological Survey that encompass the same watersheds as our experimental sites. Sensor data was analyzed to provide insight on the timescales of salinity

A Review of distribution and quantity of lingering subsurface oil from the Exxon Valdez Oil Spill

Science.gov (United States)

Nixon, Zachary; Michel, Jacqueline

2018-01-01

Remaining lingering subsurface oil residues from the Exxon Valdez oil spill (EVOS) are, at present, patchily distributed across the geologically complex and spatially extensive shorelines of Prince William Sound and the Gulf of Alaska. We review and synthesize previous literature describing the causal geomorphic and physical mechanisms for persistence of oil in the intertidal subsurface sediments of these areas. We also summarize previous sampling and modeling efforts, and refine previously presented models with additional data to characterize the present-day linear and areal spatial extent, and quantity of lingering subsurface oil. In the weeks after the spill in March of 1989, approximately 17,750 t of oil were stranded along impacted shorelines, and by October of 1992, only 2% of the mass of spilled oil was estimated to remain in intertidal areas. We estimate that lingering subsurface residues, generally between 5 and 20 cm thick and sequestered below 10-20 cm of clean sediment, are present over 30 ha of intertidal area, along 11.4 km of shoreline, and represent approximately 227 t or 0.6% of the total mass of spilled oil. These residues are typically located in finer-grained sand and gravel sediments, often under an armor of cobble- or boulder-sized clasts, in areas with limited groundwater flow and porosity. Persistence of these residues is correlated with heavy initial oil loading together with localized sheltering from physical disturbance such as wave energy within the beach face. While no longer generally bioavailable and increasingly chemically weathered, present removal rates for these remaining subsurface oil residues have slowed to nearly zero. The only remaining plausible removal mechanisms will operate over time scales of decades.

Estimation of Recharge from Long-Term Monitoring of Saline Tracer Transport Using Electrical Resistivity Tomography

DEFF Research Database (Denmark)

Haarder, Eline Bojsen; Jensen, Karsten Høgh; Binley, Andrew

2015-01-01

The movement of a saline tracer added to the soil surface was monitored in the unsaturated zone using cross-borehole electrical resistivity tomography (ERT) and subjected to natural rainfall conditions. The ERT data were inverted and corrected for subsurface temperature changes, and spatial moment...... methods. In September 2011, a saline tracer was added across a 142-m2 area at the surface at an application rate mimicking natural infiltration. The movement of the saline tracer front was monitored using cross-borehole electrical resistivity tomography (ERT); data were collected on a daily to weekly...

Origin and geochemistry of saline spring waters in the Athabasca oil sands region, Alberta, Canada

International Nuclear Information System (INIS)

Gue, Anita E.; Mayer, Bernhard; Grasby, Stephen E.

2015-01-01

Highlights: • Saline groundwater enters the Athabasca and Clearwater rivers in the AOSR via springs. • High TDS is due to subsurface dissolution of Devonian evaporites and carbonates. • Low δ 18 O values, and 3 H and 14 C data suggest some Laurentide glacial meltwater input. • Bacterial sulfate reduction, methanogenesis, and CH 4 oxidation were identified. • Metal and PAH contents are reported; bitumen does not appear to be major influence. - Abstract: The geochemistry of saline spring waters in the Athabasca oil sands region (AOSR) in Alberta (Canada) discharging from Devonian carbonate rocks into the Athabasca and Clearwater rivers was characterized for major ions, trace elements, dissolved gases, and polycyclic aromatic hydrocarbons (PAHs). In addition, stable isotope analyses of H 2 O, SO 4 , dissolved inorganic carbon (DIC), Sr, and CH 4 were used to trace the sources of spring waters and their dissolved solutes, and to identify subsurface processes affecting water chemistry. The spring waters had δ 18 O values as low as −23.5‰, suggesting they are composed of up to 75% Laurentide glacial meltwater. Tritium and radiocarbon age-dating results, analyzed for three spring waters, supported a glacial origin. The high salinity of the spring waters (TDS 7210–51,800 mg/L) was due to dissolution of Devonian evaporite and carbonate deposits in the subsurface. Spring waters were affected by bacterial (dissimilatory) sulfate reduction, methanogenesis, and methane oxidation. Trace elements were present in spring waters at varying concentrations, with only one spring containing several predominant oil sands metals (As, Fe, Mo, Ni, Se, Zn) suggesting bitumen as a source. Five springs contained elements (Al, As, B, Fe, Se) at concentrations exceeding water quality guidelines for the protection of aquatic life. Seven PAHs were detected in spring waters (total PAH concentrations ranged from 7.3 to 273.6 ng/L), but most springs contained a maximum of two PAHs

Improved understanding of tributyltin sorption on natural and biochar-amended sediments.

Science.gov (United States)

Xiao, Xiaoyu; Sheng, G Daniel; Qiu, Yuping

2011-12-01

A poor understanding of tributyltin (TBT) sorption on sediments has hindered an accurate evaluation of its environmental fate. The present study determined TBT sorption by a freshwater sediment (BH) and a coastal marine sediment (TZ) as influenced by pH, salinity, and biochar (BC) amendment into TZ. The isotherms were essentially linear, with K(OC) values in the range of 10(4) to 10(5) L/kg. Tributyltin sorption at pH 3.56 and 8.00 occurred mainly via partitioning. It reached maxima at pH equal to its pK(a) (=6.25) because of added ion exchange. A salinity increase from 5 to 35 practical salinity units enhanced TBT sorption at pH 3.56 and 8.00 on TZ by approximately 30% and on BH by approximately 80%, ascribed to the salting-out effect that reduced the solubilities of tributyltin hydroxide (TBTOH) and tributyltin chloride (TBTCl). At pH 6.25, the same salinity increase reduced TBT sorption on TZ by approximately 20% but enhanced TBT sorption on BH by approximately 35%. This was attributed to the enhancing role of salting out and the reducing role of metal competition for ion exchange. Tributyltin was two orders of magnitude more effectively sorbed by BC than by total organic carbon of TZ, mainly because of the high level of surface area of the BC. Although BC affinity for TBT may be significantly diminished when present in TZ, it was considered to be the primary contributor to TBT sorption from water. Biochar may thus be used to immobilize TBT in sediment for potential remediation. Copyright © 2011 SETAC.

Microbiological monitoring of carbon dioxide storage in a subsurface saline aquifer in Ketzin/Germany within the scope of CO2SINK

Science.gov (United States)

Wandrey, M.; Morozova, D.; Zemke, K.; Lerm, S.; Scherf, A.-K.; Vieth, A.; Würdemann, H.; Co2SINK Group

2009-04-01

Within the scope of the EU project CO2SINK (www.co2sink.org) a research facility in Ketzin (Germany, west of Berlin) is operated to store CO2 in a saline subsurface aquifer (Würdemann et al., EGU General Assembly 2009). In order to examine the influence of CO2 storage on the environment a comprehensive monitoring program is applied at this site including molecular and microbiological investigations. With the injection of CO2 into the geological formation chemical and physical reservoir characteristics are changed. This may influence the composition and activities of the deep biosphere at the storage horizon. Mineral precipitation, dissolution and corrosion of reservoir casing may be consequences, influencing permeability and long-term stability of the reservoir. The objective of the microbial monitoring program is the characterisation of the microbial community (biocenosis) in fluid samples, as well as in samples from reservoir and cap rock before and during CO2storage using molecular biological methods. 16S rRNA taxonomic studies, Fluorescence in situ hybridisation (FISH), and RealTime PCR are used to examine the composition of the biocenosis. First results of fluid sampling revealed that the microbial community of the saline aquifer is dominated by haloalkaliphilic fermentative bacteria and extremophilic organisms, coinciding with reduced conditions, high salinity and pressure. RealTime RT-PCR of selected genes and the creation and analysis of cDNA libraries will allow the prediction of microbial metabolic activities. In addition, the analysis of organic and inorganic components of the samples will add to the knowledge of possible metabolic shifts during CO2 storage. In order to simulate the storage conditions in situ, long term laboratory experiments in high pressure incubators have been set up using original rock cores from Ketzin. Since DNA and RNA analysis techniques are very sensitive, contamination entries from the adjacent environment have to be excluded

Subsurface pH and carbonate saturation state of aragonite on the Chinese side of the North Yellow Sea: seasonal variations and controls

Science.gov (United States)

Zhai, W.-D.; Zheng, N.; Huo, C.; Xu, Y.; Zhao, H.-D.; Li, Y.-W.; Zang, K.-P.; Wang, J.-Y.; Xu, X.-M.

2014-02-01

Based upon eight field surveys conducted between May 2011 and May 2012, we investigated seasonal variations in pH, carbonate saturation state of aragonite (Ωarag), and ancillary data on the Chinese side of the North Yellow Sea, a western North Pacific continental margin of major economic importance. Subsurface waters were CO2-undersaturated in May and nearly in equilibrium with atmospheric CO2 in June. From July to October, the fugacity of CO2 (fCO2) of bottom water gradually increased from 438 ± 44 μatm to 630 ± 84 μatm, and pHT decreased from 8.02 ± 0.04 to 7.88 ± 0.06 due to local aerobic remineralization of primary-production-induced biogenic particles. The subsurface community respiration rates in summer and autumn were estimated to be from 0.80 to 1.08 μmol-O2 kg-1 d-1 within a relatively high salinity range of 31.63 to 32.25. From November to May in the next year, however, subsurface fCO2 gradually decreased and pH increased due to cooling and water column ventilation. The corresponding bottom water Ωarag was 1.85 ± 0.21 (May), 1.79 ± 0.24 (June), 1.75 ± 0.27 (July), 1.76 ± 0.29 (August), 1.45 ± 0.31 (October), 1.52 ± 0.25 (November), and 1.41 ± 0.12 (January). Extremely low Ωarag values (from 1.13 to 1.40) were observed mainly in subsurface waters within the high salinity range of 31.63 to 32.25, which covered a major fraction of the study area in October and November. Of the China seas, the North Yellow Sea represents one of the systems most vulnerable to the potential negative effects of ocean acidification.

Gene expression correlates with process rates quantified for sulfate- and Fe(III-reducing bacteria in U(VI-contaminated sediments

Directory of Open Access Journals (Sweden)

Denise M Akob

2012-08-01

Full Text Available Though iron- and sulfate-reducing bacteria are well known for mediating uranium(VI reduction in contaminated subsurface environments, quantifying the in situ activity of the microbial groups responsible remains a challenge. The objective of this study was to demonstrate the use of quantitative molecular tools that target mRNA transcripts of key genes related to Fe(III and sulfate reduction pathways in order to monitor these processes during in situ U(VI remediation in the subsurface. Expression of the Geobacteraceae-specific citrate synthase gene (gltA and the dissimilatory (bisulfite reductase gene (dsrA, were correlated with the activity of iron- or sulfate-reducing microorganisms, respectively, under stimulated bioremediation conditions in microcosms of sediments sampled from the U.S. Department of Energy’s Oak Ridge Integrated Field Research Challenge (OR-IFRC site at Oak Ridge, Tennessee. In addition, Geobacteraceae-specific gltA and dsrA transcript levels were determined in parallel with the predominant electron acceptors present in moderately and highly contaminated subsurface sediments from the OR-IFRC. Phylogenetic analysis of the cDNA generated from dsrA mRNA, sulfate-reducing bacteria-specific 16S rRNA, and gltA mRNA identified activity of specific microbial groups. Active sulfate reducers were members of the Desulfovibrio, Desulfobacterium, and Desulfotomaculum genera. Members of the subsurface Geobacter clade, closely related to uranium-reducing Geobacter uraniireducens and Geobacter daltonii, were the metabolically-active iron-reducers in biostimulated microcosms and in situ core samples. Direct correlation of transcripts and process rates demonstrated evidence of competition between the functional guilds in subsurface sediments. We further showed that active populations of Fe(III-reducing bacteria and sulfate-reducing bacteria are present in OR-IFRC sediments and are good potential targets for in situ bioremediation.

High pressure-elevated temperature x-ray micro-computed tomography for subsurface applications.

Science.gov (United States)

Iglauer, Stefan; Lebedev, Maxim

2018-06-01

Physical, chemical and mechanical pore-scale (i.e. micrometer-scale) mechanisms in rock are of key importance in many, if not all, subsurface processes. These processes are highly relevant in various applications, e.g. hydrocarbon recovery, CO 2 geo-sequestration, geophysical exploration, water production, geothermal energy production, or the prediction of the location of valuable hydrothermal deposits. Typical examples are multi-phase flow (e.g. oil and water) displacements driven by buoyancy, viscous or capillary forces, mineral-fluid interactions (e.g. mineral dissolution and/or precipitation over geological times), geo-mechanical rock behaviour (e.g. rock compaction during diagenesis) or fines migration during water production, which can dramatically reduce reservoir permeability (and thus reservoir performance). All above examples are 3D processes, and 2D experiments (as traditionally done for micro-scale investigations) will thus only provide qualitative information; for instance the percolation threshold is much lower in 3D than in 2D. However, with the advent of x-ray micro-computed tomography (μCT) - which is now routinely used - this limitation has been overcome, and such pore-scale processes can be observed in 3D at micrometer-scale. A serious complication is, however, the fact that in the subsurface high pressures and elevated temperatures (HPET) prevail, due to the hydrostatic and geothermal gradients imposed upon it. Such HPET-reservoir conditions significantly change the above mentioned physical and chemical processes, e.g. gas density is much higher at high pressure, which strongly affects buoyancy and wettability and thus gas distributions in the subsurface; or chemical reactions are significantly accelerated at increased temperature, strongly affecting fluid-rock interactions and thus diagenesis and deposition of valuable minerals. It is thus necessary to apply HPET conditions to the aforementioned μCT experiments, to be able to mimic subsurface

Assessing the High Temperature, High Pressure Subsurface for Anaerobic Methane Oxidation

Science.gov (United States)

Harris, R. L.; Bartlett, D.; Byrnes, A. W.; Walsh, K. M.; Lau, C. Y. M.; Onstott, T. C.

2017-12-01

The anaerobic oxidation of methane (AOM) is an important sink in the global methane (CH4) budget. ANMEs are known to oxidize CH4 either independently or in consortia with bacteria, coupling the reduction of electron acceptors such as, SO42-, NO2-, NO3-, Mn4+, or Fe3+. To further constrain the contribution of AOM to the global CH4 budget, it is important to assess unexplored environments where AOM is thermodynamically possible such as the high pressure, high temperature deep biosphere. Provided plausible electron acceptor availability, increased temperature and pCH4 yield favorable Gibbs free energies for AOM reactions and the production of ATP (Fig. 1). To date, only sulfate-dependent AOM metabolism has been documented under high temperature conditions (50-72˚C), and AOM has not been assessed above 10.1 MPa. Given that ANMEs share close phylogenetic and metabolic heritage with methanogens and that the most heat-tolerant microorganism known is a barophilic methanogen, there possibly exist thermophilic ANMEs. Here we describe preliminary results from high pressure, high temperature stable isotope tracer incubation experiments on deep biosphere samples. Deep sub-seafloor sediments collected by IODP 370 from the Nankai Trough (257 - 865 m below seafloor) and deep fracture fluid from South Africa (1339 m below land surface) were incubated anaerobically in hydrostatic pressure vessels at 40 MPa in simulated in situ temperatures (40˚ - 80˚C). Sediments and fracture fluid were incubated in sulfate-free artificial seawater, a 2:98 13CH4:N2 headspace, and treated with one of the potential electron acceptors listed above in addition to kill and endogenous activity (i.e. no added electron acceptor) controls. Stable isotope analysis of dissolved inorganic carbon (DIC) suggests that AOM occurred within 60 days of incubation for all investigated electron acceptors and temperatures except 50˚C. Sulfate-dependent AOM rates are consistent with those previously reported in the

Mobility of trace metals associated with urban particles exposed to natural waters of various salinities from the Gironde Estuary, France

Energy Technology Data Exchange (ETDEWEB)

Schaefer, Joerg; Blanc, Gerard [Bordeaux Univ., Talence (France). UMR 5805 EPOC; Norra, Stefan [Karlsruhe Univ. (Germany). Inst. of Mineralogy and Geochemistry; Klein, Daniel [Bordeaux Univ., Talence (France). UMR 5805 EPOC; Karlsruhe Univ. (Germany). Inst. of Mineralogy and Geochemistry

2009-08-15

extracted by means of concentrated HNO{sub 3}, estuarine freshwaters and waters of two different salinities (S=15 and S=31). Analysis of trace elements was carried out by means of quadrupole inductively coupled plasma-mass spectrometry. Furthermore, single particles from road sediments were characterised with scanning electron microscopy (SEM). Results: SEM analysis clearly showed that some particles contained fairly high concentrations of potentially toxic trace elements. Extractions of materials investigated by varying acidities and salinities documented that the potentially bioavailable fractions extracted by concentrated HNO{sub 3} may cover wide concentration ranges. Natural estuarine waters of various salinities (S=0.5; S=15; S=31) extracted high proportions of Co, Ni, Cu, Zn and Cd from urban particles, especially for high-salinity water (S=31). Extractions with freshwater revealed the lowest concentrations of desorbed trace elements. Particulate Mo, Pb and V showed similar or lower mobility in saline water compared with freshwater, depending on the sample type. Discussion: Trace element mobility in estuarine waters varied according to the type of urban particles and depended on salinity for Co, Ni, Cu, Zn and Cd. This is of high importance for towns located directly at the coast or for cities like Bordeaux, where water courses crossing the agglomerations are connected to saline water masses. Since trace elements desorbed from particles in saline waters may become highly bioavailable, they bear a potential risk for organisms. Comprehensive studies on the behaviour of urban particles in estuarine waters and the related potential environmental impact are still missing. Conclusions: Saline waters mobilise relatively high amounts of Co, Ni, Cu, Zn and Cd from urban particles suggesting considerable metal fluxes from riverine urban systems into coastal waters. Although estimates of trace metal inputs by urban bulk deposition (urban dust) and other types of urban particles

Virgibacillus ainsalahensis sp. nov., a Moderately Halophilic Bacterium Isolated from Sediment of a Saline Lake in South of Algeria.

Science.gov (United States)

Amziane, Meriam; Darenfed-Bouanane, Amel; Abderrahmani, Ahmed; Selama, Okba; Jouadi, Lydia; Cayol, Jean-Luc; Nateche, Farida; Fardeau, Marie-Laure

2017-02-01

A Gram-positive, moderately halophilic, endospore-forming bacterium, designated MerV T , was isolated from a sediment sample of a saline lake located in Ain Salah, south of Algeria. The cells were rod shaped and motile. Isolate MerV T grew at salinity interval of 0.5-25% NaCl (optimum, 5-10%), pH 6.0-12.0 (optimum, 8.0), and temperature between 10 and 40 °C (optimum, 30 °C).The polar lipids comprised diphosphatidylglycerol, phosphatidylglycerol, a glycolipid, a phospholipid, and two lipids, and MK-7 is the predominant menaquinone. The predominant cellular fatty acids were anteiso C 15:0 and anteiso C 17:0 . The DNA G+C content was 45.3 mol%. Phylogenetic analysis based on 16S rRNA gene sequence comparisons revealed that strain MerV T was most closely related to Virgibacillus halodenitrificans (gene sequence similarity of 97.0%). On the basis of phenotypic, chemotaxonomic properties, and phylogenetic analyses, strain MerV T (=DSM = 28944 T ) should be placed in the genus Virgibacillus as a novel species, for which the name Virgibacillus ainsalahensis is proposed.

Response of high yielding rice varieties to NaCl salinity in ...

African Journals Online (AJOL)

In order to find resistant varieties and study the reaction of some newly released high yielding varieties to different levels of salinity of irrigation water an experiment was conducted at the Rice Research Institute of Iran-Amol station in a greenhouse. Eight varieties, cultivated in pots, were tested with three levels of salinity (2, ...

Characterization and quantification of suspended sediment sources to the Manawatu River, New Zealand.

Science.gov (United States)

Vale, S S; Fuller, I C; Procter, J N; Basher, L R; Smith, I E

2016-02-01

Knowledge of sediment movement throughout a catchment environment is essential due to its influence on the character and form of our landscape relating to agricultural productivity and ecological health. Sediment fingerprinting is a well-used tool for evaluating sediment sources within a fluvial catchment but still faces areas of uncertainty for applications to large catchments that have a complex arrangement of sources. Sediment fingerprinting was applied to the Manawatu River Catchment to differentiate 8 geological and geomorphological sources. The source categories were Mudstone, Hill Subsurface, Hill Surface, Channel Bank, Mountain Range, Gravel Terrace, Loess and Limestone. Geochemical analysis was conducted using XRF and LA-ICP-MS. Geochemical concentrations were analysed using Discriminant Function Analysis and sediment un-mixing models. Two mixing models were used in conjunction with GRG non-linear and Evolutionary optimization methods for comparison. Discriminant Function Analysis required 16 variables to correctly classify 92.6% of sediment sources. Geological explanations were achieved for some of the variables selected, although there is a need for mineralogical information to confirm causes for the geochemical signatures. Consistent source estimates were achieved between models with optimization techniques providing globally optimal solutions for sediment quantification. Sediment sources was attributed primarily to Mudstone, ≈38-46%; followed by the Mountain Range, ≈15-18%; Hill Surface, ≈12-16%; Hill Subsurface, ≈9-11%; Loess, ≈9-15%; Gravel Terrace, ≈0-4%; Channel Bank, ≈0-5%; and Limestone, ≈0%. Sediment source apportionment fits with the conceptual understanding of the catchment which has recognized soft sedimentary mudstone to be highly susceptible to erosion. Inference of the processes responsible for sediment generation can be made for processes where there is a clear relationship with the geomorphology, but is problematic for

Saline systems of the Great Plains of western Canada: an overview of the limnogeology and paleolimnology

Science.gov (United States)

Last, William M; Ginn, Fawn M

2005-01-01

In much of the northern Great Plains, saline and hypersaline lacustrine brines are the only surface waters present. As a group, the lakes of this region are unique: there is no other area in the world that can match the concentration and diversity of saline lake environments exhibited in the prairie region of Canada and northern United States. The immense number of individual salt lakes and saline wetlands in this region of North America is staggering. Estimates vary from about one million to greater than 10 million, with densities in some areas being as high as 120 lakes/km2. Despite over a century of scientific investigation of these salt lakes, we have only in the last twenty years advanced far enough to appreciate the wide spectrum of lake types, water chemistries, and limnological processes that are operating in the modern settings. Hydrochemical data are available for about 800 of the lake brines in the region. Composition, textural, and geochemical information on the modern bottom sediments has been collected for just over 150 of these lakes. Characterization of the biological and ecological features of these lakes is based on even fewer investigations, and the stratigraphic records of only twenty basins have been examined. The lake waters show a considerable range in ionic composition and concentration. Early investigators, concentrating on the most saline brines, emphasized a strong predominance of Na+ and SO4-2 in the lakes. It is now realized, however, that not only is there a complete spectrum of salinities from less than 1 ppt TDS to nearly 400 ppt, but also virtually every water chemistry type is represented in lakes of the region. With such a vast array of compositions, it is difficult to generalize. Nonetheless, the paucity of Cl-rich lakes makes the northern Great Plains basins somewhat unusual compared with salt lakes in many other areas of the world (e.g., Australia, western United States). Compilations of the lake water chemistries show distinct

Deep subsurface drip irrigation using coal-bed sodic water: part II. geochemistry

Science.gov (United States)

Bern, Carleton R.; Breit, George N.; Healy, Richard W.; Zupancic, John W.

2013-01-01

Waters with low salinity and high sodium adsorption ratios (SARs) present a challenge to irrigation because they degrade soil structure and infiltration capacity. In the Powder River Basin of Wyoming, such low salinity (electrical conductivity, EC 2.1 mS cm-1) and high-SAR (54) waters are co-produced with coal-bed methane and some are used for subsurface drip irrigation(SDI). The SDI system studied mixes sulfuric acid with irrigation water and applies water year-round via drip tubing buried 92 cm deep. After six years of irrigation, SAR values between 0 and 30 cm depth (0.5-1.2) are only slightly increased over non-irrigated soils (0.1-0.5). Only 8-15% of added Na has accumulated above the drip tubing. Sodicity has increased in soil surrounding the drip tubing, and geochemical simulations show that two pathways can generate sodic conditions. In soil between 45-cm depth and the drip tubing, Na from the irrigation water accumulates as evapotranspiration concentrates solutes. SAR values >12, measured by 1:1 water-soil extracts, are caused by concentration of solutes by factors up to 13. Low-EC (-1) is caused by rain and snowmelt flushing the soil and displacing ions in soil solution. Soil below the drip tubing experiences lower solute concentration factors (1-1.65) due to excess irrigation water and also contains relatively abundant native gypsum (2.4 ± 1.7 wt.%). Geochemical simulations show gypsum dissolution decreases soil-water SAR to 14 and decreasing EC in soil water to 3.2 mS cm-1. Increased sodicity in the subsurface, rather than the surface, indicates that deep SDI can be a viable means of irrigating with sodic waters.

Record of carbonate preservation and the Mid-Brunhes climatic shift from a seamount top with low sedimentation rates in the Central Indian Basin

Digital Repository Service at National Institute of Oceanography (India)

Nath, B.N.; Sijinkumar, A.V.; Borole, D.V.; Gupta, S.M.; Mergulhao, L.P.; Mascarenhas-Pereira, M.B.L.; Ramaswamy, V.; Guptha, M.V.S.; Possnert, G.; Aldahan, A.; Khadge, N.H.; Sharma, R.

of chemical properties of the water column in the CIB show three equator-ward moving water masses (de Sousa et al. 2001). The fastest moving water mass with subsurface salinity is 3 maximum in the depth range 125-200 m, characterized by high salinity (34....74-34.77 psu) and oxygen minimum associated with weak maxima in nutrients. The second water mass with deep oxygen maximum (234-245 µm) is in the depth range of 250-750 m, which is associated with minima in nutrients and relatively high pH. The third water...

An Integrated Assessment of Geochemical and Community Structure Determinants of Metal Reduction Rates in Subsurface Sediments. Final report

International Nuclear Information System (INIS)

Pfiffner, Susan

2010-01-01

The objective of this research was to examine the importance of microbial community structure in influencing uranium reduction rates in subsurface sediments. If the redox state alone is the key to metal reduction, then any organisms that can utilize the oxygen and nitrate in the subsurface can change the geochemical conditions so metal reduction becomes an energetically favored reaction. Thus, community structure would not be critical in determining rates or extent of metal reduction unless community structure influenced the rate of change in redox. Alternatively, some microbes may directly catalyze metal reduction (e.g., specifically reduce U). In this case the composition of the community may be more important and specific types of electron donors may promote the production of communities that are more adept at U reduction. Our results helped determine if the type of electron donor or the preexisting community is important in the bioremediation of metal-contaminated environments subjected to biostimulation. In a series of experiments at the DOE FRC site in Oak Ridge we have consistently shown that all substrates promoted nitrate reduction, while glucose, ethanol, and acetate always promoted U reduction. Methanol only occasionally promoted extensive U reduction which is possibly due to community heterogeneity. There appeared to be limitations imposed on the community related to some substrates (e.g. methanol and pyruvate). Membrane lipid analyses (phospholipids and respiratory quinones) indicated different communities depending on electron donor used. Terminal restriction fragment length polymorphism and clone libraries indicated distinct differences among communities even in treatments that promoted U reduction. Thus, there was enough metabolic diversity to accommodate many different electron donors resulting in the U bioimmobilization.

Surficial sediments of the wave-dominated Orange River Delta and ...

African Journals Online (AJOL)

The textural and compositional characteristics of the surficial shelf sediments north and south of the Orange River Delta are reviewed and compared. Sediments are fractionated and dispersed both north- and southwards of the Orange River mouth by wave action, longshore drift and subsurface currents. The mean grain ...

Experimental Simulation of Methane Hydrate Extraction at High Pressure Conditions: Influence of the Sediment Bed

Science.gov (United States)

Agudo, J. R.; Park, J.; Luzi, G.; Williams, M.; Rauh, C.; Wierschem, A.; Delgado, A.

2017-10-01

Being a clean alternative to other fossil fuels, Methane Hydrate (MH) is currently considered as one of the most important potential sources for hydrocarbon fuels [1]. In addition, the high energy density of MH and its stability at higher temperatures as compared to LNG (Liquefied Natural Gas) makes MH a potential greener method for energy transportation. At the same time, the low thermodynamic stability of MH strongly questions the future exploitation of gas hydrate deposits, turning its extraction into a possible geohazard [2]. Fluctuations in pressure, temperature, salinity, degree of saturation or sediment bed properties may cause methane gas release from the water lattice. We experimentally study the influence of the sediment bed geometry during formation-dissociation of MH. For this purpose, MH is synthesized within regular substrates in a 93 cm3 high pressure vessel. The regular substrates are triangular and quadratic arrangements of identical glass spheres with a diameter of 2 and 5 mm, respectively. MH formation within regular substrate reduces the possibility of spontaneous nucleation to a unique geometrical configuration. This fact permits us to characterize the kinetics of MH formation-dissociation as a function of the sediment bed geometry. Preliminary experimental results reveal a strong dependence of MH formation on the geometry of the regular substrate. For instance, under the same pressure and temperature, the kinetics of MH production is found to change by a factor 3 solely depending on the substrate symmetry, i.e. triangular or quadratic.

Annual sediment flux estimates in a tidal strait using surrogate measurements

Science.gov (United States)

Ganju, N.K.; Schoellhamer, D.H.

2006-01-01

Annual suspended-sediment flux estimates through Carquinez Strait (the seaward boundary of Suisun Bay, California) are provided based on surrogate measurements for advective, dispersive, and Stokes drift flux. The surrogates are landward watershed discharge, suspended-sediment concentration at one location in the Strait, and the longitudinal salinity gradient. The first two surrogates substitute for tidally averaged discharge and velocity-weighted suspended-sediment concentration in the Strait, thereby providing advective flux estimates, while Stokes drift is estimated with suspended-sediment concentration alone. Dispersive flux is estimated using the product of longitudinal salinity gradient and the root-mean-square value of velocity-weighted suspended-sediment concentration as an added surrogate variable. Cross-sectional measurements validated the use of surrogates during the monitoring period. During high freshwater flow advective and dispersive flux were in the seaward direction, while landward dispersive flux dominated and advective flux approached zero during low freshwater flow. Stokes drift flux was consistently in the landward direction. Wetter than average years led to net export from Suisun Bay, while dry years led to net sediment import. Relatively low watershed sediment fluxes to Suisun Bay contribute to net export during the wet season, while gravitational circulation in Carquinez Strait and higher suspended-sediment concentrations in San Pablo Bay (seaward end of Carquinez Strait) are responsible for the net import of sediment during the dry season. Annual predictions of suspended-sediment fluxes, using these methods, will allow for a sediment budget for Suisun Bay, which has implications for marsh restoration and nutrient/contaminant transport. These methods also provide a general framework for estimating sediment fluxes in estuarine environments, where temporal and spatial variability of transport are large. ?? 2006 Elsevier Ltd. All rights

The Diffusive Boundary-Layer of Sediments - Oxygen Microgradients Over a Microbial Mat

DEFF Research Database (Denmark)

JØRGENSEN, BB; MARAIS, DJD

1990-01-01

Oxygen microelectrodes were used to analyze the distribution of the diffusive boundary layer (DBL) at the sedimen-water interface in relation to surface topography and flow velocity. The sediment, collected from saline ponds, was covered by a microbial mat that had high oxygen consumption rate...

[Limnology of high mountain tropical lake, in Ecuador: characteristics of sediments and rate of sedimentation].

Science.gov (United States)

Gunkel, Günter

2003-06-01

Equatorial high mountain lakes are a special type of lake occurring mainly in the South American Andes as well as in Central Africa and Asia. They occur at altitudes of a few thousand meters above sea level and are cold-water lakes (limnological study was therefore undertaken at Lake San Pablo, Ecuador, to analyze the basic limnological processes of the lake, which has a tendency for eutrophication. Sediment quality of San Pablo Lake is given under consideration of horizontal and vertical distribution using sediment cores. Significance of sediments for eutrophication process of lakes is demonstrated using phosphorus concentration of sediments as well as the phosphorus retention capacity of the sediments by ratio Fe/P. Dating of the sediments is done using 137Cs and 210Pb, but the activity of 137Cs in the sediment was very low nearly at the detection level. Sedimentation rate is determined to be 3.5 mm/year and the sediment cores represent about 110 years. P concentration of the sediments is high (approximately 5 g/kg dry substance), and P retention capacity by Fe is insufficient (Fe/P = 4). The sediment quality did not change significantly during the past decades, and the trophic state of San Pablo Lake was already less or more eutrophic 110 years ago. The contamination of the lake sediments by heavy metals is insignificant.

Transboundary geophysical mapping of geological elements and salinity distribution critical for the assessment of future sea water intrusion in response to sea level rise

Directory of Open Access Journals (Sweden)

F. Jørgensen

2012-07-01

Full Text Available Geophysical techniques are increasingly being used as tools for characterising the subsurface, and they are generally required to develop subsurface models that properly delineate the distribution of aquifers and aquitards, salt/freshwater interfaces, and geological structures that affect groundwater flow. In a study area covering 730 km² across the border between Germany and Denmark, a combination of an airborne electromagnetic survey (performed with the SkyTEM system, a high-resolution seismic survey and borehole logging has been used in an integrated mapping of important geological, physical and chemical features of the subsurface. The spacing between flight lines is 200–250 m which gives a total of about 3200 line km. About 38 km of seismic lines have been collected. Faults bordering a graben structure, buried tunnel valleys, glaciotectonic thrust complexes, marine clay units, and sand aquifers are all examples of geological structures mapped by the geophysical data that control groundwater flow and to some extent hydrochemistry. Additionally, the data provide an excellent picture of the salinity distribution in the area and thus provide important information on the salt/freshwater boundary and the chemical status of groundwater. Although the westernmost part of the study area along the North Sea coast is saturated with saline water and the TEM data therefore are strongly influenced by the increased electrical conductivity there, buried valleys and other geological elements are still revealed. The mapped salinity distribution indicates preferential flow paths through and along specific geological structures within the area. The effects of a future sea level rise on the groundwater system and groundwater chemistry are discussed with special emphasis on the importance of knowing the existence, distribution and geometry of the mapped geological elements, and their control on the groundwater salinity distribution is assessed.

Cadmium distribution in coastal sediments and mollusks of the US

International Nuclear Information System (INIS)

Apeti, Dennis A.; Lauenstein, Gunnar G.; Riedel, Gerhardt F.

2009-01-01

Cadmium (Cd) concentrations in the coastal United States were assessed using the National Status and Trends (NS and T) Mussel Watch dataset, which is based on the analysis of sediments and bivalves collected from 280 sites since 1986. Using the 1997 sediment data, Pearson correlation (r = 0.44, p < 0.0001) suggested that Cd distributions in sediment can, be to some extent, explained by the proximity of sites to population centers. The 2003 tissue data indicated that 'high' Cd concentrations (greater than 5.6 μg/g dry weights [dw] for mussel and 5.4 μg/g dw for oysters) were related to salinity along the East and Gulf coasts. Along the West coast, however, these 'high' sites appeared to be related to upwelling phenomenon. Additionally, sedimentary diagenesis was found to be the most likely explanation of why sediment and mollusk Cd content were not well correlated.

Microbial diversity in the deep-subsurface hydrothermal aquifer feeding the giant gypsum crystal-bearing Naica mine, Mexico

Directory of Open Access Journals (Sweden)

Marie eRagon

2013-03-01

Full Text Available The Naica mine in Northern Mexico is famous for its giant gypsum crystals, which may reach up to 11 m long and contain fluid inclusions that might have captured microorganisms during their formation. These crystals formed under particularly stable geochemical conditions in cavities filled by low salinity hydrothermal water at 54-58°C. We have explored the microbial diversity associated to these deep, saline hydrothermal waters collected in the deepest (ca. 700-760 m mineshafts by amplifying, cloning and sequencing small-subunit ribosomal RNA genes using primers specific for archaea, bacteria and eukaryotes. Eukaryotes were not detectable in the samples and the prokaryotic diversity identified was very low. Two archaeal operational taxonomic units (OTUs were detected in one sample. They clustered with, respectively, basal Thaumarchaeota lineages and with a large clade of environmental sequences branching at the base of the Thermoplasmatales within the Euryarchaeota. Bacterial sequences belonged to the Candidate Division OP3, Firmicutes and the Alpha- and Beta-Proteobacteria. Most of the lineages detected appear autochthonous to the Naica system, since they had as closest representatives environmental sequences retrieved from deep sediments or the deep subsurface. In addition, the high GC content of 16S rRNA gene sequences belonging to the archaea and to some OP3 OTUs suggests that at least these lineages are thermophilic. Attempts to amplify diagnostic functional genes for methanogenesis (mcrA and sulfate reduction (dsrAB were unsuccessful, suggesting that those activities, if present, are not important in the aquifer. By contrast, genes encoding archaeal ammonium monooxygenase (AamoA were amplified, suggesting that Naica Thaumarchaeota are involved in nitrification. These organisms are likely thermophilic chemolithoautotrophs adapted to thrive in an extremely energy-limited environment.

Microbial diversity in the deep-subsurface hydrothermal aquifer feeding the giant gypsum crystal-bearing Naica Mine, Mexico

Science.gov (United States)

Ragon, Marie; Van Driessche, Alexander E. S.; García-Ruíz, Juan M.; Moreira, David; López-García, Purificación

2013-01-01

The Naica Mine in northern Mexico is famous for its giant gypsum crystals, which may reach up to 11 m long and contain fluid inclusions that might have captured microorganisms during their formation. These crystals formed under particularly stable geochemical conditions in cavities filled by low salinity hydrothermal water at 54–58°C. We have explored the microbial diversity associated to these deep, saline hydrothermal waters collected in the deepest (ca. 700–760 m) mineshafts by amplifying, cloning and sequencing small-subunit ribosomal RNA genes using primers specific for archaea, bacteria, and eukaryotes. Eukaryotes were not detectable in the samples and the prokaryotic diversity identified was very low. Two archaeal operational taxonomic units (OTUs) were detected in one sample. They clustered with, respectively, basal Thaumarchaeota lineages and with a large clade of environmental sequences branching at the base of the Thermoplasmatales within the Euryarchaeota. Bacterial sequences belonged to the Candidate Division OP3, Firmicutes and the Alpha- and Beta-proteobacteria. Most of the lineages detected appear autochthonous to the Naica system, since they had as closest representatives environmental sequences retrieved from deep sediments or the deep subsurface. In addition, the high GC content of 16S rRNA gene sequences belonging to the archaea and to some OP3 OTUs suggests that at least these lineages are thermophilic. Attempts to amplify diagnostic functional genes for methanogenesis (mcrA) and sulfate reduction (dsrAB) were unsuccessful, suggesting that those activities, if present, are not important in the aquifer. By contrast, genes encoding archaeal ammonium monooxygenase (AamoA) were amplified, suggesting that Naica Thaumarchaeota are involved in nitrification. These organisms are likely thermophilic chemolithoautotrophs adapted to thrive in an extremely energy-limited environment. PMID:23508882

Modelling souring in a high salinity reservoir

Energy Technology Data Exchange (ETDEWEB)

Adams, Michael; Crossland, Alan; Stott, Jim

2006-03-15

CAPCIS Ltd (Capcis) have developed a souring model for use in highly saline reservoirs where salinity limits the growth of sulphate reducing bacteria (SRB). Capcis have successfully applied the model to a field in North Africa. The conceptual basis of the model considers the course of the H2S from generation in the reservoir including dilution, sulphide retardation and scavenging and H2S fluid phase partitioning. At each stage mathematical equations governing the behaviour of the H2S were produced. In order to estimate the potential for H2S generation, it is required to know the chemistry of the injection and formation waters, as well as the properties of the indigenous SRB, i.e. the maximum salinity for their growth. This is determined by bottle testing of H2S generation by SRB at a range of injection/formation water ratios. The maximum salinity for SRB growth then determines the mixing ratios at which H2S generation takes place. Sulphide retardation due to adsorption at immobile interfaces was empirically modeled from reservoir data. Sulphide scavenging due to reaction with iron generated from corrosion was also modelled. Reservoir mineral scavenging was not modelled but could be incorporated in an extension to the model. Finally, in order to compute the gas-phase concentration of generated H2S, the H2S in the well stream is partitioned between the gas, oil and water phases. Capcis has carried out detailed computations of H2S solubility in crude oil and formation waters and the derivation of distribution ratios based on the respective partition coefficients using Gerard's line method, a modification of Henry's Law. (author) (tk)

Benthic solute exchange and carbon mineralization in two shallow subtidal sandy sediments: Effect of advective pore-water exchange

DEFF Research Database (Denmark)

Cook, Perran L. M.; Wenzhofer, Frank; Glud, Ronnie N.

2007-01-01

within the range measured in the chambers. The contribution of advection to solute exchange was highly variable and dependent on sediment topography. Advective processes also had a pronounced influence on the in situ distribution of O-2 within the sediment, with characteristic two-dimensional patterns...... of O-2 distribution across ripples, and also deep subsurface O-2 pools, being observed. Mineralization pathways were predominantly aerobic when benthic mineralization rates were low and advective pore-water flow high as a result of well-developed sediment topography. By contrast, mineralization...... proceeded predominantly through sulfate reduction when benthic mineralization rates were high and advective pore-water flow low as a result of poorly developed topography. Previous studies of benthic mineralization in shallow sandy sediments have generally ignored these dynamics and, hence, have overlooked...

Extraction of Seabed/Subsurface Features in a Potential CO2 Sequestration Site in the Southern Baltic Sea, Using Wavelet Transform of High-resolution Sub-Bottom Profiler Data

Science.gov (United States)

Tegowski, J.; Zajfert, G.

2014-12-01

Carbon Capture & Storage (CCS) efficiently prevents the release of anthropogenic CO2 into the atmosphere. We investigate a potential site in the Polish Sector of the Baltic Sea (B3 field site), consisting in a depleted oil and gas reservoir. An area ca. 30 x 8 km was surveyed along 138 acoustic transects, realised from R/V St. Barbara in 2012 and combining multibeam echosounder, sidescan sonar and sub-bottom profiler. Preparation of CCS sites requires accurate knowledge of the subsurface structure of the seafloor, in particular deposit compactness. Gas leaks in the water column were monitored, along with the structure of upper sediment layers. Our analyses show the shallow sub-seabed is layered, and quantified the spatial distribution of gas diffusion chimneys and seabed effusion craters. Remote detection of gas-containing surface sediments can be rather complex if bubbles are not emitted directly into the overlying water and thus detectable acoustically. The heterogeneity of gassy sediments makes conventional bottom sampling methods inefficient. Therefore, we propose a new approach to identification, mapping, and monitoring of potentially gassy surface sediments, based on wavelet analysis of echo signal envelopes of a chirp sub-bottom profiler (EdgeTech SB-0512). Each echo envelope was subjected to wavelet transformation, whose coefficients were used to calculate wavelet energies. The set of echo envelope parameters was input to fuzzy logic and c-means algorithms. The resulting classification highlights seafloor areas with different subsurface morphological features, which can indicate gassy sediments. This work has been conducted under EC FP7-CP-IP project No. 265847: Sub-seabed CO2 Storage: Impact on Marine Ecosystems (ECO2).

Denitrifying bacteria from the terrestrial subsurface exposed to mixed waste contamination

International Nuclear Information System (INIS)

Green, Stefan; Prakash, Om; Gihring, Thomas; Akob, Denise M.; Jasrotia, Puja; Jardine, Philip M.; Watson, David B.; Brown, Steven David; Palumbo, Anthony Vito; Kostka, Joel

2010-01-01

In terrestrial subsurface environments where nitrate is a critical groundwater contaminant, few cultivated representatives are available with which to verify the metabolism of organisms that catalyze denitrification. In this study, five species of denitrifying bacteria from three phyla were isolated from subsurface sediments exposed to metal radionuclide and nitrate contamination as part of the U.S. Department of Energy's Oak Ridge Integrated Field Research Challenge (OR-IFRC). Isolates belonged to the genera Afipia and Hyphomicrobium (Alphaproteobacteria), Rhodanobacter (Gammaproteobacteria), Intrasporangium (Actinobacteria) and Bacillus (Firmicutes). Isolates from the phylum Proteobacteria were confirmed as complete denitrifiers, whereas the Gram-positive isolates reduced nitrate to nitrous oxide. Ribosomal RNA gene analyses reveal that bacteria from the genus Rhodanobacter comprise a diverse population of circumneutral to moderately acidophilic denitrifiers at the ORIFRC site, with a high relative abundance in areas of the acidic source zone. Rhodanobacter species do not contain a periplasmic nitrite reductase and have not been previously detected in functional gene surveys of denitrifying bacteria at the OR-IFRC site. Sequences of nitrite and nitrous oxide reductase genes were recovered from the isolates and from the terrestrial subsurface by designing primer sets mined from genomic and metagenomic data and from draft genomes of two of the isolates. We demonstrate that a combination of cultivation, genomic and metagenomic data are essential to the in situ characterization of denitrifiers and that current PCR-based approaches are not suitable for deep coverage of denitrifying microorganisms. Our results indicate that the diversity of denitrifiers is significantly underestimated in the terrestrial subsurface.

COST EFFECTIVE AND HIGH RESOLUTION SUBSURFACE CHARACTERIZATION USING HYDRAULIC TOMOGRAPHY

Science.gov (United States)

2017-08-01

objective of this project is to provide the DoD and its remediation contractors with the HT technology for delineating the spatial distribution of...STATEMENT Approved for public release; distribution is unlimited 13. SUPPLEMENTARY NOTES 14. ABSTRACT Hydraulic Tomography ( HT ) is a high-resolution...performance of subsurface remedial actions at environmental sites. The good technical performance and cost-effectiveness of HT have been demonstrated in

78 FR 33282 - Endangered and Threatened Wildlife and Plants; Revision of Critical Habitat for Salt Creek Tiger...

Science.gov (United States)

2013-06-04

... negative impacts associated with sediment transport and freshwater dilution of salinity. Without adjacent... indefinitely (Harvey et al. 2007, p. 750). Subsurface geology, geomorphic features (including manmade features... management such as research, census, law enforcement, habitat acquisition and maintenance, propagation, live...

Saline water intrusion toward groundwater: Issues and its control

Directory of Open Access Journals (Sweden)

Purnama S

2012-10-01

Full Text Available Nowadays, saline water pollution has been gaining its importance as the major issue around the world, especially in the urban coastal area. Saline water pollution has major impact on human life and livelihood. It ́s mainly a result from static fossil water and the dynamics of sea water intrusion. The problem of saline water pollution caused by seawater intrusion has been increasing since the beginning of urban population. The problem of sea water intrusion in the urban coastal area must be anticipated as soon as possible especially in the urban areas developed in coastal zones,. This review article aims to; (i analyze the distribution of saline water pollution on urban coastal area in Indonesia and (ii analyze some methods in controlling saline water pollution, especially due to seawater intrusion in urban coastal area. The strength and weakness of each method have been compared, including (a applying different pumping patterns, (b artificial recharge, (c extraction barrier, (d injection barrier and (e subsurface barrier. The best method has been selected considering its possible development in coastal areas of developing countries. The review is based considering the location of Semarang coastal area, Indonesia. The results have shown that artificial recharge and extraction barrier are the most suitable methods to be applied in the area.

Factor-cluster analysis and enrichment study of Mangrove sediments - An example from Mengkabong, Sabah

International Nuclear Information System (INIS)

Praveena, S.M.; Ahmed, A.; Radojevic, M.; Mohd Harun Abdullah; Aris, A.Z.

2007-01-01

This paper examines the tidal effects in the sediment of Mengkabong mangrove forest, Sabah. Generally, all the studied parameters showed high value at high tide compared to low tide. Factor-cluster analyses were adopted to allow the identification of controlling factors at high and low tides. Factor analysis extracted six controlling factors at high tide and seven controlling factors at low tide. Cluster analysis extracted two district clusters at high and low tides. The study showed that factor-cluster analysis application is a useful tool to single out the controlling factors at high and low tides. this will provide a basis for describing the tidal effects in the mangrove sediment. The salinity and electrical conductivity clusters as well as component loadings at high and low tide explained the tidal process where there is high contribution of seawater to mangrove sediments that controls the sediment chemistry. The geo accumulation index (T geo ) values suggest the mangrove sediments are having background concentrations for Al, Cu, Fe and Zn and unpolluted for Pb. (author)

Oxidative dissolution potential of biogenic and abiogenic TcO2 in subsurface sediments

International Nuclear Information System (INIS)

Fredrickson, J.K.; Zachara, J.M.; Plymale, A.E.; Heald, S.M.; McKinley, J.P.; Kennedy, D.W.; Liu, C.; Nachimuthu, P.

2009-01-01

Technetium-99 (Tc) is an important fission product contaminant associated with sites of nuclear fuels reprocessing and geologic nuclear waste disposal. Tc is highly mobile in its most oxidized state (Tc(VII)O 4 - ) and less mobile in the reduced form (Tc(IV)O 2 · nH 2 O). Here we investigate the potential for oxidation of Tc(IV) that was heterogeneously reduced by reaction with biogenic Fe(II) in two sediments differing in mineralogy and aggregation state; unconsolidated Pliocene-age fluvial sediment from the upper Ringold (RG) Formation at the Hanford Site and a clay-rich saprolite from the Field Research Center (FRC) background site on the Oak Ridge Site. Both sediments contained Fe(III) and Mn(III/IV) as redox active phases, but FRC also contained mass-dominant Fe-phyllosilicates of different types. Shewanella putrefaciens CN32 reduced Mn(III/IV) oxides and generated Fe(II) that was reactive with Tc(VII) in heat-killed, bioreduced sediment. After bioreduction and heat-killing, biogenic Fe(II) in the FRC exceeded that in RG by a factor of two. More rapid reduction rates were observed in the RG that had lower biogenic Fe(II), and less particle aggregation. EXAFS measurements indicated that the primary reduction product was a TcO 2 -like phase in both sediments. The biogenic redox product Tc(IV) oxidized rapidly and completely in RG when contacted with air. Oxidation, in contrast, was slow and incomplete in the FRC, in spite of similar molecular scale speciation of Tc compared to RG. X-ray microprobe, electron microprobe, X-ray absorption spectroscopy, and micro X-ray diffraction were applied to the whole sediment and isolated Tc-containing particles. These analyses revealed that non-oxidizable Tc(IV) in the FRC existed as complexes with octahedral Fe(III) within intra-grain domains of 50-100 (micro)m-sized, Fe-containing micas presumptively identified as celadonite. The markedly slower oxidation rates in FRC as compared to RG were attributed to mass

Oxidative dissolution potential of biogenic and abiogenic TcO 2 in subsurface sediments

Science.gov (United States)

Fredrickson, James K.; Zachara, John M.; Plymale, Andrew E.; Heald, Steve M.; McKinley, James P.; Kennedy, David W.; Liu, Chongxuan; Nachimuthu, Ponnusamy

2009-04-01

Technetium-99 (Tc) is an important fission product contaminant associated with sites of nuclear fuels reprocessing and geologic nuclear waste disposal. Tc is highly mobile in its most oxidized state [Tc(VII)O4-] and less mobile in the reduced form [Tc(IV)O 2· nH 2O]. Here we investigate the potential for oxidation of Tc(IV) that was heterogeneously reduced by reaction with biogenic Fe(II) in two sediments differing in mineralogy and aggregation state; unconsolidated Pliocene-age fluvial sediment from the upper Ringold (RG) Formation at the Hanford Site and a clay-rich saprolite from the Field Research Center (FRC) background site on the Oak Ridge Site. Both sediments contained Fe(III) and Mn(III/IV) as redox active phases, but FRC also contained mass-dominant Fe-phyllosilicates of different types. Shewanella putrefaciens CN32 reduced Mn(III/IV) oxides and generated Fe(II) that was reactive with Tc(VII) in heat-killed, bioreduced sediment. After bioreduction and heat-killing, biogenic Fe(II) in the FRC exceeded that in RG by a factor of two. More rapid reduction rates were observed in the RG that had lower biogenic Fe(II), and less particle aggregation. EXAFS measurements indicated that the primary reduction product was a TcO 2-like phase in both sediments. The biogenic redox product Tc(IV) oxidized rapidly and completely in RG when contacted with air. Oxidation, in contrast, was slow and incomplete in the FRC, in spite of similar molecular scale speciation of Tc compared to RG. X-ray microprobe, electron microprobe, X-ray absorption spectroscopy, and micro X-ray diffraction were applied to the whole sediment and isolated Tc-containing particles. These analyses revealed that non-oxidizable Tc(IV) in the FRC existed as complexes with octahedral Fe(III) within intra-grain domains of 50-100 μm-sized, Fe-containing micas presumptively identified as celadonite. The markedly slower oxidation rates in FRC as compared to RG were attributed to mass

Drilling Automation Demonstrations in Subsurface Exploration for Astrobiology

Science.gov (United States)

Glass, Brian; Cannon, H.; Lee, P.; Hanagud, S.; Davis, K.

2006-01-01

This project proposes to study subsurface permafrost microbial habitats at a relevant Arctic Mars-analog site (Haughton Crater, Devon Island, Canada) while developing and maturing the subsurface drilling and drilling automation technologies that will be required by post-2010 missions. It builds on earlier drilling technology projects to add permafrost and ice-drilling capabilities to 5m with a lightweight drill that will be automatically monitored and controlled in-situ. Frozen cores obtained with this drill under sterilized protocols will be used in testing three hypotheses pertaining to near-surface physical geology and ground H2O ice distribution, viewed as a habitat for microbial life in subsurface ice and ice-consolidated sediments. Automation technologies employed will demonstrate hands-off diagnostics and drill control, using novel vibrational dynamical analysis methods and model-based reasoning to monitor and identify drilling fault states before and during faults. Three field deployments, to a Mars-analog site with frozen impact crater fallback breccia, will support science goals, provide a rigorous test of drilling automation and lightweight permafrost drilling, and leverage past experience with the field site s particular logistics.

A Review of Ocean/Sea Subsurface Water Temperature Studies from Remote Sensing and Non-Remote Sensing Methods

Directory of Open Access Journals (Sweden)

Elahe Akbari

2017-12-01

Full Text Available Oceans/Seas are important components of Earth that are affected by global warming and climate change. Recent studies have indicated that the deeper oceans are responsible for climate variability by changing the Earth’s ecosystem; therefore, assessing them has become more important. Remote sensing can provide sea surface data at high spatial/temporal resolution and with large spatial coverage, which allows for remarkable discoveries in the ocean sciences. The deep layers of the ocean/sea, however, cannot be directly detected by satellite remote sensors. Therefore, researchers have examined the relationships between salinity, height, and temperature of the oceans/Seas to estimate their subsurface water temperature using dynamical models and model-based data assimilation (numerical based and statistical approaches, which simulate these parameters by employing remotely sensed data and in situ measurements. Due to the requirements of comprehensive perception and the importance of global warming in decision making and scientific studies, this review provides comprehensive information on the methods that are used to estimate ocean/sea subsurface water temperature from remotely and non-remotely sensed data. To clarify the subsurface processes, the challenges, limitations, and perspectives of the existing methods are also investigated.

A new high-resolution electromagnetic method for subsurface imaging

Science.gov (United States)

Feng, Wanjie

For most electromagnetic (EM) geophysical systems, the contamination of primary fields on secondary fields ultimately limits the capability of the controlled-source EM methods. Null coupling techniques were proposed to solve this problem. However, the small orientation errors in the null coupling systems greatly restrict the applications of these systems. Another problem encountered by most EM systems is the surface interference and geologic noise, which sometimes make the geophysical survey impossible to carry out. In order to solve these problems, the alternating target antenna coupling (ATAC) method was introduced, which greatly removed the influence of the primary field and reduced the surface interference. But this system has limitations on the maximum transmitter moment that can be used. The differential target antenna coupling (DTAC) method was proposed to allow much larger transmitter moments and at the same time maintain the advantages of the ATAC method. In this dissertation, first, the theoretical DTAC calculations were derived mathematically using Born and Wolf's complex magnetic vector. 1D layered and 2D blocked earth models were used to demonstrate that the DTAC method has no responses for 1D and 2D structures. Analytical studies of the plate model influenced by conductive and resistive backgrounds were presented to explain the physical phenomenology behind the DTAC method, which is the magnetic fields of the subsurface targets are required to be frequency dependent. Then, the advantages of the DTAC method, e.g., high-resolution, reducing the geologic noise and insensitive to surface interference, were analyzed using surface and subsurface numerical examples in the EMGIMA software. Next, the theoretical advantages, such as high resolution and insensitive to surface interference, were verified by designing and developing a low-power (moment of 50 Am 2) vertical-array DTAC system and testing it on controlled targets and scaled target coils. At last, a

Insights Into Deglacial Through Holocene Climate Variability At The Peru-Chile Margin From Very High Sedimentation Rate Marine Cores

Science.gov (United States)

Chazen, C.; Dejong, H.; Altabet, M.; Herbert, T.

2007-12-01

The Peru-Chile upwelling system is situated at the epicenter of the modern ENSO System. The high settling flux of organic materials and poor ventilation of subsurface waters makes the Peru upwelling system one of the world's three major oxygen minimum/denitrification zones (Codispoti and Christensen, 1985). Extremely high sedimentation rates and permanent hypoxic/anoxic subsurface waters create excellent conditions for the preservation of organic matter. Despite the significance of this region in regards to paleoceanography and paleoclimatology, relatively little work has been done to characterize past Peruvian climate because carbonate dissolution hinders the use of conventional paleoclimate methods and hiatuses frequently interrupt the record. However, using nitrogen isotopes and alkenone paleothermometry on multiple sediment cores from the Margin we have managed to overcome many of these challenges to create a nearly continuous SST (Uk`37), productivity (C37total), biogenic opal and denitrification (δN15) record from the LGM through the late Holocene. Remarkably, recent work has revealed an annually laminated core, which spans from 1.4-8.0ka uninterrupted, providing a unique window into Holocene climate variability. Modern-day upwelling induced climate at the Peru-Chile margin is characterized by cold temperatures (21.5°C) high productivity and strong denitrification, which has persisted since the mid Holocene (4ka). The mid Holocene also marks the beginning of a dramatic increase in seasonality and ENSO variability consistent with other tropical climate indicators. Climate variability in the Mid-early Holocene shows a distinctively different pattern from that of the late Holocene; unproductive warm temperatures persist through the early Holocene in what can be described as a permanent El Niño-like state. Early tropical warming occurred near 17ka along with an unprecedented increase in denitrification, which is decoupled from local productivity. Early onset

Hyporheic zone as a bioreactor: sediment heterogeneity influencing biogeochemical processes

Science.gov (United States)

Perujo, Nuria; Romani, Anna M.; Sanchez-Vila, Xavier

2017-04-01

Mediterranean fluvial systems are characterized by frequent periods of low flow or even drought. During low flow periods, water from wastewater treatment plants (WWTPs) is proportionally large in fluvial systems. River water might be vertically transported through the hyporheic zone, and then porous medium acts as a complementary treatment system since, as water infiltrates, a suite of biogeochemical processes occurs. Subsurface sediment heterogeneity plays an important role since it influences the interstitial fluxes of the medium and drives biomass growing, determining biogeochemical reactions. In this study, WWTP water was continuously infiltrated for 3 months through two porous medium tanks: one consisting of 40 cm of fine sediment (homogeneous); and another comprised of two layers of different grain size sediments (heterogeneous), 20 cm of coarse sediment in the upper part and 20 cm of fine one in the bottom. Several hydrological, physicochemical and biological parameters were measured periodically (weekly at the start of the experiment and biweekly at the end). Analysed parameters include dissolved nitrogen, phosphorus, organic carbon, and oxygen all measured at the surface, and at 5, 20 and 40 cm depth. Variations in hydraulic conductivity with time were evaluated. Sediment samples were also analysed at three depths (surface, 20 and 40 cm) to determine bacterial density, chlorophyll content, extracellular polymeric substances, and biofilm function (extracellular enzyme activities and carbon substrate utilization profiles). Preliminary results suggest hydraulic conductivity to be the main driver of the differences in the biogeochemical processes occurring in the subsurface. At the heterogeneous tank, a low nutrient reduction throughout the whole medium is measured. In this medium, high hydraulic conductivity allows for a large amount of infiltrating water, but with a small residence time. Since some biological processes are largely time-dependent, small water

Bacterial diversity and community structure of a sub-surface aquifer exposed to realistic low herbicide concentrations

DEFF Research Database (Denmark)

Lipthay, Julia R. de; Johnsen, Kaare; Albrechtsen, H.-J.

2004-01-01

contaminants. We examined the effect of in situ exposure to realistic low concentrations of herbicides on the microbial diversity and community structure of sub-surface sediments from a shallow aquifer near Vejen (Denmark). Three different community analyses were performed: colony morphology typing, sole...... community analyses. In contrast, no significant effect was found on the bacterial diversity, except for the culturable fraction where a significantly increased richness and Shannon index was found in the herbicide acclimated sediments. The results of this study show that in situ exposure of sub-surface...... aquifers to realistic low concentrations of herbicides may alter the overall structure of a natural bacterial community, although significant effects on the genetic diversity and carbon substrate usage cannot be detected. The observed impact was probably due to indirect effects. In future investigations...

High-performance ionic diode membrane for salinity gradient power generation.

Science.gov (United States)

Gao, Jun; Guo, Wei; Feng, Dan; Wang, Huanting; Zhao, Dongyuan; Jiang, Lei

2014-09-03

Salinity difference between seawater and river water is a sustainable energy resource that catches eyes of the public and the investors in the background of energy crisis. To capture this energy, interdisciplinary efforts from chemistry, materials science, environmental science, and nanotechnology have been made to create efficient and economically viable energy conversion methods and materials. Beyond conventional membrane-based processes, technological breakthroughs in harvesting salinity gradient power from natural waters are expected to emerge from the novel fluidic transport phenomena on the nanoscale. A major challenge toward real-world applications is to extrapolate existing single-channel devices to macroscopic materials. Here, we report a membrane-scale nanofluidic device with asymmetric structure, chemical composition, and surface charge polarity, termed ionic diode membrane (IDM), for harvesting electric power from salinity gradient. The IDM comprises heterojunctions between mesoporous carbon (pore size ∼7 nm, negatively charged) and macroporous alumina (pore size ∼80 nm, positively charged). The meso-/macroporous membrane rectifies the ionic current with distinctly high ratio of ca. 450 and keeps on rectifying in high-concentration electrolytes, even in saturated solution. The selective and rectified ion transport furthermore sheds light on salinity-gradient power generation. By mixing artificial seawater and river water through the IDM, substantially high power density of up to 3.46 W/m(2) is discovered, which largely outperforms some commercial ion-exchange membranes. A theoretical model based on coupled Poisson and Nernst-Planck equations is established to quantitatively explain the experimental observations and get insights into the underlying mechanism. The macroscopic and asymmetric nanofluidic structure anticipates wide potentials for sustainable power generation, water purification, and desalination.

Journal of Earth System Science | Indian Academy of Sciences

Indian Academy of Sciences (India)

Modelling near subsurface temperature with mixed type boundary condition for ... of the salinization processes in the oasis shallow aquifers, Nefzaoua region, ... Simulation of suspended sediment transport initialized with satellite derived ..... A new program was developed in MATLAB for smoothing of the point sources.

Mapping Erosion and Salinity Risk Categories Using GIS and the Rangeland Hydrology Erosion Model

Science.gov (United States)

Up to fifteen percent of rangelands in the state of Utah in the United States are classified as being in severely eroding condition. Some of these degraded lands are located on saline, erodible soils of the Mancos Shale formation. This results in a disproportionate contribution of sediment, salinity...

Geochemical studies of backfill aggregates, lake sediment cores and the Hueco Bolson Aquifer

Science.gov (United States)

Thapalia, Anita

Aquifer that an important sources of water in the El Paso/Cd. Juraez metroplex. To delineate the boundary between fresh and brackish water from the northern Hueco Bolson Aquifer, we utilize an integrative geochemical, geophysical, and sedimentological approach. The goal of this study is to use geophysical well-log analysis and the water chemical analysis for identifying the changes in the quality of the groundwater. A detailed microgravity survey is utilized to explore the subsurface geological structures that control the conduits and/or barriers of groundwater flow. A detailed geochemical analysis of aquifer samples provide salinity of groundwater that will complement to the subsurface structures obtained from the geophysical study. This fundamental research in developing methods from an integrated approach to estimate aquifer quality can be used as an analog for similar studies in other arid regions.

Glacier-influenced sedimentation on high-latitude continental margins

National Research Council Canada - National Science Library

Dowdeswell, J. A; Cofaigh, C. Ó

2002-01-01

This book examines the process and patterns of glacier-influenced sedimentation on high-latitude continental margins and the geophysical and geological signatures of the resulting sediments and landform...

Simulation of integrated surface-water/ground-water flow and salinity for a coastal wetland and adjacent estuary

Science.gov (United States)

Langevin, C.; Swain, E.; Wolfert, M.

2005-01-01

The SWIFT2D surface-water flow and transport code, which solves the St Venant equations in two dimensions, was coupled with the SEAWAT variable-density ground-water code to represent hydrologic processes in coastal wetlands and adjacent estuaries. A sequentially coupled time-lagged approach was implemented, based on a variable-density form of Darcy's Law, to couple the surface and subsurface systems. The integrated code also represents the advective transport of salt mass between the surface and subsurface. The integrated code was applied to the southern Everglades of Florida to quantify flow and salinity patterns and to evaluate effects of hydrologic processes. Model results confirm several important observations about the coastal wetland: (1) the coastal embankment separating the wetland from the estuary is overtopped only during tropical storms, (2) leakage between the surface and subsurface is locally important in the wetland, but submarine ground-water discharge does not contribute large quantities of freshwater to the estuary, and (3) coastal wetland salinities increase to near seawater values during the dry season, and the wetland flushes each year with the onset of the wet season. ?? 2005 Elsevier B.V. All rights reserved.

2500 high-quality genomes reveal that the biogeochemical cycles of C, N, S and H are cross-linked by metabolic handoffs in the terrestrial subsurface

Science.gov (United States)

Anantharaman, K.; Brown, C. T.; Hug, L. A.; Sharon, I.; Castelle, C. J.; Shelton, A.; Bonet, B.; Probst, A. J.; Thomas, B. C.; Singh, A.; Wilkins, M.; Williams, K. H.; Tringe, S. G.; Beller, H. R.; Brodie, E.; Hubbard, S. S.; Banfield, J. F.

2015-12-01

Microorganisms drive the transformations of carbon compounds in the terrestrial subsurface, a key reservoir of carbon on earth, and impact other linked biogeochemical cycles. Our current knowledge of the microbial ecology in this environment is primarily based on 16S rRNA gene sequences that paint a biased picture of microbial community composition and provide no reliable information on microbial metabolism. Consequently, little is known about the identity and metabolic roles of the uncultivated microbial majority in the subsurface. In turn, this lack of understanding of the microbial processes that impact the turnover of carbon in the subsurface has restricted the scope and ability of biogeochemical models to capture key aspects of the carbon cycle. In this study, we used a culture-independent, genome-resolved metagenomic approach to decipher the metabolic capabilities of microorganisms in an aquifer adjacent to the Colorado River, near Rifle, CO, USA. We sequenced groundwater and sediment samples collected across fifteen different geochemical regimes. Sequence assembly, binning and manual curation resulted in the recovery of 2,542 high-quality genomes, 27 of which are complete. These genomes represent 1,300 non-redundant organisms comprising both abundant and rare community members. Phylogenetic analyses involving ribosomal proteins and 16S rRNA genes revealed the presence of up to 34 new phyla that were hitherto unknown. Less than 11% of all genomes belonged to the 4 most commonly represented phyla that constitute 93% of all currently available genomes. Genome-specific analyses of metabolic potential revealed the co-occurrence of important functional traits such as carbon fixation, nitrogen fixation and use of electron donors and electron acceptors. Finally, we predict that multiple organisms are often required to complete redox pathways through a complex network of metabolic handoffs that extensively cross-link subsurface biogeochemical cycles.

Marine sediments and palaeoclimatic variations since the Late Pleistocene: An overview for the Arabian Sea

Digital Repository Service at National Institute of Oceanography (India)

Nigam, R.; Hashimi, N.H.

A large number of surfacial and sub-surface sediments from the Arabian Sea have been studied to enhance our understanding of palaeoclimatic variations over the Indian region. Bsically the surficial sediments have been studied for their living...

Circulation and sedimentation in a tidal-influenced fjord lake: Lake McKerrow, New Zealand

Science.gov (United States)

Pickrill, R. A.; Irwin, J.; Shakespeare, B. S.

1981-01-01

Lake McKerrow is a tide-influenced fjord lake, separated from the open sea by a Holocene barrier spit. Fresh, oxygenated waters of the epilimnion overlie saline, deoxygenated waters of the hypolimnion. During winter, water from the Upper Hollyford River interflows along the pycnocline, depositing coarse silt on the steep delta and transporting finer sediment down-lake. An extensive sub-lacustrine channel system on the foreset delta slope is possibly maintained by turbidity currents. Saline waters of the hypolimnion are periodically replenished. During high tides and low lake levels saline water flows into the lake and downslope into the lake basin as a density current in a well defined channel.

Immunological techniques as tools to characterize the subsurface microbial community at a trichloroethylene contaminated site

Energy Technology Data Exchange (ETDEWEB)

Fliermans, C.B.; Dougherty, J.M.; Franck, M.M.; McKinzey, P.C.; Hazen, T.C.

1992-01-01

Effective in situ bioremediation strategies require an understanding of the effects pollutants and remediation techniques have on subsurface microbial communities. Therefore, detailed characterization of a site's microbial communities is important. Subsurface sediment borings and water samples were collected from a trichloroethylene (TCE) contaminated site, before and after horizontal well in situ air stripping and bioventing, as well as during methane injection for stimulation of methane-utilizing microorganisms. Subsamples were processed for heterotrophic plate counts, acridine orange direct counts (AODC), community diversity, direct fluorescent antibodies (DFA) enumeration for several nitrogen-transforming bacteria, and Biolog [reg sign] evaluation of enzyme activity in collected water samples. Plate counts were higher in near-surface depths than in the vadose zone sediment samples. During the in situ air stripping and bioventing, counts increased at or near the saturated zone, remained elevated throughout the aquifer, but did not change significantly after the air stripping. Sporadic increases in plate counts at different depths as well as increased diversity appeared to be linked to differing lithologies. AODCs were orders of magnitude higher than plate counts and remained relatively constant with depth except for slight increases near the surface depths and the capillary fringe. Nitrogen-transforming bacteria, as measured by serospecific DFA, were greatly affected both by the in situ air stripping and the methane injection. Biolog[reg sign] activity appeared to increase with subsurface stimulation both by air and methane. The complexity of subsurface systems makes the use of selective monitoring tools imperative.

Immunological techniques as tools to characterize the subsurface microbial community at a trichloroethylene contaminated site

Energy Technology Data Exchange (ETDEWEB)

Fliermans, C.B.; Dougherty, J.M.; Franck, M.M.; McKinzey, P.C.; Hazen, T.C.

1992-12-31

Effective in situ bioremediation strategies require an understanding of the effects pollutants and remediation techniques have on subsurface microbial communities. Therefore, detailed characterization of a site`s microbial communities is important. Subsurface sediment borings and water samples were collected from a trichloroethylene (TCE) contaminated site, before and after horizontal well in situ air stripping and bioventing, as well as during methane injection for stimulation of methane-utilizing microorganisms. Subsamples were processed for heterotrophic plate counts, acridine orange direct counts (AODC), community diversity, direct fluorescent antibodies (DFA) enumeration for several nitrogen-transforming bacteria, and Biolog {reg_sign} evaluation of enzyme activity in collected water samples. Plate counts were higher in near-surface depths than in the vadose zone sediment samples. During the in situ air stripping and bioventing, counts increased at or near the saturated zone, remained elevated throughout the aquifer, but did not change significantly after the air stripping. Sporadic increases in plate counts at different depths as well as increased diversity appeared to be linked to differing lithologies. AODCs were orders of magnitude higher than plate counts and remained relatively constant with depth except for slight increases near the surface depths and the capillary fringe. Nitrogen-transforming bacteria, as measured by serospecific DFA, were greatly affected both by the in situ air stripping and the methane injection. Biolog{reg_sign} activity appeared to increase with subsurface stimulation both by air and methane. The complexity of subsurface systems makes the use of selective monitoring tools imperative.

Estimation of soil salinity in a drip irrigation system by using joint inversion of multicoil electromagnetic induction measurements

KAUST Repository

Jadoon, Khan Zaib; Moghadas, Davood; Jadoon, Aurangzeb; Missimer, Thomas M.; Al-Mashharawi, Samir K.; McCabe, Matthew

2015-01-01

-Explorer) is used for subsurface characterization of soil salinity in a drip irrigation system via a joint inversion approach of multiconfiguration EMI measurements. EMI measurements were conducted across a farm where Acacia trees are irrigated with brackish water

Ma_MISS on ExoMars: Mineralogical Characterization of the Martian Subsurface

Science.gov (United States)

De Sanctis, Maria Cristina; Altieri, Francesca; Ammannito, Eleonora; Biondi, David; De Angelis, Simone; Meini, Marco; Mondello, Giuseppe; Novi, Samuele; Paolinetti, Riccardo; Soldani, Massimo; Mugnuolo, Raffaele; Pirrotta, Simone; Vago, Jorge L.; Ma_MISS Team

2017-07-01

The Ma_MISS (Mars Multispectral Imager for Subsurface Studies) experiment is the visible and near infrared (VNIR) miniaturized spectrometer hosted by the drill system of the ExoMars 2020 rover. Ma_MISS will perform IR spectral reflectance investigations in the 0.4-2.2 μm range to characterize the mineralogy of excavated borehole walls at different depths (between 0 and 2 m). The spectral sampling is about 20 nm, whereas the spatial resolution over the target is 120 μm. Making use of the drill's movement, the instrument slit can scan a ring and build up hyperspectral images of a borehole. The main goal of the Ma_MISS instrument is to study the martian subsurface environment. Access to the martian subsurface is crucial to our ability to constrain the nature, timing, and duration of alteration and sedimentation processes on Mars, as well as habitability conditions. Subsurface deposits likely host and preserve H2O ice and hydrated materials that will contribute to our understanding of the H2O geochemical environment (both in the liquid and in the solid state) at the ExoMars 2020 landing site. The Ma_MISS spectral range and sampling capabilities have been carefully selected to allow the study of minerals and ices in situ before the collection of samples. Ma_MISS will be implemented to accomplish the following scientific objectives: (1) determine the composition of subsurface materials, (2) map the distribution of subsurface H2O and volatiles, (3) characterize important optical and physical properties of materials (e.g., grain size), and (4) produce a stratigraphic column that will inform with regard to subsurface geological processes. The Ma_MISS findings will help to refine essential criteria that will aid in our selection of the most interesting subsurface formations from which to collect samples.

Temperature Data Assimilation with Salinity Corrections: Validation for the NSIPP Ocean Data Assimilation System in the Tropical Pacific Ocean, 1993-1998

Science.gov (United States)

Troccoli, Alberto; Rienecker, Michele M.; Keppenne, Christian L.; Johnson, Gregory C.

2003-01-01

The NASA Seasonal-to-Interannual Prediction Project (NSIPP) has developed an Ocean data assimilation system to initialize the quasi-isopycnal ocean model used in our experimental coupled-model forecast system. Initial tests of the system have focused on the assimilation of temperature profiles in an optimal interpolation framework. It is now recognized that correction of temperature only often introduces spurious water masses. The resulting density distribution can be statically unstable and also have a detrimental impact on the velocity distribution. Several simple schemes have been developed to try to correct these deficiencies. Here the salinity field is corrected by using a scheme which assumes that the temperature-salinity relationship of the model background is preserved during the assimilation. The scheme was first introduced for a zlevel model by Troccoli and Haines (1999). A large set of subsurface observations of salinity and temperature is used to cross-validate two data assimilation experiments run for the 6-year period 1993-1998. In these two experiments only subsurface temperature observations are used, but in one case the salinity field is also updated whenever temperature observations are available.

Recent experimental data may point to a greater role for osmotic pressures in the subsurface

Science.gov (United States)

Neuzil, C.E.; Provost, A.M.

2009-01-01

Uncertainty about the origin of anomalous fluid pressures in certain geologic settings has caused researchers to take a second look at osmosis, or flow driven by chemical potential differences, as a pressure‐generating process in the subsurface. Interest in geological osmosis has also increased because of an in situ experiment by Neuzil (2000) suggesting that Pierre Shale could generate large osmotic pressures when highly compacted. In the last few years, additional laboratory and in situ experiments have greatly increased the number of data on osmotic properties of argillaceous formations, but they have not been systematically examined. In this paper we compile these data and explore their implications for osmotic pressure generation in subsurface systems. Rather than base our analysis on osmotic efficiencies, which depend strongly on concentration, we calculated values of a quantity we term osmotic specific surface area (Aso) that, in principle, is a property of the porous medium only. The Aso values are consistent with a surprisingly broad spectrum of osmotic behavior in argillaceous formations, and all the formations tested exhibited at least a modest ability to generate osmotic pressure. It appears possible that under appropriate conditions some formations can be highly effective osmotic membranes able to generate osmotic pressures exceeding 30 MPa (3 km of head) at porosities as high as ∼0.1 and pressures exceeding 10 MPa at porosities as high as ∼0.2. These findings are difficult to reconcile with the lack of compelling field evidence for osmotic pressures, and we propose three explanations for the disparity: (1) Our analysis is flawed and argillaceous formations are less effective osmotic membranes than it suggests; (2) the necessary subsurface conditions, significant salinity differences within intact argillaceous formations, are rare; or (3) osmotic pressures are unlikely to be detected and are not recognized when encountered. The last possibility

Denitrifying sulfide removal process on high-salinity wastewaters in the presence of Halomonas sp.

Science.gov (United States)

Liu, Chunshuang; Zhao, Dongfeng; Ma, Wenjuan; Guo, Yadong; Wang, Aijie; Wang, Qilin; Lee, Duu-Jong

2016-02-01

Biological conversion of sulfide, acetate, and nitrate to, respectively, elemental sulfur (S(0)), carbon dioxide, and nitrogen-containing gas (such as N2) at NaCl concentration of 35-70 g/L was achieved in an expanded granular sludge bed (EGSB) reactor. A C/N ratio of 1:1 was noted to achieve high sulfide removal and S(0) conversion rate at high salinity. The extracellular polymeric substance (EPS) quantities were increased with NaCl concentration, being 11.4-mg/g volatile-suspended solids at 70 mg/L NaCl. The denitrifying sulfide removal (DSR) consortium incorporated Thauera sp. and Halomonas sp. as the heterotrophs and Azoarcus sp. being the autotrophs at high salinity condition. Halomonas sp. correlates with the enhanced DSR performance at high salinity.

Nitrogen removal through N cycling from sediments in a constructed coastal marsh as assessed by 15N-isotope dilution.

Science.gov (United States)

Ro, Hee-Myong; Kim, Pan-Gun; Park, Ji-Suk; Yun, Seok-In; Han, Junho

2018-04-01

Constructed coastal marsh regulates land-born nitrogen (N) loadings through salinity-dependent microbial N transformation processes. A hypothesis that salinity predominantly controls N removal in marsh was tested through incubation in a closed system with added- 15 NH 4 + using sediments collected from five sub-marshes in Shihwa marsh, Korea. Time-course patterns of concentrations and 15 N-atom% of soil-N pools were analyzed. Sediments having higher salinity and lower soil organic-C and acid-extractable organic-N exhibited slower rates of N mineralization and immobilization, nitrification, and denitrification. Rates of denitrification were not predicted well by sediment salinity but by its organic-C, indicating heterotrophic denitrification. Denitrification dominated N-loss from this marsh, and nitrogen removal capacity of this marsh was estimated at 337 kg N day -1 (9.9% of the daily N-loadings) considering the current rooting depth of common reeds (1.0 m). We showed that sediment N removal decreases with increasing salinity and can increase with increasing organic-C for heterotrophic denitrification. Copyright © 2018 Elsevier Ltd. All rights reserved.

The role of floridoside in osmoadaptation of coral-associated algal endosymbionts to high-salinity conditions

KAUST Repository

Ochsenkuhn, Michael A.

2017-08-17

The endosymbiosis between Symbiodinium dinoflagellates and stony corals provides the foundation of coral reef ecosystems. The survival of these ecosystems is under threat at a global scale, and better knowledge is needed to conceive strategies for mitigating future reef loss. Environmental disturbance imposing temperature, salinity, and nutrient stress can lead to the loss of the Symbiodinium partner, causing so-called coral bleaching. Some of the most thermotolerant coral-Symbiodinium associations occur in the Persian/Arabian Gulf and the Red Sea, which also represent the most saline coral habitats. We studied whether Symbiodinium alter their metabolite content in response to high-salinity environments. We found that Symbiodinium cells exposed to high salinity produced high levels of the osmolyte 2-O-glycerol-α-d-galactopyranoside (floridoside), both in vitro and in their coral host animals, thereby increasing their capacity and, putatively, the capacity of the holobiont to cope with the effects of osmotic stress in extreme environments. Given that floridoside has been previously shown to also act as an antioxidant, this osmolyte may serve a dual function: first, to serve as a compatible organic osmolyte accumulated by Symbiodinium in response to elevated salinities and, second, to counter reactive oxygen species produced as a consequence of potential salinity and heat stress.

Metagenomics unveils the attributes of the alginolytic guilds of sediments from four distant cold coastal environments: Alginolytic guilds from cold sediments

Energy Technology Data Exchange (ETDEWEB)

Matos, Marina N. [Laboratorio de Microbiología Ambiental, Centro para el Estudio de Sistemas Marinos (CESIMAR, CONICET), Puerto Madryn U9120ACD Argentina; Lozada, Mariana [Laboratorio de Microbiología Ambiental, Centro para el Estudio de Sistemas Marinos (CESIMAR, CONICET), Puerto Madryn U9120ACD Argentina; Anselmino, Luciano E. [Laboratorio de Microbiología Ambiental, Centro para el Estudio de Sistemas Marinos (CESIMAR, CONICET), Puerto Madryn U9120ACD Argentina; Musumeci, Matías A. [Laboratorio de Microbiología Ambiental, Centro para el Estudio de Sistemas Marinos (CESIMAR, CONICET), Puerto Madryn U9120ACD Argentina; Henrissat, Bernard [Architecture et Fonction des Macromolécules Biologiques, CNRS, Aix-Marseille Université, Marseille 13288 France; INRA, USC 1408 AFMB, Marseille F-13288 France; Department of Biological Sciences, King Abdulaziz University, Jeddah 21589 Saudi Arabia; Jansson, Janet K. [Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland WA 99352 USA; Mac Cormack, Walter P. [Instituto Antártico Argentino, Ciudad Autónoma de Buenos Aires, C1064ABR, Argentina; Instituto Nanobiotec, CONICET - Universidad de Buenos Aires, Ciudad Autónoma de Buenos Aires, C1113AAC, Argentina; Carroll, JoLynn [Akvaplan-niva, Fram - High North Research Centre for Climate and the Environment, Tromsø NO-9296 Norway; CAGE - Centre for Arctic Gas Hydrate, Environment and Climate, UiT The Arctic University of Norway, Tromsø N-9037 Norway; Sjöling, Sara [School of Natural Sciences and Environmental Studies, Södertörn University, Huddinge 141 89 Sweden; Lundgren, Leif [Stockholm University, Stockholm SE-106 91 Sweden; Dionisi, Hebe M. [Laboratorio de Microbiología Ambiental, Centro para el Estudio de Sistemas Marinos (CESIMAR, CONICET), Puerto Madryn U9120ACD Argentina

2016-07-18

Alginates are abundant polysaccharides in brown algae that constitute an important energy source for marine heterotrophic bacteria. Despite the key role of alginate assimilation processes in the marine carbon cycle, little information is available on the bacterial populations involved in these processes. The goal of this work was to gain insight into the structure and functional traits of the alginolytic communities from sediments of cold coastal environments. Sediment metagenomes from high-latitude regions of both Hemispheres were interrogated for alginate lyase gene homolog sequences and their genomic context. Sediments contained highly abundant and diverse bacterial assemblages with alginolytic potential, including members of Bacteroidetes and Proteobacteria, as well as several poorly characterized taxa. Temperature and salinity were correlated to the variation in community structure. The microbial communities in Arctic and Antarctic sediments exhibited the most similar alginolytic profiles, whereas brackish sediments had a higher proportion of novel members. Examination of the gene context of the alginate lyase homologs revealed distinct patterns according to the phylogenetic origin of the scaffolds, with evidence of evolutionary relationships among lineages. This information is relevant for understanding carbon fluxes in cold coastal environments and provides valuable information for the development of biotechnological applications from brown algae biomass.

The impact of pre-restoration land-use and disturbance on sediment structure, hydrology and the sediment geochemical environment in restored saltmarshes.

Science.gov (United States)

Spencer, Kate L; Carr, Simon J; Diggens, Lucy M; Tempest, James A; Morris, Michelle A; Harvey, Gemma L

2017-06-01

Saltmarshes are being lost or degraded as a result of human activity resulting in loss of critical ecosystem services including the provision of wild species diversity, water quality regulation and flood regulation. To compensate, saltmarshes are being restored or re-created, usually driven by legislative requirements for increased habitat diversity, flood regulation and sustainable coastal defense. Yet, there is increasing evidence that restoration may not deliver anticipated ecosystem services; this is frequently attributed to poor drainage and sediment anoxia. However, physical sediment characteristics, hydrology and the sediment geochemical environment are rarely examined in restoration schemes, despite such factors being critical for plant succession. This study presents the novel integration of 3D-computed X-ray microtomography to quantify sediment structure and porosity, with water level and geochemical data to understand the impact of pre-restoration land use and disturbance on the structure and functioning of restored saltmarshes. The study combines a broad-scale investigation of physical sediment characteristics in nine de-embanked saltmarshes across SE England, with an intensive study at one site examining water levels, sediment structure and the sediment geochemical environment. De-embankment does not restore the hydrological regime, or the physical/chemical framework in the saltmarshes and evidence of disturbance includes a reduction in microporosity, pore connectivity and water storage capacity, a lack of connectivity between the sub-surface environment and overlying floodwaters, and impeded sub-surface water flow and drainage. This has significant consequences for the sediment geochemical environment. This disturbance is evident for at least two decades following restoration and is likely to be irreversible. It has important implications for plant establishment in particular, ecosystem services including flood regulation, nutrient cycling and wild

Biodegradation of organic compounds in vadose zone and aquifer sediments

International Nuclear Information System (INIS)

Konopka, A.; Turco, R.

1991-01-01

The microbial processes that occur in the subsurface under a typical Midwest agricultural soil were studied. A 26-m bore was installed in November of 1988 at a site of the Purdue University Agronomy Research Center. Aseptic collections of soil materials were made at 17 different depths. Physical analysis indicated that the site contained up to 14 different strata. The site materials were primarily glacial tills with a high carbonate content. The N,P, and organic C contents of sediments tended to decrease with depth. Ambient water content was generally less than the water content, which corresponds to a -0.3-bar equivalent. No pesticides were detected in slurry incubations of up to 128 days. The sorption of atrazine and metolachlor was correlated with the clay content of the sediments. Microbial biomass (determined by direct microscopic count, viable count, and phospholipid assay) in the tills was lower than in either the surface materials or the aquifer located at 25 m. The biodegradation of glucose and phenol occurred rapidly and without a lag in samples from the aquifer capillary fringe, saturated zone, and surface soils. In contrast, lag periods and smaller biodegradation rates were found in the till samples. Subsurface sediments are rich in microbial numbers and activity. The most active strata appear to be transmissive layers in the saturated zone. This implies that the availability of water may limit activity in the profile

The impact of catchment source group classification on the accuracy of sediment fingerprinting outputs.

Science.gov (United States)

Pulley, Simon; Foster, Ian; Collins, Adrian L

2017-06-01

The objective classification of sediment source groups is at present an under-investigated aspect of source tracing studies, which has the potential to statistically improve discrimination between sediment sources and reduce uncertainty. This paper investigates this potential using three different source group classification schemes. The first classification scheme was simple surface and subsurface groupings (Scheme 1). The tracer signatures were then used in a two-step cluster analysis to identify the sediment source groupings naturally defined by the tracer signatures (Scheme 2). The cluster source groups were then modified by splitting each one into a surface and subsurface component to suit catchment management goals (Scheme 3). The schemes were tested using artificial mixtures of sediment source samples. Controlled corruptions were made to some of the mixtures to mimic the potential causes of tracer non-conservatism present when using tracers in natural fluvial environments. It was determined how accurately the known proportions of sediment sources in the mixtures were identified after unmixing modelling using the three classification schemes. The cluster analysis derived source groups (2) significantly increased tracer variability ratios (inter-/intra-source group variability) (up to 2122%, median 194%) compared to the surface and subsurface groupings (1). As a result, the composition of the artificial mixtures was identified an average of 9.8% more accurately on the 0-100% contribution scale. It was found that the cluster groups could be reclassified into a surface and subsurface component (3) with no significant increase in composite uncertainty (a 0.1% increase over Scheme 2). The far smaller effects of simulated tracer non-conservatism for the cluster analysis based schemes (2 and 3) was primarily attributed to the increased inter-group variability producing a far larger sediment source signal that the non-conservatism noise (1). Modified cluster analysis

Environmental controls on the speciation and distribution of mercury in surface sediments of a tropical estuary, India

International Nuclear Information System (INIS)

Chakraborty, Parthasarathi; Babu, P.V. Raghunadh

2015-01-01

Highlights: • Physico-chemical parameters of water column control Hg speciation in sediments. • Sediments from the middle of the estuary were contaminated by Hg. • Concentrations of Hg were less during the monsoon and post monsoon period. • Salinity, pH of water column may change Hg speciation of the bottom sediments. • TOC in sediments control Hg partitioning in the system. - Abstract: Distribution and speciation of mercury (Hg) in the sediments from a tropical estuary (Godavari estuary) was influenced by the changing physico-chemical parameters of the overlying water column. The sediments from the upstream and downstream of the estuary were uncontaminated but the sediments from the middle of the estuary were contaminated by Hg. The concentrations of Hg became considerably less during the monsoon and post monsoon period. Total Hg concentrations and its speciation (at the middle of the estuary) were dependent on the salinity of the overlying water column. However, salinity had little or no effect on Hg association with organic phases in the sediments at downstream. Increasing pH of the overlying water column corresponded with an increase in the total Hg content in the sediments. Total organic carbon in the sediments played an important role in controlling Hg partitioning in the system. Uncomplexed Hg binding ligands were available in the sediments

Vascular flora of saline lakes in the southern high plains of Texas and eastern New Mexico

Science.gov (United States)

Rosen, David J.; Conway, Warren C.; Haukos, David A.; Caskey, Amber D.

2013-01-01

Saline lakes and freshwater playas form the principal surface hydrological feature of the High Plains of the Southern Great Plains. Saline lakes number less than 50 and historically functioned as discharge wetlands with relatively consistent water availability due to the presence of one or more springs. Currently, less than ten saline lakes contain functional springs. A survey of vascular plants at six saline lakes in the Southern High Plains of northwest Texas and one in eastern New Mexico during May and September 2009 resulted in a checklist of 49 species representing 16 families and 40 genera. The four families with the most species were Asteraceae (12), Amaranthaceae (8), Cyperaceae (5), and Poaceae (12). Non-native species (Bromus catharticus, Poa compressa, Polypogon monspeliensis, Sonchus oleraceus, Kochia scoparia, and Tamarix ramosissima) accounted for 10% of the total species recorded. Whereas nearly 350 species of vascular plants have been identified in playas in the Southern High Plains, saline lakes contain a fraction of this species richness. The Southern High Plains saline lake flora is regionally unique, containing taxa not found in playas, with species composition that is more similar to temperate desert wetlands of the Intermountain Region and Gulf Coastal Plain of North America.

Sensitivity of fluvial sediment source apportionment to mixing model assumptions: A Bayesian model comparison.

Science.gov (United States)

Cooper, Richard J; Krueger, Tobias; Hiscock, Kevin M; Rawlins, Barry G

2014-11-01

Mixing models have become increasingly common tools for apportioning fluvial sediment load to various sediment sources across catchments using a wide variety of Bayesian and frequentist modeling approaches. In this study, we demonstrate how different model setups can impact upon resulting source apportionment estimates in a Bayesian framework via a one-factor-at-a-time (OFAT) sensitivity analysis. We formulate 13 versions of a mixing model, each with different error assumptions and model structural choices, and apply them to sediment geochemistry data from the River Blackwater, Norfolk, UK, to apportion suspended particulate matter (SPM) contributions from three sources (arable topsoils, road verges, and subsurface material) under base flow conditions between August 2012 and August 2013. Whilst all 13 models estimate subsurface sources to be the largest contributor of SPM (median ∼76%), comparison of apportionment estimates reveal varying degrees of sensitivity to changing priors, inclusion of covariance terms, incorporation of time-variant distributions, and methods of proportion characterization. We also demonstrate differences in apportionment results between a full and an empirical Bayesian setup, and between a Bayesian and a frequentist optimization approach. This OFAT sensitivity analysis reveals that mixing model structural choices and error assumptions can significantly impact upon sediment source apportionment results, with estimated median contributions in this study varying by up to 21% between model versions. Users of mixing models are therefore strongly advised to carefully consider and justify their choice of model structure prior to conducting sediment source apportionment investigations. An OFAT sensitivity analysis of sediment fingerprinting mixing models is conductedBayesian models display high sensitivity to error assumptions and structural choicesSource apportionment results differ between Bayesian and frequentist approaches.

Faulting of gas-hydrate-bearing marine sediments - contribution to permeability

Science.gov (United States)

Dillon, William P.; Holbrook, W.S.; Drury, Rebecca; Gettrust, Joseph; Hutchinson, Deborah; Booth, James; Taylor, Michael

1997-01-01

Extensive faulting is observed in sediments containing high concentrations of methane hydrate off the southeastern coast of the United States. Faults that break the sea floor show evidence of both extension and shortening; mud diapirs are also present. The zone of recent faulting apparently extends from the ocean floor down to the base of gas-hydrate stability. We infer that the faulting resulted from excess pore pressure in gas trapped beneath the gas hydrate-beating layer and/or weakening and mobilization of sediments in the region just below the gas-hydrate stability zone. In addition to the zone of surface faults, we identified two buried zones of faulting, that may have similar origins. Subsurface faulted zones appear to act as gas traps.

Bioaccumulation of silver nanoparticles in rainbow trout (Oncorhynchus mykiss): Influence of concentration and salinity

International Nuclear Information System (INIS)

Salari Joo, Hamid; Kalbassi, Mohammad Reza; Yu, Il Je; Lee, Ji Hyun; Johari, Seyed Ali

2013-01-01

: liver > kidneys ≈ gills > white muscles. All the tissue silver levels were significantly higher in the high salinity than in the moderate salinity. In addition, all the fish exposed to Ag-NPs in the low, moderate, and high salinity showed a concentration-dependent increase in their hepatosomatic index (HSI). In conclusion, most Ag-NPs that enter into freshwater ecosystems (low ionic strength) remain suspended, representing a potentially negative threat to the biota in an ionic or nanoscale form. However, in a higher salinity, nanoparticles agglomerate and precipitate on the surface of the sediment

Bioaccumulation of silver nanoparticles in rainbow trout (Oncorhynchus mykiss): Influence of concentration and salinity

Energy Technology Data Exchange (ETDEWEB)

Salari Joo, Hamid, E-mail: h.salary1365@gmail.com [Department of Aquaculture, Marine Science Faculty, Tarbiat Modares University, Mazandaran, Noor (Iran, Islamic Republic of); Kalbassi, Mohammad Reza, E-mail: kalbassi_m@modares.ac.ir [Department of Aquaculture, Marine Science Faculty, Tarbiat Modares University, Mazandaran, Noor (Iran, Islamic Republic of); Yu, Il Je, E-mail: u1670916@chol.com [Institute of Nano-product Safety Research, Hoseo University, 165 Sechul-ri, Baebang-myun, Asan 336-795 (Korea, Republic of); Lee, Ji Hyun, E-mail: toxin@dreamwiz.com [Institute of Nano-product Safety Research, Hoseo University, Asan (Korea, Republic of); Johari, Seyed Ali, E-mail: a.johari@uok.ac.ir [Aquaculture Department, Natural Resources Faculty, University of Kurdistan, Kurdistan, Sanandaj (Iran, Islamic Republic of)

2013-09-15

order: liver > kidneys ≈ gills > white muscles. All the tissue silver levels were significantly higher in the high salinity than in the moderate salinity. In addition, all the fish exposed to Ag-NPs in the low, moderate, and high salinity showed a concentration-dependent increase in their hepatosomatic index (HSI). In conclusion, most Ag-NPs that enter into freshwater ecosystems (low ionic strength) remain suspended, representing a potentially negative threat to the biota in an ionic or nanoscale form. However, in a higher salinity, nanoparticles agglomerate and precipitate on the surface of the sediment.

MICROBIAL DIVERSITY IN SURFACE SEDIMENTS: A COMPARISON OF TWO ESTUARINE CONTINUUMS

Science.gov (United States)

The microbial diversity in estuarine sediments of the Altamaha and Savannah Rivers in Georgia were compared temporally and spatially using phospholipid fatty acid (PLFA) analysis. Surface sediment samples collected along a salinity gradient were also analyzed for ATP, TOC, and C ...

Effect of high sedimentation rates on surface sediment dynamics and mangrove growth in the Porong River, Indonesia.

Science.gov (United States)

Sidik, Frida; Neil, David; Lovelock, Catherine E

2016-06-15

Large quantities of mud from the LUSI (Lumpur Sidoarjo) volcano in northeastern Java have been channeled to the sea causing high rates of sediment delivery to the mouth of the Porong River, which has a cover of natural and planted mangroves. This study investigated how the high rates of sediment delivery affected vertical accretion, surface elevation change and the growth of Avicennia sp., the dominant mangrove species in the region. During our observations in 2010-2011 (4-5years after the initial volcanic eruption), very high rates of sedimentation in the forests at the mouth of the river gave rise to high vertical accretion of over 10cmy(-1). The high sedimentation rates not only resulted in reduced growth of Avicennia sp. mangrove trees at the two study sites at the Porong River mouth, but also gave rise to high soil surface elevation gains. Copyright © 2016 Elsevier Ltd. All rights reserved.

Salinity tolerance loci revealed in rice using high-throughput non-invasive phenotyping

KAUST Repository

Al-Tamimi, Nadia Ali

2016-11-17

High-throughput phenotyping produces multiple measurements over time, which require new methods of analyses that are flexible in their quantification of plant growth and transpiration, yet are computationally economic. Here we develop such analyses and apply this to a rice population genotyped with a 700k SNP high-density array. Two rice diversity panels, indica and aus, containing a total of 553 genotypes, are phenotyped in waterlogged conditions. Using cubic smoothing splines to estimate plant growth and transpiration, we identify four time intervals that characterize the early responses of rice to salinity. Relative growth rate, transpiration rate and transpiration use efficiency (TUE) are analysed using a new association model that takes into account the interaction between treatment (control and salt) and genetic marker. This model allows the identification of previously undetected loci affecting TUE on chromosome 11, providing insights into the early responses of rice to salinity, in particular into the effects of salinity on plant growth and transpiration.

Salinity tolerance loci revealed in rice using high-throughput non-invasive phenotyping

KAUST Repository

Al-Tamimi, Nadia Ali; Brien, Chris; Oakey, Helena; Berger, Bettina; Saade, Stephanie; Ho, Yung Shwen; Schmö ckel, Sandra M.; Tester, Mark A.; Negrã o, Só nia

2016-01-01

High-throughput phenotyping produces multiple measurements over time, which require new methods of analyses that are flexible in their quantification of plant growth and transpiration, yet are computationally economic. Here we develop such analyses and apply this to a rice population genotyped with a 700k SNP high-density array. Two rice diversity panels, indica and aus, containing a total of 553 genotypes, are phenotyped in waterlogged conditions. Using cubic smoothing splines to estimate plant growth and transpiration, we identify four time intervals that characterize the early responses of rice to salinity. Relative growth rate, transpiration rate and transpiration use efficiency (TUE) are analysed using a new association model that takes into account the interaction between treatment (control and salt) and genetic marker. This model allows the identification of previously undetected loci affecting TUE on chromosome 11, providing insights into the early responses of rice to salinity, in particular into the effects of salinity on plant growth and transpiration.

UNSAT-H infiltration model calibration at the Subsurface Disposal Area, Idaho National Engineering Laboratory

International Nuclear Information System (INIS)

Martian, P.

1995-10-01

Soil moisture monitoring data from the expanded neutron probe monitoring network located at the Subsurface Disposal Area (SDA) of the Idaho National Engineering Laboratory (INEL) were used to calibrate numerical infiltration models for 15 locations within and near the SDA. These calibrated models were then used to simulate infiltration into the SDA surficial sediments and underlying basalts for the entire operational period of the SDA (1952--1995). The purpose of performing the simulations was to obtain a time variant infiltration source term for future subsurface pathway modeling efforts as part of baseline risk assessment or performance assessments. The simulation results also provided estimates of the average recharge rate for the simulation period and insight into infiltration patterns at the SDA. These results suggest that the average aquifer recharge rate below the SDA may be at least 8 cm/yr and may be as high as 12 cm/yr. These values represent 38 and 57% of the average annual precipitation occurring at the INEL, respectively. The simulation results also indicate that the maximum evaporative depth may vary between 28 and 148 cm and is highly dependent on localized lithology within the SDA

Quantifying sediment sources in a lowland agricultural catchment pond using {sup 137}Cs activities and radiogenic {sup 87}Sr/{sup 86}Sr ratios

Energy Technology Data Exchange (ETDEWEB)

Le Gall, Marion; Evrard, Olivier [Laboratoire des Sciences et de l' Environnement, UMR 8212 (CEA/CNRS/UVSQ), Université Paris-Saclay, Domaine du CNRS, Avenue de la Terrasse, 91198 Gif-sur-Yvette Cedex (France); Foucher, Anthony [E.A 6293, Laboratoire GéoHydrosystèmes Continentaux (GéHCO), Université F. Rabelais de Tours, Faculté des Sciences et Techniques, Parc de Grandmont, 37200 Tours (France); Laceby, J. Patrick [Laboratoire des Sciences et de l' Environnement, UMR 8212 (CEA/CNRS/UVSQ), Université Paris-Saclay, Domaine du CNRS, Avenue de la Terrasse, 91198 Gif-sur-Yvette Cedex (France); Salvador-Blanes, Sébastien [E.A 6293, Laboratoire GéoHydrosystèmes Continentaux (GéHCO), Université F. Rabelais de Tours, Faculté des Sciences et Techniques, Parc de Grandmont, 37200 Tours (France); Thil, François; Dapoigny, Arnaud; Lefèvre, Irène [Laboratoire des Sciences et de l' Environnement, UMR 8212 (CEA/CNRS/UVSQ), Université Paris-Saclay, Domaine du CNRS, Avenue de la Terrasse, 91198 Gif-sur-Yvette Cedex (France); Cerdan, Olivier [Département Risques et Prévention, Bureau de Recherches Géologiques et Minières, 3 avenue Claude Guillemin, 45060 Orléans (France); and others

2016-10-01

Soil erosion often supplies high sediment loads to rivers, degrading water quality and contributing to the siltation of reservoirs and lowland river channels. These impacts are exacerbated in agricultural catchments where modifications in land management and agricultural practices were shown to accelerate sediment supply. In this study, sediment sources were identified with a novel tracing approach combining cesium ({sup 137}Cs) and strontium isotopes ({sup 87}Sr/{sup 86}Sr) in the Louroux pond, at the outlet of a lowland cultivated catchment (24 km{sup 2}, Loire River basin, France) representative of drained agricultural areas of Northwestern Europe. Surface soil (n = 36) and subsurface channel bank (n = 17) samples were collected to characterize potential sources. Deposited sediment (n = 41) was sampled across the entire surface of the pond to examine spatial variation in sediment deposits. In addition, a 1.10 m sediment core was sampled in the middle of the pond to reconstruct source variations throughout time. {sup 137}Cs was used to discriminate between surface and subsurface sources, whereas {sup 87}Sr/{sup 86}Sr ratios discriminated between lithological sources. A distribution modeling approach quantified the relative contribution of these sources to the sampled sediment. Results indicate that surface sources contributed to the majority of pond (μ 82%, σ 1%) and core (μ 88%, σ 2%) sediment with elevated subsurface contributions modeled near specific sites close to the banks of the Louroux pond. Contributions of the lithological sources were well mixed in surface sediment across the pond (i.e., carbonate sediment contribution, μ 48%, σ 1% and non-carbonate sediment contribution, μ 52%, σ 3%) although there were significant variations of these source contributions modeled for the sediment core between 1955 and 2013. These fluctuations reflect both the progressive implementation of land consolidation schemes in the catchment and the eutrophication of

Geoelectric imaging for saline water intrusion in Geopark zone of Ciletuh Bay, Indonesia

Science.gov (United States)

Ardi, N. D.; Iryanti, M.; Asmoro, C. P.; Yusuf, A.; Sundana, A. N. A.; Safura, H. Y.; Fitri, M.; Anggraeni, M.; Kurniawan, R.; Afrianti, R.; Sumarni

2018-05-01

Saline water intrusion in estuary is an urgent ecological encounter across the world. The Ciletuh Bay, located in the southern Sukabumi district, is an area with high cultivated potential becoming one of the most important geology tourism zones in Indonesia. However, salt water intrusion along the creek is a natural spectacle that disturbs the economic growth of the whole region. This research was intended at plotting the subsurface level of saltwater interventions into aquifers at the northern part of Ciletuh creek, Indonesia. The study implemented geoelectric imaging methods. 37 imaging datum were acquired using Wenner array configuration. The saline water were identified across the study area. The result of two dimensional cross-sectional resistivity shows that there is an indication of sea content in our measured soil, i.e. the smallest resistivity value is 0.579 Ωm found at a depth of 12.4 m to 19.8 m at a track length of 35 m to 60 m is categorized in the clayey which shows low groundwater quality. However, when compared with the results of direct observation of groundwater from the wells of residents, the water obtained is brackish water. A water chemistry test is conducted to ascertain the initial results of this method so that a potential sea intrusion potential map can be interpreted more clearly. This can consequently help as an extrapolative model to define depth to saline water at any site within the saline water zone in the study area.

Age of ground water and the origin of its salinity in the Leba region

International Nuclear Information System (INIS)

Kwaterkiewicz, A.; Sadurski, A.; Zuber, A.

1999-01-01

Intensive exploitation of ground waters in the Leba region caused a strong increase of salinity, which on the basis of hydrochemistry, was supposed to result from the intrusion of the Baltic Sea water. Environmental isotope data revealed that water in the tertiary sediments is of glacial origin and its salinity is related to the admixture of ascending older waters. (author)

Bioerosion structures in high-salinity marine environments: Evidence from the Al-Khafji coastline, Saudi Arabia

Science.gov (United States)

El-Sorogy, Abdelbaset S.; Alharbi, Talal; Richiano, Sebastián

2018-05-01

Salinity is one the major stress factors that controls the biotic activities in marine environments. In general, the mixture with fresh-water has been mention as a great stress factor, but the opposite, i.e. high-salinity conditions, is less developed in the ichnological literature. Along the Al-Khafji coastline, Saudi Arabia, hard substrates (constituted by gastropods, bivalves and coral skeletons) contain diverse and abundant bioerosion traces and associated encrusters. Field and laboratory observations allowed the recognition of eight ichnospecies belong to the ichnogenera Gastrochaenolites, Entobia, Oichnus, Caulostrepsis and Trypanites, which can be attributed to various activities produced by bivalves, sponges, gastropods and annelids. The borings demonstrate two notable ichnological boring assemblages, namely, Entobia-dominated and Gastrochaenolites-dominated assemblages. The highly diversified bioerosion and encrustation in the studied hard organic substrate indicate a long exposition period of organic substrate with slow to moderate rate of deposition in a restricted (high-salinity) marine environment. This bioerosion study shows that high-salinity, at least for the study area, is not an important controlling factor for ichnology.

Structure and Composition of Mangrove Associations in Tubli Bay of Bahrain as Affected by Municipal Wastewater Discharge and Anthropogenic Sedimentation

Directory of Open Access Journals (Sweden)

Kholoud Abou Seedo

2017-01-01

Full Text Available The effects of municipal wastewater discharge and anthropogenic sedimentation on the structure and composition of gray mangrove (Avicennia marina (Forsk. Vierh. communities along Tubli Bay coastlines in Bahrain were investigated. Growth and regeneration of mangrove were measured, and its community was characterized. Sediment profile was analyzed for texture, pH, and salinity. Mangrove area covered by sand depositions was measured using Google Earth Pro. ANOVA and regression tests were employed in the analysis of the data. Results indicated that mangrove overwhelmingly dominated plant community in the study area, which was zoned by a community of other salt-tolerant species. Three main habitats exist in the study area with high similarity in their floristic composition. Species richness and the number of habitats were low due to the aridity and high sediment salinity. The dilution effect of the secondary treated wastewater had a favorable effect on height and diameters of mangrove trees. However, no differences were observed in leaf area index, basal area, and density of mangrove. The long-term accumulation of anthropogenic sedimentation had a detrimental effect on the mangrove community, expressed in swath death of mangrove trees due to root burials and formation of high topography within the community boundaries.

Macrofaunal recolonization of copper-contaminated sediments in San Diego Bay.

Science.gov (United States)

Neira, Carlos; Mendoza, Guillermo; Porrachia, Magali; Stransky, Chris; Levin, Lisa A

2015-12-30

Effects of Cu-loading on macrofaunal recolonization were examined in Shelter Island Yacht Basin (San Diego Bay, California). Sediments with high and low Cu levels were defaunated and Cu-spiked, translocated, and then placed back into the environment. These demonstrated that the alteration observed in benthic communities associated with Cu contamination occurs during initial recolonization. After a 3-month exposure to sediments with varying Cu levels, two primary colonizing communities were identified: (1) a "mouth assemblage" resembling adjacent background fauna associated with low-Cu levels that was more diverse and predominantly dominated by surface- and subsurface-deposit feeders, burrowers, and tube builders, and (2) a "head assemblage" resembling adjacent background fauna associated with high-Cu concentrations, with few dominant species and an increasing importance of carnivores and mobile epifauna. Cu loading can cause reduced biodiversity and lower structural complexity that may last several months if high concentrations persist, with a direct effect on community functioning. Copyright © 2015 Elsevier Ltd. All rights reserved.

Effects of high salinity wastewater on methanogenic sludge bed systems

NARCIS (Netherlands)

Ismail, S.; Gonzalez-Contreras, P.A.; Jeison, D.A.; Lier, van J.B.

2008-01-01

The attainable loading potentials of anaerobic sludge bed systems are strongly dependent on the growth of granular biomass with a particular wastewater. Experiments were conducted to determine the effects of high salinity wastewater on the biological and physical properties of methanogenic sludge.

Modeling tidal marsh distribution with sea-level rise: evaluating the role of vegetation, sediment, and upland habitat in marsh resiliency.

Science.gov (United States)

Schile, Lisa M; Callaway, John C; Morris, James T; Stralberg, Diana; Parker, V Thomas; Kelly, Maggi

2014-01-01

Tidal marshes maintain elevation relative to sea level through accumulation of mineral and organic matter, yet this dynamic accumulation feedback mechanism has not been modeled widely in the context of accelerated sea-level rise. Uncertainties exist about tidal marsh resiliency to accelerated sea-level rise, reduced sediment supply, reduced plant productivity under increased inundation, and limited upland habitat for marsh migration. We examined marsh resiliency under these uncertainties using the Marsh Equilibrium Model, a mechanistic, elevation-based soil cohort model, using a rich data set of plant productivity and physical properties from sites across the estuarine salinity gradient. Four tidal marshes were chosen along this gradient: two islands and two with adjacent uplands. Varying century sea-level rise (52, 100, 165, 180 cm) and suspended sediment concentrations (100%, 50%, and 25% of current concentrations), we simulated marsh accretion across vegetated elevations for 100 years, applying the results to high spatial resolution digital elevation models to quantify potential changes in marsh distributions. At low rates of sea-level rise and mid-high sediment concentrations, all marshes maintained vegetated elevations indicative of mid/high marsh habitat. With century sea-level rise at 100 and 165 cm, marshes shifted to low marsh elevations; mid/high marsh elevations were found only in former uplands. At the highest century sea-level rise and lowest sediment concentrations, the island marshes became dominated by mudflat elevations. Under the same sediment concentrations, low salinity brackish marshes containing highly productive vegetation had slower elevation loss compared to more saline sites with lower productivity. A similar trend was documented when comparing against a marsh accretion model that did not model vegetation feedbacks. Elevation predictions using the Marsh Equilibrium Model highlight the importance of including vegetation responses to sea

High concentration suspended sediment measurments using acontinuous fiber optic in-stream transmissometer

Energy Technology Data Exchange (ETDEWEB)

Campbell, Chris G.; Laycak, Danny T.; Hoppes, William; Tran,Nguyen T.; Shi, Frank G.

2004-05-26

Suspended sediment loads mobilized during high flow periods in rivers and streams are largely uncharacterized. In smaller and intermittent streams, a large storm may transport a majority of the annual sediment budget. Therefore monitoring techniques that can measure high suspended sediment concentrations at semi-continuous time intervals are needed. A Fiber optic In-stream Transmissometer (FIT) is presented for continuous measurement of high concentration suspended sediment in storm runoff. FIT performance and precision were demonstrated to be reasonably good for suspended sediment concentrations up to 10g/L. The FIT was compared to two commercially available turbidity devices and provided better precision and accuracy at both high and low concentrations. Both turbidity devices were unable to collect measurements at concentrations greater than 4 g/L. The FIT and turbidity measurements were sensitive to sediment particle size. Particle size dependence of transmittance and turbidity measurement poses the greatest problem for calibration to suspended sediment concentration. While the FIT was demonstrated to provide acceptable measurements of high suspended sediment concentrations, approaches to real-time suspended sediment detection need to address the particle size dependence in concentration measurements.

The effects of temperature, salinity, and the carbonate system on Mg/Ca in Globigerinoides ruber (white): A global sediment trap calibration

Science.gov (United States)

Gray, William R.; Weldeab, Syee; Lea, David W.; Rosenthal, Yair; Gruber, Nicolas; Donner, Barbara; Fischer, Gerhard

2018-01-01

The Mg/Ca of planktic foraminifera Globigerinoides ruber (white) is a widely applied proxy for tropical and sub-tropical sea-surface temperature. The accuracy with which temperature can be reconstructed depends on how accurately relationships between Mg/Ca and temperature and the multiple secondary controls on Mg/Ca are known; however, these relationships remain poorly quantified under oceanic conditions. Here, we present new calibrations based on 440 sediment trap/plankton tow samples from the Atlantic, Pacific and Indian Oceans, including 130 new samples from the Bay of Bengal/Arabian Sea and the tropical Atlantic Ocean. Our results indicate temperature, salinity and the carbonate system all significantly influence Mg/Ca in G. ruber (white). We propose two calibration models: The first model assumes pH is the controlling carbonate system parameter. In this model, Mg/Ca has a temperature sensitivity of 6.0 ± 0.8%/°C (2σ), a salinity sensitivity of 3.3 ± 2.2%/PSU and a pH sensitivity of - 8.3 ± 7.7%/0.1 pH units; The second model assumes carbonate ion concentration ([3 2-CO]) is the controlling carbonate system parameter. In this model, Mg/Ca has a temperature sensitivity of 6.7 ± 0.8%/°C, a salinity sensitivity of 5.0 ± 3.0%/PSU and a [3 2-CO] sensitivity of - 0.24 ± 0.11%/μmol kg-1. In both models, the temperature sensitivity is significantly lower than the widely-applied sensitivity of 9.0 ± 0.6%/°C. Application of our new calibrations to down-core data from the Last Glacial Maximum, considering whole ocean changes in salinity and carbonate chemistry, indicate a cooling of 2.4 ± 1.6°C in the tropical oceans if pH is the controlling parameter and 1.5 ± 1.4°C if [3 2-CO] is the controlling parameter.

The Lusi eruption site: insights from surface and subsurface investigations

Science.gov (United States)

Mazzini, A.

2017-12-01

The Indonesian Lusi eruption has been spewing boiling water, gas, and sediments since the 29th of May 2006. Initially, numerous aligned eruptions sites appeared along the Watukosek fault system (WFS) that was reactivated after the Yogyakarta earthquake occurring the 27th of May in the Java Island. Within weeks several villages were submerged by boiling mud. The most prominent eruption site was named Lusi. To date Lusi is still active and an area of 7 km2is covered by mud. Since its birth Lusi erupted with a pulsating behaviour. In the framework of the ERC grant "Lusi Lab" we conducted several years of monitoring and regional investigations coupling surface sampling and subsurface imaging in the region around Lusi. Ambient noise tomography studies, obtained with a local network of 31 stations, revealed for the first time subsurface images of the Lusi region and the adjacent Arjuno-Welirang (AW) volcanic complex. Results show that below the AW volcanic complex are present 5km deep magma chambers that are connected, through a defined corridor, with the roots of the Lusi eruption site. The Lusi subsurface shows the presence of a defined vertical hydrothermal plume that extends to at least 5km. Chemical analyses of the seeping fluids sampled from 1) the Lusi plume (using a specifically designed drone), 2) the region around Lusi, and 3) the fumaroles and the hydro thermal springs of AW, revealed striking similarities. More specifically a mantellic signature of the Lusi fluids confirms the scenario that Lusi represents a magmatic-driven hydrothermal system hosted in sedimentary basin. Seismic profiles interpretation, surface mapping, and fluid sampling show that the WFS, connecting AW and extending towards the NE of Java, acted as a preferential pathway for the igneous intrusion and fluids migration towards the subsurface. Petrography and dating of the clasts erupted at Lusi record high temperatures and indicate that the roots of the active conduit extend to at least 5km

The effects of salinity on nitrification using halophilic nitrifiers in a Sequencing Batch Reactor treating hypersaline wastewater.

Science.gov (United States)

Cui, You-Wei; Zhang, Hong-Yu; Ding, Jie-Ran; Peng, Yong-Zhen

2016-04-25

With annual increases in the generation and use of saline wastewater, the need to avoid environmental problems such as eutrophication is critical. A previous study identified ways to start up a halophilic sludge domesticated from estuarine sediments to remove nitrogen from wastewater with a salinity of 30 g/L. This investigation expands that work to explore the impact of salinity on nitrogen removal. This study demonstrated that the mixed halophilic consortia removed nitrogen from wastewater with a salinity of 30-85 g/L. A kinetic analysis showed that halophilic nitrifiers selected based on hypersalinity were characterized by low Ks, μmax and specific ammonium oxidization rates. This explains the decrease in ammonium removal efficiency in the high salinity operational phases. Salinity inhibited ammonia oxidizing bacteria (AOB) activity, as well as the number of dominant AOB, but did not significantly affect the AOB dominant species. Three most dominant AOB lineages in the halophilic sludge were Nitrosomonas marina, Nitrosomonas europaea, and Nitrosococcus mobilis. Nitrosomonas europaea and Nitrosococcus mobilis were mainly affected by salinity, while nitrite accumulation and ammonia loading played the key role in determining the abundance of Nitrosococcus mobilis and Nitrosococcus europaea. The study contributes insights about shifts in halophilic nitrifying bacterial populations.

Where the oil from surface and subsurface plumes deposited during/after Deepwater Horizon oil spill?

Science.gov (United States)

Yan, B.

2016-02-01

The Deepwater Horizon (DwH) oil spill released an estimated 4.9 million barrels (about 200 million gallons) of crude oil into the Gulf of Mexico between April 20, 2010 and July 15, 2010. Though Valentine et al. has linked the elevated oil components in some sediments with the subsurface plume, the sites with fallout from the ocean surface plume has not been identified. This piece of information is critical not only for a comprehensive scientific understanding of the ecosystem response and fate of spill-related pollutants, but also for litigation purposes and future spill response and restoration planning. In this study we focus on testing the hypothesis that marine snow from the surface plume were deposited on the sea floor over a broad area. To do so, we use publicly available data generated as part of the ongoing Natural Resource Damage Assessment (NRDA) process to assess the spatial distribution of petroleum hydrocarbons in the water column and deep-ocean sediments of the Gulf of Mexico. Sensitive hydrocarbon markers are used to differentiate hydrocarbons from surface plume, deep subsurface plume, and in-situ burning. Preliminary results suggest the overlapping but different falling sites of these plumes and the sedimentation process was controlled by various biological, chemical, and physical factors.

The role of floridoside in osmoadaptation of coral-associated algal endosymbionts to high-salinity conditions

KAUST Repository

Ochsenkuhn, Michael A.; Rö thig, Till; D’ Angelo, Cecilia; Wiedenmann, Jö rg; Voolstra, Christian R.

2017-01-01

occur in the Persian/Arabian Gulf and the Red Sea, which also represent the most saline coral habitats. We studied whether Symbiodinium alter their metabolite content in response to high-salinity environments. We found that Symbiodinium cells exposed

Uranium redox transition pathways in acetate-amended sediments

Science.gov (United States)

Bargar, John R.; Williams, Kenneth H.; Campbell, Kate M.; Long, Philip E.; Stubbs, Joanne E.; Suvorova, Elenal I.; Lezama-Pacheco, Juan S.; Alessi, Daniel S.; Stylo, Malgorzata; Webb, Samuel M.; Davis, James A.; Giammar, Daniel E.; Blue, Lisa Y.; Bernier-Latmani, Rizlan

2013-01-01

Redox transitions of uranium [from U(VI) to U(IV)] in low-temperature sediments govern the mobility of uranium in the environment and the accumulation of uranium in ore bodies, and inform our understanding of Earth’s geochemical history. The molecular-scale mechanistic pathways of these transitions determine the U(IV) products formed, thus influencing uranium isotope fractionation, reoxidation, and transport in sediments. Studies that improve our understanding of these pathways have the potential to substantially advance process understanding across a number of earth sciences disciplines. Detailed mechanistic information regarding uranium redox transitions in field sediments is largely nonexistent, owing to the difficulty of directly observing molecular-scale processes in the subsurface and the compositional/physical complexity of subsurface systems. Here, we present results from an in situ study of uranium redox transitions occurring in aquifer sediments under sulfate-reducing conditions. Based on molecular-scale spectroscopic, pore-scale geochemical, and macroscale aqueous evidence, we propose a biotic–abiotic transition pathway in which biomass-hosted mackinawite (FeS) is an electron source to reduce U(VI) to U(IV), which subsequently reacts with biomass to produce monomeric U(IV) species. A species resembling nanoscale uraninite is also present, implying the operation of at least two redox transition pathways. The presence of multiple pathways in low-temperature sediments unifies apparently contrasting prior observations and helps to explain sustained uranium reduction under disparate biogeochemical conditions. These findings have direct implications for our understanding of uranium bioremediation, ore formation, and global geochemical processes.

A geological interpretation of heavy metal concentrations in soils and sediments in the southern Netherlands

NARCIS (Netherlands)

Huisman, D.J.; Vermeulen, F.J.H.; Baker, J.; Veldkamp, A.; Kroonenberg, S.B.; Klaver, G.Th.

1997-01-01

The natural variation in heavy metal contents of subsurface sediments in the southern Netherlands is described, based on a series of 820 bulk geochemical analyses. The detrital heavy metal contents of these sediments show linear correlations with Al as a result of their joint occurrence in

Sediment storage quantification and postglacial evolution of an inner-alpine sedimentary basin (Gradenmoos, Schober Mountains, Austria)

Science.gov (United States)

Götz, J.; Buckel, J.; Otto, J. C.; Schrott, L.

2012-04-01

Knickpoints in longitudinal valley profiles of alpine headwater catchments can be frequently assigned to the lithological and tectonical setting, to damming effects through large (rockfall) deposits, or to the impact of Pleistocene glaciations causing overdeepened basins. As a consequence various sedimentary sinks developed, which frequently interrupt sediment flux in alpine drainage basins. Today these locations may represent landscape archives documenting a sedimentary history of great value for the understanding of alpine landscape evolution. The glacially overdeepened Gradenmoos basin at 1920 m a.s.l. (an alpine lake mire with adjacent floodplain deposits and surrounding slope storage landforms; approx. 4.1 km2) is the most pronounced sink in the studied Gradenbach catchment (32.5 km2). The basin is completely filled up with sediments delivered by mainly fluvial processes, debris flows, and rock falls, it is assumed to be deglaciated since Egesen times and it is expected to archive a continuous stratigraphy of postglacial sedimentation. As the analysis of denudation-accumulation-systems is generally based on back-calculation of stored sediment volumes to a specific sediment delivering area, most reliable results will be consequently obtained (1) if sediment output of the system can be neglected for the investigated period of time, (2) if - due to spatial scale - sediment storage can be assessed quantitatively with a high level of accuracy, and (3) if the sediment contributing area can be clearly delimited. All three aspects are considered to be fulfilled to a high degree within the Gradenmoos basin. Sediment storage is quantified using geophysical methods, core drillings and GIS modelling whereas postglacial reconstruction is based on radiocarbon dating and palynological analyses. Subject to variable subsurface conditions, different geophysical methods were applied to detect bedrock depth. Electrical resistivity surveying (2D/3D) was used most extensively as it

Sediment Biogeochemistry After the Entrance of Cable Bacteria

DEFF Research Database (Denmark)

Risgaard-Petersen, Nils

fields which may strongly modify ionic transports. They form pH extremes, and accelerate the dissolution of iron sulfides, and carbonates in subsurface sediment. They further promote the formation of iron oxides and carbonates at the sediment surface and stimulate the removal of sulfides......, sulfide-rich coastal sediments, salt marshes seasonally hypoxic basins, subtidal coastal mud plains, as well as freshwater sediments and waterlogged soils. In this talk I will review our current knowledge on how cable bacteria influence the biogeochemistry of sediments. The cable bacteria form electric...... and the formation of sulfate[3] Field studies conducted in the marine environment indicate that some of these effects are expressed in a way that marine systems with active cable bacteria populations have elevated phosphorus-retention{Sulu-Gambari, 2016 #1501} and acts as strong buffers against adverse stage...

The Diffusive Boundary-Layer of Sediments - Oxygen Microgradients Over a Microbial Mat

DEFF Research Database (Denmark)

JØRGENSEN, BB; MARAIS, DJD

1990-01-01

Oxygen microelectrodes were used to analyze the distribution of the diffusive boundary layer (DBL) at the sedimen-water interface in relation to surface topography and flow velocity. The sediment, collected from saline ponds, was covered by a microbial mat that had high oxygen consumption rate...... and well-defined surface structure. Diffusion through the DBL constituted an important rate limitation to the oxygen uptake of the sediment. The mean effective DBL thickness decreased from 0.59 to 0.16 mm as the flow velocity of the overlying water was increased from 0.3 to 7.7 cm s-1 (measured 1 cm above...

Denitrifying sulfide removal process on high-salinity wastewaters.

Science.gov (United States)

Liu, Chunshuang; Zhao, Chaocheng; Wang, Aijie; Guo, Yadong; Lee, Duu-Jong

2015-08-01

Denitrifying sulfide removal (DSR) process comprising both heterotrophic and autotrophic denitrifiers can simultaneously convert nitrate, sulfide, and acetate into nitrogen gas, elemental sulfur (S(0)), and carbon dioxide, respectively. Sulfide- and nitrate-laden wastewaters at 2-35 g/L NaCl were treated by DSR process. A C/N ratio of 3:1 was proposed to maintain high S(0) conversion rate. The granular sludge with a compact structure and smooth outer surface was formed. The microbial communities of DSR consortium via high-throughput sequencing method suggested that salinity shifts the predominating heterotrophic denitrifiers at 10 g/L NaCl.

Transboundary geophysical mapping of geological elements and salinity distribution critical for the assessment of future sea water intrusion in response to sea level rise

DEFF Research Database (Denmark)

Joergensen, F.; Scheer, W.; Thomsen, S.

2012-01-01

Geophysical techniques are increasingly being used as tools for characterising the subsurface, and they are generally required to develop subsurface models that properly delineate the distribution of aquifers and aquitards, salt/freshwater interfaces, and geological structures that affect......, and sand aquifers are all examples of geological structures mapped by the geophysical data that control groundwater flow and to some extent hydrochemistry. Additionally, the data provide an excellent picture of the salinity distribution in the area and thus provide important information on the salt...... revealed. The mapped salinity distribution indicates preferential flow paths through and along specific geological structures within the area. The effects of a future sea level rise on the groundwater system and groundwater chemistry are discussed with special emphasis on the importance of knowing...

Chemotactic behavior of deep subsurface bacteria toward carbohydrates, amino acids and a chlorinated alkene

Energy Technology Data Exchange (ETDEWEB)

Lopez de Victoria, G. (Puerto Rico Univ., Rio Piedras (Puerto Rico). Dept. of Biology)

1989-02-01

The chemotactic behavior of deep terrestrial subsurface bacteria toward amino acids, carbohydrates and trichloroethylene was assayed using a modification of the capillary method and bacterial enumeration by acridine orange direct counts. Eleven isolates of bacteria isolated from six different geological formations were investigated. A bimodal response rather than an absolute positive or negative response was observed in most assays. Most of the isolates were positively chemotactic to low concentrations of substrates and were repelled by high concentrations of the same substrate. However, this was not the case for trichloroethylene (TCE) which was mostly an attractant and elicited the highest responses in all the isolates when compared with amino acids and carbohydrates. The movement rates of these isolates in aseptic subsurface sediments in the absence and presence of TCE were also determined using a laboratory model. All of the isolates showed distinct response range, peak, and threshold concentrations when exposed to the same substrates suggesting that they are possibly different species as has been inferred from DNA homology studies. 101 refs., 4 figs., 57 tabs.

Reexamining ultrafiltration and solute transport in groundwater

Science.gov (United States)

Neuzil, C. E.; Person, Mark

2017-06-01

Geologic ultrafiltration—slowing of solutes with respect to flowing groundwater—poses a conundrum: it is consistently observed experimentally in clay-rich lithologies, but has been difficult to identify in subsurface data. Resolving this could be important for clarifying clay and shale transport properties at large scales as well as interpreting solute and isotope patterns for applications ranging from nuclear waste repository siting to understanding fluid transport in tectonically active environments. Simulations of one-dimensional NaCl transport across ultrafiltering clay membrane strata constrained by emerging data on geologic membrane properties showed different ultrafiltration effects than have often been envisioned. In relatively high-permeability advection-dominated regimes, salinity increases occurred mostly within membrane units while their effluent salinity initially fell and then rose to match solute delivery. In relatively low-permeability diffusion-dominated regimes, salinity peaked at the membrane upstream boundary and effluent salinity remained low. In both scenarios, however, only modest salinity changes (up to ˜3 g L-1) occurred because of self-limiting tendencies; membrane efficiency declines as salinity rises, and although sediment compaction increases efficiency, it is also decreases permeability and allows diffusive transport to dominate. It appears difficult for ultrafiltration to generate brines as speculated, but widespread and less extreme ultrafiltration effects in the subsurface could be unrecognized. Conditions needed for ultrafiltration are present in settings that include topographically-driven flow systems, confined aquifer systems subjected to injection or withdrawal, compacting basins, and accretionary complexes.

Mapping and monitoring nuclear waste repositories with subsurface electrical resistivity arrays

International Nuclear Information System (INIS)

Asch, T.; Morrison, H.F.

1987-01-01

The siting and future integrity of nuclear waste repositories is critically dependent on the local ground water regime. Electrical methods seem particularly promising in mapping and monitoring this regime since the electrical conductivity of rocks depends almost entirely on the fluid saturation, salinity and distribution. The most important recent developments in resistivity include the use of numerical modeling and resistivity mapping using subsurface electrodes. The latter yields far greater accuracy and resolution than can be obtained with surface arrays. To illustrate the power of subsurface-surface arrays the authors studied an idealized two dimensional model of a nuclear repository. Since they are interested in emphasizing the anomaly caused by the repository, or subsequent changes over time in its vicinity, the authors discovered that it is very useful to express the apparent resistivity results as percentage differences from either the background (for surface arrays) or from the apparent resistivities observed at a particular depth of the current source (for subsurface arrays). Percent differencing with respect to data at the repository depth dramatically reduce near-surface and topographic effects that usually confound quantitative interpretation of surface surveys. Thus, dc resistivity appears to have great potential for nuclear waste repository mapping and monitoring

Scottish saline lagoons: Impacts and challenges of climate change

Science.gov (United States)

Angus, Stewart

2017-11-01

The majority of Scotland's saline lagoons are located on the low-lying coastlines of the Western Isles and the northern archipelagos of Orkney and Shetland, where recorded annual relative sea level rise rates are among the highest in Scotland. The sediment-impounded lagoons of Orkney and Shetland will either lose their impoundment and become incorporated in marine coastal waters, or become increasingly saline, as relative sea levels rise. The rock-basin lagoons of the Western Isles will retain their restricted exchange with the sea but will also become more saline with rising sea level. Specialist lagoonal organisms tend to have wide salinity tolerances but may succumb to competition from marine counterparts. In all areas, there are sufficient fresh-water inland water bodies with potential to be captured as lagoons to compensate for loss of extent and number, but the specialist lagoon biota tend to have limited dispersal powers. It is thus possible that they will be unable to transfer to their analogue sites before existing lagoons become fully marine, giving conservation managers the problem of deciding on management options: leave natural processes to operate without interference, manage the saline inflow to maintain the current salinity regime, or translocate lagoon organisms perceived as threatened by rising salinities. Timing of conversion and capture is unpredictable due to local topography and complications caused by variable stratification.

Dominant mechanisms for the delivery of fine sediment and phosphorus to fluvial networks draining grassland dominated headwater catchments.

Science.gov (United States)

Perks, M T; Owen, G J; Benskin, C McW H; Jonczyk, J; Deasy, C; Burke, S; Reaney, S M; Haygarth, P M

2015-08-01

Recent advances in monitoring technology have enabled high frequency, in-situ measurements of total phosphorus and total reactive phosphorus to be undertaken with high precision, whilst turbidity can provide an excellent surrogate for suspended sediment. Despite these measurements being fundamental to understanding the mechanisms and flow paths that deliver these constituents to river networks, there is a paucity of such data for headwater agricultural catchments. The aim of this paper is to deduce the dominant mechanisms for the delivery of fine sediment and phosphorus to an upland river network in the UK through characterisation of the temporal variability of hydrological fluxes, and associated soluble and particulate concentrations for the period spanning March 2012-February 2013. An assessment of the factors producing constituent hysteresis is undertaken following factor analysis (FA) on a suite of measured environmental variables representing the fluvial and wider catchment conditions prior to, and during catchment-wide hydrological events. Analysis indicates that suspended sediment is delivered to the fluvial system predominantly via rapidly responding pathways driven by event hydrology. However, evidence of complex, figure-of-eight hysteresis is observed following periods of hydrological quiescence, highlighting the importance of preparatory processes. Sediment delivery via a slow moving, probably sub-surface pathway does occur, albeit infrequently and during low magnitude events at the catchment outlet. Phosphorus is revealed to have a distinct hysteretic response to that of suspended sediment, with sub-surface pathways dominating. However, high magnitude events were observed to exhibit threshold-like behaviour, whereby activation and connection of usually disconnected depositional zones to the fluvial networks results in the movement of vast phosphorus fluxes. Multiple pathways are observed for particulate and soluble constituents, highlighting the

Dehalogenation Activities and Distribution of Reductive Dehalogenase Homologous Genes in Marine Subsurface Sediments▿ †

Science.gov (United States)

Futagami, Taiki; Morono, Yuki; Terada, Takeshi; Kaksonen, Anna H.; Inagaki, Fumio

2009-01-01

Halogenated organic compounds serve as terminal electron acceptors for anaerobic respiration in a diverse range of microorganisms. Here, we report on the widespread distribution and diversity of reductive dehalogenase homologous (rdhA) genes in marine subsurface sediments. A total of 32 putative rdhA phylotypes were detected in sediments from the southeast Pacific off Peru, the eastern equatorial Pacific, the Juan de Fuca Ridge flank off Oregon, and the northwest Pacific off Japan, collected at a maximum depth of 358 m below the seafloor. In addition, significant dehalogenation activity involving 2,4,6-tribromophenol and trichloroethene was observed in sediment slurry from the Nankai Trough Forearc Basin. These results suggest that dehalorespiration is an important energy-yielding pathway in the subseafloor microbial ecosystem. PMID:19749069

Impact of high saline wastewaters on anaerobic granular sludge functionalities

NARCIS (Netherlands)

Jeison, D.A.; Rio, del A.; Lier, van J.B.

2008-01-01

Three UASB reactors were operated at different salinity levels in order to assess the effects on the granular sludge properties. High levels of activity inhibition were observed at sodium concentrations over 7 g Na+/L, which resulted in low applicable organic loading rates and VFA accumulation in

Sediment carbon fate in phreatic karst (Part 1): Conceptual model development

Science.gov (United States)

Husic, A.; Fox, J.; Agouridis, C.; Currens, J.; Ford, W.; Taylor, C.

2017-06-01

Recent research has paid increased attention to quantifying the fate of carbon pools within fluvial networks, but few, if any, studies consider the fate of sediment organic carbon in fluviokarst systems despite that karst landscapes cover 12% of the earth's land surface. The authors develop a conceptual model of sediment carbon fate in karst terrain with specific emphasis upon phreatic karst conduits, i.e., those located below the groundwater table that have the potential to trap surface-derived sediment and turnover carbon. To assist with their conceptual model development, the authors study a phreatic system and apply a mixture of methods traditional and novel to karst studies, including electrical resistivity imaging, well drilling, instantaneous velocimetry, dye tracing, stage recording, discrete and continuous sediment and water quality sampling, and elemental and stable carbon isotope fingerprinting. Results show that the sediment transport carrying capacity of the phreatic karst water is orders of magnitude less than surface streams during storm-activated periods promoting deposition of fine sediments in the phreatic karst. However, the sediment transport carrying capacity is sustained long after the hydrologic event has ended leading to sediment resuspension and prolonged transport. The surficial fine grained laminae occurs in the subsurface karst system; but unlike surface streams, the light-limited conditions of the subsurface karst promotes constant heterotrophy leading to carbon turnover. The coupling of the hydrological processes leads to a conceptual model that frames phreatic karst as a biologically active conveyor of sediment carbon that recharges degraded organic carbon back to surface streams. For example, fluvial sediment is estimated to lose 30% of its organic carbon by mass during a one year temporary residence within the phreatic karst. It is recommended that scientists consider karst pathways when attempting to estimate organic matter stocks

Field experimental observations of highly graded sediment plumes

DEFF Research Database (Denmark)

Hjelmager Jensen, Jacob; Saremi, Sina; Jimenez, Carlos

2015-01-01

A field experiment in the waters off the south-eastern coast of Cyprus was carried out to study near-field formation of sediment plumes from dumping. Different loads of sediment were poured into calm and limpid waters one at the time from just above the sea surface. The associated plumes......-bed positions gives unique insight into the dynamics of the descending plume and near-field dispersion processes, and enables good understanding of flow and sediment transport processes involved from-release-to-deposition of the load in a non-scaled environment. The high resolution images and footages...... are available through the link provided herein. Observations support the development of a detailed multi-fractional sediment plume model....

Stress management skills in the subsurface: H2 stress on thermophilic heterotrophs and methanogens

Science.gov (United States)

Topcuoglu, B. D.; Holden, J. F.

2017-12-01

Marine hyperthermophilic heterotrophs and methanogens belonging to the Thermococcales and Methanococcales are often found in subsurface environments such as coal and shale beds, marine sediments, and oil reservoirs where they encounter H2 stress conditions. It is important to study the H2 stress survival strategies of these organisms and their cooperation with one another for survival to better understand their biogeochemical impact in hot subsurface environments. In this study, we have shown that H2 inhibition changed the growth kinetics and the transcriptome of Thermococcus paralvinellae. We observed a significant decrease in batch phase growth rates and cell concentrations with high H2 background. Produced metabolite production measurements, RNA-seq analyses of differentially expressed genes and in silico experiments we performed with the T. paralvinellae metabolic model showed that T. paralvinellae produces formate by a formate hydrogenlyase to survive H2 inhibition. We have also shown that H2 limitation caused a significant decrease in batch phase growth rates and methane production rates of the methanogen, Methanocaldococcus jannaschii. H2 stress of both organisms can be ameliorated by syntrophic growth. H2 syntrophy was demonstrated in microcosm incubations for a natural assemblage of Thermococcus and hyperthermophilic methanogens present in hydrothermal fluid samples. This project aims to describe how a hyperthermophilic heterotroph and a hyperthermophilic methanogen eliminate H2 stress and explore cooperation among thermophiles in the hot subsurface.

The Serpentinite Subsurface Microbiome

Science.gov (United States)

Schrenk, M. O.; Nelson, B. Y.; Brazelton, W. J.

2011-12-01

Microbial habitats hosted in ultramafic rocks constitute substantial, globally-distributed portions of the subsurface biosphere, occurring both on the continents and beneath the seafloor. The aqueous alteration of ultramafics, in a process known as serpentinization, creates energy rich, high pH conditions, with low concentrations of inorganic carbon which place fundamental constraints upon microbial metabolism and physiology. Despite their importance, very few studies have attempted to directly access and quantify microbial activities and distributions in the serpentinite subsurface microbiome. We have initiated microbiological studies of subsurface seeps and rocks at three separate continental sites of serpentinization in Newfoundland, Italy, and California and compared these results to previous analyses of the Lost City field, near the Mid-Atlantic Ridge. In all cases, microbial cell densities in seep fluids are extremely low, ranging from approximately 100,000 to less than 1,000 cells per milliliter. Culture-independent analyses of 16S rRNA genes revealed low-diversity microbial communities related to Gram-positive Firmicutes and hydrogen-oxidizing bacteria. Interestingly, unlike Lost City, there has been little evidence for significant archaeal populations in the continental subsurface to date. Culturing studies at the sites yielded numerous alkaliphilic isolates on nutrient-rich agar and putative iron-reducing bacteria in anaerobic incubations, many of which are related to known alkaliphilic and subsurface isolates. Finally, metagenomic data reinforce the culturing results, indicating the presence of genes associated with organotrophy, hydrogen oxidation, and iron reduction in seep fluid samples. Our data provide insight into the lifestyles of serpentinite subsurface microbial populations and targets for future quantitative exploration using both biochemical and geochemical approaches.

Structure and composition of oligohaline marsh plant communities exposed to salinity pulses

Science.gov (United States)

Howard, R.J.; Mendelssohn, I.A.

2000-01-01

The response of two oligohaline marsh macrophyte communities to pulses of increased salinity was studied over a single growing season in a greenhouse experiment. The plant communities were allowed a recovery period in freshwater following the pulse events. The experimental treatments included: (1) salinity influx rate (rate of salinity increase from 0 to 12 gl-1); (2) duration of exposure to elevated salinity; and (3) water depth. The communities both included Sagittaria lancifolia L.; the codominant species were Eleocharis palustris (L.) Roemer and J.A. Schultes in community 1 and Schoenoplectus americanus (Pers.) Volk. ex Schinz and R. Keller in community 2. Effects of the treatments on sediment chemical characteristics (salinity, pH, redox potential, and sulfide and ammonium concentrations) and plant community attributes (aboveground and belowground biomass, stem density, leaf tissue nutrients, and species richness) were examined. The treatment effects often interacted to influence sediment and plant communities characteristics following recovery in fresh water. Salinity influx rate per se, however, had little effect on the abiotic or biotic response variables; significant influx effects were found when the 0 gl-1 (zero influx) treatment was compared to the 12 gl-1 treatments, regardless of the rate salinity was raised. A salinity level of 12 gl-1 had negative effects on plant community structure and composition; these effects were usually associated with 3 months of salinity exposure. Water depth often interacted with exposure duration, but increased water depth did independently decrease the values of some community response measures. Community 1 was affected more than community 2 in the most extreme salinity treatment (3 months exposure/15-cm water depth). Although species richness in both communities was reduced, structural changes were more dramatic in community 1. Biomass and stem density were reduced in community 1 overall and in both dominant species

Suspended sediment in a high-Arctic river

DEFF Research Database (Denmark)

Ladegaard-Pedersen, Pernille; Sigsgaard, Charlotte; Kroon, Aart

2017-01-01

-2012) of daily measurements from the high-Artic Zackenberg River in Northeast Greenland to estimate annual suspended sediment fluxes based on four commonly used methods: M1) is the discharge weighted mean and uses direct measurements, while M2-M4) are one uncorrected and two bias corrected rating curves......-1 and 61,000±16,000ty-1. Extreme events with high discharges had a mean duration of 1day. The average suspended sediment flux during extreme events was 17,000±5000ty-1, which constitutes a year-to-year variation of 20-37% of the total annual flux. The most accurate sampling strategy was bi...... extrapolating a continuous concentration trace from measured values. All methods are tested on complete and reduced datasets. The average annual runoff in the period 2005-2012 was 190±25mio·m3 y-1. The different estimation methods gave a range of average annual suspended sediment fluxes between 43,000±10,000ty...

Characterization of Natural Organic Matter in Alluvial Aquifer Sediments: Approaches and Implications for Reactivity

Science.gov (United States)

Fox, P. M.; Nico, P. S.; Hao, Z.; Gilbert, B.; Tfaily, M. M.; Devadoss, J.

2015-12-01

Sediment-associated natural organic matter (NOM) is an extremely complex assemblage of organic molecules with a wide range of sizes, functional groups, and structures, which is intricately associated with mineral particles. The chemical nature of NOM may control its' reactivity towards metals, minerals, enzymes, and bacteria. Organic carbon concentrations in subsurface sediments are typically much lower than in surface soils, posing a distinct challenge for characterization. In this study, we investigated NOM associated with shallow alluvial aquifer sediments in a floodplain of the Colorado River. Total organic carbon (TOC) contents in these subsurface sediments are typically around 0.1%, but can range from 0.03% up to approximately 1.5%. Even at the typical TOC values of 0.1%, the mass of sediment-associated OC is approximately 5000 times higher than the mass of dissolved OC, representing a large pool of carbon that may potentially be mobilized or degraded under changing environmental conditions. Sediment-associated OC is much older than both the depositional age of the alluvial sediments and dissolved OC in the groundwater, indicating that the vast majority of NOM was sequestered by the sediment long before it was deposited in the floodplain. We have characterized the sediment-bound NOM from two locations within the floodplain with differing physical and geochemical properties. One location has relatively low organic carbon (mineral association across different biogeochemical regimes and assess the potential reactivity of various NOM pools.

A paleoenvironmental study of subsurface Quaternary sediments at Wainuiomata, Wellington, New Zealand, and tectonic implications

Energy Technology Data Exchange (ETDEWEB)

Begg, J G; Mildenhall, D C; Lyon, G L; Stephenson, W R; Funnell, R H; Van Dissen, R J; Bannister, S; Brown, L J [Institute of Geological and Nuclear Sciences Ltd., Lower Hutt (New Zealand); Pillans, B; Harper, M A [Research School of Earth Sciences, Victoria University of Wellington, Wellington (New Zealand); Whitton, J [Manaaki Whenua - Landcare Research, Lower Hutt, (New Zealand)

1994-12-31

A stratigraphic drillhole (WS-1) sited on the floor of Wainuiomata Valley near Lower Hutt, revealed a 61.6 m thick Quaternary sequence overlying Torlesse Supergroup greywacke sandstone and argillite. The Quaternary sediments consist of three sequences separated by disconformities. The lower sequence, 10.7 m thick (61.6-50.9 m), consists of fluvial sediments of probable early Quaternary age. The middle sequence, about 48.3 m in thickness (50.9-c. 2.6 m), spans most of the Last Glaciation. Fluvial/overbnak (50.9-42.0 m), floodplain/swamp (42.9-34.5 m), and fluvial (34.5-31.3 m) sediments overlie the disconformity at 50.9 m. Conformably overlying these sediments are swamp and lacustrine deposits between 31.3 and 4.1 m. Diatoms and algal spores and coenobia show the existence of an extensive lake during much of this sequence, from 25.6 to 4.0 m. at the peak of its development, at a drillhole depth of c. 23 m, the lake was >10 m deep and had a high algal biomass. Kawakawa Tephra (22 600 yr b.p.) occurs near the top of the middle sequence at 4.1 m depth. The upper sequence, of Holocene-Recent age, is <2.6 m thick, including .06 m of fill. The existence of sediments of the lower sequence of at least Castlecliffian age (early Pleistocene) uncomformably overlying basement greywacke provides a minimum age for the K-surface in the area. The Last Glacial sediments show evidence of ponfing, which may be a result of one factor or a more of the following: ponding behind an aggradational terrace of the Wainuiomata River; landslide blockage of the Black Stream drainage near its confluence with Wainuiomata River; and tectonic deformation. Progressive tectonic deformation since the start of the Last Glaciation is considered the most likely dominant factor. This has resulted in the elevation of greywacke basement near the junction of Black Stream and Wainuiomata River. The nature of the deformation - faulting, tilting, and/or folding - has not been established. 38 refs,6 figs,2 tables.

A paleoenvironmental study of subsurface Quaternary sediments at Wainuiomata, Wellington, New Zealand, and tectonic implications

International Nuclear Information System (INIS)

Begg, J.G.; Mildenhall, D.C.; Lyon, G.L.; Stephenson, W.R.; Funnell, R.H.; Van Dissen, R.J.; Bannister, S.; Brown, L.J.; Pillans, B.; Harper, M.A.; Whitton, J.

1993-01-01

A stratigraphic drillhole (WS-1) sited on the floor of Wainuiomata Valley near Lower Hutt, revealed a 61.6 m thick Quaternary sequence overlying Torlesse Supergroup greywacke sandstone and argillite. The Quaternary sediments consist of three sequences separated by disconformities. The lower sequence, 10.7 m thick (61.6-50.9 m), consists of fluvial sediments of probable early Quaternary age. The middle sequence, about 48.3 m in thickness (50.9-c. 2.6 m), spans most of the Last Glaciation. Fluvial/overbnak (50.9-42.0 m), floodplain/swamp (42.9-34.5 m), and fluvial (34.5-31.3 m) sediments overlie the disconformity at 50.9 m. Conformably overlying these sediments are swamp and lacustrine deposits between 31.3 and 4.1 m. Diatoms and algal spores and coenobia show the existence of an extensive lake during much of this sequence, from 25.6 to 4.0 m. at the peak of its development, at a drillhole depth of c. 23 m, the lake was >10 m deep and had a high algal biomass. Kawakawa Tephra (22 600 yr b.p.) occurs near the top of the middle sequence at 4.1 m depth. The upper sequence, of Holocene-Recent age, is <2.6 m thick, including .06 m of fill. The existence of sediments of the lower sequence of at least Castlecliffian age (early Pleistocene) uncomformably overlying basement greywacke provides a minimum age for the K-surface in the area. The Last Glacial sediments show evidence of ponfing, which may be a result of one factor or a combination of the following: ponding behind an aggradational terrace of the Wainuiomata River; landslide blockage of the Black Stream drainage near its confluence with Wainuiomata River; and tectonic deformation. Progressive tectonic deformation since about the start of the Last Glaciation is considered the most likely dominant factor. This has resulted in the elevation of greywacke basement near the junction of Black Stream and Wainuiomata River. The nature of the deformation - faulting, tilting, and/or folding - has not been established. (authors

High-resolution model for estimating the economic and policy implications of agricultural soil salinization in California

Science.gov (United States)

Welle, Paul D.; Mauter, Meagan S.

2017-09-01

This work introduces a generalizable approach for estimating the field-scale agricultural yield losses due to soil salinization. When integrated with regional data on crop yields and prices, this model provides high-resolution estimates for revenue losses over large agricultural regions. These methods account for the uncertainty inherent in model inputs derived from satellites, experimental field data, and interpreted model results. We apply this method to estimate the effect of soil salinity on agricultural outputs in California, performing the analysis with both high-resolution (i.e. field scale) and low-resolution (i.e. county-scale) data sources to highlight the importance of spatial resolution in agricultural analysis. We estimate that soil salinity reduced agricultural revenues by 3.7 billion (1.7-7.0 billion) in 2014, amounting to 8.0 million tons of lost production relative to soil salinities below the crop-specific thresholds. When using low-resolution data sources, we find that the costs of salinization are underestimated by a factor of three. These results highlight the need for high-resolution data in agro-environmental assessment as well as the challenges associated with their integration.

Desulfotomaculum spp. and related Gram-positive sulfate-reducing bacteria in deep subsurface environments.

Directory of Open Access Journals (Sweden)

Thomas eAullo

2013-12-01

Full Text Available Gram-positive spore-forming sulfate reducers and particularly members of the genus Desulfotomaculum are commonly found in the subsurface biosphere by culture based and molecular approaches. Due to their metabolic versatility and their ability to persist as endospores. Desulfotomaculum spp. are well adapted for colonizing environments through a slow sedimentation process. Because of their ability to grow autotrophically (H2/CO2 and produce sulfide or acetate, these microorganisms may play key roles in deep lithoautotrophic microbial communities. Available data about Desulfotomaculum spp. and related species from studies carried out from deep freshwater lakes, marine sediments, oligotrophic and organic rich deep geological settings are discussed in this review.

Field experimental observations of highly graded sediment plumes.

Science.gov (United States)

Jensen, Jacob Hjelmager; Saremi, Sina; Jimenez, Carlos; Hadjioannou, Louis

2015-06-15

A field experiment in the waters off the south-eastern coast of Cyprus was carried out to study near-field formation of sediment plumes from dumping. Different loads of sediment were poured into calm and limpid waters one at the time from just above the sea surface. The associated plumes, gravitating towards the seafloor, were filmed simultaneously by four divers situated at different depths in the water column, and facing the plume at different angles. The processes were captured using GoPro-Hero-series cameras. The high-quality underwater footage from near-surface, mid-depth and near-bed positions gives unique insight into the dynamics of the descending plume and near-field dispersion processes, and enables good understanding of flow and sediment transport processes involved from-release-to-deposition of the load in a non-scaled environment. The high resolution images and footages are available through the link provided herein. Observations support the development of a detailed multi-fractional sediment plume model. Copyright © 2015 Elsevier Ltd. All rights reserved.

Transport zonation limits coupled nitrification-denitrification in permeable sediments

DEFF Research Database (Denmark)

Kessler, Adam John; Glud, R.N.; Cardenas, M.B.

2013-01-01

- and N-15-N-2 gas. The measured two-dimensional profiles correlate with computational model simulations, showing a deep pool of N-2 gas forming, and being advected to the surface below ripple peaks. Further isotope pairing calculations on these data indicate that coupled nitrification......-denitrification is severely limited in permeable sediments because the flow and transport field limits interaction between oxic and anoxic pore water. The approach allowed for new detailed insight into subsurface denitrification zones in complex permeable sediments....

Golden alga presence and abundance are inversely related to salinity in a high-salinity river ecosystem, Pecos River, USA

Science.gov (United States)

Israël, Natascha M.D.; VanLandeghem, Matthew M.; Denny, Shawn; Ingle, John; Patino, Reynaldo

2014-01-01

Prymnesium parvum (golden alga, GA) is a toxigenic harmful alga native to marine ecosystems that has also affected brackish inland waters. The first toxic bloom of GA in the western hemisphere occurred in the Pecos River, one of the saltiest rivers in North America. Environmental factors (water quality) associated with GA occurrence in this basin, however, have not been examined. Water quality and GA presence and abundance were determined at eight sites in the Pecos River basin with or without prior history of toxic blooms. Sampling was conducted monthly from January 2012 to July 2013. Specific conductance (salinity) varied spatiotemporally between 4408 and 73,786 mS/cm. Results of graphical, principal component (PCA), and zero-inflated Poisson (ZIP) regression analyses indicated that the incidence and abundance of GA are reduced as salinity increases spatiotemporally. LOWESS regression and correlation analyses of archived data for specific conductance and GA abundance at one of the study sites retrospectively confirmed the negative association between these variables. Results of PCA also suggested that at <15,000 mS/cm, GA was present at a relatively wide range of nutrient (nitrogen and phosphorus) concentrations whereas at higher salinity, GA was observed only at mid-to-high nutrient levels. Generally consistent with earlier studies, results of ZIP regression indicated that GA presence is positively associated with organic phosphorus and in samples where GA is present, GA abundance is positively associated with organic nitrogen and negatively associated with inorganic nitrogen. This is the first report of an inverse relation between salinity and GA presence and abundance in riverine waters and of interaction effects of salinity and nutrients in the field. These observations contribute to a more complete understanding of environmental conditions that influence GA distribution in inland waters.

Relationship of subseafloor microbial diversity to sediment age and organic carbon content

Science.gov (United States)

Walsh, E. A.; Kirkpatrick, J. B.; Sogin, M. L.; D'Hondt, S. L.

2013-12-01

Our tag pyrosequencing investigation of four globally distant sites reveals sediment age and total organic carbon content to be significant components in understanding subseafloor diversity. Our sampling locations include two sites from high-productivity regions (Indian Ocean and Bering Sea) and two from moderate-productivity (eastern and central equatorial Pacific Ocean). Sediment from the high-productivity sites has much higher TOC than sediment from the moderate-productivity equatorial sites. We applied a high-resolution 16S V4-V6 tag pyrosequencing approach to 24 bacterial and 17 archaeal samples, totaling 602,502 reads. We identified1,291 archaeal and 15,910 bacterial OTUs (97%) from these reads. We analyzed bacterial samples from all four sites in addition to archaeal samples from our high productivity sites. These high productivity, high TOC sites have a pronounced methane-rich sulfate-free zone at depth from which archaea have been previously considered to dominate (Biddle et al., 2006). At all four locations, microbial diversity is highest near the seafloor and drops rapidly to low but stable values with increasing sediment depth. The depth at which diversity stabilizes varies greatly from site to site, but the age at which it stabilizes is relatively constant. At all four sites, diversity reaches low stable values a few hundred thousand years after sediment deposition. The sites with high total organic carbon (high productivity sites) generally exhibit higher diversity at each sediment age than the sites with lower total organic carbon (moderate-productivity sites). Archaeal diversity is lower than bacterial diversity at every sampled depth. Biddle, J.F., Lipp, J.S., Lever, M.A., Lloyd, K.G., Sørensen, K.B., Anderson, R. et al. (2006) Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru. PNAS 103: 3846-3851.

Water sources accessed by arid zone riparian trees in highly saline environments, Australia.

Science.gov (United States)

Costelloe, Justin F; Payne, Emily; Woodrow, Ian E; Irvine, Elizabeth C; Western, Andrew W; Leaney, Fred W

2008-05-01

The flow regimes of arid zone rivers are often highly variable, and shallow groundwater in the alluvial aquifers can be very saline, thus constraining the availability and quality of the major water sources available to riparian trees-soil water, shallow groundwater and stream water. We have identified water sources and strategies used by riparian trees in more highly saline and arid conditions than previously studied for riparian trees of arid zone rivers. Our research focused on the riparian species Eucalyptus coolabah, one of the major riparian trees of ephemeral arid zone rivers in Australia. The water sources available to this riparian tree were examined using delta(18)O isotope data from xylem, soil water, groundwater and surface water. Additionally, soil chloride and matric potential data were used to infer zones of water availability for root uptake. Despite the saline conditions, the trees used a mixture of soil water and groundwater sources, but they did not use surface water directly. The study identified three strategies used to cope with typically high groundwater and soil water salinities. Firstly, the trees preferentially grow in zones of most frequent flushing by infiltrating streamflow, such as the bank-tops of channels. Secondly, the trees limit water use by having low transpiration rates. Thirdly, the trees are able to extract water at very low osmotic potentials, with water uptake continuing at chloride concentrations of at least 20,000-30,000 mg L(-1).

The early quaternary sediments above the Gorleben salt dome

International Nuclear Information System (INIS)

Mueller, H.

1986-01-01

About 1500 borehole samples from the 90 m thick pre-Elsterian Pleistocene sediments above the Gorleben salt dome were studied to establish the palynostratigraphy of the main part of the still poorly known 'Cromerian Complex'. With the exception of two isolated sink holes above the gypsum cap rock, which developed during the early Bavelian, the investigated pre-Elsterian Pleistocene sediments were deposited in a very shallow lake, similar to the present-day Steinhuder Meer (NW Germany). Therefore, subrosion (subsurface erosion of salt) and sedimentation kept pace with each other during this time interval. Small discordances - similar to those in the Holocene sediments of the Steinhuder Meer - are frequent, but do not hamper the close correlation (to within 1 cm) between the different boreholes. (orig.) [de

The early quaternary sediments above the Gorleben salt dome

International Nuclear Information System (INIS)

Mueller, H.

1986-01-01

About 1500 borehole samples from the 90 m thick pre-Elsterian Pleistocene sediments above the Gorleben salt dome were studied to establish the palynostratigraphy of the main part of the still poorly known 'Cromerian Complex'. With the exception of two isolated sink holes above the gypsum cap rock, which developed during the early Bavelian, the investigated pre-Elsterian Pleistocene sediments were deposited in a very shallow lake, similar to the present-day Steinhuder Meer (NW Germany). Therefore, subrosion (subsurface erosion of salt) and sedimentation kept pace with each other during this time interval. Small discordances - similar to those in the Holocene sediments of the Steinhuder Meer - are frequent, but do not hamper the close correlation (to within 1 cm) between the different boreholes. (orig./PW) [de

Lentibacillus amyloliquefaciens sp. nov., a halophilic bacterium isolated from saline sediment sample.

Science.gov (United States)

Wang, Jing-Li; Ma, Ke-Dong; Wang, Yan-Wei; Wang, Hui-Min; Li, Yan-Bin; Zhou, Shan; Chen, Xiao-Rong; Kong, De-Long; Guo, Xiang; He, Ming-Xiong; Ruan, Zhi-Yong

2016-02-01

A Gram-stain positive, non-motile, non-sporogenous, aerobic, rod-shaped and halophilic bacterium, designated LAM0015(T), was isolated from a saline sediment sample collected from Yantai City in China. The isolate was found to be able to grow at NaCl concentrations of 5-25 % (w/v) (optimum: 7-12 %), 15-45 °C (optimum: 35 °C) and pH 5.0-9.0 (optimum: 7.0). The major fatty acids were determined to be anteiso-C15:0 and anteiso-C17:0. The predominant respiratory quinone was identified as MK-7. The cell wall peptidoglycan was determined to contain meso-diaminopimelic acid. The polar lipids were found to be diphosphatidyglycerol, phosphatidylglycerol, five phospholipids and one glycolipid. The DNA G+C content was 43.1 mol% as determined by the T m method. Analysis of the 16S rRNA gene sequence indicated that the isolate belongs within the genus Lentibacillus and is closely related to Lentibacillus persicus DSM 22530(T), Lentibacillus salicampi JCM 11462(T) and Lentibacillus jeotgali JCM 15795(T) with 97.3, 96.7 and 96.4 % sequence similarity, respectively. The DNA-DNA hybridization value between LAM0015(T) and L. persicus DSM 22530(T) was 51.2 ± 1.4 %. Based on its phenotypic, phylogenetic and chemotaxonomic characteristics, strain LAM0015(T) is concluded to represent a novel species of the genus Lentibacillus, for which the name Lentibacillus amyloliquefaciens sp. nov. is proposed. The type strain is LAM0015(T) (=ACCC 06401(T) = JCM 19838(T)).

Effects of high salinity from desalination brine on growth, photosynthesis, water relations and osmolyte concentrations of seagrass Posidonia australis

International Nuclear Information System (INIS)

Cambridge, M L; Zavala-Perez, A; Cawthray, G R; Mondon, J; Kendrick, G A

2017-01-01

Highly saline brines from desalination plants expose seagrass communities to salt stress. We examined effects of raised salinity (46 and 54 psu) compared with seawater controls (37 psu) over 6 weeks on the seagrass, Posidonia australis, growing in tanks with the aim of separating effects of salinity from other potentially deleterious components of brine and determining appropriate bioindicators. Plants survived exposures of 2–4 weeks at 54 psu, the maximum salinity of brine released from a nearby desalination plant. Salinity significantly reduced maximum quantum yield of PSII (chlorophyll a fluorescence emissions). Leaf water potential (Ψ w ) and osmotic potential (Ψ π ) were more negative at increased salinity, while turgor pressure (Ψ p ) was unaffected. Leaf concentrations of K + and Ca 2+ decreased, whereas concentrations of sugars (mainly sucrose) and amino acids increased. We recommend leaf osmolarity, ion, sugar and amino acid concentrations as bioindicators for salinity effects, associated with brine released in desalination plant outfalls. - Highlights: • We separated salt effects of desalination brine from other deleterious components. • Sublethal salinity stress depended on both salinity increase and exposure time. • Very effective osmoregulation led to tolerance of short intervals of high salinity.

Diversity of cultivated aerobic poly-hydrolytic bacteria in saline alkaline soils

NARCIS (Netherlands)

Sorokin, Dimitry Y.; Kolganova, Tatiana V.; Khijniak, Tatiana V.; Jones, Brian E.; Kublanov, Ilya V.

2017-01-01

Alkaline saline soils, known also as ''soda solonchaks'', represent a natural soda habitat which differs from soda lake sediments by higher aeration and lower humidity. The microbiology of soda soils, in contrast to the more intensively studied soda lakes, remains poorly explored. In this work we

Microbial communities in the deep subsurface

Science.gov (United States)

Krumholz, Lee R.

The diversity of microbial populations and microbial communities within the earth's subsurface is summarized in this review. Scientists are currently exploring the subsurface and addressing questions of microbial diversity, the interactions among microorganisms, and mechanisms for maintenance of subsurface microbial communities. Heterotrophic anaerobic microbial communities exist in relatively permeable sandstone or sandy sediments, located adjacent to organic-rich deposits. These microorganisms appear to be maintained by the consumption of organic compounds derived from adjacent deposits. Sources of organic material serving as electron donors include lignite-rich Eocene sediments beneath the Texas coastal plain, organic-rich Cretaceous shales from the southwestern US, as well as Cretaceous clays containing organic materials and fermentative bacteria from the Atlantic Coastal Plain. Additionally, highly diverse microbial communities occur in regions where a source of organic matter is not apparent but where igneous rock is present. Examples include the basalt-rich subsurface of the Columbia River valley and the granitic subsurface regions of Sweden and Canada. These subsurface microbial communities appear to be maintained by the action of lithotrophic bacteria growing on H2 that is chemically generated within the subsurface. Other deep-dwelling microbial communities exist within the deep sediments of oceans. These systems often rely on anaerobic metabolism and sulfate reduction. Microbial colonization extends to the depths below which high temperatures limit the ability of microbes to survive. Energy sources for the organisms living in the oceanic subsurface may originate as oceanic sedimentary deposits. In this review, each of these microbial communities is discussed in detail with specific reference to their energy sources, their observed growth patterns, and their diverse composition. This information is critical to develop further understanding of subsurface

SUBSURFACE REPOSITORY INTEGRATED CONTROL SYSTEM DESIGN

International Nuclear Information System (INIS)

Randle, D.C.

2000-01-01

The primary purpose of this document is to develop a preliminary high-level functional and physical control system architecture for the potential repository at Yucca Mountain. This document outlines an overall control system concept that encompasses and integrates the many diverse process and communication systems being developed for the subsurface repository design. This document presents integrated design concepts for monitoring and controlling the diverse set of subsurface operations. The Subsurface Repository Integrated Control System design will be composed of a series of diverse process systems and communication networks. The subsurface repository design contains many systems related to instrumentation and control (I andC) for both repository development and waste emplacement operations. These systems include waste emplacement, waste retrieval, ventilation, radiological and air monitoring, rail transportation, construction development, utility systems (electrical, lighting, water, compressed air, etc.), fire protection, backfill emplacement, and performance confirmation. Each of these systems involves some level of I andC and will typically be integrated over a data communications network throughout the subsurface facility. The subsurface I andC systems will also interface with multiple surface-based systems such as site operations, rail transportation, security and safeguards, and electrical/piped utilities. In addition to the I andC systems, the subsurface repository design also contains systems related to voice and video communications. The components for each of these systems will be distributed and linked over voice and video communication networks throughout the subsurface facility. The scope and primary objectives of this design analysis are to: (1) Identify preliminary system-level functions and interfaces (Section 6.2). (2) Examine the overall system complexity and determine how and on what levels the engineered process systems will be monitored

Patterns of microbial activity in the shallow bottom sediments of Lake ...

African Journals Online (AJOL)

FDA), was investigated in two sediment cores collected from Manzala Lake during November 2011. FDA hydrolysis positively correlated with total bacterial counts, bacterial biomass and chlorophyll a in both cores. The 10–20 cm subsurface layer ...

Distribution and partitioning of heavy metals in estuarine sediment cores and implications for the use of sediment quality standards

Directory of Open Access Journals (Sweden)

K. L. Spencer

2002-01-01

Full Text Available Total metal concentrations in surface sediments and historically contaminated sediments were determined in sediment cores collected from three estuaries (Thames, Medway and Blackwater in south-east England. The partitioning behaviour of metals in these sediments was also determined using a sequential extraction scheme. These data were then compared with sediment quality values (SQVs to determine the potential ecotoxicological risk to sediment dwelling organisms. When total metal concentrations in surface sediments are examined, no risk to biota in any of the estuaries is indicated. However, when historically contaminated sediments at depth are also considered, risks to biota are apparent and are greatest for the Thames, followed by the Medway and then the Blackwater. This suggests that regulatory authorities should examine vertical metal profiles, particularly in estuaries that are experiencing low sediment accumulation rates where historically contaminated sediments are in the shallow sub-surface zone and where erosion or dredging activities may take place. When metal partitioning characteristics are also considered, the risk to biota is comparable for the Medway and the Blackwater with the potentially bioavailable fraction presenting no ecotoxicological risk. Conversely, over 70% of metals are labile in the Thames Estuary sediments and toxic effects are probable. This suggests that the application of SQVs using total sediment metal concentrations may over- or under-estimate the risk to biota in geochemically dissimilar estuarine sediments. Keywords: sediment quality values, estuarine sediments, metal contamination, partitioning, sequential extraction

Shallow groundwater and soil chemistry response to 3 years of subsurface drip irrigation using coalbed-methane-produced water

Energy Technology Data Exchange (ETDEWEB)

Bern, C. R.; Boehlke, A. R.; Engle, M. A.; Geboy, N. J.; Schroeder, K. T.; Zupancic, J. W.

2013-10-04

Disposal of produced waters, pumped to the surface as part of coalbed methane (CBM) development, is a significant environmental issue in the Wyoming portion of the Powder River Basin, USA. High sodium adsorption ratios (SAR) of the waters could degrade agricultural land, especially if directly applied to the soil surface. One method of disposing of CBM water, while deriving beneficial use, is subsurface drip irrigation (SDI), where acidified CBM waters are applied to alfalfa fields year-round via tubing buried 0.92 m deep. Effects of the method were studied on an alluvial terrace with a relatively shallow depth to water table (~3 m). Excess irrigation water caused the water table to rise, even temporarily reaching the depth of drip tubing. The rise corresponded to increased salinity in some monitoring wells. Three factors appeared to drive increased groundwater salinity: (1) CBM solutes, concentrated by evapotranspiration; (2) gypsum dissolution, apparently enhanced by cation exchange; and (3) dissolution of native Na–Mg–SO{sub 4} salts more soluble than gypsum. Irrigation with high SAR (24) water has increased soil saturated paste SAR up to 15 near the drip tubing. Importantly though, little change in SAR has occurred at the surface.

Shallow groundwater and soil chemistry response to 3 years of subsurface drip irrigation using coalbed-methane-produced water

Science.gov (United States)

Bern, Carleton R.; Boehlke, Adam R.; Engle, Mark A.; Geboy, Nicholas J.; Schroeder, K.T.; Zupancic, J.W.

2013-01-01

Disposal of produced waters, pumped to the surface as part of coalbed methane (CBM) development, is a significant environmental issue in the Wyoming portion of the Powder River Basin, USA. High sodium adsorption ratios (SAR) of the waters could degrade agricultural land, especially if directly applied to the soil surface. One method of disposing of CBM water, while deriving beneficial use, is subsurface drip irrigation (SDI), where acidified CBM waters are applied to alfalfa fields year-round via tubing buried 0.92 m deep. Effects of the method were studied on an alluvial terrace with a relatively shallow depth to water table (∼3 m). Excess irrigation water caused the water table to rise, even temporarily reaching the depth of drip tubing. The rise corresponded to increased salinity in some monitoring wells. Three factors appeared to drive increased groundwater salinity: (1) CBM solutes, concentrated by evapotranspiration; (2) gypsum dissolution, apparently enhanced by cation exchange; and (3) dissolution of native Na–Mg–SO4 salts more soluble than gypsum. Irrigation with high SAR (∼24) water has increased soil saturated paste SAR up to 15 near the drip tubing. Importantly though, little change in SAR has occurred at the surface.

Characterization of sand lenses and their role for subsurface transport in low-permeability clay tills

DEFF Research Database (Denmark)

Kessler, Timo Christian; Klint, K. E.; Nilsson, B.

2011-01-01

Glacial sediments dominate large parts of the geological topology in Denmark. They predominantly consist of lowpermeability tills, but fractures and sand-lenses constitute zones of enhanced permeability facilitating preferential flow. This study focuses on characterization of sand deposits with r...... the sand lenses in hydro-geological models to successfully characterize subsurface flow and transport, e.g. for remediation activities....

Development of subsurface drainage database system for use in environmental management issues

International Nuclear Information System (INIS)

Azhar, A.H.; Rafiq, M.; Alam, M.M.

2007-01-01

A simple user-friendly menue-driven system for database management pertinent to the Impact of Subsurface Drainage Systems on Land and Water Conditions (ISIAW) has been developed for use in environment-management issues of the drainage areas. This database has been developed by integrating four soft wares, viz; Microsoft Excel, MS Word Acrobat and MS Access. The information, in the form of tables and figures, with respect to various drainage projects has been presented in MS Word files. The major data-sets of various subsurface drainage projects included in the ISLaW database are: i) technical aspects, ii) groundwater and soil-salinity aspects, iii) socio-technical aspects, iv) agro-economic aspects, and v) operation and maintenance aspects. The various ISlAW file can be accessed just by clicking at the Menu buttons of the database system. This database not only gives feed back on the functioning of different subsurface drainage projects, with respect to the above-mentioned aspects, but also serves as a resource-document for these data for future studies on other drainage projects. The developed database-system is useful for planners, designers and Farmers Organisations for improved operation of existing drainage projects as well as development of future ones. (author)

Estimation of soil salinity in a drip irrigation system by using joint inversion of multicoil electromagnetic induction measurements

KAUST Repository

Jadoon, Khan Zaib

2015-05-12

Low frequency electromagnetic induction (EMI) is becoming a useful tool for soil characterization due to its fast measurement capability and sensitivity to soil moisture and salinity. In this research, a new EMI system (the CMD mini-Explorer) is used for subsurface characterization of soil salinity in a drip irrigation system via a joint inversion approach of multiconfiguration EMI measurements. EMI measurements were conducted across a farm where Acacia trees are irrigated with brackish water. In situ measurements of vertical bulk electrical conductivity (σb) were recorded in different pits along one of the transects to calibrate the EMI measurements and to compare with the modeled electrical conductivity (σ) obtained by the joint inversion of multiconfiguration EMI measurements. Estimates of σ were then converted into the universal standard of soil salinity measurement (i.e., electrical conductivity of a saturated soil paste extract – ECe). Soil apparent electrical conductivity (ECa) was repeatedly measured with the CMD mini-Explorer to investigate the temperature stability of the new system at a fixed location, where the ambient air temperature increased from 26°C to 46°C. Results indicate that the new EMI system is very stable in high temperature environments, especially above 40°C, where most other approaches give unstable measurements. In addition, the distribution pattern of soil salinity is well estimated quantitatively by the joint inversion of multicomponent EMI measurements. The approach of joint inversion of EMI measurements allows for the quantitative mapping of the soil salinity distribution pattern and can be utilized for the management of soil salinity.

PROTOZOA IN SUBSURFACE SEDIMENTS FROM SITE CONTAMI- NATED WITH AVIATION GASOLINE OR JET FUEL

Science.gov (United States)

Numbers of protozoa in the subsurface of aviation gasoline and jet fuel spill areas at a Coast Guard base at Traverse City, Mich., were determined. Boreholes were drilled in an uncontaminated location, in contaminated but untreated parts of the fuel plumes, and in the aviation ga...

Isolation and characterization of novel hydrocarbon-degrading euryhaline consortia from crude oil and mangrove sediments.

Science.gov (United States)

Piedad Díaz, M; Grigson, S J; Peppiatt, C J; Burgess, J G

2000-11-01

Two novel and versatile bacterial consortia were developed for the biodegradation of hydrocarbons. They were isolated from crude oil from the Cormorant Field in the North Sea (MPD-7) and from sediment associated with mangrove roots (MPD-M). The bacterial consortia were able to degrade both aliphatic and aromatic hydrocarbons in crude oils very effectively in seawater (35 g/L NaCl) and synthetic media containing 0 to 100 g/L NaCl (1.7 M). Salinities over twice that of normal seawater decreased the biodegradation rates. However, even at the highest salinity biodegradation was significant. Ratios of nC17 to pristane and nC18 to phytane were significantly lowered across the range of salinity. The lowest values were at 0 and 20 g/L (0.34 M). Phytane was degraded in preference to pristane. The degradation of these compounds was constant over the salinity range, with evidence of a slight increase for consortium MPD-M with increasing salinity. In general, the consortium isolated from mangrove root sediments was more efficient in metabolizing North Sea crude oil than the consortium isolated from Cormorant crude oil. The 5 strains that comprise MPD-M have been tentatively identified as species of the genera Marinobacter, Bacillus, and Erwinia. This is the first report of hydrocarbon-degrading consortia isolated from crude oil and mangrove sediments that are capable of treating oily wastes over such a wide range of salinity.

Extracting subsurface fingerprints using optical coherence tomography

CSIR Research Space (South Africa)

Akhoury, SS

2015-02-01

Full Text Available Subsurface Fingerprints using Optical Coherence Tomography Sharat Saurabh Akhoury, Luke Nicholas Darlow Modelling and Digital Science, Council for Scientific and Industrial Research, Pretoria, South Africa Abstract Physiologists have found... approach to extract the subsurface fingerprint representation using a high-resolution imaging technology known as Optical Coherence Tomography (OCT). ...

Subsurface Investigations Program at the radioactive waste management complex of the Idaho National Engineering Laboratory. Annual progress report, FY-1985

International Nuclear Information System (INIS)

Hubbell, J.M.; Hull, L.C.; Humphrey, T.G.; Russell, B.F.; Pittman, J.R.; Cannon, K.M.

1985-12-01

This report describes work conducted in FY-85 in support of the Subsurface Investigation Program at the Radioactive Waste Management Complex of the Idaho National Engineering Laboratory. The work is part of a continuing effort to define and predict radionuclide migration from buried waste. The Subsurface Investigation Program is a cooperative study conducted by EG and G Idaho and the US Geological Survey, INEL Office. EG and G is responsible for the shallow drilling, solution chemistry, and net downward flux portions of this program, while the US Geological Survey is responsible for the weighing lysimeters and test trench. Data collection was initiated by drilling, sampling, and instrumenting shallow wells, continuing the installation of test trenches, and modifying the two weighing lysimeters. Twenty-one shallow auger holes were around the Radioactive Waste Management Complex (RWMC) to evaluate radionuclide content in the surficial sediments, to determine the geologic and hydrologic characteristics of the surficial sediments, and to provide as monitoring sites for moisture in these sediments. Eighteen porous cup lysimeters were installed in 12 auger holes to collect soil water samples from the surficial sediments. Fourteen auger holes were instrumented with tensiometers, gypsum blocks and/or psychrometers at various depths throughout the RWMC. Readings from these instruments are taken on a monthly basis

Application of a surface complexation model to the interactions of Pu and Am with Esk Estuary sediments

International Nuclear Information System (INIS)

Turner, D.R.; Knox, S.; Titley, J.G.; Hamilton-Taylor, J.; Kelly, M.; Williams, G.

1990-10-01

Previous work has shown that Pu is remobilised from Esk sediments at low salinities of overlying water. A constant capacitance surface complexation model has been developed in order to understand and model the chemical processes occurring. The model is based on detailed chemical characterisation of sediment samples from the estuary. The following measurements were carried out to provide input parameters for the model: specific surface area; total surface sites (tritium exchange); proton and major ion exchange (potentiometric titration); and actinide (Pu and Am) partition coefficient as a function of pH and salinity at sediment and actinide concentrations typical of the Esk. (author)

Silicon alleviates deleterious effects of high salinity on the halophytic grass Spartina densiflora.

Science.gov (United States)

Mateos-Naranjo, Enrique; Andrades-Moreno, Luis; Davy, Anthony J

2013-02-01

The non-essential element silicon is known to improve plant fitness by alleviating the effects of biotic and abiotic stresses, particularly in crops. However, its possible role in the exceptional tolerance of halophytes to salinity has not been investigated. This study reports the effect of Si supply on the salinity tolerance of the halophytic grass Spartina densiflora; plants were treated with NaCl (0-680 mM), with or without silicon addition of 500 μM, in a glasshouse experiment. Plant responses were examined using growth analysis, combined with measurements of gas exchange, chlorophyll fluorescence and photosynthetic pigment concentrations. In addition, tissue concentrations of aluminium, calcium, copper, iron, potassium, magnesium, sodium, phosphorus and silicon were determined. Although high salinity decreased growth, this effect was alleviated by treatment with Si. Improved growth was associated with higher net photosynthetic rate (A), and greater water-use efficiency (WUE). Enhanced A at high salinity could be explained by beneficial effects of Si on the photochemical apparatus, and on chlorophyll concentrations. Ameliorative effects of Si were correlated with reduced sodium uptake, which was unrelated to a reduction in the transpiration rate, since Si-supplemented plants had higher stomatal conductances (G(s)). These plants also had higher tissue concentrations of essential nutrients, suggesting that Si had a positive effect on the mineral nutrient balance in salt-stressed plants. Si appears to play a significant role in salinity tolerance even in a halophyte, which has other, specific salt-tolerance mechanisms, through diverse protective effects on the photosynthetic apparatus, water-use efficiency and mineral nutrient balance. Copyright © 2012 Elsevier Masson SAS. All rights reserved.

Rapid sediment accumulation results in high methane effluxes from coastal sediments

NARCIS (Netherlands)

Egger, M.J.|info:eu-repo/dai/nl/372629199; Lenstra, W.K.|info:eu-repo/dai/nl/411295977; Jong, Dirk; Meysman, Filip; Sapart, C.J.|info:eu-repo/dai/nl/31400596X; van der Veen, C.; Röckmann, Thomas|info:eu-repo/dai/nl/304838233; Gonzalez, Santiago; Slomp, C.P.|info:eu-repo/dai/nl/159424003

2016-01-01

Globally, the methane (CH4) efflux from the ocean to the atmosphere is small, despite high rates of CH4 production in continental shelf and slope environments. This low efflux results from the biological removal of CH4 through anaerobic oxidation with sulfate in marine sediments. In some settings,

On using rational enzyme redesign to improve enzyme-mediated microbial dehalogenation of recalcitrant substances in deep-subsurface environments

International Nuclear Information System (INIS)

Ornstein, R.L.

1993-06-01

Heavily halogenated hydrocarbons are one of the most prevalent classes of man-made recalcitrant environmental contaminants and often make their way into subsurface environments. Biodegradation of heavily chlorinated compounds in the deep subsurface often occurs at extremely slow rates because native enzymes of indigenous microbes are unable to efficiently metabolize such synthetic substances. Cost-effective engineering solutions do not exist for dealing with disperse and recalcitrant pollutants in the deep subsurface (i.e., ground water, soils, and sediments). Timely biodegradation of heavily chlorinated compounds in the deep subsurface may be best accomplished by rational redesign of appropriate enzymes that enhance the ability of indigenous microbes to metabolize these substances. The isozyme family cytochromes P450 are catalytically very robust and are found in all aerobic life forms and may be active in may anaerobes as well. The author is attempting to demonstrate proof-of-principle rational enzyme redesign of cytochromes P450 to enhance biodehalogenation

Physiological and biochemical responses to the exogenous application of proline of tomato plants irrigated with saline water

Directory of Open Access Journals (Sweden)

B. Kahlaoui

2018-01-01

Full Text Available In scope of crop salinity tolerance, an experiment was carried out in a field using saline water (6.57 dS m−1 and subsurface drip irrigation (SDI on two tomato cultivars (Solanum lycopersicum, cv. Rio Grande and Heinz-2274 in a salty clay soil. Exogenous application of proline was done by foliar spray at two concentrations: 10 and 20 mg L−1, with a control (saline water without proline, during the flowering stage. Significant higher increases in proline and total soluble protein contents, glutamine synthetase (GS, EC6.3.1.2 activities and decreases in proline oxidase (l-proline: O2 Oxidoreductase, EC1.4.3.1 activities were detected in both tomato cultivars when irrigated with saline water (6.57 dS m−1 and exogenously applied by the lower concentration of proline. Taking in consideration the obtained results, it was concluded that the foliar spray of low concentration of proline can increase the tolerance of both cultivars of tomato to salinity under field conditions.

MICROSCALE METABOLIC, REDOX AND ABIOTIC REACTIONS IN HANFORD 300 AREA SUBSURFACE SEDIMENTS

Energy Technology Data Exchange (ETDEWEB)

Beyenal, Haluk [WSU; McLEan, Jeff [JCVI; Majors, Paul [PNNL; Fredrickson, Jim [PNNL

2013-11-14

The Hanford 300 Area is a unique site due to periodic hydrologic influence of river water resulting in changes in groundwater elevation and flow direction. This area is also highly subject to uranium remobilization, the source of which is currently believed to be the region at the base of the vadose zone that is subject to period saturation due to the changes in the water levels in the Columbia River. We found that microbial processes and redox and abiotic reactions which operate at the microscale were critical to understanding factors controlling the macroscopic fate and transport of contaminants in the subsurface. The combined laboratory and field research showed how microscale conditions control uranium mobility and how biotic, abiotic and redox reactions relate to each other. Our findings extended the current knowledge to examine U(VI) reduction and immobilization using natural 300 Area communities as well as selected model organisms on redox-sensitive and redox-insensitive minerals. Using innovative techniques developed specifically to probe biogeochemical processes at the microscale, our research expanded our current understanding of the roles played by mineral surfaces, bacterial competition, and local biotic, abiotic and redox reaction rates on the reduction and immobilization of uranium.

Effects of Surface and Subsurface Bed Material Composition on Gravel Transport and Flow Competence Relations—Possibilities for Prediction

Science.gov (United States)

Bunte, K.; Abt, S. R.; Swingle, K. W.; Cenderelli, D. A.; Gaeuman, D. A.

2014-12-01

Bedload transport and flow competence relations are difficult to predict in coarse-bedded steep streams where widely differing sediment supply, bed stability, and complex flow hydraulics greatly affect amounts and sizes of transported gravel particles. This study explains how properties of bed material surface and subsurface size distributions are directly related to gravel transport and may be used for prediction of gravel transport and flow competence relations. Gravel transport, flow competence, and bed material size were measured in step-pool and plane-bed streams. Power functions were fitted to gravel transport QB=aQb and flow competence Dmax=cQd relations; Q is water discharge. Frequency distributions of surface FDsurf and subsurface FDsub bed material were likewise described by power functions FDsurf=hD j and FDsub=kDm fitted over six 0.5-phi size classes within 4 to 22.4 mm. Those gravel sizes are typically mobile even in moderate floods. Study results show that steeper subsurface bed material size distributions lead to steeper gravel transport and flow competence relations, whereas larger amounts of sediment contained in those 6 size bedmaterial classes (larger h and k) flatten the relations. Similarly, steeper surface size distributions decrease the coefficients of the gravel transport and flow competence relations, whereas larger amounts of sediment within the six bed material classes increase the intercepts of gravel transport and flow competence relations. Those relations are likely causative in streams where bedload stems almost entirely from the channel bed as opposed to direct (unworked) contributions from hillslopes and tributaries. The exponent of the subsurface bed material distribution m predicted the gravel transport exponent b with r2 near 0.7 and flow competence exponent d with r2 near 0.5. The intercept of bed surface distributions h increased the intercept a of gravel transport and c of the flow competence relations with r2 near 0.6.

Radiocarbon dating of bottom sediments of the Red Sea

International Nuclear Information System (INIS)

Kuptsov, V.M.; Palkina, A.M.

1986-01-01

Results of radiocarbon dating of 23 cores (81 definitions) sampled in the Red Sea rifton at 18 deg N are presented. Dating encompasses all major tectonic structures: the upper and the lower tectonic steps, saline scarp, axial zone. For sediments of the upper tectonic step the normal course of sedimentogenesis is detected, in all other structures with a strongly dissected topography redeposition and nonaccumulation of sediments are widely developed. In Holocene the rate of sediment accumulation is 1.5-2 times lower than that in the late Wurm

Pb’s high sedimentation inside the bay mouth of Jiaozhou Bay

Science.gov (United States)

Yang, Dongfang; Miao, Zhenqing; Huang, Xinmin; Wei, Linzhen; Feng, Ming

2017-12-01

Sedimentation is one of the key environmental behaviors of pollutants in the ocean. This paper analyzed the seasonal and temporal variations of Pb’s sedimentation process in Jiaozhou Bay in 1987. Results showed that Pb contents in bottom waters in Jiaozhou Bay in May, July and November 1987 were 1.87-2.60 μg L-1, 15.11-19.68 μg L-1 and 11.08-15.18 μg L-1, and the pollution levels of Pb in May, July and November 1987 were slight, heavy and heavy, respectively. In May 1987, there was low sedimentation process in waters in the outside of the bay mouth, yet were high sedimentation process in waters in the middle and inside of the bay mouth. In July and November 1987, there was low sedimentation process in waters in the outside of the bay mouth, yet were high sedimentation process in waters in the inside of the bay mouth. The seasonal-temporal variation of sedimentation processes of Pb were determined by the variations of sources input and the vertical water’s effect.

Microbial effects on the release and attenuation of arsenic in the shallow subsurface of a natural geochemical anomaly

International Nuclear Information System (INIS)

Drahota, Petr; Falteisek, Lukáš; Redlich, Aleš; Rohovec, Jan; Matoušek, Tomáš; Čepička, Ivan

2013-01-01

Critical factors leading to arsenic release and attenuation from the shallow subsurface were studied with multidisciplinary approach in the natural gold–arsenic geochemical anomaly at Mokrsko (Czech Republic). The results show that microbial reduction promotes arsenic release from Fe(III) (hydr)oxides and Fe(III) arsenates, thereby enhancing dissolved arsenic in the shallow groundwater at average concentration of 7.76 mg/L. In the organic-rich aggregates and wood particles, however, microbial sulfate reduction triggers the formation of realgar deposits, leading to accumulation of As in the distinct organic-rich patches of the shallow subsurface. We conclude that precipitation of realgar in the shallow subsurface of soil/sediment depends on specific and non-trivial combination of water and rock chemistry, microbial community composition and spatial organisation of the subsurface zone, where speciation in saturated environments varied on a centimeter scale from reduced (decomposed wood, H 2 S and realgar present) to oxidized (goethite and arsenate minerals are present). Highlights: •Very high As(III) concentrations were detected in the shallow groundwater. •Arsenic is bound to Fe(III) (hydr)oxides, Fe(III) arsenates and newly-formed realgar. •Reductive dissolution of Fe(III) and As(V) minerals by bacteria leads to mobilization of arsenic. •Precipitation of realgar is constrained to anaerobic domains around and within organic particles. -- Microbial reduction of Fe(III) and As(V) minerals leads to mobilization of As and induces a mineralogical transition toward realgar formation

The source of groundwater salinization in the Indus basin - an isotopic evidence

International Nuclear Information System (INIS)

Sajjad, M.I.; Hussain, S.D.; Tasneem, M.A.; Ahmad, M.; Khan, I.H.; Akram, W.; Waheed, R.

1991-09-01

The isotopic and chemical studies were carried out in three regions of the Indus Basin to ascertain the source of salinity. Samples collected from the Faisalabad are in Rechna Doab, Chaj Doab and Mardan Valley, were analysed on mass spectrometer for D/H, 18O/16O and 34S/32S ratios. Electrical conductivities and pH measurements were made in situ while the analyses of various cations/anions were made in the laboratory. The isotopic results show that the salinity is mainly due to the dissolution of sediments salts by the infiltrating sweet water. The chemical data also support this conclusion. The rise in salinity is also partly due to the use of fertilizers and evaporation processes. (author)

Mobilization And Characterization Of Colloids Generated From Cement Leachates Moving Through A SRS Sandy Sediment

International Nuclear Information System (INIS)

Li, D.; Roberts, K.; Kaplan, D.; Seaman, J.

2011-01-01

Naturally occurring mobile colloids are ubiquitous and are involved in many important processes in the subsurface zone. For example, colloid generation and subsequent mobilization represent a possible mechanism for the transport of contaminants including radionuclides in the subsurface environments. For colloid-facilitated transport to be significant, three criteria must be met: (1) colloids must be generated; (2) contaminants must associate with the colloids preferentially to the immobile solid phase (aquifer); and (3) colloids must be transported through the groundwater or in subsurface environments - once these colloids start moving they become 'mobile colloids'. Although some experimental investigations of particle release in natural porous media have been conducted, the detailed mechanisms of release and re-deposition of colloidal particles within natural porous media are poorly understood. Even though this vector of transport is known, the extent of its importance is not known yet. Colloid-facilitated transport of trace radionuclides has been observed in the field, thus demonstrating a possible radiological risk associated with the colloids. The objective of this study was to determine if cementitious leachate would promote the in situ mobilization of natural colloidal particles from a SRS sandy sediment. The intent was to determine whether cementitious surface or subsurface structure would create plumes that could produce conditions conducive to sediment dispersion and mobile colloid generation. Column studies were conducted and the cation chemistries of influents and effluents were analyzed by ICP-OES, while the mobilized colloids were characterized using XRD, SEM, EDX, PSD and Zeta potential. The mobilization mechanisms of colloids in a SRS sandy sediment by cement leachates were studied.

Study on a Novel Gelled Foam for Conformance Control in High Temperature and High Salinity Reservoirs

Directory of Open Access Journals (Sweden)

Tong Li

2018-05-01

Full Text Available A novel gelled foam for conformance control was investigated for its ability to enhance oil recovery (EOR in high temperature and high salinity reservoirs. The formulation optimization, foaming performance, and core flooding performance of the gelled foam were systematically evaluated under harsh reservoir conditions. The gelled foam formulation was optimized with 0.4% polymer (hydrolyzed polyacrylamide; HPAM, 0.06% cross-linker (phenolic and 0.2% foaming agent (sulphobetaine; SB. The addition of the gel improved the stability of the foam system by 3.8 times that of traditional foam. A stabilization mechanism in the gelled foam was proposed to describe the stabilization process of the foam film. The uniformly distributed three-dimensional network structure of the gel provided a thick protective layer for the foam system that maintained the stability of the foam and improved the strength and thickness of the liquid film. The gelled foam exhibited good formation adaptability, profile control, and EOR performance. The foam flowed into the high permeability layer, plugged the dominant channel, and increased the swept volume. Oil recovery was enhanced by 29.4% under harsh high -temperature and high salinity conditions.

Multistage 8.2 kyr event revealed through high-resolution XRF core scanning of Cuban sinkhole sediments

Science.gov (United States)

Peros, Matthew; Collins, Shawn; G'Meiner, Anna Agosta; Reinhardt, Eduard; Pupo, Felipe Matos

2017-07-01

We use sediments from a flooded sinkhole (Cenote Jennifer) in northern Cuba to provide new, well-dated, high-resolution evidence for the 8.2 kyr event. From 7600 to 8700 cal yr B.P. the sinkhole contained shallow, low-salinity water, which supported a marsh dominated by cattail and grass. Peaks in Cl and Br—occurring at 8150, 8200, and 8250 cal yr B.P.—are attributable to increased evaporation due to regional drying associated with the 8.2 kyr event. The three peaks in these elements also closely correspond to the greyscale record from the Cariaco Basin, indicative of increased upwelling in the southern Caribbean Sea at this time, supporting the notion of a multistage 8.2 kyr event. Our work provides new data that help to clarify the initiation, behavior, and impacts of the 8.2 kyr event in the northern tropics.

Hydrochemical Characteristics and Formation of the Saline or Salty Springs in Eastern Sichuan Basin of China

Science.gov (United States)

Zhou, X.

2017-12-01

Saline or salty springs provide important information on the hydrogeochemical processes and hydrology within subsurface aquifers. More than 20 saline and salty springs occur in the core of anticlines in the eastern Sichuan Basin in southwestern China where the Lower and Middle Triassic carbonates outcrop. Water samples of 8 saline and salty springs (including one saline hot spring) were collected for analyses of the major and minor constituents, trace elements and stable oxygen and hydrogen isotopes. The TDS of the springs range from 4 to 83 g/L, and they are mainly of Cl-Na type. Sr, Ba and Li are the predominant trace elements. The δ2H and δ18O of the water samples indicate that they are of meteoric origin. The source of salinity of the springs originates from dissolution of minerals in the carbonates, including halite, gypsum, calcite and dolomite. The formation mechanism of the springs is that groundwater receives recharge from infiltration of precipitation, undergoes shallow or deep circulation in the core of the anticline and incongruent dissolution of the salt-bearing carbonates occurs, and emerges in the river valley in the form of springs with relatively high TDS. The 8 springs can be classified into 4 springs of shallow groundwater circulation and 4 springs of deep groundwater circulation according to the depth of groundwater circulation, 7 springs of normal temperature and 1 hot spring according to temperature. There are also 2 up-flow springs: the carbonate aquifers are overlain by relatively impervious sandstone and shale, groundwater may flows up to the ground surface through the local portion of the overlying aquiclude where fractures were relatively well developed, and emerges as an up-flow spring. Knowledge of the hydrochemical characteristics and the geneses of the saline and salty springs are of important significance for the utilization and preservation of the springs.

Retrieving Temperature Anomaly in the Global Subsurface and Deeper Ocean From Satellite Observations

Science.gov (United States)

Su, Hua; Li, Wene; Yan, Xiao-Hai

2018-01-01

Retrieving the subsurface and deeper ocean (SDO) dynamic parameters from satellite observations is crucial for effectively understanding ocean interior anomalies and dynamic processes, but it is challenging to accurately estimate the subsurface thermal structure over the global scale from sea surface parameters. This study proposes a new approach based on Random Forest (RF) machine learning to retrieve subsurface temperature anomaly (STA) in the global ocean from multisource satellite observations including sea surface height anomaly (SSHA), sea surface temperature anomaly (SSTA), sea surface salinity anomaly (SSSA), and sea surface wind anomaly (SSWA) via in situ Argo data for RF training and testing. RF machine-learning approach can accurately retrieve the STA in the global ocean from satellite observations of sea surface parameters (SSHA, SSTA, SSSA, SSWA). The Argo STA data were used to validate the accuracy and reliability of the results from the RF model. The results indicated that SSHA, SSTA, SSSA, and SSWA together are useful parameters for detecting SDO thermal information and obtaining accurate STA estimations. The proposed method also outperformed support vector regression (SVR) in global STA estimation. It will be a useful technique for studying SDO thermal variability and its role in global climate system from global-scale satellite observations.

Preferential flow in fissured sediments in desert soils related to radioactive waste disposal

International Nuclear Information System (INIS)

Scanlon, B.R.; Raney, J.A.

1992-01-01

Unsaturated flow in fissured sediments in the Chihuahuan Desert of Texas was examined to determine if these features act as preferred pathways for water and solute transport. Fissures are surface features, or gulleys, that are underlain by fractures filled with sediment derived from surrounding areas. Hydraulic and chemical approaches were used to investigate unsaturated flow processes beneath and adjacent to fissures, and the results were compared with data from surrounding geomorphic systems such as arroyos, ephemeral streams, and interstreams. Typically, high water potentials in surficial sediments result from infiltration of recent precipitation. Below this surficial zone of high water potentials lies a zone of low water potentials that is much thinner beneath the fissure than in adjacent sediments or in sediments beneath ephemeral streams and interstreams. Maximum chloride concentrations in profiles in the near-surface fissured sediments were much lower than those measured in all other geomorphic systems. The corresponding moisture velocities in the fissured sediments ranged from 10 to 70 mm/yr. A tracer experiment demonstrated higher downward water and solute transport in the fracture fill beneath the fissure relative to adjacent sediments. Numerical simulations of the tracer experiment with the computer code TRACR3D reproduced the overall shape of the tracer plume. Sensitivity analyses demonstrated that the tracer plume is most sensitive to spatial variability in soil texture and the corresponding hydraulic parameters. The results from this study suggest that sediments in the fissured area act as preferred pathways in the shallow subsurface because surface runoff is concentrated in the fissures and because underlying fractures and cavities provide avenues for moisture and solute transport

Microbial diversity in Cenozoic sediments recovered from the Lomonosov Ridge in the Central Arctic basin.

Science.gov (United States)

Forschner, Stephanie R; Sheffer, Roberta; Rowley, David C; Smith, David C

2009-03-01

The current understanding of microbes inhabiting deeply buried marine sediments is based largely on samples collected from continental shelves in tropical and temperate latitudes. The geographical range of marine subsurface coring was expanded during the Integrated Ocean Drilling Program Arctic Coring Expedition (IODP ACEX). This expedition to the ice-covered central Arctic Ocean successfully cored the entire 428 m sediment stack on the Lomonosov Ridge during August and September 2004. The recovered cores vary from siliciclastic sediment low in organic carbon ( 200 m below sea floor) sulfate reduction zone. The diversity of microbes within each zone was assessed using 16S rRNA phylogenetic markers. Bacterial 16S rRNA genes were successfully amplified from each of the biogeochemical zones, while archaea was only amplified from the deep sulfate reduction zone. The microbial communities at each zone are phylogenetically different and are most closely related to those from other deep subsurface environments.

Biomarkers in sedimentary sequences: Indicators to track sediment sources over decadal timescales

Science.gov (United States)

Chen, F. X.; Fang, N. F.; Wang, Y. X.; Tong, L. S.; Shi, Z. H.

2017-02-01

Long-term sedimentary sequence research can reveal how human activities and climate interact to affect catchment vegetation, flooding, soil erosion, and sediment sources. In this study, a biomarker sediment fingerprinting technique based on n-alkanes was used to identify long timescale (decadal) sediment sources in a small agricultural catchment. However, the highly saline carbonate environment and bacterial and algal activities elevated the levels of even-chain n-alkanes in the sediments, leading to an obvious even-over-odd predominance of short and middle components (C15-C26). Therefore, by analyzing three odd, long-chain n-alkanes (C27, C29 and C31) in 27 source samples from cropland, gully, and steep slope areas and one sediment sequence (one cultivated horizon and 47 flood couplets), a composite fingerprinting method and genetic algorithm optimization were applied to find the optimal source contributions to sediments. The biomarker fingerprinting results demonstrated that the primary sediment source is gullies, followed by cropland and steep slope areas. The average median source contributions associated with 47 flood couples collected from sediment core samples ranged from 0 ± 0.1% to 91.9 ± 0.4% with an average of 45.0% for gullies, 0 ± 0.4% to 95.6 ± 1.6% with an average of 38.2% for cropland, and 0 ± 2.1% to 60.7 ± 0.4% with an average of 16.8% for steep slopes. However, because farmers were highly motivated to manage the cropland after the 1980s, over half the sediments were derived from cropland in the 1980s. Biomarkers have significant advantages in the identification of sediments derived from different landscape units (e.g., gully and steep slope areas), and n-alkanes have considerable potential in high-resolution research of environmental change based on soil erosion in the hilly Loess Plateau region.

Testing the effects of in-stream sediment sources and sinks on simulated watershed sediment yield using the coupled U.S. Army Corps of Engineers GSSHA Model and SEDLIB Sediment Transport Library

Science.gov (United States)

Floyd, I. E.; Downer, C. W.; Brown, G.; Pradhan, N. R.

2017-12-01

The Gridded Surface Subsurface Hydrologic Analysis (GSSHA) model is the US Army Corps of Engineers' (USACE)'s only fully coupled overland/in-stream sediment transport model. While the overland sediment transport formulation in GSSHA is considered state of the art, the existing in-stream sediment transport formulation is less robust. A major omission in the formulation of the existing GSSHA in-stream model is the lack of in-stream sources of fine materials. In this effort, we enhanced the in-stream sediment transport capacity of GSSHA by linking GSSHA to the SEDLIB sediment transport library. SEDLIB was developed at the Coastal and Hydraulics Laboratory (CHL) under the System Wide Water Resources Program (SWWRP) and Flood and Coastal (F&C) research program. It is designed to provide a library of sediment flux formulations for hydraulic and hydrologic models, such as GSSHA. This new version of GSSHA, with the updated in-stream sediment transport simulation capability afforded by the linkage to SEDLIB, was tested in against observations in an experimental watershed that had previously been used as a test bed for GSSHA. The results show a significant improvement in the ability to model in-stream sources of fine sediment. This improved capability will broaden the applicability of GSSHA to larger watersheds and watersheds with complex sediment dynamics, such as those subjected to fire hydrology.

Geophysical Investigations of Saline Permafrost at Ilulissat, Greenland

DEFF Research Database (Denmark)

Ingeman-Nielsen, Thomas; Foged, Niels Nielsen; Butzbach, Rune

2008-01-01

The technical properties and general state of permafrost in Greenland is not well documented. A new coordinated investigation has been initiated, for ground temperature measurements and permafrost mapping in Greenlandic towns in sporadic, discontinuous and continuous permafrost zones. We present...... investigation results from one of the sites, located at Ilulissat, in an area of discontinuous saline permafrost. We have established ground temperature measurement stations and conducted a shallow geoelectrical study. Our results show that the sediments in the studied area mainly consist of very frost...... susceptible silty clays. The area has permafrost with a maximum active layer thickness between 0.9 and 1 m. In spite of low permafrost temperatures a considerable part of the pore water is unfrozen, due to high residual salt concentrations. Consequently, the unfrozen water content dominates the technical...

High salinity relay as a post-harvest processing method for reducing Vibrio vulnificus levels in oysters (Crassostrea virginica).

Science.gov (United States)

Audemard, Corinne; Kator, Howard I; Reece, Kimberly S

2018-08-20

High salinity relay of Eastern oysters (Crassostrea virginica) was evaluated as a post-harvest processing (PHP) method for reducing Vibrio vulnificus. This approach relies on the exposure of oysters to natural high salinity waters and preserves a live product compared to previously approved PHPs. Although results of prior studies evaluating high salinity relay as a means to decrease V. vulnificus levels were promising, validation of this method as a PHP following approved guidelines is required. This study was designed to provide data for validation of this method following Food and Drug Administration (FDA) PHP validation guidelines. During each of 3 relay experiments, oysters cultured from 3 different Chesapeake Bay sites of contrasting salinities (10-21 psu) were relayed without acclimation to high salinity waters (31-33 psu) for up to 28 days. Densities of V. vulnificus and densities of total and pathogenic Vibrio parahaemolyticus (as tdh positive strains) were measured using an MPN-quantitative PCR approach. Overall, 9 lots of oysters were relayed with 6 exhibiting initial V. vulnificus >10,000/g. As recommended by the FDA PHP validation guidelines, these lots reached both the 3.52 log reduction and the levels ranged from 2 to 61% after 28 days of relay. Although the identification of the factors implicated in oyster mortality will require further examination, this study strongly supports the validation of high salinity relay as an effective PHP method to reduce levels of V. vulnificus in oysters to endpoint levels approved for human consumption. Copyright © 2018 Elsevier B.V. All rights reserved.

Monitoring and Modelling of Salinity Behaviour in Drinking Water Ponds in Southern Bangladesh

Science.gov (United States)

Hoque, M. A.; Williams, A.; Mathewson, E.; Rahman, A. K. M. M.; Ahmed, K. M.; Scheelbeek, P. F. D.; Vineis, P.; Butler, A. P.

2015-12-01

Drinking water in southern Bangladesh is provided by a variety of sources including constructed storage ponds, seasonal rainwater and, ubiquitously saline, shallow groundwater. The ponds, the communal reservoirs for harvested rainwater, also tend to be saline, some as high as 2 g/l. Drinking water salinity has several health impacts including high blood pressure associated major risk factor for several cardio-vascular diseases. Two representative drinking water ponds in Dacope Upazila of Khulna District in southwest Bangladesh were monitored over two years for rainfall, evaporation, pond and groundwater level, abstraction, and solute concentration, to better understand the controls on drinking water salinity. Water level monitoring at both ponds shows groundwater levels predominantly below the pond level throughout the year implying a downward gradient. The grain size analysis of the underlying sediments gives an estimated hydraulic conductivity of 3E-8 m/s allowing limited seepage loss. Water balance modelling indicates that the seepage has a relatively minor effect on the pond level and that the bulk of the losses come from the combination of evaporation and abstraction particularly in dry season when precipitation, the only inflow to the pond, is close to zero. Seasonal variation in salinity (electrical conductivities, EC, ranged between 1500 to 3000 μS/cm) has been observed, and are primarily due to dilution from rainfall and concentration from evaporation, except on one occasion when EC reached 16,000 μS/cm due to a breach in the pond levee. This event was analogous to the episodic inundation that occurs from tropical cyclone storm surges and appears to indicate that such events are important for explaining the widespread salinisation of surface water and shallow groundwater bodies in coastal areas. A variety of adaptations (either from practical protection measures) or novel alternative drinking sources (such as aquifer storage and recovery) can be applied

Sediment studies of the biological factors controlling the reduction of U(VI)

International Nuclear Information System (INIS)

Lovley, Derek R.

2004-01-01

Studies were conducted primarily with sediments, both in laboratory incubations and in a field experiment, with supporting studies with pure cultures. To our knowledge the sediment studies were the first on microbial U(VI) reduction in actual uranium-contaminated subsurface sediments, under conditions that mimic those found in situ. Important findings included: (1) U(VI) reduction is a biotic process in subsurface sediments. (2) U(VI) reduction can be stimulated most effectively with the addition of acetate. Although it had been speculated that microbial U(VI) reduction might be capable of this type of environmental remediation ever since the discovery of microbial U(VI) reduction, this had not been previously demonstrated under environmentally relevant conditions. (3) U(VI) is reduced concurrently with Fe(III) and prior to sulfate reduction. U(VI) and Fe(III) reduction proceeded concurrently, accompanied by a dramatic enrichment in organisms in the Geobacteraceae. Sulfate-reducing microorganisms do not appear to be important components of the microbial community reducing U(VI) in these subsurface sediments. (4) Nitrate has important influences on U(VI) reduction. Nitrate inhibits the reduction of metals until nitrate is depleted. Fe(III)-reducing microorganisms such as Geobacter metallireducens and Desulfitobacterium species can oxidize Fe(II) with the reduction of nitrate which is an important consideration because our previous studies have demonstrated that freshly precipitated Fe(III) oxides can reoxidize U(IV) to U(VI). The discovery that G. metallireducens can ''run backwards'' and oxidize U(IV) when nitrate is present reveals another mechanism preventing precipitation of U(IV) in the presence of nitrate as well as potential novel strategy for removing uranium from the subsurface after a site has been remediated. (5) Importance of understanding Fe(III) forms available for microbial reduction. Fe(III) is orders of magnitude more abundant than U(VI) as an

Diversity, Persistence and Evolution in Marine Sediments

DEFF Research Database (Denmark)

Starnawski, Piotr

2016-01-01

on the marine sediments communities was reviewed, it became apparent that there are some global trends in these populations ob- served in deep and shallow, organic rich and poor sediments. We have observed the same, often uncultured, organisms with very similar relative abundance profiles in reviewed sites...... communities as they transition from actively growing surface populations to barely dividing subsurface ones; (ii) evolutionary consequences of the prolonged residence in such environments and (iii) inferring function of the dominant groups found in deep sediments. When the current state of our knowledge....... In order to better understand this pattern we’ve reviewed the assembly processes that may lead to such situations, keeping in mind the limitations imposed by the environment.We’ve concluded, that due to low energy fluxes, and consequently low number of pos- sible cell divisions, selective survival of pre...

Evidence for marine origin and microbial-viral habitability of sub-zero hypersaline aqueous inclusions within permafrost near Barrow, Alaska.

Science.gov (United States)

Colangelo-Lillis, J; Eicken, H; Carpenter, S D; Deming, J W

2016-05-01

Cryopegs are sub-surface hypersaline brines at sub-zero temperatures within permafrost; their global extent and distribution are unknown. The permafrost barrier to surface and groundwater advection maintains these brines as semi-isolated systems over geological time. A cryopeg 7 m below ground near Barrow, Alaska, was sampled for geochemical and microbiological analysis. Sub-surface brines (in situtemperature of -6 °C, salinity of 115 ppt), and an associated sediment-infused ice wedge (melt salinity of 0.04 ppt) were sampled using sterile technique. Major ionic concentrations in the brine corresponded more closely to other (Siberian) cryopegs than to Standard seawater or the ice wedge. Ionic ratios and stable isotope analysis of water conformed to a marine or brackish origin with subsequent Rayleigh fractionation. The brine contained ∼1000× more bacteria than surrounding ice, relatively high viral numbers suggestive of infection and reproduction, and an unusually high ratio of particulate to dissolved extracellular polysaccharide substances. A viral metagenome indicated a high frequency of temperate viruses and limited viral diversity compared to surface environments, with closest similarity to low water activity environments. Interpretations of the results underscore the isolation of these underexplored microbial ecosystems from past and present oceans. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

The Importance of Microbial Iron Sulfide Oxidation for Nitrate Depletion in Anoxic Danish Sediments

DEFF Research Database (Denmark)

Vaclavkova, Sarka; Jacobsen, Ole Stig; Jørgensen, Christian Juncher

2014-01-01

of organic carbon in the sediment. An apparent salinity limitation to MISON was observed in the most brackish environment. Addition of high surface area synthetically precipitated iron sulfide (FeS x ) to the aquifer sediment with the lowest natural FeS x reactivity increased both the relative fraction of NO......Nitrate (NO3 −) reduction processes are important for depleting the NO3 − load from agricultural source areas before the discharge water reaches surface waters or groundwater aquifers. In this study, we experimentally demonstrate the co-occurrence of microbial iron sulfide oxidation by NO3 − (MISON......) and other NO3 −-depleting processes in a range of contrasting sediment types: sandy groundwater aquifer, non-managed minerotrophic freshwater peat and two brackish muddy sediments. Approximately 1/3 of the net NO3 − reduction was caused by MISON in three of the four environments despite the presence...

The Effect of Water Table Fluctuation and its Salinity on Fe Crystal and Noncrystal in some Khuzestan Soils

Directory of Open Access Journals (Sweden)

mostafa Pajohannia

2017-01-01

-tionite treatments was different regarding the salinity, texture, organic matters, cultivation and the water table fluctuation. The total Fe content in the middle layers had permanently increased due to the groundwater fluctuation levels and this caused the creation of mottle in this layer. All saline soils had saline subsurface water. The salinity has caused that the effective microorganisms have not been actived on the reduction processes in some profiles and the Fe deposit more in the Fe3+forms. The Fe was found more in non-crystal form in saline regions, but it was in the crystal form in non-saline regions which indicated the suitable conditions for Fe’s nodule formation. For example, when soil salinity decreased from 14.9 to 8.1 dS/m, Fec increased from 460.1 to 497.8 mg/kg soil. With increasing the amount of clay, and cultivation periods, the Fed content has also been increased. The Feo/ Fec ratio in undevelopted soils was higher than developed soils. This ratio was low in non-saline soil and was high for saline soil. this indicates that non-saline soil had more development than saline soils. The maximum amount (1.6 was belonged to saline soil and minimum was for no saline soils. With increasing in soil age, tillage periods and clay content this ratio was decreased., statistical analysis Also showed that there was significant difference between Fec and Feo in saline and no saline soils. Also, with increasing in salinity, Fec content decreased and Feo increased. aggregate stability was also increased with increasing Fec content. Conclusions: The Feo content was more in surface of saline soil than subsurface when pedon was ponded and saturated from surface. Feo was very higher in saline soils than no saline soils. Fec had not significant difference between saline and nonsaline soils. Salinity decreased Fec and increased Feo content in soils. Feo/Fec ratio of saline soils was 4 to 5 times fold of non-saline soils. Increasing Feo/Fec ratio in saline soils and decreasing in this

Groundwater salinity study in the Mekong Delta using isotope techniques

International Nuclear Information System (INIS)

Le Van Khoi, Nguyen Kien Chinh; Do Tien Hung

2002-01-01

Environmental isotopes D, 18 O and chemical composition were used for study of recharge and salinization of groundwater in the are located between Bassac and Mekong Rivers. The results showed that: (a) Pleistocene aquifers are recharged through flood plains and outcrops located at the same altitude. The sanility of groundwater in these aquifers is mostly due to dissolution of the aquifer material, (b) Pliocene and Miocene aquifers receive recharge through outcrops located at the higher altitude on the northeast extension of the Delta and Cambodia. The salinity of groundwater in the coastal region of the aquifer is attributable to sea water intrusion. There appears to be significant retention of sea water in the coastal sediment during intrusion. (Author)

Toxicity of high salinity tannery wastewater and effects on constructed wetland plants

DEFF Research Database (Denmark)

Calheirosa, C.S.C.; Silva, G.; Quitério, P.V.B.

2012-01-01

The toxicity of high salinity tannery wastewater produced after an activated sludge secondary treatment on the germination and seedling growth of Trifolium pratense, a species used as indicator in toxicity tests, was evaluated. Growth was inhibited by wastewater concentrations >25% and undiluted ...

Increasing salinity drastically reduces hatching success of crustaceans from depression wetlands of the semi-arid Eastern Cape Karoo region, South Africa.

Science.gov (United States)

Mabidi, Annah; Bird, Matthew S; Perissinotto, Renzo

2018-04-13

Salinity is an important factor affecting freshwater aquatic species distribution and diversity. The semi-arid Eastern Cape Karoo region of South Africa has been earmarked for shale gas development through hydraulic fracturing. The process uses large amounts of water and produces briny wastewater. When not managed properly, these wastewaters may lead to salinisation of surface freshwater bodies in the region. Therefore, the effect of salinity on the hatching success of crustacean resting eggs was examined using sediments from four depression wetlands found in the region. The sediments were exposed for 28 days to salinity levels of 0.5 g L -1 , 2.5 g L -1 , 5 g L -1 and 10 g L -1 . Control aquaria in which no salt was added were also set up. There was a significant decrease in the emerged taxa richness and abundances at salinities of 2.5 g L -1 and above. Anostraca, Notostraca and Spinicaudata hatchlings were abundant at salinities of 0.5 g L -1 and below, while Copepoda, Daphniidae (Cladocera) and Ostracoda were observed in the highest salinity, but their densities were still lower with increased salinities. Given the importance of large branchiopods in the trophic balance of depression wetlands, their loss may alter the ecological balance and function of these ecosystems.

SUBSURFACE REPOSITORY INTEGRATED CONTROL SYSTEM DESIGN

International Nuclear Information System (INIS)

C.J. Fernado

1998-01-01

The purpose of this document is to develop preliminary high-level functional and physical control system architectures for the proposed subsurface repository at Yucca Mountain. This document outlines overall control system concepts that encompass and integrate the many diverse systems being considered for use within the subsurface repository. This document presents integrated design concepts for monitoring and controlling the diverse set of subsurface operations. The subsurface repository design will be composed of a series of diverse systems that will be integrated to accomplish a set of overall functions and objectives. The subsurface repository contains several Instrumentation and Control (I andC) related systems including: waste emplacement systems, ventilation systems, communication systems, radiation monitoring systems, rail transportation systems, ground control monitoring systems, utility monitoring systems (electrical, lighting, water, compressed air, etc.), fire detection and protection systems, retrieval systems, and performance confirmation systems. Each of these systems involve some level of I andC and will typically be integrated over a data communication network. The subsurface I andC systems will also integrate with multiple surface-based site-wide systems such as emergency response, health physics, security and safeguards, communications, utilities and others. The scope and primary objectives of this analysis are to: (1) Identify preliminary system level functions and interface needs (Presented in the functional diagrams in Section 7.2). (2) Examine the overall system complexity and determine how and on what levels these control systems will be controlled and integrated (Presented in Section 7.2). (3) Develop a preliminary subsurface facility-wide design for an overall control system architecture, and depict this design by a series of control system functional block diagrams (Presented in Section 7.2). (4) Develop a series of physical architectures

SUBSURFACE REPOSITORY INTEGRATED CONTROL SYSTEM DESIGN

Energy Technology Data Exchange (ETDEWEB)

C.J. Fernado

1998-09-17

The purpose of this document is to develop preliminary high-level functional and physical control system architectures for the proposed subsurface repository at Yucca Mountain. This document outlines overall control system concepts that encompass and integrate the many diverse systems being considered for use within the subsurface repository. This document presents integrated design concepts for monitoring and controlling the diverse set of subsurface operations. The subsurface repository design will be composed of a series of diverse systems that will be integrated to accomplish a set of overall functions and objectives. The subsurface repository contains several Instrumentation and Control (I&C) related systems including: waste emplacement systems, ventilation systems, communication systems, radiation monitoring systems, rail transportation systems, ground control monitoring systems, utility monitoring systems (electrical, lighting, water, compressed air, etc.), fire detection and protection systems, retrieval systems, and performance confirmation systems. Each of these systems involve some level of I&C and will typically be integrated over a data communication network. The subsurface I&C systems will also integrate with multiple surface-based site-wide systems such as emergency response, health physics, security and safeguards, communications, utilities and others. The scope and primary objectives of this analysis are to: (1) Identify preliminary system level functions and interface needs (Presented in the functional diagrams in Section 7.2). (2) Examine the overall system complexity and determine how and on what levels these control systems will be controlled and integrated (Presented in Section 7.2). (3) Develop a preliminary subsurface facility-wide design for an overall control system architecture, and depict this design by a series of control system functional block diagrams (Presented in Section 7.2). (4) Develop a series of physical architectures that

In situ redox manipulation of subsurface sediments from Fort Lewis, Washington: Iron reduction and TCE dechlorination mechanisms

Energy Technology Data Exchange (ETDEWEB)

JE Szecsody; JS Fruchter; DS Sklarew; JC Evans

2000-03-21

Pacific Northwest National Laboratory (PNNL) conducted a bench-scale study to determine how effective chemically treated Ft. Lewis sediments can degrade trichloroethylene (TCE). The objectives of this experimental study were to quantify: (1) sediment reduction and oxidation reactions, (2) TCE degradation reactions, and (3) other significant geochemical changes that occurred. Sediment reduction and oxidation were investigated to determine the mass of reducible iron in the Ft. Lewis sediments and the rate of this reduction and subsequent oxidation at different temperatures. The temperature dependence was needed to be able to predict field-scale reduction in the relatively cold ({approximately}11 C) Ft. Lewis aquifer. Results of these experiments were used in conjunction with other geochemical and hydraulic characterization to design the field-scale injection experiment and predict barrier longevity. For example, the sediment reduction rate controls the amount of time required for the dithionite solution to fully react with sediments. Sediment oxidation experiments were additionally conducted to determine the oxidation rate and provide a separate measure of the mass of reduced iron. Laboratory experiments that were used to meet these objectives included: (1) sediment reduction in batch (static) systems, (2) sediment reduction in 1-D columns, and (3) sediment oxidation in 1-D columns. Multiple reaction modeling was conducted to quantify the reactant masses and reaction rates.

CO2 leakage from carbon dioxide capture and storage (CCS) systems affects organic matter cycling in surface marine sediments.

Science.gov (United States)

Rastelli, Eugenio; Corinaldesi, Cinzia; Dell'Anno, Antonio; Amaro, Teresa; Greco, Silvestro; Lo Martire, Marco; Carugati, Laura; Queirós, Ana M; Widdicombe, Stephen; Danovaro, Roberto

2016-12-01

Carbon dioxide capture and storage (CCS), involving the injection of CO 2 into the sub-seabed, is being promoted worldwide as a feasible option for reducing the anthropogenic CO 2 emissions into the atmosphere. However, the effects on the marine ecosystems of potential CO 2 leakages originating from these storage sites have only recently received scientific attention, and little information is available on the possible impacts of the resulting CO 2 -enriched seawater plumes on the surrounding benthic ecosystem. In the present study, we conducted a 20-weeks mesocosm experiment exposing coastal sediments to CO 2 -enriched seawater (at 5000 or 20,000 ppm), to test the effects on the microbial enzymatic activities responsible for the decomposition and turnover of the sedimentary organic matter in surface sediments down to 15 cm depth. Our results indicate that the exposure to high-CO 2 concentrations reduced significantly the enzymatic activities in the top 5 cm of sediments, but had no effects on subsurface sediment horizons (from 5 to 15 cm depth). In the surface sediments, both 5000 and 20,000 ppm CO 2 treatments determined a progressive decrease over time in the protein degradation (up to 80%). Conversely, the degradation rates of carbohydrates and organic phosphorous remained unaltered in the first 2 weeks, but decreased significantly (up to 50%) in the longer term when exposed at 20,000 ppm of CO 2 . Such effects were associated with a significant change in the composition of the biopolymeric carbon (due to the accumulation of proteins over time in sediments exposed to high-pCO 2 treatments), and a significant decrease (∼20-50% at 5000 and 20,000 ppm respectively) in nitrogen regeneration. We conclude that in areas immediately surrounding an active and long-lasting leak of CO 2 from CCS reservoirs, organic matter cycling would be significantly impacted in the surface sediment layers. The evidence of negligible impacts on the deeper sediments should be

[Characteristic of ammonia nitrogen adsorption on karst underground river sediments].

Science.gov (United States)

Guo, Fang; Chen, Kun-Kun; Jiang, Guang-Hui

2011-02-01

Karst aquifers are one of the most important aquifers in Southwestern China. One of the characteristics of karst aquifers is the enhanced permeability permits high flow velocities are capable of transporting suspended and bedload sediments. Mobile sediment in karst may act as a vector for the transport of contaminates. 14 sediment samples were collected from two underground rivers in two typical karst areas in Liuzhou city, Guangxi Autonomous Region, China. According to simulated experiment methods, characteristic of adsorption of ammonia nitrogen on sediment was studied. The results of ammonia nitrogen adsorption dynamics on sediments showed that the maximum adsorption velocity was less than 2 h. The adsorption balance quantity in 5 h accounted for 71% - 98% of the maximum adsorption quantity. The maximum adsorption quantity of ammonia nitrogen was 385.5 mg/kg, which was sediment from a cave in the middle areas of Guancun underground river system. The study of isotherm adsorption indicated adsorption quantity of NH4+ increase followed by incremental balance concentration of NH4+ in the aquatic phase. Adsorption quantity of ammonia nitrogen in sediments has a relative linear relationship with adsorption balance concentrations. Adsorption-desorption balance concentrations were all low, indicating sediments from underground rivers have great adsorption potential. Under the condition of low and high concentrations of ammonia nitrogen in overlying water, Langmuir and Tempkin couldn't simulate or simulate results couldn't reach remarkable level, whilst Linear and Freundlich models could simulate well. Research on different type sediments, sampling times and depths from two underground rivers shows characteristic of ammonia nitrogen adsorption on karst underground river sediments doesn't have good correspondence with the type of sediments. One of the reasons is there is no big difference between sediments in the development of climate, geology, hydrological conditions

Importance of the High-Expression of Proline Transporter PutP to the Adaptation of Escherichia coli to High Salinity.

Science.gov (United States)

Sasaki, Hideaki; Sato, Daichi; Oshima, Akinobu

2017-01-01

　The effect of the amount of the proline transporter PutP expression on the mechanism of adaptation of E. coli cells to high salinity was analyzed. The PutP gene derived from the E. coli expression plasmid was introduced into the E. coli cell, and a high PutP expression strain was developed. At 1.2 M NaCl culture condition, the growth of normal E. coli cells was inhibited, whereas high ProP expression cells showed growth under 2.5 M NaCl conditions. The uptake of proline by E. coli as a compatible solute and substrate for metabolization was in good accordance with those seen in cell growth. These data suggested that the amount of the proline transporter PutP expression played an important role in the adaptation of E. coli cells to high saline conditions.

Isolation and characterization of a novel nitrobenzene-degrading bacterium with high salinity tolerance: Micrococcus luteus.

Science.gov (United States)

Zheng, Chunli; Qu, Baocheng; Wang, Jing; Zhou, Jiti; Wang, Jing; Lu, Hong

2009-06-15

Strain Z3 was isolated from nitrobenzene-contaminated sludge. Strain Z3 was able to utilize nitrobenzene as a sole source of carbon, nitrogen and energy under aerobic condition. Based on the morphology, physiological biochemical characteristics, and 16S rDNA sequence, strain Z3 was identified as Micrococcus luteus. Strain Z3 completely degraded nitrobenzene with initial concentration of 100, 150, 200, and 250 mg L(-1) within 70, 96, 120 and 196 h, respectively. Kinetics of nitrobenzene degradation was described using the Andrews equation. The kinetic parameters were as follows: q(max)=1.19 h(-1), K(s)=29.11 mg L(-1), and K(i)=94.00 mg L(-1). Strain Z3 had a high salinity tolerance. It degraded 200 mg L(-1) nitrobenzene completely in 5% NaCl (w/w%). Strain Z3 therefore could be an excellent candidate for the bio-treatment of nitrobenzene industrial wastewaters with high salinity. This is the first report on the degradation of nitrobenzene by M. luteus and the degradation of nitrobenzene achieved in such a high salinity.

Subsurface Contamination Control

Energy Technology Data Exchange (ETDEWEB)

Y. Yuan

2001-12-12

There are two objectives of this report, ''Subsurface Contamination Control''. The first is to provide a technical basis for recommending limiting radioactive contamination levels (LRCL) on the external surfaces of waste packages (WP) for acceptance into the subsurface repository. The second is to provide an evaluation of the magnitude of potential releases from a defective WP and the detectability of the released contents. The technical basis for deriving LRCL has been established in ''Retrieval Equipment and Strategy for Wp on Pallet'' (CRWMS M and O 2000g, 6.3.1). This report updates the derivation by incorporating the latest design information of the subsurface repository for site recommendation. The derived LRCL on the external surface of WPs, therefore, supercede that described in CRWMS M and O 2000g. The derived LRCL represent the average concentrations of contamination on the external surfaces of each WP that must not be exceeded before the WP is to be transported to the subsurface facility for emplacement. The evaluation of potential releases is necessary to control the potential contamination of the subsurface repository and to detect prematurely failed WPs. The detection of failed WPs is required in order to provide reasonable assurance that the integrity of each WP is intact prior to MGR closure. An emplaced WP may become breached due to manufacturing defects or improper weld combined with failure to detect the defect, by corrosion, or by mechanical penetration due to accidents or rockfall conditions. The breached WP may release its gaseous and volatile radionuclide content to the subsurface environment and result in contaminating the subsurface facility. The scope of this analysis is limited to radioactive contaminants resulting from breached WPs during the preclosure period of the subsurface repository. This report: (1) documents a method for deriving LRCL on the external surfaces of WP for acceptance into the

Experiment on Measurement of Interfacial Tension for Subsurface Conditions of Light Oil from Thailand

Directory of Open Access Journals (Sweden)

Jiravivitpanya Jiramet

2017-01-01

Full Text Available One of enhanced oil recovery techniques to increase oil production is surfactant flooding. Surfactants are considered as effective chemical agents used in oilfield in Thailand. It is used to reduce the interfacial tension (IFT of two fluids and to make them flow easier in the reservoir. In this study, Monoethanolamide (MEA commonly used for carbon dioxide capture, is applied as a surfactant to reduce IFT between oil and brine. Therefore, the aim of this work is to investigate and measure the IFT based on the conditions of subsurface at the oilfield in Thailand. These parameters such as temperature, pressure, salinity as well as the concentration of surfactant are adjusted to investigate the effects on IFT reduction. From the results, it is reported that pressure from 1000 to 2000 psi and temperature varied from 70°C to 90°C can reduce IFT insignificantly. However, salinity and surfactant concentration are the main parameters that impact on the IFT reduction. It can greatly decrease IFT up to 87.13% for surfactant concentration and up to 74.06% for salinity. Finally, the results can be applied to use in the real field for enhanced oil production in Thailand.

Subsurface transport program: Research summary

International Nuclear Information System (INIS)

1987-01-01

DOE's research program in subsurface transport is designed to provide a base of fundamental scientific information so that the geochemical, hydrological, and biological mechanisms that contribute to the transport and long term fate of energy related contaminants in subsurface ecosystems can be understood. Understanding the physical and chemical mechanisms that control the transport of single and co-contaminants is the underlying concern of the program. Particular attention is given to interdisciplinary research and to geosphere-biosphere interactions. The scientific results of the program will contribute to resolving Departmental questions related to the disposal of energy-producing and defense wastes. The background papers prepared in support of this document contain additional information on the relevance of the research in the long term to energy-producing technologies. Detailed scientific plans and other research documents are available for high priority research areas, for example, in subsurface transport of organic chemicals and mixtures and in the microbiology of deep aquifers. 5 figs., 1 tab

Geochemistry of silicate-rich rocks can curtail spreading of carbon dioxide in subsurface aquifers.

Science.gov (United States)

Cardoso, S S S; Andres, J T H

2014-12-11

Pools of carbon dioxide are found in natural geological accumulations and in engineered storage in saline aquifers. It has been thought that once this CO2 dissolves in the formation water, making it denser, convection streams will transport it efficiently to depth, but this may not be so. Here, we assess theoretically and experimentally the impact of natural chemical reactions between the dissolved CO2 and the rock formation on the convection streams in the subsurface. We show that, while in carbonate rocks the streaming of dissolved carbon dioxide persists, the chemical interactions in silicate-rich rocks may curb this transport drastically and even inhibit it altogether. These results challenge our view of carbon sequestration and dissolution rates in the subsurface, suggesting that pooled carbon dioxide may remain in the shallower regions of the formation for hundreds to thousands of years. The deeper regions of the reservoir can remain virtually carbon free.

Characterization of Direct-Push Vadose Zone Sediments from the 241-B and 241-BX Tank Farms

International Nuclear Information System (INIS)

Brown, Christopher F.; Icenhower, Jonathan P.; Um, Wooyong; Bjornstad, Bruce N.; Valenta, Michelle M.; Iovin, Cristian; Lanigan, David C.; Clayton, Ray E.; Geiszler, Keith N.; Clayton, Eric T.; Kutnyakov, Igor V.; Baum, Steven R.; Lindberg, Michael J.; Orr, Robert D.

2007-01-01

Geochemical tests provide evidence for the transit of a plume of caustic waste solution through the sediment column at the Hanford 241-B and -BX Tank Farms. Direct-push samples recovered from boreholes surrounding Tanks 241-B-110 and 241-BX-102 and related waste transfer lines and diversion boxes included sediments typical of those previously recovered from other localities on the Hanford Site. The Hanford formation sediments are dominantly quartzo-feldspathic sands strewn with lithic fragments, displaying a range of particle size distributions and sorting characteristics. Some moderately well-sorted, fine-grained lithologies are interpreted as lenticular bodies irregularly dispersed in coarser-grained, more poorly sorted sediments. Tier I tests conducted on the vadose zone sediments revealed an inverse correlation between moisture content and sediment size fraction (i.e., there is greater moisture content in finer-grained sediments). The Tier I tests also showed that the pore water solutions were likely sodium-rich, moderately saline, and possessed higher pH values than background (untainted) sediments. These data are characteristic of sediments that have encountered sodium-rich, saline, caustic waste solution, as documented in other reports at other suspect contamination sites around Hanford. Analyses of solutions from 1:1 water extracts reveal relatively balanced cation and anion concentrations, indicating that most of the geochemical species have been accounted for. The water extract data for affected sediments also indicate unusually high concentrations of aluminum, iron, and phosphorus. The relatively high concentrations of aluminum and iron may be the result of dissolution of secondary amorphous phases that precipitated after a reactive plume partially dissolved aluminum- and iron-bearing phases as it migrated through the sediment column. On the other hand, the presence of elevated concentrations of phosphorous may be the tell-tale signature of wastes

Characterization of Direct-Push Vadose Zone Sediments from the 241-B and 241-BX Tank Farms

Energy Technology Data Exchange (ETDEWEB)

Brown, Christopher F.; Icenhower, Jonathan P.; Um, Wooyong; Bjornstad, Bruce N.; Valenta, Michelle M.; Iovin, Cristian; Lanigan, David C.; Clayton, Ray E.; Geiszler, Keith N.; Clayton, Eric T.; Kutnyakov, Igor V.; Baum, Steven R.; Lindberg, Michael J.; Orr, Robert D.

2007-12-21

Geochemical tests provide evidence for the transit of a plume of caustic waste solution through the sediment column at the Hanford 241-B and -BX Tank Farms. Direct-push samples recovered from boreholes surrounding Tanks 241-B-110 and 241-BX-102 and related waste transfer lines and diversion boxes included sediments typical of those previously recovered from other localities on the Hanford Site. The Hanford formation sediments are dominantly quartzo-feldspathic sands strewn with lithic fragments, displaying a range of particle size distributions and sorting characteristics. Some moderately well-sorted, fine-grained lithologies are interpreted as lenticular bodies irregularly dispersed in coarser-grained, more poorly sorted sediments. Tier I tests conducted on the vadose zone sediments revealed an inverse correlation between moisture content and sediment size fraction (i.e., there is greater moisture content in finer-grained sediments). The Tier I tests also showed that the pore water solutions were likely sodium-rich, moderately saline, and possessed higher pH values than background (untainted) sediments. These data are characteristic of sediments that have encountered sodium-rich, saline, caustic waste solution, as documented in other reports at other suspect contamination sites around Hanford. Analyses of solutions from 1:1 water extracts reveal relatively balanced cation and anion concentrations, indicating that most of the geochemical species have been accounted for. The water extract data for affected sediments also indicate unusually high concentrations of aluminum, iron, and phosphorus. The relatively high concentrations of aluminum and iron may be the result of dissolution of secondary amorphous phases that precipitated after a reactive plume partially dissolved aluminum- and iron-bearing phases as it migrated through the sediment column. On the other hand, the presence of elevated concentrations of phosphorous may be the tell-tale signature of wastes

Distribution of surface deposits in the Gijón urban subsurface (NW Spain)

Science.gov (United States)

López-Fernández, Carlos; Pando, Luis; María Díaz-Díaz, Luis; Arias, Daniel; Flor-Blanco, Germán

2016-04-01

Gijón is the second most populous city (278.285 inhabitants in 2015) of the Spanish north coast. The urban subsurface is mostly formed (≈80%) by Quaternary sediments which exceeds 20 meters of thickness when cover the Jurassic carbonate basement (Gijón Formation). This work has allowed to know the spatial distribution of the different types of sediments in urban area. To do this, a GIS database was developed that contains data from more than 450 geotechnical reports. Information provided by fieldwork and the exploration of excavation works in progress throughout the city was also incorporated. Currently, the geodatabase developed comprises more than 1,400 site investigation points: boreholes, dynamic probing and trial pits. This has been supplemented with hundreds on-site and laboratory tests carried out on core samples of soils and rocks, performed following renowned testing standards. Quaternary formations, largely concealed below man-made fills, set up two main areas composed by granular and cohesive soils: the littoral zone at the northern urban perimeter and the continental zone at the southern sector. The first one, fluvial-marine deposits, consist of sandy sediments related to beach/dune systems and marsh deposits, with gravels, organogenic mud and layers of Holocene peat. The southern area is composed by residual clays -silt and coarse-grained soils to a lesser extent- linked to the dissolution of the Mesozoic substrate. Associated with these two types of deposits, two main aquifers can be differentiated. The thickness of the man-made deposits, fluvial-marine sediments and residual deposits was determined in this work. Thus, a 3-d model of Gijón subsurface at urban scale was obtained. A map of the Jurassic bedrock bedrock was also produced. Building construction works may be affected by the geotechnical behavior of the Quaternary deposits and the saturation of granular sediments., This is because the shallowness of the water table, the usual low

Effects of the Ionosphere on Passive Microwave Remote Sensing of Ocean Salinity from Space

Science.gov (United States)

LeVine, D. M.; Abaham, Saji; Hildebrand, Peter H. (Technical Monitor)

2001-01-01

Among the remote sensing applications currently being considered from space is the measurement of sea surface salinity. The salinity of the open ocean is important for understanding ocean circulation and for modeling energy exchange with the atmosphere. Passive microwave remote sensors operating near 1.4 GHz (L-band) could provide data needed to fill the gap in current coverage and to complement in situ arrays being planned to provide subsurface profiles in the future. However, the dynamic range of the salinity signal in the open ocean is relatively small and propagation effects along the path from surface to sensor must be taken into account. In particular, Faraday rotation and even attenuation/emission in the ionosphere can be important sources of error. The purpose or this work is to estimate the magnitude of these effects in the context of a future remote sensing system in space to measure salinity in L-band. Data will be presented as a function of time location and solar activity using IRI-95 to model the ionosphere. The ionosphere presents two potential sources of error for the measurement of salinity: Rotation of the polarization vector (Faraday rotation) and attenuation/emission. Estimates of the effect of these two phenomena on passive remote sensing over the oceans at L-band (1.4 GHz) are presented.

Mapping to assess feasibility of using subsurface intakes for SWRO, Red Sea coast of Saudi Arabia

KAUST Repository

Dehwah, Abdullah

2013-11-19

Use of subsurface intakes for seawater reverse osmosis desalination (SWRO) systems is known to improve raw water quality, reduce use of chemicals, improve operational reliability, and reduce the life cycle cost of desalination. A key issue in planning for the development of a SWRO facility that would potentially use a subsurface intake is the characterization of the coastal and nearshore geology of a region to ascertain the types of subsurface intakes that could be used and their respective costs. It is the purpose of this research to document a new methodology that can be used for planning and assessment of the feasibility of using subsurface intake systems for SWRO facilities at any location in the world. The Red Sea shoreline and nearshore area of Saudi Arabia were mapped and sediments were sampled from the Yemen border north of the Jordan border, a distance of about 1,950 km. Seventeen different coastal environments were defined, mapped, and correlated to the feasibility of using various types of subsurface intake systems. Six environments were found to have favorable characteristics for development of large-scale subsurface intakes. The most favorable of these coastal environments includes: (1) beaches and nearshore areas containing carbonate or siliciclastic sands with minimum mud concentrations and environmentally sensitive bottom community biota or fauna (A1, A2, and A3), limestone rocky shorelines with an offshore carbonate or siliciclastic sand bottom underlain by soft limestone and a barren area lying between the shoreline and the offshore reef (B1, B5), and wadi sediments on the beach (mixture of pebbles, gravel, and sand) with a corresponding nearshore area containing either siliciclastic sand and/or a marine hard ground (soft limestone or sandstone) (C2). It was found that seabed galleries were the subsurface intake type with the highest feasibility for development of large-capacity intakes. The geological characteristics of the offshore sea bottom

Hundred years of environmental change and phytoplankton ecophysiological variability archived in coastal sediments.

Directory of Open Access Journals (Sweden)

Sofia Ribeiro

Full Text Available Marine protist species have been used for several decades as environmental indicators under the assumption that their ecological requirements have remained more or less stable through time. However, a growing body of evidence suggests that marine protists, including several phytoplankton species, are in fact highly diverse and may quickly respond to changes in the environment. Predicting how future climate will impact phytoplankton populations is important, but this task has been challenged by a lack of time-series of ecophysiological parameters at time-scales relevant for climate studies (i.e. at least decadal. Here, we report on ecophysiological variability in a marine dinoflagellate over a 100-year period of well-documented environmental change, by using the sedimentary archive of living cysts from a Scandinavian fjord (Koljö Fjord, Sweden. During the past century, Koljö Fjord has experienced important changes in salinity linked to the North Atlantic Oscillation (NAO. We revived resting cysts of Pentapharsodinium dalei preserved in the fjord sediments and determined growth rates for 18 strains obtained from 3 sediment core layers at salinity 15 and 30, which represent extreme sea-surface conditions during periods of predominantly negative and positive NAO phases, respectively. Upper pH tolerance limits for growth were also tested. In general, P. dalei grew at a higher rate in salinity 30 than 15 for all layers, but there were significant differences among strains. When accounting for inter-strain variability, cyst age had no effect on growth performance or upper pH tolerance limits for this species, indicating a stable growth response over the 100-year period in spite of environmental fluctuations. Our findings give some support for the use of morphospecies in environmental studies, particularly at decadal to century scales. Furthermore, the high intra-specific variability found down to sediment layers dated as ca. 50 years-old indicates

Nitrate, nitrite, and nitrous oxide transformations in sediments along a salinity gradient in the Weser Estuary

DEFF Research Database (Denmark)

Nielsen, Michael; Gieseke, Armin; de Beer, Dirk

2009-01-01

by activity of nitrite oxidisers in oxic surface layers. In contrast, high rates of NO2- release occurred in marine sediment, where NO2- production was predominantly associated with incomplete nitrification in oxic layers. Similarly, stimulated partial nitrification due to NH4+ addition led to NO2- liberation...

Seasonality of community structure and carbon flow in Narragansett Bay sediments

International Nuclear Information System (INIS)

Rudnick, D.T.

1984-01-01

Seasonal patterns of benthic community dynamics and the pathways of detrital decomposition in Narragansett Bay were examined. Benthic meiofauna and macrofauna exhibited a pronounced seasonality, with peak abundances in the late spring and minima in the late summer. This pattern was most pronounced for surface dwelling fauna, particularly harpacticoid copepods. These results were attributed to the seasonality of detrital inputs to the sediment and the fate of these inputs. A six month study in which 14 C-sodium bicarbonate was added to a large (13 m 3 ) microcosm enabled the author to observe pathways of carbon flow. Half of the labeled organic carbon that was deposited on the sediment during the winter and spring was found in the sediment in July. At least 20 gC/m 2 had accumulated since December. Within the sediment, the existence of two discrete food webs was distinguished by measurement of faunal specific activity. Surface fauna, dominated by the meiofauna, exclusively assimilate fresh (labeled) organics, while subsurface fauna (meiofauna and macrofauna) predominantly assimilated older, non-labeled organics for the duration of the study. Only the subsurface food web had access to the storage of buried detritus. While there was a surplus of detritus for both food webs during the winter and spring, the authors expect that benthic respiration rates exceed organic deposition rates during the summer. Detrital storage may be critical for the survival of the fauna through the summer

Experimental measurements of the SP response to concentration and temperature gradients in sandstones with application to subsurface geophysical monitoring

Science.gov (United States)

Leinov, E.; Jackson, M. D.

2014-09-01

Exclusion-diffusion potentials arising from temperature gradients are widely neglected in self-potential (SP) surveys, despite the ubiquitous presence of temperature gradients in subsurface settings such as volcanoes and hot springs, geothermal fields, and oil reservoirs during production via water or steam injection. Likewise, with the exception of borehole SP logging, exclusion-diffusion potentials arising from concentration gradients are also neglected or, at best, it is assumed that the diffusion potential dominates. To better interpret these SP sources requires well-constrained measurements of the various coupling terms. We report measurements of thermoelectric and electrochemical exclusion-diffusion potentials across sandstones saturated with NaCl brine and find that electrode effects can dominate the measured voltage. After correcting for these, we find that Hittorf transport numbers are the same within experimental error regardless of whether ion transport occurs in response to temperature or concentration gradients over the range of NaCl concentration investigated that is typical of natural systems. Diffusion potentials dominate only if the pore throat radius is more than approximately 4000 times larger than the diffuse layer thickness. In fine-grained sandstones with small pore throat diameter, this condition is likely to be met only if the saturating brine is of relatively high salinity; thus, in many cases of interest to earth scientists, exclusion-diffusion potentials will comprise significant contributions from both ionic diffusion through, and ionic exclusion from, the pore space of the rock. However, in coarse-grained sandstones, or sandstones saturated with high-salinity brine, exclusion-diffusion potentials can be described using end-member models in which ionic exclusion is neglected. Exclusion-diffusion potentials in sandstones depend upon pore size and salinity in a complex way: they may be positive, negative, or zero depending upon sandstone

Anaerobic U(IV) Bio-oxidation and the Resultant Remobilization of Uranium in Contaminated Sediments

International Nuclear Information System (INIS)

Coates, John D.

2005-01-01

A proposed strategy for the remediation of uranium (U) contaminated sites is based on immobilizing U by reducing the oxidized soluble U, U(VI), to form a reduced insoluble end product, U(IV). Due to the use of nitric acid in the processing of nuclear fuels, nitrate is often a co-contaminant found in many of the environments contaminated with uranium. Recent studies indicate that nitrate inhibits U(VI) reduction in sediment slurries. However, the mechanism responsible for the apparent inhibition of U(VI) reduction is unknown, i.e. preferential utilization of nitrate as an electron acceptor, direct biological oxidation of U(IV) coupled to nitrate reduction, and/or abiotic oxidation by intermediates of nitrate reduction. Recent studies indicates that direct biological oxidation of U(IV) coupled to nitrate reduction may exist in situ, however, to date no organisms have been identified that can grow by this metabolism. In an effort to evaluate the potential for nitrate-dependent bio-oxidation of U(IV) in anaerobic sedimentary environments, we have initiated the enumeration of nitrate-dependent U(IV) oxidizing bacteria. Sediments, soils, and groundwater from uranium (U) contaminated sites, including subsurface sediments from the NABIR Field Research Center (FRC), as well as uncontaminated sites, including subsurface sediments from the NABIR FRC and Longhorn Army Ammunition Plant, Texas, lake sediments, and agricultural field soil, sites served as the inoculum source. Enumeration of the nitrate-dependent U(IV) oxidizing microbial population in sedimentary environments by most probable number technique have revealed sedimentary microbial populations ranging from 9.3 x 101 - 2.4 x 103 cells (g sediment)-1 in both contaminated and uncontaminated sites. Interestingly uncontaminated subsurface sediments (NABIR FRC Background core FB618 and Longhorn Texas Core BH2-18) both harbored the most numerous nitrate-dependent U(IV) oxidizing population 2.4 x 103 cells (g sediment)-1

Inferring sediment connectivity from high-resolution DEMs of Difference

Science.gov (United States)

Heckmann, Tobias; Vericat, Damià

2017-04-01

Topographic changes due to the erosion and deposition of bedrock, sediments and soil can be measured by differencing Digital Elevation Models (DEM) acquired at different points in time. So-called morphological sediment budgets can be computed from such DEMs of Difference (DoD) on an areal rather than a point basis. The advent of high-resolution and highly accurate surveying techniques (e.g. LiDAR, SfM), together with recent advances of survey platforms (e.g. UaVs) provides opportunities to improve the spatial and temporal scale (in terms of extent and resolution), the availability and quality of such measurements. Many studies have used DoD to investigate and interpret the spatial pattern of positive and negative vertical differences in terms of erosion and deposition, or of horizontal movement. Vertical differences can be converted to volumes, and negative (erosion) and positive (deposition) volumetric changes aggregated for spatial units (e.g., landforms, hillslopes, river channels) have been used to compute net balances. We argue that flow routing algorithms common in digital terrain analysis provide a means to enrich DoD-based investigations with some information about (potential) sediment pathways - something that has been widely neglected in previous studies. Where the DoD indicates a positive surface change, flow routing delineates the upslope area where the deposited sediment has potentially been derived from. In the downslope direction, flow routing indicates probable downslope pathways of material eroded/detached/entrained where the DoD shows negative surface change. This material has either been deposited along these pathways or been flushed out of the area of investigation. This is a question of sediment connectivity, a property of a system (i.e. a hillslope, a sub-/catchment) that describes its potential to move sediment through itself. The sediment pathways derived from the DEM are related to structural connectivity, while the spatial pattern of (net

Alfalfa (Medicago sativa L.) is tolerant to higher levels of salinity than previous guidelines indicated: Implications of field and greenhouse studies

Science.gov (United States)

Putnam, Daniel H.; Benes, Sharon; Galdi, Giuliano; Hutmacher, Bob; Grattan, Steve

2017-04-01

Alfalfa (Medicago sativa L.) is the most widely grown leguminous forage crop in North America and is valued for high productivity, quality, economic value, and for dairy productivity. Alfalfa has historically been classified as moderately sensitive to saline conditions, with yield declines predicted at >2 dS/m in the saturated soil paste extract. However, greenhouse, sand tank, and field studies over the past five years have confirmed that alfalfa can be grown with limited negative effects at much higher salinity levels. A broad collection of alfalfa varieties has exhibited a range of resistance at irrigation water salinities >5 dS/m ECw in greenhouse trials, with significant variation due to variety. USDA-ARS sand tank studies indicated similar or greater tolerances closer to 8 dS/m in the soil water, in addition to confirmation of significant varietal differences. A three-year field study on clay loam soil with applications of 5-7 dS/m ECw irrigation water indicated normal yields and excellent stand survivability. A second field study in the same soil type with levels from 8-10 dS/m ECw showed yield reductions of 10-15% but economic yields were still achieved at those levels. Field and greenhouse studies were conducted with mixed salt saline sodic waters typical of the San Joaquin Valley of California. Field evaluation of variety performance was subject to greater variation due to secondary salinity-soil interactions including water infiltration and crusting problems, not only salinity per-se. Thus, adequate irrigation water availability to the crop may be as important as salinity in impacting yields under field conditions. Once established, the deep-rooted characteristics of alfalfa enable utilization of deeper subsurface moisture, even at moderate to high salinity levels, as documented by USDA lysimeter studies. Significant advantages to salinity-tolerant varieties have been observed. It will be important to consider specific management factors which may enable

Viruses-to-mobile genetic elements skew in the deep Atlantis II brine pool sediments

KAUST Repository

Adel, Mustafa

2016-09-06

The central rift of the Red Sea has 25 brine pools with different physical and geochemical characteristics. Atlantis II (ATIID), Discovery Deeps (DD) and Chain Deep (CD) are characterized by high salinity, temperature and metal content. Several studies reported microbial communities in these brine pools, but few studies addressed the brine pool sediments. Therefore, sediment cores were collected from ATIID, DD, CD brine pools and an adjacent brine-influenced site. Sixteen different lithologic sediment sections were subjected to shotgun DNA pyrosequencing to generate 1.47 billion base pairs (1.47 × 109 bp). We generated sediment-specific reads and attempted to annotate all reads. We report the phylogenetic and biochemical uniqueness of the deepest ATIID sulfur-rich brine pool sediments. In contrary to all other sediment sections, bacteria dominate the deepest ATIID sulfur-rich brine pool sediments. This decrease in virus-to-bacteria ratio in selected sections and depth coincided with an overrepresentation of mobile genetic elements. Skewing in the composition of viruses-to-mobile genetic elements may uniquely contribute to the distinct microbial consortium in sediments in proximity to hydrothermally active vents of the Red Sea and possibly in their surroundings, through differential horizontal gene transfer.

Water cycle and salinity dynamics in the mangrove forests of Europa and Juan de Nova Islands, southwest Indian Ocean.

Science.gov (United States)

Lambs, Luc; Mangion, Perrine; Mougin, Eric; Fromard, François

2016-01-30

The functioning of mangrove forests found on small coralline islands is characterized by limited freshwater inputs. Here, we present data on the water cycling of such systems located on Europa and Juan de Nova Islands, Mozambique Channel. In order to better understand the water cycle and mangrove growth conditions, we have analysed the hydrological and salinity dynamics of the systems by gauge pressure and isotopic tracing (δ18O and δ2H values). Both islands have important seawater intrusion as measured by the water level change and the high salinities in the karstic ponds. Europa Island displays higher salinity stress, with its inner lagoon, but presents a pluri-specific mangrove species formation ranging from shrub to forest stands. No freshwater signal could be detected around the mangrove trees. On Juan de Nova Island, the presence of sand and detrital sediment allows the storage of some amount of rainfall to form a brackish groundwater. The mangrove surface area is very limited with only small mono-specific stands being present in karstic depression. On the drier Europa Island, the salinity of all the water points is equal to or higher than that of the seawater, and on Juan de Nova the groundwater salinity is lower (5 to 20 PSU). This preliminary study shows that the karstic pothole mangroves exist due to the sea connection through the fractured coral and the high tidal dynamics.

Late Frasnian sedimentation cycles in the Appalachian basin—possible evidence for high frequency eustatic sea-level changes

Science.gov (United States)

Filer, Jonathan K.

2002-12-01

During the late Frasnian, 11 fourth-order progradational/retrogradational marine sedimentation cycles were deposited in the Appalachian foreland basin. Mapping based primarily on subsurface data demonstrates the continuity of these cycles over a distance of 700 km. Cyclicity in distal facies occurs as alternations of organic-rich and organic-poor shales, two of the organic shales can be correlated with the transgressive "Kellwasser Beds" of Europe. In more proximal facies, recurring lobes of siltstone and sandstone were deposited. Based on lithologic indices, the temporal pattern shows significant variation in the strength of relative facies change during deposition. In particular, two times of particularly pronounced progradation correspond to previously recognized eustatic sea-level falls. The correlation of portions of Appalachian basin depositional cyclicity with global sea-level events suggests that the entire sequence of 11 cycles, with estimated average duration of around 100-150 ka, were the result of high-frequency eustatic sea-level changes. This in turn would be consistent with a brief period of late Frasnian glaciation, as others have previously suggested.

Interpreting stream sediment fingerprints against primary and secondary source signatures in agricultural catchments

Science.gov (United States)

Blake, Will H.; Haley, Steve; Smith, Hugh G.; Taylor, Alex; Goddard, Rupert; Lewin, Sean; Fraser, David

2013-04-01

Many sediment fingerprinting studies adopt a black box approach to source apportionment whereby the properties of downstream sediment are compared quantitatively to the geochemical fingerprints of potential catchment sources without consideration of potential signature development or modification during transit. Working within a source-pathway-receptor framework, this study aimed to undertake sediment source apportionment within 6 subcatchments of an agricultural river basin with specific attention to the potential role of contaminants (vehicle emissions and mine waste) in development of stream sediment signatures. Fallout radionuclide (FRN) and geochemical fingerprinting methods were adopted independently to establish source signatures for primary sediment sources of surface and subsurface soil materials under various land uses plus reworked mine and 'secondary' soil material deposited, in transit, along road networks. FRN data demonstrated expected variability between surface soil (137Cs = 14 ± 3 Bq kg-1; 210Pbxs = 40 ± 7 Bq kg-1) and channel bank materials (137Cs = 3 ± 1 Bq kg-1; 210Pbxs = 24 ± 5 Bq kg-1) but road transported soil material was considerably elevated in 210Pbxs (up to 673 ± 51 Bq kg-1) due to sediment interaction with pluvial surface water within the road network. Geochemical discrimination between surface and subsurface soil materials was dominated by alkaline earth and alkali metals e.g. Ba, Rb, Ca, K, Mg which are sensitive to weathering processes in soil. Magnetic susceptibility and heavy metals were important discriminators of road transported material which demonstrated transformation of the signatures of material transported via the road network. Numerical unmixing of stream sediment indicated that alongside channel bank erosion, road transported material was an important component in some systems in accord with FRN evidence. While mining spoil also ranked as a significant source in an affected catchment, perhaps related to legacy

Characterization of subsurface sediments at a site of gasoline contamination

International Nuclear Information System (INIS)

Bishop, D.J.; Krauter, P.W.; Jovanovich, M.C.; Lee, K.; Nelson, S.C.; Noyes, C.

1992-02-01

The Dynamic Underground Stripping Project combines monitored steam injection and electrical heating to treat in situ a gasoline plume resulting from leakage of an underground storage tank. A preliminary field demonstration of this system was performed at an uncontaminated site (Clean Site) a few hundred feet away with similar geology to that at the Gasoline Spill (GS) area. This paper describes characterization efforts at both sites and highlights what we rearmed at the Clean Site that helped us plan our operations more effectively at the GS. To validate the success of the Dynamic Underground Stripping Project, we require a detailed understanding of the physical, geological, hydrological, chemical, and biological nature of the demonstration sites and how these parameters change as a result of the Dynamic Stripping processes. The characterization process should also provide data to estimate the masses of contaminants present and their spatial distribution before and after the remedial process to (1) aid in the planning for placement of injection and extraction wells, (2) provide physical data to develop conceptual models, (3) validate subsurface imaging techniques, and (4) confirm regulatory compliance

Geochemical characterisation of Elbe river high flood sediments

Energy Technology Data Exchange (ETDEWEB)

Krueger, F. [UFZ - Umweltforschungszentrum Leipzig-Halle GmbH, Falkenberg (Germany). Sektion Boden-/Gewaesserforschung]|[UFZ - Umweltforschungszentrum Leipzig-Halle GmbH, Magdeburg (Germany). Sektion Gewaesserforschung; Rupp, H.; Meissner, R. [UFZ - Umweltforschungszentrum Leipzig-Halle GmbH, Falkenberg (Germany). Sektion Boden-/Gewaesserforschung; Lohse, M.; Buettner, O.; Friese, K. [UFZ - Umweltforschungszentrum Leipzig-Halle GmbH, Magdeburg (Germany). Sektion Gewaesserforschung; Miehlich, G. [Hamburg Univ. (Germany). Inst. fuer Bodenkunde

2001-07-01

Quality aims for land usage in flood plains have to be worked out in the Russian-German research project 'Effects of floods on the pollution of agricultural used flood plain soils of the Oka River and the Elbe River'. It is financed by the Germany Ministry of Education and Research (FKZ 02 WT 9617/0). Beside the characterisation of the present pollution of soils for the middle Elbe, it is necessary to prognosticate the current pollutant input. At the examination site nearby Wittenberge, Elbe River kilometers 435 and 440, natural deposited flood sediments were sampled by artificial lawn mats. By the geochemical characterisation it is possible to record the metal input into the flood plain and to win knowledge about the sedimentation process. The results of sediment investigation of the high flood in spring 1997 are presented. (orig.)

High-resolution OSL chronology of a sediment core from Lake Nam Co on the southern Tibetan Plateau: Comparison with radiocarbon dating

Science.gov (United States)

Long, Hao; Shen, Ji; Haberzettl, Torsten; Fuchs, Markus; Frechen, Manfred; Wang, Junbo

2013-04-01

Numerous studies on lake sediment cores from the Tibetan Plateau aimed to reconstruct spatial and temporal changes of the late Glacial and Holocene monsoon variations, which are characterized by fluctuations in precipitation and expansion of monsoonal air masses across the Plateau. Accurate and reliable dating of lacustrine deposits is of crucial importance in both the reconstruction of palaeolake and palaeoclimate evolution and the understanding of the mechanisms for climate changes, especially abrupt changes of regional-hemispheric hydrological circulation. Radiocarbon dating is the most commonly used method for establishing chronologies of lake sediments. However, 14C dating of such sediments could be problematic due to the lack of organic matter or a reservoir effect, which appears common in radiocarbon dating of lacustrine sediments from the Tibetan Plateau. In this study, ca. 10.5 m long core (NC core) was retrieved from the water depth of 93 m at Nam Co Lake, which is the second largest saline lake in China, located on the southern Tibetan Plateau. For this core, high-resolution samples (23 samples) were obtained for optically stimulated luminescence (OSL) dating. Quartz of fine-grain (4-11 μm) fraction were extracted from this samples for OSL dating, which is compared with the 14C chronology of NC core based on accelerator mass spectrometry (AMS) dating of bulk organic matter of 22 samples. The sample from the top of NC core was dated to approximate zero age, indicating the sediments bleached well before deposition. Luminescence behaviors of the study samples further confirmed the robustness of OSL ages. Comparison between OSL and 14C ages suggested that: (1) two kinds of ages are in agreement within error from top to 1.8 m, (2) from 1.8 m to the base of NC core, the 14C ages show a general trend to ca. 4 ka higher ages than the OSL ages. Although 14C dating overestimate the ages from 1.8 m to base, they still show the general trend in sedimentation rate

Effects of alkalinity and salinity at low and high light intensity on hydrogen isotope fractionation of long-chain alkenones produced by Emiliania huxleyi

Directory of Open Access Journals (Sweden)

G. M. Weiss

2017-12-01

Full Text Available Over the last decade, hydrogen isotopes of long-chain alkenones have been shown to be a promising proxy for reconstructing paleo sea surface salinity due to a strong hydrogen isotope fractionation response to salinity across different environmental conditions. However, to date, the decoupling of the effects of alkalinity and salinity, parameters that co-vary in the surface ocean, on hydrogen isotope fractionation of alkenones has not been assessed. Furthermore, as the alkenone-producing haptophyte, Emiliania huxleyi, is known to grow in large blooms under high light intensities, the effect of salinity on hydrogen isotope fractionation under these high irradiances is important to constrain before using δDC37 to reconstruct paleosalinity. Batch cultures of the marine haptophyte E. huxleyi strain CCMP 1516 were grown to investigate the hydrogen isotope fractionation response to salinity at high light intensity and independently assess the effects of salinity and alkalinity under low-light conditions. Our results suggest that alkalinity does not significantly influence hydrogen isotope fractionation of alkenones, but salinity does have a strong effect. Additionally, no significant difference was observed between the fractionation responses to salinity recorded in alkenones grown under both high- and low-light conditions. Comparison with previous studies suggests that the fractionation response to salinity in culture is similar under different environmental conditions, strengthening the use of hydrogen isotope fractionation as a paleosalinity proxy.

Effects of alkalinity and salinity at low and high light intensity on hydrogen isotope fractionation of long-chain alkenones produced by Emiliania huxleyi

Science.gov (United States)

Weiss, Gabriella M.; Pfannerstill, Eva Y.; Schouten, Stefan; Sinninghe Damsté, Jaap S.; van der Meer, Marcel T. J.

2017-12-01

Over the last decade, hydrogen isotopes of long-chain alkenones have been shown to be a promising proxy for reconstructing paleo sea surface salinity due to a strong hydrogen isotope fractionation response to salinity across different environmental conditions. However, to date, the decoupling of the effects of alkalinity and salinity, parameters that co-vary in the surface ocean, on hydrogen isotope fractionation of alkenones has not been assessed. Furthermore, as the alkenone-producing haptophyte, Emiliania huxleyi, is known to grow in large blooms under high light intensities, the effect of salinity on hydrogen isotope fractionation under these high irradiances is important to constrain before using δDC37 to reconstruct paleosalinity. Batch cultures of the marine haptophyte E. huxleyi strain CCMP 1516 were grown to investigate the hydrogen isotope fractionation response to salinity at high light intensity and independently assess the effects of salinity and alkalinity under low-light conditions. Our results suggest that alkalinity does not significantly influence hydrogen isotope fractionation of alkenones, but salinity does have a strong effect. Additionally, no significant difference was observed between the fractionation responses to salinity recorded in alkenones grown under both high- and low-light conditions. Comparison with previous studies suggests that the fractionation response to salinity in culture is similar under different environmental conditions, strengthening the use of hydrogen isotope fractionation as a paleosalinity proxy.

Modeling subsurface stormflow initiation in low-relief landscapes

Science.gov (United States)

Hopp, Luisa; Vaché, Kellie B.; Rhett Jackson, C.; McDonnell, Jeffrey J.

2015-04-01

Shallow lateral subsurface flow as a runoff generating mechanism at the hillslope scale has mostly been studied in steeper terrain with typical hillside angles of 10 - 45 degrees. These studies have shown that subsurface stormflow is often initiated at the interface between a permeable upper soil layer and a lower conductivity impeding layer, e.g. a B horizon or bedrock. Many studies have identified thresholds of event size and soil moisture states that need to be exceeded before subsurface stormflow is initiated. However, subsurface stormflow generation on low-relief hillslopes has been much less studied. Here we present a modeling study that investigates the initiation of subsurface stormflow on low-relief hillslopes in the Upper Coastal Plain of South Carolina, USA. Hillslopes in this region typically have slope angles of 2-5 degrees. Topsoils are sandy, underlain by a low-conductivity sandy clay loam Bt horizon. Subsurface stormflow has only been intercepted occasionally in a 120 m long trench, and often subsurface flow was not well correlated with stream signals, suggesting a disconnect between subsurface flow on the hillslopes and stream flow. We therefore used a hydrologic model to better understand which conditions promote the initiation of subsurface flow in this landscape, addressing following questions: Is there a threshold event size and soil moisture state for producing lateral subsurface flow? What role does the spatial pattern of depth to the impeding clay layer play for subsurface stormflow dynamics? We reproduced a section of a hillslope, for which high-resolution topographic data and depth to clay measurements were available, in the hydrologic model HYDRUS-3D. Soil hydraulic parameters were based on experimentally-derived data. The threshold analysis was first performed using hourly climate data records for 2009-2010 from the study site to drive the simulation. For this period also trench measurements of subsurface flow were available. In addition

Suspended sediment transport and shoaling in the Munambam fishery harbour, Kerala

Digital Repository Service at National Institute of Oceanography (India)

Revichandran, C.; Abraham, P.; Josanto, V.; Sankaranarayanan, V.N.

Results of the monthly synoptic field observations of vertical profiles of suspended sediment concentration, current velocity and salinity carried out in the Azhicode Estuary are presented with a view to understand the shoaling and siltation...

White spot syndrome virus (WSSV) infection in shrimp (Litopenaeus vannamei) exposed to low and high salinity.

Science.gov (United States)

Ramos-Carreño, Santiago; Valencia-Yáñez, Ricardo; Correa-Sandoval, Francisco; Ruíz-García, Noé; Díaz-Herrera, Fernando; Giffard-Mena, Ivone

2014-09-01

White spot syndrome virus (WSSV) has a worldwide distribution and is considered one of the most pathogenic and devastating viruses to the shrimp industry. A few studies have explored the effect of WSSV on shrimp acclimated to low (5 practical salinity units [psu]) or high ([40 psu) salinity conditions. In this work, we analysed the physiological response of WSSV-infected Litopenaeus vannamei juveniles that were acclimated to different salinities (5, 15, 28, 34 and 54 psu). We evaluated the osmotic response and survival of the shrimp at different times after infection (0 to 48 hours), and we followed the expression levels of a viral gene (vp664) in shrimp haemolymph using real-time PCR. Our results indicate that the susceptibility of the shrimp to the virus increased at extreme salinities (5 and 54 psu), with higher survival rates at 15 and 28 psu, which were closer to the iso-osmotic point (24.7 psu, 727.5 mOsmol/kg). Acute exposure to the virus made the haemolymph less hyperosmotic at 5 and 15 psu and less hypo-osmotic at higher salinities ([28 psu). The capacity of white shrimp to osmoregulate, and thus survive, significantly decreased following WSSV infection. According to our results, extreme salinities (5 or 54 psu) are more harmful than seawater.

Subsurface Ventilation System Description Document

Energy Technology Data Exchange (ETDEWEB)

Eric Loros

2001-07-25

The Subsurface Ventilation System supports the construction and operation of the subsurface repository by providing air for personnel and equipment and temperature control for the underground areas. Although the system is located underground, some equipment and features may be housed or located above ground. The system ventilates the underground by providing ambient air from the surface throughout the subsurface development and emplacement areas. The system provides fresh air for a safe work environment and supports potential retrieval operations by ventilating and cooling emplacement drifts. The system maintains compliance within the limits established for approved air quality standards. The system maintains separate ventilation between the development and waste emplacement areas. The system shall remove a portion of the heat generated by the waste packages during preclosure to support thermal goals. The system provides temperature control by reducing drift temperature to support potential retrieval operations. The ventilation system has the capability to ventilate selected drifts during emplacement and retrieval operations. The Subsurface Facility System is the main interface with the Subsurface Ventilation System. The location of the ducting, seals, filters, fans, emplacement doors, regulators, and electronic controls are within the envelope created by the Ground Control System in the Subsurface Facility System. The Subsurface Ventilation System also interfaces with the Subsurface Electrical System for power, the Monitored Geologic Repository Operations Monitoring and Control System to ensure proper and safe operation, the Safeguards and Security System for access to the emplacement drifts, the Subsurface Fire Protection System for fire safety, the Emplacement Drift System for repository performance, and the Backfill Emplacement and Subsurface Excavation Systems to support ventilation needs.

Subsurface Ventilation System Description Document

Energy Technology Data Exchange (ETDEWEB)

NONE

2000-10-12

The Subsurface Ventilation System supports the construction and operation of the subsurface repository by providing air for personnel and equipment and temperature control for the underground areas. Although the system is located underground, some equipment and features may be housed or located above ground. The system ventilates the underground by providing ambient air from the surface throughout the subsurface development and emplacement areas. The system provides fresh air for a safe work environment and supports potential retrieval operations by ventilating and cooling emplacement drifts. The system maintains compliance within the limits established for approved air quality standards. The system maintains separate ventilation between the development and waste emplacement areas. The system shall remove a portion of the heat generated by the waste packages during preclosure to support thermal goals. The system provides temperature control by reducing drift temperature to support potential retrieval operations. The ventilation system has the capability to ventilate selected drifts during emplacement and retrieval operations. The Subsurface Facility System is the main interface with the Subsurface Ventilation System. The location of the ducting, seals, filters, fans, emplacement doors, regulators, and electronic controls are within the envelope created by the Ground Control System in the Subsurface Facility System. The Subsurface Ventilation System also interfaces with the Subsurface Electrical System for power, the Monitored Geologic Repository Operations Monitoring and Control System to ensure proper and safe operation, the Safeguards and Security System for access to the emplacement drifts, the Subsurface Fire Protection System for fire safety, the Emplacement Drift System for repository performance, and the Backfill Emplacement and Subsurface Excavation Systems to support ventilation needs.

Subsurface Facility System Description Document

International Nuclear Information System (INIS)

Eric Loros

2001-01-01

The Subsurface Facility System encompasses the location, arrangement, size, and spacing of the underground openings. This subsurface system includes accesses, alcoves, and drifts. This system provides access to the underground, provides for the emplacement of waste packages, provides openings to allow safe and secure work conditions, and interfaces with the natural barrier. This system includes what is now the Exploratory Studies Facility. The Subsurface Facility System physical location and general arrangement help support the long-term waste isolation objectives of the repository. The Subsurface Facility System locates the repository openings away from main traces of major faults, away from exposure to erosion, above the probable maximum flood elevation, and above the water table. The general arrangement, size, and spacing of the emplacement drifts support disposal of the entire inventory of waste packages based on the emplacement strategy. The Subsurface Facility System provides access ramps to safely facilitate development and emplacement operations. The Subsurface Facility System supports the development and emplacement operations by providing subsurface space for such systems as ventilation, utilities, safety, monitoring, and transportation

Algal massive growth in relation to water quality and salinity at Damietta, north of Egypt

Directory of Open Access Journals (Sweden)

Mohamed Ali Ibraheem Deyab

2015-02-01

Full Text Available Objective: To relate the proliferation and dominance of certain algal species at the Damietta and its relation to water quality. Methods: Water and algal biomass were bimonthly sampled from five selected sites at Damietta Province, Egypt during 2012. Algae were identified and quantified. Waters, algae and sediment were analyzed. Results: The physicochemical properties of water showed limited seasonal but substantial local variation. The high levels of nitrogen and phosphorus and turbidity of water pointed to marked eutrophication, which could enhance massive algal growth. The temporal fluctuation in temperature, exposure to industrial and domestic sewage and salinity results in succession between blooming algal species. Spirulina platensis and Chlorella vulgaris alternated in a moderately saline water and Oscillatoria agardhii and Mougeotia scalaris in a fresh water body during summer and winter respectively. Likewise, Microcystis aureginosa and Ulva lactuca alternated in a moderately saline site during autumn and summer respectively. Cladophora albida dominated a fish pond of brackish water and Dunaliella salina dominated the most saline water over the whole period of study. Conclusions: Growth of the predominant algal species is correlated to water quality. These species are of considerable nutritive value, with moderate contents of protein, carbohydrate, macronutrients and micronutrients, which evaluates them for usage as food (green and macroalgae, fodder or bio-fertilizer (cyanophytes.

Intelligent SUBsurface Quality : Intelligent use of subsurface infrastructure for surface quality

NARCIS (Netherlands)

Hooimeijer, F.L.; Kuzniecow Bacchin, T.; Lafleur, F.; van de Ven, F.H.M.; Clemens, F.H.L.R.; Broere, W.; Laumann, S.J.; Klaassen, R.G.; Marinetti, C.

2016-01-01

This project focuses on the urban renewal of (delta) metropolises and concentrates on the question how to design resilient, durable (subsurface) infrastructure in urban renewal projects using parameters of the natural system – linking in an efficient way (a) water cycle, (b) soil and subsurface

Influence of iron redox transformations on plutonium sorption to sediments

Energy Technology Data Exchange (ETDEWEB)

Hixon, A.E.; Powell, B.A. [Environmental Engineering and Earth Sciences, Clemson Univ., Clemson, SC (United States); Hu, Y.J.; Nitsche, H. [Dept. of Chemistry, Univ. of California, Berkeley, CA (United States); Lawrence Berkeley National Lab., Berkeley, CA (United States); Kaplan, D.I. [Savannah River National Lab., Aiken, SC (United States); Kukkadapu, R.K.; Qafoku, O. [Pacific Northwest National Lab., Richland, WA (United States)

2010-07-01

Plutonium subsurface mobility is primarily controlled by its oxidation state, which in turn is loosely coupled to the oxidation state of iron in the system. Experiments were conducted to examine the effect of sediment iron mineral composition and oxidation state on plutonium sorption and reduction. A pH 6.3 vadose zone sediment containing iron oxides and iron-containing phyllosilicates was treated with various complexants (ammonium oxalate) and reductants (hydroxylamine hydrochloride and dithionite-citrate-bicarbonate (DCB)) to selectively leach and/or reduce iron oxide and phyllosilicate/clay Fe(III). {sup 57}Fe-Moessbauer spectroscopy was used to identify initial iron mineral composition of the sediment and monitor dissolution and reduction of iron oxides and reduction of phyllosilicate Fe(III). {sup 57}Fe-Moessbauer spectroscopy showed that the Fe-mineral composition of the untreated sediment is: 25-30% hematite, 60-65% small-particle/Al-goethite, and < 10% Fe(III) in phyllosilicate; there was no detectable Fe(II). Upon reduction with a strong chemical reductant (dithionite-citrate-bicarbonate buffer), much of the hematite and goethite was removed. Partial reduction of phyllosilicate Fe(III) was evident in the sediments subjected to DCB treatment. Sorption of Pu(V) was monitored over one week for the untreated and each of five treated sediment fractions. Plutonium oxidation state speciation in the aqueous and solid phases was monitored using solvent extraction, coprecipitation, and XANES. The rate of sorption appears to correlate with the fraction of Fe(II) in the sediment (untreated or treated). Pu(V) was the only oxidation state measured in the aqueous phase, irrespective of treatment, whereas Pu(IV) and much smaller amounts of Pu(V) and Pu(VI) were measured in the solid phase. Surface-mediated reduction of Pu(V) to Pu(IV) occurred in treated and untreated sediment samples; Pu(V) remained on untreated sediment surface for two days before reducing to Pu

Effects of high salinity from desalination brine on growth, photosynthesis, water relations and osmolyte concentrations of seagrass Posidonia australis.

Science.gov (United States)

Cambridge, M L; Zavala-Perez, A; Cawthray, G R; Mondon, J; Kendrick, G A

2017-02-15

Highly saline brines from desalination plants expose seagrass communities to salt stress. We examined effects of raised salinity (46 and 54psu) compared with seawater controls (37psu) over 6weeks on the seagrass, Posidonia australis, growing in tanks with the aim of separating effects of salinity from other potentially deleterious components of brine and determining appropriate bioindicators. Plants survived exposures of 2-4weeks at 54psu, the maximum salinity of brine released from a nearby desalination plant. Salinity significantly reduced maximum quantum yield of PSII (chlorophyll a fluorescence emissions). Leaf water potential (Ψ w ) and osmotic potential (Ψ π ) were more negative at increased salinity, while turgor pressure (Ψ p ) was unaffected. Leaf concentrations of K + and Ca 2+ decreased, whereas concentrations of sugars (mainly sucrose) and amino acids increased. We recommend leaf osmolarity, ion, sugar and amino acid concentrations as bioindicators for salinity effects, associated with brine released in desalination plant outfalls. Copyright © 2016 Elsevier Ltd. All rights reserved.

Hydrogen sulfide: a new endogenous player in an old mechanism of plant tolerance to high salinity

Directory of Open Access Journals (Sweden)

Cristiane J. da-Silva

2017-10-01

Full Text Available ABSTRACT High salinity affects plants due to stimulation of osmotic stress. Cell signaling triggered by nitric oxide (NO and hydrogen sulfide (H2S activates a cascade of biochemical events that culminate in plant tolerance to abiotic and biotic stresses. For instance, the NO/H2S-stimulated biochemical events that occur in plants during response to high salinity include the control of reactive oxygen species, activation of antioxidant system, accumulation of osmoprotectants in cytosol, induction of K+ uptake and Na+ cell extrusion or its vacuolar compartmentation among others. This review is a compilation of what we have learned in the last 10 years about NO participation during cell signaling in response to high salinity as well as the role of H2S, a new player in the mechanism of plant tolerance to salt stress. The main sources of NO and H2S in plant cells is also discussed together with the evidence of interplay between both signaling molecules during response to stress.

Bacterioplankton community composition along a salinity gradient of sixteen high-mountain lakes located on the Tibetan Plateau, China

NARCIS (Netherlands)

Wu, Q.L.; Zwart, G.; Schauer, M.; Kamst-van Agterveld, M.P.; Hahn, M.W.

2006-01-01

The influence of altitude and salinity on bacterioplankton community composition (BCC) in 16 high-mountain lakes located at altitudes of 2,817 to 5,134 m on the Eastern Qinghai-Xizang (Tibetan) Plateau, China, spanning a salinity gradient from 0.02% (freshwater) to 22.3% (hypersaline), was

Sub-surface microstructure of single and polycrystalline tungsten after high flux plasma exposure studied by TEM

Energy Technology Data Exchange (ETDEWEB)

Dubinko, A., E-mail: adubinko@sckcen.be [Institute for Nuclear Material Sciences, SCK-CEN, 2400 Mol (Belgium); Department of Applied Physics, Ghent University, 9000 Ghent (Belgium); Terentyev, D. [Institute for Nuclear Material Sciences, SCK-CEN, 2400 Mol (Belgium); Bakaeva, A. [Institute for Nuclear Material Sciences, SCK-CEN, 2400 Mol (Belgium); Department of Applied Physics, Ghent University, 9000 Ghent (Belgium); Hernández-Mayoral, M. [Division of Materials, CIEMAT, 28040 Madrid (Spain); De Temmerman, G. [ITER Organization, Route de Vinon-sur-Verdon, CS 90 046, 13067 St Paul-lez-Durance Cedex (France); Buzi, L. [Forschungszentrum Julich, Inst. Energie & Klimaforsch Plasmaphys, D-52425 Julich (Germany); Noterdaeme, J.-M. [Department of Applied Physics, Ghent University, 9000 Ghent (Belgium); Unterberg, B. [Forschungszentrum Julich, Inst. Energie & Klimaforsch Plasmaphys, D-52425 Julich (Germany)

2017-01-30

Highlights: • Plasma exposure induces dislocation-dominated microstructure as indicated by TEM. • Plasma exposure increases surface dislocation density by an order of magnitude in the polycrystalline tungsten. • Intensive dislocation-grain boundary interaction observed in polycrystalline tungsten. • Dislocation loops are observed in both polycrystalline and single crystal tungsten. - Abstract: We have performed high flux plasma exposure of tungsten and subsequent microstructural characterization using transmission electron microscopy (TEM) techniques. The aim was to reveal the nanometric features in the sub-surface region as well as to compare the microstructural evolution in tungsten single crystal and ITER-relevant specification. In both types of samples, TEM examination revealed the formation of a dense dislocation network and dislocation tangles. The estimated dislocation density in the sub-surface region was of the order of 10{sup 14} m{sup −2} and it gradually decreased with a depth position of the examined sample. Besides individual dislocation lines, networks and tangles, the interstitial dislocation loops have been observed in all examined samples only after the exposure. Contrary to that, examination of the pristine single crystal W and backside of the plasma-exposed samples did not reveal the presence of dislocation loops and tangles. This clearly proves that high flux plasma exposure induces severe plastic deformation in the sub-surface region irrespective of the presence of initial dislocations and sub-grains, and the formation of dislocation tangles, networks and interstitial loops is a co-product of thermal stress and intensive plasma particles uptake.