WorldWideScience

Sample records for high-density tiling microarrays

  1. A pilot study of transcription unit analysis in rice using oligonucleotide tiling-path microarray

    DEFF Research Database (Denmark)

    Stolc, Viktor; Li, Lei; Wang, Xiangfeng

    2005-01-01

    As the international efforts to sequence the rice genome are completed, an immediate challenge and opportunity is to comprehensively and accurately define all transcription units in the rice genome. Here we describe a strategy of using high-density oligonucleotide tiling-path microarrays to map...... transcription of the japonica rice genome. In a pilot experiment to test this approach, one array representing the reverse strand of the last 11.2 Mb sequence of chromosome 10 was analyzed in detail based on a mathematical model developed in this study. Analysis of the array data detected 77% of the reference...... gene models in a mixture of four RNA populations. Moreover, significant transcriptional activities were found in many of the previously annotated intergenic regions. These preliminary results demonstrate the utility of genome tiling microarrays in evaluating annotated rice gene models...

  2. Genome-wide transcription analyses in rice using tiling microarrays

    DEFF Research Database (Denmark)

    Li, Lei; Wang, Xiangfeng; Stolc, Viktor

    2006-01-01

    . We report here a full-genome transcription analysis of the indica rice subspecies using high-density oligonucleotide tiling microarrays. Our results provided expression data support for the existence of 35,970 (81.9%) annotated gene models and identified 5,464 unique transcribed intergenic regions...... that share similar compositional properties with the annotated exons and have significant homology to other plant proteins. Elucidating and mapping of all transcribed regions revealed an association between global transcription and cytological chromosome features, and an overall similarity of transcriptional......Sequencing and computational annotation revealed several features, including high gene numbers, unusual composition of the predicted genes and a large number of genes lacking homology to known genes, that distinguish the rice (Oryza sativa) genome from that of other fully sequenced model species...

  3. An efficient pseudomedian filter for tiling microrrays.

    Science.gov (United States)

    Royce, Thomas E; Carriero, Nicholas J; Gerstein, Mark B

    2007-06-07

    Tiling microarrays are becoming an essential technology in the functional genomics toolbox. They have been applied to the tasks of novel transcript identification, elucidation of transcription factor binding sites, detection of methylated DNA and several other applications in several model organisms. These experiments are being conducted at increasingly finer resolutions as the microarray technology enjoys increasingly greater feature densities. The increased densities naturally lead to increased data analysis requirements. Specifically, the most widely employed algorithm for tiling array analysis involves smoothing observed signals by computing pseudomedians within sliding windows, a O(n2logn) calculation in each window. This poor time complexity is an issue for tiling array analysis and could prove to be a real bottleneck as tiling microarray experiments become grander in scope and finer in resolution. We therefore implemented Monahan's HLQEST algorithm that reduces the runtime complexity for computing the pseudomedian of n numbers to O(nlogn) from O(n2logn). For a representative tiling microarray dataset, this modification reduced the smoothing procedure's runtime by nearly 90%. We then leveraged the fact that elements within sliding windows remain largely unchanged in overlapping windows (as one slides across genomic space) to further reduce computation by an additional 43%. This was achieved by the application of skip lists to maintaining a sorted list of values from window to window. This sorted list could be maintained with simple O(log n) inserts and deletes. We illustrate the favorable scaling properties of our algorithms with both time complexity analysis and benchmarking on synthetic datasets. Tiling microarray analyses that rely upon a sliding window pseudomedian calculation can require many hours of computation. We have eased this requirement significantly by implementing efficient algorithms that scale well with genomic feature density. This result

  4. An efficient pseudomedian filter for tiling microrrays

    Directory of Open Access Journals (Sweden)

    Gerstein Mark B

    2007-06-01

    Full Text Available Abstract Background Tiling microarrays are becoming an essential technology in the functional genomics toolbox. They have been applied to the tasks of novel transcript identification, elucidation of transcription factor binding sites, detection of methylated DNA and several other applications in several model organisms. These experiments are being conducted at increasingly finer resolutions as the microarray technology enjoys increasingly greater feature densities. The increased densities naturally lead to increased data analysis requirements. Specifically, the most widely employed algorithm for tiling array analysis involves smoothing observed signals by computing pseudomedians within sliding windows, a O(n2logn calculation in each window. This poor time complexity is an issue for tiling array analysis and could prove to be a real bottleneck as tiling microarray experiments become grander in scope and finer in resolution. Results We therefore implemented Monahan's HLQEST algorithm that reduces the runtime complexity for computing the pseudomedian of n numbers to O(nlogn from O(n2logn. For a representative tiling microarray dataset, this modification reduced the smoothing procedure's runtime by nearly 90%. We then leveraged the fact that elements within sliding windows remain largely unchanged in overlapping windows (as one slides across genomic space to further reduce computation by an additional 43%. This was achieved by the application of skip lists to maintaining a sorted list of values from window to window. This sorted list could be maintained with simple O(log n inserts and deletes. We illustrate the favorable scaling properties of our algorithms with both time complexity analysis and benchmarking on synthetic datasets. Conclusion Tiling microarray analyses that rely upon a sliding window pseudomedian calculation can require many hours of computation. We have eased this requirement significantly by implementing efficient algorithms that

  5. A tiling microarray for global analysis of chloroplast genome expression in cucumber and other plants

    Directory of Open Access Journals (Sweden)

    Pląder Wojciech

    2011-09-01

    Full Text Available Abstract Plastids are small organelles equipped with their own genomes (plastomes. Although these organelles are involved in numerous plant metabolic pathways, current knowledge about the transcriptional activity of plastomes is limited. To solve this problem, we constructed a plastid tiling microarray (PlasTi-microarray consisting of 1629 oligonucleotide probes. The oligonucleotides were designed based on the cucumber chloroplast genomic sequence and targeted both strands of the plastome in a non-contiguous arrangement. Up to 4 specific probes were designed for each gene/exon, and the intergenic regions were covered regularly, with 70-nt intervals. We also developed a protocol for direct chemical labeling and hybridization of as little as 2 micrograms of chloroplast RNA. We used this protocol for profiling the expression of the cucumber chloroplast plastome on the PlasTi-microarray. Owing to the high sequence similarity of plant plastomes, the newly constructed microarray can be used to study plants other than cucumber. Comparative hybridization of chloroplast transcriptomes from cucumber, Arabidopsis, tomato and spinach showed that the PlasTi-microarray is highly versatile.

  6. An efficient pseudomedian filter for tiling microrrays

    OpenAIRE

    Royce, Thomas E; Carriero, Nicholas J; Gerstein, Mark B

    2007-01-01

    Abstract Background Tiling microarrays are becoming an essential technology in the functional genomics toolbox. They have been applied to the tasks of novel transcript identification, elucidation of transcription factor binding sites, detection of methylated DNA and several other applications in several model organisms. These experiments are being conducted at increasingly finer resolutions as the microarray technology enjoys increasingly greater feature densities. The increased densities nat...

  7. High-accuracy measurement and compensation of grating line-density error in a tiled-grating compressor

    Science.gov (United States)

    Zhao, Dan; Wang, Xiao; Mu, Jie; Li, Zhilin; Zuo, Yanlei; Zhou, Song; Zhou, Kainan; Zeng, Xiaoming; Su, Jingqin; Zhu, Qihua

    2017-02-01

    The grating tiling technology is one of the most effective means to increase the aperture of the gratings. The line-density error (LDE) between sub-gratings will degrade the performance of the tiling gratings, high accuracy measurement and compensation of the LDE are of significance to improve the output pulses characteristics of the tiled-grating compressor. In this paper, the influence of LDE on the output pulses of the tiled-grating compressor is quantitatively analyzed by means of numerical simulation, the output beams drift and output pulses broadening resulting from the LDE are presented. Based on the numerical results we propose a compensation method to reduce the degradations of the tiled grating compressor by applying angular tilt error and longitudinal piston error at the same time. Moreover, a monitoring system is setup to measure the LDE between sub-gratings accurately and the dispersion variation due to the LDE is also demonstrated based on spatial-spectral interference. In this way, we can realize high-accuracy measurement and compensation of the LDE, and this would provide an efficient way to guide the adjustment of the tiling gratings.

  8. High-density polymer microarrays: identifying synthetic polymers that control human embryonic stem cell growth.

    Science.gov (United States)

    Hansen, Anne; Mjoseng, Heidi K; Zhang, Rong; Kalloudis, Michail; Koutsos, Vasileios; de Sousa, Paul A; Bradley, Mark

    2014-06-01

    The fabrication of high-density polymer microarray is described, allowing the simultaneous and efficient evaluation of more than 7000 different polymers in a single-cellular-based screen. These high-density polymer arrays are applied in the search for synthetic substrates for hESCs culture. Up-scaling of the identified hit polymers enables long-term cellular cultivation and promoted successful stem-cell maintenance. © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  9. Utility of the pooling approach as applied to whole genome association scans with high-density Affymetrix microarrays

    Directory of Open Access Journals (Sweden)

    Gray Joanna

    2010-11-01

    Full Text Available Abstract Background We report an attempt to extend the previously successful approach of combining SNP (single nucleotide polymorphism microarrays and DNA pooling (SNP-MaP employing high-density microarrays. Whereas earlier studies employed a range of Affymetrix SNP microarrays comprising from 10 K to 500 K SNPs, this most recent investigation used the 6.0 chip which displays 906,600 SNP probes and 946,000 probes for the interrogation of CNVs (copy number variations. The genotyping assay using the Affymetrix SNP 6.0 array is highly demanding on sample quality due to the small feature size, low redundancy, and lack of mismatch probes. Findings In the first study published so far using this microarray on pooled DNA, we found that pooled cheek swab DNA could not accurately predict real allele frequencies of the samples that comprised the pools. In contrast, the allele frequency estimates using blood DNA pools were reasonable, although inferior compared to those obtained with previously employed Affymetrix microarrays. However, it might be possible to improve performance by developing improved analysis methods. Conclusions Despite the decreasing costs of genome-wide individual genotyping, the pooling approach may have applications in very large-scale case-control association studies. In such cases, our study suggests that high-quality DNA preparations and lower density platforms should be preferred.

  10. Teolenn: an efficient and customizable workflow to design high-quality probes for microarray experiments

    Science.gov (United States)

    Jourdren, Laurent; Duclos, Aurélie; Brion, Christian; Portnoy, Thomas; Mathis, Hugues; Margeot, Antoine; Le Crom, Stéphane

    2010-01-01

    Despite the development of new high-throughput sequencing techniques, microarrays are still attractive tools to study small genome organisms, thanks to sample multiplexing and high-feature densities. However, the oligonucleotide design remains a delicate step for most users. A vast array of software is available to deal with this problem, but each program is developed with its own strategy, which makes the choice of the best solution difficult. Here we describe Teolenn, a universal probe design workflow developed with a flexible and customizable module organization allowing fixed or variable length oligonucleotide generation. In addition, our software is able to supply quality scores for each of the designed probes. In order to assess the relevance of these scores, we performed a real hybridization using a tiling array designed against the Trichoderma reesei fungus genome. We show that our scoring pipeline correlates with signal quality for 97.2% of all the designed probes, allowing for a posteriori comparisons between quality scores and signal intensities. This result is useful in discarding any bad scoring probes during the design step in order to get high-quality microarrays. Teolenn is available at http://transcriptome.ens.fr/teolenn/. PMID:20176570

  11. A cell spot microarray method for production of high density siRNA transfection microarrays

    Directory of Open Access Journals (Sweden)

    Mpindi John-Patrick

    2011-03-01

    Full Text Available Abstract Background High-throughput RNAi screening is widely applied in biological research, but remains expensive, infrastructure-intensive and conversion of many assays to HTS applications in microplate format is not feasible. Results Here, we describe the optimization of a miniaturized cell spot microarray (CSMA method, which facilitates utilization of the transfection microarray technique for disparate RNAi analyses. To promote rapid adaptation of the method, the concept has been tested with a panel of 92 adherent cell types, including primary human cells. We demonstrate the method in the systematic screening of 492 GPCR coding genes for impact on growth and survival of cultured human prostate cancer cells. Conclusions The CSMA method facilitates reproducible preparation of highly parallel cell microarrays for large-scale gene knockdown analyses. This will be critical towards expanding the cell based functional genetic screens to include more RNAi constructs, allow combinatorial RNAi analyses, multi-parametric phenotypic readouts or comparative analysis of many different cell types.

  12. Laser ultrasonics for bulk-density distribution measurement on green ceramic tiles

    Science.gov (United States)

    Revel, G. M.; Cavuto, A.; Pandarese, G.

    2016-10-01

    In this paper a Laser Ultrasonics (LUT) system is developed and applied to measure bulk density distribution of green ceramic tiles, which are porous materials with low heat conductivity. Bulk density of green ceramic bodies is a fundamental parameter to be kept under control in the industrial production of ceramic tiles. The LUT system proposed is based on a Nd:YAG pulsed laser for excitation and an air-coupled electro-capacitive transducer for detection. The paper reports experimental apparent bulk-density measurements on white ceramic bodies after a calibration procedures. The performances observed are better than those previously achieved by authors using air-coupled ultrasonic probes for both emission and detection, allowing to reduce average uncertainty down to about ±6 kg/m3 (±0.3%), thanks to the increase in excitation efficiency and lateral resolution, while maintaining potential flexibility for on-line application. The laser ultrasonic procedure proposed is available for both on-line and off-line application. In this last case it is possible to obtain bulk density maps with high spatial resolution by a 2D scan without interrupting the production process.

  13. High-resolution mapping of linear antibody epitopes using ultrahigh-density peptide microarrays

    DEFF Research Database (Denmark)

    Buus, Søren; Rockberg, Johan; Forsström, Björn

    2012-01-01

    Antibodies empower numerous important scientific, clinical, diagnostic, and industrial applications. Ideally, the epitope(s) targeted by an antibody should be identified and characterized, thereby establishing antibody reactivity, highlighting possible cross-reactivities, and perhaps even warning...... against unwanted (e.g. autoimmune) reactivities. Antibodies target proteins as either conformational or linear epitopes. The latter are typically probed with peptides, but the cost of peptide screening programs tends to prohibit comprehensive specificity analysis. To perform high-throughput, high......-resolution mapping of linear antibody epitopes, we have used ultrahigh-density peptide microarrays generating several hundred thousand different peptides per array. Using exhaustive length and substitution analysis, we have successfully examined the specificity of a panel of polyclonal antibodies raised against...

  14. Mismatch oligonucleotides in human and yeast: guidelines for probe design on tiling microarrays

    Directory of Open Access Journals (Sweden)

    Jee Justin

    2008-12-01

    Full Text Available Abstract Background Mismatched oligonucleotides are widely used on microarrays to differentiate specific from nonspecific hybridization. While many experiments rely on such oligos, the hybridization behavior of various degrees of mismatch (MM structure has not been extensively studied. Here, we present the results of two large-scale microarray experiments on S. cerevisiae and H. sapiens genomic DNA, to explore MM oligonucleotide behavior with real sample mixtures under tiling-array conditions. Results We examined all possible nucleotide substitutions at the central position of 36-nucleotide probes, and found that nonspecific binding by MM oligos depends upon the individual nucleotide substitutions they incorporate: C→A, C→G and T→A (yielding purine-purine mispairs are most disruptive, whereas A→X were least disruptive. We also quantify a marked GC skew effect: substitutions raising probe GC content exhibit higher intensity (and vice versa. This skew is small in highly-expressed regions (± 0.5% of total intensity range and large (± 2% or more elsewhere. Multiple mismatches per oligo are largely additive in effect: each MM added in a distributed fashion causes an additional 21% intensity drop relative to PM, three-fold more disruptive than adding adjacent mispairs (7% drop per MM. Conclusion We investigate several parameters for oligonucleotide design, including the effects of each central nucleotide substitution on array signal intensity and of multiple MM per oligo. To avoid GC skew, individual substitutions should not alter probe GC content. RNA sample mixture complexity may increase the amount of nonspecific hybridization, magnify GC skew and boost the intensity of MM oligos at all levels.

  15. Tile Drainage Density Reduces Groundwater Travel Times and Compromises Riparian Buffer Effectiveness.

    Science.gov (United States)

    Schilling, Keith E; Wolter, Calvin F; Isenhart, Thomas M; Schultz, Richard C

    2015-11-01

    Strategies to reduce nitrate-nitrogen (nitrate) pollution delivered to streams often seek to increase groundwater residence time to achieve measureable results, yet the effects of tile drainage on residence time have not been well documented. In this study, we used a geographic information system groundwater travel time model to quantify the effects of artificial subsurface drainage on groundwater travel times in the 7443-ha Bear Creek watershed in north-central Iowa. Our objectives were to evaluate how mean groundwater travel times changed with increasing drainage intensity and to assess how tile drainage density reduces groundwater contributions to riparian buffers. Results indicate that mean groundwater travel times are reduced with increasing degrees of tile drainage. Mean groundwater travel times decreased from 5.6 to 1.1 yr, with drainage densities ranging from 0.005 m (7.6 mi) to 0.04 m (62 mi), respectively. Model simulations indicate that mean travel times with tile drainage are more than 150 times faster than those that existed before settlement. With intensive drainage, less than 2% of the groundwater in the basin appears to flow through a perennial stream buffer, thereby reducing the effectiveness of this practice to reduce stream nitrate loads. Hence, strategies, such as reconnecting tile drainage to buffers, are promising because they increase groundwater residence times in tile-drained watersheds. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

  16. Genomotyping of Pseudomonas putida strains using P. putida KT2440-based high-density DNA microarrays: Implications for transcriptomics studies

    NARCIS (Netherlands)

    Ballerstedt, H.; Volkers, R.J.M.; Mars, A.E.; Hallsworth, J.E.; Santos, V.A.M.D.; Puchalka, J.; Duuren, J. van; Eggink, G.; Timmis, K.N.; Bont, J.A.M. de; Wery, J.

    2007-01-01

    Pseudomonas putida KT2440 is the only fully sequenced P. putida strain. Thus, for transcriptomics and proteomics studies with other P. putida strains, the P. putida KT2440 genomic database serves as standard reference. The utility of KT2440 whole-genome, high-density oligonucleotide microarrays for

  17. Incorporation of gene-specific variability improves expression analysis using high-density DNA microarrays

    Directory of Open Access Journals (Sweden)

    Spitznagel Edward

    2003-11-01

    Full Text Available Abstract Background The assessment of data reproducibility is essential for application of microarray technology to exploration of biological pathways and disease states. Technical variability in data analysis largely depends on signal intensity. Within that context, the reproducibility of individual probe sets has not been hitherto addressed. Results We used an extraordinarily large replicate data set derived from human placental trophoblast to analyze probe-specific contribution to variability of gene expression. We found that signal variability, in addition to being signal-intensity dependant, is probe set-specific. Importantly, we developed a novel method to quantify the contribution of this probe set-specific variability. Furthermore, we devised a formula that incorporates a priori-computed, replicate-based information on probe set- and intensity-specific variability in determination of expression changes even without technical replicates. Conclusion The strategy of incorporating probe set-specific variability is superior to analysis based on arbitrary fold-change thresholds. We recommend its incorporation to any computation of gene expression changes using high-density DNA microarrays. A Java application implementing our T-score is available at http://www.sadovsky.wustl.edu/tscore.html.

  18. Development and evaluation of a high-throughput, low-cost genotyping platform based on oligonucleotide microarrays in rice

    Directory of Open Access Journals (Sweden)

    Liu Bin

    2008-05-01

    Full Text Available Abstract Background We report the development of a microarray platform for rapid and cost-effective genetic mapping, and its evaluation using rice as a model. In contrast to methods employing whole-genome tiling microarrays for genotyping, our method is based on low-cost spotted microarray production, focusing only on known polymorphic features. Results We have produced a genotyping microarray for rice, comprising 880 single feature polymorphism (SFP elements derived from insertions/deletions identified by aligning genomic sequences of the japonica cultivar Nipponbare and the indica cultivar 93-11. The SFPs were experimentally verified by hybridization with labeled genomic DNA prepared from the two cultivars. Using the genotyping microarrays, we found high levels of polymorphism across diverse rice accessions, and were able to classify all five subpopulations of rice with high bootstrap support. The microarrays were used for mapping of a gene conferring resistance to Magnaporthe grisea, the causative organism of rice blast disease, by quantitative genotyping of samples from a recombinant inbred line population pooled by phenotype. Conclusion We anticipate this microarray-based genotyping platform, based on its low cost-per-sample, to be particularly useful in applications requiring whole-genome molecular marker coverage across large numbers of individuals.

  19. High-performance and anti-stain coating for porcelain stoneware tiles based on nanostructured zirconium compounds.

    Science.gov (United States)

    Ambrosi, Moira; Santoni, Sergio; Giorgi, Rodorico; Fratini, Emiliano; Toccafondi, Nicola; Baglioni, Piero

    2014-10-15

    The technological characteristics of porcelain stoneware tiles make them suitable for a wide range of applications spanning far beyond traditional uses. Due to the high density, porcelain stoneware tiles show high bending strength, wear resistance, surface hardness, and high fracture toughness. Nevertheless, despite being usually claimed as stain resistant, the surface porosity renders porcelain stoneware tiles vulnerable to dirt penetration with the formation of stains that can be very difficult to remove. In the present work, we report an innovative and versatile method to realize stain resistant porcelain stoneware tiles. The tile surface is treated by mixtures of nanosized zirconium hydroxide and nano- and micron-sized glass frits that thanks to the low particle dimension are able to penetrate inside the surface pores. The firing step leads to the formation of a glass matrix that can partially or totally close the surface porosity. As a result, the fired tiles become permanently stain resistant still preserving the original esthetical qualities of the original material. Treated tiles also show a remarkably enhanced hardness due to the inclusion of zirconium compounds in the glass coating. Copyright © 2014 Elsevier Inc. All rights reserved.

  20. Efficient oligonucleotide probe selection for pan-genomic tiling arrays

    Directory of Open Access Journals (Sweden)

    Zhang Wei

    2009-09-01

    Full Text Available Abstract Background Array comparative genomic hybridization is a fast and cost-effective method for detecting, genotyping, and comparing the genomic sequence of unknown bacterial isolates. This method, as with all microarray applications, requires adequate coverage of probes targeting the regions of interest. An unbiased tiling of probes across the entire length of the genome is the most flexible design approach. However, such a whole-genome tiling requires that the genome sequence is known in advance. For the accurate analysis of uncharacterized bacteria, an array must query a fully representative set of sequences from the species' pan-genome. Prior microarrays have included only a single strain per array or the conserved sequences of gene families. These arrays omit potentially important genes and sequence variants from the pan-genome. Results This paper presents a new probe selection algorithm (PanArray that can tile multiple whole genomes using a minimal number of probes. Unlike arrays built on clustered gene families, PanArray uses an unbiased, probe-centric approach that does not rely on annotations, gene clustering, or multi-alignments. Instead, probes are evenly tiled across all sequences of the pan-genome at a consistent level of coverage. To minimize the required number of probes, probes conserved across multiple strains in the pan-genome are selected first, and additional probes are used only where necessary to span polymorphic regions of the genome. The viability of the algorithm is demonstrated by array designs for seven different bacterial pan-genomes and, in particular, the design of a 385,000 probe array that fully tiles the genomes of 20 different Listeria monocytogenes strains with overlapping probes at greater than twofold coverage. Conclusion PanArray is an oligonucleotide probe selection algorithm for tiling multiple genome sequences using a minimal number of probes. It is capable of fully tiling all genomes of a species on

  1. High-throughput immuno-profiling of mamba (Dendroaspis) venom toxin epitopes using high-density peptide microarrays

    DEFF Research Database (Denmark)

    Engmark, Mikael; Andersen, Mikael Rørdam; Laustsen, Andreas Hougaard

    2016-01-01

    Snakebite envenoming is a serious condition requiring medical attention and administration of antivenom. Current antivenoms are antibody preparations obtained from the plasma of animals immunised with whole venom(s) and contain antibodies against snake venom toxins, but also against other antigens....... In order to better understand the molecular interactions between antivenom antibodies and epitopes on snake venom toxins, a high-throughput immuno-profiling study on all manually curated toxins from Dendroaspis species and selected African Naja species was performed based on custom-made high......-density peptide microarrays displaying linear toxin fragments. By detection of binding for three different antivenoms and performing an alanine scan, linear elements of epitopes and the positions important for binding were identified. A strong tendency of antivenom antibodies recognizing and binding to epitopes...

  2. A high-density transcript linkage map with 1,845 expressed genes positioned by microarray-based Single Feature Polymorphisms (SFP) in Eucalyptus

    Science.gov (United States)

    2011-01-01

    Background Technological advances are progressively increasing the application of genomics to a wider array of economically and ecologically important species. High-density maps enriched for transcribed genes facilitate the discovery of connections between genes and phenotypes. We report the construction of a high-density linkage map of expressed genes for the heterozygous genome of Eucalyptus using Single Feature Polymorphism (SFP) markers. Results SFP discovery and mapping was achieved using pseudo-testcross screening and selective mapping to simultaneously optimize linkage mapping and microarray costs. SFP genotyping was carried out by hybridizing complementary RNA prepared from 4.5 year-old trees xylem to an SFP array containing 103,000 25-mer oligonucleotide probes representing 20,726 unigenes derived from a modest size expressed sequence tags collection. An SFP-mapping microarray with 43,777 selected candidate SFP probes representing 15,698 genes was subsequently designed and used to genotype SFPs in a larger subset of the segregating population drawn by selective mapping. A total of 1,845 genes were mapped, with 884 of them ordered with high likelihood support on a framework map anchored to 180 microsatellites with average density of 1.2 cM. Using more probes per unigene increased by two-fold the likelihood of detecting segregating SFPs eventually resulting in more genes mapped. In silico validation showed that 87% of the SFPs map to the expected location on the 4.5X draft sequence of the Eucalyptus grandis genome. Conclusions The Eucalyptus 1,845 gene map is the most highly enriched map for transcriptional information for any forest tree species to date. It represents a major improvement on the number of genes previously positioned on Eucalyptus maps and provides an initial glimpse at the gene space for this global tree genome. A general protocol is proposed to build high-density transcript linkage maps in less characterized plant species by SFP genotyping

  3. A novel method to quantify local CpG methylation density by regional methylation elongation assay on microarray

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    Qiao Yingjuan

    2008-01-01

    Full Text Available Abstract Background DNA methylation based techniques are important tools in both clinical diagnostics and therapeutics. But most of these methods only analyze a few CpG sites in a target region. Indeed, difference of site-specific methylation may also lead to a change of methylation density in many cases, and it has been found that the density of methylation is more important than methylation of single CpG site for gene silencing. Results We have developed a novel approach for quantitative analysis of CpG methylation density on the basis of microarray-based hybridization and incorporation of Cy5-dCTP into the Cy3 labeled target DNA by using Taq DNA Polymerase on microarray. The quantification is achieved by measuring Cy5/Cy3 signal ratio which is proportional to methylation density. This methylation-sensitive technique, termed RMEAM (regional methylation elongation assay on microarray, provides several advantages over existing methods used for methylation analysis. It can determine an exact methylation density of the given region, and has potential of high throughput. We demonstrate a use of this method in determining the methylation density of the promoter region of the tumor-related gene MLH1, TERT and MGMT in colorectal carcinoma patients. Conclusion This technique allows for quantitative analysis of regional methylation density, which is the representative of all allelic methylation patterns in the sample. The results show that this technique has the characteristics of simplicity, rapidness, specificity and high-throughput.

  4. Study of the pressing operation of large-sized tiles using X-ray absorption

    International Nuclear Information System (INIS)

    Amoros, J. L.; Mallol, G.; Llorens, D.; Boix, J.; Arnau, J. M.; Feliu, C.; Cerisuelo, J. A.; Gargallo, J. J.

    2010-01-01

    An apparatus for X-Ray non destructive inspection of bulk density distribution in large ceramic tiles has been designed, built and patented. This technique has many advantages compared with other methods: it allows tile bulk density distribution to be mapped and is neither destructive nor toxic, provided the X-ray tube and detector area are shielded to prevent leakage. In the present study, this technique, whose technical feasibility and accuracy had been verified in previous studies, has been used to scan ceramic tiles formed under different industrial conditions, modifying press working parameters. The use of high-precision laser telemeters allows tile thicknesses to be mapped, facilitating the interpretation of manufacturing defects produced in pressing, which cannot be interpreted by just measuring bulk density. The bulk density distributions obtained in the same unfired and fired tiles are also compared, a possibility afforded only by this measurement method, since it is non-destructive. The comparison of both unfired and fired tile bulk density distributions allows the influence of the pressing and firing stages on tile end porosity to be individually identified. (Author) 12 refs.

  5. A portable high-power diode laser-based single-stage ceramic tile grout sealing system

    Science.gov (United States)

    Lawrence, J.; Schmidt, M. J. J.; Li, L.; Edwards, R. E.; Gale, A. W.

    2002-02-01

    By means of a 60 W high-power diode laser (HPDL) and a specially developed grout material the void between adjoining ceramic tiles has been successfully sealed. A single-stage process has been developed which uses a crushed ceramic tile mix to act as a tough, inexpensive bulk substrate and a glazed enamel surface to provide an impervious surface glaze. The single-stage ceramic tile grout sealing process yielded seals produced in normal atmospheric conditions that displayed no discernible cracks and porosities. The single-stage grout is simple to formulate and easy to apply. Tiles were successfully sealed with power densities as low as 200 kW/ mm2 and at rates of up to 600 mm/ min. Bonding of the enamel to the crushed ceramic tile mix was identified as being primarily due to van der Waals forces and, on a very small scale, some of the crushed ceramic tile mix material dissolving into the glaze. In terms of mechanical, physical and chemical characteristics, the single-stage ceramic tile grout was found to be far superior to the conventional epoxy tile grout and, in many instances, matched and occasionally surpassed that of the ceramic tiles themselves. What is more, the development of a hand-held HPDL beam delivery unit and the related procedures necessary to lead to the commercialisation of the single-stage ceramic tile grout sealing process are presented. Further, an appraisal of the potential hazards associated with the use of the HPDL in an industrial environment and the solutions implemented to ensure that the system complies with the relevant safety standards are given.

  6. Printing Proteins as Microarrays for High-Throughput Function Determination

    Science.gov (United States)

    MacBeath, Gavin; Schreiber, Stuart L.

    2000-09-01

    Systematic efforts are currently under way to construct defined sets of cloned genes for high-throughput expression and purification of recombinant proteins. To facilitate subsequent studies of protein function, we have developed miniaturized assays that accommodate extremely low sample volumes and enable the rapid, simultaneous processing of thousands of proteins. A high-precision robot designed to manufacture complementary DNA microarrays was used to spot proteins onto chemically derivatized glass slides at extremely high spatial densities. The proteins attached covalently to the slide surface yet retained their ability to interact specifically with other proteins, or with small molecules, in solution. Three applications for protein microarrays were demonstrated: screening for protein-protein interactions, identifying the substrates of protein kinases, and identifying the protein targets of small molecules.

  7. Towards High-throughput Immunomics for Infectious Diseases: Use of Next-generation Peptide Microarrays for Rapid Discovery and Mapping of Antigenic Determinants

    DEFF Research Database (Denmark)

    J. Carmona, Santiago; Nielsen, Morten; Schafer-Nielsen, Claus

    2015-01-01

    , we developed a highly-multiplexed platform based on next-generation high-density peptide microarrays to map these specificities in Chagas Disease, an exemplar of a human infectious disease caused by the protozoan Trypanosoma cruzi. We designed a high-density peptide microarray containing more than...

  8. Cross-recognition of a pit viper (Crotalinae) polyspecific antivenom explored through high-density peptide microarray epitope mapping

    DEFF Research Database (Denmark)

    Engmark, Mikael; Lomonte, Bruno; Gutiérrez, José María

    2017-01-01

    Snakebite antivenom is a 120 years old invention based on polyclonal mixtures of antibodies purified from the blood of hyper-immunized animals. Knowledge on antibody recognition sites (epitopes) on snake venom proteins is limited, but may be used to provide molecular level explanations...... for antivenom cross-reactivity. In turn, this may help guide antivenom development by elucidating immunological biases in existing antivenoms. In this study, we have identified and characterized linear elements of B-cell epitopes from 870 pit viper venom protein sequences by employing a high......-throughput methodology based on custom designed high-density peptide microarrays. By combining data on antibody-peptide interactions with multiple sequence alignments of homologous toxin sequences and protein modelling, we have determined linear elements of antibody binding sites for snake venom metalloproteases (SVMPs...

  9. The role of group index engineering in series-connected photonic crystal microcavities for high density sensor microarrays

    International Nuclear Information System (INIS)

    Zou, Yi; Zhu, Liang; Chen, Ray T.; Chakravarty, Swapnajit

    2014-01-01

    We experimentally demonstrate an efficient and robust method for series connection of photonic crystal microcavities that are coupled to photonic crystal waveguides in the slow light transmission regime. We demonstrate that group index taper engineering provides excellent optical impedance matching between the input and output strip waveguides and the photonic crystal waveguide, a nearly flat transmission over the entire guided mode spectrum and clear multi-resonance peaks corresponding to individual microcavities that are connected in series. Series connected photonic crystal microcavities are further multiplexed in parallel using cascaded multimode interference power splitters to generate a high density silicon nanophotonic microarray comprising 64 photonic crystal microcavity sensors, all of which are interrogated simultaneously at the same instant of time

  10. The role of group index engineering in series-connected photonic crystal microcavities for high density sensor microarrays

    Energy Technology Data Exchange (ETDEWEB)

    Zou, Yi, E-mail: yzou@utexas.edu; Zhu, Liang; Chen, Ray T., E-mail: raychen@uts.cc.utexas.edu [Department of Electrical and Computer Engineering, Microelectronics Research Center, University of Texas at Austin, 10100 Burnet Rd., Austin, Texas 78758 (United States); Chakravarty, Swapnajit, E-mail: swapnajit.chakravarty@omegaoptics.com [Omega Optics, Inc., 8500 Shoal Creek Blvd., Austin, Texas 78757 (United States)

    2014-04-07

    We experimentally demonstrate an efficient and robust method for series connection of photonic crystal microcavities that are coupled to photonic crystal waveguides in the slow light transmission regime. We demonstrate that group index taper engineering provides excellent optical impedance matching between the input and output strip waveguides and the photonic crystal waveguide, a nearly flat transmission over the entire guided mode spectrum and clear multi-resonance peaks corresponding to individual microcavities that are connected in series. Series connected photonic crystal microcavities are further multiplexed in parallel using cascaded multimode interference power splitters to generate a high density silicon nanophotonic microarray comprising 64 photonic crystal microcavity sensors, all of which are interrogated simultaneously at the same instant of time.

  11. High-Performance Tiled WMS and KML Web Server

    Science.gov (United States)

    Plesea, Lucian

    2007-01-01

    This software is an Apache 2.0 module implementing a high-performance map server to support interactive map viewers and virtual planet client software. It can be used in applications that require access to very-high-resolution geolocated images, such as GIS, virtual planet applications, and flight simulators. It serves Web Map Service (WMS) requests that comply with a given request grid from an existing tile dataset. It also generates the KML super-overlay configuration files required to access the WMS image tiles.

  12. High-density rhesus macaque oligonucleotide microarray design using early-stage rhesus genome sequence information and human genome annotations

    Directory of Open Access Journals (Sweden)

    Magness Charles L

    2007-01-01

    Full Text Available Abstract Background Until recently, few genomic reagents specific for non-human primate research have been available. To address this need, we have constructed a macaque-specific high-density oligonucleotide microarray by using highly fragmented low-pass sequence contigs from the rhesus genome project together with the detailed sequence and exon structure of the human genome. Using this method, we designed oligonucleotide probes to over 17,000 distinct rhesus/human gene orthologs and increased by four-fold the number of available genes relative to our first-generation expressed sequence tag (EST-derived array. Results We constructed a database containing 248,000 exon sequences from 23,000 human RefSeq genes and compared each human exon with its best matching sequence in the January 2005 version of the rhesus genome project list of 486,000 DNA contigs. Best matching rhesus exon sequences for each of the 23,000 human genes were then concatenated in the proper order and orientation to produce a rhesus "virtual transcriptome." Microarray probes were designed, one per gene, to the region closest to the 3' untranslated region (UTR of each rhesus virtual transcript. Each probe was compared to a composite rhesus/human transcript database to test for cross-hybridization potential yielding a final probe set representing 18,296 rhesus/human gene orthologs, including transcript variants, and over 17,000 distinct genes. We hybridized mRNA from rhesus brain and spleen to both the EST- and genome-derived microarrays. Besides four-fold greater gene coverage, the genome-derived array also showed greater mean signal intensities for genes present on both arrays. Genome-derived probes showed 99.4% identity when compared to 4,767 rhesus GenBank sequence tag site (STS sequences indicating that early stage low-pass versions of complex genomes are of sufficient quality to yield valuable functional genomic information when combined with finished genome information from

  13. Deposition of deuterium and metals on divertor tiles in the DIII-D tokamak

    International Nuclear Information System (INIS)

    Walsh, D.S.; Doyle, B.L.; Jackson, G.L.

    1991-01-01

    Hydrogen recycling and impurity influx are important issues in obtaining high confinement discharges in the D3-D tokamak. To reduce metallic impurities in D3-D, 40% of the wall area, including the highest heat flux zones, have been covered with graphite tiles. However erosion, redeposition and hydrogen retention in the tiles, as well as metal transport from the remaining Inconel walls can lead to enhanced recycling and impurity influx. Hydrogen and metal retention in divertor floor tiles have been measured using external ion beam analysis techniques following four campaigns where tiles were exposed to several thousand tokamak discharges. The areal density of deuterium retained following exposure to tokamak plasmas was measured with external nuclear reaction analysis. External proton-induced x-ray emission analysis was used to measure the areal densities of metallic impurities deposited upon the divertor tiles either by sputtering of metallic components during discharges or as contamination during tile fabrication. Measurements for both deuterium and metallic impurities were taken on both the tile surfaces which face the operating plasma and the surfaces on the side of the tiles which form the small gaps separating each of the tiles in the divertor. The highest areal densities of both deuterium and metals were found on the plasma-facing surface near the inner strike point region of each set of divertor tiles. Significant deposits, extending as fast a 1 cm from the plasma-facing and containing up to forty percent of the total divertor deposition, were also observed on the gap-forming surfaces of the tiles

  14. Optimization of the JET Beryllium tile profile for power handling

    International Nuclear Information System (INIS)

    Nunes, I.; Vries, P. de; Lomas, P.J.; Loarte, A.

    2006-01-01

    The primary objective of the ITER-like wall project is to install a beryllium main wall and a tungsten divertor. From the point of view of plasma operations, the power handling properties of the new Be tiles may affect the operational space. The tiles design has to be such that it allows routine plasma operation for ITER relevant scenarios, i.e., 3-5 MA ELMy H-modes with high power input (P in > 30 MW) for lengths of time of ∼ 10 s. Due to the constrains imposed by heat conductivity, eddy current and stress torques on a Be tile, a single Be tile must be an assembly of castellated slices [Thompson V. et al, this conference]. From the point of view of plasma operations, the power handling properties of the new Be tiles can restrict the operational space of JET, if considerable melting of the tiles is to be avoided. This paper describes the power handling studies for the beryllium wall tiles and the optimisation of their design to achieve the operation goal described above. The melting temperature for Be is 1289 o C, corresponding to a energy limit of 60 MJ/m 2 for 10 s [Thompson V. et al, this conference]. For low field line angles, the power density on the toroidally facing surfaces is several times higher than the power density on the tile face requiring these to be shadowed. Furthermore the poloidally facing surfaces also have to be shadowed from assembly to assembly due to the large gap between assemblies. The tiles have been designed taking into account these limits and with a geometrical design such as to avoid exposed surfaces at high angles to the magnetic field being melted due to the expected loads. This has been achieved after detailed studies of the power handling of the various limiters and protections, including the effect of the curvature of the flux surfaces, shadowing and tolerance to misalignment. The surface of the tiles is defined such that, when possible, there is an even distribution of power density over the entire tile surface, and that

  15. Deposition of deuterium and metals on divertor tiles in the DIII--D tokamak

    International Nuclear Information System (INIS)

    Walsh, D.S.; Doyle, B.L.; Jackson, G.L.

    1992-01-01

    Hydrogen recycling and impurity influx are important issues in obtaining high confinement discharges in the DIII--D tokamak. To reduce metallic impurities in DIII--D, 40% of the wall area, including the highest heat flux zones, have been covered with graphite tiles. However, erosion, redeposition, and hydrogen retention in the tiles, as well as metal transport from the remaining Inconel walls, can lead to enhanced recycling and impurity influx. Hydrogen and metal retention in divertor floor tiles have been measured using external ion beam analysis techniques following four campaigns where tiles were exposed to several thousand tokamak discharges. The areal density of deuterium retained following exposure to tokamak plasmas was measured with external nuclear reaction analysis. External proton-induced x-ray emission analysis was used to measure the areal densities of metallic impurities deposited upon the divertor tiles either by sputtering of metallic components during discharges or as contamination during tile fabrication. Measurements for both deuterium and metallic impurities were taken on both the tile surfaces which face the operating plasma and the surfaces on the sides of the tiles which form the small gaps separating each of the tiles in the divertor. The highest areal densities of both deuterium (from 2 to 8 x 10 18 atoms/cm 2 ) and metals (from 0.2 to 1 x 10 18 atoms/cm 2 ) were found on the plasma-facing surface near the inner strike point region of each set of divertor tiles. Significant deposits, extending as far as 1 cm from the plasma-facing surface and containing up to 40% of the total divertor deposition, were also observed on the gap-forming surfaces of the tiles

  16. Transcriptome analysis of exosome-compromised human cells using high-density tiling arrays

    DEFF Research Database (Denmark)

    Jensen, Torben Heick

    The extent of RNA degradation in the nucleus has traditionally been underestimated. However, all major RNA species are synthesized, processed and can be degraded in this compartment and consequently an enormous amount of nucleosides are turned over and recycled. The RNA exosome, a multisubunit co......) tiling array that covers discrete regions from different chromosomes to represent a range of gene content and exonic/nonexonic conservation grades of the human genome....

  17. Microintaglio Printing for Soft Lithography-Based in Situ Microarrays

    Directory of Open Access Journals (Sweden)

    Manish Biyani

    2015-07-01

    Full Text Available Advances in lithographic approaches to fabricating bio-microarrays have been extensively explored over the last two decades. However, the need for pattern flexibility, a high density, a high resolution, affordability and on-demand fabrication is promoting the development of unconventional routes for microarray fabrication. This review highlights the development and uses of a new molecular lithography approach, called “microintaglio printing technology”, for large-scale bio-microarray fabrication using a microreactor array (µRA-based chip consisting of uniformly-arranged, femtoliter-size µRA molds. In this method, a single-molecule-amplified DNA microarray pattern is self-assembled onto a µRA mold and subsequently converted into a messenger RNA or protein microarray pattern by simultaneously producing and transferring (immobilizing a messenger RNA or a protein from a µRA mold to a glass surface. Microintaglio printing allows the self-assembly and patterning of in situ-synthesized biomolecules into high-density (kilo-giga-density, ordered arrays on a chip surface with µm-order precision. This holistic aim, which is difficult to achieve using conventional printing and microarray approaches, is expected to revolutionize and reshape proteomics. This review is not written comprehensively, but rather substantively, highlighting the versatility of microintaglio printing for developing a prerequisite platform for microarray technology for the postgenomic era.

  18. High quality protein microarray using in situ protein purification

    Directory of Open Access Journals (Sweden)

    Fleischmann Robert D

    2009-08-01

    Full Text Available Abstract Background In the postgenomic era, high throughput protein expression and protein microarray technologies have progressed markedly permitting screening of therapeutic reagents and discovery of novel protein functions. Hexa-histidine is one of the most commonly used fusion tags for protein expression due to its small size and convenient purification via immobilized metal ion affinity chromatography (IMAC. This purification process has been adapted to the protein microarray format, but the quality of in situ His-tagged protein purification on slides has not been systematically evaluated. We established methods to determine the level of purification of such proteins on metal chelate-modified slide surfaces. Optimized in situ purification of His-tagged recombinant proteins has the potential to become the new gold standard for cost-effective generation of high-quality and high-density protein microarrays. Results Two slide surfaces were examined, chelated Cu2+ slides suspended on a polyethylene glycol (PEG coating and chelated Ni2+ slides immobilized on a support without PEG coating. Using PEG-coated chelated Cu2+ slides, consistently higher purities of recombinant proteins were measured. An optimized wash buffer (PBST composed of 10 mM phosphate buffer, 2.7 mM KCl, 140 mM NaCl and 0.05% Tween 20, pH 7.4, further improved protein purity levels. Using Escherichia coli cell lysates expressing 90 recombinant Streptococcus pneumoniae proteins, 73 proteins were successfully immobilized, and 66 proteins were in situ purified with greater than 90% purity. We identified several antigens among the in situ-purified proteins via assays with anti-S. pneumoniae rabbit antibodies and a human patient antiserum, as a demonstration project of large scale microarray-based immunoproteomics profiling. The methodology is compatible with higher throughput formats of in vivo protein expression, eliminates the need for resin-based purification and circumvents

  19. Upgrade of the ATLAS Tile Calorimeter for the High Luminosity LHC

    CERN Document Server

    Scuri, Fabrizio; The ATLAS collaboration

    2018-01-01

    The Tile Calorimeter (TileCal) is the hadronic calorimeter covering the central region of the ATLAS experiment. TileCal is a sampling calorimeter with steel as absorber and scintillators as active medium. The scintillators are read-out by wavelength shifting fibers coupled to photomultiplier tubes (PMTs). The analogue signals from the PMTs are amplified, shaped, digitized by sampling the signal every 25 ns and stored on detector until a trigger decision is received. The High-Luminosity phase of LHC (HL-LHC) expected to begin in year 2026 requires new electronics to meet the requirements of a 1 MHz trigger, higher ambient radiation, and for better performance under high pileup. Both the on- and off-detector TileCal electronics will be replaced during the shutdown of 2024-2025. PMT signals from every TileCal cell will be digitized and sent directly to the back-end electronics, where the signals are reconstructed, stored, and sent to the first level of trigger at a rate of 40 MHz. This will provide better precis...

  20. On residual gas analysis during high temperature baking of graphite tiles

    International Nuclear Information System (INIS)

    Prakash, A A; Chaudhuri, P; Khirwadkar, S; Reddy, D Chenna; Saxena, Y C; Chauhan, N; Raole, P M

    2008-01-01

    Steady-state Super-conducting Tokamak-1 (SST-1) is a medium size tokamak with major radius of 1.1 m and minor radius of 0.20 m. It is designed for plasma discharge duration of 1000 seconds to obtain fully steady-state plasma operation. Plasma Facing Components (PFC), consisting of divertors, passive stabilizers, baffles and poloidal limiters are also designed to be UHV compatible for steady state operation. All PFC are made up of graphite tiles mechanically attached to the copper alloy substrate. Graphite is one of the preferred first wall armour material in present day tokamaks. High thermal shock resistance and low atomic number of carbon are the most important properties of graphite for this application. High temperature vacuum baking of graphite tiles is the standard process to remove the impurities. Residual Gas Analyzer (RGA) has been used for qualitative and quantitative measurements of released gases from graphite tiles during baking. Surface Analysis of graphite tiles has also been done before and after baking. This paper describes the residual gas analysis during baking and surface analysis of graphite tiles

  1. On residual gas analysis during high temperature baking of graphite tiles

    Energy Technology Data Exchange (ETDEWEB)

    Prakash, A A; Chaudhuri, P; Khirwadkar, S; Reddy, D Chenna; Saxena, Y C [Institute for Plasma Research, Bhat, Gandhinagar - 382 428 (India); Chauhan, N; Raole, P M [Facilitation Center for Industrial Plasma Technologies, IPR, Gandhinagar (India)], E-mail: arun@ipr.res.in

    2008-05-01

    Steady-state Super-conducting Tokamak-1 (SST-1) is a medium size tokamak with major radius of 1.1 m and minor radius of 0.20 m. It is designed for plasma discharge duration of 1000 seconds to obtain fully steady-state plasma operation. Plasma Facing Components (PFC), consisting of divertors, passive stabilizers, baffles and poloidal limiters are also designed to be UHV compatible for steady state operation. All PFC are made up of graphite tiles mechanically attached to the copper alloy substrate. Graphite is one of the preferred first wall armour material in present day tokamaks. High thermal shock resistance and low atomic number of carbon are the most important properties of graphite for this application. High temperature vacuum baking of graphite tiles is the standard process to remove the impurities. Residual Gas Analyzer (RGA) has been used for qualitative and quantitative measurements of released gases from graphite tiles during baking. Surface Analysis of graphite tiles has also been done before and after baking. This paper describes the residual gas analysis during baking and surface analysis of graphite tiles.

  2. Improving the scaling normalization for high-density oligonucleotide GeneChip expression microarrays

    Directory of Open Access Journals (Sweden)

    Lu Chao

    2004-07-01

    Full Text Available Abstract Background Normalization is an important step for microarray data analysis to minimize biological and technical variations. Choosing a suitable approach can be critical. The default method in GeneChip expression microarray uses a constant factor, the scaling factor (SF, for every gene on an array. The SF is obtained from a trimmed average signal of the array after excluding the 2% of the probe sets with the highest and the lowest values. Results Among the 76 U34A GeneChip experiments, the total signals on each array showed 25.8% variations in terms of the coefficient of variation, although all microarrays were hybridized with the same amount of biotin-labeled cRNA. The 2% of the probe sets with the highest signals that were normally excluded from SF calculation accounted for 34% to 54% of the total signals (40.7% ± 4.4%, mean ± sd. In comparison with normalization factors obtained from the median signal or from the mean of the log transformed signal, SF showed the greatest variation. The normalization factors obtained from log transformed signals showed least variation. Conclusions Eliminating 40% of the signal data during SF calculation failed to show any benefit. Normalization factors obtained with log transformed signals performed the best. Thus, it is suggested to use the mean of the logarithm transformed data for normalization, rather than the arithmetic mean of signals in GeneChip gene expression microarrays.

  3. Reuse of solid petroleum waste in the manufacture of porcelain stoneware tile.

    Science.gov (United States)

    Pinheiro, B C A; Holanda, J N F

    2013-03-30

    This study investigates the incorporation of solid petroleum waste as raw material into a porcelain stoneware tile body, in replacement to natural kaolin material by up to 5 wt.%. Tile formulations containing solid petroleum waste were pressed and fired at 1240 °C by using a fast-firing cycle. The tile pieces were tested to determine their properties (linear shrinkage, water absorption, apparent density, and flexural strength), sintered microstructure, and leaching toxicity. The results therefore indicated that the growing addition of solid petroleum waste into tile formulations leads to a decrease of linear shrinkage, apparent density, and flexural strength, and to an increase of water absorption of the produced tile materials. It was also found that the replacement of kaolin with solid petroleum waste, in the range up to 2.5 wt.%, allows the production of porcelain stoneware tile (group BIa, ISO 13006 standard). All concentrations of Ag, As, Ba, Cd, Cr (total), Hg, and Pb of the fired porcelain stoneware tile pieces in the leachate comply with the current regulatory limits. These results indicate that the solid petroleum waste could be used for high-quality porcelain stoneware tile production, thus giving rise to a new possibility for an environmentally friendly management of this abundant waste. Copyright © 2013 Elsevier Ltd. All rights reserved.

  4. The Level-1 Tile-Muon Trigger in the Tile Calorimeter Upgrade Program

    CERN Document Server

    Ryzhov, Andrey; The ATLAS collaboration

    2016-01-01

    The Tile Calorimeter (TileCal) is the central hadronic calorimeter of the ATLAS experiment at the Large Hadron Collider (LHC). The TileCal provides highly-segmented energy measurements for incident particles. Information from TileCal's last radial layer can assist in muon tagging using Level-1 muon trigger. It can help in the rejection of fake muon triggers arising from background radiation (slow charged particles - protons) without degrading the efficiency of the trigger. The TileCal main activity for Phase-0 upgrade ATLAS program (2013-2014) was the activation of the TileCal third layer signal for assisting the muon trigger at 1.0<|η|<1.3 (Tile-Muon Trigger). This report describes the Tile-Muon Trigger at TileCal upgrade activities, focusing on the new on-detector electronics such as Tile Muon Digitizer Board (TMDB) to provide (receive and digitize) the signal from eight TileCal modules to three Level-1 muon endcap sector logic blocks.

  5. Multi-application inter-tile synchronization on ultra-high-resolution display walls

    KAUST Repository

    Nam, Sungwon

    2010-01-01

    Ultra-high-resolution tiled-display walls are typically driven by a cluster of computers. Each computer may drive one or more displays. Synchronization between the computers is necessary to ensure that animated imagery displayed on the wall appears seamless. Most tiled-display middleware systems are designed around the assumption that only a single application instance is running in the tiled display at a time. Therefore synchronization can be achieved with a simple solution such as a networked barrier. When a tiled display has to support multiple applications at the same time, however, the simple networked barrier approach does not scale. In this paper we propose and experimentally validate two synchronization algorithms to achieve low-latency, intertile synchronization for multiple applications with independently varying frame rates. The two-phase algorithm is more generally applicable to various highresolution tiled display systems. The one-phase algorithm provides superior results but requires support for the Network Time Protocol and is more CPU-intensive. Copyright 2010 ACM.

  6. The Level-1 Tile-Muon Trigger in the Tile Calorimeter upgrade program

    International Nuclear Information System (INIS)

    Ryzhov, A.

    2016-01-01

    The Tile Calorimeter (TileCal) is the central hadronic calorimeter of the ATLAS experiment at the Large Hadron Collider (LHC). TileCal provides highly-segmented energy measurements for incident particles. Information from TileCal's outermost radial layer can assist in muon tagging in the Level-1 Muon Trigger by rejecting fake muon triggers due to slow charged particles (typically protons) without degrading the efficiency of the trigger. The main activity of the Tile-Muon Trigger in the ATLAS Phase-0 upgrade program was to install and to activate the TileCal signal processor module for providing trigger inputs to the Level-1 Muon Trigger. This report describes the Tile-Muon Trigger, focusing on the new detector electronics such as the Tile Muon Digitizer Board (TMDB) that receives, digitizes and then provides the signal from eight TileCal modules to three Level-1 muon endcap Sector-Logic Boards.

  7. Quality of Experience for Large Ultra-High-Resolution Tiled Displays with Synchronization Mismatch

    Directory of Open Access Journals (Sweden)

    Deshpande Sachin

    2011-01-01

    Full Text Available This paper relates to quality of experience when viewing images, video, or other content on large ultra-high-resolution displays made from individual display tiles. We define experiments to measure vernier acuity caused by synchronization mismatch for moving images. The experiments are used to obtain synchronization mismatch acuity threshold as a function of object velocity and as a function of occlusion or gap width. Our main motivation for measuring the synchronization mismatch vernier acuity is its relevance in the application of tiled display systems, which create a single contiguous image using individual discrete panels arranged in a matrix with each panel utilizing a distributed synchronization algorithm to display parts of the overall image. We also propose a subjective assessment method for perception evaluation of synchronization mismatch for large ultra-high-resolution tiled displays. For this, we design a synchronization mismatch measurement test video set for various tile configurations for various interpanel synchronization mismatch values. The proposed method for synchronization mismatch perception can evaluate tiled displays with or without tile bezels. The results from this work can help during design of low-cost tiled display systems, which utilize distributed synchronization mechanisms for a contiguous or bezeled image display.

  8. Fibrous-Ceramic/Aerogel Composite Insulating Tiles

    Science.gov (United States)

    White, Susan M.; Rasky, Daniel J.

    2004-01-01

    Fibrous-ceramic/aerogel composite tiles have been invented to afford combinations of thermal-insulation and mechanical properties superior to those attainable by making tiles of fibrous ceramics alone or aerogels alone. These lightweight tiles can be tailored to a variety of applications that range from insulating cryogenic tanks to protecting spacecraft against re-entry heating. The advantages and disadvantages of fibrous ceramics and aerogels can be summarized as follows: Tiles made of ceramic fibers are known for mechanical strength, toughness, and machinability. Fibrous ceramic tiles are highly effective as thermal insulators in a vacuum. However, undesirably, the porosity of these materials makes them permeable by gases, so that in the presence of air or other gases, convection and gas-phase conduction contribute to the effective thermal conductivity of the tiles. Other disadvantages of the porosity and permeability of fibrous ceramic tiles arise because gases (e.g., water vapor or cryogenic gases) can condense in pores. This condensation contributes to weight, and in the case of cryogenic systems, the heat of condensation undesirably adds to the heat flowing to the objects that one seeks to keep cold. Moreover, there is a risk of explosion associated with vaporization of previously condensed gas upon reheating. Aerogels offer low permeability, low density, and low thermal conductivity, but are mechanically fragile. The basic idea of the present invention is to exploit the best features of fibrous ceramic tiles and aerogels. In a composite tile according to the invention, the fibrous ceramic serves as a matrix that mechanically supports the aerogel, while the aerogel serves as a low-conductivity, low-permeability filling that closes what would otherwise be the open pores of the fibrous ceramic. Because the aerogel eliminates or at least suppresses permeation by gas, gas-phase conduction, and convection, the thermal conductivity of such a composite even at

  9. Fiber optic chemical sensors: The evolution of high- density fiber-optic DNA microarrays

    Science.gov (United States)

    Ferguson, Jane A.

    2001-06-01

    Sensors were developed for multianalyte monitoring, fermentation monitoring, lactate analysis, remote oxygen detection for use in bioremediation monitoring and in a fuel spill clean-up project, heavy metal analysis, and high density DNA microarrays. The major focus of this thesis involved creating and improving high-density DNA gene arrays. Fiber optic sensors are created using fluorescent indicators, polymeric supports, and optical fiber substrates. The fluorescent indicator is entrapped in a polymer layer and attached to the tip of the optical fiber. The tip of the fiber bearing the sensing layer (the distal end) is placed in the sample of interest while the other end of the fiber (the proximal end) is connected to an analysis system. Any length of fiber can be used without compromising the integrity or sensitivity of the system. A fiber optic oxygen sensor was designed incorporating an oxygen sensitive fluorescent dye and a gas permeable polymer attached to an optical fiber. The construction simplicity and ruggedness of the sensor enabled its deployment for in situ chemical oxidation and bioremediation studies. Optical fibers were also used as the substrate to detect biomolecules in solution. To monitor bioprocesses, the production of the analyte of interest must be coupled with a species that is optically measurable. For example, oxygen is consumed in many metabolic functions. The fiber optic oxygen sensor is equipped with an additional sensing layer. Upon contact with a specific biochemical in the sample, a reaction occurs in the additional sensing layer that either consumes or produces oxygen. This dual layer system was used to monitor the presence of lactate, an important metabolite for clinical and bioprocess analysis. In many biological and environmental systems, the generation of one species occurs coincidentally with the generation or consumption of another species. A multianalyte sensor was prepared that can monitor the simultaneous activity of pH, CO2

  10. Use of Low-Density DNA Microarrays and Photopolymerization for Genotyping Foodborne-Associated Noroviruses

    Science.gov (United States)

    Human noroviruses cause up to 21 million cases of foodborne disease in the United States annually and are the most common cause of acute gastroenteritis in industrialized countries. To reduce the burden of foodborne disease associated with viruses, the use of low density DNA microarrays in conjunct...

  11. On the use of flat tile armour in high heat flux components

    Science.gov (United States)

    Merola, M.; Vieider, G.

    1998-10-01

    The possibility to have a flat tile geometry for those high heat flux components subjected to a convective heat flux (namely the divertor dump target, lower vertical target, and the limiter) has been investigated. Because of the glancing incidence of the power load, if an armour tile falls off an extremely high heat flux hits the leading edge of the adjacent tile. As a result a rapid temperature increase occurs in the armour-heat sink joint. The heat flux to the water coolant also increases rapidly up to a factor of 1.7 and 2.3 for a beryllium and CFC armour, respectively, thus causing possible critical heat flux problems. Thermal stresses in the armour-heat sink joint double in less than 0.4 s and triplicate after 1 s thus leading to a possible cascade failure. Therefore the use of a flat tile geometry for these components does not seem to be appropriate. In this case a monoblock geometry gives a much more robust solution.

  12. On the use of flat tile armour in high heat flux components

    International Nuclear Information System (INIS)

    Merola, M.; Vieider, G.

    1998-01-01

    The possibility to have a flat tile geometry for those high heat flux components subjected to a convective heat flux (namely the divertor dump target, lower vertical target, and the limiter) has been investigated. Because of the glancing incidence of the power load, if an armour tile falls off an extremely high heat flux hits the leading edge of the adjacent tile. As a result a rapid temperature increase occurs in the armour-heat sink joint. The heat flux to the water coolant also increases rapidly up to a factor of 1.7 and 2.3 for a beryllium and CFC armour, respectively, thus causing possible critical heat flux problems. Thermal stresses in the armour-heat sink joint double in less than 0.4 s and triplicate after 1 s thus leading to a possible cascade failure. Therefore the use of a flat tile geometry for these components does not seem to be appropriate. In this case a monoblock geometry gives a much more robust solution. (orig.)

  13. Erosion and deposition on JET divertor and limiter tiles during the experimental campaigns 2005–2009

    International Nuclear Information System (INIS)

    Krat, S.; Coad, J.P.; Gasparyan, Yu.; Hakola, A.; Likonen, J.; Mayer, M.; Pisarev, A.; Widdowson, A.

    2013-01-01

    Erosion from and deposition on JET divertor tiles used during the 2007–2009 campaign and on inner wall guard limiter (IWGL) tiles used during 2005–2009 are studied. The tungsten coating on the divertor tiles was mostly intact with the largest erosion ∼30% in a small local area. Locally high erosion areas were observed on the load bearing divertor tile 5 and on the horizontal surface of the divertor tile 8. The IWGL tiles show a complicated distribution of erosion and deposition areas. The total amount of carbon deposited on the all IWGL tiles during the campaign 2005–2009 is estimated to be 65 g. The density of carbon deposits is estimated to be 0.67–0.83 g/cm 3

  14. Upgrade of the ATLAS Tile Calorimeter for the High Luminosity LHC

    CERN Document Server

    Tang, Fukun; The ATLAS collaboration

    2017-01-01

    The Tile Calorimeter (TileCal) is the hadronic calorimeter of ATLAS covering the central region of the ATLAS experiment. TileCal will undergo a major replacement of its on- and off-detector electronics in 2024 for the high luminosity program of the LHC. The calorimeter signals will be digitized and sent directly to the off-detector electronics, where the signals are reconstructed and transmitted to the first level of trigger at a rate of 40 MHz. This will provide a better precision of the calorimeter signals used by the trigger system and will allow the development of more complex trigger algorithms. Three different options are presently being investigated for the front-end electronic upgrade. Extensive test beam studies are being employed to determine which option will be selected. The off-detector electronics are based on the Advanced Telecommunications Computing Architecture (ATCA) standard and are equipped with high performance optical connectors. The system is designed to operate in a high radiation envi...

  15. Upgrade of the ATLAS Tile Calorimeter for the High Luminosity LHC

    CERN Document Server

    Tang, Fukun; The ATLAS collaboration

    2017-01-01

    The Tile Calorimeter (TileCal) is the hadronic calorimeter of ATLAS cover-ing the central region of the ATLAS experiment. TileCal will undergo a major replacement of its on- and off-detector electronics in 2024 for the high luminosity program of the LHC. The calorimeter signals will be digitized and sent directly to the off-detector electronics, where the signals are reconstructed and shipped to the first level of trigger at a rate of 40 MHz. This will provide a better precision of the calorimeter signals used by the trigger system and will allow the development of more complex trigger algorithms. Three different options are presently being investigated for the front-end electronic upgrade. Extensive test beam studies are being employed to determine which option will be selected. The off-detector electronic is based on the Advanced Telecommunications Computing Architecture (ATCA) standard and is equipped with high performance optical connectors. The system is designed to operate in a high radiation environmen...

  16. Upgrade of the ATLAS hadronic Tile calorimeter for the High luminosity LHC

    CERN Document Server

    AUTHOR|(INSPIRE)INSPIRE-00236332; The ATLAS collaboration

    2016-01-01

    The Tile Calorimeter (TileCal) is the hadronic calorimeter covering the central region of the ATLAS detector at the LHC. It is a sampling calorimeter consisting of alternating thin steel plates and scintillating tiles. Wavelength shifting fibers coupled to the tiles collect the produced light and are read out by photomultiplier tubes. An analog sum of the processed signal of several photomultipliers serves as input to the first level of trigger. Photomultiplier signals are then digitized and stored on detector and are only transferred off detector once the first trigger acceptance has been confirmed. The Large Hadron Collider (LHC) has envisaged a series of upgrades towards a High Luminosity LHC (HL-LHC) delivering five times the LHC nominal instantaneous luminosity. The ATLAS Phase II upgrade, in 2024, will accommodate the detector and data acquisition system for the HL-LHC. In particular, TileCal will undergo a major replacement of its on- and off-detector electronics. All signals will be digitized and then...

  17. Upgrade of the ATLAS hadronic Tile calorimeter for the High luminosity LHC

    CERN Document Server

    Mlynarikova, Michaela; The ATLAS collaboration

    2017-01-01

    The Tile Calorimeter (TileCal) is the hadronic calorimeter covering the central region of the ATLAS detector at the LHC. It is a sampling calorimeter consisting of alternating thin steel plates and scintillating tiles. Wavelength shifting fibers coupled to the tiles collect the produced light and are read out by photomultiplier tubes. Currently, an analog sum of the processed signal of several photomultipliers serves as input to the first level of trigger. Photomultiplier signals are then digitized and stored on detector and are only transferred off detector once the first trigger acceptance has been confirmed. The Large Hadron Collider (LHC) has envisaged a series of upgrades towards a High Luminosity LHC (HL-LHC) delivering five times the LHC nominal instantaneous luminosity. The ATLAS Phase II upgrade, in 2024, will accommodate the detector and data acquisition system for the HL-LHC. In particular, TileCal will undergo a major replacement of its on- and off-detector electronics. All signals will be digitiz...

  18. Design of an Enterobacteriaceae Pan-genome Microarray Chip

    DEFF Research Database (Denmark)

    Lukjancenko, Oksana; Ussery, David

    2010-01-01

    -density microarray chip has been designed, using 116 Enterobacteriaceae genome sequences, taking into account the enteric pan-genome. Probes for the microarray were checked in silico and performance of the chip, based on experimental strains from four different genera, demonstrate a relatively high ability...... to distinguish those strains on genus, species, and pathotype/serovar levels. Additionally, the microarray performed well when investigating which genes were found in a given strain of interest. The Enterobacteriaceae pan-genome microarray, based on 116 genomes, provides a valuable tool for determination...

  19. Performance of the Tile PreProcessor Demonstrator for the ATLAS Tile Calorimeter Phase II Upgrade

    OpenAIRE

    Carrio Argos, Fernando; Valero, Alberto

    2015-01-01

    The Tile Calorimeter PreProcessor (TilePPr) demonstrator is a high performance double AMC board based on FPGA resources and QSFP modules. This board has been designed in the framework of the ATLAS Tile Calorimeter (TileCal) Demonstrator Project for the Phase II Upgrade as the first stage of the back-end electronics. The TilePPr demonstrator has been conceived for receiving and processing the data coming from the front-end electronics of the TileCal Demonstrator module, as well as for configur...

  20. Improvement of PVC floor tiles by gamma radiation

    International Nuclear Information System (INIS)

    Plessis, T.A. du; Badenhorst, F.

    1988-01-01

    Gamma radiation presents a unique method of transforming highly plasticized PVC floor tiles, manufactured at high speed through injection moulding, into a high quality floor covering at a cost at least 30% less than similarly rated rubber tiles. A specially formulated PVC compound was developed in collaboration with a leading manufacturer of floor tiles. These tiles are gamma crosslinked in its shipping cartons to form a dimensionally stable product which is highly fire resistant and inert to most chemicals and solvents. These crosslinked tiles are more flexible than the highly filled conventional PVC floor tiles, scratch resistant and have a longer lifespan and increased colour fastness. These tiles are also less expensive to install than conventional rubber tiles. (author)

  1. Upgrade of the ATLAS hadronic Tile Calorimeter for the High luminosity LHC

    CERN Document Server

    AUTHOR|(INSPIRE)INSPIRE-00127668; The ATLAS collaboration

    2017-01-01

    The Tile Calorimeter (TileCal) is the hadronic calorimeter of ATLAS covering the central region of the ATLAS experiment. TileCal is a sampling calorimeter with steel as absorber and scintillators as active medium. The scintillators are read-out by wavelength shifting fibers coupled to photomultiplier tubes (PMT). The analogue signals from the PMTs are amplified, shaped and digitized by sampling the signal every 25 ns. The High Luminosity Large Hadron Collider (HL-LHC) will have a peak luminosity of 5 1034cm2s1, five times higher than the design luminosity of the LHC. TileCal will undergo a major replacement of its on- and off-detector electronics for the high luminosity programme of the LHC starting in 2026. All signals will be digitized and then transferred directly to the off-detector electronics, where the signals will be reconstructed, stored, and sent to the first level of trigger at a rate of 40 MHz. This will provide better precision of the calorimeter signals used by the trigger system and will allow ...

  2. Upgrade of the ATLAS hadronic Tile Calorimeter for the High luminosity LHC

    CERN Document Server

    Solodkov, Alexander; The ATLAS collaboration

    2017-01-01

    The Tile Calorimeter (TileCal) is the hadronic calorimeter of ATLAS covering the central region of the ATLAS experiment. TileCal is a sampling calorimeter with steel as absorber and scintillators as active medium. The scintillators are read-out by wavelength shifting fibers coupled to photomultiplier tubes (PMT). The analogue signals from the PMTs are amplified, shaped and digitized by sampling the signal every 25 ns. The High Luminosity Large Hadron Collider (HL-LHC) will have a peak luminosity of 5x10ˆ34 cm-2s-1, five times higher than the design luminosity of the LHC. TileCal will undergo a major replacement of its on- and off-detector electronics for the high luminosity programme of the LHC starting in 2026. All signals will be digitized and then transferred directly to the off-detector electronics, where the signals will be reconstructed, stored, and sent to the first level of trigger at a rate of 40 MHz. This will provide better precision of the calorimeter signals used by the trigger system and will a...

  3. On the use of flat tile armour in high heat flux components

    Energy Technology Data Exchange (ETDEWEB)

    Merola, M.; Vieider, G

    1998-10-01

    The possibility to have a flat tile geometry for those high heat flux components subjected to a convective heat flux (namely the divertor dump target, lower vertical target, and the limiter) has been investigated. Because of the glancing incidence of the power load, if an armour tile falls off an extremely high heat flux hits the leading edge of the adjacent tile. As a result a rapid temperature increase occurs in the armour-heat sink joint. The heat flux to the water coolant also increases rapidly up to a factor of 1.7 and 2.3 for a beryllium and CFC armour, respectively, thus causing possible critical heat flux problems. Thermal stresses in the armour-heat sink joint double in less than 0.4 s and triplicate after 1 s thus leading to a possible cascade failure. Therefore the use of a flat tile geometry for these components does not seem to be appropriate. In this case a monoblock geometry gives a much more robust solution. (orig.) 7 refs.

  4. Upgrade of the ATLAS hadronic Tile calorimeter for the High luminosity LHC

    CERN Document Server

    Asensi Tortajada, Ignacio; The ATLAS collaboration

    2017-01-01

    The Tile Calorimeter (TileCal) is the hadronic calorimeter covering the central region of the ATLAS detector at the LHC. It is a sampling calorimeter consisting of alternating thin steel plates and scintillating tiles. Wavelength shifting fibers coupled to the tiles collect the produced light and are read out by photomultiplier tubes. An analog sum of the processed signal of several photomultipliers serves as input to the first level of trigger. Photomultiplier signals are then digitized at 40 MHz and stored on detector and are only transferred off detector once the first level trigger acceptance has been confirmed (at a rate of maximum 100 kHz). The Large Hadron Collider (LHC) has envisaged a series of upgrades towards a High Luminosity LHC (HL-LHC) delivering five times the LHC nominal instantaneous luminosity. The ATLAS Phase II upgrade, in 2024, will accommodate the upgrade of the detector and data acquisition system for the HL-LHC. In particular, TileCal will undergo a major replacement of its on- and of...

  5. Tile-based parallel coordinates and its application in financial visualization

    Science.gov (United States)

    Alsakran, Jamal; Zhao, Ye; Zhao, Xinlei

    2010-01-01

    Parallel coordinates technique has been widely used in information visualization applications and it has achieved great success in visualizing multivariate data and perceiving their trends. Nevertheless, visual clutter usually weakens or even diminishes its ability when the data size increases. In this paper, we first propose a tile-based parallel coordinates, where the plotting area is divided into rectangular tiles. Each tile stores an intersection density that counts the total number of polylines intersecting with that tile. Consequently, the intersection density is mapped to optical attributes, such as color and opacity, by interactive transfer functions. The method visualizes the polylines efficiently and informatively in accordance with the density distribution, and thus, reduces visual cluttering and promotes knowledge discovery. The interactivity of our method allows the user to instantaneously manipulate the tiles distribution and the transfer functions. Specifically, the classic parallel coordinates rendering is a special case of our method when each tile represents only one pixel. A case study on a real world data set, U.S. stock mutual fund data of year 2006, is presented to show the capability of our method in visually analyzing financial data. The presented visual analysis is conducted by an expert in the domain of finance. Our method gains the support from professionals in the finance field, they embrace it as a potential investment analysis tool for mutual fund managers, financial planners, and investors.

  6. Highly Symmetric and Congruently Tiled Meshes for Shells and Domes

    Science.gov (United States)

    Rasheed, Muhibur; Bajaj, Chandrajit

    2016-01-01

    We describe the generation of all possible shell and dome shapes that can be uniquely meshed (tiled) using a single type of mesh face (tile), and following a single meshing (tiling) rule that governs the mesh (tile) arrangement with maximal vertex, edge and face symmetries. Such tiling arrangements or congruently tiled meshed shapes, are frequently found in chemical forms (fullerenes or Bucky balls, crystals, quasi-crystals, virus nano shells or capsids), and synthetic shapes (cages, sports domes, modern architectural facades). Congruently tiled meshes are both aesthetic and complete, as they support maximal mesh symmetries with minimal complexity and possess simple generation rules. Here, we generate congruent tilings and meshed shape layouts that satisfy these optimality conditions. Further, the congruent meshes are uniquely mappable to an almost regular 3D polyhedron (or its dual polyhedron) and which exhibits face-transitive (and edge-transitive) congruency with at most two types of vertices (each type transitive to the other). The family of all such congruently meshed polyhedra create a new class of meshed shapes, beyond the well-studied regular, semi-regular and quasi-regular classes, and their duals (platonic, Catalan and Johnson). While our new mesh class is infinite, we prove that there exists a unique mesh parametrization, where each member of the class can be represented by two integer lattice variables, and moreover efficiently constructable. PMID:27563368

  7. Sensor and method for measuring the areal density of magnetic nanoparticles on a micro-array

    NARCIS (Netherlands)

    2003-01-01

    The present invention relates to a method and a device for magnetic detection of binding of biological molecules on a biochip. A magnetoresistive sensor device for measuring an areal density of magnetic nanoparticles on a micro-array, the magnetic nanoparticles (15) being directly or indirectly

  8. Heat Transfer Measurement and Modeling in Rigid High-Temperature Reusable Surface Insulation Tiles

    Science.gov (United States)

    Daryabeigi, Kamran; Knutson, Jeffrey R.; Cunnington, George R.

    2011-01-01

    Heat transfer in rigid reusable surface insulations was investigated. Steady-state thermal conductivity measurements in a vacuum were used to determine the combined contribution of radiation and solid conduction components of heat transfer. Thermal conductivity measurements at higher pressures were then used to estimate the effective insulation characteristic length for gas conduction modeling. The thermal conductivity of the insulation can then be estimated at any temperature and pressure in any gaseous media. The methodology was validated by comparing estimated thermal conductivities with published data on a rigid high-temperature silica reusable surface insulation tile. The methodology was also applied to the alumina enhanced thermal barrier tiles. Thermal contact resistance for thermal conductivity measurements on rigid tiles was also investigated. A technique was developed to effectively eliminate thermal contact resistance on the rigid tile s cold-side surface for the thermal conductivity measurements.

  9. The design of central column protection tiles for the TCV tokamak

    International Nuclear Information System (INIS)

    Pitts, R.A.; Chavan, R.; Moret, J.M.

    1999-01-01

    The large variety of plasma shapes produced in the TCV tokamak places unique demands on the plasma facing surfaces. In particular, the central column graphite armour tiles are solicited during the creation of all TCV plasmas and function as power handling surfaces for both limited and diverted discharges. The higher power flux densities accompanying the addition of electron cyclotron heating systems have necessitated a new, optimized, design for these tiles. The optimization process and the subsequent new tile design are described. A basic 'two point' model of the scrape-off layer plasma in conjunction with TCV equilibrium reconstructions and a simplified representation of the local magnetic field line geometry are used to impose simulated power flux densities onto a parametric toroidal tile contour. The thermo-mechanical response of the tile is then investigated via full 3-D finite element simulations accounting for the non-linear temperature dependence of the graphite thermal diffusivity and radiation from the tile surface. The final design choice is a compromise between the requirements for adequate power handling for a range of magnetic configurations, the need to protect against tile edge misalignment in the presence of grazing field line angles of incidence and the space restrictions imposed by vacuum vessel design. (author)

  10. Improved porous silicon (P-Si) microarray based PSA (prostate specific antigen) immunoassay by optimized surface density of the capture antibody

    Science.gov (United States)

    Lee, SangWook; Kim, Soyoun; Malm, Johan; Jeong, Ok Chan; Lilja, Hans; Laurell, Thomas

    2014-01-01

    Enriching the surface density of immobilized capture antibodies enhances the detection signal of antibody sandwich microarrays. In this study, we improved the detection sensitivity of our previously developed P-Si (porous silicon) antibody microarray by optimizing concentrations of the capturing antibody. We investigated immunoassays using a P-Si microarray at three different capture antibody (PSA - prostate specific antigen) concentrations, analyzing the influence of the antibody density on the assay detection sensitivity. The LOD (limit of detection) for PSA was 2.5ngmL−1, 80pgmL−1, and 800fgmL−1 when arraying the PSA antibody, H117 at the concentration 15µgmL−1, 35µgmL−1 and 154µgmL−1, respectively. We further investigated PSA spiked into human female serum in the range of 800fgmL−1 to 500ngmL−1. The microarray showed a LOD of 800fgmL−1 and a dynamic range of 800 fgmL−1 to 80ngmL−1 in serum spiked samples. PMID:24016590

  11. Density based pruning for identification of differentially expressed genes from microarray data

    Directory of Open Access Journals (Sweden)

    Xu Jia

    2010-11-01

    Full Text Available Abstract Motivation Identification of differentially expressed genes from microarray datasets is one of the most important analyses for microarray data mining. Popular algorithms such as statistical t-test rank genes based on a single statistics. The false positive rate of these methods can be improved by considering other features of differentially expressed genes. Results We proposed a pattern recognition strategy for identifying differentially expressed genes. Genes are mapped to a two dimension feature space composed of average difference of gene expression and average expression levels. A density based pruning algorithm (DB Pruning is developed to screen out potential differentially expressed genes usually located in the sparse boundary region. Biases of popular algorithms for identifying differentially expressed genes are visually characterized. Experiments on 17 datasets from Gene Omnibus Database (GEO with experimentally verified differentially expressed genes showed that DB pruning can significantly improve the prediction accuracy of popular identification algorithms such as t-test, rank product, and fold change. Conclusions Density based pruning of non-differentially expressed genes is an effective method for enhancing statistical testing based algorithms for identifying differentially expressed genes. It improves t-test, rank product, and fold change by 11% to 50% in the numbers of identified true differentially expressed genes. The source code of DB pruning is freely available on our website http://mleg.cse.sc.edu/degprune

  12. Optical design and studies of a tiled single grating pulse compressor for enhanced parametric space and compensation of tiling errors

    Science.gov (United States)

    Daiya, D.; Patidar, R. K.; Sharma, J.; Joshi, A. S.; Naik, P. A.; Gupta, P. D.

    2017-04-01

    A new optical design of tiled single grating pulse compressor has been proposed, set-up and studied. The parametric space, i.e. the laser beam diameters that can be accommodated in the pulse compressor for the given range of compression lengths, has been calculated and shown to have up to two fold enhancement in comparison to our earlier proposed optical designs. The new optical design of the tiled single grating pulse compressor has an additional advantage of self compensation of various tiling errors like longitudinal and lateral piston, tip and groove density mismatch, compared to the earlier designs. Experiments have been carried out for temporal compression of 650 ps positively chirped laser pulses, at central wavelength 1054 nm, down to 235 fs in the tiled grating pulse compressor set up with the proposed design. Further, far field studies have been performed to show the desired compensation of the tiling errors takes place in the new compressor.

  13. Programmable DNA tile self-assembly using a hierarchical sub-tile strategy.

    Science.gov (United States)

    Shi, Xiaolong; Lu, Wei; Wang, Zhiyu; Pan, Linqiang; Cui, Guangzhao; Xu, Jin; LaBean, Thomas H

    2014-02-21

    DNA tile based self-assembly provides a bottom-up approach to construct desired nanostructures. DNA tiles have been directly constructed from ssDNA and readily self-assembled into 2D lattices and 3D superstructures. However, for more complex lattice designs including algorithmic assemblies requiring larger tile sets, a more modular approach could prove useful. This paper reports a new DNA 'sub-tile' strategy to easily create whole families of programmable tiles. Here, we demonstrate the stability and flexibility of our sub-tile structures by constructing 3-, 4- and 6-arm DNA tiles that are subsequently assembled into 2D lattices and 3D nanotubes according to a hierarchical design. Assembly of sub-tiles, tiles, and superstructures was analyzed using polyacrylamide gel electrophoresis and atomic force microscopy. DNA tile self-assembly methods provide a bottom-up approach to create desired nanostructures; the sub-tile strategy adds a useful new layer to this technique. Complex units can be made from simple parts. The sub-tile approach enables the rapid redesign and prototyping of complex DNA tile sets and tiles with asymmetric designs.

  14. Gene expression analysis of the biocontrol fungus Trichoderma harzianum in the presence of tomato plants, chitin, or glucose using a high-density oligonucleotide microarray.

    Science.gov (United States)

    Samolski, Ilanit; de Luis, Alberto; Vizcaíno, Juan Antonio; Monte, Enrique; Suárez, M Belén

    2009-10-13

    It has recently been shown that the Trichoderma fungal species used for biocontrol of plant diseases are capable of interacting with plant roots directly, behaving as symbiotic microorganisms. With a view to providing further information at transcriptomic level about the early response of Trichoderma to a host plant, we developed a high-density oligonucleotide (HDO) microarray encompassing 14,081 Expressed Sequence Tag (EST)-based transcripts from eight Trichoderma spp. and 9,121 genome-derived transcripts of T. reesei, and we have used this microarray to examine the gene expression of T. harzianum either alone or in the presence of tomato plants, chitin, or glucose. Global microarray analysis revealed 1,617 probe sets showing differential expression in T. harzianum mycelia under at least one of the culture conditions tested as compared with one another. Hierarchical clustering and heat map representation showed that the expression patterns obtained in glucose medium clustered separately from the expression patterns observed in the presence of tomato plants and chitin. Annotations using the Blast2GO suite identified 85 of the 257 transcripts whose probe sets afforded up-regulated expression in response to tomato plants. Some of these transcripts were predicted to encode proteins related to Trichoderma-host (fungus or plant) associations, such as Sm1/Elp1 protein, proteases P6281 and PRA1, enchochitinase CHIT42, or QID74 protein, although previously uncharacterized genes were also identified, including those responsible for the possible biosynthesis of nitric oxide, xenobiotic detoxification, mycelium development, or those related to the formation of infection structures in plant tissues. The effectiveness of the Trichoderma HDO microarray to detect different gene responses under different growth conditions in the fungus T. harzianum strongly indicates that this tool should be useful for further assays that include different stages of plant colonization, as well as

  15. Application of broad-spectrum resequencing microarray for genotyping rhabdoviruses.

    Science.gov (United States)

    Dacheux, Laurent; Berthet, Nicolas; Dissard, Gabriel; Holmes, Edward C; Delmas, Olivier; Larrous, Florence; Guigon, Ghislaine; Dickinson, Philip; Faye, Ousmane; Sall, Amadou A; Old, Iain G; Kong, Katherine; Kennedy, Giulia C; Manuguerra, Jean-Claude; Cole, Stewart T; Caro, Valérie; Gessain, Antoine; Bourhy, Hervé

    2010-09-01

    The rapid and accurate identification of pathogens is critical in the control of infectious disease. To this end, we analyzed the capacity for viral detection and identification of a newly described high-density resequencing microarray (RMA), termed PathogenID, which was designed for multiple pathogen detection using database similarity searching. We focused on one of the largest and most diverse viral families described to date, the family Rhabdoviridae. We demonstrate that this approach has the potential to identify both known and related viruses for which precise sequence information is unavailable. In particular, we demonstrate that a strategy based on consensus sequence determination for analysis of RMA output data enabled successful detection of viruses exhibiting up to 26% nucleotide divergence with the closest sequence tiled on the array. Using clinical specimens obtained from rabid patients and animals, this method also shows a high species level concordance with standard reference assays, indicating that it is amenable for the development of diagnostic assays. Finally, 12 animal rhabdoviruses which were currently unclassified, unassigned, or assigned as tentative species within the family Rhabdoviridae were successfully detected. These new data allowed an unprecedented phylogenetic analysis of 106 rhabdoviruses and further suggest that the principles and methodology developed here may be used for the broad-spectrum surveillance and the broader-scale investigation of biodiversity in the viral world.

  16. Application of Broad-Spectrum Resequencing Microarray for Genotyping Rhabdoviruses▿

    Science.gov (United States)

    Dacheux, Laurent; Berthet, Nicolas; Dissard, Gabriel; Holmes, Edward C.; Delmas, Olivier; Larrous, Florence; Guigon, Ghislaine; Dickinson, Philip; Faye, Ousmane; Sall, Amadou A.; Old, Iain G.; Kong, Katherine; Kennedy, Giulia C.; Manuguerra, Jean-Claude; Cole, Stewart T.; Caro, Valérie; Gessain, Antoine; Bourhy, Hervé

    2010-01-01

    The rapid and accurate identification of pathogens is critical in the control of infectious disease. To this end, we analyzed the capacity for viral detection and identification of a newly described high-density resequencing microarray (RMA), termed PathogenID, which was designed for multiple pathogen detection using database similarity searching. We focused on one of the largest and most diverse viral families described to date, the family Rhabdoviridae. We demonstrate that this approach has the potential to identify both known and related viruses for which precise sequence information is unavailable. In particular, we demonstrate that a strategy based on consensus sequence determination for analysis of RMA output data enabled successful detection of viruses exhibiting up to 26% nucleotide divergence with the closest sequence tiled on the array. Using clinical specimens obtained from rabid patients and animals, this method also shows a high species level concordance with standard reference assays, indicating that it is amenable for the development of diagnostic assays. Finally, 12 animal rhabdoviruses which were currently unclassified, unassigned, or assigned as tentative species within the family Rhabdoviridae were successfully detected. These new data allowed an unprecedented phylogenetic analysis of 106 rhabdoviruses and further suggest that the principles and methodology developed here may be used for the broad-spectrum surveillance and the broader-scale investigation of biodiversity in the viral world. PMID:20610710

  17. High-performance bidiagonal reduction using tile algorithms on homogeneous multicore architectures

    KAUST Repository

    Ltaief, Hatem

    2013-04-01

    This article presents a new high-performance bidiagonal reduction (BRD) for homogeneous multicore architectures. This article is an extension of the high-performance tridiagonal reduction implemented by the same authors [Luszczek et al., IPDPS 2011] to the BRD case. The BRD is the first step toward computing the singular value decomposition of a matrix, which is one of the most important algorithms in numerical linear algebra due to its broad impact in computational science. The high performance of the BRD described in this article comes from the combination of four important features: (1) tile algorithms with tile data layout, which provide an efficient data representation in main memory; (2) a two-stage reduction approach that allows to cast most of the computation during the first stage (reduction to band form) into calls to Level 3 BLAS and reduces the memory traffic during the second stage (reduction from band to bidiagonal form) by using high-performance kernels optimized for cache reuse; (3) a data dependence translation layer that maps the general algorithm with column-major data layout into the tile data layout; and (4) a dynamic runtime system that efficiently schedules the newly implemented kernels across the processing units and ensures that the data dependencies are not violated. A detailed analysis is provided to understand the critical impact of the tile size on the total execution time, which also corresponds to the matrix bandwidth size after the reduction of the first stage. The performance results show a significant improvement over currently established alternatives. The new high-performance BRD achieves up to a 30-fold speedup on a 16-core Intel Xeon machine with a 12000×12000 matrix size against the state-of-the-art open source and commercial numerical software packages, namely LAPACK, compiled with optimized and multithreaded BLAS from MKL as well as Intel MKL version 10.2. © 2013 ACM.

  18. Programmable DNA tile self-assembly using a hierarchical sub-tile strategy

    International Nuclear Information System (INIS)

    Shi, Xiaolong; Lu, Wei; Wang, Zhiyu; Pan, Linqiang; Cui, Guangzhao; Xu, Jin; LaBean, Thomas H

    2014-01-01

    DNA tile based self-assembly provides a bottom-up approach to construct desired nanostructures. DNA tiles have been directly constructed from ssDNA and readily self-assembled into 2D lattices and 3D superstructures. However, for more complex lattice designs including algorithmic assemblies requiring larger tile sets, a more modular approach could prove useful. This paper reports a new DNA ‘sub-tile’ strategy to easily create whole families of programmable tiles. Here, we demonstrate the stability and flexibility of our sub-tile structures by constructing 3-, 4- and 6-arm DNA tiles that are subsequently assembled into 2D lattices and 3D nanotubes according to a hierarchical design. Assembly of sub-tiles, tiles, and superstructures was analyzed using polyacrylamide gel electrophoresis and atomic force microscopy. DNA tile self-assembly methods provide a bottom-up approach to create desired nanostructures; the sub-tile strategy adds a useful new layer to this technique. Complex units can be made from simple parts. The sub-tile approach enables the rapid redesign and prototyping of complex DNA tile sets and tiles with asymmetric designs. (paper)

  19. Carbohydrate microarrays

    DEFF Research Database (Denmark)

    Park, Sungjin; Gildersleeve, Jeffrey C; Blixt, Klas Ola

    2012-01-01

    In the last decade, carbohydrate microarrays have been core technologies for analyzing carbohydrate-mediated recognition events in a high-throughput fashion. A number of methods have been exploited for immobilizing glycans on the solid surface in a microarray format. This microarray...... of substrate specificities of glycosyltransferases. This review covers the construction of carbohydrate microarrays, detection methods of carbohydrate microarrays and their applications in biological and biomedical research....

  20. Versatile High Resolution Oligosaccharide Microarrays for Plant Glycobiology and Cell Wall Research

    DEFF Research Database (Denmark)

    Pedersen, Henriette Lodberg; Fangel, Jonatan Ulrik; McCleary, Barry

    2012-01-01

    Microarrays are powerful tools for high throughput analysis, and hundreds or thousands of molecular interactions can be assessed simultaneously using very small amounts of analytes. Nucleotide microarrays are well established in plant research, but carbohydrate microarrays are much less establish...

  1. Microarray-based ultra-high resolution discovery of genomic deletion mutations

    Science.gov (United States)

    2014-01-01

    Background Oligonucleotide microarray-based comparative genomic hybridization (CGH) offers an attractive possible route for the rapid and cost-effective genome-wide discovery of deletion mutations. CGH typically involves comparison of the hybridization intensities of genomic DNA samples with microarray chip representations of entire genomes, and has widespread potential application in experimental research and medical diagnostics. However, the power to detect small deletions is low. Results Here we use a graduated series of Arabidopsis thaliana genomic deletion mutations (of sizes ranging from 4 bp to ~5 kb) to optimize CGH-based genomic deletion detection. We show that the power to detect smaller deletions (4, 28 and 104 bp) depends upon oligonucleotide density (essentially the number of genome-representative oligonucleotides on the microarray chip), and determine the oligonucleotide spacings necessary to guarantee detection of deletions of specified size. Conclusions Our findings will enhance a wide range of research and clinical applications, and in particular will aid in the discovery of genomic deletions in the absence of a priori knowledge of their existence. PMID:24655320

  2. Broad spectrum microarray for fingerprint-based bacterial species identification

    Directory of Open Access Journals (Sweden)

    Frey Jürg E

    2010-02-01

    Full Text Available Abstract Background Microarrays are powerful tools for DNA-based molecular diagnostics and identification of pathogens. Most target a limited range of organisms and are based on only one or a very few genes for specific identification. Such microarrays are limited to organisms for which specific probes are available, and often have difficulty discriminating closely related taxa. We have developed an alternative broad-spectrum microarray that employs hybridisation fingerprints generated by high-density anonymous markers distributed over the entire genome for identification based on comparison to a reference database. Results A high-density microarray carrying 95,000 unique 13-mer probes was designed. Optimized methods were developed to deliver reproducible hybridisation patterns that enabled confident discrimination of bacteria at the species, subspecies, and strain levels. High correlation coefficients were achieved between replicates. A sub-selection of 12,071 probes, determined by ANOVA and class prediction analysis, enabled the discrimination of all samples in our panel. Mismatch probe hybridisation was observed but was found to have no effect on the discriminatory capacity of our system. Conclusions These results indicate the potential of our genome chip for reliable identification of a wide range of bacterial taxa at the subspecies level without laborious prior sequencing and probe design. With its high resolution capacity, our proof-of-principle chip demonstrates great potential as a tool for molecular diagnostics of broad taxonomic groups.

  3. Novel Protein Microarray Technology to Examine Men with Prostate Cancer

    National Research Council Canada - National Science Library

    Lilja, Hans

    2005-01-01

    The authors developed a novel macro and nanoporous silicon surface for protein microarrays to facilitate high-throughput biomarker discovery, and high-density protein-chip array analyses of complex biological samples...

  4. Hierarchical Self Assembly of Patterns from the Robinson Tilings: DNA Tile Design in an Enhanced Tile Assembly Model.

    Science.gov (United States)

    Padilla, Jennifer E; Liu, Wenyan; Seeman, Nadrian C

    2012-06-01

    We introduce a hierarchical self assembly algorithm that produces the quasiperiodic patterns found in the Robinson tilings and suggest a practical implementation of this algorithm using DNA origami tiles. We modify the abstract Tile Assembly Model, (aTAM), to include active signaling and glue activation in response to signals to coordinate the hierarchical assembly of Robinson patterns of arbitrary size from a small set of tiles according to the tile substitution algorithm that generates them. Enabling coordinated hierarchical assembly in the aTAM makes possible the efficient encoding of the recursive process of tile substitution.

  5. Examination of C/C flat tile mock-ups with hypervapotron cooling after high heat flux testing

    International Nuclear Information System (INIS)

    Schedler, B.; Friedrich, T.; Traxler, H.; Eidenberger, E.; Scheu, C.; Clemens, H.; Pippan, R.; Escourbiac, F.

    2007-01-01

    Two C/C flat tile mock-ups with a hypervapotron cooling concept, have been successfully tested beyond ITER specification (3000 cycles at 15 MW/m 2 , 300 cycles at 20 MW/m 2 and 800-1000 cycles at 25 MW/m 2 ) in two electron beam testing facilities [F. Escourbiac, et al., Experimental simulation of cascade failure effect on tungsten and CFC flat tile armoured HHF components, Fusion Eng. Des., submitted for publication; F. Escourbiac, et al., A mature industrial solution for ITER divertor plasma facing components: hypervapotron cooling concept adapted to Tore Supra flat tile technology, Fusion Eng. Des. 75-79 (2005) 387-390]. Both mock-ups provide a SNECMA SEPCARB NS31 armour, which has been joined onto the CuCrZr heat sink by active metal casting (AMC) and electron beam welding (EBW). No tile detachment or sudden loss of single tiles has been observed; a cascade-like failure of flat tile armours was impossible to generate. At the maximum cyclic heat flux load of 25 MW/m 2 all tested tiles performed well except one, which revealed already a clear indication in the thermographic examination at the end of the manufacture. Visual examination and analysis of metallographic cuts of the remaining tiles demonstrated that the interface has not been altered. In addition, the shear strength of the C/C to copper joints measured after the high heat flux (HHF) test has been found to be still above the interlamellar shear strength of the used C/C material. The high resistance of the interface is explained by a modification of the C/C to copper joint interface due to silicon originating from the used C/C material

  6. Examination of C/C flat tile mock-ups with hypervapotron cooling after high heat flux testing

    Energy Technology Data Exchange (ETDEWEB)

    Schedler, B. [Technology Centre of PLANSEE SE, A-6600 Reutte (Austria)], E-mail: bertram.schedler@plansee.com; Friedrich, T.; Traxler, H. [Technology Centre of PLANSEE SE, A-6600 Reutte (Austria); Eidenberger, E.; Scheu, C.; Clemens, H. [Department of Physical Metallurgy and Materials Testing, University of Leoben, A-8700 Leoben (Austria); Pippan, R. [Austrian Academy of Sciences, Erich-Schmid-Institute of Material Science, A-8700 Leoben (Austria); Escourbiac, F. [Association EURATOM-CEA, DSM/DRFC, CEA Cadarache, F-13108 St. Paul Lez Durance (France)

    2007-04-15

    Two C/C flat tile mock-ups with a hypervapotron cooling concept, have been successfully tested beyond ITER specification (3000 cycles at 15 MW/m{sup 2}, 300 cycles at 20 MW/m{sup 2} and 800-1000 cycles at 25 MW/m{sup 2}) in two electron beam testing facilities [F. Escourbiac, et al., Experimental simulation of cascade failure effect on tungsten and CFC flat tile armoured HHF components, Fusion Eng. Des., submitted for publication; F. Escourbiac, et al., A mature industrial solution for ITER divertor plasma facing components: hypervapotron cooling concept adapted to Tore Supra flat tile technology, Fusion Eng. Des. 75-79 (2005) 387-390]. Both mock-ups provide a SNECMA SEPCARB NS31 armour, which has been joined onto the CuCrZr heat sink by active metal casting (AMC) and electron beam welding (EBW). No tile detachment or sudden loss of single tiles has been observed; a cascade-like failure of flat tile armours was impossible to generate. At the maximum cyclic heat flux load of 25 MW/m{sup 2} all tested tiles performed well except one, which revealed already a clear indication in the thermographic examination at the end of the manufacture. Visual examination and analysis of metallographic cuts of the remaining tiles demonstrated that the interface has not been altered. In addition, the shear strength of the C/C to copper joints measured after the high heat flux (HHF) test has been found to be still above the interlamellar shear strength of the used C/C material. The high resistance of the interface is explained by a modification of the C/C to copper joint interface due to silicon originating from the used C/C material.

  7. Remote parallel rendering for high-resolution tiled display walls

    KAUST Repository

    Nachbaur, Daniel; Dumusc, Raphael; Bilgili, Ahmet; Hernando, Juan; Eilemann, Stefan

    2014-01-01

    © 2014 IEEE. We present a complete, robust and simple to use hardware and software stack delivering remote parallel rendering of complex geometrical and volumetric models to high resolution tiled display walls in a production environment. We describe the setup and configuration, present preliminary benchmarks showing interactive framerates, and describe our contributions for a seamless integration of all the software components.

  8. Remote parallel rendering for high-resolution tiled display walls

    KAUST Repository

    Nachbaur, Daniel

    2014-11-01

    © 2014 IEEE. We present a complete, robust and simple to use hardware and software stack delivering remote parallel rendering of complex geometrical and volumetric models to high resolution tiled display walls in a production environment. We describe the setup and configuration, present preliminary benchmarks showing interactive framerates, and describe our contributions for a seamless integration of all the software components.

  9. A microarray-based genotyping and genetic mapping approach for highly heterozygous outcrossing species enables localization of a large fraction of the unassembled Populus trichocarpa genome sequence.

    Science.gov (United States)

    Drost, Derek R; Novaes, Evandro; Boaventura-Novaes, Carolina; Benedict, Catherine I; Brown, Ryan S; Yin, Tongming; Tuskan, Gerald A; Kirst, Matias

    2009-06-01

    Microarrays have demonstrated significant power for genome-wide analyses of gene expression, and recently have also revolutionized the genetic analysis of segregating populations by genotyping thousands of loci in a single assay. Although microarray-based genotyping approaches have been successfully applied in yeast and several inbred plant species, their power has not been proven in an outcrossing species with extensive genetic diversity. Here we have developed methods for high-throughput microarray-based genotyping in such species using a pseudo-backcross progeny of 154 individuals of Populus trichocarpa and P. deltoides analyzed with long-oligonucleotide in situ-synthesized microarray probes. Our analysis resulted in high-confidence genotypes for 719 single-feature polymorphism (SFP) and 1014 gene expression marker (GEM) candidates. Using these genotypes and an established microsatellite (SSR) framework map, we produced a high-density genetic map comprising over 600 SFPs, GEMs and SSRs. The abundance of gene-based markers allowed us to localize over 35 million base pairs of previously unplaced whole-genome shotgun (WGS) scaffold sequence to putative locations in the genome of P. trichocarpa. A high proportion of sampled scaffolds could be verified for their placement with independently mapped SSRs, demonstrating the previously un-utilized power that high-density genotyping can provide in the context of map-based WGS sequence reassembly. Our results provide a substantial contribution to the continued improvement of the Populus genome assembly, while demonstrating the feasibility of microarray-based genotyping in a highly heterozygous population. The strategies presented are applicable to genetic mapping efforts in all plant species with similarly high levels of genetic diversity.

  10. Synthesis of aerogel tiles with high light scattering length

    CERN Document Server

    Danilyuk, A F; Okunev, A G; Onuchin, A P; Shaurman, S A

    1999-01-01

    The possibility of aerogel tiles production for RICH detectors is described. Monolithic blocks of silica aerogel were synthesized by two-step sol-gel processing of tetraethoxysilane Si(OEt) sub 4 followed by high temperature supercritical drying with organic solvent. The important characteristic of aerogel is the light scattering length. In the wide range of refraction indexes the light scattering length exceeds 4 cm at 400 nm.

  11. Coal fly ash utilization: Low temperature sintering of wall tiles

    International Nuclear Information System (INIS)

    Chandra, Navin; Sharma, Priya; Pashkov, G.L.; Voskresenskaya, E.N.; Amritphale, S.S.; Baghel, Narendra S.

    2008-01-01

    We present here a study of the sintering of fly ash and its mixture with low alkali pyrophyllite in the presence of sodium hexa meta phosphate (SHMP), a complex activator of sintering, for the purpose of wall tile manufacturing. The sintering of fly ash with SHMP in the temperature range 925-1050 deg. C produces tiles with low impact strength; however, the incremental addition of low alkali pyrophyllite improves impact strength. The impact strength of composites with ≥40% (w/w) pyrophyllite in the fly ash-pyrophyllite mix satisfies the acceptable limit (19.6 J/m) set by the Indian Standards Institute for wall tiles. Increasing the pyrophyllite content results in an increase in the apparent density of tiles, while shrinkage and water absorption decrease. The strength of fly ash tiles is attributed to the formation of a silicophosphate phase; in pyrophyllite rich tiles, it is attributed to the formation of a tridymite-structured T-AlPO 4 phase. Scanning electron micrographs show that the reinforcing rod shaped T-AlPO 4 crystals become more prominent as the pyrophyllite content increases in the sintered tiles

  12. Triangular spiral tilings

    International Nuclear Information System (INIS)

    Sushida, Takamichi; Hizume, Akio; Yamagishi, Yoshikazu

    2012-01-01

    The topology of spiral tilings is intimately related to phyllotaxis theory and continued fractions. A quadrilateral spiral tiling is determined by a suitable chosen triple (ζ, m, n), where ζ element of D/R, and m and n are relatively prime integers. We give a simple characterization when (ζ, m, n) produce a triangular spiral tiling. When m and n are fixed, the admissible generators ζ form a curve in the unit disk. The family of triangular spiral tilings with opposed parastichy pairs (m, n) is parameterized by the divergence angle arg (ζ), while triangular spiral tilings with non-opposed parastichy pairs are parameterized by the plastochrone ratio 1/|ζ|. The generators for triangular spiral tilings with opposed parastichy pairs are not dense in the complex parameter space, while those with non-opposed parastichy pairs are dense. The proofs will be given in a general setting of spiral multiple tilings. We present paper-folding (origami) sheets that build spiral towers whose top-down views are triangular tilings. (paper)

  13. Topology of tiling spaces

    CERN Document Server

    Sadun, Lorenzo

    2008-01-01

    Aperiodic tilings are interesting to mathematicians and scientists for both theoretical and practical reasons. The serious study of aperiodic tilings began as a solution to a problem in logic. Simpler aperiodic tilings eventually revealed hidden "symmetries" that were previously considered impossible, while the tilings themselves were quite striking. The discovery of quasicrystals showed that such aperiodicity actually occurs in nature and led to advances in materials science. Many properties of aperiodic tilings can be discerned by studying one tiling at a time. However, by studying families of tilings, further properties are revealed. This broader study naturally leads to the topology of tiling spaces. This book is an introduction to the topology of tiling spaces, with a target audience of graduate students who wish to learn about the interface of topology with aperiodic order. It isn't a comprehensive and cross-referenced tome about everything having to do with tilings, which would be too big, too hard to ...

  14. Two-dimensional numerical study of ELMs-induced erosion of tungsten divertor target tiles with different edge shapes

    International Nuclear Information System (INIS)

    Huang, Yan; Sun, Jizhong; Hu, Wanpeng; Sang, Chaofeng; Wang, Dezhen

    2016-01-01

    Highlights: • Thermal performance of three edge-shaped divertor tiles was assessed numerically. • All the divertor tiles exposed to type-I ELMs like ITER's will melt. • The rounded edge tile thermally performs the best in all tiles of interest. • The incident energy flux density was evaluated with structural effects considered. - Abstract: Thermal performance of the divertor tile with different edge shapes was assessed numerically along the poloidal direction by a two-dimensional heat conduction model with considering the geometrical effects of castellated divertor tiles on the properties of its adjacent plasma. The energy flux density distribution arriving at the castellated divertor tile surface was evaluated by a two-dimension-in-space and three-dimension-in-velocity particle-in-cell plus Monte Carlo Collisions code and then the obtained energy flux distribution was used as input for the heat conduction model. The simulation results showed that the divertor tiles with any edge shape of interest (rectangular edge, slanted edge, and rounded edge) would melt, especially, in the edge surface region of facing plasma poloidally under typical heat flux density of a transient event of type-I ELMs for ITER, deposition energy of 1 MJ/m"2 in a duration of 600 μs. In comparison with uniform energy deposition, the vaporizing erosion was reduced greatly but the melting erosion was aggravated noticeably in the edge area of plasma facing diveror tile. Of three studied edge shapes, the simulation results indicated that the divertor plate with rounded edge was the most resistant to the thermal erosion.

  15. Upgrade of the ATLAS hadronic Tile Calorimeter for the High luminosity LHC

    CERN Document Server

    Rodriguez Bosca, Sergi; The ATLAS collaboration

    2017-01-01

    The Tile Calorimeter is the hadronic calorimeter covering the central region of the ATLAS detector at the Large Hadron Collider. It is a scintillator-steel sampling calorimeter read out via wavelength shifting fibers coupled to photomultiplier tubes (PMT). The PMT signals are digitized and stored on detector until a trigger is received. The High-Luminosity phase of LHC (HL-LHC) expected to begin in year 2026 requires new electronics to meet the requirements of a 1 MHz trigger, higher ambient radiation, and for better performance under higher pileup. All the TileCal on- and off-detector electronics will be replaced during the shutdown of 2024-2025. PMT signals from every TileCal cell will be digitized and sent directly to the back-end electronics, where the signals are reconstructed, stored, and sent to the first level of trigger at a rate of 40 MHz. This will provide better precision of the calorimeter signals used by the trigger system and will allow the development of more complex trigger algorithms. Change...

  16. Upgrade of the ATLAS hadronic Tile Calorimeter for the High luminosity LHC

    CERN Document Server

    Rodriguez Bosca, Sergi; The ATLAS collaboration

    2017-01-01

    The Tile Calorimeter is the hadronic calorimeter covering the central region of the ATLAS detector at the Large Hadron Collider. It is a scintillator-steel sampling calorimeter read out via wavelength shifting fibers coupled to photomultiplier tubes (PMT). The PMT signals are digitized and stored on detector until a trigger is received. The High-Luminosity phase of LHC (HL-LHC)expected to begin in year 2026 requires new electronics to meet the requirements of a 1 MHz trigger, higher ambient radiation, and for better performance under higher pileup. All the TileCal on- and off-detector electronics will be replaced during the shutdown of 2024-2025. PMT signals from every TileCal cell will be digitized and sent directly to the back-end electronics, where the signals are reconstructed, stored, and sent to the first level of trigger at a rate of 40 MHz. This will provide better precision of the calorimeter signals used by the trigger system and will allow the development of more complex trigger algorithms. Changes...

  17. Performance of the ATLAS Hadronic Tile Calorimeter in Run-2 and its Upgrade for the High Luminosity LHC

    CERN Document Server

    Solovyanov, Oleg; The ATLAS collaboration

    2017-01-01

    The Tile Calorimeter (TileCal) of the ATLAS experiment at the LHC is the central hadronic calorimeter designed for energy reconstruction of hadrons, jets, tau-particles and missing transverse energy. TileCal is a scintillator-steel sampling calorimeter and it covers the region of pseudorapidity < 1.7. The scintillation light produced in the scintillator tiles is transmitted by wavelength shifting fibers to photomultiplier tubes (PMTs). The analog signals from the PMTs are amplified, shaped and digitized by sampling the signal every 25 ns. The TileCal frontend electronics reads out the signals produced by about 10000 channels measuring energies ranging from ~30 MeV to ~2 TeV. Each stage of the signal production from scintillation light to the signal reconstruction is monitored and calibrated. The performance of the Tile calorimeter has been studied in-situ employing cosmic ray muons and a large sample of proton-proton collisions acquired during the operations of the LHC. Prompt isolated muons of high moment...

  18. Electrokinetic desalination of glazed ceramic tiles

    DEFF Research Database (Denmark)

    Ottosen, Lisbeth M.; Ferreira, Celia; Christensen, Iben Vernegren

    2010-01-01

    Electrokinetic desalination is a method where an applied electric DC field is the driving force for removal of salts from porous building materials. In the present paper, the method is tested in laboratory scale for desalination of single ceramic tiles. In a model system, where a tile...... was contaminated with NaCl during submersion and subsequently desalinated by the method, the desalination was completed in that the high and problematic initial Cl(-) concentration was reduced to an unproblematic concentration. Further conductivity measurements showed a very low conductivity in the tile after...... treatment, indicating that supply of ions from the poultice at the electrodes into the tile was limited. Electroosmotic transport of water was seen when low ionic content was reached. Experiments were also conducted with XVIII-century tiles, which had been removed from Palacio Centeno (Lisbon) during...

  19. Recycling Roof Tile Waste Material for Wall Cover Tiles

    Directory of Open Access Journals (Sweden)

    Ambar Mulyono

    2014-02-01

    Full Text Available Prior research on roof tile waste treatment has attempted to find the appropriate technology to reuse old roof tile waste by  create  wall  cladding  materials  from  it.  Through  exploration  and  experimentation,  a  treatment  method  has  been discovered  to  transform  the  tile  fragments  into  artificial  stone  that  resembles  the  shape  of  coral.  This  baked  clay artificial stone material is then processed as a decorative element for vertical surfaces that are not load-bearing, such as on the interior and exterior walls of a building. Before applying the fragments as wall tiles, several steps must be taken: 1  Blunting,  which  changes  the  look  of  tile  fragments  using  a  machine  created  specifically  to  blunt  the  roof-tile fragment  edges,  2  Closing  the  pores  of  the  blunted  fragments  as  a  finishing  step  that  can  be  done  with  a  transparent coat or a solid color of paint, 3 Planting the transformed roof-tile fragments on a prepared tile body made of concrete. In this study, the second phase is done using the method of ceramics glazing at a temperature of 700 °C. The finishing step is the strength of this product because it produces a rich color artificial pebble.

  20. Development and validation of a flax (Linum usitatissimum L.) gene expression oligo microarray.

    Science.gov (United States)

    Fenart, Stéphane; Ndong, Yves-Placide Assoumou; Duarte, Jorge; Rivière, Nathalie; Wilmer, Jeroen; van Wuytswinkel, Olivier; Lucau, Anca; Cariou, Emmanuelle; Neutelings, Godfrey; Gutierrez, Laurent; Chabbert, Brigitte; Guillot, Xavier; Tavernier, Reynald; Hawkins, Simon; Thomasset, Brigitte

    2010-10-21

    Flax (Linum usitatissimum L.) has been cultivated for around 9,000 years and is therefore one of the oldest cultivated species. Today, flax is still grown for its oil (oil-flax or linseed cultivars) and its cellulose-rich fibres (fibre-flax cultivars) used for high-value linen garments and composite materials. Despite the wide industrial use of flax-derived products, and our actual understanding of the regulation of both wood fibre production and oil biosynthesis more information must be acquired in both domains. Recent advances in genomics are now providing opportunities to improve our fundamental knowledge of these complex processes. In this paper we report the development and validation of a high-density oligo microarray platform dedicated to gene expression analyses in flax. Nine different RNA samples obtained from flax inner- and outer-stems, seeds, leaves and roots were used to generate a collection of 1,066,481 ESTs by massive parallel pyrosequencing. Sequences were assembled into 59,626 unigenes and 48,021 sequences were selected for oligo design and high-density microarray (Nimblegen 385K) fabrication with eight, non-overlapping 25-mers oligos per unigene. 18 independent experiments were used to evaluate the hybridization quality, precision, specificity and accuracy and all results confirmed the high technical quality of our microarray platform. Cross-validation of microarray data was carried out using quantitative qRT-PCR. Nine target genes were selected on the basis of microarray results and reflected the whole range of fold change (both up-regulated and down-regulated genes in different samples). A statistically significant positive correlation was obtained comparing expression levels for each target gene across all biological replicates both in qRT-PCR and microarray results. Further experiments illustrated the capacity of our arrays to detect differential gene expression in a variety of flax tissues as well as between two contrasted flax varieties

  1. Development and validation of a flax (Linum usitatissimum L. gene expression oligo microarray

    Directory of Open Access Journals (Sweden)

    Gutierrez Laurent

    2010-10-01

    Full Text Available Abstract Background Flax (Linum usitatissimum L. has been cultivated for around 9,000 years and is therefore one of the oldest cultivated species. Today, flax is still grown for its oil (oil-flax or linseed cultivars and its cellulose-rich fibres (fibre-flax cultivars used for high-value linen garments and composite materials. Despite the wide industrial use of flax-derived products, and our actual understanding of the regulation of both wood fibre production and oil biosynthesis more information must be acquired in both domains. Recent advances in genomics are now providing opportunities to improve our fundamental knowledge of these complex processes. In this paper we report the development and validation of a high-density oligo microarray platform dedicated to gene expression analyses in flax. Results Nine different RNA samples obtained from flax inner- and outer-stems, seeds, leaves and roots were used to generate a collection of 1,066,481 ESTs by massive parallel pyrosequencing. Sequences were assembled into 59,626 unigenes and 48,021 sequences were selected for oligo design and high-density microarray (Nimblegen 385K fabrication with eight, non-overlapping 25-mers oligos per unigene. 18 independent experiments were used to evaluate the hybridization quality, precision, specificity and accuracy and all results confirmed the high technical quality of our microarray platform. Cross-validation of microarray data was carried out using quantitative qRT-PCR. Nine target genes were selected on the basis of microarray results and reflected the whole range of fold change (both up-regulated and down-regulated genes in different samples. A statistically significant positive correlation was obtained comparing expression levels for each target gene across all biological replicates both in qRT-PCR and microarray results. Further experiments illustrated the capacity of our arrays to detect differential gene expression in a variety of flax tissues as well

  2. Supplementing High-Density SNP Microarrays for Additional Coverage of Disease-Related Genes: Addiction as a Paradigm

    Energy Technology Data Exchange (ETDEWEB)

    SacconePhD, Scott F [Washington University, St. Louis; Chesler, Elissa J [ORNL; Bierut, Laura J [Washington University, St. Louis; Kalivas, Peter J [Medical College of South Carolina, Charleston; Lerman, Caryn [University of Pennsylvania; Saccone, Nancy L [Washington University, St. Louis; Uhl, George R [Johns Hopkins University; Li, Chuan-Yun [Peking University; Philip, Vivek M [ORNL; Edenberg, Howard [Indiana University; Sherry, Steven [National Center for Biotechnology Information; Feolo, Michael [National Center for Biotechnology Information; Moyzis, Robert K [Johns Hopkins University; Rutter, Joni L [National Institute of Drug Abuse

    2009-01-01

    Commercial SNP microarrays now provide comprehensive and affordable coverage of the human genome. However, some diseases have biologically relevant genomic regions that may require additional coverage. Addiction, for example, is thought to be influenced by complex interactions among many relevant genes and pathways. We have assembled a list of 486 biologically relevant genes nominated by a panel of experts on addiction. We then added 424 genes that showed evidence of association with addiction phenotypes through mouse QTL mappings and gene co-expression analysis. We demonstrate that there are a substantial number of SNPs in these genes that are not well represented by commercial SNP platforms. We address this problem by introducing a publicly available SNP database for addiction. The database is annotated using numeric prioritization scores indicating the extent of biological relevance. The scores incorporate a number of factors such as SNP/gene functional properties (including synonymy and promoter regions), data from mouse systems genetics and measures of human/mouse evolutionary conservation. We then used HapMap genotyping data to determine if a SNP is tagged by a commercial microarray through linkage disequilibrium. This combination of biological prioritization scores and LD tagging annotation will enable addiction researchers to supplement commercial SNP microarrays to ensure comprehensive coverage of biologically relevant regions.

  3. Transcriptional landscape estimation from tiling array data using a model of signal shift and drift

    DEFF Research Database (Denmark)

    Rasmussen, Simon; Jarmer, Hanne Østergaard; Nicolas, P

    2009-01-01

    MOTIVATION: High-density oligonucleotide tiling array technology holds the promise of a better description of the complexity and the dynamics of transcriptional landscapes. In organisms such as bacteria and yeasts, transcription can be measured on a genome-wide scale with a resolution >25 bp...

  4. Wang Tiles in Computer Graphics

    CERN Document Server

    Lagae, Ares

    2009-01-01

    Many complex signals in computer graphics, such as point distributions and textures, cannot be efficiently synthesized and stored. This book presents tile-based methods based on Wang tiles and corner tiles to solve both these problems. Instead of synthesizing a complex signal when needed, the signal is synthesized beforehand over a small set of Wang tiles or corner tiles. Arbitrary large amounts of that signal can then efficiently be generated when needed by generating a stochastic tiling, and storing only a small set of tiles reduces storage requirements. A tile-based method for generating a

  5. Miles of tiles

    CERN Document Server

    Radin, Charles

    1999-01-01

    "In this book, we try to display the value (and joy!) of starting from a mathematically amorphous problem and combining ideas from diverse sources to produce new and significant mathematics--mathematics unforeseen from the motivating problem ..." --from the Preface The common thread throughout this book is aperiodic tilings; the best-known example is the "kite and dart" tiling. This tiling has been widely discussed, particularly since 1984 when it was adopted to model quasicrystals. The presentation uses many different areas of mathematics and physics to analyze the new features of such tilings. Although many people are aware of the existence of aperiodic tilings, and maybe even their origin in a question in logic, not everyone is familiar with their subtleties and the underlying rich mathematical theory. For the interested reader, this book fills that gap. Understanding this new type of tiling requires an unusual variety of specialties, including ergodic theory, functional analysis, group theory and ring the...

  6. Nondeterministic self-assembly of two tile types on a lattice.

    Science.gov (United States)

    Tesoro, S; Ahnert, S E

    2016-04-01

    Self-assembly is ubiquitous in nature, particularly in biology, where it underlies the formation of protein quaternary structure and protein aggregation. Quaternary structure assembles deterministically and performs a wide range of important functions in the cell, whereas protein aggregation is the hallmark of a number of diseases and represents a nondeterministic self-assembly process. Here we build on previous work on a lattice model of deterministic self-assembly to investigate nondeterministic self-assembly of single lattice tiles and mixtures of two tiles at varying relative concentrations. Despite limiting the simplicity of the model to two interface types, which results in 13 topologically distinct single tiles and 106 topologically distinct sets of two tiles, we observe a wide variety of concentration-dependent behaviors. Several two-tile sets display critical behaviors in the form of a sharp transition from bound to unbound structures as the relative concentration of one tile to another increases. Other sets exhibit gradual monotonic changes in structural density, or nonmonotonic changes, while again others show no concentration dependence at all. We catalog this extensive range of behaviors and present a model that provides a reasonably good estimate of the critical concentrations for a subset of the critical transitions. In addition, we show that the structures resulting from these tile sets are fractal, with one of two different fractal dimensions.

  7. Performance of the ATLAS Tile calorimeter

    CERN Document Server

    Bertoli, Gabriele; The ATLAS collaboration

    2015-01-01

    The Tile Calorimeter (TileCal) of the ATLAS experiment at the LHC is the central hadronic calorimeter designed for energy reconstruction of hadrons, jets, tau­particles and missing transverse energy. TileCal is a scintillator­steel sampling calorimeter and it covers the region of pseudorapidity < 1.7. The scintillation light produced in the tiles is transmitted by wavelength shifting fibers to photomultiplier tubes (PMTs). The analog signals from the PMTs are amplified, shaped and digitized by sampling the signal every 25 ns. The TileCal front­end electronics read out the signals produced by about 10000 channels measuring energies ranging from ~30 MeV to ~2 TeV. The read­out system is responsible for reconstructing the data in real­time. The digitized signals are reconstructed with the Optimal Filtering algorithm, which computes for each channel the signal amplitude, time and quality factor at the required high rate. Each stage of the signal production from scintillation light to the signal reconstruc...

  8. NANO-SIZED PIGMENT APPLICATIONS IN İZNİK TILES

    Directory of Open Access Journals (Sweden)

    Esin GÜNAY

    2012-12-01

    Full Text Available Traditional İznik tiles are known as “unproducable” due to its high quartz content. İznik tiles contain four different layers as “body, engobe (slip, decors and glaze” and each one has some different starting materials. Recent studies have showed that the production techniques and the particle size of pigments are important parameters in development of colours. TUBITAK MRC and İznik Foundation carried out an experimental work to improve and understand the effects of nanotechnology application to İznik tiles. High quartz content was kept as it is and pigments were applied in decorationas nano-sized pigments.İznik tiles were produced and comparison was carried out between traditional and modern İznik tiles in colour and brightness. Characterization techniques were used in order to understand andcompare the results and also the effects of nano-sized pigments to İznik tiles.

  9. Porcelain tiles by the dry route

    International Nuclear Information System (INIS)

    Melchiades, F. G.; Daros, M. T.; Boschi, A. O.

    2010-01-01

    In Brazil, the second largest tile producer of the world, at present, 70% of the tiles are produced by the dry route. One of the main reasons that lead to this development is the fact that the dry route uses approximately 30% less thermal energy them the traditional wet route. The increasing world concern with the environment and the recognition of the central role played by the water also has pointed towards privileging dry processes. In this context the objective of the present work is to study the feasibility of producing high quality porcelain tiles by the dry route. A brief comparison of the dry and wet route, in standard conditions industrially used today to produce tiles that are not porcelain tiles, shows that there are two major differences: the particle sizes obtained by the wet route are usually considerably finer and the capability of mixing the different minerals, the intimacy of the mixture, is also usually better in the wet route. The present work studied the relative importance of these differences and looked for raw materials and operational conditions that would result in better performance and glazed porcelain tiles of good quality. (Author) 7 refs.

  10. Characterization of double face adhesive sheets for ceramic tile installation

    International Nuclear Information System (INIS)

    Nascimento, Otavio L.; Mansur, Alexandra A.P.; Mansur, Herman S.

    2011-01-01

    The main goal of this work was the characterization of an innovative ceramic tile installation product based on double face adhesive sheets. Density, hardness, tensile strength, x-ray diffraction, infrared spectroscopy, and scanning electron microscopy coupled with spectroscopy of dispersive energy assays were conducted. The results are in agreement with some manufacture specifications and the obtained information will be crucial in the analysis of durability and stability of the ceramic tile system installed with this new product. (author)

  11. A two-stage ceramic tile grout sealing process using a high power diode laser—Grout development and materials characteristics

    Science.gov (United States)

    Lawrence, J.; Li, L.; Spencer, J. T.

    1998-04-01

    Work has been conducted using a 60 Wcw high power diode laser (HPDL) in order to determine the feasibility and characteristics of sealing the void between adjoining ceramic tiles with a specially developed grout material having an impermeable enamel surface glaze. A two-stage process has been developed using a new grout material which consists of two distinct components: an amalgamated compound substrate and a glazed enamel surface; the amalgamated compound seal providing a tough, heat resistant bulk substrate, whilst the enamel provides an impervious surface. HPDL processing has resulted in crack free seals produced in normal atmospheric conditions. The basic process phenomena are investigated and the laser effects in terms of seal morphology, composition and microstructure are presented. Also, the resultant heat affects are analysed and described, as well as the effects of the shield gases, O 2 and Ar, during laser processing. Tiles were successfully sealed with power densities as low as 500 W/cm 2 and at rates up to 600 mm/min. Contact angle measurements revealed that due to the wettability characteristics of the amalgamated oxide compound grout (AOCG), laser surface treatment was necessary in order to alter the surface from a polycrystalline to a semi-amorphous structure, thus allowing the enamel to adhere. Bonding of the enamel to the AOCG and the ceramic tiles was identified as being principally due to van der Waals forces, and on a very small scale, some of the base AOCG material dissolving into the glaze.

  12. Fractal analysis of mandibular trabecular bone: optimal tile sizes for the tile counting method.

    Science.gov (United States)

    Huh, Kyung-Hoe; Baik, Jee-Seon; Yi, Won-Jin; Heo, Min-Suk; Lee, Sam-Sun; Choi, Soon-Chul; Lee, Sun-Bok; Lee, Seung-Pyo

    2011-06-01

    This study was performed to determine the optimal tile size for the fractal dimension of the mandibular trabecular bone using a tile counting method. Digital intraoral radiographic images were obtained at the mandibular angle, molar, premolar, and incisor regions of 29 human dry mandibles. After preprocessing, the parameters representing morphometric characteristics of the trabecular bone were calculated. The fractal dimensions of the processed images were analyzed in various tile sizes by the tile counting method. The optimal range of tile size was 0.132 mm to 0.396 mm for the fractal dimension using the tile counting method. The sizes were closely related to the morphometric parameters. The fractal dimension of mandibular trabecular bone, as calculated with the tile counting method, can be best characterized with a range of tile sizes from 0.132 to 0.396 mm.

  13. The Sad Case of the Columbine Tiles.

    Science.gov (United States)

    Dowling-Sendor, Benjamin

    2003-01-01

    Analyzes free-speech challenge to school district's guidelines for acceptable expressions on ceramic tiles painted by Columbine High School students to express their feelings about the massacre. Tenth Circuit found that tile painting constituted school-sponsored speech and thus district had the constitutional authority under "Hazelwood School…

  14. OPTIMIZATION-BASED APPROACH TO TILING OF FINITE AREAS WITH ARBITRARY SETS OF WANG TILES

    Directory of Open Access Journals (Sweden)

    Marek Tyburec

    2017-11-01

    Full Text Available Wang tiles proved to be a convenient tool for the design of aperiodic tilings in computer graphics and in materials engineering. While there are several algorithms for generation of finite-sized tilings, they exploit the specific structure of individual tile sets, which prevents their general usage. In this contribution, we reformulate the NP-complete tiling generation problem as a binary linear program, together with its linear and semidefinite relaxations suitable for the branch and bound method. Finally, we assess the performance of the established formulations on generations of several aperiodic tilings reported in the literature, and conclude that the linear relaxation is better suited for the problem.

  15. Comparison of performance of tile drainage routines in SWAT 2009 and 2012 in an extensively tile-drained watershed in the Midwest

    Science.gov (United States)

    Guo, Tian; Gitau, Margaret; Merwade, Venkatesh; Arnold, Jeffrey; Srinivasan, Raghavan; Hirschi, Michael; Engel, Bernard

    2018-01-01

    Subsurface tile drainage systems are widely used in agricultural watersheds in the Midwestern US and enable the Midwest area to become highly productive agricultural lands, but can also create environmental problems, for example nitrate-N contamination associated with drainage waters. The Soil and Water Assessment Tool (SWAT) has been used to model watersheds with tile drainage. SWAT2012 revisions 615 and 645 provide new tile drainage routines. However, few studies have used these revisions to study tile drainage impacts at both field and watershed scales. Moreover, SWAT2012 revision 645 improved the soil moisture based curve number calculation method, which has not been fully tested. This study used long-term (1991-2003) field site and river station data from the Little Vermilion River (LVR) watershed to evaluate performance of tile drainage routines in SWAT2009 revision 528 (the old routine) and SWAT2012 revisions 615 and 645 (the new routine). Both the old and new routines provided reasonable but unsatisfactory (NSE runoff. The calibrated monthly tile flow, surface flow, nitrate-N in tile and surface flow, sediment and annual corn and soybean yield results from SWAT with the old and new tile drainage routines were compared with observed values. Generally, the new routine provided acceptable simulated tile flow (NSE = 0.48-0.65) and nitrate in tile flow (NSE = 0.48-0.68) for field sites with random pattern tile and constant tile spacing, while the old routine simulated tile flow and nitrate in tile flow results for the field site with constant tile spacing were unacceptable (NSE = 0.00-0.32 and -0.29-0.06, respectively). The new modified curve number calculation method in revision 645 (NSE = 0.50-0.81) better simulated surface runoff than revision 615 (NSE = -0.11-0.49). The calibration provided reasonable parameter sets for the old and new routines in the LVR watershed, and the validation results showed that the new routine has the potential to accurately

  16. Comparison of medieval decorated floor-tiles with clay and tile fragments from the kilns at Bistrup

    International Nuclear Information System (INIS)

    Als Hansen, B.; Aaman Soerensen, M.; McKerrell, H.; Mejdahl, V.

    1977-01-01

    In 1976 two tile kilns with numerous wasters of ornamented tiles were excavated at Bistrup near Roskilde. Identical ornaments had earlier been found on floor-tiles from seven sites, mainly churches, in north and east Zealand. The question arose whether some of these tiles were made locally or whether all tiles carrying this particular ornamentation were made at Bistrup. Preliminary results obtained from a comparison of the tiles with material from Bistrup means of neutron activation analysis indicate that not all tiles were made at Bistrup. (author)

  17. Replicate high-density rat genome oligonucleotide microarrays reveal hundreds of regulated genes in the dorsal root ganglion after peripheral nerve injury.

    Directory of Open Access Journals (Sweden)

    Mannion James W

    2002-10-01

    Full Text Available Abstract Background Rat oligonucleotide microarrays were used to detect changes in gene expression in the dorsal root ganglion (DRG 3 days following sciatic nerve transection (axotomy. Two comparisons were made using two sets of triplicate microarrays, naïve versus naïve and naïve versus axotomy. Results Microarray variability was assessed using the naïve versus naïve comparison. These results support use of a P 1.5-fold expression change and P 1.5-fold and P in situ hybridization verified the expression of 24 transcripts. These data showed an 83% concordance rate with the arrays; most mismatches represent genes with low expression levels reflecting limits of array sensitivity. A significant correlation was found between actual mRNA differences and relative changes between microarrays (r2 = 0.8567. Temporal patterns of individual genes regulation varied. Conclusions We identify parameters for microarray analysis which reduce error while identifying many putatively regulated genes. Functional classification of these genes suggest reorganization of cell structural components, activation of genes expressed by immune and inflammatory cells and down-regulation of genes involved in neurotransmission.

  18. Electro-desalination of glazed tile panels - discussion of possibilities

    DEFF Research Database (Denmark)

    Dias-Ferreira, Célia; Ottosen, Lisbeth M.; Ribeiro, Alexandra B.

    2016-01-01

    . In the few experiments conducted on tiles with attached mortar, the mortar was desalinated to a higher degree than the biscuit and successful desalination of the biscuit through the mortar requires further research. In-situ pilot scale tests were performed on highly salt-contaminated walls without tiles...... by placing electrodes at the same side of the wall. Thus it may be possible to desalinate tile panels, without any physical damage of the fragile glaze, by placing electrodes on the back of the wall or by removing some tiles, placing electrodes in their spaces, and extracting the salts from there before...... the tiles are placed back again....

  19. High throughput screening of starch structures using carbohydrate microarrays

    DEFF Research Database (Denmark)

    Tanackovic, Vanja; Rydahl, Maja Gro; Pedersen, Henriette Lodberg

    2016-01-01

    In this study we introduce the starch-recognising carbohydrate binding module family 20 (CBM20) from Aspergillus niger for screening biological variations in starch molecular structure using high throughput carbohydrate microarray technology. Defined linear, branched and phosphorylated...

  20. Performance of the ATLAS Tile Calorimeter

    CERN Document Server

    Heelan, Louise; The ATLAS collaboration

    2015-01-01

    The ATLAS Tile hadronic calorimeter (TileCal) provides highly-segmented energy measurements of incoming particles. It is a key detector for the measurement of hadrons, jets, tau leptons and missing transverse energy. It is also useful for identification and reconstruction of muons due to good signal to noise ratio. The calorimeter consists of thin steel plates and 460,000 scintillating tiles configured into 5000 cells, each viewed by two photomultipliers. The calorimeter response and its readout electronics is monitored to better than 1% using radioactive source, laser and charge injection systems. The calibration and performance of the calorimeter have been established through test beam measurements, cosmic ray muons and the large sample of proton-proton collisions acquired in 2011 and 2012. Results on the calorimeter performance are presented, including the absolute energy scale, timing, noise and associated stabilities. The results demonstrate that the Tile Calorimeter has performed well within the design ...

  1. Performance of the ATLAS hadronic Tile calorimeter

    CERN Document Server

    Mlynarikova, Michaela; The ATLAS collaboration

    2017-01-01

    The ATLAS Tile Calorimeter (TileCal) of the ATLAS experiment at the LHC is the central hadronic calorimeter designed for reconstruction of hadrons, jets, tau-particles and missing transverse energy. TileCal is a scintillator-steel sampling calorimeter and it covers the region of pseudorapidity < 1.7. The scintillation light produced in the scintillator tiles is transmitted by wavelength shifting fibers to photomultiplier tubes (PMTs). The analog signals from the PMTs are amplified, shaped and digitized by sampling the signal every 25 ns. The TileCal frontend electronics reads out the signals produced by about 10000 channels measuring energies ranging from ~30 MeV to ~2 TeV. Each stage of the signal production from scintillation light to the signal reconstruction is monitored and calibrated. The performance of the calorimeter has been studied in-situ employing cosmic ray muons and a large sample of proton-proton collisions acquired during the operations of the LHC. Prompt isolated muons of high momentum fro...

  2. Performance of the ATLAS hadronic Tile calorimeter

    CERN Document Server

    Mlynarikova, Michaela; The ATLAS collaboration

    2017-01-01

    The Tile Calorimeter (TileCal) of the ATLAS experiment at the LHC is the central hadronic calorimeter designed for reconstruction of hadrons, jets, tau-particles and missing transverse energy. TileCal is a scintillator-steel sampling calorimeter and it covers the region of pseudorapidity < 1.7. The scintillation light produced in the scintillator tiles is transmitted by wavelength shifting fibers to photomultiplier tubes (PMTs). The analog signals from the PMTs are amplified, shaped and digitized by sampling the signal every 25 ns. The TileCal frontend electronics reads out the signals produced by about 10000 channels measuring energies ranging from ~30 MeV to ~2 TeV. Each stage of the signal production from scintillation light to the signal reconstruction is monitored and calibrated. The performance of the calorimeter has been studied in-situ employing cosmic ray muons and a large sample of proton-proton collisions acquired during the operations of the LHC. Prompt isolated muons of high momentum from elec...

  3. Comparison of performance of tile drainage routines in SWAT 2009 and 2012 in an extensively tile-drained watershed in Midwest

    Science.gov (United States)

    Subsurface tile drainage systems are widely used in agricultural watersheds in the Midwestern U.S. Tile drainage systems enable the Midwest area to become highly productive agricultural lands, but can also create environmental problems, for example nitrate-N contamination associated with drainage w...

  4. Tile Patterns with Logo--Part I: Laying Tile with Logo.

    Science.gov (United States)

    Clason, Robert G.

    1990-01-01

    Described is a method for drawing periodic tile patterns using LOGO. Squares, triangles, hexagons, shape filling, and random tile laying are included. These activities incorporate problem solving, programing methods, and the geometry of angles and polygons. (KR)

  5. The Mu3e Tile Detector

    Energy Technology Data Exchange (ETDEWEB)

    Eckert, Hans Patrick

    2015-05-06

    The Mu3e experiment is designed to search for the lepton flavour violating decay μ→e{sup +}e{sup +}e{sup -} with a sensitivity of one in 10{sup 16} decays. An observation of such a decay would be a clear sign of physics beyond the Standard Model. Achieving the targeted sensitivity requires a high precision detector with excellent momentum, vertex and time resolution. The Mu3e Tile Detector is a highly granular sub-detector system based on scintillator tiles with Silicon Photomultiplier (SiPM) readout, and aims at measuring the timing of the muon decay products with a resolution of better than 100 ps. This thesis describes the development of the Tile Detector concept and demonstrates the feasibility of the elaborated design. In this context, a comprehensive simulation framework has been developed, in order to study and optimise the detector performance. The central component of this framework is a detailed simulation of the SiPM response. The simulation model has been validated in several measurements and shows good agreement with the data. Furthermore, a 16-channel prototype of a Tile Detector module has been constructed and operated in an electron beam. In the beam tests, a time resolution up to 56 ps has been achieved, which surpasses the design goal. The simulation and measurement results demonstrate the feasibility of the developed Tile Detector design and show that the required detector performance can be achieved.

  6. A comparative analysis of DNA barcode microarray feature size

    Directory of Open Access Journals (Sweden)

    Smith Andrew M

    2009-10-01

    Full Text Available Abstract Background Microarrays are an invaluable tool in many modern genomic studies. It is generally perceived that decreasing the size of microarray features leads to arrays with higher resolution (due to greater feature density, but this increase in resolution can compromise sensitivity. Results We demonstrate that barcode microarrays with smaller features are equally capable of detecting variation in DNA barcode intensity when compared to larger feature sizes within a specific microarray platform. The barcodes used in this study are the well-characterized set derived from the Yeast KnockOut (YKO collection used for screens of pooled yeast (Saccharomyces cerevisiae deletion mutants. We treated these pools with the glycosylation inhibitor tunicamycin as a test compound. Three generations of barcode microarrays at 30, 8 and 5 μm features sizes independently identified the primary target of tunicamycin to be ALG7. Conclusion We show that the data obtained with 5 μm feature size is of comparable quality to the 30 μm size and propose that further shrinking of features could yield barcode microarrays with equal or greater resolving power and, more importantly, higher density.

  7. Instrumented module of the ATLAS tile calorimeter

    CERN Multimedia

    Laurent Guiraud

    1998-01-01

    The ATLAS tile calorimeter consists of steel absorber plates interspersed with plastic scintillator tiles. Interactions of high-energy hadrons in the plates transform the incident energy into a 'hadronic shower'. When shower particles traverse the scintillating tiles, the latter emit an amount of light proportional to the incident energy. This light is transmitted along readout fibres to a photomultiplier, where a detectable electrical signal is produced. These pictures show one of 64 modules or 'wedges' of the barrel part of the tile calorimeter, which are arranged to form a cylinder around the beam axis. The wedge has been instrumented with scintillators and readout fibres. Photos 03, 06: Checking the routing of the readout fibres into the girder that houses the photomultipliers. Photo 04: A view of the fibre bundles inside the girder.

  8. Performance of the ATLAS Tile Calorimeter

    CERN Document Server

    Hrynevich, Aliaksei; The ATLAS collaboration

    2017-01-01

    The Tile Calorimeter (TileCal) is the central scintillator-steel sampling hadronic calorimeter of the ATLAS experiment at the LHC. Jointly with other calorimeters it is designed for energy reconstruction of hadrons, jets, tau-particles and missing transverse energy. The scintillation light produced in the scintillator tiles is transmitted by wavelength shifting fibers to photomultiplier tubes (PMTs). The analog signals from the PMTs are amplified, shaped and digitized by sampling the signal every 25 ns. The TileCal frontend electronics reads out the signals produced by about 10000 channels measuring energies ranging from ~30 MeV to ~2 TeV. Each stage of the signal production from scintillation light to the signal reconstruction is monitored and calibrated. The performance of the calorimeter has been established with cosmic ray muons and the large sample of the proton-proton collisions. The response of high momentum isolated muons is used to study the energy response at the electromagnetic scale, isolated hadr...

  9. Utilization of hard rock dust with red clay to produce roof tiles

    Directory of Open Access Journals (Sweden)

    Mst. Shanjida Sultana

    2015-03-01

    Full Text Available Utilization of rock dust to produce roof tiles and its effects on properties of tiles, mixed with red clay collected from Naogaon district of Bangladesh were investigated. After proper characterization of the raw materials, tiles were prepared with different percentages of rock dust (10-50% mixed with clay sintered from 850-1100 °C temperature. Rock dust has been found good for using as fluxing material after XRF study. The samples were tested for different properties such as water absorption, porosity, mechanical strength, linear shrinkage, and bulk density. The strength values have exceeded the minimum standard requirement for roof tiles with low water absorption in most samples. The results obtained made it possible to conclude about the possibility of producing roof tiles incorporating up to 40% of rock dust having better properties (lower water absorption 6.5%, strength value 31.97 MPa fired at 900 °C. Therefore these dust acts as a fluxing agent and reducing the sinteringtemperature of the clay material.

  10. The JET belt limiter tiles

    International Nuclear Information System (INIS)

    Deksnis, E.

    1988-09-01

    The belt limiter system, comprising two full toroidal rings of limiter tiles, was installed in JET in 1987. In consists of water-cooled fins with the limiter material in form of tile inbetween. The tiles are designed to absorb heat fluxes during irradiation without the surface temperature exceeding 2000 0 C and to radiate this heat between pulses to the water cooled sink whose temperature is lower than that of the vacuum vessel. An important feature of the design is to maximise the area of the radiating surface facing the water cooled fin. This leads to a tile depth much greater than the width of the tile facing the heat flux. Limiter tiles intercept particles flowing out of the plasma through the area between the two belt limiter rings and through remaining surface area of the plasma column. Power deposition to a limiter tile depends strongly on the shape of the plasma, the edge plasma properties as well as on the surface profile of the tiles. This paper will discuss the methodology that was followed in producing an optimized surface profile of the tiles. This shaped profile has the feature that the resulting power deposition profile is roughly similar for a wide range of plasma parameters. (author)

  11. Seamless stitching of tile scan microscope images.

    Science.gov (United States)

    Legesse, F B; Chernavskaia, O; Heuke, S; Bocklitz, T; Meyer, T; Popp, J; Heintzmann, R

    2015-06-01

    For diagnostic purposes, optical imaging techniques need to obtain high-resolution images of extended biological specimens in reasonable time. The field of view of an objective lens, however, is often smaller than the sample size. To image the whole sample, laser scanning microscopes acquire tile scans that are stitched into larger mosaics. The appearance of such image mosaics is affected by visible edge artefacts that arise from various optical aberrations which manifest in grey level jumps across tile boundaries. In this contribution, a technique for stitching tiles into a seamless mosaic is presented. The stitching algorithm operates by equilibrating neighbouring edges and forcing the brightness at corners to a common value. The corrected image mosaics appear to be free from stitching artefacts and are, therefore, suited for further image analysis procedures. The contribution presents a novel method to seamlessly stitch tiles captured by a laser scanning microscope into a large mosaic. The motivation for the work is the failure of currently existing methods for stitching nonlinear, multimodal images captured by our microscopic setups. Our method eliminates the visible edge artefacts that appear between neighbouring tiles by taking into account the overall illumination differences among tiles in such mosaics. The algorithm first corrects the nonuniform brightness that exists within each of the tiles. It then compensates for grey level differences across tile boundaries by equilibrating neighbouring edges and forcing the brightness at the corners to a common value. After these artefacts have been removed further image analysis procedures can be applied on the microscopic images. Even though the solution presented here is tailored for the aforementioned specific case, it could be easily adapted to other contexts where image tiles are assembled into mosaics such as in astronomical or satellite photos. © 2015 The Authors Journal of Microscopy © 2015 Royal

  12. ATLAS Tile Calorimeter Readout Electronics Upgrade Program for the High Luminosity LHC

    CERN Document Server

    Cerqueira, A S

    2013-01-01

    The Tile Calorimeter (TileCal) is the hadronic calorimeter covering the most central region of the ATLAS experiment at LHC. The TileCal readout consists of about 10000 channels. The ATLAS upgrade program is divided in three phases: The Phase~0 occurs during 2013-2014, Phase~1 during 2018-1019 and finally Phase~2, which is foreseen for 2022-2023, whereafter the peak luminosity will reach 5-7 x 10$^{34}$ cm$^2$s$^{-1}$ (HL-LHC). The main TileCal upgrade is focused on the Phase~2 period. The upgrade aims at replacing the majority of the on- and off-detector electronics so that all calorimeter signals are directly digitized and sent to the off-detector electronics in the counting room. All new electronics must be able to cope with the increased radiation levels. An ambitious upgrade development program is pursued to study different electronics options. Three options are presently being investigated for the front-end electronic upgrade. The first option is an improved version of the present system built using comm...

  13. The ATLAS Tile Calorimeter DCS for Run 2

    CERN Document Server

    Pedro Martins, Filipe Manuel; The ATLAS collaboration

    2016-01-01

    TileCal is one of the ATLAS sub-detectors operating at the Large Hadron Collider (LHC), which is taking data since 2010. The Detector Control System (DCS) was developed to ensure the coherent and safe operation of the whole ATLAS detector. Seventy thousand (70000) parameters are used for control and monitoring purposes of TileCal, requiring an automated system. The TileCal DCS is mainly responsible for the control and monitoring of the high and low voltage systems but it also supervises the detector infrastructure (cooling and racks), calibration systems, data acquisition and safety. During the first period of data taking (Run 1, 2010-12) the TileCal DCS allowed a smooth detector operation and should continue to do so for the second period (Run 2) that started in 2015. The TileCal DCS was updated in order to cope with the hardware and software requirements for Run 2 operation. These updates followed the general ATLAS guidelines on the software and hardware upgrade but also the new requirements from the TileCa...

  14. Brane tilings and their applications

    International Nuclear Information System (INIS)

    Yamazaki, M.

    2008-01-01

    We review recent developments in the theory of brane tilings and four-dimensional N=1 supersymmetric quiver gauge theories. This review consists of two parts. In part I, we describe foundations of brane tilings, emphasizing the physical interpretation of brane tilings as fivebrane systems. In part II, we discuss application of brane tilings to AdS/CFT correspondence and homological mirror symmetry. More topics, such as orientifold of brane tilings, phenomenological model building, similarities with BPS solitons in supersymmetric gauge theories, are also briefly discussed. (Abstract Copyright [2008], Wiley Periodicals, Inc.)

  15. Classification of Voronoi and Delone tiles of quasicrystals: III. Decagonal acceptance window of any size

    International Nuclear Information System (INIS)

    Masakova, Z; Patera, J; Zich, J

    2005-01-01

    This paper is the last of a series of three articles presenting a classification of Vornoi and Delone tilings determined by point sets Σ(Ω) ('quasicrystals'), built by the standard projection of the root lattice of type A 4 to a two-dimensional plane spanned by the roots of the Coxeter group H 2 (dihedral group of order 10). The acceptance window Ω for Σ(Ω) in the present paper is a regular decagon of any radius 0 k , τ = 1/2(1+√5) and k element of Z. The number of Voronoi tiles in different quasicrystal tilings varies between 3 and 12. Similarly, the number of Delone tiles is varying between 4 and 6. There are 7 VT sets of the 'generic' type and 7 of the 'singular' type. The latter occur for seven precise values of the radius of the acceptance window. Quasicrystals with acceptance windows with radii in between these values have constant VT sets, only the relative densities and arrangement of the tiles in the tilings change. Similarly, we distinguish singular and generic sets DT of Delone tiles

  16. Interspecies hybridization on DNA resequencing microarrays: efficiency of sequence recovery and accuracy of SNP detection in human, ape, and codfish mitochondrial DNA genomes sequenced on a human-specific MitoChip

    Directory of Open Access Journals (Sweden)

    Carr Steven M

    2007-09-01

    Full Text Available Abstract Background Iterative DNA "resequencing" on oligonucleotide microarrays offers a high-throughput method to measure intraspecific biodiversity, one that is especially suited to SNP-dense gene regions such as vertebrate mitochondrial (mtDNA genomes. However, costs of single-species design and microarray fabrication are prohibitive. A cost-effective, multi-species strategy is to hybridize experimental DNAs from diverse species to a common microarray that is tiled with oligonucleotide sets from multiple, homologous reference genomes. Such a strategy requires that cross-hybridization between the experimental DNAs and reference oligos from the different species not interfere with the accurate recovery of species-specific data. To determine the pattern and limits of such interspecific hybridization, we compared the efficiency of sequence recovery and accuracy of SNP identification by a 15,452-base human-specific microarray challenged with human, chimpanzee, gorilla, and codfish mtDNA genomes. Results In the human genome, 99.67% of the sequence was recovered with 100.0% accuracy. Accuracy of SNP identification declines log-linearly with sequence divergence from the reference, from 0.067 to 0.247 errors per SNP in the chimpanzee and gorilla genomes, respectively. Efficiency of sequence recovery declines with the increase of the number of interspecific SNPs in the 25b interval tiled by the reference oligonucleotides. In the gorilla genome, which differs from the human reference by 10%, and in which 46% of these 25b regions contain 3 or more SNP differences from the reference, only 88% of the sequence is recoverable. In the codfish genome, which differs from the reference by > 30%, less than 4% of the sequence is recoverable, in short islands ≥ 12b that are conserved between primates and fish. Conclusion Experimental DNAs bind inefficiently to homologous reference oligonucleotide sets on a re-sequencing microarray when their sequences differ by

  17. Performance of the ATLAS hadronic Tile Calorimeter in Run-2 and its upgrade for the High Luminosity LHC

    CERN Document Server

    AUTHOR|(INSPIRE)INSPIRE-00223789; The ATLAS collaboration

    2017-01-01

    The Tile Calorimeter (TileCal) of the ATLAS experiment at the LHC is the central hadronic calorimeter designed for energy reconstruction of hadrons, jets, tauparticles and missing transverse energy. TileCal is a scintillator-steel sampling calorimeter and it covers the region of pseudo-rapidity up to 1.7, with almost 10000 channels measuring energies ranging from ∼30 MeV to ∼2 TeV. Each stage of the signal production, from scintillation light to the signal reconstruction, is monitored and calibrated. The performance of the Tile calorimeter has been studied in-situ employing cosmic ray muons and a large sample of proton-proton collisions, acquired during the operations of the LHC. Prompt isolated muons of high momentum from electroweak bosons decays are employed to study the energy response of the calorimeter at the electromagnetic scale. The calorimeter response to hadronic particles is evaluated with a sample of isolated hadrons. The modelling of the response by the Monte Carlo simulation is discussed. T...

  18. Leaching of dissolved phosphorus from tile-drained agricultural areas.

    Science.gov (United States)

    Andersen, H E; Windolf, J; Kronvang, B

    2016-01-01

    We investigated leaching of dissolved phosphorus (P) from 45 tile-drains representing animal husbandry farms in all regions of Denmark. Leaching of P via tile-drains exhibits a high degree of spatial heterogeneity with a low concentration in the majority of tile-drains and few tile-drains (15% in our investigation) having high to very high concentration of dissolved P. The share of dissolved organic P (DOP) was high (up to 96%). Leaching of DOP has hitherto been a somewhat overlooked P loss pathway in Danish soils and the mechanisms of mobilization and transport of DOP needs more investigation. We found a high correlation between Olsen-P and water extractable P. Water extractable P is regarded as an indicator of risk of loss of dissolved P. Our findings indicate that Olsen-P, which is measured routinely in Danish agricultural soils, may be a useful proxy for the P leaching potential of soils. However, we found no straight-forward correlation between leaching potential of the top soil layer (expressed as either degree of P saturation, Olsen-P or water extractable P) and the measured concentration of dissolved P in the tile-drain. This underlines that not only the source of P but also the P loss pathway must be taken into account when evaluating the risk of P loss.

  19. Tile drainage as karst: Conduit flow and diffuse flow in a tile-drained watershed

    Science.gov (United States)

    Schilling, K.E.; Helmers, M.

    2008-01-01

    The similarity of tiled-drained watersheds to karst drainage basins can be used to improve understanding of watershed-scale nutrient losses from subsurface tile drainage networks. In this study, short-term variations in discharge and chemistry were examined from a tile outlet collecting subsurface tile flow from a 963 ha agricultural watershed. Study objectives were to apply analytical techniques from karst springs to tile discharge to evaluate water sources and estimate the loads of agricultural pollutants discharged from the tile with conduit, intermediate and diffuse flow regimes. A two-member mixing model using nitrate, chloride and specific conductance was used to distinguish rainwater versus groundwater inputs. Results indicated that groundwater comprised 75% of the discharge for a three-day storm period and rainwater was primarily concentrated during the hydrograph peak. A contrasting pattern of solute concentrations and export loads was observed in tile flow. During base flow periods, tile flow consisted of diffuse flow from groundwater sources and contained elevated levels of nitrate, chloride and specific conductance. During storm events, suspended solids and pollutants adhered to soil surfaces (phosphorus, ammonium and organic nitrogen) were concentrated and discharged during the rapid, conduit flow portion of the hydrograph. During a three-day period, conduit flow occurred for 5.6% of the time but accounted for 16.5% of the total flow. Nitrate and chloride were delivered primarily with diffuse flow (more than 70%), whereas 80-94% of total suspended sediment, phosphorus and ammonium were exported with conduit and intermediate flow regimes. Understanding the water sources contributing to tile drainage and the manner by which pollutant discharge occurs from these systems (conduit, intermediate or diffuse flow) may be useful for designing, implementing and evaluating non-point source reduction strategies in tile-drained landscapes. ?? 2007 Elsevier B.V. All

  20. Allowable heat load on the edge of the ITER first wall panel beryllium flat tiles

    Directory of Open Access Journals (Sweden)

    R. Mitteau

    2017-08-01

    Full Text Available Plasma facing components are usually qualified to a given heat load density applied at the top face of the armour tiles with normal incidence angle. When employed in tokamak fusion machines, heat loading on the tile sides is possible due to optimised shaping, that doesn't provide edge shadowing for all design situations. An edge heat load may occur both at the tile and component scales. The edge load needs to be controlled and quantified. The adequate control of edge heat loads is especially critical for water cooled components that uses armour tiles which are bonded to the heat sink, for ensuring the long-term integrity of the tile bonding. An edge heat load allowance criterion of 10% of the top heat load is proposed. The 10% criterion is supported by experimental heat flux tests.

  1. Comparison of performance of tile drainage routines in SWAT 2009 and 2012 in an extensively tile-drained watershed in the Midwest

    Directory of Open Access Journals (Sweden)

    T. Guo

    2018-01-01

    Full Text Available Subsurface tile drainage systems are widely used in agricultural watersheds in the Midwestern US and enable the Midwest area to become highly productive agricultural lands, but can also create environmental problems, for example nitrate-N contamination associated with drainage waters. The Soil and Water Assessment Tool (SWAT has been used to model watersheds with tile drainage. SWAT2012 revisions 615 and 645 provide new tile drainage routines. However, few studies have used these revisions to study tile drainage impacts at both field and watershed scales. Moreover, SWAT2012 revision 645 improved the soil moisture based curve number calculation method, which has not been fully tested. This study used long-term (1991–2003 field site and river station data from the Little Vermilion River (LVR watershed to evaluate performance of tile drainage routines in SWAT2009 revision 528 (the old routine and SWAT2012 revisions 615 and 645 (the new routine. Both the old and new routines provided reasonable but unsatisfactory (NSE  <  0.5 uncalibrated flow and nitrate loss results for a mildly sloped watershed with low runoff. The calibrated monthly tile flow, surface flow, nitrate-N in tile and surface flow, sediment and annual corn and soybean yield results from SWAT with the old and new tile drainage routines were compared with observed values. Generally, the new routine provided acceptable simulated tile flow (NSE  =  0.48–0.65 and nitrate in tile flow (NSE  =  0.48–0.68 for field sites with random pattern tile and constant tile spacing, while the old routine simulated tile flow and nitrate in tile flow results for the field site with constant tile spacing were unacceptable (NSE  =  0.00–0.32 and −0.29–0.06, respectively. The new modified curve number calculation method in revision 645 (NSE  =  0.50–0.81 better simulated surface runoff than revision 615 (NSE  =  −0.11–0.49. The calibration

  2. Upgrading the ATLAS Tile Calorimeter electronics

    CERN Document Server

    Oreglia, M; The ATLAS collaboration

    2013-01-01

    The Tile Calorimeter (TileCal) is the hadronic calorimeter covering the most central region of the ATLAS experiment at LHC. The TileCal readout consists of about 10000 channels. The main upgrade will occur for the High Luminosity LHC phase (phase 2) which is scheduled around 2022. The upgrade aims at replacing the majority of the on- and off- detector electronics so that all calorimeter signals are directly digitized and sent to the off-detector electronics in the counting room. An ambitious upgrade development program is pursued studying different electronics options. Three different options are presently being investigated for the front-end electronic upgrade. Which one to use will be decided after extensive test beam studies. High speed optical links are used to read out all digitized data to the counting room. For the off-detector electronics a new back-end architecture is being developed, including the initial trigger processing and pipeline memories. A demonstrator prototype read-out for a slice of the ...

  3. The Plasmodium falciparum Sexual Development Transcriptome: A Microarray Analysis using Ontology-Based Pattern Identification

    National Research Council Canada - National Science Library

    Young, Jason A; Fivelman, Quinton L; Blair, Peter L; de la Vega, Patricia; Le Roch, Karine G; Zhou, Yingyao; Carucci, Daniel J; Baker, David A; Winzeler, Elizabeth A

    2005-01-01

    ... a full-genome high-density oligonucleotide microarray. The interpretation of this transcriptional data was aided by applying a novel knowledge-based data-mining algorithm termed ontology-based pattern identification (OPI...

  4. An Effective NoSQL-Based Vector Map Tile Management Approach

    Directory of Open Access Journals (Sweden)

    Lin Wan

    2016-11-01

    Full Text Available Within a digital map service environment, the rapid growth of Spatial Big-Data is driving new requirements for effective mechanisms for massive online vector map tile processing. The emergence of Not Only SQL (NoSQL databases has resulted in a new data storage and management model for scalable spatial data deployments and fast tracking. They better suit the scenario of high-volume, low-latency network map services than traditional standalone high-performance computer (HPC or relational databases. In this paper, we propose a flexible storage framework that provides feasible methods for tiled map data parallel clipping and retrieval operations within a distributed NoSQL database environment. We illustrate the parallel vector tile generation and querying algorithms with the MapReduce programming model. Three different processing approaches, including local caching, distributed file storage, and the NoSQL-based method, are compared by analyzing the concurrent load and calculation time. An online geological vector tile map service prototype was developed to embed our processing framework in the China Geological Survey Information Grid. Experimental results show that our NoSQL-based parallel tile management framework can support applications that process huge volumes of vector tile data and improve performance of the tiled map service.

  5. A High-Resolution Tile-Based Approach for Classifying Biological Regions in Whole-Slide Histopathological Images.

    Science.gov (United States)

    Hoffman, R A; Kothari, S; Phan, J H; Wang, M D

    Computational analysis of histopathological whole slide images (WSIs) has emerged as a potential means for improving cancer diagnosis and prognosis. However, an open issue relating to the automated processing of WSIs is the identification of biological regions such as tumor, stroma, and necrotic tissue on the slide. We develop a method for classifying WSI portions (512x512-pixel tiles) into biological regions by (1) extracting a set of 461 image features from each WSI tile, (2) optimizing tile-level prediction models using nested cross-validation on a small (600 tile) manually annotated tile-level training set, and (3) validating the models against a much larger (1.7x10 6 tile) data set for which ground truth was available on the whole-slide level. We calculated the predicted prevalence of each tissue region and compared this prevalence to the ground truth prevalence for each image in an independent validation set. Results show significant correlation between the predicted (using automated system) and reported biological region prevalences with p < 0.001 for eight of nine cases considered.

  6. Characterization of the effect of sample quality on high density oligonucleotide microarray data using progressively degraded rat liver RNA

    Directory of Open Access Journals (Sweden)

    Rosenzweig Barry A

    2007-09-01

    Full Text Available Abstract Background The interpretability of microarray data can be affected by sample quality. To systematically explore how RNA quality affects microarray assay performance, a set of rat liver RNA samples with a progressive change in RNA integrity was generated by thawing frozen tissue or by ex vivo incubation of fresh tissue over a time course. Results Incubation of tissue at 37°C for several hours had little effect on RNA integrity, but did induce changes in the transcript levels of stress response genes and immune cell markers. In contrast, thawing of tissue led to a rapid loss of RNA integrity. Probe sets identified as most sensitive to RNA degradation tended to be located more than 1000 nucleotides upstream of their transcription termini, similar to the positioning of control probe sets used to assess sample quality on Affymetrix GeneChip® arrays. Samples with RNA integrity numbers less than or equal to 7 showed a significant increase in false positives relative to undegraded liver RNA and a reduction in the detection of true positives among probe sets most sensitive to sample integrity for in silico modeled changes of 1.5-, 2-, and 4-fold. Conclusion Although moderate levels of RNA degradation are tolerated by microarrays with 3'-biased probe selection designs, in this study we identify a threshold beyond which decreased specificity and sensitivity can be observed that closely correlates with average target length. These results highlight the value of annotating microarray data with metrics that capture important aspects of sample quality.

  7. Assessment of centrifugation using for accelerated immunological microarray analysis for blood cells investigation

    Directory of Open Access Journals (Sweden)

    A. V. Shishkin

    2011-01-01

    Full Text Available Phase of incubation microarray with cell suspension is prolonged when cells are investigated. It takes from 20 to 60 min if cell sedimentation on the surface of microarray is the result of gravity . Decrease of this stage duration is possible due to centrifugation. In th is article influence of centrifugation on results of analysis is considered. Changes of morphological description of cells are estimated when they a re precipitatedwith different acceleration. Also availability of centrifugation using when it is necessary to obtain the high density of cell binding in test regions of microarray if cells concentration in sample is small is demonstrated.

  8. Upgrade of the ATLAS Hadronic Tile Calorimeter for the High Luminosity LHC

    CERN Document Server

    Hildebrand, Kevin; The ATLAS collaboration

    2017-01-01

    The Tile Calorimeter is the hadronic calorimeter covering the central region of the ATLAS detector at the Large Hadron Collider. It is a scintillator-steel sampling calorimeter read out via wavelength shifting fibers coupled to photomultiplier tubes (PMT). The PMT signals are digitized and stored on detector until a trigger is received. The Large Hadron Collider (LHC) has envisaged a series of upgrades towards a High Luminosity LHC (HL-LHC) delivering five times the LHC nominal instantaneous luminosity. The ATLAS Phase II upgrade (2024-2025) will accommodate the upgrade of the detector and data acquisition system for the HL-LHC. In particular, TileCal will undergo a major replacement of its on- and off-detector electronics. In the new architecture, all signals will be digitized and then transferred directly to the off-detector electronics, where the signals will be reconstructed, stored, and sent to the first level of trigger at the rate of 40 MHz. This will provide better precision of the calorimeter signals...

  9. Upgrade of the ATLAS Hadronic Tile Calorimeter for the High Luminosity LHC

    CERN Document Server

    Hildebrand, Kevin; The ATLAS collaboration

    2017-01-01

    The Tile Calorimeter is the hadronic calorimeter covering the central region of the ATLAS detector at the Large Hadron Collider. It is a scintillator-steel sampling calorimeter read out via wavelength shifting fibers coupled to photomultiplier tubes (PMT). . The Large Hadron Collider (LHC) has envisaged a series of upgrades towards a High Luminosity LHC (HL-LHC) delivering five times the LHC nominal instantaneous luminosity. The ATLAS Phase II upgrade (2024-2025) will accommodate the upgrade of the detector and data acquisition system for the HL-LHC. In particular, TileCal will undergo a major replacement of its on- and off-detector electronics. In the new architecture, all signals will be digitized and sent to the first level of trigger at the rate of 40 MHz. This will provide better precision of the calorimeter signals used by the trigger system and will allow the development of more complex trigger algorithms. Changes to the electronics will also contribute to the reliability and redundancy of the system. ...

  10. Kinetics of DNA tile dimerization.

    Science.gov (United States)

    Jiang, Shuoxing; Yan, Hao; Liu, Yan

    2014-06-24

    Investigating how individual molecular components interact with one another within DNA nanoarchitectures, both in terms of their spatial and temporal interactions, is fundamentally important for a better understanding of their physical behaviors. This will provide researchers with valuable insight for designing more complex higher-order structures that can be assembled more efficiently. In this report, we examined several spatial factors that affect the kinetics of bivalent, double-helical (DH) tile dimerization, including the orientation and number of sticky ends (SEs), the flexibility of the double helical domains, and the size of the tiles. The rate constants we obtained confirm our hypothesis that increased nucleation opportunities and well-aligned SEs accelerate tile-tile dimerization. Increased flexibility in the tiles causes slower dimerization rates, an effect that can be reversed by introducing restrictions to the tile flexibility. The higher dimerization rates of more rigid tiles results from the opposing effects of higher activation energies and higher pre-exponential factors from the Arrhenius equation, where the pre-exponential factor dominates. We believe that the results presented here will assist in improved implementation of DNA tile based algorithmic self-assembly, DNA based molecular robotics, and other specific nucleic acid systems, and will provide guidance to design and assembly processes to improve overall yield and efficiency.

  11. ATLAS Tile Calorimeter Readout Electronics Upgrade Program for the High Luminosity LHC

    CERN Document Server

    Cerqueira, A S; The ATLAS collaboration

    2013-01-01

    The Tile Calorimeter (TileCal) is the hadronic calorimeter covering the most central region of the ATLAS experiment at LHC. The TileCal readout consists of about 10000 channels. The ATLAS upgrade program is divided in three phases: The Phase 0 occurs during 2013-2014 and prepares the LHC to reach peak luminosities of 1034 cm2s-1; Phase 1, foreseen for 2018-1019, prepares the LHC for peak luminosity up to 2-3 x 1034 cm2s-1, corresponding to 55 to 80 interactions per bunch-crossing with 25 ns bunch interval; and Phase 2 is foreseen for 2022-2023, whereafter the peak luminosity will reach 5-7 x 1034 cm2s-1 (HL-LHC). With luminosity leveling, the average luminosity will increase with a factor 10. The main TileCal upgrade is focused on the HL-LHC period. The upgrade aims at replacing the majority of the on- and off-detector electronics so that all calorimeter signals are directly digitized and sent to the off-detector electronics in the counting room. All new electronics must be able to cope with the increased rad...

  12. Upgrade of the ATLAS Tile Calorimeter

    CERN Document Server

    Reed, Robert; The ATLAS collaboration

    2014-01-01

    The Tile Calorimeter (TileCal) is the main hadronic calorimeter covering the central region of the ATLAS experiment at LHC. TileCal readout consists of about 10000 channels. The bulk of its upgrade will occur for the High Luminosity LHC operation (Phase 2 around 2023) where the peak luminosity will increase 5x compared to the design luminosity (10^{34} cm^{-2}s^{-1}) but with maintained energy (i.e. 7+7 TeV). The TileCal upgrade aims to replace the majority of the on- and off-detector electronics so that all calorimeter signals can be digitized and directly sent to the off-detector electronics in the counting room. This will reduce pile-up problems and allow more complex trigger algorithms. To achieve the required reliability, redundancy has been introduced at different levels. Three different options are presently being investigated for the front-end electronic upgrade. Extensive test beam studies will determine which option will be selected. 10 Gbps optical links are used to read out all digitized data to t...

  13. Upgrade of the ATLAS Tile Calorimeter

    CERN Document Server

    Moreno, P; The ATLAS collaboration

    2016-01-01

    The Tile Calorimeter (TileCal) is the central hadronic calorimeter covering the central region of the ATLAS experiment at LHC. The TileCal readout consists of about 10000 channels. The bulk of its upgrade will occur for the High Luminosity LHC phase (Phase 2) where the peak luminosity will increase 5$\\times$ compared to the design luminosity ($10^{34} cm^{-2}s^{-1}$) but with maintained energy (i.e. 7+7 TeV). The TileCal upgrade aims at replacing the majority of the on- and off-detector electronics to the extent that all calorimeter signals will be digitized and sent to the off-detector electronics in the counting room. To achieve the required reliability, redundancy has been introduced at different levels. Three different options are presently being investigated for the front-end electronic upgrade. Extensive test beam studies will determine which option will be selected. 10 Gbps optical links are used to read out all digitized data to the counting room while 5 Gbps down-links are used for synchronization, c...

  14. Upgrading the ATLAS Tile Calorimeter Electronics

    CERN Document Server

    Popeneciu, G; The ATLAS collaboration

    2014-01-01

    The Tile Calorimeter (TileCal) is the central hadronic calorimeter of the ATLAS experiment at LHC. Around 2023, after the upgrade of the LHC (High Luminosity LHC, phase 2) the peak luminosity will increase by a factor of 5 compared to the design value (1034 cm-2 s-1), thus requiring an upgrade of the TileCal readout electronics. Except the 9852 photomultipliers (PMTs), most of the on- and off-detector electronics will be replaced, with the aim of digitizing all PMT pulses at 40 MHz at the front-end level and sending them with 10 Gbps optical links to the back-end electronics. Moreover, to increase reliability, redundancy will be introduced at different levels. Three different options are currently being investigated for the front-end electronics and extensive test beam studies are planned to select the best option. One demonstrator prototype module is also planned to be inserted in TileCal in 2014 that will include hybrid electronic components able to probe the new design, but still compatible with the presen...

  15. Study of the hadron shower profiles with the ATLAS tile hadron calorimeter

    International Nuclear Information System (INIS)

    Budagov, Yu.A.; Rusakovich, N.A.; Vinogradov, V.B.; Kul'chitskij, Yu.A.; Rumyantsev, V.S.; Nessi, M.

    1997-01-01

    The lateral and longitudinal profiles of the hadronic showers detected by ATLAS iron-scintillator tile hadron calorimeter with longitudinal tile configuration have been investigated. The results are based on 100 GeV pion beam data. Due to the beam scan provided many different beam impact locations with cells it is succeeded to obtain detailed picture of transverse shower behavior. The underlying radial energy densities for four depths and for overall calorimeter have been reconstructed. The three-dimensional hadronic shower parametrization has been suggested

  16. ArrayPitope: Automated Analysis of Amino Acid Substitutions for Peptide Microarray-Based Antibody Epitope Mapping

    DEFF Research Database (Denmark)

    Hansen, Christian Skjødt; Østerbye, Thomas; Marcatili, Paolo

    2017-01-01

    -reactivity. B cell epitopes are typically classified as either linear epitopes, i.e. short consecutive segments from the protein sequence or conformational epitopes adapted through native protein folding. Recent advances in high-density peptide microarrays enable high-throughput, high-resolution identification...

  17. Numerical Study of High Heat Flux Performances of Flat-Tile Divertor Mock-ups with Hypervapotron Cooling Concept

    International Nuclear Information System (INIS)

    Chen Lei; Liu Xiang; Lian Youyun; Cai Laizhong

    2015-01-01

    The hypervapotron (HV), as an enhanced heat transfer technique, will be used for ITER divertor components in the dome region as well as the enhanced heat flux first wall panels. W-Cu brazing technology has been developed at SWIP (Southwestern Institute of Physics), and one W/CuCrZr/316LN component of 450 mm×52 mm×166 mm with HV cooling channels will be fabricated for high heat flux (HHF) tests. Before that a relevant analysis was carried out to optimize the structure of divertor component elements. ANSYS-CFX was used in CFD analysis and ABAQUS was adopted for thermal–mechanical calculations. Commercial code FE-SAFE was adopted to compute the fatigue life of the component. The tile size, thickness of tungsten tiles and the slit width among tungsten tiles were optimized and its HHF performances under International Thermonuclear Experimental Reactor (ITER) loading conditions were simulated. One brand new tokamak HL-2M with advanced divertor configuration is under construction in SWIP, where ITER-like flat-tile divertor components are adopted. This optimized design is expected to supply valuable data for HL-2M tokamak. (paper)

  18. Performance of the ATLAS Tile Calorimeter

    Science.gov (United States)

    Hrynevich, A.

    2017-06-01

    The Tile Calorimeter (TileCal) is the central scintillator-steel sampling hadronic calorimeter of the ATLAS experiment at the LHC . Jointly with other calorimeters it is designed for energy reconstruction of hadrons, jets, tau-particles and missing transverse energy. The scintillation light produced in the scintillator tiles is transmitted by wavelength shifting fibers to photomultiplier tubes (PMTs). The analog signals from the PMTs are amplified, shaped and digitized by sampling the signal every 25 ns. The TileCal frontend electronics reads out the signals produced by about 10000 channels measuring energies ranging from ~30 MeV to ~2 TeV . Each stage of the signal production from scintillation light to the signal reconstruction is monitored and calibrated. The performance of the calorimeter has been established with cosmic ray muons and the large sample of the proton-proton collisions. The response of high momentum isolated muons is used to study the energy response at the electromagnetic scale, isolated hadrons are used as a probe of the hadronic response and its modelling by the Monte Carlo simulations. The calorimeter time resolution is studied with multijet events. Results on the calorimeter operation and performance are presented, including the calibration, stability, absolute energy scale, uniformity and time resolution. These results show that the TileCal performance is within the design requirements and has given essential contribution to reconstructed objects and physics results.

  19. Tile-Packing Tomography Is NP-hard

    DEFF Research Database (Denmark)

    Chrobak, Marek; Dürr, Christoph; Guíñez, Flavio

    2010-01-01

    Discrete tomography deals with reconstructing finite spatial objects from their projections. The objects we study in this paper are called tilings or tile-packings, and they consist of a number of disjoint copies of a fixed tile, where a tile is defined as a connected set of grid points. A row...

  20. Geometrical tile design for complex neighborhoods.

    Science.gov (United States)

    Czeizler, Eugen; Kari, Lila

    2009-01-01

    Recent research has showed that tile systems are one of the most suitable theoretical frameworks for the spatial study and modeling of self-assembly processes, such as the formation of DNA and protein oligomeric structures. A Wang tile is a unit square, with glues on its edges, attaching to other tiles and forming larger and larger structures. Although quite intuitive, the idea of glues placed on the edges of a tile is not always natural for simulating the interactions occurring in some real systems. For example, when considering protein self-assembly, the shape of a protein is the main determinant of its functions and its interactions with other proteins. Our goal is to use geometric tiles, i.e., square tiles with geometrical protrusions on their edges, for simulating tiled paths (zippers) with complex neighborhoods, by ribbons of geometric tiles with simple, local neighborhoods. This paper is a step toward solving the general case of an arbitrary neighborhood, by proposing geometric tile designs that solve the case of a "tall" von Neumann neighborhood, the case of the f-shaped neighborhood, and the case of a 3 x 5 "filled" rectangular neighborhood. The techniques can be combined and generalized to solve the problem in the case of any neighborhood, centered at the tile of reference, and included in a 3 x (2k + 1) rectangle.

  1. Upgrade of the ATLAS Tile Calorimeter Electronics

    CERN Document Server

    Carrio, F

    2015-01-01

    The Tile Calorimeter (TileCal) is the hadronic calorimeter covering the central region of the ATLAS experiment at LHC. The TileCal readout consists of about 10000 channels. The bulk of its upgrade will occur for the High Luminosity LHC phase (P hase - II ) where the pea k luminosity will increase 5 times compared to the design luminosity (10 34 cm −2 s −1 ) but with maintained energy (i.e. 7+7 TeV). An additional increase of the average luminosity with a factor of 2 can be achieved by luminosity levelling. This upgrade is expe cted to happen around 202 4 . The TileCal upgrade aims at replacing the majority of the on - and off - detector electronics to the extent that all calorimeter signals will be digitized and sent to the off - detector electronics in the counting room. To achieve th e required reliability, redundancy has been introduced at different levels. Three different options are presently being investiga...

  2. Gamma radiation scanning of nuclear waste storage tile holes

    International Nuclear Information System (INIS)

    Das, A.; Yue, S.; Sur, B.; Johnston, J.; Gaudet, M.; Wright, M.; Burton, N.

    2010-01-01

    Nuclear waste management facilities at Chalk River Laboratories use below-ground 'tile holes' to store solid waste from various activities such as medical radioisotope production. A silicon PIN (p-type-intrinsic-n-type semiconductor) diode based gamma radiation scanning system has been developed and used to profile the gamma radiation fields along the depth of waste storage tile holes by deploying the sensor into verification tubes adjacent to the tile holes themselves. The radiation field measurements were consistent with expected radiation fields in the tile holes based on administrative knowledge of the radioactive contents and their corresponding decay rates. Such measurements allow non-invasive verification of tile hole contents and provide input to the assessment of radiological risk associated with removal of the waste. Using this detector system, radioactive waste that has decayed to very low levels may be identified based on the radiation profile. This information will support planning for possible transfer of this waste to a licensed waste storage facility designed for low level waste, thus freeing storage space for possible tile hole re-use for more highly radioactive waste. (author)

  3. Spectral response data for development of cool coloured tile coverings

    Science.gov (United States)

    Libbra, Antonio; Tarozzi, Luca; Muscio, Alberto; Corticelli, Mauro A.

    2011-03-01

    Most ancient or traditional buildings in Italy show steep-slope roofs covered by red clay tiles. As the rooms immediately below the roof are often inhabited in historical or densely urbanized centres, the combination of low solar reflectance of tile coverings and low thermal inertia of either wooden roof structures or sub-tile insulation panels makes summer overheating a major problem. The problem can be mitigated by using tiles coated with cool colours, that is colours with the same spectral response of clay tiles in the visible, but highly reflecting in the near infrared range, which includes more than half of solar radiation. Cool colours can yield the same visible aspect of common building surfaces, but higher solar reflectance. Studies aimed at developing cool colour tile coverings for traditional Italian buildings have been started. A few coating solutions with the typical red terracotta colour have been produced and tested in the laboratory, using easily available materials. The spectral response and the solar reflectance have been measured and compared with that of standard tiles.

  4. Hybridization chain reaction amplification for highly sensitive fluorescence detection of DNA with dextran coated microarrays.

    Science.gov (United States)

    Chao, Jie; Li, Zhenhua; Li, Jing; Peng, Hongzhen; Su, Shao; Li, Qian; Zhu, Changfeng; Zuo, Xiaolei; Song, Shiping; Wang, Lianhui; Wang, Lihua

    2016-07-15

    Microarrays of biomolecules hold great promise in the fields of genomics, proteomics, and clinical assays on account of their remarkably parallel and high-throughput assay capability. However, the fluorescence detection used in most conventional DNA microarrays is still limited by sensitivity. In this study, we have demonstrated a novel universal and highly sensitive platform for fluorescent detection of sequence specific DNA at the femtomolar level by combining dextran-coated microarrays with hybridization chain reaction (HCR) signal amplification. Three-dimensional dextran matrix was covalently coated on glass surface as the scaffold to immobilize DNA recognition probes to increase the surface binding capacity and accessibility. DNA nanowire tentacles were formed on the matrix surface for efficient signal amplification by capturing multiple fluorescent molecules in a highly ordered way. By quantifying microscopic fluorescent signals, the synergetic effects of dextran and HCR greatly improved sensitivity of DNA microarrays, with a detection limit of 10fM (1×10(5) molecules). This detection assay could recognize one-base mismatch with fluorescence signals dropped down to ~20%. This cost-effective microarray platform also worked well with samples in serum and thus shows great potential for clinical diagnosis. Copyright © 2016 Elsevier B.V. All rights reserved.

  5. Microarray Analysis of Late Response to Boron Toxicity in Barley (Hordeum vulgare L.) Leaves

    NARCIS (Netherlands)

    Oz, M.T.; Yilmaz, R.; Eyidogan, F.; Graaff, de L.H.; Yucel, M.; Oktem, H.A.

    2009-01-01

    DNA microarrays, being high-density and high-throughput, allow quantitative analyses of thousands of genes and their expression patterns in parallel. In this study, Barley1 GereChip was used to investigate transcriptome changes associated with boron (B) toxicity in a sensitive barley cultivar

  6. The ATLAS Tile Calorimeter DCS for Run 2

    CERN Document Server

    Pedro Martins, Filipe Manuel; The ATLAS collaboration

    2016-01-01

    TileCal is one of the ATLAS subdetectors operating at the Large Hadron Collider (LHC), which is taking data since 2010. Seventy thousand (70000) parameters are used for control and monitoring purposes, requiring an automated system. The Detector Control System (DCS) was developed to ensure the coherent and safe operation of the whole ATLAS detector. The TileCal DCS is mainly responsible for the control and monitoring of the high and low voltage systems but it also supervises the detector infrastructure (cooling and racks), calibration systems, data acquisition and safety. During the first period of data taking (Run 1, 2010-12) the TileCal DCS allowed a smooth detector operation and should continue to do so for the second period (Run 2) that started in 2015. The TileCal DCS was updated in order to cope with the hardware and software requirements for Run 2 operation. These updates followed the general ATLAS guidelines on the software and hardware upgrade but also the new requirements from the TileCal detector. ...

  7. Cross-platform comparison of SYBR® Green real-time PCR with TaqMan PCR, microarrays and other gene expression measurement technologies evaluated in the MicroArray Quality Control (MAQC study

    Directory of Open Access Journals (Sweden)

    Dial Stacey L

    2008-07-01

    Full Text Available Abstract Background The MicroArray Quality Control (MAQC project evaluated the inter- and intra-platform reproducibility of seven microarray platforms and three quantitative gene expression assays in profiling the expression of two commercially available Reference RNA samples (Nat Biotechnol 24:1115-22, 2006. The tested microarrays were the platforms from Affymetrix, Agilent Technologies, Applied Biosystems, GE Healthcare, Illumina, Eppendorf and the National Cancer Institute, and quantitative gene expression assays included TaqMan® Gene Expression PCR Assay, Standardized (Sta RT-PCR™ and QuantiGene®. The data showed great consistency in gene expression measurements across different microarray platforms, different technologies and test sites. However, SYBR® Green real-time PCR, another common technique utilized by half of all real-time PCR users for gene expression measurement, was not addressed in the MAQC study. In the present study, we compared the performance of SYBR Green PCR with TaqMan PCR, microarrays and other quantitative technologies using the same two Reference RNA samples as the MAQC project. We assessed SYBR Green real-time PCR using commercially available RT2 Profiler™ PCR Arrays from SuperArray, containing primer pairs that have been experimentally validated to ensure gene-specificity and high amplification efficiency. Results The SYBR Green PCR Arrays exhibit good reproducibility among different users, PCR instruments and test sites. In addition, the SYBR Green PCR Arrays have the highest concordance with TaqMan PCR, and a high level of concordance with other quantitative methods and microarrays that were evaluated in this study in terms of fold-change correlation and overlap of lists of differentially expressed genes. Conclusion These data demonstrate that SYBR Green real-time PCR delivers highly comparable results in gene expression measurement with TaqMan PCR and other high-density microarrays.

  8. Tritium in the DIII-D carbon tiles

    International Nuclear Information System (INIS)

    Taylor, P.L.; Kellman, A.G.; Lee, R.L.

    1993-06-01

    The amount of tritium in the carbon tiles used as a first wall in the DIII-D tokamak was measured recently when the tiles were removed and cleaned. The measurements were made as part of the task of developing the appropriate safety procedures for processing of the tiles. The surface tritium concentration on the carbon tiles was surveyed and the total tritium released from tile samples was measured in test bakes. The total tritium in all the carbon tiles at the time the tiles were removed for cleaning is estimated to be 15 mCi and the fraction of tritium retained in the tiles from DIII-D operations has a lower bound of 10%. The tritium was found to be concentrated in a narrow surface layer on the plasma facing side of the tile, was fully released when baked to 1,000 degree C, and was released in the form of tritiated gas (DT) as opposed to tritiated water (DTO) when baked

  9. Design and Applications of Rapid Image Tile Producing Software Based on Mosaic Dataset

    Science.gov (United States)

    Zha, Z.; Huang, W.; Wang, C.; Tang, D.; Zhu, L.

    2018-04-01

    Map tile technology is widely used in web geographic information services. How to efficiently produce map tiles is key technology for rapid service of images on web. In this paper, a rapid producing software for image tile data based on mosaic dataset is designed, meanwhile, the flow of tile producing is given. Key technologies such as cluster processing, map representation, tile checking, tile conversion and compression in memory are discussed. Accomplished by software development and tested by actual image data, the results show that this software has a high degree of automation, would be able to effectively reducing the number of IO and improve the tile producing efficiency. Moreover, the manual operations would be reduced significantly.

  10. DESIGN AND APPLICATIONS OF RAPID IMAGE TILE PRODUCING SOFTWARE BASED ON MOSAIC DATASET

    Directory of Open Access Journals (Sweden)

    Z. Zha

    2018-04-01

    Full Text Available Map tile technology is widely used in web geographic information services. How to efficiently produce map tiles is key technology for rapid service of images on web. In this paper, a rapid producing software for image tile data based on mosaic dataset is designed, meanwhile, the flow of tile producing is given. Key technologies such as cluster processing, map representation, tile checking, tile conversion and compression in memory are discussed. Accomplished by software development and tested by actual image data, the results show that this software has a high degree of automation, would be able to effectively reducing the number of IO and improve the tile producing efficiency. Moreover, the manual operations would be reduced significantly.

  11. Numerical Study of High Heat Flux Performances of Flat-Tile Divertor Mock-ups with Hypervapotron Cooling Concept

    Science.gov (United States)

    Chen, Lei; Liu, Xiang; Lian, Youyun; Cai, Laizhong

    2015-09-01

    The hypervapotron (HV), as an enhanced heat transfer technique, will be used for ITER divertor components in the dome region as well as the enhanced heat flux first wall panels. W-Cu brazing technology has been developed at SWIP (Southwestern Institute of Physics), and one W/CuCrZr/316LN component of 450 mm×52 mm×166 mm with HV cooling channels will be fabricated for high heat flux (HHF) tests. Before that a relevant analysis was carried out to optimize the structure of divertor component elements. ANSYS-CFX was used in CFD analysis and ABAQUS was adopted for thermal-mechanical calculations. Commercial code FE-SAFE was adopted to compute the fatigue life of the component. The tile size, thickness of tungsten tiles and the slit width among tungsten tiles were optimized and its HHF performances under International Thermonuclear Experimental Reactor (ITER) loading conditions were simulated. One brand new tokamak HL-2M with advanced divertor configuration is under construction in SWIP, where ITER-like flat-tile divertor components are adopted. This optimized design is expected to supply valuable data for HL-2M tokamak. supported by the National Magnetic Confinement Fusion Science Program of China (Nos. 2011GB110001 and 2011GB110004)

  12. Small regions of overlapping deletions on 6q26 in human astrocytic tumours identified using chromosome 6 tile path array CGH

    Science.gov (United States)

    Ichimura, Koichi; Mungall, Andrew J; Fiegler, Heike; Pearson, Danita M.; Dunham, Ian; Carter, Nigel P; Collins, V. Peter

    2009-01-01

    Deletions of chromosome 6 are a common abnormality in diverse human malignancies including astrocytic tumours, suggesting the presence of tumour suppressor genes (TSG). In order to help identify candidate TSGs, we have constructed a chromosome 6 tile path microarray. The array contains 1780 clones (778 PACs and 1002 BACs) that cover 98.3% of the published chromosome 6 sequences. A total of 104 adult astrocytic tumours (10 diffuse astrocytomas, 30 anaplastic astrocytomas (AA), 64 glioblastomas (GB)) were analysed using this array. Single copy number change was successfully detected and the result was in general concordant with a microsatellite analysis. The pattern of copy number change was complex with multiple interstitial deletions/gains. However, a predominance of telomeric 6q deletions was seen. Two small common and overlapping regions of deletion at 6q26 were identified. One was 1002 kb in size and contained PACRG and QKI, while the second was 199 kb and harbours a single gene, ARID1B. The data show that the chromosome 6 tile path array is useful in mapping copy number changes with high resolution and accuracy. We confirmed the high frequency of chromosome 6 deletions in AA and GB, and identified two novel commonly deleted regions that may harbour TSGs. PMID:16205629

  13. Design of a 2 x 2 scintillating tile package for the SDC barrel electromagnetic tile/fiber calorimeter

    International Nuclear Information System (INIS)

    Hara, K.; Maekoba, H.; Minato, H.; Miyamoto, Y.; Nakano, I.; Okabe, M.; Seiya, Y.; Takano, T.; Takikawa, K.; Yasuoka, K.

    1996-01-01

    We describe R and D results on optical properties of a scintillating tile/fiber system for the SDC barrel electromagnetic calorimeter. The tile/fiber system uses a wavelength shifting fiber to read out the signal of a scintillating plate (tile) and a clear fiber to transmit the signal to a phototube. In the SDC calorimeter design, four of tile/fiber systems are grouped as a 2 x 2 tile package so that the gap width between and the location of the tiles in the absorber slot can be controlled. Optical properties of the tile package such as the light yield, its uniformity, and cross talk were measured in a test bench with a β-ray source and in a 2-GeV/c π + test beam. The performance as an electromagnetic calorimeter was evaluated by a GEANT simulation using the measured response map. We discuss a method of correction for the calorimeter non-uniformity. (orig.)

  14. ALT-II armor tile design for upgraded TEXTOR operation

    International Nuclear Information System (INIS)

    Newberry, B.L.; McGrath, R.T.; Watson, R.D.; Kohlhaas, W.; Finken, K.H.

    1994-01-01

    The upgrade of the TEXTOR tokamak at KFA Juelich was recently completed. This upgrade extended the TEXTOR pulse length from 5 seconds to 10 seconds. The auxiliary heating was increased to a total of 8.0 MW through a combination of neutral beam injection and radio frequency heating. Originally, the inertially cooled armor tiles of the full toroidal belt Advanced Limiter Test -- II (ALT-II) were designed for a 5-second operation with total heating of 6.0 MW. The upgrade of TEXTOR will increase the energy deposited per pulse onto the ALT-II by about 300%. Consequently, the graphite armor tiles for the ALT-II had to be redesigned to avoid excessively high graphite armor surface temperatures that would lead to unacceptable contamination of the plasma. This redesign took the form of two major changes in the ALT-II armor tile geometry. The first design change was an increase of the armor tile thermal mass, primarily by increasing the radial thickness of each tile from 17 mm to 20 mm. This increase in the radial tile dimension reduces the overall pumping efficiency of the ALT-II pump limiter by about 30%. The reduction in exhaust efficiency is unfortunate, but could be avoided only by active cooling of the ALT-II armor tiles. The active cooling option was too complicated and expensive to be considered at this time. The second design change involved redefining the plasma facing surface of each armor tile in order to fully utilize the entire surface area. The incident charged particle heat flux was distributed uniformly over the armor tile surfaces by carefully matching the radial, poloidal and toroidal curvature of each tile to the plasma flow in the TEXTOR boundary layer. This geometry redefinition complicates the manufacturing of the armor tiles, but results in significant thermal performance gains. In addition to these geometry upgrades, several material options were analyzed and evaluated

  15. Run 1 Performance of the ATLAS Tile Calorimeter

    CERN Document Server

    Heelan, Louise; The ATLAS collaboration

    2014-01-01

    The ATLAS Tile hadronic calorimeter (TileCal) provides highly-segmented energy measurements of incoming particles. It is a key detector for the measurement of hadrons, jets, tau leptons and missing transverse energy. It is also useful for identification and reconstruction of muons due to good signal to noise ratio. The calorimeter consists of thin steel plates and 460,000 scintillating tiles configured into 5000 cells, each viewed by two photomultipliers. The calorimeter response and its readout electronics is monitored to better than 1% using radioactive source, laser and charge injection systems. The calibration and performance of the calorimeter have been established through test beam measurements, cosmic ray muons and the large sample of proton-proton collisions acquired in 2011 and 2012. Results on the calorimeter performance are presented, including the absolute energy scale, timing, noise and associated stabilities. The results demonstrate that the Tile Calorimeter has performed well within the design ...

  16. Composite treatment of ceramic tile armor

    Science.gov (United States)

    Hansen, James G. R. [Oak Ridge, TN; Frame, Barbara J [Oak Ridge, TN

    2010-12-14

    An improved ceramic tile armor has a core of boron nitride and a polymer matrix composite (PMC) facing of carbon fibers fused directly to the impact face of the tile. A polyethylene fiber composite backing and spall cover are preferred. The carbon fiber layers are cured directly onto the tile, not adhered using a separate adhesive so that they are integral with the tile, not a separate layer.

  17. Upgrade of the ATLAS Tile Calorimeter Electronics

    CERN Document Server

    Moreno, P; The ATLAS collaboration

    2014-01-01

    The Tile Calorimeter (TileCal) is the hadronic calorimeter covering the central region of the ATLAS experiment at LHC. The TileCal readout consists of about 10000 channels. The bulk of its upgrade will occur for the High Luminosity LHC phase (phase 2) where the peak luminosity will increase 5x compared to the design luminosity (10^34 cm−2s−1) but with maintained energy (i.e. 7+7 TeV). An additional increase of the average luminosity with a factor of 2 can be achieved by luminosity leveling. This upgrade is expected to happen around 2023. The TileCal upgrade aims at replacing the majority of the on- and off-detector electronics to the extent that all calorimeter signals will be digitized and sent to the off-detector electronics in the counting room. To achieve the required reliability, redundancy has been introduced at different levels. Three different options are presently being investigated for the front-end electronic upgrade. Extensive test beam studies will determine which option will be selected. 10 ...

  18. Predicting tile drainage discharge

    DEFF Research Database (Denmark)

    Iversen, Bo Vangsø; Kjærgaard, Charlotte; Petersen, Rasmus Jes

    used in the analysis. For the dynamic modelling, a simple linear reservoir model was used where different outlets in the model represented tile drain as well as groundwater discharge outputs. This modelling was based on daily measured tile drain discharge values. The statistical predictive model...... was based on a polynomial regression predicting yearly tile drain discharge values using site specific parameters such as soil type, catchment topography, etc. as predictors. Values of calibrated model parameters from the dynamic modelling were compared to the same site specific parameter as used...

  19. Microstructural characterization of ceramic floor tiles with the incorporation of wastes from ceramic tile industries

    Directory of Open Access Journals (Sweden)

    Carmeane Effting

    2010-09-01

    Full Text Available Ceramic floor tiles are widely used in buildings. In places where people are bare feet, the thermal sensation of cold or hot depends on the environmental conditions and material properties including its microstructure and crustiness surface. The introduction of the crustiness surface on the ceramic floor tiles interfere in the contact temperature and also it can be an strategy to obtain ceramic tiles more comfortable. In this work, porous ceramic tiles were obtained by pressing an industrial atomized ceramic powder incorporated with refractory raw material (residue from porcelainized stoneware tile polishing and changing firing temperature. Raw materials and obtained compacted samples were evaluated by chemical analysis, scanning electron microscopy (SEM, energy-dispersive spectrometry (EDS, thermogravimetric analysis (TGA, and differential thermal analysis (DTA. Thermal (thermal conductivity and effusivity and physical (porosity measurements were also evaluated.

  20. Quality control in tile production

    Science.gov (United States)

    Kalviainen, Heikki A.; Kukkonen, Saku; Hyvarinen, Timo S.; Parkkinen, Jussi P. S.

    1998-10-01

    This work studies visual quality control in ceramics industry. In tile manufacturing, it is important that in each set of tiles, every single tile looks similar. For example, the tiles should have similar color and texture. Our goal is to design a machine vision system that can estimate the sufficient similarity or same appearance to the human eye. Currently, the estimation is usually done by human vision. Differing from other approaches our aim is to use accurate spectral representation of color, and we are comparing spectral features to the RGB color features. A laboratory system for color measurement is built. Experimentations with five classes of brown tiles are presented. We use chromaticity RGB features and several spectral features for classification with the k-NN classifier and with a neural network, called Self-Organizing Map. We can classify many of the tiles but there are several problems that need further investigations: larger training and test sets are needed, illuminations effects must be studied further, and more suitable spectral features are needed with more sophisticated classifiers. It is also interesting to develop further the neural approach.

  1. Chromosomal microarrays testing in children with developmental disabilities and congenital anomalies

    Directory of Open Access Journals (Sweden)

    Guillermo Lay-Son

    2015-04-01

    Full Text Available OBJECTIVES: Clinical use of microarray-based techniques for the analysis of many developmental disorders has emerged during the last decade. Thus, chromosomal microarray has been positioned as a first-tier test. This study reports the first experience in a Chilean cohort. METHODS: Chilean patients with developmental disabilities and congenital anomalies were studied with a high-density microarray (CytoScan(tm HD Array, Affymetrix, Inc., Santa Clara, CA, USA. Patients had previous cytogenetic studies with either a normal result or a poorly characterized anomaly. RESULTS: This study tested 40 patients selected by two or more criteria, including: major congenital anomalies, facial dysmorphism, developmental delay, and intellectual disability. Copy number variants (CNVs were found in 72.5% of patients, while a pathogenic CNV was found in 25% of patients and a CNV of uncertain clinical significance was found in 2.5% of patients. CONCLUSION: Chromosomal microarray analysis is a useful and powerful tool for diagnosis of developmental diseases, by allowing accurate diagnosis, improving the diagnosis rate, and discovering new etiologies. The higher cost is a limitation for widespread use in this setting.

  2. ASBESTOS EXPOSURES DURING ROUTINE FLOOR TILE MAINTENANCE. PART 2: ULTRA HIGH SPEED BURNISHING AND WET-STRIPPING

    Science.gov (United States)

    This study was conducted to evaluate airborne asbestos concentrations during ultra high speed (UHS) burnishing and wet-stripping of asbestos-containing resilient floor tile under two levels of floor care condition (poor and good). Airborne asbestos concentrations were measured by...

  3. Development of high conductive C/C composite tiles for plasma facing armor

    International Nuclear Information System (INIS)

    Ioki, K.; Namiki, K.; Tsujimura, S.; Toyoda, M.; Seki, M.; Takatsu, H.

    1991-01-01

    C/C composites with high thermal conductivity were developed in unidirectional, two-dimensional and felt types, and were fabricated as full-scale armor tile. Their thermal conductivity in the direction perpendicular to the plasma-side surface is 250∝550 W/mdeg C, that is comparable to that of pyrolytic graphite. It was shown by heat load tests that the C/C composites have low surface erosion characteristics and high thermal shock resistance. Various kinds of C/C composites were successfully bonded to metal substrate, and their mechanical strength and thermal shock resistance were tested. (orig.)

  4. A Customized DNA Microarray for Microbial Source Tracking ...

    Science.gov (United States)

    It is estimated that more than 160, 000 miles of rivers and streams in the United States are impaired due to the presence of waterborne pathogens. These pathogens typically originate from human and other animal fecal pollution sources; therefore, a rapid microbial source tracking (MST) method is needed to facilitate water quality assessment and impaired water remediation. We report a novel qualitative DNA microarray technology consisting of 453 probes for the detection of general fecal and host-associated bacteria, viruses, antibiotic resistance, and other environmentally relevant genetic indicators. A novel data normalization and reduction approach is also presented to help alleviate false positives often associated with high-density microarray applications. To evaluate the performance of the approach, DNA and cDNA was isolated from swine, cattle, duck, goose and gull fecal reference samples, as well as soiled poultry liter and raw municipal sewage. Based on nonmetric multidimensional scaling analysis of results, findings suggest that the novel microarray approach may be useful for pathogen detection and identification of fecal contamination in recreational waters. The ability to simultaneously detect a large collection of environmentally important genetic indicators in a single test has the potential to provide water quality managers with a wide range of information in a short period of time. Future research is warranted to measure microarray performance i

  5. Microarray expression profiling of human dental pulp from single subject.

    Science.gov (United States)

    Tete, Stefano; Mastrangelo, Filiberto; Scioletti, Anna Paola; Tranasi, Michelangelo; Raicu, Florina; Paolantonio, Michele; Stuppia, Liborio; Vinci, Raffaele; Gherlone, Enrico; Ciampoli, Cristian; Sberna, Maria Teresa; Conti, Pio

    2008-01-01

    Microarray is a recently developed simultaneous analysis of expression patterns of thousand of genes. The aim of this research was to evaluate the expression profile of human healthy dental pulp in order to find the presence of genes activated and encoding for proteins involved in the physiological process of human dental pulp. We report data obtained by analyzing expression profiles of human tooth pulp from single subjects, using an approach based on the amplification of the total RNA. Experiments were performed on a high-density array able to analyse about 21,000 oligonucleotide sequences of about 70 bases in duplicate, using an approach based on the amplification of the total RNA from the pulp of a single tooth. Obtained data were analyzed using the S.A.M. system (Significance Analysis of Microarray) and genes were merged according to their molecular functions and biological process by the Onto-Express software. The microarray analysis revealed 362 genes with specific pulp expression. Genes showing significant high expression were classified in genes involved in tooth development, protoncogenes, genes of collagen, DNAse, Metallopeptidases and Growth factors. We report a microarray analysis, carried out by extraction of total RNA from specimens of healthy human dental pulp tissue. This approach represents a powerful tool in the study of human normal and pathological pulp, allowing minimization of the genetic variability due to the pooling of samples from different individuals.

  6. Upgrading the ATLAS Tile Calorimeter electronics

    CERN Document Server

    Carrio, F; The ATLAS collaboration

    2013-01-01

    The Tile Calorimeter (TileCal) is the hadronic calorimeter covering the most central region of the ATLAS experiment at LHC. The TileCal readout consists of about 10000 channels. Its main upgrade will occur for the High Luminosity LHC phase (phase 2) where the luminosity will have increased 5-fold compared to the design luminosity (1034 cm−2s−1) but with maintained energy (i.e. 7+7 TeV). An additional luminosity increase by a factor of 2 can be achieved by luminosity leveling. This upgrade will probably happen around 2022. The upgrade aims at replacing the majority of the on- and off- detector electronics so that all calorimeter signals are directly digitized and sent to the off-detector electronics in the counting room. To achieve the required reliability, redundancy has been introduced at different levels. An ambitious upgrade development program is pursued studying different electronics options. Three different options are presently being investigated for the front-end electronic upgrade. Which one to u...

  7. Investigating critical success factors in tile industry

    Directory of Open Access Journals (Sweden)

    Davood Salmani

    2014-04-01

    Full Text Available This paper presents an empirical investigation to determine critical success factors influencing the success of tile industry in Iran. The study designs a questionnaire in Likert scale, distributes it among some experts in tile industry. Using Pearson correlation test, the study has detected that there was a positive and meaningful relationship between marketing planning and the success of tile industry (r = 0.312 Sig. = 0.001. However, there is not any meaningful relationship between low cost production and success of tile industry (r = 0.13 Sig. = 0.12 and, there is a positive and meaningful relationship between organizational capabilities and success of tile industry (r = 0.635 Sig. = 0.000. Finally, our investigation states that technology and distributing systems also influence on the success of tile industry, positively. The study has also used five regression analyses where the success of tile industry was the dependent variable and marketing planning, low cost production and organizational capabilities are independent variables and the results have confirmed some positive and meaningful relationship between the successes of tile industry with all independent variables.

  8. Analysis of Physical and Mechanical Properties of Marble Particles Floor-Tile Composite

    International Nuclear Information System (INIS)

    Parikin; Arslan, A.; Ismoyo, A.H.; Jodi, H.E.; Nurhasanah, S.

    2002-01-01

    Two criteria that very predictable to quality products of marble particles composite floor-tile are physical and mechanical properties. Simple manufacturing was conducted from powdering refuges of marble to molding and drying the specimens at ambient atmosphere. The characterization, to observe; density, crystal structure, microstructure, hardness and compressive/bending strength of the material, was performed in Serpong and IPB-Bogor. The analysis shows that polymeric crystallization was occurred by HEXA and the density and the hardness generally rise up with the improvements in mesh and composition of marble particles. But it is not always followed by the real improvements of compressive and bending strength, which related to the material stiffness. The curves figured that these two strengths give the maximum values at 60% composition of marble particles. It can be concluded that density and hardness are dependent on mesh and composition, whereas the stiffness (modulus) is only correlation with composition of particulate. The theoretical modulus of marble particles composite floor-tile has been evaluated at about 56.19 GPa. (author)

  9. Porcelain tiles using nepheline as alternative source of alkalis

    International Nuclear Information System (INIS)

    Cruz, C.M. da; Oliveira, D.C. de; Faustino, L.M.; Maestrelli, S.C.; Roveri, C.D.

    2016-01-01

    Porcelain tiles present good aesthetical properties, low water absorption and high mechanical and chemical attack resistance. The feldspar, one of its raw materials, is responsible form diminishing porosity and enhance mechanical resistance. It is normally imported, making the production more expensive. In this paper, it was studied the substitution of feldspar by nepheline under the rheological point of view, determining the optimum amount of deffloculant and the maximum concentration of solids of the suspensions. The results showed similar rheological behaviour, with a small reduction on the maximum concentration of solids as the proportion of nepheline increases. The pieces made with nepheline are darker than the ones made of feldspar; however, the magnetic separation results in lighter pieces. The formulations with nepheline as alkalis source presented a high increase of the density after heating. (author)

  10. Application of the Taguchi Method for Optimizing the Process Parameters of Producing Lightweight Aggregates by Incorporating Tile Grinding Sludge with Reservoir Sediments.

    Science.gov (United States)

    Chen, How-Ji; Chang, Sheng-Nan; Tang, Chao-Wei

    2017-11-10

    This study aimed to apply the Taguchi optimization technique to determine the process conditions for producing synthetic lightweight aggregate (LWA) by incorporating tile grinding sludge powder with reservoir sediments. An orthogonal array L 16 (4⁵) was adopted, which consisted of five controllable four-level factors (i.e., sludge content, preheat temperature, preheat time, sintering temperature, and sintering time). Moreover, the analysis of variance method was used to explore the effects of the experimental factors on the particle density, water absorption, bloating ratio, and loss on ignition of the produced LWA. Overall, the produced aggregates had particle densities ranging from 0.43 to 2.1 g/cm³ and water absorption ranging from 0.6% to 13.4%. These values are comparable to the requirements for ordinary and high-performance LWAs. The results indicated that it is considerably feasible to produce high-performance LWA by incorporating tile grinding sludge with reservoir sediments.

  11. Results of high heat flux tests and structural analysis of the new solid tungsten divertor tile for ASDEX Upgrade

    Energy Technology Data Exchange (ETDEWEB)

    Jaksic, Nikola, E-mail: nikola.jaksic@ipp.mpg.de; Greuner, Henri; Herrmann, Albrecht; Böswirth, Bernd; Vorbrugg, Stefan

    2015-10-15

    Highlights: • The main motivation for the HHF investigation of tungsten tiles was an untypical deformation of some specimens under thermal loading, observed during the previous tests in GLADIS test facility. • A nonlinear finite element (FE) model for simulations of the GLADIS tests has been built. • The unexpected plastic deformations are mainly caused by internal stresses due to the manufacturing process. The small discrepancies among the FEA investigated and measured plastic deformations are most likely caused, beside of the practical difficulties by measuring of low items, also by tile internal stresses. • The influences of the residual stresses caused by special production processes have to be taken into account by design of the structural part made of solid tungsten. - Abstract: Tungsten as plasma-facing material for fusion devices is currently the most favorable candidate. In general solid tungsten is used for shielding the plasma chamber interior against the high heat generated from the plasma. For the purposes of implementation at ASDEX Upgrade and as a contribution to ITER the thermal performance of tungsten tiles has been extensively tested in the high heat flux test facility GLADIS during the development phase and beyond. These tests have been performed on full scale tungsten tile prototypes including their clamping and cooling structure. Simulating the adiabatically thermal loading due to plasma operation in ASDEX Upgrade, the tungsten tiles have been subjected to a thermal load with central heat flux of 10–24 MW/m{sup 2} and absorbed energy between 370 and 680 kJ. This loading results in maximum surface temperatures between 1300 °C and 2800 °C. The tests in GLADIS have been accompanied by intensive numerical investigations using FEA methods. For this purpose a multiple nonlinear finite element model has been set up. This paper discusses the main results of the high heat flux final tests and their numerical simulation. Moreover, first

  12. Results of high heat flux tests and structural analysis of the new solid tungsten divertor tile for ASDEX Upgrade

    International Nuclear Information System (INIS)

    Jaksic, Nikola; Greuner, Henri; Herrmann, Albrecht; Böswirth, Bernd; Vorbrugg, Stefan

    2015-01-01

    Highlights: • The main motivation for the HHF investigation of tungsten tiles was an untypical deformation of some specimens under thermal loading, observed during the previous tests in GLADIS test facility. • A nonlinear finite element (FE) model for simulations of the GLADIS tests has been built. • The unexpected plastic deformations are mainly caused by internal stresses due to the manufacturing process. The small discrepancies among the FEA investigated and measured plastic deformations are most likely caused, beside of the practical difficulties by measuring of low items, also by tile internal stresses. • The influences of the residual stresses caused by special production processes have to be taken into account by design of the structural part made of solid tungsten. - Abstract: Tungsten as plasma-facing material for fusion devices is currently the most favorable candidate. In general solid tungsten is used for shielding the plasma chamber interior against the high heat generated from the plasma. For the purposes of implementation at ASDEX Upgrade and as a contribution to ITER the thermal performance of tungsten tiles has been extensively tested in the high heat flux test facility GLADIS during the development phase and beyond. These tests have been performed on full scale tungsten tile prototypes including their clamping and cooling structure. Simulating the adiabatically thermal loading due to plasma operation in ASDEX Upgrade, the tungsten tiles have been subjected to a thermal load with central heat flux of 10–24 MW/m"2 and absorbed energy between 370 and 680 kJ. This loading results in maximum surface temperatures between 1300 °C and 2800 °C. The tests in GLADIS have been accompanied by intensive numerical investigations using FEA methods. For this purpose a multiple nonlinear finite element model has been set up. This paper discusses the main results of the high heat flux final tests and their numerical simulation. Moreover, first results

  13. Physical principles for DNA tile self-assembly.

    Science.gov (United States)

    Evans, Constantine G; Winfree, Erik

    2017-06-19

    DNA tiles provide a promising technique for assembling structures with nanoscale resolution through self-assembly by basic interactions rather than top-down assembly of individual structures. Tile systems can be programmed to grow based on logical rules, allowing for a small number of tile types to assemble large, complex assemblies that can retain nanoscale resolution. Such algorithmic systems can even assemble different structures using the same tiles, based on inputs that seed the growth. While programming and theoretical analysis of tile self-assembly often makes use of abstract logical models of growth, experimentally implemented systems are governed by nanoscale physical processes that can lead to very different behavior, more accurately modeled by taking into account the thermodynamics and kinetics of tile attachment and detachment in solution. This review discusses the relationships between more abstract and more physically realistic tile assembly models. A central concern is how consideration of model differences enables the design of tile systems that robustly exhibit the desired abstract behavior in realistic physical models and in experimental implementations. Conversely, we identify situations where self-assembly in abstract models can not be well-approximated by physically realistic models, putting constraints on physical relevance of the abstract models. To facilitate the discussion, we introduce a unified model of tile self-assembly that clarifies the relationships between several well-studied models in the literature. Throughout, we highlight open questions regarding the physical principles for DNA tile self-assembly.

  14. Design study of an armor tile handling manipulator for the Fusion Experimental Reactor

    International Nuclear Information System (INIS)

    Shibanuma, K.; Honda, T.; Satoh, K.; Terakado, T.; Kondoh, M.; Sasaki, N.; Munakata, T.; Murakami, S.

    1991-01-01

    A conceptual design of the Fusion Experimental Reactor (FER), which is a D-T burning reactor following on JT-60 in Japan, has been developed by Japan Atomic Energy Research Institute (JAERI). In FER, a rail-mounted vehicle concept is planned to be adopted for in-vessel maintenance, such as maintenance of divertor plates and armor tiles. Advantages of this concept are the high stiffness of the rail as a base structure for maintenance and the high mobility of the vehicle along the rail. Twin armor tile handling manipulators installed on both sides of the vehicle have been designed. The respective manipulators for armor tile handling have 8 degrees of freedom in order to have access to any place of the first wall and to go through the horizontal port by operating manipulator joints. If the two types of manipulators for divertor plates and armor tiles are installed on the vehicle and the divertor handling manipulator carries a case filled with armor tiles, the replacement time of armor tiles will be reduced. In FER, moreover, maintenance of armor tiles, which is a scheduled maintenance, is planned to be carried out by the autonomous control using position sensors etc. In order to accumulate the data base for the development of the autonomous control of the manipulator in armor tile maintenance, the present paper describes basic mechanical characteristics (stress, deflection and natural frequency) of the armor tile handling manipulator calculated by static stress and dynamic eigenvalue analyses. (orig.)

  15. Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays

    Science.gov (United States)

    Popescu, Sorina C.; Popescu, George V.; Bachan, Shawn; Zhang, Zimei; Seay, Montrell; Gerstein, Mark; Snyder, Michael; Dinesh-Kumar, S. P.

    2007-01-01

    Calmodulins (CaMs) are the most ubiquitous calcium sensors in eukaryotes. A number of CaM-binding proteins have been identified through classical methods, and many proteins have been predicted to bind CaMs based on their structural homology with known targets. However, multicellular organisms typically contain many CaM-like (CML) proteins, and a global identification of their targets and specificity of interaction is lacking. In an effort to develop a platform for large-scale analysis of proteins in plants we have developed a protein microarray and used it to study the global analysis of CaM/CML interactions. An Arabidopsis thaliana expression collection containing 1,133 ORFs was generated and used to produce proteins with an optimized medium-throughput plant-based expression system. Protein microarrays were prepared and screened with several CaMs/CMLs. A large number of previously known and novel CaM/CML targets were identified, including transcription factors, receptor and intracellular protein kinases, F-box proteins, RNA-binding proteins, and proteins of unknown function. Multiple CaM/CML proteins bound many binding partners, but the majority of targets were specific to one or a few CaMs/CMLs indicating that different CaM family members function through different targets. Based on our analyses, the emergent CaM/CML interactome is more extensive than previously predicted. Our results suggest that calcium functions through distinct CaM/CML proteins to regulate a wide range of targets and cellular activities. PMID:17360592

  16. Salmonella and fecal indicator bacteria in tile waters draining poultry litter application fields in central Iowa

    Science.gov (United States)

    Hruby, C.; Soupir, M.

    2012-12-01

    was indicated by a rise in concentrations during or shortly after rainfall, but prior to any increase in tile flow. Macropores located above the tile lines were observed during smoke tests in 2012 confirming significantly greater macropore densities above tile lines in the no-till plots (average 23.2 macropores/m^2) as compared to the chisel-plowed plots (average 1.6 macropores/m^2). Identifiable macropores were generally within a 0.4m-wide zone above the tile lines. While bacterial loading to tile lines was dominated by rainfall-driven events, transport of bacteria to tile lines was observed less than a day after application under unsaturated conditions in 2012. Indicator bacteria concentrations were poorly correlated to Salmonella spp. throughout the study period, with water sample concentrations as high as 4x10^3 cfu/100 ml Salmonella spp. in samples where no E. coli or enterococci were detected. The differences in precipitation from year-to-year had the greatest effect on E. coli concentrations which averaged between 331 - 2140 cfu/100ml under the PL1 and PL2 treatments in 2010, and rarely exceeded 10 cfu/100ml in the month after litter application during dry years. Enterococci were similarly affected, while dry conditions did not result in lower average Salmonella spp. counts.

  17. Direct calibration of PICKY-designed microarrays

    Directory of Open Access Journals (Sweden)

    Ronald Pamela C

    2009-10-01

    Full Text Available Abstract Background Few microarrays have been quantitatively calibrated to identify optimal hybridization conditions because it is difficult to precisely determine the hybridization characteristics of a microarray using biologically variable cDNA samples. Results Using synthesized samples with known concentrations of specific oligonucleotides, a series of microarray experiments was conducted to evaluate microarrays designed by PICKY, an oligo microarray design software tool, and to test a direct microarray calibration method based on the PICKY-predicted, thermodynamically closest nontarget information. The complete set of microarray experiment results is archived in the GEO database with series accession number GSE14717. Additional data files and Perl programs described in this paper can be obtained from the website http://www.complex.iastate.edu under the PICKY Download area. Conclusion PICKY-designed microarray probes are highly reliable over a wide range of hybridization temperatures and sample concentrations. The microarray calibration method reported here allows researchers to experimentally optimize their hybridization conditions. Because this method is straightforward, uses existing microarrays and relatively inexpensive synthesized samples, it can be used by any lab that uses microarrays designed by PICKY. In addition, other microarrays can be reanalyzed by PICKY to obtain the thermodynamically closest nontarget information for calibration.

  18. ATLAS Rewards Russian Supplier for Scintillating Tile Production

    CERN Multimedia

    2001-01-01

    At a ceremony held at CERN on 30 July, the ATLAS collaboration awarded Russian firm SIA Luch from Podolsk in the Moscow region an ATLAS Suppliers Award. This follows delivery by the company of the final batch of scintillating tiles for the collaboration's Tile Calorimeter some six months ahead of schedule.   Representatives of Russian firm Luch Podolsk received the ATLAS Suppliers Award in the collaboration's Tile Calorimeter instrumentation plant at CERN on 30 July. In front of one Tile Calorimeter module instrumented by scintillating tiles are (left to right) IHEP physicists Evgueni Startchenko and Andrei Karioukhine, Luch Podolsk representatives Igor Karetnikov and Yuri Zaitsev, Tile Calorimeter Project Leader Rupert Leitner, ATLAS spokesperson Peter Jenni, and CERN Tile Calorimeter group leader Ana Henriques-Correia. Scintillating tiles form the active part of the ATLAS hadronic Tile Calorimeter, which will measure the energy and direction of particles produced in LHC collisions. They are emb...

  19. "Harshlighting" small blemishes on microarrays

    Directory of Open Access Journals (Sweden)

    Wittkowski Knut M

    2005-03-01

    Full Text Available Abstract Background Microscopists are familiar with many blemishes that fluorescence images can have due to dust and debris, glass flaws, uneven distribution of fluids or surface coatings, etc. Microarray scans show similar artefacts, which affect the analysis, particularly when one tries to detect subtle changes. However, most blemishes are hard to find by the unaided eye, particularly in high-density oligonucleotide arrays (HDONAs. Results We present a method that harnesses the statistical power provided by having several HDONAs available, which are obtained under similar conditions except for the experimental factor. This method "harshlights" blemishes and renders them evident. We find empirically that about 25% of our chips are blemished, and we analyze the impact of masking them on screening for differentially expressed genes. Conclusion Experiments attempting to assess subtle expression changes should be carefully screened for blemishes on the chips. The proposed method provides investigators with a novel robust approach to improve the sensitivity of microarray analyses. By utilizing topological information to identify and mask blemishes prior to model based analyses, the method prevents artefacts from confounding the process of background correction, normalization, and summarization.

  20. ATLAS rewards Russian supplier for scintillating tile production

    CERN Multimedia

    Patrice Loïez

    2001-01-01

    The ATLAS collaboration has awarded Russian firm SIA Luch from Podolsk in the Moscow region an ATLAS Supplier Award. This follows delivery by the company of the final batch of scintillating tiles for the collaboration's tile calorimeter some six months ahead of schedule. Representatives of the firm are seen here receiving the award at a ceremony held in the collaboration's tile calorimeter instrumentation plant at CERN on 30 July. In front of one tile calorimeter module instrumented by scintillating tiles are (left to right) IHEP physicists Evgueni Startchenko and Andrei Karioukhine, Luch Podolsk representatives Igor Karetnikov and Yuri Zaitsev, tile calorimeter project leader Rupert Leitner, ATLAS spokesperson Peter Jenni, and CERN tile calorimeter group leader Ana Henriques-Correia.

  1. Effects of body formulation and firing temperature to properties of ceramic tile incorporated with electric arc furnace (EAF) slag waste

    Science.gov (United States)

    Sharif, Nurulakmal Mohd; Lim, Chi Yang; Teo, Pao Ter; Seman, Anasyida Abu

    2017-07-01

    Significant quantities of sludge and slag are generated as waste materials or by-products from steel industries. One of the by-products is Electric Arc Furnace (EAF) steel slag which consists of oxides such as CaO, Al2O3 and FeO. This makes it possible for slag to partially replace the raw materials in ceramic tile production. In our preliminary assessment of incorporating the EAF slag into ceramic tile, it was revealed that at fixed firing temperature of 1150°C, the tile of composition 40 wt.% EAF slag - 60 wt.% ball clay has comparable properties with commercial ceramic tile. Thus, this current study would focus on effects of body formulation (different weight percentages of K-feldspar and silica) and different firing temperatures to properties of EAF slag added ceramic tile. EAF slag from Southern Steel Berhad (SSB) was crushed into micron size (EAF slag content was 40 wt.%) and milled with ball clay, K-feldspar and silica before compacted and fired at 1125°C and 1150°C. The EAF slag added tile was characterized in terms of water absorption, apparent porosity, bulk density, modulus of rupture (MOR) and phase analysis via X-ray diffraction (XRD). The composition of 40 wt.% EAF slag - 30 wt.% ball clay - 10 wt.% K-feldspar - 20 wt.% silica (10F_20S), fired at 1150°C showed the lowest water absorption, apparent porosity and highest bulk density due to enhancement of densification process during firing. However, the same composition of ceramic tile (10F_20S) had the highest MOR at lower firing temperature of 1125°C, contributed by presence of the highest total amount of anorthite and wollastonite reinforcement crystalline phases (78.40 wt.%) in the tile. Overall, both the water absorption and MOR of all ceramic tiles surpassed the requirement regulated by MS ISO 13006:2014 Standard (Annex G: Dry-pressed ceramic tile with low water absorption, Eb ≤ 0.50 % and minimum MOR of 35 MPa).

  2. ALT-II armor tile design for upgraded TEXTOR operation

    International Nuclear Information System (INIS)

    Newberry, B.L.; McGrath, R.T.; Watson, R.D.

    1994-01-01

    The upgrade of the TEXTOR tokamak at KFA Julich will be completed in the spring of 1994. The upgrade will extend the TEXTOR pulse length from 5 seconds to 10 seconds. The auxiliary heating systems are also scheduled to be upgraded so that eventually a total of 8.0 MW auxiliary heating will be available through a combination of neutral beam injection and radio frequency heating. Originally, the inertially cooled armor tiles on the full toroidal belt Advanced Limiter Test - II (ALT-II) were designed for 5-second operation with a total heating power of 6.0 MW. The upgrade of TEXTOR will increase the energy deposited per pulse onto ALT-II by more than 300%. Consequently, the graphite armor tiles for ALT-II had to be redesigned in order to increase their thermal inertia and, thereby, avoid excessively high graphite armor surface temperatures that would lead to unacceptable contamination of the plasma. The armor tile thermal inertia had been increase primarily by expanding the radial thickness of the tiles from 17 mm to 20 mm. This increase in radial tile dimension will reduce the overall pumping efficiency of the ALT-II pump limiter by about 30%. The final armor tile design was a compromise between increasing the power handling capability and reducing the particle exhaust efficiency of ALT-II. The reduction in exhaust efficiency is unfortunate, but could only be avoided by active cooling of the ALT-II armor tiles. The active cooling option was too complicated and expensive to be considered at this time

  3. Measurement of Tritium Surface Distribution on TFTR Bumper Limiter Tiles

    International Nuclear Information System (INIS)

    Sugiyama, K.; Tanabe, T.; Skinner, C.H.; Gentile, C.A.

    2004-01-01

    The tritium surface distribution on graphite tiles used in the Tokamak Fusion Test Reactor (TFTR) bumper limiter and exposed to TFTR deuterium-tritium (D-T) discharges from 1993 to 1997 was measured by the Tritium Imaging Plate Technique (TIPT). The TFTR bumper limiter shows both re-/co-deposition and erosion. The tritium images for all tiles measured are strongly correlated with erosion and deposition patterns, and long-term tritium retention was found in the re-/co-depositions and flakes. The CFC tiles located at erosion dominated areas clearly showed their woven structure in their tritium images owing to different erosion yields between fibers and matrix. Significantly high tritium retention was observed on all sides of the erosion tiles, indicating carbon transport via repetition of local erosion/deposition cycles

  4. Evaluation of tile layer productivity in construction project

    Science.gov (United States)

    Aziz, Hamidi Abdul; Hassan, Siti Hafizan; Rosly, Noorsyalili; Ul-Saufie, Ahmad Zia

    2017-10-01

    Construction is a key sector of the national economy for countries all over the world. Until today, construction industries are still facing lots of problems concerning the low productivity, poor safety and insufficient quality. Labour productivity is one of the factors that will give impact to the quality of projects. This study is focusing on evaluating the tile layer productivity in the area of Seberang Perai, Penang. The objective of this study is to determine the relationship of age and experience of tile layers with their productivity and to evaluate the effect of nationality to tile layers productivity. Interview and site observation of tile layers has been conducted to obtain the data of age, experience and nationality of tile layers. Site observation is made to obtain the number of tiles installed for every tile layer for the duration of 1 hour, and the data were analysed by using Statistical Package for Social Science (IBM SPSS Statistic 23) software. As a result, there is a moderate linear relationship between age and experience of tile layers with their productivity. The age of 30 and the experience of 4 years give the highest productivity. It also can be concluded that the tile layers from Indonesia tend to have higher productivity compared to tile layers from Myanmar.

  5. Electron beam-curing coating for pressed cement roof tiles with high-build and excellent durability

    International Nuclear Information System (INIS)

    Maruyama, Tsutomu; Kiyata, Hiroaki

    1979-01-01

    Thick slate has expanded the demand steadily and spread to whole Japan except the northernmost part as a roof material, because it deals with rain water well, its strength, coldness resistance and endurance are excellent, and it can be worked easily. The ornamental finishing by urethane coating is not satisfactory in view of the improvement of productivity and the measures to pollution as well as the design and color. In order to meet this background, new coating has been sought, and electron beam-curing coating seems to be most suitable to cement roof tiles. The history and the present state of cement roof tiles are explained. About 700 tons/month of the coating for cement roof tiles is used at present, and acryl resin coating occupies about 75%, while urethane resin coating is used in Kyushu relatively more. The urethane coating is applied in shops by electrostatic coating, but the acryl coating is mostly applied in sites after tiling over. Electron beam curing used electron beam of 200 keV, and polymerization starts from the radicals formed through ionization, excitation and neutralization. The features of electron beam-curing coating are good adhesion to roof tiles, keeping luster and endurance to discoloration, strong film and feeling like porcelain, drying at normal temperature, productivity and economy. (J.P.N.)

  6. Upgrading the ATLAS Tile Calorimeter electronics

    CERN Document Server

    Souza, J; The ATLAS collaboration

    2014-01-01

    The Tile Calorimeter (TileCal) is the hadronic calorimeter covering the central region of the ATLAS experiment at LHC. The TileCal readout consists of about 10000 channels. Its main upgrade will occur for the High Luminosity LHC phase (phase 2) where the peak luminosity will increase 5-fold compared to the design luminosity (10exp34 cm−2s−1) but with maintained energy (i.e. 7+7 TeV). An additional increase of the average luminosity with a factor of 2 can be achieved by luminosity leveling. This upgrade will probably happen around 2023. The upgrade aims at replacing the majority of the on- and off-detector electronics so that all calorimeter signals are directly digitized and sent to the off-detector electronics in the counting room. To achieve the required reliability, redundancy has been introduced at different levels. The smallest independent on-detector electronics module has been reduced from 45 channels to 6, greatly reducing the consequences of a failure in the on-detector electronics. The size of t...

  7. Noise dependence with pile-up in the ATLAS Tile calorimeter

    CERN Document Server

    Araque Espinosa, Juan Pedro; The ATLAS collaboration

    2015-01-01

    The Tile Calorimeter, TileCal, is the central hadronic calorimeter of the ATLAS experiment and comprises alternating layers of steel (as absorber material) and plastic (as active material), known as tiles. Between 2009 and 2012, the LHC has performed better than expected producing proton-proton collisions at a very high rate. Under these challenging conditions not only the energy from an interesting event will be measured but also a component coming from other collisions. This component is referred to as pile-up noise. Studies carried out to better understand how pile-up affects calorimeter noise under different circumstances are described.

  8. Batched Tile Low-Rank GEMM on GPUs

    KAUST Repository

    Charara, Ali

    2018-02-01

    Dense General Matrix-Matrix (GEMM) multiplication is a core operation of the Basic Linear Algebra Subroutines (BLAS) library, and therefore, often resides at the bottom of the traditional software stack for most of the scientific applications. In fact, chip manufacturers give a special attention to the GEMM kernel implementation since this is exactly where most of the high-performance software libraries extract the hardware performance. With the emergence of big data applications involving large data-sparse, hierarchically low-rank matrices, the off-diagonal tiles can be compressed to reduce the algorithmic complexity and the memory footprint. The resulting tile low-rank (TLR) data format is composed of small data structures, which retains the most significant information for each tile. However, to operate on low-rank tiles, a new GEMM operation and its corresponding API have to be designed on GPUs so that it can exploit the data sparsity structure of the matrix while leveraging the underlying TLR compression format. The main idea consists in aggregating all operations onto a single kernel launch to compensate for their low arithmetic intensities and to mitigate the data transfer overhead on GPUs. The new TLR GEMM kernel outperforms the cuBLAS dense batched GEMM by more than an order of magnitude and creates new opportunities for TLR advance algorithms.

  9. Upgrade of the ATLAS Hadronic Tile Calorimeter for the High Luminosity LHC

    Science.gov (United States)

    Tortajada, Ignacio Asensi

    2018-01-01

    The Large Hadron Collider (LHC) has envisaged a series of upgrades towards a High Luminosity LHC (HL-LHC) delivering five times the LHC nominal instantaneous luminosity. The ATLAS Phase II upgrade, in 2024, will accommodate the upgrade of the detector and data acquisition system for the HL-LHC. The Tile Calorimeter (TileCal) will undergo a major replacement of its on- and off-detector electronics. In the new architecture, all signals will be digitized and then transferred directly to the off-detector electronics, where the signals will be reconstructed, stored, and sent to the first level of trigger at the rate of 40 MHz. This will provide better precision of the calorimeter signals used by the trigger system and will allow the development of more complex trigger algorithms. Changes to the electronics will also contribute to the reliability and redundancy of the system. Three different front-end options are presently being investigated for the upgrade, two of them based on ASICs, and a final solution will be chosen after extensive laboratory and test beam studies that are in progress. A hybrid demonstrator module is being developed using the new electronics while conserving compatibility with the current system. The status of the developments will be presented, including results from the several tests with particle beams.

  10. Development of Clay Tile Coatings for Steep-Sloped Cool Roofs

    Directory of Open Access Journals (Sweden)

    Lucia Brinchi

    2013-07-01

    Full Text Available Most of the pitched roofs of existing buildings in Europe are covered by non-white roofing products, e.g., clay tiles. Typical, cost effective, cool roof solutions are not applicable to these buildings due to important constraints deriving from: (i the owners of homes with roofs visible from the ground level; (ii the regulation about the preservation of the historic architecture and the minimization of the visual environment impact, in particular in historic centers. In this perspective, the present paper deals with the development of high reflective coatings with the purpose to elaborate “cool” tiles with the same visual appearance of traditional tiles for application to historic buildings. Integrated experimental analyses of reflectance, emittance, and superficial temperature were carried out. Deep analysis of the reflectance spectra is undertaken to evaluate the effect of different mineral pigments, binders, and an engobe basecoat. Two tile typologies are investigated: substrate-basecoat-topcoat three-layer tile and substrate-topcoat two-layer tile. The main results show that the developed coatings are able to increase the overall solar reflectance by more than 20% with acceptable visual appearance, suitable for application in historic buildings. Additionally, the effect of a substrate engobe layer allows some further contribution to the increase of the overall reflectance characteristics.

  11. A Global User-Driven Model for Tile Prefetching in Web Geographical Information Systems.

    Science.gov (United States)

    Pan, Shaoming; Chong, Yanwen; Zhang, Hang; Tan, Xicheng

    2017-01-01

    A web geographical information system is a typical service-intensive application. Tile prefetching and cache replacement can improve cache hit ratios by proactively fetching tiles from storage and replacing the appropriate tiles from the high-speed cache buffer without waiting for a client's requests, which reduces disk latency and improves system access performance. Most popular prefetching strategies consider only the relative tile popularities to predict which tile should be prefetched or consider only a single individual user's access behavior to determine which neighbor tiles need to be prefetched. Some studies show that comprehensively considering all users' access behaviors and all tiles' relationships in the prediction process can achieve more significant improvements. Thus, this work proposes a new global user-driven model for tile prefetching and cache replacement. First, based on all users' access behaviors, a type of expression method for tile correlation is designed and implemented. Then, a conditional prefetching probability can be computed based on the proposed correlation expression mode. Thus, some tiles to be prefetched can be found by computing and comparing the conditional prefetching probability from the uncached tiles set and, similarly, some replacement tiles can be found in the cache buffer according to multi-step prefetching. Finally, some experiments are provided comparing the proposed model with other global user-driven models, other single user-driven models, and other client-side prefetching strategies. The results show that the proposed model can achieve a prefetching hit rate in approximately 10.6% ~ 110.5% higher than the compared methods.

  12. The ATLAS Tile Calorimeter

    CERN Document Server

    Henriques Correia, Ana Maria

    2015-01-01

    TileCal is the Hadronic calorimeter covering the most central region of the ATLAS experiment at the LHC. It uses iron plates as absorber and plastic scintillating tiles as the active material. Scintillation light produced in the tiles is transmitted by wavelength shifting fibres to photomultiplier tubes (PMTs). The resulting electronic signals from the approximately 10000 PMTs are measured and digitised every 25 ns before being transferred to off-detector data-acquisition systems. This contribution will review in a first part the performances of the calorimeter during run 1, obtained from calibration data, and from studies of the response of particles from collisions. In a second part it will present the solutions being investigated for the ongoing and future upgrades of the calorimeter electronics.

  13. The ATLAS Tile Calorimeter

    International Nuclear Information System (INIS)

    Henriques, A.

    2015-01-01

    TileCal is the Hadronic calorimeter covering the most central region of the ATLAS experiment at the LHC. It uses iron plates as absorber and plastic scintillating tiles as the active material. Scintillation light produced in the tiles is transmitted by wavelength shifting fibres to photomultiplier tubes (PMTs). The resulting electronic signals from the approximately 10000 PMTs are measured and digitised every 25 ns before being transferred to off-detector data-acquisition systems. This contribution will review in a first part the performances of the calorimeter during run 1, obtained from calibration data, and from studies of the response of particles from collisions. In a second part it will present the solutions being investigated for the ongoing and future upgrades of the calorimeter electronics. (authors)

  14. Divertor tungsten tiles erosion in the region of the castellated gaps

    Energy Technology Data Exchange (ETDEWEB)

    Hu, Wanpeng, E-mail: wangdez@dlut.edu.cn; Sang, Chaofeng; Sun, Zhenyue; Wang, Dezhen

    2016-11-01

    Highlights: • Simulation of the tungsten tiles erosion by different impurities in the divertor gap region is done by using a 2d3v Particle-In-Cell code. • High-Z impurity causes the largest erosion rate on W tile. • The peak physical sputtering erosion rate locates at the plasma-facing corners. - Abstract: Erosion of tungsten (W) is a very important issue for the future fusion device. The castellated divertor makes it more complicated due to complex geometry of the gap between the tiles. In this work, the plasma behaviors and resulting W tile erosion in the divertor tile gap region are studied by using a two dimension-in-space and three dimension-in-velocity (2d3 v) Particle-In-Cell (PIC) code. Deuterium ions (D{sup +}) and electrons are traced self-consistently in the simulation to provide the plasma background. Since there are lots of impurities, which may make a great impact on the tile erosion, in the divertor region to radiate the power, the erosion of W tile by different species are thus considered. The contributions of deuterium and impurities: Li, C, Ne, and Ar, to the W erosion, are studied under EAST conditions to show a straightforward insight. It is observed that the physical sputtering of W tile by impurities is much higher than that by the D ions, and the peak erosion region locates at the plasma-facing corners.

  15. Producing superhydrophobic roof tiles

    International Nuclear Information System (INIS)

    Carrascosa, Luis A M; Facio, Dario S; Mosquera, Maria J

    2016-01-01

    Superhydrophobic materials can find promising applications in the field of building. However, their application has been very limited because the synthesis routes involve tedious processes, preventing large-scale application. A second drawback is related to their short-term life under outdoor conditions. A simple and low-cost synthesis route for producing superhydrophobic surfaces on building materials is developed and their effectiveness and their durability on clay roof tiles are evaluated. Specifically, an organic–inorganic hybrid gel containing silica nanoparticles is produced. The nanoparticles create a densely packed coating on the roof tile surface in which air is trapped. This roughness produces a Cassie–Baxter regime, promoting superhydrophobicity. A surfactant, n-octylamine, was also added to the starting sol to catalyze the sol–gel process and to coarsen the pore structure of the gel network, preventing cracking. The application of ultrasound obviates the need to use volatile organic compounds in the synthesis, thereby making a ‘green’ product. It was also demonstrated that a co-condensation process effective between the organic and inorganic species is crucial to obtain durable and effective coatings. After an aging test, high hydrophobicity was maintained and water absorption was completely prevented for the roof tile samples under study. However, a transition from a Cassie–Baxter to a Wenzel state regime was observed as a consequence of the increase in the distance between the roughness pitches produced by the aging of the coating. (paper)

  16. Tiling arbitrarily nested loops by means of the transitive

    Directory of Open Access Journals (Sweden)

    Bielecki Włodzimierz

    2016-12-01

    Full Text Available A novel approach to generation of tiled code for arbitrarily nested loops is presented. It is derived via a combination of the polyhedral and iteration space slicing frameworks. Instead of program transformations represented by a set of affine functions, one for each statement, it uses the transitive closure of a loop nest dependence graph to carry out corrections of original rectangular tiles so that all dependences of the original loop nest are preserved under the lexicographic order of target tiles. Parallel tiled code can be generated on the basis of valid serial tiled code by means of applying affine transformations or transitive closure using on input an inter-tile dependence graph whose vertices are represented by target tiles while edges connect dependent target tiles. We demonstrate how a relation describing such a graph can be formed. The main merit of the presented approach in comparison with the well-known ones is that it does not require full permutability of loops to generate both serial and parallel tiled codes; this increases the scope of loop nests to be tiled.

  17. Hearing Threshold Level Inworkers of Meybod Tile Factory

    Directory of Open Access Journals (Sweden)

    F Nourani

    2008-04-01

    Full Text Available Introduction: Occupational exposure to excessive noise is commonly encountered in a large number of industries in Iran. This study evaluated the hearing threshold and hearing loss in Meybod tile factory workers. Methods: This cross-sectional study included 371 tile factoryworkers during summer and autumn of 2005. Current noise exposure was estimated using sound level meter .A specially formatted questionnaire was used. Totoscophc examination and conductive air audiometery were used to assess the hearing loss in each subject .Finally data was analyzed using SPSS version 11.5. Results: Occupational noise increased mean of hearing threshold at all frequencies which was significant at 3, 4 KHz in both ears (p<0.05.Prevalence of hearing impairment at high and low frequencies were 39.2% and 46.5%.Prevalence of occupational NIHL was 12.9% and the odds of NIHL significantly increased with noise exposure of more than 10 years. The hearing threshold was worse in both ears of workers with tinnitus. Conclusion: High prevalence of hearing loss and NIHL emphasizes on the necessity of hearing conservational programs in tile factory workers.

  18. Performance of the ATLAS hadronic Tile calorimeter

    CERN Document Server

    Bartos, Pavol; The ATLAS collaboration

    2016-01-01

    Performance of the ATLAS hadronic Tile calorimeter The Tile Calorimeter (TileCal) of the ATLAS experiment at the LHC is the central hadronic calorimeter designed for energy reconstruction of hadrons, jets, tau-particles and missing transverse energy. TileCal is a scintillator-steel sampling calorimeter and it covers the region of pseudorapidity < 1.7. The scintillation light produced in the scintillator tiles is transmitted by wavelength shifting fibers to photomultiplier tubes (PMTs). The analog signals from the PMTs are amplified, shaped and digitized by sampling the signal every 25 ns. The TileCal frontend electronics reads out the signals produced by about 10000 channels measuring energies ranging from ~30 MeV to ~2 TeV. Each stage of the signal production from scintillation light to the signal reconstruction is monitored and calibrated. The performance of the calorimeter have been studied in-situ employing cosmic ray muons and a large sample of proton-proton collisions acquired during the operations o...

  19. Characterization of non-calcareous 'thin' red clay from south-eastern Brazil: applicability in wall tile manufacture

    Energy Technology Data Exchange (ETDEWEB)

    Sousa, S. J.G.; Holanda, J. N.F., [Grupo de Materiais Ceramicos - LAMAV-CCT, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Campos dos Goytacazes, RJ (Brazil)

    2012-04-15

    In this work the use of 'thin' red clay from south-eastern Brazil (Campos dos Goytacazes, RJ) as raw material for the manufacture of wall tile was investigated. A wide range of characterization techniques was employed, including X-ray diffraction (XRD), X-ray fluorescence (XRF), scanning electron microscopy (SEM), grain-size analysis, and thermogravimetric analysis. The wall tile body was prepared by the dry process. The tile pieces were uniaxially pressed and fired between 1080 - 1180 deg C using a fast-firing cycle. The following technological properties were determined: linear shrinkage, water absorption, apparent density, and flexural strength. The development of the microstructure was followed by SEM and XRD analyses. It was found that the 'thin' red clay is kaolinitic type containing a substantial amount of quartz. The results also showed that the 'thin' red clay could be used in the manufacture of wall tiles, as they present properties compatible with those specified for class BIII of ISO 13006 standard. (author)

  20. High-performance bidiagonal reduction using tile algorithms on homogeneous multicore architectures

    KAUST Repository

    Ltaief, Hatem; Luszczek, Piotr R.; Dongarra, Jack

    2013-01-01

    dependence translation layer that maps the general algorithm with column-major data layout into the tile data layout; and (4) a dynamic runtime system that efficiently schedules the newly implemented kernels across the processing units and ensures

  1. Self assembly of rectangular shapes on concentration programming and probabilistic tile assembly models.

    Science.gov (United States)

    Kundeti, Vamsi; Rajasekaran, Sanguthevar

    2012-06-01

    Efficient tile sets for self assembling rectilinear shapes is of critical importance in algorithmic self assembly. A lower bound on the tile complexity of any deterministic self assembly system for an n × n square is [Formula: see text] (inferred from the Kolmogrov complexity). Deterministic self assembly systems with an optimal tile complexity have been designed for squares and related shapes in the past. However designing [Formula: see text] unique tiles specific to a shape is still an intensive task in the laboratory. On the other hand copies of a tile can be made rapidly using PCR (polymerase chain reaction) experiments. This led to the study of self assembly on tile concentration programming models. We present two major results in this paper on the concentration programming model. First we show how to self assemble rectangles with a fixed aspect ratio ( α:β ), with high probability, using Θ( α + β ) tiles. This result is much stronger than the existing results by Kao et al. (Randomized self-assembly for approximate shapes, LNCS, vol 5125. Springer, Heidelberg, 2008) and Doty (Randomized self-assembly for exact shapes. In: proceedings of the 50th annual IEEE symposium on foundations of computer science (FOCS), IEEE, Atlanta. pp 85-94, 2009)-which can only self assembly squares and rely on tiles which perform binary arithmetic. On the other hand, our result is based on a technique called staircase sampling . This technique eliminates the need for sub-tiles which perform binary arithmetic, reduces the constant in the asymptotic bound, and eliminates the need for approximate frames (Kao et al. Randomized self-assembly for approximate shapes, LNCS, vol 5125. Springer, Heidelberg, 2008). Our second result applies staircase sampling on the equimolar concentration programming model (The tile complexity of linear assemblies. In: proceedings of the 36th international colloquium automata, languages and programming: Part I on ICALP '09, Springer-Verlag, pp 235

  2. TileDCS web system

    International Nuclear Information System (INIS)

    Maidantchik, C; Ferreira, F; Grael, F

    2010-01-01

    The web system described here provides features to monitor the ATLAS Detector Control System (DCS) acquired data. The DCS is responsible for overseeing the coherent and safe operation of the ATLAS experiment hardware. In the context of the Hadronic Tile Calorimeter Detector (TileCal), it controls the power supplies of the readout electronics acquiring voltages, currents, temperatures and coolant pressure measurements. The physics data taking requires the stable operation of the power sources. The TileDCS Web System retrieves automatically data and extracts the statistics for given periods of time. The mean and standard deviation outcomes are stored as XML files and are compared to preset thresholds. Further, a graphical representation of the TileCal cylinders indicates the state of the supply system of each detector drawer. Colors are designated for each kind of state. In this way problems are easier to find and the collaboration members can focus on them. The user selects a module and the system presents detailed information. It is possible to verify the statistics and generate charts of the parameters over the time. The TileDCS Web System also presents information about the power supplies latest status. One wedge is colored green whenever the system is on. Otherwise it is colored red. Furthermore, it is possible to perform customized analysis. It provides search interfaces where the user can set the module, parameters, and the time period of interest. The system also produces the output of the retrieved data as charts, XML files, CSV and ROOT files according to the user's choice.

  3. Detritiation of tiles from tokamaks by laser cleaning

    International Nuclear Information System (INIS)

    Coad, J. Paul; Widdowson, Anna; Farcage, Daniel; Semerok, Alexander; Thro, P.-Y.; Likonen, Jari; Renvall, Tommi

    2007-01-01

    Laser ablation has been used to clean surfaces or to decontaminate hot cells by removing paint, and has been tested on deposited carbon layers from the TEXTOR tokamak. This paper reports on successful trials in the Beryllium Handling Facility of a pulsed laser cleaning system to remove H-isotope containing carbon deposits on tiles from the JET tokamak. The laser beam is rastered over the surface of the tiles to remove the deposit. Two types of JET carbon-fibre composite (CFC) tiles were treated. The first was covered with carbon-based deposits up to 300 μm thick with high H-isotope content, the other was covered with a mixed Be/C film ∼ 50 microns thick. One scan of the laser was sufficient to completely change the appearance and expose the fibre planes. From cross-sectional micrographs, it was found that overall three scans provided the most effective settings for complete film removal. An area 250 cm 2 of the second tile was cleaned in 20 minutes, clearly demonstrating the efficiency of laser cleaning for the removal of tokamak deposits such as likely to occur in ITER. (authors)

  4. Multi-application inter-tile synchronization on ultra-high-resolution display walls

    KAUST Repository

    Nam, Sungwon; Deshpande, Sachin; Vishwanath, Venkatram; Jeong, Byungil; Renambot, Luc; Leigh, Jason

    2010-01-01

    barrier. When a tiled display has to support multiple applications at the same time, however, the simple networked barrier approach does not scale. In this paper we propose and experimentally validate two synchronization algorithms to achieve low-latency

  5. No-cost manual method for preparation of tissue microarrays having high quality comparable to semiautomated methods.

    Science.gov (United States)

    Foda, Abd Al-Rahman Mohammad

    2013-05-01

    Manual tissue microarray (TMA) construction had been introduced to avoid the high cost of automated and semiautomated techniques. The cheapest and simplest technique for constructing manual TMA was that of using mechanical pencil tips. This study was carried out to modify this method, aiming to raise its quality to reach that of expensive ones. Some modifications were introduced to Shebl's technique. Two conventional mechanical pencil tips of different diameters were used to construct the recipient blocks. A source of mild heat was used, and blocks were incubated at 38°C overnight. With our modifications, 3 high-density TMA blocks were constructed. We successfully performed immunostaining without substantial tissue loss. Our modifications increased the number of cores per block and improved the stability of the cores within the paraffin block. This new, modified technique is a good alternative for expensive machines in many laboratories.

  6. MASHUP SCHEME DESIGN OF MAP TILES USING LIGHTWEIGHT OPEN SOURCE WEBGIS PLATFORM

    Directory of Open Access Journals (Sweden)

    T. Hu

    2018-04-01

    Full Text Available To address the difficulty involved when using existing commercial Geographic Information System platforms to integrate multi-source image data fusion, this research proposes the loading of multi-source local tile data based on CesiumJS and examines the tile data organization mechanisms and spatial reference differences of the CesiumJS platform, as well as various tile data sources, such as Google maps, Map World, and Bing maps. Two types of tile data loading schemes have been designed for the mashup of tiles, the single data source loading scheme and the multi-data source loading scheme. The multi-sources of digital map tiles used in this paper cover two different but mainstream spatial references, the WGS84 coordinate system and the Web Mercator coordinate system. According to the experimental results, the single data source loading scheme and the multi-data source loading scheme with the same spatial coordinate system showed favorable visualization effects; however, the multi-data source loading scheme was prone to lead to tile image deformation when loading multi-source tile data with different spatial references. The resulting method provides a low cost and highly flexible solution for small and medium-scale GIS programs and has a certain potential for practical application values. The problem of deformation during the transition of different spatial references is an important topic for further research.

  7. High throughput production of mouse monoclonal antibodies using antigen microarrays

    DEFF Research Database (Denmark)

    De Masi, Federico; Chiarella, P.; Wilhelm, H.

    2005-01-01

    Recent advances in proteomics research underscore the increasing need for high-affinity monoclonal antibodies, which are still generated with lengthy, low-throughput antibody production techniques. Here we present a semi-automated, high-throughput method of hybridoma generation and identification....... Monoclonal antibodies were raised to different targets in single batch runs of 6-10 wk using multiplexed immunisations, automated fusion and cell-culture, and a novel antigen-coated microarray-screening assay. In a large-scale experiment, where eight mice were immunized with ten antigens each, we generated...

  8. The ATLAS Tile Calorimeter Phase-II Upgrade Demonstrator Data Acquisition and Software

    CERN Document Server

    Little, Jared David; The ATLAS collaboration

    2018-01-01

    The LHC plans a series of upgrades culminating in the High Luminosity LHC (HL-LHC) which will have an average luminosity 5-7 times larger than the design LHC value. The electronics of the hadronic Tile Calorimeter (TileCal) will undergo a substantial upgrade to accommodate to the HL-LHC parameters. In particular, TileCal will undergo a major replacement of its on- and off-detector electronics. The photomultiplier signals will be digitized and transferred off-detector to the TileCal PreProcessors (TilePPr) for every bunch crossing, requiring a data bandwidth of 40 Tbps. The TilePPr will reconstruct, store and send the calorimeter signals to first level of trigger at a rate of 40 MHz. This will provide better precision of the calorimeter signals used by the trigger system and will allow the development of more complex trigger algorithms. In parallel, the data samples will be stored in pipeline memories and the data of the events selected by the ATLAS central trigger system and transferred to the ATLAS global Da...

  9. Computerized Machine for Cutting Space Shuttle Thermal Tiles

    Science.gov (United States)

    Ramirez, Luis E.; Reuter, Lisa A.

    2009-01-01

    A report presents the concept of a machine aboard the space shuttle that would cut oversized thermal-tile blanks to precise sizes and shapes needed to replace tiles that were damaged or lost during ascent to orbit. The machine would include a computer-controlled jigsaw enclosed in a clear acrylic shell that would prevent escape of cutting debris. A vacuum motor would collect the debris into a reservoir and would hold a tile blank securely in place. A database stored in the computer would contain the unique shape and dimensions of every tile. Once a broken or missing tile was identified, its identification number would be entered into the computer, wherein the cutting pattern associated with that number would be retrieved from the database. A tile blank would be locked into a crib in the machine, the shell would be closed (proximity sensors would prevent activation of the machine while the shell was open), and a "cut" command would be sent from the computer. A blade would be moved around the crib like a plotter, cutting the tile to the required size and shape. Once the tile was cut, an astronaut would take a space walk for installation.

  10. Geopolymers as potential repair material in tiles conservation

    Science.gov (United States)

    Geraldes, Catarina F. M.; Lima, Augusta M.; Delgado-Rodrigues, José; Mimoso, João Manuel; Pereira, Sílvia R. M.

    2016-03-01

    The restoration materials currently used to fill gaps in historical architectural tiles (e.g. lime or organic resin pastes) usually show serious drawbacks in terms of compatibility, effectiveness or durability. The existing solutions do not fully protect Portuguese faïence tiles ( azulejos) in outdoor conditions and frequently result in further deterioration. Geopolymers can be a potential solution for tile lacunae infill, given the chemical-mineralogical similitude to the ceramic body, and also the durability and versatile range of physical properties that can be obtained through the manipulation of their formulation and curing conditions. This work presents and discusses the viability of the use of geopolymeric pastes to fill lacunae in tiles or to act as "cold" cast ceramic tile surrogates reproducing missing tile fragments. The formulation of geopolymers, namely the type of activators, the alumino-silicate source, the quantity of water required for adequate workability and curing conditions, was studied. The need for post-curing desalination was also considered envisaging their application in the restoration of outdoor historical architectural tiles frequently exposed to adverse environmental conditions. The possible advantages and disadvantages of the use of geopolymers in the conservation of tiles are also discussed. The results obtained reveal that geopolymers pastes are a promising material for the restoration of tiles, when compared to other solutions currently in use.

  11. Characterization of ancient ceramic tiles using XRF = = = =

    International Nuclear Information System (INIS)

    Ben Abdelwahed, Haifa

    2002-01-01

    The measurement of energies and intensities of fluorescent X-rays emitted from a given material when atoms are bombarded with suitable projectiles like electrons, protons, particles or photons has been successfully used for non-destructive elemental analysis in many applications, especially in the analysis of ceramic glasses. Use of radioisotopes as a source of excitation radiation in combination with high resolution semiconductor detectors in x-ray fluorescence has found wide applications in elemental analysis. A radioisotope excited X-ray fluorescence spectrometer consisting of a standard 5.45mm Si(Li) detector having a resolution of 200 eV at 5.9 keV coupled to a TRUMP-8K multichannel analyzer has been used. Tow sources of annular geometry using 10 mCi 109Cd and 10 mCi 55Fe together with PC AXIL software have been used for this study of tile-pavement glasses of ''Ksar Said'' in Tunisia. Analytical data shows that those tile pavement witch are broken in the 19th century from France (Marseille) have not the same composition of Tunisian tile pavement. Referring to our data, The kind of that analyzed glasses is of alkaline lead. we found also, through this study, the elemental compositions of different pigments (green, blue, brownish, yellow, white and red) used to color that tile-pavement glasses. (author). 21 refs

  12. Response and Uniformity Studies of Directly Coupled Tiles

    International Nuclear Information System (INIS)

    Zutshi, Vishnu

    2010-01-01

    A finely-segmented scintillator-based calorimeter which capitalizes on the marriage of proven detection techniques with novel solid-state photo-detector devices such as Multi-pixel Photon Counters (MPPCs) is an interesting calorimetric system from the point of view of future detector design. A calorimeter system consisting of millions of channels will require a high degree of integration. The first steps towards this integration have already been facilitated by the small size and magnetic field immunity of the MPPCs. The photo-conversion occurs right at the tile, thus obviating the need for routing of long clear fibers. Similar considerations apply to the presence of wave-length shifting (WLS) fibers inside the tiles which couple it to the photo-detectors. Significant simplification in construction and assembly ensue if the MPPCs can be coupled directly to the scintillator tiles. Equally importantly, the total absence of fibers would offer greater flexibility in the choice of the transverse segmentation while enhancing the electro-mechanical integrability of the design. The NIU high-energy physics group has been studying the fiberless or direct-coupling option for some time now. Encouraging results on response and response uniformity have been obtained using radioactive sources. This MOU seeks to set up a framework to extend these tests using beams at the MTBF. The results will be relevant to high granularity scintillator/crystal electromagnetic and hadronic calorimetry. The tests involve a set of small directly-coupled tile counters fabricated at NIU which will be placed in the beam to study their response and response uniformity as a function of the incident position of the particles passing through them.

  13. Response and Uniformity Studies of Directly Coupled Tiles

    Energy Technology Data Exchange (ETDEWEB)

    Zutshi, Vishnu

    2010-04-02

    A finely-segmented scintillator-based calorimeter which capitalizes on the marriage of proven detection techniques with novel solid-state photo-detector devices such as Multi-pixel Photon Counters (MPPCs) is an interesting calorimetric system from the point of view of future detector design. A calorimeter system consisting of millions of channels will require a high degree of integration. The first steps towards this integration have already been facilitated by the small size and magnetic field immunity of the MPPCs. The photo-conversion occurs right at the tile, thus obviating the need for routing of long clear fibers. Similar considerations apply to the presence of wave-length shifting (WLS) fibers inside the tiles which couple it to the photo-detectors. Significant simplification in construction and assembly ensue if the MPPCs can be coupled directly to the scintillator tiles. Equally importantly, the total absence of fibers would offer greater flexibility in the choice of the transverse segmentation while enhancing the electro-mechanical integrability of the design. The NIU high-energy physics group has been studying the fiberless or direct-coupling option for some time now. Encouraging results on response and response uniformity have been obtained using radioactive sources. This MOU seeks to set up a framework to extend these tests using beams at the MTBF. The results will be relevant to high granularity scintillator/crystal electromagnetic and hadronic calorimetry. The tests involve a set of small directly-coupled tile counters fabricated at NIU which will be placed in the beam to study their response and response uniformity as a function of the incident position of the particles passing through them.

  14. Solving Vertex Cover Problem Using DNA Tile Assembly Model

    Directory of Open Access Journals (Sweden)

    Zhihua Chen

    2013-01-01

    Full Text Available DNA tile assembly models are a class of mathematically distributed and parallel biocomputing models in DNA tiles. In previous works, tile assembly models have been proved be Turing-universal; that is, the system can do what Turing machine can do. In this paper, we use tile systems to solve computational hard problem. Mathematically, we construct three tile subsystems, which can be combined together to solve vertex cover problem. As a result, each of the proposed tile subsystems consists of Θ(1 types of tiles, and the assembly process is executed in a parallel way (like DNA’s biological function in cells; thus the systems can generate the solution of the problem in linear time with respect to the size of the graph.

  15. 2-D tiles declustering method based on virtual devices

    Science.gov (United States)

    Li, Zhongmin; Gao, Lu

    2009-10-01

    Generally, 2-D spatial data are divided as a series of tiles according to the plane grid. To satisfy the effect of vision, the tiles in the query window including the view point would be displayed quickly at the screen. Aiming at the performance difference of real storage devices, we propose a 2-D tiles declustering method based on virtual device. Firstly, we construct a group of virtual devices which have same storage performance and non-limited capacity, then distribute the tiles into M virtual devices according to the query window of 2-D tiles. Secondly, we equably map the tiles in M virtual devices into M equidistant intervals in [0, 1) using pseudo-random number generator. Finally, we devide [0, 1) into M intervals according to the tiles distribution percentage of every real storage device, and distribute the tiles in each interval in the corresponding real storage device. We have designed and realized a prototype GlobeSIGht, and give some related test results. The results show that the average response time of each tile in the query window including the view point using 2-D tiles declustering method based on virtual device is more efficient than using other methods.

  16. Synthetic flux as a whitening agent for ceramic tiles

    Energy Technology Data Exchange (ETDEWEB)

    Rodrigues dos Santos, Geocris, E-mail: geocris.rodrigues@gmail.com [INNOVARE Inteligência Em Cerâmica, 13566-420 São Carlos, SP (Brazil); Departamento De Engenharia Dos Materiais, Universidade Federal De São Carlos, 13565-905 São Carlos, SP (Brazil); Salvetti, Alfredo Roque [Departamento De Física, Universidade Federal De Mato Grosso Do Sul (Brazil); Cabrelon, Marcelo Dezena [INNOVARE Inteligência Em Cerâmica, 13566-420 São Carlos, SP (Brazil); Departamento De Engenharia Dos Materiais, Universidade Federal De São Carlos, 13565-905 São Carlos, SP (Brazil); Morelli, Márcio Raymundo [Departamento De Engenharia Dos Materiais, Universidade Federal De São Carlos, 13565-905 São Carlos, SP (Brazil)

    2014-12-05

    Highlights: • The synthetic flux acts as a whitening agent of firing color in raw material ceramics. • The raw material ceramics have high levels of the iron oxides and red color. • The different process obtained red color clays with hematite and illite phases. • The whiteness ceramic obtained herein can be used in a porcelain tile industry. - Abstract: A synthetic flux is proposed as a whitening agent of firing color in tile ceramic paste during the sinterization process, thus turning the red firing color into whiteness. By using this mechanism in the ceramic substrates, the stoneware tiles can be manufactured using low cost clays with high levels of iron oxides. This method proved to be an economical as well as commercial strategy for the ceramic tile industries because, in Brazil, the deposits have iron compounds as mineral component (Fe{sub 2}O{sub 3}) in most of the raw materials. Therefore, several compositions of tile ceramic paste make use of natural raw materials, and a synthetic flux in order to understand how the interaction of the iron element, in the mechanism of firing color ceramic, occurs in this system. The bodies obtained were fired at 1100 °C for 5 min in air atmosphere to promote the color change. After the heating, the samples were submitted to X-ray diffraction (XRD) and Scanning Electron Microscope (SEM) analyses. The results showed that the change of firing color occurs because the iron element, which is initially in the crystal structure of the hematite phase, is transformed into a new crystal (clinopyroxenes phase) formed during the firing, so as to make the final firing color lighter.

  17. Performance of the ATLAS hadronic Tile calorimeter

    CERN Document Server

    AUTHOR|(INSPIRE)INSPIRE-00304670; The ATLAS collaboration

    2016-01-01

    The Tile Calorimeter (TileCal) of the ATLAS experiment at the LHC is the central hadronic calorimeter designed for energy reconstruction of hadrons, jets, tau-particles and missing transverse energy. TileCal is a scintillator-steel sampling calorimeter and it covers the region of pseudorapidity < 1.7. The scintillation light produced in the scintillator tiles is transmitted to photomultiplier tubes (PMTs). Signals from the PMTs are amplified, shaped and digitized by sampling the signal every 25 ns. Each stage of the signal production from scintillation light to the signal reconstruction is monitored and calibrated. Results on the calorimeter operation and performance are presented, including the calibration, stability, absolute energy scale, uniformity and time resolution. These results show that the TileCal performance is within the design requirements and has given essential contribution to reconstructed objects and physics results.

  18. Modular robotic tiles: experiments for children with autism

    DEFF Research Database (Denmark)

    Lund, Henrik Hautop; Dam Pedersen, Martin; Beck, Richard

    2009-01-01

    rehabilitation), and with the proper radio communication mechanism they may give unique possibilities for documentation of the physical activity (e.g., therapeutic treatment). A major point of concern in modular robotics is the connection mechanism, so we investigated different solutions for the connection......We developed a modular robotic tile and a system composed of a number of these modular robotic tiles. The system composed of the modular robotic tiles engages the user in physical activities, e.g., physiotherapy, sports, fitness, and entertainment. The modular robotic tiles motivate the user...... to perform physical activities by providing immediate feedback based upon their physical interaction with the system. With the modular robotic tiles, the user is able to make new physical set-ups within less than a minute. The tiles are applicable for different forms of physical activities (e.g., therapeutic...

  19. Annotating breast cancer microarray samples using ontologies

    Science.gov (United States)

    Liu, Hongfang; Li, Xin; Yoon, Victoria; Clarke, Robert

    2008-01-01

    As the most common cancer among women, breast cancer results from the accumulation of mutations in essential genes. Recent advance in high-throughput gene expression microarray technology has inspired researchers to use the technology to assist breast cancer diagnosis, prognosis, and treatment prediction. However, the high dimensionality of microarray experiments and public access of data from many experiments have caused inconsistencies which initiated the development of controlled terminologies and ontologies for annotating microarray experiments, such as the standard microarray Gene Expression Data (MGED) ontology (MO). In this paper, we developed BCM-CO, an ontology tailored specifically for indexing clinical annotations of breast cancer microarray samples from the NCI Thesaurus. Our research showed that the coverage of NCI Thesaurus is very limited with respect to i) terms used by researchers to describe breast cancer histology (covering 22 out of 48 histology terms); ii) breast cancer cell lines (covering one out of 12 cell lines); and iii) classes corresponding to the breast cancer grading and staging. By incorporating a wider range of those terms into BCM-CO, we were able to indexed breast cancer microarray samples from GEO using BCM-CO and MGED ontology and developed a prototype system with web interface that allows the retrieval of microarray data based on the ontology annotations. PMID:18999108

  20. Tests with beam setup of the TileCal Phase-II upgrade electronics

    CERN Document Server

    Hlaluku, Dingane Reward; The ATLAS collaboration

    2017-01-01

    The LHC has planned a series of upgrades culminating in the High Luminosity LHC (HL-LHC) which will have an average luminosity 5-7 times larger than the nominal Run-2 value. The ATLAS Tile Calorimeter (TileCal) will undergo an upgrade to accommodate to the HL-LHC parameters. The TileCal electronics both on- and off-detector will be completely redesigned and a new readout architecture will be adopted. The photomultiplier signals will be digitised and transferred to the TileCal PreProcessors (PPr) located off-detector for every bunch crossing. Then, the PPr will provide preprocessed digital data to the first level trigger with improved spatial granularity and energy resolution with respect to the current analog trigger signals. We plan to insert one TileCal module instrumented with the new electronics in the real detector to evaluate and qualify the new readout and trigger concepts in the overall ATLAS data acquisition system. This new drawer, so-called Hybrid Demonstrator, must provide analog trigger signal fo...

  1. Introductory Tiling Theory for Computer Graphics

    CERN Document Server

    Kaplan, Craig

    2009-01-01

    Tiling theory is an elegant branch of mathematics that has applications in several areas of computer science. The most immediate application area is graphics, where tiling theory has been used in the contexts of texture generation, sampling theory, remeshing, and of course the generation of decorative patterns. The combination of a solid theoretical base (complete with tantalizing open problems), practical algorithmic techniques, and exciting applications make tiling theory a worthwhile area of study for practitioners and students in computer science. This synthesis lecture introduces the math

  2. Microarray of DNA probes on carboxylate functional beads surface

    Institute of Scientific and Technical Information of China (English)

    黄承志; 李原芳; 黄新华; 范美坤

    2000-01-01

    The microarray of DNA probes with 5’ -NH2 and 5’ -Tex/3’ -NH2 modified terminus on 10 um carboxylate functional beads surface in the presence of 1-ethyl-3-(3-dimethylaminopropyl)-carbodiimide (EDC) is characterized in the preseni paper. it was found that the microarray capacity of DNA probes on the beads surface depends on the pH of the aqueous solution, the concentra-tion of DNA probe and the total surface area of the beads. On optimal conditions, the minimum distance of 20 mer single-stranded DNA probe microarrayed on beads surface is about 14 nm, while that of 20 mer double-stranded DNA probes is about 27 nm. If the probe length increases from 20 mer to 35 mer, its microarray density decreases correspondingly. Mechanism study shows that the binding mode of DNA probes on the beads surface is nearly parallel to the beads surface.

  3. Microarray of DNA probes on carboxylate functional beads surface

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    The microarray of DNA probes with 5′-NH2 and 5′-Tex/3′-NH2 modified terminus on 10 m m carboxylate functional beads surface in the presence of 1-ethyl-3-(3-dimethylaminopropyl)- carbodiimide (EDC) is characterized in the present paper. It was found that the microarray capacity of DNA probes on the beads surface depends on the pH of the aqueous solution, the concentration of DNA probe and the total surface area of the beads. On optimal conditions, the minimum distance of 20 mer single-stranded DNA probe microarrayed on beads surface is about 14 nm, while that of 20 mer double-stranded DNA probes is about 27 nm. If the probe length increases from 20 mer to 35 mer, its microarray density decreases correspondingly. Mechanism study shows that the binding mode of DNA probes on the beads surface is nearly parallel to the beads surface.

  4. Glazed Tiles as Floor Finish in Nigeria

    Directory of Open Access Journals (Sweden)

    Toyin Emmanuel AKINDE

    2013-09-01

    Full Text Available Tile is no doubt rich in antiquity; its primordial  show, came as mosaic with primary prospect in sacred floor finish before its oblivion, courtesy of, later consciousness towards wall finish in banquets, kitchens, toilets, restaurants and even bars. Today, its renaissance as floor finish is apparent in private and public architectural structures with prevalence in residential, recreational, commercial, governmental and other spaces. In Nigeria, the use of glazed tiles as floor finish became apparent, supposedly in mid-twentieth century; and has since, witnessed ever increasing demands from all sundry; a development that is nascent and has necessitated its mass  production locally with pockets of firms in the country. The latter however, is a resultant response to taste cum glazed tiles affordability, whose divergent sophistication in design, colour, size and shape is believed preferred to terrazzo, carpet and floor flex tile. Accessible as glazed tile and production is, in recent times; its dearth of a holistic literature in Nigeria is obvious. In the light of the latter, this paper examine glazed tiles as floor finish in Nigeria, its advent, usage, production, challenge, benefit and prospect with the hope of opening further frontier in discipline specifics.

  5. Clock Distribution and Readout Architecture for the ATLAS Tile Calorimeter at the HL-LHC

    CERN Document Server

    Carrio Argos, Fernando; The ATLAS collaboration

    2018-01-01

    The Tile Calorimeter (TileCal) is one detector of the ATLAS experiment at the Large Hadron Collider (LHC). TileCal is a sampling calorimeter made of steel plates and plastic scintillators which are readout using approximately 10,000 PhotoMultipliers Tubes (PMTs). In 2024, the LHC will undergo a series of upgrades towards a High Luminosity LHC (HL-LHC) to deliver up to 7.5 times the current nominal instantaneous luminosity. The ATLAS Tile Phase II Upgrade will accommodate detector and data acquisition system to the HL-LHC requirements. The detector electronics will be redesigned using a new clock distribution and readout architecture with a full-digital trigger system. After the Long Shutdown 3 (2024-2026), the on-detector electronics will transfer digitized data for every bunch crossing (~25 ns) to the Tile PreProcessors (TilePPr) in the counting rooms with a total data bandwidth of 40 Tbps. The TilePPrs will store the detector data in pipeline memories to cope with the new ATLAS DAQ architecture requirements...

  6. Detection of beta radiation emitted from painted tiles

    International Nuclear Information System (INIS)

    Caldas, L.V.E.

    1987-01-01

    At the Krafwerk Union (KWU), Erlangen, Germany, it was confirmed that some types of painted tiles of italian origin were radioactive. In this Work, performed at Institut fur Strahlenschutz, GSF, Germany, ultrathin 60μm) thermoluminescent samples of CaSO 4 :Tm were used for the determination of absorved dose rates in air (at the tile surface and at distance of 5cm from it) and of transmission factors for different tissue equivalent material thicknesses. For comparison the absorved dose rates in air from cement walls without tile revestment and with simple tile revestment (tiles without painted ornaments) were also determined. In these cases the results were the same as those obtained normally from building materials. (Author) [pt

  7. Tile Drainage Expansion Detection using Satellite Soil Moisture Dynamics

    Science.gov (United States)

    Jacobs, J. M.; Cho, E.; Jia, X.

    2017-12-01

    In the past two decades, tile drainage installation has accelerated throughout the Red River of the North Basin (RRB) in parts of western Minnesota, eastern North Dakota, and a small area of northeastern South Dakota, because the flat topography and low-permeability soils in this region necessitated the removal of excess water to improve crop production. Interestingly, streamflow in the Red River has markedly increased and six of 13 major floods during the past century have occurred since the late 1990s. It has been suggested that the increase in RRB flooding could be due to change in agricultural practices, including extensive tile drainage installation. Reliable information on existing and future tile drainage installation is greatly needed to capture the rapid extension of tile drainage systems and to locate tile drainage systems in the north central U.S. including the RRB region. However, there are few reliable data of tile drainage installation records, except tile drainage permit records in the Bois de Sioux watershed (a sub-basin in southern part of the RRB where permits are required for tile drainage installation). This study presents a tile drainage expansion detection method based on a physical principle that the soil-drying rate may increase with increasing tile drainage for a given area. In order to capture the rate of change in soil drying rate with time over entire RRB (101,500 km2), two satellite-based microwave soil moisture records from the Advanced Microwave Scanning Radiometer for Earth Observing System (AMSR-E) and AMSR2 were used during 2002 to 2016. In this study, a sub-watershed level (HUC10) potential tile drainage growth map was developed and the results show good agreement with tile drainage permit records of six sub-watersheds in the Bois de Sioux watershed. Future analyses will include improvement of the potential tile drainage map through additional information using optical- and thermal-based sensor products and evaluation of its

  8. Beautiful Math, Part 5: Colorful Archimedean Tilings from Dynamical Systems.

    Science.gov (United States)

    Ouyang, Peichang; Zhao, Weiguo; Huang, Xuan

    2015-01-01

    The art of tiling originated very early in the history of civilization. Almost every known human society has made use of tilings in some form or another. In particular, tilings using only regular polygons have great visual appeal. Decorated regular tilings with continuous and symmetrical patterns were widely used in decoration field, such as mosaics, pavements, and brick walls. In science, these tilings provide inspiration for synthetic organic chemistry. Building on previous CG&A “Beautiful Math” articles, the authors propose an invariant mapping method to create colorful patterns on Archimedean tilings (1-uniform tilings). The resulting patterns simultaneously have global crystallographic symmetry and local cyclic or dihedral symmetry.

  9. A design of scintillator tiles read out by surface-mounted SiPMs for a future hadron calorimeter

    Energy Technology Data Exchange (ETDEWEB)

    Liu, Yong; Bauss, Bruno; Buescher, Volker; Caudron, Julien; Chau, Phi; Degele, Reinhold; Geib, Karl-Heinrich; Masetti, Lucia; Schaefer, Ulrich; Tapprogge, Stefan; Wanke, Rainer [Institut fuer Physik and PRISMA Detector Lab, Johannes Gutenberg-Universitaet Mainz (Germany)

    2015-07-01

    Precision calorimetry using highly granular sampling calorimeters is being developed based on the particle flow concept within the CALICE collaboration. One design option of a hadron calorimeter is based on silicon photomultipliers (SiPMs) to detect photons generated in plastic scintillator tiles. Driven by the need of automated mass assembly of around ten millions of channels stringently required by the high granularity, we developed a design of scintillator tiles directly coupled with surface-mounted SiPMs. A cavity is created in the center of the bottom surface of each tile to provide enough room for the whole SiPM package and to improve collection of the light produced by incident particles penetrating the tile at different positions. The cavity design has been optimized using a GEANT4-based full simulation model to achieve high response to Minimum Ionizing Particles (MIPs) and also good areal uniformity. Cosmic-ray measurements confirms high 1-MIP response for scintillator tiles with an optimized cavity design. Uniformity measurements by scanning the tile area using focused electrons from a beta source show excellent response uniformity. This optimized design is well beyond the requirements for a precision hadron calorimeter.

  10. Equilibrium thermal characteristics of a building integrated photovoltaic tiled roof

    Energy Technology Data Exchange (ETDEWEB)

    Mei, L.; Gottschalg, R.; Loveday, D.L. [Centre for Renewable Energy Systems Technology (CREST), Department of Electronic and Electrical Engineering, Loughborough University, Loughborough, Leicestershire, LE11 3TU (United Kingdom); Infield, D.G. [Institute of Energy and Environment, Department of Electronic and Electrical Engineering, University of Strathclyde, Glasgow, G1 1XW (United Kingdom); Davies, D.; Berry, M. [Solarcentury, 91-94 Lower Marsh Waterloo, London, SE1 7AB (United Kingdom)

    2009-10-15

    Photovoltaic (PV) modules attain high temperatures when exposed to a combination of high radiation levels and elevated ambient temperatures. The temperature rise can be particularly problematic for fully building integrated PV (BIPV) roof tile systems if back ventilation is restricted. PV laminates could suffer yield degradation and accelerated aging in these conditions. This paper presents a laboratory based experimental investigation undertaken to determine the potential for high temperature operation in such a BIPV installation. This is achieved by ascertaining the dependence of the PV roof tile temperature on incident radiation and ambient temperature. A theory based correction was developed to account for the unrealistic sky temperature of the solar simulator used in the experiments. The particular PV roof tiles used are warranted up to an operational temperature of 85 C, anything above this temperature will void the warranty because of potential damage to the integrity of the encapsulation. As a guide for installers, a map of southern Europe has been generated indicating locations where excessive module temperatures might be expected and thus where installation is inadvisable. (author)

  11. Data acquisition and processing in the ATLAS Tile Calorimeter Phase-II Upgrade Demonstrator

    CERN Document Server

    Valero, Alberto; The ATLAS collaboration

    2016-01-01

    The LHC has planned a series of upgrades culminating in the High Luminosity LHC (HL-LHC) which will have an average luminosity 5-7 times larger than the nominal Run-2 value. The ATLAS Tile Calorimeter (TileCal) will undergo an upgrade to accommodate to the HL-LHC parameters. The TileCal read-out electronics will be redesigned introducing a new read-out strategy. The photomultiplier signals will be digitized and transferred to the TileCal PreProcessors (TilePPr) located off-detector for every bunch crossing, requiring a data bandwidth of 80 Tbps. The TilePPr will provide preprocessed information to the first level of trigger and in parallel will store the samples in pipeline memories. The data of the events selected by the trigger system will be transferred to the ATLAS global Data AcQuisition (DAQ) system for further processing. A demonstrator drawer has been built to evaluate the new proposed readout architecture and prototypes of all the components. In the demonstrator, the detector data received in the Til...

  12. Radioactive cDNA microarray in neurospsychiatry

    International Nuclear Information System (INIS)

    Choe, Jae Gol; Shin, Kyung Ho; Lee, Min Soo; Kim, Meyoung Kon

    2003-01-01

    Microarray technology allows the simultaneous analysis of gene expression patterns of thousands of genes, in a systematic fashion, under a similar set of experimental conditions, thus making the data highly comparable. In some cases arrays are used simply as a primary screen leading to downstream molecular characterization of individual gene candidates. In other cases, the goal of expression profiling is to begin to identify complex regulatory networks underlying developmental processes and disease states. Microarrays were originally used with cell lines or other simple model systems. More recently, microarrays have been used in the analysis of more complex biological tissues including neural systems and the brain. The application of cDNA arrays in neuropsychiatry has lagged behind other fields for a number of reasons. These include a requirement for a large amount of input probe RNA in fluorescent-glass based array systems and the cellular complexity introduced by multicellular brain and neural tissues. An additional factor that impacts the general use of microarrays in neuropsychiatry is the lack of availability of sequenced clone sets from model systems. While human cDNA clones have been widely available, high quality rat, mouse, and drosophilae, among others are just becoming widely available. A final factor in the application of cDNA microarrays in neuropsychiatry is cost of commercial arrays. As academic microarray facilitates become more commonplace custom made arrays will become more widely available at a lower cost allowing more widespread applications. In summary, microarray technology is rapidly having an impact on many areas of biomedical research. Radioisotope-nylon based microarrays offer alternatives that may in some cases be more sensitive, flexible, inexpensive, and universal as compared to other array formats, such as fluorescent-glass arrays. In some situations of limited RNA or exotic species, radioactive membrane microarrays may be the most

  13. Radioactive cDNA microarray in neurospsychiatry

    Energy Technology Data Exchange (ETDEWEB)

    Choe, Jae Gol; Shin, Kyung Ho; Lee, Min Soo; Kim, Meyoung Kon [Korea University Medical School, Seoul (Korea, Republic of)

    2003-02-01

    Microarray technology allows the simultaneous analysis of gene expression patterns of thousands of genes, in a systematic fashion, under a similar set of experimental conditions, thus making the data highly comparable. In some cases arrays are used simply as a primary screen leading to downstream molecular characterization of individual gene candidates. In other cases, the goal of expression profiling is to begin to identify complex regulatory networks underlying developmental processes and disease states. Microarrays were originally used with cell lines or other simple model systems. More recently, microarrays have been used in the analysis of more complex biological tissues including neural systems and the brain. The application of cDNA arrays in neuropsychiatry has lagged behind other fields for a number of reasons. These include a requirement for a large amount of input probe RNA in fluorescent-glass based array systems and the cellular complexity introduced by multicellular brain and neural tissues. An additional factor that impacts the general use of microarrays in neuropsychiatry is the lack of availability of sequenced clone sets from model systems. While human cDNA clones have been widely available, high quality rat, mouse, and drosophilae, among others are just becoming widely available. A final factor in the application of cDNA microarrays in neuropsychiatry is cost of commercial arrays. As academic microarray facilitates become more commonplace custom made arrays will become more widely available at a lower cost allowing more widespread applications. In summary, microarray technology is rapidly having an impact on many areas of biomedical research. Radioisotope-nylon based microarrays offer alternatives that may in some cases be more sensitive, flexible, inexpensive, and universal as compared to other array formats, such as fluorescent-glass arrays. In some situations of limited RNA or exotic species, radioactive membrane microarrays may be the most

  14. Performance of the ATLAS hadronic Tile calorimeter

    CERN Document Server

    Van Daalen, Tal Roelof; The ATLAS collaboration

    2018-01-01

    Performance of the ATLAS hadronic Tile calorimeter The Tile Calorimeter (TileCal) of the ATLAS experiment at the LHC is the central hadronic calorimeter designed for the reconstruction of hadrons, jets, tau-particles and missing transverse energy. TileCal is a scintillator-steel sampling calorimeter and it covers the region of pseudorapidity < 1.7. The scintillation light produced in the scintillator tiles is transmitted by wavelength shifting fibers to photomultiplier tubes (PMTs). The analog signals from the PMTs are amplified, shaped and digitized every 25 ns by sampling the signal. About 10000 channels of the front-end electronics measure the signals of the calorimeter with energies ranging from ~30 MeV to ~2 TeV. Each step of the signal reconstruction from scintillation light to the digital pulse reconstruction is monitored and calibrated. The performance of the calorimeter has been studied in-situ employing cosmic ray muons and a large sample of proton-proton collisions acquired during the operations...

  15. Characterization of particulate and dissolved phosphorus in tile and nearby riverine systems

    Science.gov (United States)

    Jiang, X.; Arai, Y.; David, M.; Gentry, L.

    2017-12-01

    In the Midwestern U.S., the drainage of agricultural land is predominantly managed by the tile drain system because of its poorly drain properties of clay rich indigenous soils. An accelerated subsurface flow of phosphorus (P) has recently been documented as a primary P transport path in contrast to the typical surface runoff events observed in the Eastern U.S. Recent studies suggested the important role of particulate P (PP) load in agricultural tile drainage water during high flow events. It was hypothesized that PP in the tile water is transported to riverine system contributing to the negative environmental impacts in the Midwestern U.S. In this study, correlation assessment of physicochemical properties of PP in agricultural tile drainage and nearby river samples after a storm event was conducted using a combination of 31P-nuclear magnetic resonance spectroscopy, P K-edge X-ray absorption near edge structure spectroscopy, X-ray diffraction, zetasizer, and transmission electron microscopy. Results show that significantly more colloidal (i.e. 1 nm- 2 µm) and silt-sized (i.e. > 2 µm) particles as well as higher dissolved total P (DTP) and dissolved reactive P (DRP) concentrations existed in river samples than tile samples. Tile and river samples showed similar zeta potential in each particle-size fraction and similar element distributions on colloidal fraction. However, colloidal P concentration and distribution are slightly different between tile and river samples: more colloidal total P and organic P existed in tile colloids than river colloids. The results of P speciation and mineralogical assessment will also be discussed.

  16. Tile Calorimeter Upgrade Program for the Luminosity Increasing at the LHC

    CERN Document Server

    Cerqueira, Augusto Santiago; The ATLAS collaboration

    2015-01-01

    The Tile Calorimeter (TileCal) is the central hadronic calorimeter of the ATLAS experiment at the Large Hadron Collider (LHC). TileCal is a sampling calorimeter with approximately 10,000 channels and is operating successfully (data quality efficiency above 99%) in ATLAS, since the start of the LHC collisions. The LHC is scheduled to undergo a major upgrade, in 2022, for the High Luminosity LHC (HL-LHC), where the luminosity will be increased by a factor of 10 above the original design value. The ATLAS upgrade program for high luminosity is split into three phases: Phase 0 occurred during 2013-2014 (Long Shutdown 1), and prepared the LHC for run 2; Phase 1, foreseen for 2019 (Long Shutdown 2), will prepare the LHC for run 3, whereafter the peak luminosity reaches 2-3 x 10^{34} cm^{2}s^{-1}; finally, Phase 2, which is foreseen for 2024 (Long Shutdown 3), will prepare the collider for the HL-LHC operation (5-7 x 10^{34} cm^{2}s^{-1}). The TileCal main activities for Phase 0 were the installation of the new low v...

  17. Tile Calorimeter Upgrade Program for the Luminosity Increasing at the LHC

    CERN Document Server

    Cerqueira, Augusto Santiago; The ATLAS collaboration

    2015-01-01

    The Tile Calorimeter (TileCal) is the central hadronic calorimeter of the ATLAS experiment at the Large Hadron Collider (LHC). TileCal is a sampling calorimeter with approximately 10,000 channels and is operating successfully (data quality efficiency above 99%) in ATLAS, since the start of the LHC collisions. The LHC is scheduled to undergo a major upgrade, in 2022, for the High Luminosity LHC (HL-LHC), where the luminosity will be increased by a factor of 10 above the original design value. The ATLAS upgrade program for high luminosity is split into three phases: Phase 0 occurred during 2013-2014 (Long Shutdown 1), and prepared the LHC for run 2; Phase 1, foreseen for 2019 (Long Shutdown 2), will prepare the LHC for run 3, whereafter the peak luminosity reaches 2-3 x 10^{34} cm^{2}s^{-1}; finally, Phase 2, which is foreseen for 2023 (Long Shutdown 3), will prepare the collider for the HL-LHC operation (5-7 x 10^{34} cm^{2}s^{-1}). The TileCal main activities for Phase 0 were the installation of the new low v...

  18. Extension of electron cyclotron heating at ASDEX Upgrade with respect to high density operation

    Directory of Open Access Journals (Sweden)

    Schubert Martin

    2017-01-01

    Full Text Available The ASDEX Upgrade electron cyclotron resonance heating operates at 105 GHz and 140 GHz with flexible launching geometry and polarization. In 2016 four Gyrotrons with 10 sec pulse length and output power close to 1 MW per unit were available. The system is presently being extended to eight similar units in total. High heating power and high plasma density operation will be a part of the future ASDEX Upgrade experiment program. For the electron cyclotron resonance heating, an O-2 mode scheme is proposed, which is compatible with the expected high plasma densities. It may, however, suffer from incomplete single-pass absorption. The situation can be improved significantly by installing holographic mirrors on the inner column, which allow for a second pass of the unabsorbed fraction of the millimetre wave beam. Since the beam path in the plasma is subject to refraction, the beam position on the holographic mirror has to be controlled. Thermocouples built into the mirror surface are used for this purpose. As a protective measure, the tiles of the heat shield on the inner column were modified in order to increase the shielding against unabsorbed millimetre wave power.

  19. Detection of beta radiation emitted from painted tiles

    International Nuclear Information System (INIS)

    Caldas, L.V.E.

    1988-06-01

    At the Kraftwerk Union (KWU), Erlangen, Federal Republic of Germany, it was confirmed that some types of painted tiles of italian origin were radioactive. In this work, performed at Institut fur Strahlenschutz, GSF, Munich, Germany, ultra-thin (60μm) thermoluminescent samples of CaSO 4 :Tm were used for the determination of absorved dose rates in air (at the tile surface and at the distance of 5 cm from it) and of transmission factors for different tissue equivalent material thicknesses. For comparison the absorved dose rates in air from cement walls without tile revestment and with simple tile revestment (tiles without painted ornaments) were also determined. In these cases the results were the same as those obtained normally from building materials. (author) [pt

  20. Massively multiplexed microbial identification using resequencing DNA microarrays for outbreak investigation

    Science.gov (United States)

    Leski, T. A.; Ansumana, R.; Jimmy, D. H.; Bangura, U.; Malanoski, A. P.; Lin, B.; Stenger, D. A.

    2011-06-01

    Multiplexed microbial diagnostic assays are a promising method for detection and identification of pathogens causing syndromes characterized by nonspecific symptoms in which traditional differential diagnosis is difficult. Also such assays can play an important role in outbreak investigations and environmental screening for intentional or accidental release of biothreat agents, which requires simultaneous testing for hundreds of potential pathogens. The resequencing pathogen microarray (RPM) is an emerging technological platform, relying on a combination of massively multiplex PCR and high-density DNA microarrays for rapid detection and high-resolution identification of hundreds of infectious agents simultaneously. The RPM diagnostic system was deployed in Sierra Leone, West Africa in collaboration with Njala University and Mercy Hospital Research Laboratory located in Bo. We used the RPM-Flu microarray designed for broad-range detection of human respiratory pathogens, to investigate a suspected outbreak of avian influenza in a number of poultry farms in which significant mortality of chickens was observed. The microarray results were additionally confirmed by influenza specific real-time PCR. The results of the study excluded the possibility that the outbreak was caused by influenza, but implicated Klebsiella pneumoniae as a possible pathogen. The outcome of this feasibility study confirms that application of broad-spectrum detection platforms for outbreak investigation in low-resource locations is possible and allows for rapid discovery of the responsible agents, even in cases when different agents are suspected. This strategy enables quick and cost effective detection of low probability events such as outbreak of a rare disease or intentional release of a biothreat agent.

  1. Characterization of non-calcareous 'thin' red clay from south-eastern Brazil: applicability in wall tile manufacture

    Energy Technology Data Exchange (ETDEWEB)

    Sousa, S.J.G.; Holanda, J.N.F., E-mail: sidnei_rjsousa@yahoo.com.br, E-mail: holanda@uenf.br [Grupo de Materiais Ceramicos - LAMAV-CCT, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Campos dos Goytacazes, RJ (Brazil)

    2012-04-15

    In this work the use of 'thin' red clay from south-eastern Brazil (Campos dos Goytacazes, RJ) as raw material for the manufacture of wall tile was investigated. A wide range of characterization techniques was employed, including X-ray diffraction (XRD), X-ray fluorescence (XRF), scanning electron microscopy (SEM), grain-size analysis, and thermogravimetric analysis. The wall tile body was prepared by the dry process. The tile pieces were uniaxially pressed and fired between 1080 - 1180 deg C using a fast-firing cycle. The following technological properties were determined: linear shrinkage, water absorption, apparent density, and flexural strength. The development of the microstructure was followed by SEM and XRD analyses. It was found that the 'thin' red clay is kaolinitic type containing a substantial amount of quartz. The results also showed that the 'thin' red clay could be used in the manufacture of wall tiles, as they present properties compatible with those specified for class BIII of ISO 13006 standard. (author)

  2. Effects of occupational exposures and smoking on lung function in tile factory workers.

    Science.gov (United States)

    Jaakkola, Maritta S; Sripaiboonkij, Penpatra; Jaakkola, Jouni J K

    2011-02-01

    The aims of this study were to investigate the relations of occupational exposures in tile industry to lung function and to evaluate potential interaction between smoking and tile dust exposure containing silica. A cross-sectional study of 232 workers (response rate 100%) in a tile factory and 76 office workers (response rate 73%) from four factories in Thailand was conducted in 2006-2007. Participants answered a questionnaire and performed spirometry. Factory workers had lower spirometric functions than office workers, especially those with high dust exposure. There was a dose-response relation between duration of dust exposure and FEV1 and FVC, the adjusted effect of ≥ 21 years of exposure on FEV1 being -240 ml (-100 to -380) and on FVC -300 ml (-140 to -460). The adverse effect of dust on lung function was larger in current smokers suggesting synergism between smoking and tile dust exposure. This study provides evidence that long-term exposure to dust in tile industry is related to lung function reduction. There was a suggestion of synergistic effect between dust exposure and smoking. Tile factories should consider measures to reduce dust exposure and arrange spirometry surveillance for workers with such exposure. Smoking cessation should be promoted to prevent harmful effects of occupational tile dust exposure.

  3. Tiling by rectangles and alternating current

    KAUST Repository

    Prasolov, M. V.; Skopenkov, Mikhail

    2011-01-01

    This paper is on tilings of polygons by rectangles. A celebrated physical interpretation of such tilings by R.L. Brooks, C.A.B. Smith, A.H. Stone and W.T. Tutte uses direct-current circuits. The new approach of this paper is an application

  4. Upgrade of the ATLAS Tile hadronic calorimeter for high-luminosity LHC run

    Energy Technology Data Exchange (ETDEWEB)

    Spoor, Matthew

    2017-02-11

    The ATLAS Tile Calorimeter (TileCal) will undergo a major replacement of its on- and off-detector electronics for the Long Shutdown 3 that is planned for 2024 and 2025. All signals will be digitised and transferred directly to the off-detector electronics, where the signals are reconstructed, stored, and sent to the first level of trigger at a rate of 40 MHz. This will provide better precision of the calorimeter signals used by the trigger system and will allow the development of more complex trigger algorithms. Changes to the electronics will also contribute to the reliability and redundancy of the system. Three different front-end options are presently being investigated for the upgrade and will be chosen after extensive test beam studies. A Hybrid Demonstrator module has been developed. The demonstrator is undergoing extensive testing and is planned for insertion in ATLAS.

  5. Upgrade of the ATLAS Tile hadronic calorimeter for high-luminosity LHC run

    International Nuclear Information System (INIS)

    Spoor, Matthew

    2017-01-01

    The ATLAS Tile Calorimeter (TileCal) will undergo a major replacement of its on- and off-detector electronics for the Long Shutdown 3 that is planned for 2024 and 2025. All signals will be digitised and transferred directly to the off-detector electronics, where the signals are reconstructed, stored, and sent to the first level of trigger at a rate of 40 MHz. This will provide better precision of the calorimeter signals used by the trigger system and will allow the development of more complex trigger algorithms. Changes to the electronics will also contribute to the reliability and redundancy of the system. Three different front-end options are presently being investigated for the upgrade and will be chosen after extensive test beam studies. A Hybrid Demonstrator module has been developed. The demonstrator is undergoing extensive testing and is planned for insertion in ATLAS.

  6. PROTVINO: Mass-production of scintillator tiles by injection moulding

    International Nuclear Information System (INIS)

    Anon.

    1994-01-01

    The technique of the segmented sandwich-calorimeters with wavelength-shifting readout, especially its large-scale application in big detectors, requires enormous quantities of a cheap scintillator tiles of moderate dimensions (20 x 20 cm 2 ). Initial trials carried out in the Institute for High Energy Physics (IHEP), Protvino, Russia almost ten years ago showed that manufacturing such scintillator tiles was possible using an ordinary commercially-available granulated optical polystyrene, an existing technology of plastic dyeing, and a well-known process of the injection moulding, used to produce plastic goods (like buttons!)

  7. Time Calibration of the ATLAS Hadronic Tile Calorimeter using the Laser System

    CERN Document Server

    Clément, C; Solovyanov, O; Vivarelli, I

    2008-01-01

    The ATLAS Tile Calorimeter (TileCal) will be used to measure i) the energy of hadronic showers and ii) the Time of Flight (ToF) of particles passing through it. To allow for optimal reconstruction of the energy deposited in the calorimeter with optimal filtering, the phase between the signal sampling clock and the maximum of the incoming pulses needs to be minimised and the residual difference needs to be measured for later use for both energy and time of flight measurements. In this note we present the timing equalisation of all TileCal read out channels using the TileCal laser calibration system and a measurement of the time differences between the 4 TileCal TTC partitions. The residual phases after timing equalisation have been measured. Several characteristics of the laser calibration system relevant for timing have also been studied and a solution is proposed to take into account the time difference between the high and low gain paths. Finally we discuss the sources of uncertainties on the timing of the ...

  8. Mounting LHCb hadron calorimeter scintillating tiles

    CERN Multimedia

    Maximilien Brice

    2004-01-01

    Scintillating tiles are carefully mounted in the hadronic calorimeter for the LHCb detector. These calorimeters measure the energy of particles that interact via the strong force, called hadrons. The detectors are made in a sandwich-like structure where these scintillator tiles are placed between metal sheets.

  9. Evaluation of the hooghoudt and kirkham tile drain equations in the soil and water assessment tool to simulate tile flow and nitrate-nitrogen.

    Science.gov (United States)

    Moriasi, Daniel N; Gowda, Prasanna H; Arnold, Jeffrey G; Mulla, David J; Ale, Srinivasulu; Steiner, Jean L; Tomer, Mark D

    2013-11-01

    Subsurface tile drains in agricultural systems of the midwestern United States are a major contributor of nitrate-N (NO-N) loadings to hypoxic conditions in the Gulf of Mexico. Hydrologic and water quality models, such as the Soil and Water Assessment Tool, are widely used to simulate tile drainage systems. The Hooghoudt and Kirkham tile drain equations in the Soil and Water Assessment Tool have not been rigorously tested for predicting tile flow and the corresponding NO-N losses. In this study, long-term (1983-1996) monitoring plot data from southern Minnesota were used to evaluate the SWAT version 2009 revision 531 (hereafter referred to as SWAT) model for accurately estimating subsurface tile drain flows and associated NO-N losses. A retention parameter adjustment factor was incorporated to account for the effects of tile drainage and slope changes on the computation of surface runoff using the curve number method (hereafter referred to as Revised SWAT). The SWAT and Revised SWAT models were calibrated and validated for tile flow and associated NO-N losses. Results indicated that, on average, Revised SWAT predicted monthly tile flow and associated NO-N losses better than SWAT by 48 and 28%, respectively. For the calibration period, the Revised SWAT model simulated tile flow and NO-N losses within 4 and 1% of the observed data, respectively. For the validation period, it simulated tile flow and NO-N losses within 8 and 2%, respectively, of the observed values. Therefore, the Revised SWAT model is expected to provide more accurate simulation of the effectiveness of tile drainage and NO-N management practices. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

  10. Tritium distribution on plasma facing graphite tiles of JT-60U

    International Nuclear Information System (INIS)

    Tanabe, T.; Sugiyama, K.; Masaki, K.; Gotoh, Y.; Tobita, K.; Miya, N.

    2003-01-01

    Tritium distributions on the graphite divertor tiles, the dome units and the baffle plates of JT-60U were successfully measured. Poloidally, the highest tritium level was found at the dome top tiles and the outer baffle plates, where the plasma did not hit directly. On the other hand, although the toroidal tritium profiles on each tiles appeared uniform, detailed profiles in full toroidal direction clearly showed a periodic variation corresponding to the position of the magnetic field coils, indicating the ripple loss of high energy tritons as suggested by the OFMC code. Finally, the temperature increase owing to the plasma heat load was found to release the once retained tritium. (author)

  11. Summer and Winter Effect of Innovative Cool Roof Tiles on the Dynamic Thermal Behavior of Buildings

    Directory of Open Access Journals (Sweden)

    Anna Laura Pisello

    2014-04-01

    Full Text Available Cool roofs represent an acknowledged passive cooling technique to reduce building energy consumption for cooling and to mitigate urban heat island effects. This paper concerns the evaluation of the dynamic effect of new cool roof clay tiles on building thermal performance in summer and winter conditions. To this end, these properties have been analyzed on traditional roof brick tiles through an indoor and outdoor two-year long continuous monitoring campaign set up in a residential building located in central Italy. The analysis and the cooperation with industrial companies producing brick tiles and reflective coatings allowed the production of a new tile with notable “cool roof” properties through the traditional industrial manufacturing path of such tiles. Notable results show that during summer the high reflection tiles are able to decrease the average external roof surface temperature by more than 10 °C and the indoor operative temperature by more than 3 °C. During winter the average external surface temperature is lower with high reflection tiles by about 1 °C. Singular optic-thermal phenomena are registered while evaluating the dynamics of the cool roof effect. Interesting findings show how the sloped cool roof application could suggest further considerations about the dynamic effect of cool roofs.

  12. Porcelain tiles by the dry route

    Directory of Open Access Journals (Sweden)

    Boschi, A. O.

    2010-10-01

    Full Text Available In Brazil, the second largest tile producer of the world, at present, 70% of the tiles are produced by the dry route. One of the main reasons that lead to this development is the fact that the dry route uses approximately 30% less thermal energy them the traditional wet route. The increasing world concern with the environment and the recognition of the central role played by the water also has pointed towards privileging dry processes. In this context the objective of the present work is to study the feasibility of producing high quality porcelain tiles by the dry route. A brief comparison of the dry and wet route, in standard conditions industrially used today to produce tiles that are not porcelain tiles, shows that there are two major differences: the particle sizes obtained by the wet route are usually considerably finer and the capability of mixing the different minerals, the intimacy of the mixture, is also usually better in the wet route. The present work studied the relative importance of these differences and looked for raw materials and operational conditions that would result in better performance and glazed porcelain tiles of good quality.

    En Brasil, en este momento segundo productor mundial, el 70% de los pavimentos cerámicos se obtiene por vía seca. Una de las razones fundamentales se debe a que esta vía supone un consumo energético inferior, en un 30%, a la via húmeda tradicional. La creciente preocupación mundial sobre los problemas medioambientales y el reconocimiento del papel central que juega el agua en este proceso han favorecido el desarrollo de la vía seca. En este contexto, el objetivo del presente trabajo es estudiar la viabilidad de la producción de pavimentos porcelánicos de alta calidad por vía seca. Una breve comparación entre ambas vías, en las condiciones standard de producción vigentes para producciones que no son de porcelánico, indican que existen dos diferencias substanciales; el tamaño de

  13. Understanding the Elementary Steps in DNA Tile-Based Self-Assembly.

    Science.gov (United States)

    Jiang, Shuoxing; Hong, Fan; Hu, Huiyu; Yan, Hao; Liu, Yan

    2017-09-26

    Although many models have been developed to guide the design and implementation of DNA tile-based self-assembly systems with increasing complexity, the fundamental assumptions of the models have not been thoroughly tested. To expand the quantitative understanding of DNA tile-based self-assembly and to test the fundamental assumptions of self-assembly models, we investigated DNA tile attachment to preformed "multi-tile" arrays in real time and obtained the thermodynamic and kinetic parameters of single tile attachment in various sticky end association scenarios. With more sticky ends, tile attachment becomes more thermostable with an approximately linear decrease in the free energy change (more negative). The total binding free energy of sticky ends is partially compromised by a sequence-independent energy penalty when tile attachment forms a constrained configuration: "loop". The minimal loop is a 2 × 2 tetramer (Loop4). The energy penalty of loops of 4, 6, and 8 tiles was analyzed with the independent loop model assuming no interloop tension, which is generalizable to arbitrary tile configurations. More sticky ends also contribute to a faster on-rate under isothermal conditions when nucleation is the rate-limiting step. Incorrect sticky end contributes to neither the thermostability nor the kinetics. The thermodynamic and kinetic parameters of DNA tile attachment elucidated here will contribute to the future improvement and optimization of tile assembly modeling, precise control of experimental conditions, and structural design for error-free self-assembly.

  14. Noise dependency with pile-up in the ATLAS Tile Calorimeter

    CERN Document Server

    Araque Espinosa, Juan Pedro; The ATLAS collaboration

    2015-01-01

    The Tile Calorimeter, TileCal, is the central hadronic calorimeter of the ATLAS experiment, positioned between the electromagnetic calorimeter and the muon chambers. It comprises alternating layers of steel (as absorber material) and plastic (as active material), known as tiles. Between 2009 and 2012, the LHC has performed better than expected producing proton-proton collisions at a very high rate. These conditions are really challenging when dealing with the energy measurements in the calorimeter since not only the energy from an interesting event will be measured but a component coming from other collisions which are difficult to distinguish from the interesting one will also be present. This component is referred to as pile-up noise. Studies carried out to better understand how pile-up affects noise under different circumstances are described.

  15. Upgrade of the ATLAS Tile Calorimeter Electronics

    International Nuclear Information System (INIS)

    Carrió, F

    2015-01-01

    The Tile Calorimeter (TileCal) is the hadronic calorimeter covering the central region of the ATLAS experiment at LHC. The TileCal readout consists of about 10000 channels. The bulk of its upgrade will occur for the High Luminosity LHC phase (Phase-II) where the peak luminosity will increase 5 times compared to the design luminosity (10 34 cm −2 s −1 ) but with maintained energy (i.e. 7+7 TeV). An additional increase of the average luminosity with a factor of 2 can be achieved by luminosity levelling. This upgrade is expected to happen around 2024. The TileCal upgrade aims at replacing the majority of the on- and off- detector electronics to the extent that all calorimeter signals will be digitized and sent to the off-detector electronics in the counting room. To achieve the required reliability, redundancy has been introduced at different levels. Three different options are presently being investigated for the front-end electronic upgrade. Extensive test beam studies will determine which option will be selected. 10 Gbps optical links are used to read out all digitized data to the counting room while 5 Gbps down-links are used for synchronization, configuration and detector control. For the off-detector electronics a pre-processor (sROD) is being developed, which takes care of the initial trigger processing while temporarily storing the main data flow in pipeline and derandomizer memories. One demonstrator prototype module with the new calorimeter module electronics, but still compatible with the present system, is planned to be inserted in ATLAS this year

  16. Large-Aperture Grating Tiling by Interferometry for Petawatt Chirped-Pulse--Amplification Systems

    International Nuclear Information System (INIS)

    Qiao, J.; Kalb, A.; Guardalben, M.J.; King, G.; Canning. D.; Kelly, J.H.

    2007-01-01

    A tiled-grating assembly with three large-scale gratings is developed with real-time interferometric tiling control for the OMEGA EP Laser Facility. An automatic tiling method is achieved and used to tile a three-tile grating assembly with the overall wavefront reconstructed. Tiling parameters sensitivity and focal-spot degradation from all combined tiling errors are analyzed for a pulse compressor composed of four such assemblies

  17. A high granularity plastic scintillator tile hadronic calorimeter with APD readout for a linear collider detector

    Czech Academy of Sciences Publication Activity Database

    Andreev, V.; Cvach, Jaroslav; Danilov, M.; Devitsin, E.; Dodonov, V.; Eigen, G.; Garutti, E.; Gilitzky, Yu.; Groll, M.; Heuer, R.D.; Janata, Milan; Kacl, Ivan; Korbel, V.; Kozlov, V. Yu; Meyer, H.; Morgunov, V.; Němeček, Stanislav; Pöschl, R.; Polák, Ivo; Raspereza, A.; Reiche, S.; Rusinov, V.; Sefkow, F.; Smirnov, P.; Terkulov, A.; Valkár, Š.; Weichert, Jan; Zálešák, Jaroslav

    2006-01-01

    Roč. 564, - (2006), s. 144-154 ISSN 0168-9002 R&D Projects: GA MŠk(CZ) LC527; GA MŠk(CZ) 1P05LA259; GA ČR(CZ) GA202/05/0653 Institutional research plan: CEZ:AV0Z10100502 Keywords : hadronic calorimeter * plastic scintillator tile * APD readout * linear collider detector Subject RIV: BF - Elementary Particles and High Energy Physics Impact factor: 1.185, year: 2006

  18. Flexible and efficient genome tiling design with penalized uniqueness score

    Directory of Open Access Journals (Sweden)

    Du Yang

    2012-12-01

    Full Text Available Abstract Background As a powerful tool in whole genome analysis, tiling array has been widely used in the answering of many genomic questions. Now it could also serve as a capture device for the library preparation in the popular high throughput sequencing experiments. Thus, a flexible and efficient tiling array design approach is still needed and could assist in various types and scales of transcriptomic experiment. Results In this paper, we address issues and challenges in designing probes suitable for tiling array applications and targeted sequencing. In particular, we define the penalized uniqueness score, which serves as a controlling criterion to eliminate potential cross-hybridization, and a flexible tiling array design pipeline. Unlike BLAST or simple suffix array based methods, computing and using our uniqueness measurement can be more efficient for large scale design and require less memory. The parameters provided could assist in various types of genomic tiling task. In addition, using both commercial array data and experiment data we show, unlike previously claimed, that palindromic sequence exhibiting relatively lower uniqueness. Conclusions Our proposed penalized uniqueness score could serve as a better indicator for cross hybridization with higher sensitivity and specificity, giving more control of expected array quality. The flexible tiling design algorithm incorporating the penalized uniqueness score was shown to give higher coverage and resolution. The package to calculate the penalized uniqueness score and the described probe selection algorithm are implemented as a Perl program, which is freely available at http://www1.fbn-dummerstorf.de/en/forschung/fbs/fb3/paper/2012-yang-1/OTAD.v1.1.tar.gz.

  19. Finishing of display glass for mobile electronics using 3M Trizact diamond tile abrasive pads

    Science.gov (United States)

    Zheng, Lianbin; Fletcher, Tim; Na, Tee Koon; Sventek, Bruce; Romero, Vince; Lugg, Paul S.; Kim, Don

    2010-10-01

    This paper will describe a new method being used during the finishing of glass displays for mobile electronics including mobile hand held devices and notebook computers. The new method consists of using 3M TrizactTM Diamond Tile Abrasive Pads. TrizactTM Diamond Tile is a structured fixed abrasive grinding technology developed by 3M Company. The TrizactTM Diamond Tile structured abrasive pad consists of an organic (polymeric binder) - inorganic (abrasive mineral, i.e., diamond) composite that is used with a water-based coolant. TrizactTM Diamond Tile technology can be applied in both double and single side grinding applications. A unique advantage of TrizactTM Diamond Tile technology is the combination of high stock removal and low sub-surface damage. Grinding results will be presented for both 9 micron and 20 micron grades of TrizactTM Diamond Tile abrasive pads used to finish several common display glasses including Corning GorillaTM glass and Soda Lime glass.

  20. Self-assembly of Archimedean tilings with enthalpically and entropically patchy polygons.

    Science.gov (United States)

    Millan, Jaime A; Ortiz, Daniel; van Anders, Greg; Glotzer, Sharon C

    2014-03-25

    Considerable progress in the synthesis of anisotropic patchy nanoplates (nanoplatelets) promises a rich variety of highly ordered two-dimensional superlattices. Recent experiments of superlattices assembled from nanoplates confirm the accessibility of exotic phases and motivate the need for a better understanding of the underlying self-assembly mechanisms. Here, we present experimentally accessible, rational design rules for the self-assembly of the Archimedean tilings from polygonal nanoplates. The Archimedean tilings represent a model set of target patterns that (i) contain both simple and complex patterns, (ii) are comprised of simple regular shapes, and (iii) contain patterns with potentially interesting materials properties. Via Monte Carlo simulations, we propose a set of design rules with general applicability to one- and two-component systems of polygons. These design rules, specified by increasing levels of patchiness, correspond to a reduced set of anisotropy dimensions for robust self-assembly of the Archimedean tilings. We show for which tilings entropic patches alone are sufficient for assembly and when short-range enthalpic interactions are required. For the latter, we show how patchy these interactions should be for optimal yield. This study provides a minimal set of guidelines for the design of anisostropic patchy particles that can self-assemble all 11 Archimedean tilings.

  1. Data Quality system of the ATLAS hadronic Tile calorimeter

    International Nuclear Information System (INIS)

    Nemecek, Stanislav

    2012-01-01

    The Tile Calorimeter (TileCal) is the central section of the hadronic calorimeter of the ATLAS experiment. It is subdivided into a large central barrel and two smaller lateral extended barrels. Each barrel consists of 64 wedges, made of iron plates and scintillating tiles. Two edges of each scintillating tile are air-coupled to wave-length shifting (WLS) fibres which collect the scintillating light and transmit it to photo-multipliers. The total number of channels is about 10000. An essential part of the TileCal detector is the Data Quality (DQ) system. The DQ system is designed to check the status of the electronic channels. It is designed to provide information at two levels - online and offline. The online TileCal DQ system monitors continuously the data while they are recorded and provides a fast feedback. The offline DQ system allows a detailed study, if needed it provides corrections to be applied to the recorded data and it allows to validate the data for physics analysis. In addition to the check of physics data the TileCal DQ systems also operate with calibration data. The TileCal calibration system provides well defined signals and the response to the calibration signals allows checking the behaviour of the electronic channels in detail. The Monitoring and Calibration Web System supports data quality analyses at the level of channels. All online, offline and calibration versions of the TileCal DQ system also provide automatic tests, the results of which allow fast and robust feedback.

  2. Serious limitations of the QTL/Microarray approach for QTL gene discovery

    Directory of Open Access Journals (Sweden)

    Warden Craig H

    2010-07-01

    Full Text Available Abstract Background It has been proposed that the use of gene expression microarrays in nonrecombinant parental or congenic strains can accelerate the process of isolating individual genes underlying quantitative trait loci (QTL. However, the effectiveness of this approach has not been assessed. Results Thirty-seven studies that have implemented the QTL/microarray approach in rodents were reviewed. About 30% of studies showed enrichment for QTL candidates, mostly in comparisons between congenic and background strains. Three studies led to the identification of an underlying QTL gene. To complement the literature results, a microarray experiment was performed using three mouse congenic strains isolating the effects of at least 25 biometric QTL. Results show that genes in the congenic donor regions were preferentially selected. However, within donor regions, the distribution of differentially expressed genes was homogeneous once gene density was accounted for. Genes within identical-by-descent (IBD regions were less likely to be differentially expressed in chromosome 2, but not in chromosomes 11 and 17. Furthermore, expression of QTL regulated in cis (cis eQTL showed higher expression in the background genotype, which was partially explained by the presence of single nucleotide polymorphisms (SNP. Conclusions The literature shows limited successes from the QTL/microarray approach to identify QTL genes. Our own results from microarray profiling of three congenic strains revealed a strong tendency to select cis-eQTL over trans-eQTL. IBD regions had little effect on rate of differential expression, and we provide several reasons why IBD should not be used to discard eQTL candidates. In addition, mismatch probes produced false cis-eQTL that could not be completely removed with the current strains genotypes and low probe density microarrays. The reviewed studies did not account for lack of coverage from the platforms used and therefore removed genes

  3. Development and application of high-precision metrology for the ATLAS tile-calorimeter construction (pre-assembly experience and lessons)

    International Nuclear Information System (INIS)

    Batusov, V.Yu.; Budagov, Yu.A.; Khubua, D.I.

    2004-01-01

    In view of the forthcoming ATLAS assembly in the pit the pre-assembly of the Hadron Tile Calorimeter BARRELS was undertaken at the laboratory hall. A complex of metrology methods (laser, photogrammetry, theodolite, mechanic, PREDICTION programme) developed at the principal stages and resulted in successful high-precision erection of the barrels has been described

  4. Microengineering methods for cell-based microarrays and high-throughput drug-screening applications

    International Nuclear Information System (INIS)

    Xu Feng; Wu Jinhui; Wang Shuqi; Gurkan, Umut Atakan; Demirci, Utkan; Durmus, Naside Gozde

    2011-01-01

    Screening for effective therapeutic agents from millions of drug candidates is costly, time consuming, and often faces concerns due to the extensive use of animals. To improve cost effectiveness, and to minimize animal testing in pharmaceutical research, in vitro monolayer cell microarrays with multiwell plate assays have been developed. Integration of cell microarrays with microfluidic systems has facilitated automated and controlled component loading, significantly reducing the consumption of the candidate compounds and the target cells. Even though these methods significantly increased the throughput compared to conventional in vitro testing systems and in vivo animal models, the cost associated with these platforms remains prohibitively high. Besides, there is a need for three-dimensional (3D) cell-based drug-screening models which can mimic the in vivo microenvironment and the functionality of the native tissues. Here, we present the state-of-the-art microengineering approaches that can be used to develop 3D cell-based drug-screening assays. We highlight the 3D in vitro cell culture systems with live cell-based arrays, microfluidic cell culture systems, and their application to high-throughput drug screening. We conclude that among the emerging microengineering approaches, bioprinting holds great potential to provide repeatable 3D cell-based constructs with high temporal, spatial control and versatility.

  5. Microengineering methods for cell-based microarrays and high-throughput drug-screening applications

    Energy Technology Data Exchange (ETDEWEB)

    Xu Feng; Wu Jinhui; Wang Shuqi; Gurkan, Umut Atakan; Demirci, Utkan [Department of Medicine, Demirci Bio-Acoustic-MEMS in Medicine (BAMM) Laboratory, Center for Biomedical Engineering, Brigham and Women' s Hospital, Harvard Medical School, Boston, MA (United States); Durmus, Naside Gozde, E-mail: udemirci@rics.bwh.harvard.edu [School of Engineering and Division of Biology and Medicine, Brown University, Providence, RI (United States)

    2011-09-15

    Screening for effective therapeutic agents from millions of drug candidates is costly, time consuming, and often faces concerns due to the extensive use of animals. To improve cost effectiveness, and to minimize animal testing in pharmaceutical research, in vitro monolayer cell microarrays with multiwell plate assays have been developed. Integration of cell microarrays with microfluidic systems has facilitated automated and controlled component loading, significantly reducing the consumption of the candidate compounds and the target cells. Even though these methods significantly increased the throughput compared to conventional in vitro testing systems and in vivo animal models, the cost associated with these platforms remains prohibitively high. Besides, there is a need for three-dimensional (3D) cell-based drug-screening models which can mimic the in vivo microenvironment and the functionality of the native tissues. Here, we present the state-of-the-art microengineering approaches that can be used to develop 3D cell-based drug-screening assays. We highlight the 3D in vitro cell culture systems with live cell-based arrays, microfluidic cell culture systems, and their application to high-throughput drug screening. We conclude that among the emerging microengineering approaches, bioprinting holds great potential to provide repeatable 3D cell-based constructs with high temporal, spatial control and versatility.

  6. Photovoltaic roofing tile systems

    Science.gov (United States)

    Melchior, B.

    The integration of photovoltaic (PV) systems in architecture is discussed. A PV-solar roofing tile system with polymer concrete base; PV-roofing tile with elastomer frame profiles and aluminum profile frames; contact technique; and solar cell modules measuring technique are described. Field tests at several places were conducted on the solar generator, electric current behavior, battery station, electric installation, power conditioner, solar measuring system with magnetic bubble memory technique, data transmission via telephone modems, and data processing system. The very favorable response to the PV-compact system proves the commercial possibilities of photovoltaic integration in architecture.

  7. Electrochemical desalination of historic Portuguese tiles

    DEFF Research Database (Denmark)

    Ottosen, Lisbeth M.; Dias-Ferreira, Celia; Ribeiro, Alexandra B.

    2015-01-01

    Soluble salts cause severe decay of historic Portuguese tiles. Treatment options for removal of the salts to stop the decay are few. The present paper deals with development of a method for electrochemical desalination, where an electric DC field is applied to the tiles. Laboratory experiments were...... the electrochemical treatment. The removal rate was similar for the two anions so the chloride concentration reached the lowest concentration level first. At this point the electric resistance increased, but the removal of nitrate continued unaffected till similar low concentration. The sulfate concentration...... was successful. Based on the obtained results an important step is taken towards development of an electrochemical technique for desalination of tile panels....

  8. Upgrading the Atlas Tile Calorimeter Electronics

    CERN Document Server

    Popeneciu, G; The ATLAS collaboration

    2014-01-01

    Tile Calorimeter is the central hadronic calorimeter of the ATLAS experiment at LHC. Around 2024, after the upgrade of the LHC the peak luminosity will increase by a factor of 5 compared to the design value, thus requiring an upgrade of the Tile Calorimeter readout electronics. Except the photomultipliers tubes (PMTs), most of the on- and off-detector electronics will be replaced, with the aim of digitizing all PMT pulses at the front-end level and sending them with 10 Gb/s optical links to the back-end electronics. One demonstrator prototype module is planned to be inserted in Tile Calorimeter in 2015 that will include hybrid electronic components able to probe the new design.

  9. Characterization of Bovine Serum Albumin Blocking Efficiency on Epoxy-Functionalized Substrates for Microarray Applications.

    Science.gov (United States)

    Sun, Yung-Shin; Zhu, Xiangdong

    2016-10-01

    Microarrays provide a platform for high-throughput characterization of biomolecular interactions. To increase the sensitivity and specificity of microarrays, surface blocking is required to minimize the nonspecific interactions between analytes and unprinted yet functionalized surfaces. To block amine- or epoxy-functionalized substrates, bovine serum albumin (BSA) is one of the most commonly used blocking reagents because it is cheap and easy to use. Based on standard protocols from microarray manufactories, a BSA concentration of 1% (10 mg/mL or 200 μM) and reaction time of at least 30 min are required to efficiently block epoxy-coated slides. In this paper, we used both fluorescent and label-free methods to characterize the BSA blocking efficiency on epoxy-functionalized substrates. The blocking efficiency of BSA was characterized using a fluorescent scanner and a label-free oblique-incidence reflectivity difference (OI-RD) microscope. We found that (1) a BSA concentration of 0.05% (0.5 mg/mL or 10 μM) could give a blocking efficiency of 98%, and (2) the BSA blocking step took only about 5 min to be complete. Also, from real-time and in situ measurements, we were able to calculate the conformational properties (thickness, mass density, and number density) of BSA molecules deposited on the epoxy surface. © 2015 Society for Laboratory Automation and Screening.

  10. Integrative missing value estimation for microarray data.

    Science.gov (United States)

    Hu, Jianjun; Li, Haifeng; Waterman, Michael S; Zhou, Xianghong Jasmine

    2006-10-12

    Missing value estimation is an important preprocessing step in microarray analysis. Although several methods have been developed to solve this problem, their performance is unsatisfactory for datasets with high rates of missing data, high measurement noise, or limited numbers of samples. In fact, more than 80% of the time-series datasets in Stanford Microarray Database contain less than eight samples. We present the integrative Missing Value Estimation method (iMISS) by incorporating information from multiple reference microarray datasets to improve missing value estimation. For each gene with missing data, we derive a consistent neighbor-gene list by taking reference data sets into consideration. To determine whether the given reference data sets are sufficiently informative for integration, we use a submatrix imputation approach. Our experiments showed that iMISS can significantly and consistently improve the accuracy of the state-of-the-art Local Least Square (LLS) imputation algorithm by up to 15% improvement in our benchmark tests. We demonstrated that the order-statistics-based integrative imputation algorithms can achieve significant improvements over the state-of-the-art missing value estimation approaches such as LLS and is especially good for imputing microarray datasets with a limited number of samples, high rates of missing data, or very noisy measurements. With the rapid accumulation of microarray datasets, the performance of our approach can be further improved by incorporating larger and more appropriate reference datasets.

  11. Evaluating the microbial diversity of an in vitro model of the human large intestine by phylogenetic microarray analysis

    NARCIS (Netherlands)

    Rajilic-Stojanovic, M.; Maathuis, A.; Heilig, G.H.J.; Venema, K.; Vos, de W.M.; Smidt, H.

    2010-01-01

    A high-density phylogenetic microarray targeting small subunit rRNA (SSU rRNA) sequences of over 1000 microbial phylotypes of the human gastrointestinal tract, the HITChip, was used to assess the impact of faecal inoculum preparation and operation conditions on an in vitro model of the human large

  12. Screening small-molecule compound microarrays for protein ligands without fluorescence labeling with a high-throughput scanning microscope.

    Science.gov (United States)

    Fei, Yiyan; Landry, James P; Sun, Yungshin; Zhu, Xiangdong; Wang, Xiaobing; Luo, Juntao; Wu, Chun-Yi; Lam, Kit S

    2010-01-01

    We describe a high-throughput scanning optical microscope for detecting small-molecule compound microarrays on functionalized glass slides. It is based on measurements of oblique-incidence reflectivity difference and employs a combination of a y-scan galvometer mirror and an x-scan translation stage with an effective field of view of 2 cm x 4 cm. Such a field of view can accommodate a printed small-molecule compound microarray with as many as 10,000 to 20,000 targets. The scanning microscope is capable of measuring kinetics as well as endpoints of protein-ligand reactions simultaneously. We present the experimental results on solution-phase protein reactions with small-molecule compound microarrays synthesized from one-bead, one-compound combinatorial chemistry and immobilized on a streptavidin-functionalized glass slide.

  13. A new read-out architecture for the ATLAS Tile Calorimeter Phase-II Upgrade

    CERN Document Server

    Valero, Alberto; The ATLAS collaboration

    2015-01-01

    TileCal is the Tile hadronic calorimeter of the ATLAS experiment at the LHC. The LHC has planned a series of upgrades culminating in the High Luminosity LHC (HL-LHC) which will increase of order five times the LHC nominal instantaneous luminosity. TileCal will undergo an upgrade to accommodate to the HL-LHC parameters. The TileCal read-out electronics will be redesigned introducing a new read-out strategy. The data generated in the detector will be transferred to the new Read-Out Drivers (sRODs) located in off-detector for every bunch crossing before any event selection is applied. Furthermore, the sROD will be responsible of providing preprocessed trigger information to the ATLAS first level of trigger. It will implement pipeline memories to cope with the latencies and rates specified in the new trigger schema and in overall it will represent the interface between the data acquisition, trigger and control systems and the on-detector electronics. The new TileCal read-out architecture will be presented includi...

  14. The upgrade of the laser calibration system for the ATLAS hadron calorimeter TileCal

    CERN Document Server

    Spalla, Margherita; The ATLAS collaboration

    2014-01-01

    The Tile Calorimeter (TileCal), the central section of the hadronic calorimeter of the ATLAS experiment, is a key detector component to detect hadrons, jets and taus and to measure the missing transverse energy. TileCal is built of steel and scintillating tiles coupled to optical fibers and read‐out by photomultipliers (PMT). The performance of TileCal relies on a continuous, high resolution calibration of the individual response of the 10,000 channels forming the detector. The calibration is based on a three level architecture: a charge injection system used to monitor the full electronics chain including front-end amplifiers, digitizers and event builder blocks for each individual channel; a distributed optical system using laser pulses to excite all PMTs; and a mobile Cesium radiative source which is driven through the detector cell floating inside a pipe system. This architecture allows for a cascade calibration of the electronics, of the PMT and electronics, and of full chain including the active detec...

  15. The optical instrumentation of the ATLAS Tile Calorimeter

    Energy Technology Data Exchange (ETDEWEB)

    Abdallah, J [IFIC, Centro Mixto Universidad de Valencia-CSIC, E46100 Burjassot, Valencia (Spain); Adragna, P; Bosi, F [Pisa University and INFN, Pisa (Italy); Alexa, C; Boldea, V [National Institute of Physics and Nuclear Engineering, Bucharest (Romania); Alves, R [LIP and FCTUC Univ. of Coimbra (Portugal); Amaral, P; Andresen, X [CERN, Geneva (Switzerland); Ananiev, A [LIP and IDMEC-IST, Lisbon (Portugal); Anderson, K [University of Chicago, Chicago, Illinois 60637 (United States); Antonaki, A [University of Athens, Athens (Greece); Batusov, V [JINR, Dubna (Russian Federation); Bednar, P [Comenius University, Bratislava (Slovakia); Bergeaas, E; Bohm, C [Stockholm University, Stockholm (Sweden); Biscarat, C [LPC Clermont-Ferrand, Universite Blaise Pascal / CNRS-IN2P3, Clermont-Ferrand (France); Blanch, O; Blanchot, G; Bosman, M [Institut de Fisica d' Altes Energies, Universitat Autonoma de Barcelona, Barcelona (Spain); Bromberg, C [Michigan State University, East Lansing, Michigan 48824 (United States); others, and

    2013-01-15

    The Tile Calorimeter, covering the central region of the ATLAS experiment up to pseudorapidities of {+-}1.7, is a sampling device built with scintillating tiles that alternate with iron plates. The light is collected in wave-length shifting (WLS) fibers and is read out with photomultipliers. In the characteristic geometry of this calorimeter the tiles lie in planes perpendicular to the beams, resulting in a very simple and modular mechanical and optical layout. This paper focuses on the procedures applied in the optical instrumentation of the calorimeter, which involved the assembly of about 460,000 scintillator tiles and 550,000 WLS fibers. The outcome is a hadronic calorimeter that meets the ATLAS performance requirements, as shown in this paper.

  16. A high-density Diversity Arrays Technology (DArT microarray for genome-wide genotyping in Eucalyptus

    Directory of Open Access Journals (Sweden)

    Myburg Alexander A

    2010-06-01

    Full Text Available Abstract Background A number of molecular marker technologies have allowed important advances in the understanding of the genetics and evolution of Eucalyptus, a genus that includes over 700 species, some of which are used worldwide in plantation forestry. Nevertheless, the average marker density achieved with current technologies remains at the level of a few hundred markers per population. Furthermore, the transferability of markers produced with most existing technology across species and pedigrees is usually very limited. High throughput, combined with wide genome coverage and high transferability are necessary to increase the resolution, speed and utility of molecular marker technology in eucalypts. We report the development of a high-density DArT genome profiling resource and demonstrate its potential for genome-wide diversity analysis and linkage mapping in several species of Eucalyptus. Findings After testing several genome complexity reduction methods we identified the PstI/TaqI method as the most effective for Eucalyptus and developed 18 genomic libraries from PstI/TaqI representations of 64 different Eucalyptus species. A total of 23,808 cloned DNA fragments were screened and 13,300 (56% were found to be polymorphic among 284 individuals. After a redundancy analysis, 6,528 markers were selected for the operational array and these were supplemented with 1,152 additional clones taken from a library made from the E. grandis tree whose genome has been sequenced. Performance validation for diversity studies revealed 4,752 polymorphic markers among 174 individuals. Additionally, 5,013 markers showed segregation when screened using six inter-specific mapping pedigrees, with an average of 2,211 polymorphic markers per pedigree and a minimum of 859 polymorphic markers that were shared between any two pedigrees. Conclusions This operational DArT array will deliver 1,000-2,000 polymorphic markers for linkage mapping in most eucalypt pedigrees

  17. Strategies for comparing gene expression profiles from different microarray platforms: application to a case-control experiment.

    Science.gov (United States)

    Severgnini, Marco; Bicciato, Silvio; Mangano, Eleonora; Scarlatti, Francesca; Mezzelani, Alessandra; Mattioli, Michela; Ghidoni, Riccardo; Peano, Clelia; Bonnal, Raoul; Viti, Federica; Milanesi, Luciano; De Bellis, Gianluca; Battaglia, Cristina

    2006-06-01

    Meta-analysis of microarray data is increasingly important, considering both the availability of multiple platforms using disparate technologies and the accumulation in public repositories of data sets from different laboratories. We addressed the issue of comparing gene expression profiles from two microarray platforms by devising a standardized investigative strategy. We tested this procedure by studying MDA-MB-231 cells, which undergo apoptosis on treatment with resveratrol. Gene expression profiles were obtained using high-density, short-oligonucleotide, single-color microarray platforms: GeneChip (Affymetrix) and CodeLink (Amersham). Interplatform analyses were carried out on 8414 common transcripts represented on both platforms, as identified by LocusLink ID, representing 70.8% and 88.6% of annotated GeneChip and CodeLink features, respectively. We identified 105 differentially expressed genes (DEGs) on CodeLink and 42 DEGs on GeneChip. Among them, only 9 DEGs were commonly identified by both platforms. Multiple analyses (BLAST alignment of probes with target sequences, gene ontology, literature mining, and quantitative real-time PCR) permitted us to investigate the factors contributing to the generation of platform-dependent results in single-color microarray experiments. An effective approach to cross-platform comparison involves microarrays of similar technologies, samples prepared by identical methods, and a standardized battery of bioinformatic and statistical analyses.

  18. Some comments on pinwheel tilings and their diffraction

    Energy Technology Data Exchange (ETDEWEB)

    Grimm, Uwe [Department of Mathematics and Statistics, Open University, Walton Hall, Milton Keynes MK7 6AA (United Kingdom); Deng Xinghua, E-mail: u.g.grimm@open.ac.uk [University of Waterloo, 200 University Avenue West, Waterloo, Ontario, N2L 3G1 (Canada)

    2011-03-01

    The pinwheel tiling is the paradigm for a substitution tiling with circular symmetry, in the sense that the corresponding autocorrelation is circularly symmetric. As a consequence, its diffraction measure is also circularly symmetric, so the pinwheel diffraction consists of sharp rings and, possibly, a continuous component with circular symmetry. We consider some combinatorial properties of the tiles and their orientations, and a numerical approach to the diffraction of weighted pinwheel point sets.

  19. Modular Interactive Tiles for Rehabilitation – Evidence and Effect

    DEFF Research Database (Denmark)

    Lund, Henrik Hautop

    2010-01-01

    years) in daily use in a hospital rehabilitation unit e.g. for cardiac patients. Also, the tiles were tested for performing physical rehabilitation of stroke patients both in hospital, rehabilitation centre and in their private home. In all test cases qualitative feedback indicate that the patients find......We developed modular interactive tiles to be used for playful physiotherapy, which is supposed to motivate patients to engage in and perform physical rehabilitation exercises. We report on evidence for elderly training. We tested the modular interactive tiles for an extensive period of time (4...... the playful use of modular interactive tiles engaging and motivating for them to perform the rehabilitation. Also, test data suggest that some playful exercises on the tiles demand an average heart rate of 75% and 86% of the maximum heart rate....

  20. Status of the ATLAS hadronic tile calorimeter

    International Nuclear Information System (INIS)

    Leitner, R.

    2005-01-01

    Short status of the Tile Calorimeter project is given. Major achievements in the mechanical construction of the detector modules, their instrumentation, cylinders assembly, as well as the principles of the detector front-end electronics, are described. The ideas of Tile Calorimeter module calibration are presented

  1. Construction of 2D quasi-periodic Rauzy tiling by similarity transformation

    International Nuclear Information System (INIS)

    Zhuravlev, V. G.; Maleev, A. V.

    2009-01-01

    A new approach to constructing self-similar fractal tilings is proposed based on the construction of semigroups generated by a finite set of similarity transformations. The Rauzy tiling-a 2D analog of 1D Fibonacci tiling generated by the golden mean-is used as an example to illustrate this approach. It is shown that the Rauzy torus development and the elementary fractal boundary of Rauzy tiling can be constructed in the form of a set of centers of similarity semigroups generated by two and three similarity transformations, respectively. A centrosymmetric tiling, locally dual to the Rauzy tiling, is constructed for the first time and its parameterization is developed.

  2. The optical instrumentation of the ATLAS Tile Calorimeter

    International Nuclear Information System (INIS)

    Abdallah, J; Adragna, P; Bosi, F; Alexa, C; Boldea, V; Alves, R; Amaral, P; Andresen, X; Ananiev, A; Anderson, K; Antonaki, A; Batusov, V; Bednar, P; Bergeaas, E; Bohm, C; Biscarat, C; Blanch, O; Blanchot, G; Bosman, M; Bromberg, C

    2013-01-01

    The Tile Calorimeter, covering the central region of the ATLAS experiment up to pseudorapidities of ±1.7, is a sampling device built with scintillating tiles that alternate with iron plates. The light is collected in wave-length shifting (WLS) fibers and is read out with photomultipliers. In the characteristic geometry of this calorimeter the tiles lie in planes perpendicular to the beams, resulting in a very simple and modular mechanical and optical layout. This paper focuses on the procedures applied in the optical instrumentation of the calorimeter, which involved the assembly of about 460,000 scintillator tiles and 550,000 WLS fibers. The outcome is a hadronic calorimeter that meets the ATLAS performance requirements, as shown in this paper.

  3. Hydrogen isotopes retention in divertor tiles of DIII-D tokamak

    International Nuclear Information System (INIS)

    Skorodumov, B.G.; Buzhinskij, O.I.; West, W.P.; Ulanov, V.G.

    1996-01-01

    The absolute concentration of hydrogen isotopes in graphite divertor tiles coated with boron carbide after the exposure in DIII-D during 16 operational weeks of the 1993 campaign was obtained using the 14 MeV neutron-induced recoil detection (NERD) method. It is shown that the absolute concentration of H in tile's surface layers correlates with thickness of the deposited layers. The graphite tile without boron carbide coating had a H concentration similar to that of the tile with the thickest deposited layer. Deuterium and tritium were not detected in any of the investigated tiles. The proposed method can be used for the determination of the thickness of coatings without sample destruction. Thus, the thickness of boron carbide coatings on the tiles obtained with this method varied from 80 to 115 μm, which corresponded well to electron microscope data. (orig.)

  4. Characterization and optimization of Silicon Photomultipliers and small size scintillator tiles for future calorimeter applications

    CERN Document Server

    AUTHOR|(CDS)2095312; Horváth, Ákos

    For the active layers of highly granular sampling calorimeters, small scintillator tiles read out by Silicon Photomultipliers (SiPM) can be an interesting and cost effective alternative to silicon sensors. At CERN a test setup was realized for the development of new generations of calorimeters to characterize new types of Silicon Photomultipliers in terms of gain, noise, afterpulses and crosstalk and to study the impact of scintillator wrappings and the tile size on the measured light yield and uniformity. In this thesis work, the experimental setup is described and the steps for commissioning the equipment are discussed. Then, the temperature dependence of the Silicon Photomultiplier response will be investigated, including the dependence of bare Silicon Photomultipliers as well as Silicon Photomultipliers coupled to scintillator tiles. Finally, the tile-photomultiplier response for different tile sizes and coating options will be evaluated. The experimental setup will be extended to allow for the characteri...

  5. High-Throughput Quantification of SH2 Domain-Phosphopeptide Interactions with Cellulose-Peptide Conjugate Microarrays.

    Science.gov (United States)

    Engelmann, Brett W

    2017-01-01

    The Src Homology 2 (SH2) domain family primarily recognizes phosphorylated tyrosine (pY) containing peptide motifs. The relative affinity preferences among competing SH2 domains for phosphopeptide ligands define "specificity space," and underpins many functional pY mediated interactions within signaling networks. The degree of promiscuity exhibited and the dynamic range of affinities supported by individual domains or phosphopeptides is best resolved by a carefully executed and controlled quantitative high-throughput experiment. Here, I describe the fabrication and application of a cellulose-peptide conjugate microarray (CPCMA) platform to the quantitative analysis of SH2 domain specificity space. Included herein are instructions for optimal experimental design with special attention paid to common sources of systematic error, phosphopeptide SPOT synthesis, microarray fabrication, analyte titrations, data capture, and analysis.

  6. Weight change measurements of erosion/deposition at beryllium limiter tiles in ISX-B

    International Nuclear Information System (INIS)

    Roberto, J.B.; Edmonds, P.H.; England, A.C.; Gabbard, A.; Zuhr, R.A.

    1985-07-01

    The weight changes of Be tiles which functioned as a rail limiter in ISX-B for more than 3500 beam-heated discharges have been determined. The net weight loss for the limiter was 2.0 g, with the central tiles losing a total of 3.2 g and inboard tiles gaining 1.2 g. The weight loss is attributed primarily to the release of Be droplets as a result of limiter surface melting. The weight gains resulted from an inward flow of molten material along the limiter surface. The results indicate high erosion (melt loss) with incomplete and nonuniform redeposition (melt flow) of limiter material during periods of limiter melting

  7. ATLAS Tile calorimeter calibration and monitoring systems

    CERN Document Server

    Marjanovic, Marija; The ATLAS collaboration

    2018-01-01

    The ATLAS Tile Calorimeter (TileCal) is the central section of the hadronic calorimeter of the ATLAS experiment. This sampling calorimeter uses steel plates as absorber and scintillating tiles as active medium. The light produced by the passage of charged particles is transmitted by wavelength shifting fibers to photo-multiplier tubes (PMTs), located in the outer part of the calorimeter. The readout is segmented into about 5000 cells, each one being read out by two PMTs in parallel. To calibrate and monitor the stability and performance of the full readout chain during the data taking, a set of calibration sub-systems is used. The TileCal calibration system comprises Cesium radioactive sources, laser, charge injection elements, and an integrator based readout system. Combined information from all systems allows to monitor and to equalize the calorimeter response at each stage of the signal evolution, from scintillation light to digitization. Calibration runs are monitored from a data quality perspective and u...

  8. ATLAS Tile calorimeter calibration and monitoring systems

    CERN Document Server

    Boumediene, Djamel Eddine; The ATLAS collaboration

    2017-01-01

    The ATLAS Tile Calorimeter (TileCal) is the central section of the hadronic calorimeter of the ATLAS experiment and provides important information for reconstruction of hadrons, jets, hadronic decays of tau leptons and missing transverse energy. This sampling calorimeter uses steel plates as absorber and scintillating tiles as active medium. The light produced by the passage of charged particles is transmitted by wavelength shifting fibres to photomultiplier tubes (PMTs). PMT signals are then digitized at 40 MHz and stored on detector and are only transferred off detector once the first level trigger acceptance has been confirmed. The readout is segmented into about 5000 cells (longitudinally and transversally), each of them being read out by two PMTs in parallel. To calibrate and monitor the stability and performance of each part of the readout chain, a set of calibration systems is used. The TileCal calibration system comprises Cesium radioactive sources, laser, charge injection elements and an integrator b...

  9. ATLAS Tile calorimeter calibration and monitoring systems

    CERN Document Server

    AUTHOR|(INSPIRE)INSPIRE-00445232; The ATLAS collaboration

    2016-01-01

    The ATLAS Tile Calorimeter (TileCal) is the central section of the hadronic calorimeter of the ATLAS experiment and provides important information for reconstruction of hadrons, jets, hadronic decays of tau leptons and missing transverse energy. This sampling calorimeter uses steel plates as absorber and scintillating tiles as active medium. The light produced by the passage of charged particles is transmitted by wavelength shifting fibres to photomultiplier tubes (PMTs), located on the outside of the calorimeter. The readout is segmented into about 5000 cells (longitudinally and transversally), each of them being read out by two PMTs in parallel. To calibrate and monitor the stability and performance of each part of the readout chain during the data taking, a set of calibration systems is used. The TileCal calibration system comprises Cesium radioactive sources, laser and charge injection elements and it allows to monitor and equalize the calorimeter response at each stage of the signal production, from scin...

  10. ATLAS Tile calorimeter calibration and monitoring systems

    CERN Document Server

    AUTHOR|(INSPIRE)INSPIRE-00445232; The ATLAS collaboration

    2017-01-01

    The ATLAS Tile Calorimeter (TileCal) is the central section of the hadronic calorimeter of the ATLAS experiment and provides important information for reconstruction of hadrons, jets, hadronic decays of tau leptons and missing transverse energy. This sampling calorimeter uses steel plates as absorber and scintillating tiles as active medium. The light produced by the passage of charged particles is transmitted by wavelength shifting fibres to photomultiplier tubes (PMTs), located on the outside of the calorimeter. The readout is segmented into about 5000 cells (longitudinally and transversally), each of them being read out by two PMTs in parallel. To calibrate and monitor the stability and performance of each part of the readout chain during the data taking, a set of calibration systems is used. The TileCal calibration system comprises cesium radioactive sources, Laser and charge injection elements, and allows for monitoring and equalization of the calorimeter response at each stage of the signal production, ...

  11. Screening small-molecule compound microarrays for protein ligands without fluorescence labeling with a high-throughput scanning microscope

    OpenAIRE

    Fei, Yiyan; Landry, James P.; Sun, Yungshin; Zhu, Xiangdong; Wang, Xiaobing; Luo, Juntao; Wu, Chun-Yi; Lam, Kit S.

    2010-01-01

    We describe a high-throughput scanning optical microscope for detecting small-molecule compound microarrays on functionalized glass slides. It is based on measurements of oblique-incidence reflectivity difference and employs a combination of a y-scan galvometer mirror and an x-scan translation stage with an effective field of view of 2 cm×4 cm. Such a field of view can accommodate a printed small-molecule compound microarray with as many as 10,000 to 20,000 targets. The scanning microscope is...

  12. Integrative missing value estimation for microarray data

    Directory of Open Access Journals (Sweden)

    Zhou Xianghong

    2006-10-01

    Full Text Available Abstract Background Missing value estimation is an important preprocessing step in microarray analysis. Although several methods have been developed to solve this problem, their performance is unsatisfactory for datasets with high rates of missing data, high measurement noise, or limited numbers of samples. In fact, more than 80% of the time-series datasets in Stanford Microarray Database contain less than eight samples. Results We present the integrative Missing Value Estimation method (iMISS by incorporating information from multiple reference microarray datasets to improve missing value estimation. For each gene with missing data, we derive a consistent neighbor-gene list by taking reference data sets into consideration. To determine whether the given reference data sets are sufficiently informative for integration, we use a submatrix imputation approach. Our experiments showed that iMISS can significantly and consistently improve the accuracy of the state-of-the-art Local Least Square (LLS imputation algorithm by up to 15% improvement in our benchmark tests. Conclusion We demonstrated that the order-statistics-based integrative imputation algorithms can achieve significant improvements over the state-of-the-art missing value estimation approaches such as LLS and is especially good for imputing microarray datasets with a limited number of samples, high rates of missing data, or very noisy measurements. With the rapid accumulation of microarray datasets, the performance of our approach can be further improved by incorporating larger and more appropriate reference datasets.

  13. 40 CFR 427.70 - Applicability; description of the asbestos floor tile subcategory.

    Science.gov (United States)

    2010-07-01

    ... asbestos floor tile subcategory. 427.70 Section 427.70 Protection of Environment ENVIRONMENTAL PROTECTION... Asbestos Floor Tile Subcategory § 427.70 Applicability; description of the asbestos floor tile subcategory... manufacture of asbestos floor tile. ...

  14. Prevalence of Cardiovascular Risk Factors among Tile and Ceramic Workers in Yazd, Iran.

    Science.gov (United States)

    Mehrparvar, Amir Houshang; Mirmohammadi, Seyyed Jalil; Mostaghaci, Mehrdad; Bahaloo, Maryam; Heydari, Mohammad; Samimi, Ehsan; Zohal, Mahnaz; Davari, Mohammad Hossein

    2013-01-01

    Introduction. Cardiovascular disorders (CVDs) are among the most important diseases in the world and determination of their risk factors is essential for primary and secondary prevention. This study aimed to evaluate these risk factors in workers of tile and ceramic industry, a main industry in Yazd. Materials and Methods. In a cross-sectional study, 1075 tile and ceramic workers were selected by simple sampling method. BMI, blood pressure, FBS, and lipid profile were measured and compared to international standards. Results. 731 individuals (68%) had at least one risk factor, and 52%, 12%, 3%, and 0.7% had one, two, three, and four risk factors, respectively. The most common risk factor was abnormal BMI (49.6%); low HDL (48.4%) and high TG (14.1%) were in the second and third orders. Conclusion. This study showed a relatively high prevalence for CVD risk factors among tile and ceramic workers. Low HDL, high TG, and overweight were the most frequent risk factors in this population.

  15. Spatial chaos of Wang tiles with two symbols

    Science.gov (United States)

    Chen, Jin-Yu; Chen, Yu-Jie; Hu, Wen-Guei; Lin, Song-Sun

    2016-02-01

    This investigation completely classifies the spatial chaos problem in plane edge coloring (Wang tiles) with two symbols. For a set of Wang tiles B , spatial chaos occurs when the spatial entropy h ( B ) is positive. B is called a minimal cycle generator if P ( B ) ≠ 0̸ and P ( B ' ) = 0̸ whenever B ' ⫋ B , where P ( B ) is the set of all periodic patterns on ℤ2 generated by B . Given a set of Wang tiles B , write B = C 1 ∪ C 2 ∪ ⋯ ∪ C k ∪ N , where Cj, 1 ≤ j ≤ k, are minimal cycle generators and B contains no minimal cycle generator except those contained in C1∪C2∪⋯∪Ck. Then, the positivity of spatial entropy h ( B ) is completely determined by C1∪C2∪⋯∪Ck. Furthermore, there are 39 equivalence classes of marginal positive-entropy sets of Wang tiles and 18 equivalence classes of saturated zero-entropy sets of Wang tiles. For a set of Wang tiles B , h ( B ) is positive if and only if B contains a MPE set, and h ( B ) is zero if and only if B is a subset of a SZE set.

  16. Bio deterioration behaviour in different colour roofing tiles (red and straw coloured)

    International Nuclear Information System (INIS)

    Guzulla, M. F.; Sanchez, E.; Gonzalez, J. M.; Orduna, M.

    2014-01-01

    Bio colonization of building materials is a critical problem for the durability of constructions. Industrial experience shows that straw coloured roofing tiles are more prone to colonization than red roofing tiles, even having similar characteristics. The aim of this work is to explain the difference of bio colonization between different colour roofing tiles. The chemical composition of the surface of straw coloured and red roofing tiles, the phase composition and the microstructure of the roofing tiles were determined by WD-XRF, XRD and SEM-EDX, respectively. The pore size distribution was carried out by Hg porosimetry. The solubility was studied by determining the soluble salts (Ca, Mg, Na, K, Cl and SO 4 2-) by ICP-OES and ionic chromatography. Roofing tile bio receptivity was evaluated by determining fluorescence intensity using a pulse amplitude- modulated (PAM) fluoro meter, and cyanobacteria Oscillator sp. The results obtained show higher concentration of calcium and sulphur in straw coloured roofing tiles surface, and higher solubility than red roofing tiles. Moreover, according to the results obtained in bio receptivity assays, straw coloured roofing tiles are more prone to colonization than red roofing tiles, so, there is a relationship between surface properties of roofing tiles and bio colonization, as it is observed in industrial products. (Author)

  17. Analysis and Design of the Beryllium Tiles for the JET ILW Project

    International Nuclear Information System (INIS)

    Thompson, V.; Krivchenkov, Y.; Riccardo, V.; Vizvary, Z.

    2006-01-01

    Work is in progress to completely replace, in 2008, the JET existing CFC tiles with a configuration of plasma facing materials consistent with the ITER design. The ITER-like Wall (ILW) will be created with a combination of beryllium (Be), tungsten (W), W-Coated CFC and Be-Coated inconel tiles, with the material depending on the local anticipated heat flux and geometry required. Over 2000 tiles will be replaced and the ILW will accommodate additional heating up to at least 50 MW for 10 s. This paper describes the generic problems associated with Be tiles (power handling capacity and disruption induced eddy currents) and illustrates specific design cases. As with the existing first wall components, the Be tiles will be inertially cooled and the Be melting temperature of only 1289 o C will drive their power handling performance. At 40 mm typical thickness, the tiles are '' thermally thick '' for typical 10 s. shots and will handle about 60 MJ/m 2 without melting. Surface castellations and kinematic restraints minimise thermally induced stresses. As the thermal flux arrives along near toroidal directions, the design keeps the exposed depth of poloidally running edges to low levels: down to 40 microns in the most severe positions. This limit strongly constrains the dimensions of the castellation grooves and the placing of the cuts described below. During disruptions, Be tiles are subjected to eddy current torques due to the combination of large changes in magnetic field (typically 100 T/s), high magnetic fields (B(tor) ∼ 4 T in the centre of the plasma) and the low resistivity of Be (8 E-8 Ohm-m at 200 o C, the minimum operating temperature of JET). The ILW Be tiles will manage these torques via a combination of the castellations, along with cuts which will interrupt the eddy current loops. The cuts result in the division of the tiles into several slices which require inconel carrier '' toast racks '' for support. Example cases will show FEA results of eddy current

  18. Fiber-tile optical studies at Argonne

    International Nuclear Information System (INIS)

    Underwood, D.G.; Morgan, D.J.; Proudfoot, J.

    1991-01-01

    In support of a fiber-tile calorimeter for SDC, we have done studies on a number of topics. The most basic problems were light output and uniformity of response. Using a small electron beam, we have studied fiber placement, tile preparation, wrapping and masking, fiber splicing, fiber routing, phototube response, and some degradation factors. We found two configurations which produced more light output than the others and reasonably uniform response. We have chosen one of these to go into production for the EM test module on the basis of fiber routing for ease of assembly of the calorimeter. We have also applied some of the tools we developed to CDF end plug tile uniformity, shower max testing and development for a couple of detectors, and development of better techniques for radiation damage studies. 18 figs

  19. Remotely replaceable Tokamak plasma limiter tiles

    International Nuclear Information System (INIS)

    Remy, G.

    1989-01-01

    U-shaped limiter tiles placed end-to-end over a pair of parallel runners secured to a wall have two rods which engage L-shaped slots in the runners. The short receiving legs of the L-shaped slots are perpendicular to the wall and open away from the wall, while long retaining legs are parallel to and adjacent the wall. A sliding bar between the runners has grooves with clips to retain the rods pressed into receiving legs of the L-shaped slots in the runners. Sliding the bar in the direction of retaining legs of the L-shaped slots latches the tiles in place over the runners. Resilient contact strips between the parallel arms of the U-shaped tiles and the wall assure thermal and electrical contact with the wall

  20. Tuning iteration space slicing based tiled multi-core code implementing Nussinov's RNA folding.

    Science.gov (United States)

    Palkowski, Marek; Bielecki, Wlodzimierz

    2018-01-15

    RNA folding is an ongoing compute-intensive task of bioinformatics. Parallelization and improving code locality for this kind of algorithms is one of the most relevant areas in computational biology. Fortunately, RNA secondary structure approaches, such as Nussinov's recurrence, involve mathematical operations over affine control loops whose iteration space can be represented by the polyhedral model. This allows us to apply powerful polyhedral compilation techniques based on the transitive closure of dependence graphs to generate parallel tiled code implementing Nussinov's RNA folding. Such techniques are within the iteration space slicing framework - the transitive dependences are applied to the statement instances of interest to produce valid tiles. The main problem at generating parallel tiled code is defining a proper tile size and tile dimension which impact parallelism degree and code locality. To choose the best tile size and tile dimension, we first construct parallel parametric tiled code (parameters are variables defining tile size). With this purpose, we first generate two nonparametric tiled codes with different fixed tile sizes but with the same code structure and then derive a general affine model, which describes all integer factors available in expressions of those codes. Using this model and known integer factors present in the mentioned expressions (they define the left-hand side of the model), we find unknown integers in this model for each integer factor available in the same fixed tiled code position and replace in this code expressions, including integer factors, with those including parameters. Then we use this parallel parametric tiled code to implement the well-known tile size selection (TSS) technique, which allows us to discover in a given search space the best tile size and tile dimension maximizing target code performance. For a given search space, the presented approach allows us to choose the best tile size and tile dimension in

  1. High-sensitivity HLA typing by Saturated Tiling Capture Sequencing (STC-Seq).

    Science.gov (United States)

    Jiao, Yang; Li, Ran; Wu, Chao; Ding, Yibin; Liu, Yanning; Jia, Danmei; Wang, Lifeng; Xu, Xiang; Zhu, Jing; Zheng, Min; Jia, Junling

    2018-01-15

    Highly polymorphic human leukocyte antigen (HLA) genes are responsible for fine-tuning the adaptive immune system. High-resolution HLA typing is important for the treatment of autoimmune and infectious diseases. Additionally, it is routinely performed for identifying matched donors in transplantation medicine. Although many HLA typing approaches have been developed, the complexity, low-efficiency and high-cost of current HLA-typing assays limit their application in population-based high-throughput HLA typing for donors, which is required for creating large-scale databases for transplantation and precision medicine. Here, we present a cost-efficient Saturated Tiling Capture Sequencing (STC-Seq) approach to capturing 14 HLA class I and II genes. The highly efficient capture (an approximately 23,000-fold enrichment) of these genes allows for simplified allele calling. Tests on five genes (HLA-A/B/C/DRB1/DQB1) from 31 human samples and 351 datasets using STC-Seq showed results that were 98% consistent with the known two sets of digitals (field1 and field2) genotypes. Additionally, STC can capture genomic DNA fragments longer than 3 kb from HLA loci, making the library compatible with the third-generation sequencing. STC-Seq is a highly accurate and cost-efficient method for HLA typing which can be used to facilitate the establishment of population-based HLA databases for the precision and transplantation medicine.

  2. In-situ change and repairing method of armour tile made of carbon fiber composite material in divertor

    International Nuclear Information System (INIS)

    Ishiyama, Shintaro.

    1994-01-01

    A joint portion of a damaged armour tile of a carbon fiber composite material and a divertor substrate is locally heated spontaneously to re-melt the soldering. Then, the damaged tile is removed and the portion where the tile is removed is heated again to melt the soldering, then a tile for exchange is joined. Alternatively, a thermosetting type adhesive is coated on the surface of the damaged armour tile made of carbon fiber composite material on the divertor, and a tile for repairing is adhered thereon then the joint surface is locally heated to cure the adhesive. For local heating, for example, high frequency heating or dielectric heating is used. It is preferably conducted by remote handling by using robot arms under vacuum in an vacuum vessel of the thermonuclear device. The operations of the heating and pressurization for the joint surface are preferably repeated for several times. (N.H.)

  3. Statistical Methods for Comparative Phenomics Using High-Throughput Phenotype Microarrays

    KAUST Repository

    Sturino, Joseph

    2010-01-24

    We propose statistical methods for comparing phenomics data generated by the Biolog Phenotype Microarray (PM) platform for high-throughput phenotyping. Instead of the routinely used visual inspection of data with no sound inferential basis, we develop two approaches. The first approach is based on quantifying the distance between mean or median curves from two treatments and then applying a permutation test; we also consider a permutation test applied to areas under mean curves. The second approach employs functional principal component analysis. Properties of the proposed methods are investigated on both simulated data and data sets from the PM platform.

  4. Thermal-stress analysis and testing of DIII-D armor tiles

    International Nuclear Information System (INIS)

    Baxi, C.B.; Anderson, P.M.; Reis, E.E.; Smith, J.P.; Smith, P.D.; Croesmann, C.; Watkins, J.; Whitley, J.

    1987-10-01

    It is planned to install about 1500 new armor tiles in the DIII-D tokamak. The armor tiles currently installed in DIII-D are made by brazing Poco AXF-5Q graphite onto Inconel X-750 stock. A small percentage of these have failed by breakage of graphite. These failures were believed to be related to significant residual stress remaining in graphite after brazing. Hence, an effort was undertaken to improve the design with all-graphite tiles. Three criteria must be satisfied by the armor tiles and the hardware used to attach the tiles to the vessel walls: tiles should not structurally fail, peak tile temperature must be less than 2500 K, and peak vessel stresses must be below acceptable levels. A number of alternate design concepts were first analyzed with the two-dimensional finite element codes TOPAZ2D and NIKE2D. Promising designs were optimized for best parameters such as thicknesses, etc. The two best designs were further analyzed for thermal stresses with the three-dimensional codes P/THERMAL and P/STRESS. Prototype tiles of a number of materials were fabricated by GA and tested at the Plasma Materials Test Facility of the Sandia National Laboratory at Albuquerque. The tests simulated the heat flux and cooling conditions in DIII-D. This paper describes the 2-D and 3-D thermal stress analyses, the test results and logic which led to the selected design of the DIII-D armor tiles. 5 refs., 7 figs., 3 tabs

  5. Real-time biscuit tile image segmentation method based on edge detection.

    Science.gov (United States)

    Matić, Tomislav; Aleksi, Ivan; Hocenski, Željko; Kraus, Dieter

    2018-05-01

    In this paper we propose a novel real-time Biscuit Tile Segmentation (BTS) method for images from ceramic tile production line. BTS method is based on signal change detection and contour tracing with a main goal of separating tile pixels from background in images captured on the production line. Usually, human operators are visually inspecting and classifying produced ceramic tiles. Computer vision and image processing techniques can automate visual inspection process if they fulfill real-time requirements. Important step in this process is a real-time tile pixels segmentation. BTS method is implemented for parallel execution on a GPU device to satisfy the real-time constraints of tile production line. BTS method outperforms 2D threshold-based methods, 1D edge detection methods and contour-based methods. Proposed BTS method is in use in the biscuit tile production line. Copyright © 2018 ISA. Published by Elsevier Ltd. All rights reserved.

  6. Characterization of double face adhesive sheets for ceramic tile installation; Caracterizacao de sistema de colagem dupla-face para assentamento de revestimento ceramico

    Energy Technology Data Exchange (ETDEWEB)

    Nascimento, Otavio L.; Mansur, Alexandra A.P.; Mansur, Herman S., E-mail: hmansur@demet.ufmg.br [Universidade Federal de Minas Gerais. UFMG, Departamento de Engenharia Metalurgica e de Materiais, Belo Horizonte, MG (Brazil)

    2011-07-01

    The main goal of this work was the characterization of an innovative ceramic tile installation product based on double face adhesive sheets. Density, hardness, tensile strength, x-ray diffraction, infrared spectroscopy, and scanning electron microscopy coupled with spectroscopy of dispersive energy assays were conducted. The results are in agreement with some manufacture specifications and the obtained information will be crucial in the analysis of durability and stability of the ceramic tile system installed with this new product. (author)

  7. Hardware Algorithms For Tile-Based Real-Time Rendering

    NARCIS (Netherlands)

    Crisu, D.

    2012-01-01

    In this dissertation, we present the GRAphics AcceLerator (GRAAL) framework for developing embedded tile-based rasterization hardware for mobile devices, meant to accelerate real-time 3-D graphics (OpenGL compliant) applications. The goal of the framework is a low-cost, low-power, high-performance

  8. Self Cleanable Tile Grout

    Directory of Open Access Journals (Sweden)

    Mehmet CANBAZ

    2016-03-01

    Full Text Available In this study, In this study, self-cleaning tile grout and white cement specimens are produced and the effect of self-cleaning mechanism of TiO2 is tested. Effects of TiO2 amount and TiO2 type are tested and compared. Anatase form and rutile TiO2 additive are used in the study. In addition, effects of silicate additives on the self-cleaning mechanism is determined. Studies are conducted with respect to Italian UNI code. This study presents a method for solving rust between the tiles of ceramic wet floor coverings with photocatalysis method and then removing the dirt with secondary effects such as water, wind etc.

  9. ATLAS TileCal Read Out Driver production

    International Nuclear Information System (INIS)

    Valero, A; Abdallah, J; Castillo, V; Cuenca, C; Ferrer, A; Fullana, E; Gonzalez, V; Higon, E; Poveda, J; Ruiz-MartInez, A; Saez, M A; Salvachua, B; SanchIs, E; Solans, C; Valls, J A

    2007-01-01

    The production tests of the 38 ATLAS TileCal Read Out Drivers (RODs) are presented in this paper. The hardware specifications and firmware functionality of the RODs modules, the test-bench and the test procedure to qualify the boards are described. Finally the performance results, the temperature studies and high rate tests are shown and discussed

  10. Utilisation of different types of coal fly ash in the production of ceramic tiles

    OpenAIRE

    KocKal, N. U.

    2012-01-01

    The influence of varying proportions of different types of fly ash (used in place of feldspar) and different sintering temperatures on the sintered properties of ceramic tile bodies was evaluated. The results indicated that sintering ceramic tiles with a high fly ash content at a high temperature caused a decrease in the properties because of bloating. The ceramic samples containing a higher amount of fly ash that were sintered at low temperature exhibited lower water absorption, larger shrin...

  11. Data acquisition and processing in the ATLAS tile calorimeter phase-II upgrade demonstrator

    CERN Document Server

    AUTHOR|(INSPIRE)INSPIRE-00306349; The ATLAS collaboration

    2017-01-01

    The LHC has planned a series of upgrades culminating in the High Luminosity LHC which will have an average luminosity 5-7 times larger than the nominal Run 2 value. The ATLAS Tile Calorimeter will undergo an upgrade to accommodate the HL-LHC parameters. The TileCal readout electronics will be redesigned, introducing a new readout strategy. A Demonstrator program has been developed to evaluate the new proposed readout architecture and prototypes of all the components. In the Demonstrator, the detector data received in the Tile PreProcessors (PPr) are stored in pipeline buffers and upon the reception of an external trigger signal the data events are processed, packed and readout in parallel through the legacy ROD system, the new Front-End Link eXchange system and an ethernet connection for monitoring purposes. This contribution describes in detail the data processing and the hardware, firmware and software components of the TileCal Demonstrator readout system.

  12. Healing assessment of tile sets for error tolerance in DNA self-assembly.

    Science.gov (United States)

    Hashempour, M; Mashreghian Arani, Z; Lombardi, F

    2008-12-01

    An assessment of the effectiveness of healing for error tolerance in DNA self-assembly tile sets for algorithmic/nano-manufacturing applications is presented. Initially, the conditions for correct binding of a tile to an existing aggregate are analysed using a Markovian approach; based on this analysis, it is proved that correct aggregation (as identified with a so-called ideal tile set) is not always met for the existing tile sets for nano-manufacturing. A metric for assessing tile sets for healing by utilising punctures is proposed. Tile sets are investigated and assessed with respect to features such as error (mismatched tile) movement, punctured area and bond types. Subsequently, it is shown that the proposed metric can comprehensively assess the healing effectiveness of a puncture type for a tile set and its capability to attain error tolerance for the desired pattern. Extensive simulation results are provided.

  13. Natural radioactivity and radon exhalation rates in man-made tiles used as building materials in Japan.

    Science.gov (United States)

    Iwaoka, K; Hosoda, M; Suwankot, N; Omori, Y; Ishikawa, T; Yonehara, H; Tokonami, S

    2015-11-01

    Man-made tiles frequently used in Japan were collected, and activity concentrations and radon ((222)Rn) exhalation rates in these tiles were measured. Dose estimations for inhabitants living in houses built using these tiles were also carried out. The activity concentrations of (226)Ra, (228)Ra and (40)K in the man-made tiles were 31-170, 35-110 and 260-980 Bq kg(-1), respectively. The (222)Rn exhalation rates in the tiles were 8.8-21 μBq m(-2) s(-1). The ranges of experimental activity concentrations and (222)Rn exhalation rates were almost identical to those of natural rocks used as typical building materials in Japan. The maximum value of effective dose to inhabitants living in houses built with the man-made tiles was 0.14 mSv y(-1), which is lower than the reference level range (1-20 mSv y(-1)) for abnormally high levels of natural background radiation published in the ICRP Publication 103. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

  14. SiC Armor Tiles via Magnetic Compaction and Pressureless Sintering

    National Research Council Canada - National Science Library

    Chelluri, Bhanu; Knoth, Ed A; Franks, L. P

    2008-01-01

    The purpose of the SBIR, entitled "Continuous Dynamic Processing of Ceramic Tiles for Ground Vehicle Protection", was to create a high rate, cost effective manufacturing method for producing silicon carbide (SiC...

  15. Development, installation, and initial operation of DIII-D graphite armor tiles

    International Nuclear Information System (INIS)

    Anderson, P.M.; Baxi, C.B.; Reis, E.E.; Smith, J.P.; Smith, P.D.

    1988-04-01

    An upgrade of the DIII-D vacuum vessel protection system has been completed. The ceiling, floor, and inner wall have been armored to enable operation of CIT-relevant doublenull diverted plasmas and to enable the use of the inner wall as a limiting surface. The all- graphite tiles replace the earlier partial coverage armor configuration which consisted of a combination of Inconel tiles and graphite brazed to Inconel tiles. A new all-graphite design concept was chosen for cost and reliability reasons. The 10 minute duration between plasma discharges required the tiles to be cooled by conduction to the water-cooled vessel wall. Using two and three- dimensional analyses, the tile design was optimized to minimize thermal stresses with uniform thermal loading on the plasma-facing surface. Minimizing the stresses around the tile hold-down feature and eliminating stress concentrators were emphasized in the design. The design of the tile fastener system resulted in sufficient hold-down forces for good thermal conductance to the vessel and for securing the tile against eddy current forces. The tiles are made of graphite, and a program to select a suitable grade of graphite was undertaken. Initially, graphites were compared based on published technical data. Graphite samples were then tested for thermal shock capacity in an electron beam test facility at the Sandia National Laboratory (SNLA) in Albuquerque, New Mexico, USA. 4 refs., 6 figs

  16. DETECTION OF BACTERIAL CYTOTOXIC ACTIVITIES FROM WATER-DAMAGED CEILING TILE MATERIAL FOLLOWING INCUBATION ON BLOOD AGAR

    Science.gov (United States)

    Samples of ceiling tiles with high levels of bacteria exhibited cytotoxic activities on a HEP-2 tissue culture assay. Ceiling tiles containing low levels of bacterial colonization did not show cytotoxic activities on the HEP-2 tissue culture assay. Using a spread plate procedure ...

  17. LASER monitoring system for the ATLAS Tile Calorimeter

    International Nuclear Information System (INIS)

    Viret, S.

    2010-01-01

    The ATLAS detector at the Large Hadron Collider (LHC) at CERN uses a scintillator-iron technique for its hadronic Tile Calorimeter (TileCal). Scintillating light is readout via 9852 photomultiplier tubes (PMTs). Calibration and monitoring of these PMTs are made using a LASER based system. Short light pulses are sent simultaneously into all the TileCal photomultiplier's tubes (PMTs) during ATLAS physics runs, thus providing essential information for ATLAS data quality and monitoring analyses. The experimental setup developed for this purpose is described as well as preliminary results obtained during ATLAS commissioning phase in 2008.

  18. Radioactivity level in Chinese building ceramic tile

    International Nuclear Information System (INIS)

    Xinwei, L.

    2004-01-01

    The activity concentrations of 226 Ra, 232 Th and 40 K have been determined by gamma ray spectrometry. The concentrations of 226 Ra, 232 Th and 40 K range from 158.3 to 1087.6, 91.7 to 1218.4, and 473.8 to 1031.3 Bq kg -1 for glaze, and from 63.5 to 131.4, 55.4 to 106.5, and 386.7 to 866.8 Bq kg -1 for ceramic tile, respectively. The measured activity concentrations for these radionuclides were compared with the reported data of other countries and with the typical world values. The radium equivalent activities (Ra eq ), external hazard index (H ex ) and internal hazard index (H in ) associated with the radionuclides were calculated. The Ra eq values of all ceramic tiles are lower than the limit of 370 Bq kg -1 . The values of Hex and H in calculated according to the Chinese criterion for ceramic tiles are less than unity. The Ra eq value for the glaze of glazed tile collected from some areas are >370 Bq kg -1 . (authors)

  19. Shared probe design and existing microarray reanalysis using PICKY

    Directory of Open Access Journals (Sweden)

    Chou Hui-Hsien

    2010-04-01

    Full Text Available Abstract Background Large genomes contain families of highly similar genes that cannot be individually identified by microarray probes. This limitation is due to thermodynamic restrictions and cannot be resolved by any computational method. Since gene annotations are updated more frequently than microarrays, another common issue facing microarray users is that existing microarrays must be routinely reanalyzed to determine probes that are still useful with respect to the updated annotations. Results PICKY 2.0 can design shared probes for sets of genes that cannot be individually identified using unique probes. PICKY 2.0 uses novel algorithms to track sharable regions among genes and to strictly distinguish them from other highly similar but nontarget regions during thermodynamic comparisons. Therefore, PICKY does not sacrifice the quality of shared probes when choosing them. The latest PICKY 2.1 includes the new capability to reanalyze existing microarray probes against updated gene sets to determine probes that are still valid to use. In addition, more precise nonlinear salt effect estimates and other improvements are added, making PICKY 2.1 more versatile to microarray users. Conclusions Shared probes allow expressed gene family members to be detected; this capability is generally more desirable than not knowing anything about these genes. Shared probes also enable the design of cross-genome microarrays, which facilitate multiple species identification in environmental samples. The new nonlinear salt effect calculation significantly increases the precision of probes at a lower buffer salt concentration, and the probe reanalysis function improves existing microarray result interpretations.

  20. QCALT: A tile calorimeter for KLOE-2 upgrade

    Energy Technology Data Exchange (ETDEWEB)

    Balla, A.; Ciambrone, P.; Corradi, G. [INFN, Laboratori Nazionali di Frascati, Frascati (Rm) (Italy); Martini, M., E-mail: matteo.martini@lnf.infn.it [INFN, Laboratori Nazionali di Frascati, Frascati (Rm) (Italy); Università degli studi Guglielmo Marconi, Rome (Italy); Paglia, C.; Pileggi, G.; Ponzio, B.; Saputi, A. [INFN, Laboratori Nazionali di Frascati, Frascati (Rm) (Italy); Tagnani, D. [INFN, Sezione di Roma 3, Rome (Italy)

    2013-08-01

    The upgrade of the DaΦne machine layout requires a modification of the size and position of the inner focusing quadrupoles of KLOE-2, thus asking for the realization of two new calorimeters, named QCALT, covering this area. To improve the reconstruction of K{sub L}→2π{sup 0} events with photons hitting the quadrupoles, a calorimeter with high efficiency to low energy photons (20–300 MeV), time resolution of less than 1 ns and space resolution of few cm, is needed. To match these requirements we are now constructing a scintillator tile calorimeter where each single tile is readout by mean of SiPM for a total granularity of 1760 channels. We show the design of the different calorimeter components and the present status of the construction.

  1. SIGMA: A System for Integrative Genomic Microarray Analysis of Cancer Genomes

    Directory of Open Access Journals (Sweden)

    Davies Jonathan J

    2006-12-01

    Full Text Available Abstract Background The prevalence of high resolution profiling of genomes has created a need for the integrative analysis of information generated from multiple methodologies and platforms. Although the majority of data in the public domain are gene expression profiles, and expression analysis software are available, the increase of array CGH studies has enabled integration of high throughput genomic and gene expression datasets. However, tools for direct mining and analysis of array CGH data are limited. Hence, there is a great need for analytical and display software tailored to cross platform integrative analysis of cancer genomes. Results We have created a user-friendly java application to facilitate sophisticated visualization and analysis such as cross-tumor and cross-platform comparisons. To demonstrate the utility of this software, we assembled array CGH data representing Affymetrix SNP chip, Stanford cDNA arrays and whole genome tiling path array platforms for cross comparison. This cancer genome database contains 267 profiles from commonly used cancer cell lines representing 14 different tissue types. Conclusion In this study we have developed an application for the visualization and analysis of data from high resolution array CGH platforms that can be adapted for analysis of multiple types of high throughput genomic datasets. Furthermore, we invite researchers using array CGH technology to deposit both their raw and processed data, as this will be a continually expanding database of cancer genomes. This publicly available resource, the System for Integrative Genomic Microarray Analysis (SIGMA of cancer genomes, can be accessed at http://sigma.bccrc.ca.

  2. Development and application of a microarray meter tool to optimize microarray experiments

    Directory of Open Access Journals (Sweden)

    Rouse Richard JD

    2008-07-01

    Full Text Available Abstract Background Successful microarray experimentation requires a complex interplay between the slide chemistry, the printing pins, the nucleic acid probes and targets, and the hybridization milieu. Optimization of these parameters and a careful evaluation of emerging slide chemistries are a prerequisite to any large scale array fabrication effort. We have developed a 'microarray meter' tool which assesses the inherent variations associated with microarray measurement prior to embarking on large scale projects. Findings The microarray meter consists of nucleic acid targets (reference and dynamic range control and probe components. Different plate designs containing identical probe material were formulated to accommodate different robotic and pin designs. We examined the variability in probe quality and quantity (as judged by the amount of DNA printed and remaining post-hybridization using three robots equipped with capillary printing pins. Discussion The generation of microarray data with minimal variation requires consistent quality control of the (DNA microarray manufacturing and experimental processes. Spot reproducibility is a measure primarily of the variations associated with printing. The microarray meter assesses array quality by measuring the DNA content for every feature. It provides a post-hybridization analysis of array quality by scoring probe performance using three metrics, a a measure of variability in the signal intensities, b a measure of the signal dynamic range and c a measure of variability of the spot morphologies.

  3. Effects of waste glass and waste foundry sand additions on reclaimed tiles containing sewage sludge ash.

    Science.gov (United States)

    Lin, Deng-Fong; Luo, Huan-Lin; Lin, Kuo-Liang; Liu, Zhe-Kun

    2017-07-01

    Applying sewage sludge ash (SSA) to produce reclaimed tiles is a promising recycling technology in resolving the increasing sludge wastes from wastewater treatment. However, performance of such reclaimed tiles is inferior to that of original ceramic tiles. Many researchers have therefore tried adding various industrial by-products to improve reclaimed tile properties. In this study, multiple materials including waste glass and waste foundry sand (WFS) were added in an attempt to improve physical and mechanical properties of reclaimed tiles with SSA. Samples with various combinations of clay, WFS, waste glass and SSA were made with three kiln temperatures of 1000°C, 1050°C, and 1100°C. A series of tests on the samples were next conducted. Test results showed that waste glass had positive effects on bending strength, water absorption and weight loss on ignition, while WFS contributed the most in reducing shrinkage, but could decrease the tile bending strength when large amount was added at a high kiln temperature. This study suggested that a combination of WFS from 10% to 15%, waste glass from 15% to 20%, SSA at 10% at a kiln temperature between 1000°C and 1050°C could result in quality reclaimed tiles with a balanced performance.

  4. Contributions of systematic tile drainage to watershed-scale phosphorus transport.

    Science.gov (United States)

    King, Kevin W; Williams, Mark R; Fausey, Norman R

    2015-03-01

    Phosphorus (P) transport from agricultural fields continues to be a focal point for addressing harmful algal blooms and nuisance algae in freshwater systems throughout the world. In humid, poorly drained regions, attention has turned to P delivery through subsurface tile drainage. However, research on the contributions of tile drainage to watershed-scale P losses is limited. The objective of this study was to evaluate long-term P movement through tile drainage and its manifestation at the watershed outlet. Discharge data and associated P concentrations were collected for 8 yr (2005-2012) from six tile drains and from the watershed outlet of a headwater watershed within the Upper Big Walnut Creek watershed in central Ohio. Results showed that tile drainage accounted for 47% of the discharge, 48% of the dissolved P, and 40% of the total P exported from the watershed. Average annual total P loss from the watershed was 0.98 kg ha, and annual total P loss from the six tile drains was 0.48 kg ha. Phosphorus loads in tile and watershed discharge tended to be greater in the winter, spring, and fall, whereas P concentrations were greatest in the summer. Over the 8-yr study, P transported in tile drains represented 90% of all measured concentrations exceeded recommended levels (0.03 mg L) for minimizing harmful algal blooms and nuisance algae. Thus, the results of this study show that in systematically tile-drained headwater watersheds, the amount of P delivered to surface waters via tile drains cannot be dismissed. Given the amount of P loss relative to typical application rates, development and implementation of best management practices (BMPs) must jointly consider economic and environmental benefits. Specifically, implementation of BMPs should focus on late fall, winter, and early spring seasons when most P loading occurs. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

  5. MARS: Microarray analysis, retrieval, and storage system

    Directory of Open Access Journals (Sweden)

    Scheideler Marcel

    2005-04-01

    Full Text Available Abstract Background Microarray analysis has become a widely used technique for the study of gene-expression patterns on a genomic scale. As more and more laboratories are adopting microarray technology, there is a need for powerful and easy to use microarray databases facilitating array fabrication, labeling, hybridization, and data analysis. The wealth of data generated by this high throughput approach renders adequate database and analysis tools crucial for the pursuit of insights into the transcriptomic behavior of cells. Results MARS (Microarray Analysis and Retrieval System provides a comprehensive MIAME supportive suite for storing, retrieving, and analyzing multi color microarray data. The system comprises a laboratory information management system (LIMS, a quality control management, as well as a sophisticated user management system. MARS is fully integrated into an analytical pipeline of microarray image analysis, normalization, gene expression clustering, and mapping of gene expression data onto biological pathways. The incorporation of ontologies and the use of MAGE-ML enables an export of studies stored in MARS to public repositories and other databases accepting these documents. Conclusion We have developed an integrated system tailored to serve the specific needs of microarray based research projects using a unique fusion of Web based and standalone applications connected to the latest J2EE application server technology. The presented system is freely available for academic and non-profit institutions. More information can be found at http://genome.tugraz.at.

  6. TileCal TDAQ/DCS communication

    CERN Document Server

    Solans, C; Arabidze, G; Carneiro Ferreira, B; Sotto-Maior Peralva, B

    2007-01-01

    This document describes the communication between the TDAQ and DCS systems of the Hadronic Tile Calorimeter detector of the ATLAS experiment, currently under commissioning phase at CERN. It is a further step on the TDAQ and DCS communication for TileCal operation. The aim of the implementation is to increase the robustness and understanding of the detector from the two systems involved. The basic principle observed is that the two systems operate independently in parallel. Hence, the knowledge of the status of the whole detector from each of the two systems is required for further analysis of the archived data.

  7. Microarray Я US: a user-friendly graphical interface to Bioconductor tools that enables accurate microarray data analysis and expedites comprehensive functional analysis of microarray results.

    Science.gov (United States)

    Dai, Yilin; Guo, Ling; Li, Meng; Chen, Yi-Bu

    2012-06-08

    Microarray data analysis presents a significant challenge to researchers who are unable to use the powerful Bioconductor and its numerous tools due to their lack of knowledge of R language. Among the few existing software programs that offer a graphic user interface to Bioconductor packages, none have implemented a comprehensive strategy to address the accuracy and reliability issue of microarray data analysis due to the well known probe design problems associated with many widely used microarray chips. There is also a lack of tools that would expedite the functional analysis of microarray results. We present Microarray Я US, an R-based graphical user interface that implements over a dozen popular Bioconductor packages to offer researchers a streamlined workflow for routine differential microarray expression data analysis without the need to learn R language. In order to enable a more accurate analysis and interpretation of microarray data, we incorporated the latest custom probe re-definition and re-annotation for Affymetrix and Illumina chips. A versatile microarray results output utility tool was also implemented for easy and fast generation of input files for over 20 of the most widely used functional analysis software programs. Coupled with a well-designed user interface, Microarray Я US leverages cutting edge Bioconductor packages for researchers with no knowledge in R language. It also enables a more reliable and accurate microarray data analysis and expedites downstream functional analysis of microarray results.

  8. METHOD FOR EVALUATING MOLD GROWTH ON CEILING TILE

    Science.gov (United States)

    A method to extract mold spores from porous ceiling tiles was developed using a masticator blender. Ceiling tiles were inoculated and analyzed using four species of mold. Statistical analysis comparing results obtained by masticator extraction and the swab method was performed. T...

  9. Characterization of an Ionization Readout Tile for nEXO

    Science.gov (United States)

    Jewell, M.; Schubert, A.; Cen, W. R.; Dalmasson, J.; DeVoe, R.; Fabris, L.; Gratta, G.; Jamil, A.; Li, G.; Odian, A.; Patel, M.; Pocar, A.; Qiu, D.; Wang, Q.; Wen, L. J.; Albert, J. B.; Anton, G.; Arnquist, I. J.; Badhrees, I.; Barbeau, P.; Beck, D.; Belov, V.; Bourque, F.; Brodsky, J. P.; Brown, E.; Brunner, T.; Burenkov, A.; Cao, G. F.; Cao, L.; Chambers, C.; Charlebois, S. A.; Chiu, M.; Cleveland, B.; Coon, M.; Craycraft, A.; Cree, W.; Côté, M.; Daniels, T.; Daugherty, S. J.; Daughhetee, J.; Delaquis, S.; Der Mesrobian-Kabakian, A.; Didberidze, T.; Dilling, J.; Ding, Y. Y.; Dolinski, M. J.; Dragone, A.; Fairbank, W.; Farine, J.; Feyzbakhsh, S.; Fontaine, R.; Fudenberg, D.; Giacomini, G.; Gornea, R.; Hansen, E. V.; Harris, D.; Hasan, M.; Heffner, M.; Hoppe, E. W.; House, A.; Hufschmidt, P.; Hughes, M.; Hößl, J.; Ito, Y.; Iverson, A.; Jiang, X. S.; Johnston, S.; Karelin, A.; Kaufman, L. J.; Koffas, T.; Kravitz, S.; Krücken, R.; Kuchenkov, A.; Kumar, K. S.; Lan, Y.; Leonard, D. S.; Li, S.; Li, Z.; Licciardi, C.; Lin, Y. H.; MacLellan, R.; Michel, T.; Mong, B.; Moore, D.; Murray, K.; Newby, R. J.; Ning, Z.; Njoya, O.; Nolet, F.; Odgers, K.; Oriunno, M.; Orrell, J. L.; Ostrovskiy, I.; Overman, C. T.; Ortega, G. S.; Parent, S.; Piepke, A.; Pratte, J.-F.; Radeka, V.; Raguzin, E.; Rao, T.; Rescia, S.; Retiere, F.; Robinson, A.; Rossignol, T.; Rowson, P. C.; Roy, N.; Saldanha, R.; Sangiorgio, S.; Schmidt, S.; Schneider, J.; Sinclair, D.; Skarpaas, K.; Soma, A. K.; St-Hilaire, G.; Stekhanov, V.; Stiegler, T.; Sun, X. L.; Tarka, M.; Todd, J.; Tolba, T.; Tsang, R.; Tsang, T.; Vachon, F.; Veeraraghavan, V.; Visser, G.; Vuilleumier, J.-L.; Wagenpfeil, M.; Weber, M.; Wei, W.; Wichoski, U.; Wrede, G.; Wu, S. X.; Wu, W. H.; Yang, L.; Yen, Y.-R.; Zeldovich, O.; Zhang, X.; Zhao, J.; Zhou, Y.; Ziegler, T.

    2018-01-01

    A new design for the anode of a time projection chamber, consisting of a charge-detecting "tile", is investigated for use in large scale liquid xenon detectors. The tile is produced by depositing 60 orthogonal metal charge-collecting strips, 3 mm wide, on a 10 cm × 10 cm fused-silica wafer. These charge tiles may be employed by large detectors, such as the proposed tonne-scale nEXO experiment to search for neutrinoless double-beta decay. Modular by design, an array of tiles can cover a sizable area. The width of each strip is small compared to the size of the tile, so a Frisch grid is not required. A grid-less, tiled anode design is beneficial for an experiment such as nEXO, where a wire tensioning support structure and Frisch grid might contribute radioactive backgrounds and would have to be designed to accommodate cycling to cryogenic temperatures. The segmented anode also reduces some degeneracies in signal reconstruction that arise in large-area crossed-wire time projection chambers. A prototype tile was tested in a cell containing liquid xenon. Very good agreement is achieved between the measured ionization spectrum of a 207Bi source and simulations that include the microphysics of recombination in xenon and a detailed modeling of the electrostatic field of the detector. An energy resolution σ/E=5.5% is observed at 570 keV, comparable to the best intrinsic ionization-only resolution reported in literature for liquid xenon at 936 V/cm.

  10. Orion EFT-1 Catalytic Tile Experiment Overview and Flight Measurements

    Science.gov (United States)

    Salazar, Giovanni; Amar, Adam; Hyatt, Andrew; Rezin, Marc D.

    2016-01-01

    This paper describes the design and results of a surface catalysis flight experiment flown on the Orion Multipurpose Crew Vehicle during Exploration Flight Test 1 (EFT1). Similar to previous Space Shuttle catalytic tile experiments, the present test consisted of a highly catalytic coating applied to an instrumented TPS tile. However, the present catalytic tile experiment contained significantly more instrumentation in order to better resolve the heating overshoot caused by the change in surface catalytic efficiency at the interface between two distinct materials. In addition to collecting data with unprecedented spatial resolution of the "overshoot" phenomenon, the experiment was also designed to prove if such a catalytic overshoot would be seen in turbulent flow in high enthalpy regimes. A detailed discussion of the results obtained during EFT1 is presented, as well as the challenges associated with data interpretation of this experiment. Results of material testing carried out in support of this flight experiment are also shown. Finally, an inverse heat conduction technique is employed to reconstruct the flight environments at locations upstream and along the catalytic coating. The data and analysis presented in this work will greatly contribute to our understanding of the catalytic "overshoot" phenomenon, and have a significant impact on the design of future spacecraft.

  11. Microarray BASICA: Background Adjustment, Segmentation, Image Compression and Analysis of Microarray Images

    Directory of Open Access Journals (Sweden)

    Jianping Hua

    2004-01-01

    Full Text Available This paper presents microarray BASICA: an integrated image processing tool for background adjustment, segmentation, image compression, and analysis of cDNA microarray images. BASICA uses a fast Mann-Whitney test-based algorithm to segment cDNA microarray images, and performs postprocessing to eliminate the segmentation irregularities. The segmentation results, along with the foreground and background intensities obtained with the background adjustment, are then used for independent compression of the foreground and background. We introduce a new distortion measurement for cDNA microarray image compression and devise a coding scheme by modifying the embedded block coding with optimized truncation (EBCOT algorithm (Taubman, 2000 to achieve optimal rate-distortion performance in lossy coding while still maintaining outstanding lossless compression performance. Experimental results show that the bit rate required to ensure sufficiently accurate gene expression measurement varies and depends on the quality of cDNA microarray images. For homogeneously hybridized cDNA microarray images, BASICA is able to provide from a bit rate as low as 5 bpp the gene expression data that are 99% in agreement with those of the original 32 bpp images.

  12. Induced superhydrophobic and antimicrobial character of zinc metal modified ceramic wall tile surfaces

    Science.gov (United States)

    Özcan, Selçuk; Açıkbaş, Gökhan; Çalış Açıkbaş, Nurcan

    2018-04-01

    Hydrophobic surfaces are also known to have antimicrobial effect by restricting the adherence of microorganisms. However, ceramic products are produced by high temperature processes resulting in a hydrophilic surface. In this study, an industrial ceramic wall tile glaze composition was modified by the inclusion of metallic zinc powder in the glaze suspension applied on the pre-sintered wall tile bodies by spraying. The glazed tiles were gloss fired at industrially applicable peak temperatures ranging from 980 °C to 1100 °C. The fired tile surfaces were coated with a commercial fluoropolymer avoiding water absorption. The surfaces were characterized with SEM, EDS, XRD techniques, roughness, sessile water drop contact angle, surface energy measurements, and standard antimicrobial tests. The surface hydrophobicity and the antimicrobial activity results were compared with that of unmodified, uncoated gloss fired wall tiles. A superhydrophobic contact angle of 150° was achieved at 1000 °C peak temperature due to the formation of micro-structured nanocrystalline zinc oxide granules providing a specific surface topography. At higher peak temperatures the hydrophobicity was lost as the specific granular surface topography deteriorated with the conversion of zinc oxide granules to the ubiquitous willemite crystals embedded in the glassy matrix. The antimicrobial efficacy also correlated with the hydrophobic character.

  13. ATLAS Tile Calorimeter Upgrades for HL-LHC

    CERN Document Server

    Angelidakis, Stylianos; The ATLAS collaboration

    2018-01-01

    The High-Luminosity phase of the Large Hadron Collider (LHC) at CERN is expected to begin in 2026, delivering a luminosity of ~5×10^34 cm −2 s −1 , with up to 200 interactions per 25 ns bunch crossing. In order to cope with the expected high trigger rates and intense radiation conditions, the ATLAS Tile Calorimeter will be upgraded with readout architectures that will allow to maintain an optimal performance in its future operation.

  14. A bipedal DNA motor that travels back and forth between two DNA origami tiles.

    Science.gov (United States)

    Liber, Miran; Tomov, Toma E; Tsukanov, Roman; Berger, Yaron; Nir, Eyal

    2015-02-04

    In this work, the successful operation of a dynamic DNA device constructed from two DNA origami building blocks is reported. The device includes a bipedal walker that strides back and forth between the two origami tiles. Two different DNA origami tiles are first prepared separately; they are then joined together in a controlled manner by a set of DNA strands to form a stable track in high yield as confirmed by single-molecule fluorescence (SMF). Second, a bipedal DNA motor, initially attached to one of the two origami units and operated by sequential interaction with "fuel" and "antifuel" DNA strands, moves from one origami tile to another and then back again. The operational yield, measured by SMF, was similar to that of a motor operating on a similar track embedded in a single origami tile, confirming that the transfer across the junction from one tile to the other does not result in dissociation that is any more than that of steps on a single tile. These results demonstrate that moving parts can reliably travel from one origami unit to another, and it demonstrates the feasibility of dynamic DNA molecular machines that are made of more than a single origami building block. This study is a step toward the development of motors that can stride over micrometer distances. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  15. Frost damage of roof tiles: A study on moisture boundary conditions

    OpenAIRE

    Iba, Chiemi; Ueda, Ayumi; Hokoi, Shuichi

    2015-01-01

    Freeze-thaw cycles are the most serious cause of roof tile deterioration; thus, it is important to know the temperature and moisture distributions in tile materials for protection against frost damage. This study focused on moisture boundary conditions for air layers under the tile. Temperature and humidity were measured using model structures with different types of roof tiles. The results showed that the temperatures around the roof were strongly influenced by solar and longwave radiation, ...

  16. Principles of gene microarray data analysis.

    Science.gov (United States)

    Mocellin, Simone; Rossi, Carlo Riccardo

    2007-01-01

    The development of several gene expression profiling methods, such as comparative genomic hybridization (CGH), differential display, serial analysis of gene expression (SAGE), and gene microarray, together with the sequencing of the human genome, has provided an opportunity to monitor and investigate the complex cascade of molecular events leading to tumor development and progression. The availability of such large amounts of information has shifted the attention of scientists towards a nonreductionist approach to biological phenomena. High throughput technologies can be used to follow changing patterns of gene expression over time. Among them, gene microarray has become prominent because it is easier to use, does not require large-scale DNA sequencing, and allows for the parallel quantification of thousands of genes from multiple samples. Gene microarray technology is rapidly spreading worldwide and has the potential to drastically change the therapeutic approach to patients affected with tumor. Therefore, it is of paramount importance for both researchers and clinicians to know the principles underlying the analysis of the huge amount of data generated with microarray technology.

  17. Plasma surface interactions at the JET X-point tiles

    International Nuclear Information System (INIS)

    Martinelli, A.P.; Behrisch, R.; Coad, J.P.; Kock, L. de

    1989-01-01

    Operation with a magnetic divertor, which leads to a zero poloidal field inside the volume of the discharge vessel (the X-point) has led to substantial improvements in confinement time in JET. In this mode the diverted plasma is conducted to a large number of graphite tiles (X-point tiles) near the top of the vessel. The power handling capability of these tiles limits the maximum additional heating power to the discharge. The study of the surface modifications of the X-point tiles of JET is therefore of interest both to correlate the magnetic configuration and plasma particle and energy fluxes with the surface modifications, and also to get information about the erosion and deposition at these wall areas. (author) 5 refs., 4 figs

  18. Surface impurity removal from DIII-D graphite tiles by boron carbide grit blasting

    International Nuclear Information System (INIS)

    Lee, R.L.; Hollerbach, M.A.; Holtrop, K.L.; Kellman, A.G.; Taylor, P.L.; West, W.P.

    1993-11-01

    During the latter half of 1992, the DIII-D tokamak at General Atomics (GA) underwent several modifications of its interior. One of the major tasks involved the removal of accumulated metallic impurities from the surface of the graphite tiles used to line the plasma facing surfaces inside of the tokamak. Approximately 1500 graphite tiles and 100 boron nitride tiles from the tokamak were cleaned to remove the metallic impurities. The cleaning process consisted of several steps: the removed graphite tiles were permanently marked, surface blasted using boron carbide (B 4 C) grit media (approximately 37 μm. diam.), ultrasonically cleaned in ethanol to remove loose dust, and outgassed at 1000 degrees C. Tests were done using, graphite samples and different grit blaster settings to determine the optimum propellant and abrasive media pressures to remove a graphite layer approximately 40-50 μm deep and yet produce a reasonably smooth finish. EDX measurements revealed that the blasting technique reduced the surface Ni, Cr, and Fe impurity levels to those of virgin graphite. In addition to the surface impurity removal, tritium monitoring was performed throughout the cleaning process. A bubbler system was set up to monitor the tritium level in the exhaust gas from the grit blaster unit. Surface wipes were also performed on over 10% of the tiles. Typical surface tritium concentrations of the tiles were reduced from about 500 dpm/100 cm 2 to less than 80 dpm/100 cm 2 following the cleaning. This tile conditioning, and the installation of additional graphite tiles to cover a high fraction of the metallic plasma facing surfaces, has substantially reduced metallic impurities in the plasma discharges which has allowed rapid recovery from a seven-month machine opening and regimes of enhanced plasma energy confinement to be more readily obtained. Safety issues concerning blaster operator exposure to carcinogenic metals and radioactive tritium will also be addressed

  19. Optimising the bioreceptivity of porous glass tiles based on colonization by the alga Chlorella vulgaris

    Energy Technology Data Exchange (ETDEWEB)

    Ferrándiz-Mas, V., E-mail: v.ferrandiz@imperial.ac.uk [Department of Civil and Environmental Engineering, Imperial College London, London SW7 2BU (United Kingdom); Bond, T., E-mail: t.bond@imperial.ac.uk [Department of Civil and Environmental Engineering, Imperial College London, London SW7 2BU (United Kingdom); Zhang, Z., E-mail: zhen.zhang14@imperial.ac.uk [Department of Civil and Environmental Engineering, Imperial College London, London SW7 2BU (United Kingdom); Melchiorri, J., E-mail: jpmelchiorri@gmail.com [ARBOREA Research, Bessemer Building, Prince Consort Road, London SW7 2AZ (United Kingdom); Cheeseman, C.R., E-mail: c.cheeseman@imperial.ac.uk [Department of Civil and Environmental Engineering, Imperial College London, London SW7 2BU (United Kingdom)

    2016-09-01

    Green façades on buildings can mitigate greenhouse gas emissions. An option to obtain green facades is through the natural colonisation of construction materials. This can be achieved by engineering bioreceptive materials. Bioreceptivity is the susceptibility of a material to be colonised by living organisms. The aim of this research was to develop tiles made by sintering granular waste glass that were optimised for bioreceptivity of organisms capable of photosynthesis. Tiles were produced by pressing recycled soda-lime glass with a controlled particle size distribution and sintering compacted samples at temperatures between 680 and 740 °C. The primary bioreceptivity of the tiles was evaluated by quantifying colonisation by the algae Chlorella vulgaris (C. vulgaris), which was selected as a model photosynthetic micro-organism. Concentrations of C. vulgaris were measured using chlorophyll-a extraction. Relationships between bioreceptivity and the properties of the porous glass tile, including porosity, sorptivity, translucency and pH are reported. Capillary porosity and water sorptivity were the key factors influencing the bioreceptivity of porous glass. Maximum C. vulgaris growth and colonisation was obtained for tiles sintered at 700 °C, with chlorophyll-a concentrations reaching up to 11.1 ± 0.4 μg/cm{sup 2} of tile. Bioreceptivity was positively correlated with sorptivity and porosity and negatively correlated with light transmittance. The research demonstrates that the microstructure of porous glass, determined by the processing conditions, significantly influences bioreceptivity. Porous glass tiles with high bioreceptivity that are colonised by photosynthetic algae have the potential to form carbon-negative façades for buildings and green infrastructure. - Highlights: • Porous tiles made by sintering waste glass at variable temperatures • Bioreceptivity assessed by measuring colonisation by the algae C. vulgaris • Tiles sintered at 700 °C gave

  20. Optimising the bioreceptivity of porous glass tiles based on colonization by the alga Chlorella vulgaris

    International Nuclear Information System (INIS)

    Ferrándiz-Mas, V.; Bond, T.; Zhang, Z.; Melchiorri, J.; Cheeseman, C.R.

    2016-01-01

    Green façades on buildings can mitigate greenhouse gas emissions. An option to obtain green facades is through the natural colonisation of construction materials. This can be achieved by engineering bioreceptive materials. Bioreceptivity is the susceptibility of a material to be colonised by living organisms. The aim of this research was to develop tiles made by sintering granular waste glass that were optimised for bioreceptivity of organisms capable of photosynthesis. Tiles were produced by pressing recycled soda-lime glass with a controlled particle size distribution and sintering compacted samples at temperatures between 680 and 740 °C. The primary bioreceptivity of the tiles was evaluated by quantifying colonisation by the algae Chlorella vulgaris (C. vulgaris), which was selected as a model photosynthetic micro-organism. Concentrations of C. vulgaris were measured using chlorophyll-a extraction. Relationships between bioreceptivity and the properties of the porous glass tile, including porosity, sorptivity, translucency and pH are reported. Capillary porosity and water sorptivity were the key factors influencing the bioreceptivity of porous glass. Maximum C. vulgaris growth and colonisation was obtained for tiles sintered at 700 °C, with chlorophyll-a concentrations reaching up to 11.1 ± 0.4 μg/cm"2 of tile. Bioreceptivity was positively correlated with sorptivity and porosity and negatively correlated with light transmittance. The research demonstrates that the microstructure of porous glass, determined by the processing conditions, significantly influences bioreceptivity. Porous glass tiles with high bioreceptivity that are colonised by photosynthetic algae have the potential to form carbon-negative façades for buildings and green infrastructure. - Highlights: • Porous tiles made by sintering waste glass at variable temperatures • Bioreceptivity assessed by measuring colonisation by the algae C. vulgaris • Tiles sintered at 700 °C gave maximum

  1. Fabrication of unglazed ceramic tile using dense structured sago waste and clay composite

    International Nuclear Information System (INIS)

    Aripin; S Tani; S Mitsudo; T Saito; T Idehara

    2010-01-01

    In Indonesia, the sago processing industry generates every year huge amount of sago waste, and converting this waste into a useful material is possible. In the present study, physical properties of dense structured sago waste and clay composite were investigated in order to study the feasibility of reuse this sample as raw material in the producing of ceramics. Firstly, the chemical composition of ash (obtained from the sago waste) and clay was characterized. The prepared sample was sintered at the temperature range from 800 to 1,200 °C using electric furnace. The density, linear shrinkage and water absorption of the sintered sample were determined by using the Archimedes' method. The experimental result indicated that the density of the sintered sample increased with increasing sintering temperature up to 1100°C and then slightly decreased afterward. The water absorption of the products decreased with an increase in sintering temperature. In the sintered sample at 1,100 °C, the water absorption decreased rapidly and water adsorption of less than 1 % was achieved. This water absorption was less than 5 % which was needed for unglazed floor tile. The result of water adsorption suggest that it is possible to use this sample as a raw material for producing the ceramic floor tile. (author)

  2. Tile-Based Semisupervised Classification of Large-Scale VHR Remote Sensing Images

    Directory of Open Access Journals (Sweden)

    Haikel Alhichri

    2018-01-01

    Full Text Available This paper deals with the problem of the classification of large-scale very high-resolution (VHR remote sensing (RS images in a semisupervised scenario, where we have a limited training set (less than ten training samples per class. Typical pixel-based classification methods are unfeasible for large-scale VHR images. Thus, as a practical and efficient solution, we propose to subdivide the large image into a grid of tiles and then classify the tiles instead of classifying pixels. Our proposed method uses the power of a pretrained convolutional neural network (CNN to first extract descriptive features from each tile. Next, a neural network classifier (composed of 2 fully connected layers is trained in a semisupervised fashion and used to classify all remaining tiles in the image. This basically presents a coarse classification of the image, which is sufficient for many RS application. The second contribution deals with the employment of the semisupervised learning to improve the classification accuracy. We present a novel semisupervised approach which exploits both the spectral and spatial relationships embedded in the remaining unlabelled tiles. In particular, we embed a spectral graph Laplacian in the hidden layer of the neural network. In addition, we apply regularization of the output labels using a spatial graph Laplacian and the random Walker algorithm. Experimental results obtained by testing the method on two large-scale images acquired by the IKONOS2 sensor reveal promising capabilities of this method in terms of classification accuracy even with less than ten training samples per class.

  3. Laser Calibration of the ATLAS Tile Calorimeter

    CERN Document Server

    Di Gregorio, Giulia; The ATLAS collaboration

    2017-01-01

    High performance stability of the ATLAS Tile Calorimeter is achieved with a set of calibration procedures. One step of the calibration procedure is based on measurements of the response stability to laser excitation of the PMTs that are used to readout the calorimeter cells. A facility to study in lab the PMT stability response is operating in the PISA-INFN laboratories since 2015. Goals of the tests in lab are to study the time evolution of the PMT response to reproduce and to understand the origin of the response drifts seen with the PMT mounted on the Tile calorimeter in its normal operating during LHC run I and run II. A new statistical approach was developed to measure drift of the absolute gain. This approach was applied to both the ATLAS laser calibration data and to data collected in the Pisa local laboratory. The preliminary results from these two studies are shown.

  4. Laser calibration of the ATLAS Tile Calorimeter

    CERN Document Server

    Di Gregorio, Giulia; The ATLAS collaboration

    2017-01-01

    High performance stability of the ATLAS Tile calorimeter is achieved with a set of calibration procedures. One step of the calibrtion procedure is based on measurements of the response stability to laser excitation of the photomultipliers (PMTs) that are used to readout the calorimeter cells. A facility to study in lab the PMT stability response is operating in the PISA-INFN laboratories since 2015. Goals of the test in lab are to study the time evolution of the PMT response to reproduce and to understand the origin of the resonse drifts seen with the PMT mounted on the Tile calorimeter in its normal operation during LHC run I and run II. A new statistical approach was developed to measure the drift of the absolute gain. This approach was applied to both the ATLAS laser calibration data and to the data collected in the Pisa local laboratory. The preliminary results from these two studies are shown.

  5. An automated data management/analysis system for space shuttle orbiter tiles. [stress analysis

    Science.gov (United States)

    Giles, G. L.; Ballas, M.

    1982-01-01

    An engineering data management system was combined with a nonlinear stress analysis program to provide a capability for analyzing a large number of tiles on the space shuttle orbiter. Tile geometry data and all data necessary of define the tile loads environment accessed automatically as needed for the analysis of a particular tile or a set of tiles. User documentation provided includes: (1) description of computer programs and data files contained in the system; (2) definitions of all engineering data stored in the data base; (3) characteristics of the tile anaytical model; (4) instructions for preparation of user input; and (5) a sample problem to illustrate use of the system. Description of data, computer programs, and analytical models of the tile are sufficiently detailed to guide extension of the system to include additional zones of tiles and/or additional types of analyses

  6. An IPMI-compliant control system for the ATLAS TileCal Phase-II Upgrade PreProcessor module

    CERN Document Server

    Zuccarello, Pedro Diego; The ATLAS collaboration

    2016-01-01

    Abstract–The electronics of the hadronic calorimeter of the ATLAS detector (TileCal) is being redesigned as part of the works that will lead to the High Luminosity Large Hadron Collider (HL-LHC). TileCal electronics is divided in front and back-end subsystems. While the front-end is inside the detector, the back-end is located off-detector inserted in an ATCA shelf. The main objective of this paper is to describe the work being carried out in the hardware management aspects of the back-end electronics of TileCal.

  7. A comprehensive hybridization model allows whole HERV transcriptome profiling using high density microarray.

    Science.gov (United States)

    Becker, Jérémie; Pérot, Philippe; Cheynet, Valérie; Oriol, Guy; Mugnier, Nathalie; Mommert, Marine; Tabone, Olivier; Textoris, Julien; Veyrieras, Jean-Baptiste; Mallet, François

    2017-04-08

    Human endogenous retroviruses (HERVs) have received much attention for their implications in the etiology of many human diseases and their profound effect on evolution. Notably, recent studies have highlighted associations between HERVs expression and cancers (Yu et al., Int J Mol Med 32, 2013), autoimmunity (Balada et al., Int Rev Immunol 29:351-370, 2010) and neurological (Christensen, J Neuroimmune Pharmacol 5:326-335, 2010) conditions. Their repetitive nature makes their study particularly challenging, where expression studies have largely focused on individual loci (De Parseval et al., J Virol 77:10414-10422, 2003) or general trends within families (Forsman et al., J Virol Methods 129:16-30, 2005; Seifarth et al., J Virol 79:341-352, 2005; Pichon et al., Nucleic Acids Res 34:e46, 2006). To refine our understanding of HERVs activity, we introduce here a new microarray, HERV-V3. This work was made possible by the careful detection and annotation of genomic HERV/MaLR sequences as well as the development of a new hybridization model, allowing the optimization of probe performances and the control of cross-reactions. RESULTS: HERV-V3 offers an almost complete coverage of HERVs and their ancestors (mammalian apparent LTR-retrotransposons, MaLRs) at the locus level along with four other repertoires (active LINE-1 elements, lncRNA, a selection of 1559 human genes and common infectious viruses). We demonstrate that HERV-V3 analytical performances are comparable with commercial Affymetrix arrays, and that for a selection of tissue/pathological specific loci, the patterns of expression measured on HERV-V3 is consistent with those reported in the literature. Given its large HERVs/MaLRs coverage and additional repertoires, HERV-V3 opens the door to multiple applications such as enhancers and alternative promoters identification, biomarkers identification as well as the characterization of genes and HERVs/MaLRs modulation caused by viral infection.

  8. Calibration and monitoring of the ATLAS Tile calorimeter

    CERN Document Server

    Boumediene, Djamel Eddine; The ATLAS collaboration

    2017-01-01

    The ATLAS Tile Calorimeter (TileCal) is the central section of the hadronic calorimeter of the ATLAS experiment and provides important information for reconstruction of hadrons, jets, hadronic decays of tau leptons and missing transverse energy. This sampling calorimeter uses steel plates as absorber and scintillating tiles as active medium. The light produced by the passage of charged particles is transmitted by wavelength shifting fibres to photomultiplier tubes (PMTs). PMT signals are then digitized at 40~MHz and stored on detector and are only transferred off detector once the first level trigger acceptance has been confirmed. The readout is segmented into about 5000 cells (longitudinally and transversally), each of them being read out by two PMTs in parallel. To calibrate and monitor the stability and performance of each part of the readout chain, a set of calibration systems is used. The TileCal calibration system comprises Cesium radioactive sources, laser, charge injection elements and an integrator b...

  9. ATLAS Tile calorimeter calibration and monitoring systems

    Science.gov (United States)

    Chomont, Arthur; ATLAS Collaboration

    2017-11-01

    The ATLAS Tile Calorimeter (TileCal) is the central section of the hadronic calorimeter of the ATLAS experiment and provides important information for reconstruction of hadrons, jets, hadronic decays of tau leptons and missing transverse energy. This sampling calorimeter uses steel plates as absorber and scintillating tiles as active medium. The light produced by the passage of charged particles is transmitted by wavelength shifting fibres to photomultiplier tubes (PMTs), located on the outside of the calorimeter. The readout is segmented into about 5000 cells (longitudinally and transversally), each of them being read out by two PMTs in parallel. To calibrate and monitor the stability and performance of each part of the readout chain during the data taking, a set of calibration systems is used. The TileCal calibration system comprises cesium radioactive sources, Laser and charge injection elements, and allows for monitoring and equalization of the calorimeter response at each stage of the signal production, from scintillation light to digitization. Based on LHC Run 1 experience, several calibration systems were improved for Run 2. The lessons learned, the modifications, and the current LHC Run 2 performance are discussed.

  10. Thermoluminescence study of materials (natural minerals) used in ceramic tiles industry

    Energy Technology Data Exchange (ETDEWEB)

    Murthy, K V R, E-mail: drmurthykvr@yahoo.com [Display Materials Laboratory Applied Physics Department Faculty of Technology and Engineering M.S. University of Baroda, Baroda-390 001 (India)

    2009-07-15

    Mother earth is giving many materials in the natural form as well as in mineral form. Among them the marbles, granites and other variety of slabs for house hold flooring purposes. The people demand for variety of flooring materials leads to develop various types of ceramic tile. In India ceramic tiles industry is one of the fast growing one. More than two hundred units are manufacturing the ceramic tiles situated around Morbi, Rajkot, Gujarat, India. The basic raw materials required for manufacturing the various types of ceramic tiles are natural minerals. The following are the minerals used to manufacture the ceramic tiles i.e. quartz, feldspar, zircon, china clay, talc, grok, Aluminum oxide etc.,

  11. Thermoluminescence study of materials (natural minerals) used in ceramic tiles industry

    International Nuclear Information System (INIS)

    Murthy, K V R

    2009-01-01

    Mother earth is giving many materials in the natural form as well as in mineral form. Among them the marbles, granites and other variety of slabs for house hold flooring purposes. The people demand for variety of flooring materials leads to develop various types of ceramic tile. In India ceramic tiles industry is one of the fast growing one. More than two hundred units are manufacturing the ceramic tiles situated around Morbi, Rajkot, Gujarat, India. The basic raw materials required for manufacturing the various types of ceramic tiles are natural minerals. The following are the minerals used to manufacture the ceramic tiles i.e. quartz, feldspar, zircon, china clay, talc, grok, Aluminum oxide etc.,

  12. Combustion Joining of Regolith Tiles for In-Situ Fabrication of Launch/Landing Pads on the Moon and Mars

    Science.gov (United States)

    Ferguson, Robert E.; Shafirovich, Evgeny; Mantovani, James G.

    2017-01-01

    To mitigate dust problems during launch/landing operations in lunar and Mars missions, it is desired to build solid pads on the surface. Recently, strong tiles have been fabricated from lunar regolith simulants using high-temperature sintering. The present work investigates combustion joining of these tiles through the use of exothermic intermetallic reactions. Specifically, nickel/aluminum (1:1 mole ratio) mixture was placed in a gap between the tiles sintered from JSC-1A lunar regolith simulant. Upon ignition by a laser, a self-sustained propagation of the combustion front over the mixture occurred. Joining was improved with increasing the tile thickness from 6.3 mm to 12.7 mm. The temperatures sufficient for melting the glass phase of JSC-1A were recorded for 12.7-mm tiles, which explains the observed better joining.

  13. GROWTH EVALUATION OF FUNGI (PENICILLIUM AND ASPERGILLUS SPP.) ON CEILING TILES

    Science.gov (United States)

    The paper gives results of an evaluation of the potential for fungal growth on four different ceiling tiles in static chambers. It was found that even new ceiling tiles supported fungal growth under favorable conditions. Used ceiling tiles appeared to be more susceptible to funga...

  14. Assessment of a direct hybridization microarray strategy for comprehensive monitoring of genetically modified organisms (GMOs).

    Science.gov (United States)

    Turkec, Aydin; Lucas, Stuart J; Karacanli, Burçin; Baykut, Aykut; Yuksel, Hakki

    2016-03-01

    Detection of GMO material in crop and food samples is the primary step in GMO monitoring and regulation, with the increasing number of GM events in the world market requiring detection solutions with high multiplexing capacity. In this study, we test the suitability of a high-density oligonucleotide microarray platform for direct, quantitative detection of GMOs found in the Turkish feed market. We tested 1830 different 60nt probes designed to cover the GM cassettes from 12 different GM cultivars (3 soya, 9 maize), as well as plant species-specific and contamination controls, and developed a data analysis method aiming to provide maximum throughput and sensitivity. The system was able specifically to identify each cultivar, and in 10/12 cases was sensitive enough to detect GMO DNA at concentrations of ⩽1%. These GMOs could also be quantified using the microarray, as their fluorescence signals increased linearly with GMO concentration. Copyright © 2015 Elsevier Ltd. All rights reserved.

  15. Principal minors and rhombus tilings

    International Nuclear Information System (INIS)

    Kenyon, Richard; Pemantle, Robin

    2014-01-01

    The algebraic relations between the principal minors of a generic n × n matrix are somewhat mysterious, see e.g. Lin and Sturmfels (2009 J. Algebra 322 4121–31). We show, however, that by adding in certain almost principal minors, the ideal of relations is generated by translations of a single relation, the so-called hexahedron relation, which is a composition of six cluster mutations. We give in particular a Laurent-polynomial parameterization of the space of n × n matrices, whose parameters consist of certain principal and almost principal minors. The parameters naturally live on vertices and faces of the tiles in a rhombus tiling of a convex 2n-gon. A matrix is associated to an equivalence class of tilings, all related to each other by Yang–Baxter-like transformations. By specializing the initial data we can similarly parameterize the space of Hermitian symmetric matrices over R,C or H the quaternions. Moreover by further specialization we can parametrize the space of positive definite matrices over these rings. This article is part of a special issue of Journal of Physics A: Mathematical and Theoretical devoted to ‘Cluster algebras mathematical physics’. (paper)

  16. Evaluation of the thermal comfort of ceramic floor tiles

    Directory of Open Access Journals (Sweden)

    Carmeane Effting

    2007-09-01

    Full Text Available In places where people are bare feet, the thermal sensation of cold or hot depends on the environmental conditions and material properties including its microstructure and crustiness surface. The uncomforting can be characterized by heated floor surfaces in external environments which are exposed to sun radiation (swimming polls areas or by cold floor surfaces in internal environments (bed rooms, path rooms. The property named thermal effusivity which defines the interface temperature when two semi-infinite solids are putted in perfect contact. The introduction of the crustiness surface on the ceramic tiles interferes in the contact temperature and also it can be a strategy to obtain ceramic tiles more comfortable. Materials with low conductivities and densities can be obtained by porous inclusion are due particularly to the processing conditions usually employed. However, the presence of pores generally involves low mechanical strength. This work has the objective to evaluate the thermal comfort of ceramics floor obtained by incorporation of refractory raw materials (residue of the polishing of the porcelanato in industrial atomized ceramic powder, through the thermal and mechanical properties. The theoretical and experimental results show that the porosity and crustiness surface increases; there is sensitive improvement in the comfort by contact.

  17. High precision laser control of the ATLAS tile-calorimeter module mass production at JINR

    International Nuclear Information System (INIS)

    Batusov, V.; Budagov, Yu.; Flyagin, V.; Khubua, D.; Lomakin, Yu.; Lyablin, M.; Rusakovich, N.; Shabalin, D.; Topilin, N.; Nessi, M.

    2001-01-01

    We present a short description of our last few years experience in the quality control of the ATLAS hadron barrel tile-calorimeter module mass production at JINR. A Laser Measurement System (LMS) proposed and realized in Dubna guarantees a high-precision module assembly. The non-planarity of module size surfaces (1.9x5.6 m) controlled area is well within the required ±0.6 mm tolerance for each of JINR assembled modules. The module assembly technique achieved with the LMS system allows us to deliver to CERN one module every 2 weeks. This laser-based measurement system could be used in future for the control measurement of other large-scale units during the ATLAS assembly

  18. Nanotechnology: moving from microarrays toward nanoarrays.

    Science.gov (United States)

    Chen, Hua; Li, Jun

    2007-01-01

    Microarrays are important tools for high-throughput analysis of biomolecules. The use of microarrays for parallel screening of nucleic acid and protein profiles has become an industry standard. A few limitations of microarrays are the requirement for relatively large sample volumes and elongated incubation time, as well as the limit of detection. In addition, traditional microarrays make use of bulky instrumentation for the detection, and sample amplification and labeling are quite laborious, which increase analysis cost and delays the time for obtaining results. These problems limit microarray techniques from point-of-care and field applications. One strategy for overcoming these problems is to develop nanoarrays, particularly electronics-based nanoarrays. With further miniaturization, higher sensitivity, and simplified sample preparation, nanoarrays could potentially be employed for biomolecular analysis in personal healthcare and monitoring of trace pathogens. In this chapter, it is intended to introduce the concept and advantage of nanotechnology and then describe current methods and protocols for novel nanoarrays in three aspects: (1) label-free nucleic acids analysis using nanoarrays, (2) nanoarrays for protein detection by conventional optical fluorescence microscopy as well as by novel label-free methods such as atomic force microscopy, and (3) nanoarray for enzymatic-based assay. These nanoarrays will have significant applications in drug discovery, medical diagnosis, genetic testing, environmental monitoring, and food safety inspection.

  19. Tiling as a Durable Abstraction for Parallelism and Data Locality

    Energy Technology Data Exchange (ETDEWEB)

    Unat, Didem [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Chan, Cy P. [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Zhang, Weiqun [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Bell, John [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Shalf, John [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

    2013-11-18

    Tiling is a useful loop transformation for expressing parallelism and data locality. Automated tiling transformations that preserve data-locality are increasingly important due to hardware trends towards massive parallelism and the increasing costs of data movement relative to the cost of computing. We propose TiDA as a durable tiling abstraction that centralizes parameterized tiling information within array data types with minimal changes to the source code. The data layout information can be used by the compiler and runtime to automatically manage parallelism, optimize data locality, and schedule tasks intelligently. In this study, we present the design features and early interface of TiDA along with some preliminary results.

  20. Research about the number of D-points of -tiling in given ellipse

    Directory of Open Access Journals (Sweden)

    Xianglin WEI

    2017-04-01

    Full Text Available An Archimedean tiling is a tiling of the plane by one type of regular polygon or several types of regular polygons, and every vertex of the tiling has the same vertex characteristics. There are 11 Archimedean tiling, and this paper studies -tiling, which is an Archimedean tiling generated by squares and regular octagons in the plane, and every vertex is associated with one square and two octagons. This paper studies the number of vertices contained in an ellipse in -tiling. Through analysing the sequence of vertices lying on half chord in the ellipse, and using the method of the geometry of number and congruence in number theory, it presents an algorithm about the value of the number of vertices contained in the ellipse, and obtains a formula of limit about the number of vertices and the square of short semi-axis of the ellipse. It is proved that the value of limit is connected with the area of the corresponding central polygon. The algorithm and the formula of limit are very useful for the study of related problems in other Archimedean tilings.

  1. A simple gold nanoparticle-mediated immobilization method to fabricate highly homogeneous DNA microarrays having higher capacities than those prepared by using conventional techniques

    International Nuclear Information System (INIS)

    Jung, Cheulhee; Mun, Hyo Young; Li, Taihua; Park, Hyun Gyu

    2009-01-01

    A simple, highly efficient immobilization method to fabricate DNA microarrays, that utilizes gold nanoparticles as the mediator, has been developed. The fabrication method begins with electrostatic attachment of amine-modified DNA to gold nanoparticles. The resulting gold-DNA complexes are immobilized on conventional amine or aldehyde functionalized glass slides. By employing gold nanoparticles as the immobilization mediator, implementation of this procedure yields highly homogeneous microarrays that have higher binding capacities than those produced by conventional methods. This outcome is due to the increased three-dimensional immobilization surface provided by the gold nanoparticles as well as the intrinsic effects of gold on emission properties. This novel immobilization strategy gives microarrays that produce more intense hybridization signals for the complementary DNA. Furthermore, the silver enhancement technique, made possible only in the case of immobilized gold nanoparticles on the microarrays, enables simple monitoring of the integrity of the immobilized DNA probe.

  2. Radioactive sources for ATLAS hadron tile calorimeter calibration

    International Nuclear Information System (INIS)

    Budagov, Yu.; Cavalli-Sforza, M.; Ivanyushenkov, Yu.

    1997-01-01

    The main requirements for radioactive sources applied in the TileCal calibration systems are formulated; technology of the sources production developed in the Laboratory of Nuclear Problems, JINR is described. Design and characteristics of the prototype sources manufactured in Dubna and tested on ATLAS TileCal module 0 are presented

  3. Computational biology of genome expression and regulation--a review of microarray bioinformatics.

    Science.gov (United States)

    Wang, Junbai

    2008-01-01

    Microarray technology is being used widely in various biomedical research areas; the corresponding microarray data analysis is an essential step toward the best utilizing of array technologies. Here we review two components of the microarray data analysis: a low level of microarray data analysis that emphasizes the designing, the quality control, and the preprocessing of microarray experiments, then a high level of microarray data analysis that focuses on the domain-specific microarray applications such as tumor classification, biomarker prediction, analyzing array CGH experiments, and reverse engineering of gene expression networks. Additionally, we will review the recent development of building a predictive model in genome expression and regulation studies. This review may help biologists grasp a basic knowledge of microarray bioinformatics as well as its potential impact on the future evolvement of biomedical research fields.

  4. High-Power-Density, High-Energy-Density Fluorinated Graphene for Primary Lithium Batteries

    Directory of Open Access Journals (Sweden)

    Guiming Zhong

    2018-03-01

    Full Text Available Li/CFx is one of the highest-energy-density primary batteries; however, poor rate capability hinders its practical applications in high-power devices. Here we report a preparation of fluorinated graphene (GFx with superior performance through a direct gas fluorination method. We find that the so-called “semi-ionic” C-F bond content in all C-F bonds presents a more critical impact on rate performance of the GFx in comparison with sp2 C content in the GFx, morphology, structure, and specific surface area of the materials. The rate capability remains excellent before the semi-ionic C-F bond proportion in the GFx decreases. Thus, by optimizing semi-ionic C-F content in our GFx, we obtain the optimal x of 0.8, with which the GF0.8 exhibits a very high energy density of 1,073 Wh kg−1 and an excellent power density of 21,460 W kg−1 at a high current density of 10 A g−1. More importantly, our approach opens a new avenue to obtain fluorinated carbon with high energy densities without compromising high power densities.

  5. High-throughput microarray mapping of cell wall polymers in roots and tubers during the viscosity-reducing process

    DEFF Research Database (Denmark)

    Huang, Yuhong; Willats, William George Tycho; Lange, Lene

    2016-01-01

    the viscosity-reducing process are poorly characterized. Comprehensive microarray polymer profiling, which is a high-throughput microarray, was used for the first time to map changes in the cell wall polymers of sweet potato (Ipomoea batatas), cassava (Manihot esculenta), and Canna edulis Ker. over the entire...... viscosity-reducing process. The results indicated that the composition of cell wall polymers among these three roots and tubers was markedly different. The gel-like matrix and glycoprotein network in the C. edulis Ker. cell wall caused difficulty in viscosity reduction. The obvious viscosity reduction......Viscosity reduction has a great impact on the efficiency of ethanol production when using roots and tubers as feedstock. Plant cell wall-degrading enzymes have been successfully applied to overcome the challenges posed by high viscosity. However, the changes in cell wall polymers during...

  6. The Production and Qualification of Scintillator Tiles for the ATLAS Hadronic Calorimeter

    CERN Document Server

    Abdallah, J; Alexa, C; Alves, R; Amaral, P; Ananiev, A; Anderson, K; Andresen, X; Antonaki, A; Batusov, V; Bednar, P; Bergeaas, E; Biscarat, C; Blanch, O; Blanchot, G; Bohm, C; Boldea, V; Bosi, F; Bosman, M; Bromberg, C; Budagov, Yu; Calvet, D; Cardeira, C; Carli, T; Carvalho, J; Cascella, M; Castillo, M V; Costello, J; Cavalli-Sforza, M; Cavasinni, V; Cerqueira, A S; Clément, C; Cobal, M; Cogswell, F; Constantinescu, S; Costanzo, D; Da Silva, P; David, M; Davidek, T; Dawson, J; De, K; Del Prete, T; Diakov, E; Di Girolamo, B; Dita, S; Dolejsi, J; Dolezal, Z; Dotti, A; Downing, R; Drake, G; Efthymiopoulos, I; Errede, D; Errede, S; Farbin, A; Fassouliotis, D; Feng, E; Fenyuk, A; Ferdi, C; Ferreira, B C; Ferrer, A; Flaminio, V; Flix, J; Francavilla, P; Fullana, E; Garde, V; Gellerstedt, K; Giakoumopoulou, V; Giangiobbe, V; Gildemeister, O; Gilewsky, V; Giokaris, N; Gollub, N; Gomes, A; González, V; Gouveia, J; Grenier, P; Gris, P; Guarino, V; Guicheney, C; Sen-Gupta, A; Hakobyan, H; Haney, M; Hellman, S; Henriques, A; Higón, E; Hill, N; Holmgren, S; Hruska, I; Hurwitz, M; Huston, J; Jen-La Plante, I; Jon-And, K; Junk, T; Karyukhin, A; Khubua, J; Klereborn, J; Konsnantinov, V; Kopikov, S; Korolkov, I; Krivkova, P; Kulchitskii, Yu A; Kurochkin, Yu; Kuzhir, P; Lapin, V; LeCompte, T; Lefèvre, R; Leitner, R; Li, J; Liablin, M; Lokajícek, M; Lomakin, Y; Lourtie, P; Lovas, L; Lupi, A; Maidantchik, C; Maio, A; Maliukov, S; Manousakis, A; Marques, C; Marroquim, F; Martin, F; Mazzoni, E; Merritt, F S; Myagkov, A; Miller, R; Minashvili, I; Miralles, L; Montarou, G; Némécek, S; Nessi, M; Nikitine, I; Nodulman, L; Norniella, O; Onofre, A; Oreglia, M; Palan, B; Pallin, D; Pantea, D; Pereira, A; Pilcher, J E; Pina, J; Pinhão, J; Pod, E; Podlyski, F; Portell, X; Poveda, J; Pribyl, a L; Price, L E; Proudfoot, J; Ramalho, M; Ramstedt, M; Raposeiro, L; Reis, J; Richards, R; Roda, C; Romanov, V; Rosnet, P; Roy, P; Ruiz, A; Rumiantsau, V; Rusakovich, N; Sada Costa, J; Salto, O; Salvachúa, B; Sanchis, E; Sanders, H; Santoni, C; Santos, J; Saraiva, J G; Sarri, F; Says, L P; Schlager, G; Schlereth, J L; Seixas, J M; Selldén, B; Shalanda, N; Shevtsov, P; Shochet, M; Silva, J; Simaitis, V; Simonyan, M; Sisakian, A; Sjölin, J; Solans, C; Solodkov, A; Solovyanov, O; Sosebee, M; Spanó, F; Speckmeyer, P; Stanek, R; Starchenko, E; Starovoitov, P; Suk, M; Sykora, I; Tang, F; Tas, P; Teuscher, R; Tischenko, M; Tokar, S; Topilin, N; Torres, J; Underwood, D; Usai, G; Valero, A; Valkár, S; Valls, J A; Vartapetian, A; Vazeille, F; Vellidis, C; Ventura, F; Vichou, I; Vivarelli, I; Volpi, M; White, A; Zaitsev, A; Zaytsev, Yu; Zenin, A; Zenis, T; Zenonos, Z; Zenz, S; Zilka, B

    2007-01-01

    The production of the scintillator tiles for the ATLAS Tile Calorimeter is presented. In addition to the manufacture and production, the properties of the tiles will be presented including light yield, uniformity and stability.

  7. On the algebraic characterization of aperiodic tilings related to ADE-root systems

    International Nuclear Information System (INIS)

    Kellendonk, J.

    1992-09-01

    The algebraic characterization of sets of locally equivalent aperiodic tilings, being examples of quantum spaces, is conducted for a certain type of tilings in a manner proposed by A. Connes. These 2-dimensional tilings are obtained by application of the strip method to the root lattice of an ADE-Coxeter group. The plane along which the strip is constructed is determined by the canonical Coxeter element leading to the result that a 2- dimensional tiling decomposes into a cartesian product of two 1- dimensional tilings. The properties of the tilings are investigated, including selfsimilarity, and the determination of the relevant algebraic is considered, namely the ordered K 0 -group of an algebra naturaly assigned to the quantum space. The result also yields an application of the 2-dimensional abstract gap labelling theorem. (orig.)

  8. Plant-pathogen interactions: what microarray tells about it?

    Science.gov (United States)

    Lodha, T D; Basak, J

    2012-01-01

    Plant defense responses are mediated by elementary regulatory proteins that affect expression of thousands of genes. Over the last decade, microarray technology has played a key role in deciphering the underlying networks of gene regulation in plants that lead to a wide variety of defence responses. Microarray is an important tool to quantify and profile the expression of thousands of genes simultaneously, with two main aims: (1) gene discovery and (2) global expression profiling. Several microarray technologies are currently in use; most include a glass slide platform with spotted cDNA or oligonucleotides. Till date, microarray technology has been used in the identification of regulatory genes, end-point defence genes, to understand the signal transduction processes underlying disease resistance and its intimate links to other physiological pathways. Microarray technology can be used for in-depth, simultaneous profiling of host/pathogen genes as the disease progresses from infection to resistance/susceptibility at different developmental stages of the host, which can be done in different environments, for clearer understanding of the processes involved. A thorough knowledge of plant disease resistance using successful combination of microarray and other high throughput techniques, as well as biochemical, genetic, and cell biological experiments is needed for practical application to secure and stabilize yield of many crop plants. This review starts with a brief introduction to microarray technology, followed by the basics of plant-pathogen interaction, the use of DNA microarrays over the last decade to unravel the mysteries of plant-pathogen interaction, and ends with the future prospects of this technology.

  9. ATLAS tile calorimeter data quality assessment and performance with calibration, cosmic and first beam data

    International Nuclear Information System (INIS)

    Volpi, Matteo

    2010-01-01

    The commissioning of the barrel hadronic calorimeter (Tile) of the ATLAS detector at the Large Hadron Collider (LHC) has been the focus of an extensive project over the last several years. Work with Tile has resulted in a fully operational detector before the first LHC beam test on 10 September 2008. A set of tools has been developed spanning from the hardware and software systems of the detector and online monitoring to the offline reconstruction. This set of tools constitutes the final Tile data quality system and is highly integrated with all ATLAS online and offline frameworks. A review of the final data quality system of the Tile hadronic calorimeter will be presented together with selected results on hardware reliability. This will be followed by the detector performance checks performed on cosmic data and on the first LHC beam data taken on 10 September 2008.

  10. Kernel Based Nonlinear Dimensionality Reduction and Classification for Genomic Microarray

    Directory of Open Access Journals (Sweden)

    Lan Shu

    2008-07-01

    Full Text Available Genomic microarrays are powerful research tools in bioinformatics and modern medicinal research because they enable massively-parallel assays and simultaneous monitoring of thousands of gene expression of biological samples. However, a simple microarray experiment often leads to very high-dimensional data and a huge amount of information, the vast amount of data challenges researchers into extracting the important features and reducing the high dimensionality. In this paper, a nonlinear dimensionality reduction kernel method based locally linear embedding(LLE is proposed, and fuzzy K-nearest neighbors algorithm which denoises datasets will be introduced as a replacement to the classical LLE’s KNN algorithm. In addition, kernel method based support vector machine (SVM will be used to classify genomic microarray data sets in this paper. We demonstrate the application of the techniques to two published DNA microarray data sets. The experimental results confirm the superiority and high success rates of the presented method.

  11. Stoneware tile manufacturing using rice straw ash as feldspar replacement

    International Nuclear Information System (INIS)

    Alvaro Guzman, A.; John Torres, L.; Martha Cedeno, V.; Silvio Delvasto, A.; Vicente Amigo, B.; Enrique Sanchez, V.

    2013-01-01

    In this research are presented the results of using rice straw ash (RSA) in low proportions as substitute of feldspar for manufacturing stoneware tiles. Specimens of semidry triaxial mixtures, where feldspar was substituted for different percentages (25 % and 50 %) of RSA, were prepared by uniaxial pressing, followed by drying and sintering. Physical and mechanical properties of sintered bodies were evaluated. Porcelain stoneware tile specimens C0 and CF25 reached bending strength and water absorption values were in accordance with standard ISO 13006 (Annex G, BIa) ( ≥ 35 MPa and ≤ 0.5 %, respectively). However, in porcelain stoneware tile specimens CF50 due to bloating phenomenon was not possible obtain commercial tiles in accordance with standard ISO 13006. By using Scanning Electron Microscopy (SEM) needles of primary and secondary mullite were identified in a vitreous phase; and by using X-Ray Diffraction (XRD) mullite and quartz phases were identified. It was concluded that feldspar can be substituted positively by RSA in stoneware tile pastes. (Author)

  12. Valorization of rice straw waste: production of porcelain tiles

    Directory of Open Access Journals (Sweden)

    Álvaro Guzmán A

    2015-12-01

    Full Text Available Abstract The rice industry generates huge amounts of rice straw ashes (RSA. This paper presents the results of an experimental research work about the incorporation of RSA waste as a new alternative raw material for production of porcelain tiles. The RSA replaces, partially or completely, the non-plastic raw materials (quartz (feldspathic sand in this research and feldspar, that together with the clays, constitute the major constituents of formulations of porcelain tiles. A standard industrial composition (0% RSA and two more compositions in which feldspar and feldspathic sand were replaced with two percentages of RSA (12.5% RSA and 60% RSA were formulated, keeping the clay content constant. The mixtures were processed, reproducing industrial porcelain tile manufacturing conditions by the dry route and fired at peak temperatures varying from 1140-1260 ºC. The results showed that additions of 12.5% RSA in replacement of feldspar and feldspathic sand allowed producing porcelain tiles that did not display marked changes in processing behaviour, in addition to obtain a microstructure and the typical mineralogical phases of porcelain tile. Thus, an alternative use of an agricultural waste material is proposed, which can be translated into economic and environmental benefits.

  13. Extending the scope of diagnostic chromosome analysis: detection of single gene defects using high-resolution SNP microarrays.

    Science.gov (United States)

    Bruno, Damien L; Stark, Zornitza; Amor, David J; Burgess, Trent; Butler, Kathy; Corrie, Sylvea; Francis, David; Ganesamoorthy, Devika; Hills, Louise; James, Paul A; O'Rielly, Darren; Oertel, Ralph; Savarirayan, Ravi; Prabhakara, Krishnamurthy; Salce, Nicholas; Slater, Howard R

    2011-12-01

    Microarray analysis has provided significant advances in the diagnosis of conditions resulting from submicroscopic chromosome abnormalities. It has been recommended that array testing should be a "first tier" test in the evaluation of individuals with intellectual disability, developmental delay, congenital anomalies, and autism. The availability of arrays with increasingly high probe coverage and resolution has increased the detection of decreasingly small copy number changes (CNCs) down to the intragenic or even exon level. Importantly, arrays that genotype SNPs also detect extended regions of homozygosity. We describe 14 examples of single gene disorders caused by intragenic changes from a consecutive set of 6,500 tests using high-resolution SNP microarrays. These cases illustrate the increased scope of cytogenetic testing beyond dominant chromosome rearrangements that typically contain many genes. Nine of the cases confirmed the clinical diagnosis, that is, followed a "phenotype to genotype" approach. Five were diagnosed by the laboratory analysis in the absence of a specific clinical diagnosis, that is, followed a "genotype to phenotype" approach. Two were clinically significant, incidental findings. The importance of astute clinical assessment and laboratory-clinician consultation is emphasized to optimize the value of microarrays in the diagnosis of disorders caused by single gene copy number and sequence mutations. © 2011 Wiley-Liss, Inc.

  14. Automatic generation of aesthetic patterns on fractal tilings by means of dynamical systems

    International Nuclear Information System (INIS)

    Chung, K.W.; Ma, H.M.

    2005-01-01

    A fractal tiling or f-tiling is a tiling which possesses self-similarity and the boundary of which is a fractal. In this paper, we investigate the classification of fractal tilings with kite-shaped and dart-shaped prototiles from which three new f-tilings are found. Invariant mappings are constructed for the creation of aesthetic patterns on such tilings. A modified convergence time scheme is described, which reflects the rate of convergence of various orbits and at the same time, enhances the artistic appeal of a generated image. A scheme based on the frequency of visit at a pixel is used to generate chaotic attractors

  15. A probabilistic framework for microarray data analysis: fundamental probability models and statistical inference.

    Science.gov (United States)

    Ogunnaike, Babatunde A; Gelmi, Claudio A; Edwards, Jeremy S

    2010-05-21

    Gene expression studies generate large quantities of data with the defining characteristic that the number of genes (whose expression profiles are to be determined) exceed the number of available replicates by several orders of magnitude. Standard spot-by-spot analysis still seeks to extract useful information for each gene on the basis of the number of available replicates, and thus plays to the weakness of microarrays. On the other hand, because of the data volume, treating the entire data set as an ensemble, and developing theoretical distributions for these ensembles provides a framework that plays instead to the strength of microarrays. We present theoretical results that under reasonable assumptions, the distribution of microarray intensities follows the Gamma model, with the biological interpretations of the model parameters emerging naturally. We subsequently establish that for each microarray data set, the fractional intensities can be represented as a mixture of Beta densities, and develop a procedure for using these results to draw statistical inference regarding differential gene expression. We illustrate the results with experimental data from gene expression studies on Deinococcus radiodurans following DNA damage using cDNA microarrays. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

  16. Generalization of DNA microarray dispersion properties: microarray equivalent of t-distribution

    DEFF Research Database (Denmark)

    Novak, Jaroslav P; Kim, Seon-Young; Xu, Jun

    2006-01-01

    BACKGROUND: DNA microarrays are a powerful technology that can provide a wealth of gene expression data for disease studies, drug development, and a wide scope of other investigations. Because of the large volume and inherent variability of DNA microarray data, many new statistical methods have...

  17. Design, construction and validation of a Plasmodium vivax microarray for the transcriptome profiling of clinical isolates

    KAUST Repository

    Boopathi, Pon Arunachalam

    2016-10-09

    High density oligonucleotide microarrays have been used on Plasmodium vivax field isolates to estimate whole genome expression. However, no microarray platform has been experimentally optimized for studying the transcriptome of field isolates. In the present study, we adopted both bioinformatics and experimental testing approaches to select best optimized probes suitable for detecting parasite transcripts from field samples and included them in designing a custom 15K P. vivax microarray. This microarray has long oligonucleotide probes (60 mer) that were in-situ synthesized onto glass slides using Agilent SurePrint technology and has been developed into an 8X15K format (8 identical arrays on a single slide). Probes in this array were experimentally validated and represents 4180 P. vivax genes in sense orientation, of which 1219 genes have also probes in antisense orientation. Validation of the 15K array by using field samples (n =14) has shown 99% of parasite transcript detection from any of the samples. Correlation analysis between duplicate probes (n = 85) present in the arrays showed perfect correlation (r(2) = 0.98) indicating the reproducibility. Multiple probes representing the same gene exhibited similar kind of expression pattern across the samples (positive correlation, r >= 0.6). Comparison of hybridization data with the previous studies and quantitative real-time PCR experiments were performed to highlight the microarray validation procedure. This array is unique in its design, and results indicate that the array is sensitive and reproducible. Hence, this microarray could be a valuable functional genomics tool to generate reliable expression data from P. vivax field isolates. (C) 2016 Published by Elsevier B.V.

  18. Design, construction and validation of a Plasmodium vivax microarray for the transcriptome profiling of clinical isolates

    KAUST Repository

    Boopathi, Pon Arunachalam; Subudhi, Amit; Middha, Sheetal; Acharya, Jyoti; Mugasimangalam, Raja Chinnadurai; Kochar, Sanjay Kumar; Kochar, Dhanpat Kumar; Das, Ashis

    2016-01-01

    High density oligonucleotide microarrays have been used on Plasmodium vivax field isolates to estimate whole genome expression. However, no microarray platform has been experimentally optimized for studying the transcriptome of field isolates. In the present study, we adopted both bioinformatics and experimental testing approaches to select best optimized probes suitable for detecting parasite transcripts from field samples and included them in designing a custom 15K P. vivax microarray. This microarray has long oligonucleotide probes (60 mer) that were in-situ synthesized onto glass slides using Agilent SurePrint technology and has been developed into an 8X15K format (8 identical arrays on a single slide). Probes in this array were experimentally validated and represents 4180 P. vivax genes in sense orientation, of which 1219 genes have also probes in antisense orientation. Validation of the 15K array by using field samples (n =14) has shown 99% of parasite transcript detection from any of the samples. Correlation analysis between duplicate probes (n = 85) present in the arrays showed perfect correlation (r(2) = 0.98) indicating the reproducibility. Multiple probes representing the same gene exhibited similar kind of expression pattern across the samples (positive correlation, r >= 0.6). Comparison of hybridization data with the previous studies and quantitative real-time PCR experiments were performed to highlight the microarray validation procedure. This array is unique in its design, and results indicate that the array is sensitive and reproducible. Hence, this microarray could be a valuable functional genomics tool to generate reliable expression data from P. vivax field isolates. (C) 2016 Published by Elsevier B.V.

  19. ATLAS TileCal submodule B-field measurement

    International Nuclear Information System (INIS)

    Budagov, Yu.A.; Fedorenko, S.B.; Kalinichenko, V.V.; Lomakin, Yu.F.; Vorozhtsov, S.B.; Nessi, M.

    1997-01-01

    The work was done to cross check of the previous measurement done at CERN and to simulate the magnetic structure in the vicinity of the symmetry plane of the TileCal. To perform magnetic measurements for submodule the magnet E2 was chosen. The magnetometer used in the magnetic test of the submodule consists of Hall current supply and Hall voltage measuring device. The indium antimonide Hall probe used in this measurement is a model PKhE 606. Experimental set-up provides a true measurement accuracy of order ± 1%. External magnetic field measurements were conducted at the outer surface of the submodule. Two levels of the external field were applied: 108 Gs and 400 Gs. The result of this measurement in general confirms the data, obtained at CERN, but the shielding capability of the submodule under consideration was ∼ 20% higher than there. The field at the tile location is < 150 Gs up to the external field level 500 Gs and the tile field grows much less than the external field level in this range. The data obtained in this measurement could be used as a benchmark when producing a computer model of the TileCal magnetic field distribution

  20. The use of microarrays in microbial ecology

    Energy Technology Data Exchange (ETDEWEB)

    Andersen, G.L.; He, Z.; DeSantis, T.Z.; Brodie, E.L.; Zhou, J.

    2009-09-15

    Microarrays have proven to be a useful and high-throughput method to provide targeted DNA sequence information for up to many thousands of specific genetic regions in a single test. A microarray consists of multiple DNA oligonucleotide probes that, under high stringency conditions, hybridize only to specific complementary nucleic acid sequences (targets). A fluorescent signal indicates the presence and, in many cases, the abundance of genetic regions of interest. In this chapter we will look at how microarrays are used in microbial ecology, especially with the recent increase in microbial community DNA sequence data. Of particular interest to microbial ecologists, phylogenetic microarrays are used for the analysis of phylotypes in a community and functional gene arrays are used for the analysis of functional genes, and, by inference, phylotypes in environmental samples. A phylogenetic microarray that has been developed by the Andersen laboratory, the PhyloChip, will be discussed as an example of a microarray that targets the known diversity within the 16S rRNA gene to determine microbial community composition. Using multiple, confirmatory probes to increase the confidence of detection and a mismatch probe for every perfect match probe to minimize the effect of cross-hybridization by non-target regions, the PhyloChip is able to simultaneously identify any of thousands of taxa present in an environmental sample. The PhyloChip is shown to reveal greater diversity within a community than rRNA gene sequencing due to the placement of the entire gene product on the microarray compared with the analysis of up to thousands of individual molecules by traditional sequencing methods. A functional gene array that has been developed by the Zhou laboratory, the GeoChip, will be discussed as an example of a microarray that dynamically identifies functional activities of multiple members within a community. The recent version of GeoChip contains more than 24,000 50mer

  1. ATLAS TileCal LVPS Upgrade Hardware and Testing

    CERN Document Server

    Hibbard, Michael James; The ATLAS collaboration; Hadavand, Haleh Khani

    2018-01-01

    UTA (University of Texas at Arlington) has been designing and producing new testing stations to ensure the reliability and quality of new TileLVPS (Low Voltage Power Supplies), also produced at UTA, which will power the next generation of upgraded hardware in the TileCal (Tile Calorimeter) system of ATLAS at CERN. UTA has produced two new types of testing stations, which build upon the previous generation of testing stations used in the initial production of the TileCal system. The first station is the Initial Test Station, and quickly quantifies a multitude of performance metrics of a LVPS. We have developed our own PC based program which graphically display and records onto file these metrics. A few notable metrics we are measuring are the system clock and its jitter. Excessive clock jitter in LVPS can affect system stability and derate the working range of the system duty cycle. This station also verifies protection circuitry of LVPS, which protects it from over temperature, current and voltage. The second...

  2. The ATLAS Tile Calorimeter Performance at LHC

    CERN Document Server

    Molander, S; The ATLAS collaboration

    2013-01-01

    The Tile Calorimeter (TileCal) is the central section of the hadronic calorimeter of the ATLAS experiment at LHC. The TileCal pays a major role in detecting hadrons, jets, hadronic decays of tau leptons and measuring the missing transverse energy. Due to the very good signal to noise ratio it assists the muon spectrometer in the identification and reconstruction of muons, which are also a tool for the in situ energy scale validation. The results presented here stem from the data collection in dedicated calibration runs, in cosmic rays data-taking and in LHC collisions along 3 years of operation. The uniformity, stability and precision of the energy scale, the time measurement capabilities and the robustness of the performance against pile-up are exposed through the usage of hadronic and muon final states and confirm the design expectations.

  3. Flat tile armour cooled by hypervapotron tube: a possible technology for ITER

    International Nuclear Information System (INIS)

    Schlosser, J.; Escourbiac, F.; Bayetti, P.; Missirlian, M.; Mitteau, R.; Schedler, B.; Bobin-Vastra, I.

    2003-01-01

    Carbon fibre composite (CFC) flat tile armours for actively cooled plasma facing components (PFC's) are an important challenge for controlled fusion machine. Flat tile concepts, water cooled by tubes, were studied, developed, tested and finally experienced with success in Tore Supra. The components were designed for 10 MW/m 2 and mock-ups were successfully fatigue tested at 15 MW/m 2 , 1000 cycles. For ITER, a tube-in-tile concept was developed and mock-ups sustained up to 25 MW/m 2 for 1000 cycles without failure. Recently flat tile armored mock-ups cooled by Hypervapotron tube successfully sustained a cascade failure test under a mean heat flux of 10 MW/m 2 but with a doubling of the heat flux on some tiles to simulate missing tiles (500 cycles). This encouraging results lead to reconsider the limits for flat tile concept when cooled by Hypervapotron tube. New tests are now scheduled to investigate these limits notably in regards to the ITER requirements. The concept could also be experimented in Tore Supra by installing a new limiter into the machine. (authors)

  4. Detecting Subsurface Agricultural Tile Drainage using GIS and Remote Sensing Technique

    Science.gov (United States)

    Budhathoki, M.; Gokkaya, K.; Tank, J. L.; Christopher, S. F.; Hanrahan, B.

    2015-12-01

    Subsurface tile drainage is a common practice in many of the row crop dominated agricultural lands in the Upper Midwest, which increases yield by making the soil more productive. It is reported that nearly half of all cropland in Indiana benefits from some sort of artificial drainage. However, subsurface tile has a significant negative impact on surface water quality by providing a fast means of transport for nutrients from fertilizers. Therefore, generating spatial data of tile drainage in the field is important and useful for agricultural landscape and hydrological studies. Subsurface tile drains in Indiana's croplands are not widely mapped. In this study, we will delineate subsurface tile drainage in agricultural land in Shatto Ditch watershed, located in Kosciusko County, Indiana. We will use geo-spatial methodology, which was purposed by earlier researchers to detect tile drainage. We will use aerial color-infrared and satellite imagery along with Light Detection and Ranging (LiDAR) data. In order to map tile lines with possible accuracy, we will use GIS-based analysis in combination with remotely sensed data. This research will be comprised of three stages: 1) masking out the potential drainage area using a decision tree rule based on land cover information, soil drainage category, surface slope, and satellite image differencing technique, 2) delineate tile lines using image processing techniques, and 3) check the accuracy of mapped tile lines with ground control points. To our knowledge, this study will be the first to check the accuracy of mapping with ground truth data. Based on the accuracy of results, we will extend the methodology to greater spatial scales. The results are expected to contribute to better characterizing and controlling water pollution sources in Indiana, which is a major environmental problem.

  5. Consolidation and upgrades of the ATLAS Tile Calorimeter

    CERN Document Server

    Cerda Alberich, Leonor; The ATLAS collaboration

    2017-01-01

    This is a presentation of the status of the ATLAS Tile Calorimeter during the EYETS and before starting 2017 data-taking. Updates on the upgrade of the readout system such as doubling the RODs output links and the number of processing units (PUs) are being worked on at the moment as well as items concerning the maintenance of the detector which involves issues such as cooling leaks and consolidation of the Low Voltage Power Supplies, which are being replaced if necessary. Other updates include works on the Tile calibration, in particular on the Cesium system. In addition, the whole Tile readout electronics is being replaced for Phase-II and it is being tested in Test Beam area.

  6. Surface runoff and tile drainage transport of phosphorus in the midwestern United States.

    Science.gov (United States)

    Smith, Douglas R; King, Kevin W; Johnson, Laura; Francesconi, Wendy; Richards, Pete; Baker, Dave; Sharpley, Andrew N

    2015-03-01

    The midwestern United States offers some of the most productive agricultural soils in the world. Given the cool humid climate, much of the region would not be able to support agriculture without subsurface (tile) drainage because high water tables may damage crops and prevent machinery usage in fields at critical times. Although drainage is designed to remove excess soil water as quickly as possible, it can also rapidly transport agrochemicals, including phosphorus (P). This paper illustrates the potential importance of tile drainage for P transport throughout the midwestern United States. Surface runoff and tile drainage from fields in the St. Joseph River Watershed in northeastern Indiana have been monitored since 2008. Although the traditional concept of tile drainage has been that it slowly removes soil matrix flow, peak tile discharge occurred at the same time as peak surface runoff, which demonstrates a strong surface connection through macropore flow. On our research fields, 49% of soluble P and 48% of total P losses occurred via tile discharge. Edge-of-field soluble P and total P areal loads often exceeded watershed-scale areal loadings from the Maumee River, the primary source of nutrients to the western basin of Lake Erie, where algal blooms have been a pervasive problem for the last 10 yr. As farmers, researchers, and policymakers search for treatments to reduce P loading to surface waters, the present work demonstrates that treating only surface runoff may not be sufficient to reach the goal of 41% reduction in P loading for the Lake Erie Basin. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

  7. Milestone 5 test report. Task 5, subtask 5.2: Tile to foam strength tests

    Science.gov (United States)

    Greenberg, H. S.

    1994-01-01

    This report summarizes work that has been performed to date on the strength of a cryotank insulation system using Rohacell foam and TUFI-coated AETB-12 ceramic tiles directly bonded to a simulated graphite-epoxy tank wall. Testing utilized a custom specimen design which consists of a long tensile specimen with eccentric loading to induce curvature similar to the curvature expected due to 'pillowing' of the tank when pressurized. A finite element model was constructed to predict the specific element strains in the test article, and to assist with design of the test specimen to meet the specific goals of curvature and laminate strain. The results indicate that the heat treated 3.25-pcf density Rohacell foam does not provide sufficient strength for the induced stresses due to curvature and stress concentration at the RTV bondline to the TUFI tile. The test was repeated using higher density non-heat treated Rohacell foam (6.9 pcf) without foam failure. The finite element model was shown to predict specimen behavior, and validation of the model was successful. It is pertinent to mention that the analyses described herein accurately predicted the failure of the heat treated foams and based on this analysis method it is expected that the untreated 3.25 pcf Rohacell foam will be successful.

  8. A study of metaheuristic algorithms for high dimensional feature selection on microarray data

    Science.gov (United States)

    Dankolo, Muhammad Nasiru; Radzi, Nor Haizan Mohamed; Sallehuddin, Roselina; Mustaffa, Noorfa Haszlinna

    2017-11-01

    Microarray systems enable experts to examine gene profile at molecular level using machine learning algorithms. It increases the potentials of classification and diagnosis of many diseases at gene expression level. Though, numerous difficulties may affect the efficiency of machine learning algorithms which includes vast number of genes features comprised in the original data. Many of these features may be unrelated to the intended analysis. Therefore, feature selection is necessary to be performed in the data pre-processing. Many feature selection algorithms are developed and applied on microarray which including the metaheuristic optimization algorithms. This paper discusses the application of the metaheuristics algorithms for feature selection in microarray dataset. This study reveals that, the algorithms have yield an interesting result with limited resources thereby saving computational expenses of machine learning algorithms.

  9. Diatoms as an indicator for tile drainage flow in a German lowland catchment.

    Science.gov (United States)

    Wu, Naicheng; Faber, Claas; Ulrich, Uta; Fohrer, Nicola

    2018-01-01

    The separation of runoff components within a model simulation is of great importance for a successful implementation of management measures. Diatoms could be a promising indicator for tile drainage flow due to their diverse preferences to different aquatic habitats. In this study, we collected diatom samples of 9 sites (4 tile drainage, TD, and 5 river sites, Ri) in a German lowland catchment at a weekly or biweekly time step from March to July 2013 with the aim of testing the suitability of diatoms for tile drainage flow, which is typical for lowland catchment. Planothidium lanceolatum , Ulnaria biceps , and Navicula gregaria dominated in TD sites with relative abundances of 22.2, 21.5, and 10.9%, respectively. For Ri sites, the most abundant species was Navicula lanceolata (20.5%), followed by Ulnaria biceps (12.9%), Cyclotella meneghiniana (9.5%), and Planothidium lanceolatum (9.3%). Compared with Ri sites, TD had a lower diatom density, biomass, species richness, and percentage of Aquatic/Riparian diatoms (AqRi%). However, the proportion of Riparian diatoms (RiZo%) increased at TD. Indicator value method (IndVal) revealed that the two groups (Ri and TD) were characterized by different indicator species. Fifteen taxa, including Cocconeis placentula , Cyclotella meneghiniana , N. lanceolata , and U. biceps , were significant indicators for Ri sites. Planothidium lanceolatum , Achnanthidium minutissimum , and Navicula gregaria were significant indicators for TD sites. A pronounced variation was found in the species lists of diatom community between Ri and TD water body types associated with different indicator species. With respect to hydrograph separation, these findings highlight the suitability of diatoms as an indicator for tile drainage flow. However, spatial and temporal variations of diatoms should be considered in future surveys.

  10. Moving Toward Integrating Gene Expression Profiling into High-throughput Testing:A Gene Expression Biomarker Accurately Predicts Estrogen Receptor α Modulation in a Microarray Compendium

    Science.gov (United States)

    Microarray profiling of chemical-induced effects is being increasingly used in medium and high-throughput formats. In this study, we describe computational methods to identify molecular targets from whole-genome microarray data using as an example the estrogen receptor α (ERα), ...

  11. Fibre optic microarrays.

    Science.gov (United States)

    Walt, David R

    2010-01-01

    This tutorial review describes how fibre optic microarrays can be used to create a variety of sensing and measurement systems. This review covers the basics of optical fibres and arrays, the different microarray architectures, and describes a multitude of applications. Such arrays enable multiplexed sensing for a variety of analytes including nucleic acids, vapours, and biomolecules. Polymer-coated fibre arrays can be used for measuring microscopic chemical phenomena, such as corrosion and localized release of biochemicals from cells. In addition, these microarrays can serve as a substrate for fundamental studies of single molecules and single cells. The review covers topics of interest to chemists, biologists, materials scientists, and engineers.

  12. A High-Throughput, Precipitating Colorimetric Sandwich ELISA Microarray for Shiga Toxins

    Directory of Open Access Journals (Sweden)

    Andrew Gehring

    2014-06-01

    Full Text Available Shiga toxins 1 and 2 (Stx1 and Stx2 from Shiga toxin-producing E. coli (STEC bacteria were simultaneously detected with a newly developed, high-throughput antibody microarray platform. The proteinaceous toxins were immobilized and sandwiched between biorecognition elements (monoclonal antibodies and pooled horseradish peroxidase (HRP-conjugated monoclonal antibodies. Following the reaction of HRP with the precipitating chromogenic substrate (metal enhanced 3,3-diaminobenzidine tetrahydrochloride or DAB, the formation of a colored product was quantitatively measured with an inexpensive flatbed page scanner. The colorimetric ELISA microarray was demonstrated to detect Stx1 and Stx2 at levels as low as ~4.5 ng/mL within ~2 h of total assay time with a narrow linear dynamic range of ~1–2 orders of magnitude and saturation levels well above background. Stx1 and/or Stx2 produced by various strains of STEC were also detected following the treatment of cultured cells with mitomycin C (a toxin-inducing antibiotic and/or B-PER (a cell-disrupting, protein extraction reagent. Semi-quantitative detection of Shiga toxins was demonstrated to be sporadic among various STEC strains following incubation with mitomycin C; however, further reaction with B-PER generally resulted in the detection of or increased detection of Stx1, relative to Stx2, produced by STECs inoculated into either axenic broth culture or culture broth containing ground beef.

  13. Foam-on-Tile Damage Model

    Science.gov (United States)

    Koharchik, Michael; Murphy, Lindsay; Parker, Paul

    2012-01-01

    An impact model was developed to predict how three specific foam types would damage the Space Shuttle Orbiter insulating tiles. The inputs needed for the model are the foam type, the foam mass, the foam impact velocity, the foam impact incident angle, the type being impacted, and whether the tile is new or aged (has flown at least one mission). The model will determine if the foam impact will cause damage to the tile. If it can cause damage, the model will output the damage cavity dimensions (length, depth, entry angle, exit angle, and sidewall angles). It makes the calculations as soon as the inputs are entered (less than 1 second). The model allows for the rapid calculation of numerous scenarios in a short time. The model was developed from engineering principles coupled with significant impact testing (over 800 foam impact tests). This model is applicable to masses ranging from 0.0002 up to 0.4 pound (0.09 up to 181 g). A prior tool performed a similar function, but was limited to the assessment of a small range of masses and did not have the large test database for verification. In addition, the prior model did not provide outputs of the cavity damage length, entry angle, exit angle, or sidewall angles.

  14. Test of 1D carbon-carbon composite prototype tiles for the SPIDER diagnostic calorimeter

    Science.gov (United States)

    Serianni, G.; Pimazzoni, A.; Canton, A.; Palma, M. Dalla; Delogu, R.; Fasolo, D.; Franchin, L.; Pasqualotto, R.; Tollin, M.

    2017-08-01

    Additional heating will be provided to the thermonuclear fusion experiment ITER by injection of neutral beams from accelerated negative ions. In the SPIDER test facility, under construction at Consorzio RFX in Padova (Italy), the production of negative ions will be studied and optimised. To this purpose the STRIKE (Short-Time Retractable Instrumented Kalorimeter Experiment) diagnostic will be used to characterise the SPIDER beam during short operation (several seconds) and to verify if the beam meets the ITER requirement regarding the maximum allowed beam non-uniformity (below ±10%). The most important measurements performed by STRIKE are beam uniformity, beamlet divergence and stripping losses. The major components of STRIKE are 16 1D-CFC (Carbon matrix-Carbon Fibre reinforced Composite) tiles, observed at the rear side by a thermal camera. The requirements of the 1D CFC material include a large thermal conductivity along the tile thickness (at least 10 times larger than in the other directions); low specific heat and density; uniform parameters over the tile surface; capability to withstand localised heat loads resulting in steep temperature gradients. So 1D CFC is a very anisotropic and delicate material, not commercially available, and prototypes are being specifically realised. This contribution gives an overview of the tests performed on the CFC prototype tiles, aimed at verifying their thermal behaviour. The spatial uniformity of the parameters and the ratio between the thermal conductivities are assessed by means of a power laser at Consorzio RFX. Dedicated linear and non-linear simulations are carried out to interpret the experiments and to estimate the thermal conductivities; these simulations are described and a comparison of the experimental data with the simulation results is presented.

  15. Quasiperiodic canonical-cell tiling with pseudo icosahedral symmetry

    Science.gov (United States)

    Fujita, Nobuhisa

    2017-10-01

    Icosahedral quasicrystals and their approximants are generally described as packing of icosahedral clusters. Experimental studies show that clusters in various approximants are orderly arranged, such that their centers are located at the nodes (or vertices) of a periodic tiling composed of four basic polyhedra called the canonical cells. This so called canonical-cell geometry is likely to serve as a common framework for modeling how clusters are arranged in approximants, while its applicability seems to extend naturally to icosahedral quasicrystals. To date, however, it has not been proved yet if the canonical cells can tile the space quasiperiodically, though we usually believe that clusters in icosahedral quasicrystals are arranged such that quasiperiodic long-range order as well as icosahedral point symmetry is maintained. In this paper, we report for the first time an iterative geometrical transformation of the canonical cells defining a so-called substitution rule, which we can use to generate a class of quasiperiodic canonical-cell tilings. Every single step of the transformation proceeds as follows: each cell is first enlarged by a magnification ratio of τ3 (τ = golden mean) and then subdivided into cells of the original size. Here, cells with an identical shape can be subdivided in several distinct manners depending on how their adjacent neighbors are arranged, and sixteen types of cells are identified in terms of unique subdivision. This class of quasiperiodic canonical-cell tilings presents the first realization of three-dimensional quasiperiodic tilings with fractal atomic surfaces. There are four distinct atomic surfaces associated with four sub-modules of the primitive icosahedral module, where a representative of the four submodules corresponds to the Σ = 4 coincidence site module of the icosahedral module. It follows that the present quasiperiodic tilings involve a kind of superlattice ordering that manifests itself in satellite peaks in the

  16. Application of the gamma-ray attenuation on the study of Amianthus-Cement tile with different ages

    International Nuclear Information System (INIS)

    Marques, Leonardo C.; Simeao, David da Silva; Oliveira, Ricardo Mendes de; Rocha, Wilson Roberto Dejato da; Costa, Elizabeth Cristina Soares da; Portezan Filho, Otavio; Coimbra, Melayne Martins

    2005-01-01

    In the civil construction, concrete of different resistances are prepared to assist to the objectives of the projects. Concrete samples, prepared in laboratory,can be used in the measurements of the density profiles along the sample, as well as to accompany the space and temporary evolution of the humidity in the process of water infiltration. Other material quite used in the civil construction it is the amianthus-cement tiles, that has good resistance to the deformation. This work intends to evaluate the homogeneity of the amianthus-cement tiles through the gamma-ray attenuation technique, in order to verify the possible existence of fissures or defects in the material, due to the aging and the bad weather. The first tile used was produced in 2002, te second one in 1991 and the third in 1978. Its dimensions were: 130x50x0,4 cm. To manipulate the tiles with easiness, these were divided in samples with the following dimensions: 12x8x0,4 cm. For each sample the linear attenuation coefficient was measured for a horizontal line, totalizing 14 points with an interval of 0,5 cm among the points. The measurement table used has a Na (Tl) scintillation detector of 2 x 2 , with circular collimator of 2 mm (for source) and of 5 mm (for the detector) and a radioactive source of 241 Am (59,6 keV, 100 mCi). With the measured values of the linear attenuation coefficient as a function of the position in the sample, we can build the curves of the linear attenuation coefficient versus position, which represent the homogeneity profile of the sample . The graphs of the linear attenuation coefficient versus position will be presented for the measured tiles as well as the statistical analysis of the results. (author)

  17. Harshlight: a "corrective make-up" program for microarray chips

    Directory of Open Access Journals (Sweden)

    Wittkowski Knut M

    2005-12-01

    Full Text Available Abstract Background Microscopists are familiar with many blemishes that fluorescence images can have due to dust and debris, glass flaws, uneven distribution of fluids or surface coatings, etc. Microarray scans do show similar artifacts, which might affect subsequent analysis. Although all but the starkest blemishes are hard to find by the unaided eye, particularly in high-density oligonucleotide arrays (HDONAs, few tools are available to help with the detection of those defects. Results We develop a novel tool, Harshlight, for the automatic detection and masking of blemishes in HDONA microarray chips. Harshlight uses a combination of statistic and image processing methods to identify three different types of defects: localized blemishes affecting a few probes, diffuse defects affecting larger areas, and extended defects which may invalidate an entire chip. Conclusion We demonstrate the use of Harshlight can materially improve analysis of HDONA chips, especially for experiments with subtle changes between samples. For the widely used MAS5 algorithm, we show that compact blemishes cause an average of 8 gene expression values per chip to change by more than 50%, two of them by more than twofold; our masking algorithm restores about two thirds of this damage. Large-scale artifacts are successfully detected and eliminated.

  18. Conceptual design for a bulk tungsten divertor tile in JET

    International Nuclear Information System (INIS)

    Mertens, Ph.; Hirai, T.; Linke, J.; Neubauer, O.; Pintsuk, G.; Philipps, V.; Sadakov, S.; Samm, U.; Schweer, B.

    2007-01-01

    The ITER-like Wall project (ILW) for JET aims at providing the plasma chamber of the tokamak with an environment of mixed materials which will be relevant for the actual first wall construction on ITER. Tungsten plays a key role in the divertor cladding. For the central tile, also called LB-SRP for 'load-bearing septum replacement plate', bulk tungsten is envisaged in order to cope with the high heat loads expected (up to 10 MW/m 2 for 10 s). The outer strike-point in the divertor will be positioned on this tile for the most relevant configurations. Forschungszentrum Juelich (FZJ) has developed a conceptual design based on an assembly of tungsten blades or lamellae. An appropriate interface with the base carrier of JET, on which modules of two tiles are positioned and fixed by remote handling procedures, is a substantial part of the integral design. Important issues are the electromagnetic forces and expected temperature distributions. Material choices combine tungsten, TZM TM , Inconel and ceramic parts. The completed design has been finalised in a proposal to the ILW project, with utmost ITER-relevance

  19. Terahertz NDE application for corrosion detection and evaluation under Shuttle tiles

    Science.gov (United States)

    Anastasi, Robert F.; Madaras, Eric I.; Seebo, Jeffrey P.; Smith, Stephen W.; Lomness, Janice K.; Hintze, Paul E.; Kammerer, Catherine C.; Winfree, William P.; Russell, Richard W.

    2007-04-01

    Pulsed Terahertz NDE is being examined as a method to inspect for possible corrosion under Space Shuttle Tiles. Other methods such as ultrasonics, infrared, eddy current and microwave technologies have demonstrable shortcomings for tile NDE. This work applies Terahertz NDE, in the frequency range between 50 GHz and 1 THz, for the inspection of manufactured corrosion samples. The samples consist of induced corrosion spots that range in diameter (2.54 to 15.2 mm) and depth (0.036 to 0.787 mm) in an aluminum substrate material covered with tiles. Results of these measurements are presented for known corrosion flaws both covered and uncovered and for blind tests with unknown corrosion flaws covered with attached tiles. The Terahertz NDE system is shown to detect all artificially manufactured corrosion regions under a Shuttle tile with a depth greater than 0.13 mm.

  20. Design and evaluation of Actichip, a thematic microarray for the study of the actin cytoskeleton

    Science.gov (United States)

    Muller, Jean; Mehlen, André; Vetter, Guillaume; Yatskou, Mikalai; Muller, Arnaud; Chalmel, Frédéric; Poch, Olivier; Friederich, Evelyne; Vallar, Laurent

    2007-01-01

    Actichip is a powerful alternative to commercial high density microarrays for cytoskeleton gene profiling in normal or pathological samples. Actichip is available upon request. PMID:17727702

  1. Implementation of mutual information and bayes theorem for classification microarray data

    Science.gov (United States)

    Dwifebri Purbolaksono, Mahendra; Widiastuti, Kurnia C.; Syahrul Mubarok, Mohamad; Adiwijaya; Aminy Ma’ruf, Firda

    2018-03-01

    Microarray Technology is one of technology which able to read the structure of gen. The analysis is important for this technology. It is for deciding which attribute is more important than the others. Microarray technology is able to get cancer information to diagnose a person’s gen. Preparation of microarray data is a huge problem and takes a long time. That is because microarray data contains high number of insignificant and irrelevant attributes. So, it needs a method to reduce the dimension of microarray data without eliminating important information in every attribute. This research uses Mutual Information to reduce dimension. System is built with Machine Learning approach specifically Bayes Theorem. This theorem uses a statistical and probability approach. By combining both methods, it will be powerful for Microarray Data Classification. The experiment results show that system is good to classify Microarray data with highest F1-score using Bayesian Network by 91.06%, and Naïve Bayes by 88.85%.

  2. TileCal Trigger Tower studies considering additional segmentation on the ATLAS upgrade for high luminosity at LHC

    CERN Document Server

    March, L; The ATLAS collaboration

    2013-01-01

    The Tile Calorimeter (TileCal) is the hadronic calorimeter covering the most central region of the ATLAS experiment at LHC. The TileCal readout consists of about 10000 channels and provides a compact information, called trigger towers (around 2000 signals), to the ATLAS first level online event selection system. The ATLAS upgrade program is divided in three phases: Phase 0 occurs during 2013- 2014 and prepares the LHC to reach peak luminosities of 10^34 cm2s-1; Phase 1, foreseen for 2018-1019, prepares the LHC for peak luminosity up to 2-3 x 10^34 cm2s-1, corresponding to 55 to 80 interactions per bunch-crossing with 25 ns bunch interval; and Phase 2 is foreseen for 2022-2023, whereafter the peak luminosity will reach 5-7 x 1034 cm2s-1 (HL-LHC). The ATLAS experiment is operating very well since 2009 providing large amount of data for physics analysis. The online event selection system (trigger system) was designed to reject the huge amount of background noise generated at LHC and is one of the main systems re...

  3. Kinetic calculation of plasma deposition in castellated tile gaps

    International Nuclear Information System (INIS)

    Dejarnac, R.; Gunn, J.P.

    2007-01-01

    Plasma-facing divertors and limiters are armoured with castellated tiles to withstand intense heat fluxes. Recent experimental studies show that a non-negligible amount of deuterium is deposited in the gaps between tiles. We present here a numerical study of plasma deposition in this critical region. For this purpose we have developed a particle-in-cell code with realistic boundary conditions determined from kinetic calculations. We find a strong asymmetry of plasma deposition into the gaps. A significant fraction of the plasma influx is expelled from the gap to be deposited on the leading edge of the downstream tile

  4. Parallel scan hyperspectral fluorescence imaging system and biomedical application for microarrays

    International Nuclear Information System (INIS)

    Liu Zhiyi; Ma Suihua; Liu Le; Guo Jihua; He Yonghong; Ji Yanhong

    2011-01-01

    Microarray research offers great potential for analysis of gene expression profile and leads to greatly improved experimental throughput. A number of instruments have been reported for microarray detection, such as chemiluminescence, surface plasmon resonance, and fluorescence markers. Fluorescence imaging is popular for the readout of microarrays. In this paper we develop a quasi-confocal, multichannel parallel scan hyperspectral fluorescence imaging system for microarray research. Hyperspectral imaging records the entire emission spectrum for every voxel within the imaged area in contrast to recording only fluorescence intensities of filter-based scanners. Coupled with data analysis, the recorded spectral information allows for quantitative identification of the contributions of multiple, spectrally overlapping fluorescent dyes and elimination of unwanted artifacts. The mechanism of quasi-confocal imaging provides a high signal-to-noise ratio, and parallel scan makes this approach a high throughput technique for microarray analysis. This system is improved with a specifically designed spectrometer which can offer a spectral resolution of 0.2 nm, and operates with spatial resolutions ranging from 2 to 30 μm . Finally, the application of the system is demonstrated by reading out microarrays for identification of bacteria.

  5. Preparation of porcelain tile granulates by more environmentally sustainable processes

    Energy Technology Data Exchange (ETDEWEB)

    Gil, C.; Silvestre, D.; Piquer, J.; Garcia-Ten, J.; Quereda, E.; Vicente, M. J.

    2012-07-01

    This study examines the feasibility of manufacturing glazed porcelain tiles with a more environmentally friendly manufacturing process, by reducing water and thermal energy consumption. The process studied in this paper is dry milling in a pendulum mill, with subsequent granulation (in order to obtain a press powder with similar flow ability to that of spray dried powders). The different morphology of the new granulate with respect to the standard spray-dried granulate modifies the microstructure of the green compacts and thus, their behaviour and fired tile properties. In order to obtain porcelain tiles with the required properties (water absorption, mechanical strength,) changes have been made in the raw materials mixture and in the processing variables. Finally, porcelain tiles measuring 50x50 cm have been manufactured at industrial scale with the new granulate using a conventional firing cycle, obtaining quality levels identical to those provided by the spray-dried granulate. These results open the possibility of preparing porcelain tile body compositions through a manufacturing process alternative to the standard one, more environmentally friendly and with lower costs. (Author)

  6. Research on Reasons for Repeated Falling of Tiles in Internal Walls of Construction

    Science.gov (United States)

    Xu, LiBin; Chen, Shangwei; He, Xinzhou; Zhu, Guoliang

    2018-03-01

    In view of the quality problem of repeated falling of facing tiles in some construction, the essay had a comparative trial in laboratory on cement mortar which is often used to paste tiles, special tile mortar and dry-hang glue, and measured durability of tile adhesive mortar through freezing and thawing tests. The test results indicated that ordinary cement mortar cannot meet standards due to reasons like big shrinkage and low adhesive. In addition, the ten times of freezing and thawing tests indicated that ordinary cement mortar would directly shell and do not have an adhesive force, and moreover, adhesive force of special tile mortar would reduce. Thus, for tiles of large size which are used for walls, dry-hang techniques are recommended to be used.

  7. Military Curriculum Materials for Vocational and Technical Education. Builders School, Ceramic Tile Setting 3-9.

    Science.gov (United States)

    Ohio State Univ., Columbus. National Center for Research in Vocational Education.

    This course, for individualized or group instruction on ceramic tile setting, was developed from military sources for use in vocational education. The course provides students with skills in mortar preparation, surface preparation, tile layout planning, tile setting, tile cutting, and the grouting of tile joints. Both theory and shop assignments…

  8. Calibration and performance of the ATLAS Tile Calorimeter during the LHC Run 2

    Science.gov (United States)

    Cerda Alberich, L.

    2018-02-01

    The Tile Calorimeter (TileCal) is the hadronic sampling calorimeter of the ATLAS experiment at the Large Hadron Collider (LHC). TileCal uses iron absorbers and scintillators as active material and it covers the central region | η| < 1.7. Jointly with the other sub-detectors it is designed for measurements of hadrons, jets, tau-particles and missing transverse energy. It also assists in muon identification. TileCal is regularly monitored and calibrated by several different calibration systems: a Cs radioactive source, a laser light system to check the PMT response, and a charge injection system (CIS) to check the front-end electronics. These calibration systems, in conjunction with data collected during proton-proton collisions, Minimum Bias (MB) events, provide extensive monitoring of the instrument and a means for equalizing the calorimeter response at each stage of the signal propagation. The performance of the calorimeter has been established with cosmic ray muons and the large sample of the proton-proton collisions and compared to Monte Carlo (MC) simulations. The response of high momentum isolated muons is also used to study the energy response at the electromagnetic scale, isolated hadrons are used as a probe of the hadronic response. The calorimeter time resolution is studied with multijet events. A description of the different TileCal calibration systems and the results on the calorimeter performance during the LHC Run 2 are presented. The results on the pile-up noise and response uniformity studies are also discussed.

  9. Flat tile armour cooled by hypervapotron tube: a possible technology for ITER

    Energy Technology Data Exchange (ETDEWEB)

    Schlosser, J.; Escourbiac, F.; Bayetti, P.; Missirlian, M.; Mitteau, R. [Association Euratom-CEA Cadarache, 13 - Saint-Paul-lez-Durance (France). Dept. de Recherches sur la Fusion Controlee; Merola, M. [European Fusion Development Agreement - Close Support Unit (EFDA), Garching (Germany); Schedler, B. [Plansee Aktiengesellschaft, Technology Center, Reutte/Tirol (Austria); Bobin-Vastra, I. [FRAMATOME-ANP, Centre Technique, 71 - Le Creusot (France)

    2003-07-01

    Carbon fibre composite (CFC) flat tile armours for actively cooled plasma facing components (PFC's) are an important challenge for controlled fusion machine. Flat tile concepts, water cooled by tubes, were studied, developed, tested and finally experienced with success in Tore Supra. The components were designed for 10 MW/m{sup 2} and mock-ups were successfully fatigue tested at 15 MW/m{sup 2}, 1000 cycles. For ITER, a tube-in-tile concept was developed and mock-ups sustained up to 25 MW/m{sup 2} for 1000 cycles without failure. Recently flat tile armored mock-ups cooled by Hypervapotron tube successfully sustained a cascade failure test under a mean heat flux of 10 MW/m{sup 2} but with a doubling of the heat flux on some tiles to simulate missing tiles (500 cycles). This encouraging results lead to reconsider the limits for flat tile concept when cooled by Hypervapotron tube. New tests are now scheduled to investigate these limits notably in regards to the ITER requirements. The concept could also be experimented in Tore Supra by installing a new limiter into the machine. (authors)

  10. Flat Tile Armour Cooled by Hypervapotron Tube: a Possible Technology for ITER

    Science.gov (United States)

    Schlosser, J.; Escourbiac, F.; Merola, M.; Schedler, B.; Bayetti, P.; Missirlian, M.; Mitteau, R.; Robin-Vastra, I.

    Carbon fibre composite (CFC) flat tile armours for actively cooled plasma facing components (PFC’s) are an important challenge for controlled fusion machines. Flat tile concepts, water cooled by tubes, were studied, developed, tested and finally operated with success in Tore Supra. The components were designed for 10 MW/m2 and mock-ups were successfully fatigue tested at 15 MW/m2, 1000 cycles. For ITER, a tube-in-tile concept was developed and mock-ups sustained up to 25 MW/m2 for 1000 cycles without failure. Recently flat tile armoured mock-ups cooled by a hypervapotron tube successfully sustained a cascade failure test under a mean heat flux of 10 MW/m2 but with a doubling of the heat flux on some tiles to simulate missing tiles (500 cycles). This encouraging results lead to reconsider the limits for flat tile concept when cooled by hypervapotron (HV) tube. New tests are now scheduled to investigate these limits in regard to the ITER requirements. Experimental evidence of the concept could be gained in Tore Supra by installing a new limiter into the machine.

  11. Flat Tile Armour Cooled by Hypervapotron Tube: a Possible Technology for ITER

    Energy Technology Data Exchange (ETDEWEB)

    Schlosser, J.; Escourbiac, F.; Bayetti, P.; Missirlian, M.; Mitteau, R. [Association Euratom CEA, DSM/DRFC/SIPP, St Paul lez Durance (France); Merola, M. [EFDA Close Support Unit, Garching (Germany); Schedler, B. [Plansee Aktiengesellschaft, Reutte (Austria). Technology Center; Bobin-Vastra, I. [Framatome-ANP, Le Creusot (France). Centre Technique

    2004-08-01

    Carbon fibre composite (CFC) flat tile armours for actively cooled plasma facing components (PFC's) are an important challenge for controlled fusion machines. Flat tile concepts, water cooled by tubes, were studied, developed, tested and finally operated with success in Tore Supra. The components were designed for 10MW/m{sup 2} and mock-ups were successfully fatigue tested at 15MW/m{sup 2}; 1000 cycles. For ITER, a tube-in-tile concept was developed and mock-ups sustained up to 25MW/m{sup 2} for 1000 cycles without failure. Recently flat tile armoured mock-ups cooled by a hypervapotron tube successfully sustained a cascade failure test under a mean heat flux of 10MW/m{sup 2} but with a doubling of the heat flux on some tiles to simulate missing tiles (500 cycles). This encouraging results lead to reconsider the limits for flat tile concept when cooled by hypervapotron (HV) tube. New tests are now scheduled to investigate these limits in regard to the ITER requirements. Experimental evidence of the concept could be gained in Tore Supra by installing a new limiter into the machine.

  12. A Low Density Microarray Method for the Identification of Human Papillomavirus Type 18 Variants

    Science.gov (United States)

    Meza-Menchaca, Thuluz; Williams, John; Rodríguez-Estrada, Rocío B.; García-Bravo, Aracely; Ramos-Ligonio, Ángel; López-Monteon, Aracely; Zepeda, Rossana C.

    2013-01-01

    We describe a novel microarray based-method for the screening of oncogenic human papillomavirus 18 (HPV-18) molecular variants. Due to the fact that sequencing methodology may underestimate samples containing more than one variant we designed a specific and sensitive stacking DNA hybridization assay. This technology can be used to discriminate between three possible phylogenetic branches of HPV-18. Probes were attached covalently on glass slides and hybridized with single-stranded DNA targets. Prior to hybridization with the probes, the target strands were pre-annealed with the three auxiliary contiguous oligonucleotides flanking the target sequences. Screening HPV-18 positive cell lines and cervical samples were used to evaluate the performance of this HPV DNA microarray. Our results demonstrate that the HPV-18's variants hybridized specifically to probes, with no detection of unspecific signals. Specific probes successfully reveal detectable point mutations in these variants. The present DNA oligoarray system can be used as a reliable, sensitive and specific method for HPV-18 variant screening. Furthermore, this simple assay allows the use of inexpensive equipment, making it accessible in resource-poor settings. PMID:24077317

  13. Surface chemistry analysis of lithium conditioned NSTX graphite tiles correlated to plasma performance

    Energy Technology Data Exchange (ETDEWEB)

    Taylor, C.N., E-mail: chase.taylor@inl.gov [Purdue University, School of Nuclear Engineering, West Lafayette, IN 47906 (United States); Birck Nanotechnology Center, Discovery Park, West Lafayette, IN 47907 (United States); Luitjohan, K.E. [Purdue University, School of Nuclear Engineering, West Lafayette, IN 47906 (United States); Heim, B. [Purdue University, School of Nuclear Engineering, West Lafayette, IN 47906 (United States); Birck Nanotechnology Center, Discovery Park, West Lafayette, IN 47907 (United States); Kollar, L. [Purdue University, School of Nuclear Engineering, West Lafayette, IN 47906 (United States); Allain, J.P. [Purdue University, School of Nuclear Engineering, West Lafayette, IN 47906 (United States); Birck Nanotechnology Center, Discovery Park, West Lafayette, IN 47907 (United States); Skinner, C.H.; Kugel, H.W.; Kaita, R.; Roquemore, A.L. [Princeton Plasma Physics Laboratory, Princeton, NJ 08543 (United States); Maingi, R. [Oak Ridge National Laboratory, Oak Ridge, TN 37831 (United States)

    2013-12-15

    Lithium wall conditioning in NSTX has resulted in reduced divertor recycling, improved energy confinement, and reduced frequency of edge-localized modes (ELMs), up to the point of complete ELM suppression. NSTX tiles were removed from the vessel following the 2008 campaign and subsequently analyzed using X-ray photoelectron spectroscopy as well as nuclear reaction ion beam analysis. In this paper we relate surface chemistry to deuterium retention/recycling, develop methods for cleaning of passivated NSTX tiles, and explore a method to effectively extract bound deuterium from lithiated graphite. Li–O–D and Li–C–D complexes characteristic of deuterium retention that form during NSTX operations are revealed by sputter cleaning and heating. Heating to ∼850 °C desorbed all deuterium complexes observed in the O 1s and C 1s photoelectron energy ranges. Tile locations within approximately ±2.5 cm of the lower vertical/horizontal divertor corner appear to have unused Li-O bonds that are not saturated with deuterium, whereas locations immediately outboard of this region indicate high deuterium recycling. X-ray photo electron spectra of a specific NSTX tile with wide ranging lithium coverage indicate that a minimum lithium dose, 100–500 nm equivalent thickness, is required for effective deuterium retention. This threshold is suspected to be highly sensitive to surface morphology. The present analysis may explain why plasma discharges in NSTX continue to benefit from lithium coating thickness beyond the divertor deuterium ion implantation depth, which is nominally <10 nm.

  14. Development of a remote handling system for replacement of armor tiles in the Fusion Experimental Reactor

    International Nuclear Information System (INIS)

    Adachi, J.; Kakudate, S.; Oka, K.; Seki, M.

    1995-01-01

    The armor tiles of the Fusion Experimental Reactor (FER) planned by JAERI are categorized as scheduled maintenance components, since they are damaged by severe heat and particle loads from the plasma during operation. A remote handling system is thus required to replace a large number of tiles rapidly in the highly activated reactor. However, the simple teaching-playback method cannot be adapted to this system because of deflection of the tiles caused by thermal deformation and so on. We have developed a control system using visual feedback control to adapt to this deflection and an end-effector for a single arm. We confirm their performance in tests. (orig.)

  15. Weight change measurements of erosion/deposition at beryllium limiter tiles in the Impurity Study Experiment-B

    International Nuclear Information System (INIS)

    Roberto, J.B.; Edmonds, P.H.; England, A.C.; Gabbard, A.; Zuhr, R.A.

    1986-01-01

    The weight changes of Be tiles which functioned as a rail limiter in ISX-B for more than 3500 beam-heated discharges have been determined. The net weight loss for the limiter was 2.0 g, with the central tiles losing a total of 3.2 g, and the inboard tiles gaining 1.2 g. The weight loss is attributed primarily to the release of Be droplets as a result of limiter surface melting. The weight gains resulted from an inward flow of molten material along the limiter surface. The results indicate high erosion (melt loss) with incomplete and nonuniform redeposition (melt flow) of limiter material during periods of limiter melting

  16. Development of high-density ceramic composites for ballistic applications

    International Nuclear Information System (INIS)

    Rupert, N.L.; Burkins, M.S.; Gooch, W.A.; Walz, M.J.; Levoy, N.F.; Washchilla, E.P.

    1993-01-01

    The application of ceramic composites for ballistic application has been generally developed with ceramics of low density, between 2.5 and 4.5 g/cm 2 . These materials have offered good performance in defeating small-caliber penetrators, but can suffer time-dependent degradation effects when thicker ceramic tiles are needed to defeat modem, longer, heavy metal penetrators that erode rather than break up. This paper addresses the ongoing development, fabrication procedures, analysis, and ballistic evaluation of thinner, denser ceramics for use in armor applications. Nuclear Metals Incorporated (NMI) developed a process for the manufacture of depleted uranium (DU) ceramics. Samples of the ceramics have been supplied to the US Army Research Laboratory (ARL) as part of an unfunded cooperative study agreement. The fabrication processes used, characterization of the ceramic, and a ballistic comparison between the DU-based ceramic with baseline Al 2 O 3 will be presented

  17. Similarity of eigenstates in generalized labyrinth tilings

    International Nuclear Information System (INIS)

    Thiem, Stefanie; Schreiber, Michael

    2010-01-01

    The eigenstates of d-dimensional quasicrystalline models with a separable Hamiltonian are studied within the tight-binding model. The approach is based on mathematical sequences, constructed by an inflation rule P = {w → s,s → sws b-1 } describing the weak/strong couplings of atoms in a quasiperiodic chain. Higher-dimensional quasiperiodic tilings are constructed as a direct product of these chains and their eigenstates can be directly calculated by multiplying the energies E or wave functions ψ of the chain, respectively. Applying this construction rule, the grid in d dimensions splits into 2 d-1 different tilings, for which we investigated the characteristics of the wave functions. For the standard two-dimensional labyrinth tiling constructed from the octonacci sequence (b = 2) the lattice breaks up into two identical lattices, which consequently yield the same eigenstates. While this is not the case for b ≠ 2, our numerical results show that the wave functions of the different grids become increasingly similar for large system sizes. This can be explained by the fact that the structure of the 2 d-1 grids mainly differs at the boundaries and thus for large systems the eigenstates approach each other. This property allows us to analytically derive properties of the higher-dimensional generalized labyrinth tilings from the one-dimensional results. In particular participation numbers and corresponding scaling exponents have been determined.

  18. Evaluation of Salt Removal from Azulejo Tiles and Mortars using Electrodesalination

    DEFF Research Database (Denmark)

    Ferreira, Célia Maria Dias; Ottosen, Lisbeth M.; Christensen, Iben Vernegren

    2011-01-01

    Azulejo tiles are part of the Portuguese cultural heritage and are worldwide appreciated. The durability of this building material is affected by the accumulation of salts, causing fractures and peeling of the glazing and ultimately leading to the degradation of the tile panels and the irremediable...... loss of historic value. In this work preliminary studies with single tiles presenting an underlying layer of mortar have been conducted to assess the amount of salts that can be removed from the building material using a new technique called “electrodesalination”, in which the salt’s ions...... are transported out from the tiles by applying an electric current on the backside. Results shown here include an assessment of how much of the salts did come out in comparison to what was originally there, and additionally if the electrodesalination succeeded in removing salts down to a point where the tile...

  19. Tumour auto-antibody screening: performance of protein microarrays using SEREX derived antigens

    International Nuclear Information System (INIS)

    Stempfer, René; Weinhäusel, Andreas; Syed, Parvez; Vierlinger, Klemens; Pichler, Rudolf; Meese, Eckart; Leidinger, Petra; Ludwig, Nicole; Kriegner, Albert; Nöhammer, Christa

    2010-01-01

    The simplicity and potential of minimal invasive testing using serum from patients make auto-antibody based biomarkers a very promising tool for use in diagnostics of cancer and auto-immune disease. Although several methods exist for elucidating candidate-protein markers, immobilizing these onto membranes and generating so called macroarrays is of limited use for marker validation. Especially when several hundred samples have to be analysed, microarrays could serve as a good alternative since processing macro membranes is cumbersome and reproducibility of results is moderate. Candidate markers identified by SEREX (serological identification of antigens by recombinant expression cloning) screenings of brain and lung tumour were used for macroarray and microarray production. For microarray production recombinant proteins were expressed in E. coli by autoinduction and purified His-tag (histidine-tagged) proteins were then used for the production of protein microarrays. Protein arrays were hybridized with the serum samples from brain and lung tumour patients. Methods for the generation of microarrays were successfully established when using antigens derived from membrane-based selection. Signal patterns obtained by microarrays analysis of brain and lung tumour patients' sera were highly reproducible (R = 0.92-0.96). This provides the technical foundation for diagnostic applications on the basis of auto-antibody patterns. In this limited test set, the assay provided high reproducibility and a broad dynamic range to classify all brain and lung samples correctly. Protein microarray is an efficient means for auto-antibody-based detection when using SEREX-derived clones expressing antigenic proteins. Protein microarrays are preferred to macroarrays due to the easier handling and the high reproducibility of auto-antibody testing. Especially when using only a few microliters of patient samples protein microarrays are ideally suited for validation of auto

  20. Test Beam Studies for the ATLAS Tile Calorimeter Upgrade Readout Electronics

    CERN Document Server

    Schaefer, Douglas; The ATLAS collaboration

    2018-01-01

    The High Luminosity Large Hadron Collider is expected to deliver 3-4/ab of p-p collisions with around 200 collisions per proton bunch crossing starting in 2026, and the readout electronics of the ATLAS Tile Calorimeter need to be upgraded to deal with the high rate of data taking as well as the large pileup conditions. The proposed digitizer/shaper cards were tested in 2016-7 in the North Area at CERN using the beam from the SPS to produce high energy pions, electrons, muons, and kaons. This presentation summarizes the setup for particle identification and study of the ATLAS Tile Calorimeter data taking in preparation for the production of main boards and digitizer/shaper boards for the photo-multiplier tubes. The fully assembled and tested mini-drawers will start to be installed after the LHC long shutdown in December 2023. The pulse shape, uniformity, and timing precision of the upgrade system are demonstrated.

  1. SPECTRAL SETS AND TILES IN CARTESIAN PRODUCTS OVER ...

    Indian Academy of Sciences (India)

    41

    Spectral set conjecture: A Borel set Ω ⊂ Rd of positive and finite. Lebesgue measure is a spectral set if and only if it ... Ω ⊂ G of positive and finite Haar measure is a spectral set if and only if it is a translational tile. ... Key words and phrases. p-adic number field, Cartesian product, tile, spectral set. This work was supported by ...

  2. Extended DNA Tile Actuators

    DEFF Research Database (Denmark)

    Kristiansen, Martin; Kryger, Mille; Zhang, Zhao

    2012-01-01

    A dynamic linear DNA tile actuator is expanded to three new structures of higher complexity. The original DNA actuator was constructed from a central roller strand which hybridizes with two piston strands by forming two half-crossover junctions. A linear expansion of the actuator is obtained...

  3. Different responsiveness to a high-fat/cholesterol diet in two inbred mice and underlying genetic factors: a whole genome microarray analysis

    Directory of Open Access Journals (Sweden)

    Jin Gang

    2009-10-01

    Full Text Available Abstract Background To investigate different responses to a high-fat/cholesterol diet and uncover their underlying genetic factors between C57BL/6J (B6 and DBA/2J (D2 inbred mice. Methods B6 and D2 mice were fed a high-fat/cholesterol diet for a series of time-points. Serum and bile lipid profiles, bile acid yields, hepatic apoptosis, gallstones and atherosclerosis formation were measured. Furthermore, a whole genome microarray was performed to screen hepatic genes expression profile. Quantitative real-time PCR, western blot and TUNEL assay were conducted to validate microarray data. Results After fed the high-fat/cholesterol diet, serum and bile total cholesterol, serum cholesterol esters, HDL cholesterol and Non-HDL cholesterol levels were altered in B6 but not significantly changed in D2; meanwhile, biliary bile acid was decreased in B6 but increased in D2. At the same time, hepatic apoptosis, gallstones and atherosclerotic lesions occurred in B6 but not in D2. The hepatic microarray analysis revealed distinctly different genes expression patterns between B6 and D2 mice. Their functional pathway groups included lipid metabolism, oxidative stress, immune/inflammation response and apoptosis. Quantitative real time PCR, TUNEL assay and western-blot results were consistent with microarray analysis. Conclusion Different genes expression patterns between B6 and D2 mice might provide a genetic basis for their distinctive responses to a high-fat/cholesterol diet, and give us an opportunity to identify novel pharmaceutical targets in related diseases in the future.

  4. ATLAS Tile Calorimeter time calibration, monitoring and performance

    CERN Document Server

    AUTHOR|(INSPIRE)INSPIRE-00075913; The ATLAS collaboration

    2016-01-01

    The Tile Calorimeter (TileCal) is the hadronic calorimeter covering the central region of the ATLAS experiment at the LHC. This sampling device is made of plastic scintillating tiles alternated with iron plates and its response is calibrated to electromagnetic scale by means of several dedicated calibration systems. The accurate time calibration is important for the energy reconstruction, non-collision background removal as well as for specific physics analyses. The initial time calibration with so-called splash events and subsequent fine-tuning with collision data are presented. The monitoring of the time calibration with laser system and physics collision data is discussed as well as the corrections for sudden changes performed still before the recorded data are processed for physics analyses. Finally, the time resolution as measured with jets and isolated muons particles is presented.

  5. Reconnecting tile drainage to riparian buffer hydrology for enhanced nitrate removal.

    Science.gov (United States)

    Jaynes, D B; Isenhart, T M

    2014-03-01

    Riparian buffers are a proven practice for removing NO from overland flow and shallow groundwater. However, in landscapes with artificial subsurface (tile) drainage, most of the subsurface flow leaving fields is passed through the buffers in drainage pipes, leaving little opportunity for NO removal. We investigated the feasibility of re-routing a fraction of field tile drainage as subsurface flow through a riparian buffer for increasing NO removal. We intercepted an existing field tile outlet draining a 10.1-ha area of a row-cropped field in central Iowa and re-routed a fraction of the discharge as subsurface flow along 335 m of an existing riparian buffer. Tile drainage from the field was infiltrated through a perforated pipe installed 75 cm below the surface by maintaining a constant head in the pipe at a control box installed in-line with the existing field outlet. During 2 yr, >18,000 m (55%) of the total flow from the tile outlet was redirected as infiltration within the riparian buffer. The redirected water seeped through the 60-m-wide buffer, raising the water table approximately 35 cm. The redirected tile flow contained 228 kg of NO. On the basis of the strong decrease in NO concentrations within the shallow groundwater across the buffer, we hypothesize that the NO did not enter the stream but was removed within the buffer by plant uptake, microbial immobilization, or denitrification. Redirecting tile drainage as subsurface flow through a riparian buffer increased its NO removal benefit and is a promising management practice to improve surface water quality within tile-drained landscapes. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

  6. R and D and maintenance on graphite tile of divertor region at EAST

    International Nuclear Information System (INIS)

    Ji, X.; Song, Y.T.; Wu, S.T.; Hao, J.; Du, S.; Peng, Y.; Cao, L.; Wang, S.

    2012-01-01

    Highlights: ► Find out the reason of damage of graphite tile. ► Simulation the halo current. ► Stress analysis of graphite tile by ANSYS. ► Do the experiments to test the strength of graphite tile. ► Do the optimization and maintenance of graphite tile. - Abstract: EAST, with full superconducting magnetic coils, had been designed and constructed to address the scientific and engineering issues under steady state operation. The in-vessel components are full graphite tiles as first wall had been operated successfully. In the experiment campaign of 2010, the H mode operation and 1 MA operation have been gotten on EAST. However, in some case, some of the graphite tiles of divertor region are damaged with the plasma parameter enhanced. As most of the damaged graphite tiles are in the divertor region, they are probably damaged by the electro-magnetic force of the halo current when the VDEs occur. The force of the halo current is re-estimated. The structure analysis has been done by the ANSYS software. From the analysis result. It can be obtained that the stress is larger than the allowable stress when the halo current on the graphite tile is larger than 2.7 kA. The tensile testing of the graphite also has been done. As the result, the graphite tiles are damaged when the forces are up to 2400 N. To deal with the problem, two proposes are accepted. In the one hand, the new type graphite material is used, whose tensile strength is up to 45 MPa. In the other hand, the structure of the graphite tiles is optimized.

  7. Color features for quality control in ceramic tile industry

    Science.gov (United States)

    Kukkonen, Saku; Kaelviaeinen, Heikki; Parkkinen, Jussi P.

    2001-02-01

    We study visual quality control in the ceramics industry. In the manufacturing, it is important that in each set of tiles, every single tile looks similar. Currently, the estimation is usually done by human vision. Our goal is to design a machine vision system that can estimate the sufficient similarity, or same appearance, to the human eye. Our main approach is to use accurate spectral representation of color, and compare spectral features to the RGB color features. A laboratory system for color measurements is built. Experimentations with five classes of brown tiles are presented and discussed. In addition to the k-nearest neighbor (k-NN) classifier, a neural network called the self-organizing map (SOM) is used to provide understanding of the spectral features. Every single spectrum in each tile of a training set is used as input to a 2D SOM. The SOM is analyzed to understand how spectra are clustered. As a result, tiles are classified using a trained 2D SOM. It is also of interest to know whether the order of spectral colors can be determined. In our approach, all spectra are clustered in a 1D SOM, and each pixel spectrum) is presented by pseudocolors according to the trained nodes. Finally, the results are compared to experiments with human vision.

  8. Reducing nitrate loss in tile drainage water with cover crops and water-table management systems.

    Science.gov (United States)

    Drury, C F; Tan, C S; Welacky, T W; Reynolds, W D; Zhang, T Q; Oloya, T O; McLaughlin, N B; Gaynor, J D

    2014-03-01

    Nitrate lost from agricultural soils is an economic cost to producers, an environmental concern when it enters rivers and lakes, and a health risk when it enters wells and aquifers used for drinking water. Planting a winter wheat cover crop (CC) and/or use of controlled tile drainage-subirrigation (CDS) may reduce losses of nitrate (NO) relative to no cover crop (NCC) and/or traditional unrestricted tile drainage (UTD). A 6-yr (1999-2005) corn-soybean study was conducted to determine the effectiveness of CC+CDS, CC+UTD, NCC+CDS, and NCC+UTD treatments for reducing NO loss. Flow volume and NO concentration in surface runoff and tile drainage were measured continuously, and CC reduced the 5-yr flow-weighted mean (FWM) NO concentration in tile drainage water by 21 to 38% and cumulative NO loss by 14 to 16% relative to NCC. Controlled tile drainage-subirrigation reduced FWM NO concentration by 15 to 33% and cumulative NO loss by 38 to 39% relative to UTD. When CC and CDS were combined, 5-yr cumulative FWM NO concentrations and loss in tile drainage were decreased by 47% (from 9.45 to 4.99 mg N L and from 102 to 53.6 kg N ha) relative to NCC+UTD. The reductions in runoff and concomitant increases in tile drainage under CC occurred primarily because of increases in near-surface soil hydraulic conductivity. Cover crops increased corn grain yields by 4 to 7% in 2004 increased 3-yr average soybean yields by 8 to 15%, whereas CDS did not affect corn or soybean yields over the 6 yr. The combined use of a cover crop and water-table management system was highly effective for reducing NO loss from cool, humid agricultural soils. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

  9. Direct atomic force microscopy observation of DNA tile crystal growth at the single-molecule level.

    Science.gov (United States)

    Evans, Constantine G; Hariadi, Rizal F; Winfree, Erik

    2012-06-27

    While the theoretical implications of models of DNA tile self-assembly have been extensively researched and such models have been used to design DNA tile systems for use in experiments, there has been little research testing the fundamental assumptions of those models. In this paper, we use direct observation of individual tile attachments and detachments of two DNA tile systems on a mica surface imaged with an atomic force microscope (AFM) to compile statistics of tile attachments and detachments. We show that these statistics fit the widely used kinetic Tile Assembly Model and demonstrate AFM movies as a viable technique for directly investigating DNA tile systems during growth rather than after assembly.

  10. Dimension reduction methods for microarray data: a review

    Directory of Open Access Journals (Sweden)

    Rabia Aziz

    2017-03-01

    Full Text Available Dimension reduction has become inevitable for pre-processing of high dimensional data. “Gene expression microarray data” is an instance of such high dimensional data. Gene expression microarray data displays the maximum number of genes (features simultaneously at a molecular level with a very small number of samples. The copious numbers of genes are usually provided to a learning algorithm for producing a complete characterization of the classification task. However, most of the times the majority of the genes are irrelevant or redundant to the learning task. It will deteriorate the learning accuracy and training speed as well as lead to the problem of overfitting. Thus, dimension reduction of microarray data is a crucial preprocessing step for prediction and classification of disease. Various feature selection and feature extraction techniques have been proposed in the literature to identify the genes, that have direct impact on the various machine learning algorithms for classification and eliminate the remaining ones. This paper describes the taxonomy of dimension reduction methods with their characteristics, evaluation criteria, advantages and disadvantages. It also presents a review of numerous dimension reduction approaches for microarray data, mainly those methods that have been proposed over the past few years.

  11. Design of a new front-end electronics test-bench for the upgraded ATLAS detector's Tile Calorimeter

    International Nuclear Information System (INIS)

    Kureba, C O; Govender, M; Hofsajer, I; Ruan, X; Sandrock, C; Spoor, M

    2015-01-01

    The year 2022 has been scheduled to see an upgrade of the Large Hadron Collider (LHC), in order to increase its instantaneous luminosity. The High Luminosity LHC, also referred to as the upgrade Phase-II, means an inevitable complete re-design of the read-out electronics in the Tile Calorimeter (TileCal) of the A Toroidal LHC Apparatus (ATLAS) detector. Here, the new read-out architecture is expected to have the front-end electronics transmit fully digitized information of the detector to the back-end electronics system. Fully digitized signals will allow more sophisticated reconstruction algorithms which will contribute to the required improved triggers at high pile-up. In Phase II, the current Mobile Drawer Integrity ChecKing (MobiDICK) test-bench will be replaced by the next generation test-bench for the TileCal superdrawers, the new Prometeo (A Portable ReadOut ModulE for Tilecal ElectrOnics). Prometeo is a portable, high-throughput electronic system for full certification of the front-end electronics of the ATLAS TileCal. It is designed to interface to the fast links and perform a series of tests on the data to assess the certification of the electronics. The Prometeo's prototype is being assembled by the University of the Witwatersrand and installed at CERN for further developing, tuning and tests. This article describes the overall design of the new Prometeo, and how it fits into the TileCal electronics upgrade. (paper)

  12. Identifying Fishes through DNA Barcodes and Microarrays.

    Directory of Open Access Journals (Sweden)

    Marc Kochzius

    2010-09-01

    Full Text Available International fish trade reached an import value of 62.8 billion Euro in 2006, of which 44.6% are covered by the European Union. Species identification is a key problem throughout the life cycle of fishes: from eggs and larvae to adults in fisheries research and control, as well as processed fish products in consumer protection.This study aims to evaluate the applicability of the three mitochondrial genes 16S rRNA (16S, cytochrome b (cyt b, and cytochrome oxidase subunit I (COI for the identification of 50 European marine fish species by combining techniques of "DNA barcoding" and microarrays. In a DNA barcoding approach, neighbour Joining (NJ phylogenetic trees of 369 16S, 212 cyt b, and 447 COI sequences indicated that cyt b and COI are suitable for unambiguous identification, whereas 16S failed to discriminate closely related flatfish and gurnard species. In course of probe design for DNA microarray development, each of the markers yielded a high number of potentially species-specific probes in silico, although many of them were rejected based on microarray hybridisation experiments. None of the markers provided probes to discriminate the sibling flatfish and gurnard species. However, since 16S-probes were less negatively influenced by the "position of label" effect and showed the lowest rejection rate and the highest mean signal intensity, 16S is more suitable for DNA microarray probe design than cty b and COI. The large portion of rejected COI-probes after hybridisation experiments (>90% renders the DNA barcoding marker as rather unsuitable for this high-throughput technology.Based on these data, a DNA microarray containing 64 functional oligonucleotide probes for the identification of 30 out of the 50 fish species investigated was developed. It represents the next step towards an automated and easy-to-handle method to identify fish, ichthyoplankton, and fish products.

  13. Preparation and characterization of photochromic effect for ceramic tiles

    Directory of Open Access Journals (Sweden)

    Atay, B.

    2011-08-01

    Full Text Available Ceramic tile industry is developing due to the technological researches in scientific area and new tiles which are not only a traditional ceramic also have many multiple functionalities have been marketed nowadays. These tiles like photocatalytic, photovoltaic, antibacterial and etc. improve the quality of life and provide lots of benefits such as self cleaning, energy production, climate control. The goal of this study was to enhance the photochromic function on ceramic tiles which is the attitude of changing color in a reversible way by electromagnetic radiation and widely used in many areas because of its aesthetic and also functional properties. High response time of photochromic features of ceramic tiles have been achieved by employing of polymeric gel with additives of photoactive dye onto the ceramic surface. Photochromic layer with a thickness of approximately 45- 50 µm was performed by using spray coating technique which provided homogeneous deposition on surface. Photochromic ceramic tiles with high photochromic activity such as reversibly color change between ΔE= 0.29 and 26.31 were obtained successfully. The photochromic performance properties and coloring-bleaching mechanisms were analyzed by spectrophotometer. The microstructures of coatings were investigated both by stereo microscopy and scanning electron microscopy (SEM.

    La industria de baldosa cerámica se está desarrollando debido a las investigaciones tecnológicas en el área científica y los nuevos azulejos no son sólo de cerámica tradicional, sino que también tienen múltiples funcionalidades que son valiosas en el mercado hoy en día. Estos azulejos tipo fotocatalítico, fotovoltáico, anti-bacteriano, entre otros, mejoran la calidad de vida y proporcionan muchos beneficios como la limpieza fácil o de uno mismo, la producción energética y el control del clima. La meta de este estudio es realzar la función fotocrómatica en las baldosas cerámicas y la

  14. Control of Sound Transmission with Active-Passive Tiles

    OpenAIRE

    Goldstein, Andre L.

    2006-01-01

    Nowadays, numerous applications of active sound transmission control require lightweight partitions with high transmission loss over a broad frequency range and simple control strategies. In this work an active-passive sound transmission control approach is investigated that potentially addresses these requirements. The approach involves the use of lightweight stiff panels, or tiles, attached to a radiating base structure through active-passive soft mounts and covering the structure surface. ...

  15. Development of remote replacement system for armor tiles of first wall of FER

    International Nuclear Information System (INIS)

    Adachi, Junichi; Yoshizawa, Shunji; Nakano, Yasuo; Kuboyama, Takashi; Shibanuma, Kiyoshi; Kakudate, Satoshi; Oka, Kiyoshi.

    1993-01-01

    A remote system has been developed to replace automatically armor tiles of first walls with a single manipulator arm for the Fusion Experimental Reactor (FER). The system is composed of a manipulator arm and an end-effector (a tile replacement hand), which have a gripper of the tiles, a nutrunner to rotate attatching bolts of them and a vision sensor to measure positions of them. The system can replace the tiles by means of a visual feedback system using vision sensor, even if the positions of the tiles would have changed. As a result of tests, it has been proved that the end-effector is useful and the control system is practicable. (author)

  16. Timing distribution and Data Flow for the ATLAS Tile Calorimeter Phase II Upgrade

    CERN Document Server

    AUTHOR|(SzGeCERN)713745; The ATLAS collaboration

    2016-01-01

    The Hadronic Tile Calorimeter (TileCal) detector is one of the several subsystems composing the ATLAS experiment at the Large Hadron Collider (LHC). The LHC upgrade program plans an increase of order five times the LHC nominal instantaneous luminosity culminating in the High Luminosity LHC (HL-LHC). In order to accommodate the detector to the new HL-LHC parameters, the TileCal read out electronics is being redesigned introducing a new read out strategy with a full-digital trigger system. In the new read out architecture, the front-end electronics allocates the MainBoards and the DaughterBoards. The MainBoard digitizes the analog signals coming from the PhotoMultiplier Tubes (PMTs), provides integrated data for minimum bias monitoring and includes electronics for PMT calibration. The DaughterBoard receives and distributes Detector Control System (DCS) commands, clock and timing commands to the rest of the elements of the front-end electronics, as well as, collects and transmits the digitized data to the back-e...

  17. The Monitoring and Calibration Web Systems for the ATLAS Tile Calorimeter Data Quality Analysis

    International Nuclear Information System (INIS)

    Sivolella, A; Maidantchik, C; Ferreira, F

    2012-01-01

    The Tile Calorimeter (TileCal) is one of the ATLAS sub-detectors. The read-out is performed by about 10,000 PhotoMultiplier Tubes (PMTs). The signal of each PMT is digitized by an electronic channel. The Monitoring and Calibration Web System (MCWS) supports the data quality analysis of the electronic channels. This application was developed to assess the detector status and verify its performance. It can provide to the user the list of TileCal known problematic channels, that is stored in the ATLAS condition database (COOL DB). The bad channels list guides the data quality validator in identifying new problematic channels and is used in data reconstruction and the system allows to update the channels list directly in the COOL database. MCWS can generate summary results, such as eta-phi plots and comparative tables of the masked channels percentage. Regularly, during the LHC (Large Hadron Collider) shutdown a maintenance of the detector equipments is performed. When a channel is repaired, its calibration constants stored in the COOL database have to be updated. Additionally MCWS system manages the update of these calibration constants values in the COOL database. The MCWS has been used by the Tile community since 2008, during the commissioning phase, and was upgraded to comply with ATLAS operation specifications. Among its future developments, it is foreseen an integration of MCWS with the TileCal control Web system (DCS) in order to identify high voltage problems automatically.

  18. Tile Surface Thermocouple Measurement Challenges from the Orbiter Boundary Layer Transition Flight Experiment

    Science.gov (United States)

    Campbell, Charles H.; Berger, Karen; Anderson, Brian

    2012-01-01

    Hypersonic entry flight testing motivated by efforts seeking to characterize boundary layer transition on the Space Shuttle Orbiters have identified challenges in our ability to acquire high quality quantitative surface temperature measurements versus time. Five missions near the end of the Space Shuttle Program implemented a tile surface protuberance as a boundary layer trip together with tile surface thermocouples to capture temperature measurements during entry. Similar engineering implementations of these measurements on Discovery and Endeavor demonstrated unexpected measurement voltage response during the high heating portion of the entry trajectory. An assessment has been performed to characterize possible causes of the issues experienced during STS-119, STS-128, STS-131, STS-133 and STS-134 as well as similar issues encountered during other orbiter entries.

  19. Analysis and design of the beryllium tiles for the JET ITER-like wall project

    International Nuclear Information System (INIS)

    Thompson, V.; Krivchenkov, Y.; Riccardo, V.; Vizvary, Z.

    2007-01-01

    Work is in progress to completely replace, in 2008/9, the existing JET CFC tiles with a configuration of plasma facing materials consistent with the ITER design. The ITER-like wall (ILW) will be created with a combination of beryllium (Be), tungsten (W), W-coated CFC and Be-coated inconel tiles, with the material depending on the local anticipated heat flux and geometry. Over 4000 tiles will be replaced and the ILW will accommodate additional heating up to at least 50 MW for 10 s. One of the objectives is to maintain or improve the existing CFC tile power handling performance which has been achieved in most cases by hiding bolt holes, optimising tile size and profile and introducing castellations on plasma facing surfaces. This paper describes the generic problems associated with the Be tiles (power handling capacity and disruption induced eddy currents) and illustrates the solution selected for the inner wall guard limiter (IWGL) where the present CFC tiles will be replaced with Be

  20. eSensor: an electrochemical detection-based DNA microarray technology enabling sample-to-answer molecular diagnostics

    Science.gov (United States)

    Liu, Robin H.; Longiaru, Mathew

    2009-05-01

    DNA microarrays are becoming a widespread tool used in life science and drug screening due to its many benefits of miniaturization and integration. Microarrays permit a highly multiplexed DNA analysis. Recently, the development of new detection methods and simplified methodologies has rapidly expanded the use of microarray technologies from predominantly gene expression analysis into the arena of diagnostics. Osmetech's eSensor® is an electrochemical detection platform based on a low-to- medium density DNA hybridization array on a cost-effective printed circuit board substrate. eSensor® has been cleared by FDA for Warfarin sensitivity test and Cystic Fibrosis Carrier Detection. Other genetic-based diagnostic and infectious disease detection tests are under development. The eSensor® platform eliminates the need for an expensive laser-based optical system and fluorescent reagents. It allows one to perform hybridization and detection in a single and small instrument without any fluidic processing and handling. Furthermore, the eSensor® platform is readily adaptable to on-chip sample-to-answer genetic analyses using microfluidics technology. The eSensor® platform provides a cost-effective solution to direct sample-to-answer genetic analysis, and thus have a potential impact in the fields of point-of-care genetic analysis, environmental testing, and biological warfare agent detection.

  1. Large-area full field x-ray differential phase-contrast imaging using 2D tiled gratings

    Science.gov (United States)

    Schröter, Tobias J.; Koch, Frieder J.; Kunka, Danays; Meyer, Pascal; Tietze, Sabrina; Engelhardt, Sabine; Zuber, Marcus; Baumbach, Tilo; Willer, Konstantin; Birnbacher, Lorenz; Prade, Friedrich; Pfeiffer, Franz; Reichert, Klaus-Martin; Hofmann, Andreas; Mohr, Jürgen

    2017-06-01

    Grating-based x-ray differential phase-contrast imaging (DPCI) is capable of acquiring information based on phase-shift and dark-field signal, in addition to conventional x-ray absorption-contrast. Thus DPCI gives an advantage to investigate composite materials with component wise similar absorption properties like soft tissues. Due to technological challenges in fabricating high quality gratings over a large extent, the field of view (FoV) of the imaging systems is limited to a grating area of a couple of square centimeters. For many imaging applications (e.g. in medicine), however, a FoV that ranges over several ten centimeters is needed. In this manuscript we propose to create large area gratings of theoretically any extent by assembling a number of individual grating tiles. We discuss the precision needed for alignment of each microstructure tile in order to reduce image artifacts and to preserve minimum 90% of the sensitivity obtainable with a monolithic grating. To achieve a reliable high precision alignment a semiautomatic assembly system consisting of a laser autocollimator, a digital microscope and a force sensor together with positioning devices was built. The setup was used to tile a first four times four analyzer grating with a size of 200 mm  ×  200 mm together with a two times two phase grating. First imaging results prove the applicability and quality of the tiling concept.

  2. Addressable droplet microarrays for single cell protein analysis.

    Science.gov (United States)

    Salehi-Reyhani, Ali; Burgin, Edward; Ces, Oscar; Willison, Keith R; Klug, David R

    2014-11-07

    Addressable droplet microarrays are potentially attractive as a way to achieve miniaturised, reduced volume, high sensitivity analyses without the need to fabricate microfluidic devices or small volume chambers. We report a practical method for producing oil-encapsulated addressable droplet microarrays which can be used for such analyses. To demonstrate their utility, we undertake a series of single cell analyses, to determine the variation in copy number of p53 proteins in cells of a human cancer cell line.

  3. Versatile High Throughput Microarray Analysis for Marine Glycobiology

    DEFF Research Database (Denmark)

    Asunción Salmeán, Armando

    to concept proof that is possible to use the Comprehensive Microarray Polymer Profiling (CoMPP) as a tool for other extracellular matrixes such as marine animals and not only for algal or plant cell walls. Thus, we discovered fucoidan and cellulose epitopes in several tissues of various marine animals from...... in cell development. Another part of this work focused in the development of a novel methodology for the discovery of unknown algal polysaccharides and characterization of carbohydrate binding proteins. Based on the coevolution between alga and marine saprophytic microorganisms, which use the algal...

  4. Direct Atomic Force Microscopy Observation of DNA Tile Crystal Growth at the Single-Molecule Level

    OpenAIRE

    Evans, Constantine G.; Hariadi, Rizal F.; Winfree, Erik

    2012-01-01

    While the theoretical implications of models of DNA tile self-assembly have been extensively researched and such models have been used to design DNA tile systems for use in experiments, there has been little research testing the fundamental assumptions of those models. In this paper, we use direct observation of individual tile attachments and detachments of two DNA tile systems on a mica surface imaged with an atomic force microscope (AFM) to compile statistics of tile attachments and detach...

  5. Chemical functionalization of ceramic tile surfaces by silane coupling agents: polymer modified mortar adhesion mechanism implications

    Directory of Open Access Journals (Sweden)

    Alexandra Ancelmo Piscitelli Mansur

    2008-09-01

    Full Text Available Adhesion between tiles and mortars are crucial to the stability of ceramic tile systems. From the chemical point of view, weak forces such as van der Waals forces and hydrophilic interactions are expected to be developed preferably at the tiles and polymer modified Portland cement mortar interface. The main goal of this paper was to use organosilanes as primers to modify ceramic tile hydrophilic properties to improve adhesion between ceramic tiles and polymer modified mortars. Glass tile surfaces were treated with several silane derivatives bearing specific functionalities. Contact angle measurements and Fourier Transform Infrared Spectroscopy (FTIR were used for evaluating the chemical changes on the tile surface. In addition, pull-off tests were conducted to assess the effect on adhesion properties between tile and poly(ethylene-co-vinyl acetate, EVA, modified mortar. The bond strength results have clearly shown the improvement of adherence at the tile-polymer modified mortar interface, reflecting the overall balance of silane, cement and polymer interactions.

  6. Study of the effect of nano surface morphology on the stain-resistant property of ceramic tiles

    International Nuclear Information System (INIS)

    Pan, S P; Hung, J K; Liu, Y T

    2014-01-01

    In this study, six types of commercially available ceramic tiles, including nano-structured ceramic tiles and regular ceramic tiles, were selected to investigate the effect of surface morphology on their stain-resistant property. The stain-resistant efficiencies of various ceramic tiles with nano-size surface were measured in order to determine the appropriate method for testing ceramic tiles with nano-structure surface

  7. Coverage percentage and raman measurement of cross-tile and scaffold cross-tile based DNA nanostructures.

    Science.gov (United States)

    Gnapareddy, Bramaramba; Ahn, Sang Jung; Dugasani, Sreekantha Reddy; Kim, Jang Ah; Amin, Rashid; Mitta, Sekhar Babu; Vellampatti, Srivithya; Kim, Byeonghoon; Kulkarni, Atul; Kim, Taesung; Yun, Kyusik; LaBean, Thomas H; Park, Sung Ha

    2015-11-01

    We present two free-solution annealed DNA nanostructures consisting of either cross-tile CT1 or CT2. The proposed nanostructures exhibit two distinct structural morphologies, with one-dimensional (1D) nanotubes for CT1 and 2D nanolattices for CT2. When we perform mica-assisted growth annealing with CT1, a dramatic dimensional change occurs where the 1D nanotubes transform into 2D nanolattices due to the presence of the substrate. We assessed the coverage percentage of the 2D nanolattices grown on the mica substrate with CT1 and CT2 as a function of the concentration of the DNA monomer. Furthermore, we fabricated a scaffold cross-tile (SCT), which is a new design of a modified cross-tile that consists of four four-arm junctions with a square aspect ratio. For SCT, eight oligonucleotides are designed in such a way that adjacent strands with sticky ends can produce continuous arms in both the horizontal and vertical directions. The SCT was fabricated via free-solution annealing, and self-assembled SCT produces 2D nanolattices with periodic square cavities. All structures were observed via atomic force microscopy. Finally, we fabricated divalent nickel ion (Ni(2+))- and trivalent dysprosium ion (Dy(3+))-modified 2D nanolattices constructed with CT2 on a quartz substrate, and the ion coordinations were examined via Raman spectroscopy. Copyright © 2015 Elsevier B.V. All rights reserved.

  8. CFD analysis and experimental comparison of novel roof tile shapes

    Directory of Open Access Journals (Sweden)

    Michele Bottarelli

    2017-06-01

    Using an experimental rig, the air pressure difference and the volumetric flow rate between tiles have been measured for an existing Portoghese tile design over a range of pressures. Then, in order to understand the air flows under different conditions, a three-dimensional computational fluid dynamics (CFD model has been implemented to recreate the full geometry of the rig. The model was calibrated against the aforementioned experimental results, and run with boundary conditions simulating different wind directions. Even in the low velocities typical of average local wind patterns, the fluid dynamic problem remains complex because of the geometry of the gaps between the tiles. However, it has been possible to assess the coefficient of local head loss and then apply it in an analytical relationship between pressure drop and flow rate, taking into account the open area. The results have shown how the wind direction affects the air permeability and, therefore, important insights have been gathered for the design of novel tiles.

  9. Residual Stress Measurement of SiC tile/Al7075 Hybrid Composites by Neutron Diffraction

    Energy Technology Data Exchange (ETDEWEB)

    Park, Jong Bok; Lee, Jun Ho; Hong, Soon Hyung; Ryu, Ho Jin [KAIST, Daejeon (Korea, Republic of); Lee, Sang Bok; Lee, Sang Kwan [Korea Institute of Materials Science, Changwon (Korea, Republic of); Muslihd, M. Rifai [Center for Advanced Materials Science and Technology, Tangerang (India)

    2016-05-15

    In this research, SiC which has low density, high compressive strength, and high elastic modulus was used to fabricate the armor plate. In addition, Al which has low density and high toughness was used for a metal matrix of the composites. If two materials are combined, the composite can be effective materials for light weight armor applications. However, the existence of a large difference in coefficients of thermal expansion (CTE) between SiC and Al matrix, SiC/Al composites can have residual stresses while cooled in the fabrication process. Previous research reported that residual stresses in the composites or microstructures have an effect on the fatigue life and their mechanical properties. Some researchers reported about the residual stresses in the SiCp/Al metal matrix composites by numerical simulation systems, X-ray diffraction, and destructive methods. In order to analyze the residual stress of SiC/Al composites, the neutron diffraction as the non-destructive method was performed in this research. The 50 vol.% SiC{sub p}/Al7075 composites and SiC tile inserted 50 vol.% SiC{sub p}/Al7075 hybrid composites were measured to analyze the residual stress of Al (111) and SiC (111). Both samples had the tensile residual stresses in the Al (111) and the compressive residual stresses in the SiC (111) due to the difference in CTE.

  10. GIBS Web Map Tile Service (WMTS)

    Data.gov (United States)

    National Aeronautics and Space Administration — The WMTS implementation standard provides a standards-based solution for serviing digital maps using predefined image tiles. Through the constructs of the...

  11. Investigations on in situ diagnostics by an infrared camera to distinguish between the plasma facing tiles with carbonaceous surface layer and defect in the underneath junction

    International Nuclear Information System (INIS)

    Cai, Laizhong; Gauthier, Eric; Corre, Yann; Liu, Jian

    2013-01-01

    Both a deposition surface layer and a delamination underneath junction existing on plasma facing components (PFCs) can result in abnormal high surface temperature under normal heating conditions. The tile with delamination has to be replaced to prevent from a critical failure (complete delamination) during plasma operation while the carbon deposit can be removed without any repairing. Therefore, distinguishing in situ deposited tiles and junction defect tiles is crucial to avoid the critical failure without unwanted shutdown. In this paper, the thermal behaviors of junction defect tiles and carbon deposit tiles are simulated numerically. A modified time constant method is then introduced to analyze the thermal behaviors of deposited tiles and junction defect tiles. The feasibility of discrimination by analyzing the thermal behaviors of tiles is discussed and the requirements of this method for discrimination are described. Finally, the time resolution requirement of IR cameras to do the discrimination is mentioned

  12. Comprehensive nitrogen budgets for controlled tile drainage fields in eastern ontario, Canada.

    Science.gov (United States)

    Sunohara, M D; Craiovan, E; Topp, E; Gottschall, N; Drury, C F; Lapen, D R

    2014-03-01

    Excessive N loading from subsurface tile drainage has been linked to water quality degradation. Controlled tile drainage (CTD) has the potential to reduce N losses via tile drainage and boost crop yields. While CTD can reduce N loss from tile drainage, it may increase losses through other pathways. A multiple-year field-scale accounting of major N inputs and outputs during the cropping season was conducted on freely drained and controlled tile drained agricultural fields under corn ( L.)-soybean [ (L.) Merr.] production systems in eastern Ontario, Canada. Greater predicted gaseous N emissions for corn and soybean and greater observed lateral seepage N losses were observed for corn and soybean fields under CTD relative to free-draining fields. However, observed N losses from tile were significantly lower for CTD fields, in relation to freely drained fields. Changes in residual soil N were essentially equivalent between drainage treatments, while mass balance residual terms were systematically negative (slightly more so for CTD). Increases in plant N uptake associated with CTD were observed, probably resulting in higher grain yields for corn and soybean. This study illustrates the benefits of CTD in decreasing subsurface tile drainage N losses and boosting crop yields, while demonstrating the potential for CTD to increase N losses via other pathways related to gaseous emissions and groundwater seepage. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

  13. ATLAS tile calorimeter cesium calibration control and analysis software

    International Nuclear Information System (INIS)

    Solovyanov, O; Solodkov, A; Starchenko, E; Karyukhin, A; Isaev, A; Shalanda, N

    2008-01-01

    An online control system to calibrate and monitor ATLAS Barrel hadronic calorimeter (TileCal) with a movable radioactive source, driven by liquid flow, is described. To read out and control the system an online software has been developed, using ATLAS TDAQ components like DVS (Diagnostic and Verification System) to verify the hardware before running, IS (Information Server) for data and status exchange between networked computers, and other components like DDC (DCS to DAQ Connection), to connect to PVSS-based slow control systems of Tile Calorimeter, high voltage and low voltage. A system of scripting facilities, based on Python language, is used to handle all the calibration and monitoring processes from hardware perspective to final data storage, including various abnormal situations. A QT based graphical user interface to display the status of the calibration system during the cesium source scan is described. The software for analysis of the detector response, using online data, is discussed. Performance of the system and first experience from the ATLAS pit are presented

  14. SIGNAL RECONSTRUCTION PERFORMANCE OF THE ATLAS HADRONIC TILE CALORIMETER

    CERN Document Server

    Do Amaral Coutinho, Y; The ATLAS collaboration

    2013-01-01

    "The Tile Calorimeter for the ATLAS experiment at the CERN Large Hadron Collider (LHC) is a sampling calorimeter with steel as absorber and scintillators as active medium. The scintillators are readout by wavelength shifting fibers coupled to photomultiplier tubes (PMT). The analogue signals from the PMTs are amplified, shaped and digitized by sampling the signal every 25 ns. The TileCal front-end electronics allows to read out the signals produced by about 10000 channels measuring energies ranging from ~30 MeV to ~2 TeV. The read-out system is responsible for reconstructing the data in real-time fulfilling the tight time constraint imposed by the ATLAS first level trigger rate (100 kHz). The main component of the read-out system is the Digital Signal Processor (DSP) which, using an Optimal Filtering reconstruction algorithm, allows to compute for each channel the signal amplitude, time and quality factor at the required high rate. Currently the ATLAS detector and the LHC are undergoing an upgrade program tha...

  15. ATLAS tile calorimeter cesium calibration control and analysis software

    Energy Technology Data Exchange (ETDEWEB)

    Solovyanov, O; Solodkov, A; Starchenko, E; Karyukhin, A; Isaev, A; Shalanda, N [Institute for High Energy Physics, Protvino 142281 (Russian Federation)], E-mail: Oleg.Solovyanov@ihep.ru

    2008-07-01

    An online control system to calibrate and monitor ATLAS Barrel hadronic calorimeter (TileCal) with a movable radioactive source, driven by liquid flow, is described. To read out and control the system an online software has been developed, using ATLAS TDAQ components like DVS (Diagnostic and Verification System) to verify the hardware before running, IS (Information Server) for data and status exchange between networked computers, and other components like DDC (DCS to DAQ Connection), to connect to PVSS-based slow control systems of Tile Calorimeter, high voltage and low voltage. A system of scripting facilities, based on Python language, is used to handle all the calibration and monitoring processes from hardware perspective to final data storage, including various abnormal situations. A QT based graphical user interface to display the status of the calibration system during the cesium source scan is described. The software for analysis of the detector response, using online data, is discussed. Performance of the system and first experience from the ATLAS pit are presented.

  16. Development of a high-throughput microfluidic integrated microarray for the detection of chimeric bioweapons.

    Energy Technology Data Exchange (ETDEWEB)

    Sheppod, Timothy; Satterfield, Brent; Hukari, Kyle W.; West, Jason A. A.; Hux, Gary A.

    2006-10-01

    The advancement of DNA cloning has significantly augmented the potential threat of a focused bioweapon assault, such as a terrorist attack. With current DNA cloning techniques, toxin genes from the most dangerous (but environmentally labile) bacterial or viral organism can now be selected and inserted into robust organism to produce an infinite number of deadly chimeric bioweapons. In order to neutralize such a threat, accurate detection of the expressed toxin genes, rather than classification on strain or genealogical decent of these organisms, is critical. The development of a high-throughput microarray approach will enable the detection of unknowns chimeric bioweapons. The development of a high-throughput microarray approach will enable the detection of unknown bioweapons. We have developed a unique microfluidic approach to capture and concentrate these threat genes (mRNA's) upto a 30 fold concentration. These captured oligonucleotides can then be used to synthesize in situ oligonucleotide copies (cDNA probes) of the captured genes. An integrated microfluidic architecture will enable us to control flows of reagents, perform clean-up steps and finally elute nanoliter volumes of synthesized oligonucleotides probes. The integrated approach has enabled a process where chimeric or conventional bioweapons can rapidly be identified based on their toxic function, rather than being restricted to information that may not identify the critical nature of the threat.

  17. A digital gigapixel large-format tile-scan camera.

    Science.gov (United States)

    Ben-Ezra, M

    2011-01-01

    Although the resolution of single-lens reflex (SLR) and medium-format digital cameras has increased in recent years, applications for cultural-heritage preservation and computational photography require even higher resolutions. Addressing this issue, a large-format cameras' large image planes can achieve very high resolution without compromising pixel size and thus can provide high-quality, high-resolution images.This digital large-format tile scan camera can acquire high-quality, high-resolution images of static scenes. It employs unique calibration techniques and a simple algorithm for focal-stack processing of very large images with significant magnification variations. The camera automatically collects overlapping focal stacks and processes them into a high-resolution, extended-depth-of-field image.

  18. Improvement in the amine glass platform by bubbling method for a DNA microarray.

    Science.gov (United States)

    Jee, Seung Hyun; Kim, Jong Won; Lee, Ji Hyeong; Yoon, Young Soo

    2015-01-01

    A glass platform with high sensitivity for sexually transmitted diseases microarray is described here. An amino-silane-based self-assembled monolayer was coated on the surface of a glass platform using a novel bubbling method. The optimized surface of the glass platform had highly uniform surface modifications using this method, as well as improved hybridization properties with capture probes in the DNA microarray. On the basis of these results, the improved glass platform serves as a highly reliable and optimal material for the DNA microarray. Moreover, in this study, we demonstrated that our glass platform, manufactured by utilizing the bubbling method, had higher uniformity, shorter processing time, lower background signal, and higher spot signal than the platforms manufactured by the general dipping method. The DNA microarray manufactured with a glass platform prepared using bubbling method can be used as a clinical diagnostic tool.

  19. The PreProcessors for the ATLAS Tile Calorimeter Phase II Upgrade

    CERN Document Server

    Carrio Argos, Fernando; The ATLAS collaboration

    2015-01-01

    The Large Hadron Collider (LHC) has envisaged a series of upgrades towards a High Luminosity LHC (HL-LHC) delivering five times the LHC nominal instantaneous luminosity. The ATLAS Phase II upgrade will accommodate the detector and data acquisition system for the HL-LHC. In particular, the Tile Hadronic Calorimeter (TileCal) will replace completely on- and off-detector electronics using a new read-out architecture. The digitized detector data will be transferred for every beam crossing to the super Read Out Drivers (sRODs) located in off-detector counting rooms with a total data bandwidth of roughly 80 Tbps. The sROD implements increased pipelines memories and must provide pre-processed digital trigger information to Level 0/1 systems. The sROD module represents the link between the on-detector electronics and the overall ATLAS data acquisition system. It also implements the interface between the Detector Control System (DCS) and the on-detector electronics which is used to control and monitor the high voltage...

  20. Study of the adherence between polymer-modified mortars and porcelain stoneware tiles

    Directory of Open Access Journals (Sweden)

    Alessandra Etuko Feuzicana de Souza Almeida

    2005-09-01

    Full Text Available Despite the excellent characteristics of porcelain tiles, their application on building facades requires special attention, since this material differs from conventional ceramics and because facades are exposed to weathering that can damage ceramic revetments. The combination of polymer and silica fume to produce mortars results in excellent properties, which are ideal for repairs and revetments requiring high performance. Such improvements justify its study for the installation of porcelain tiles. This article presents bond strength results for mortars containing different amounts of polymer and silica indicating the applicability of these mortars as a construction material. To complement this study, the interface between the porcelain and the mortars was analyzed by scanning electron microscopy (SEM.

  1. Universal Reference RNA as a standard for microarray experiments

    Directory of Open Access Journals (Sweden)

    Fero Michael

    2004-03-01

    Full Text Available Abstract Background Obtaining reliable and reproducible two-color microarray gene expression data is critically important for understanding the biological significance of perturbations made on a cellular system. Microarray design, RNA preparation and labeling, hybridization conditions and data acquisition and analysis are variables difficult to simultaneously control. A useful tool for monitoring and controlling intra- and inter-experimental variation is Universal Reference RNA (URR, developed with the goal of providing hybridization signal at each microarray probe location (spot. Measuring signal at each spot as the ratio of experimental RNA to reference RNA targets, rather than relying on absolute signal intensity, decreases variability by normalizing signal output in any two-color hybridization experiment. Results Human, mouse and rat URR (UHRR, UMRR and URRR, respectively were prepared from pools of RNA derived from individual cell lines representing different tissues. A variety of microarrays were used to determine percentage of spots hybridizing with URR and producing signal above a user defined threshold (microarray coverage. Microarray coverage was consistently greater than 80% for all arrays tested. We confirmed that individual cell lines contribute their own unique set of genes to URR, arguing for a pool of RNA from several cell lines as a better configuration for URR as opposed to a single cell line source for URR. Microarray coverage comparing two separately prepared batches each of UHRR, UMRR and URRR were highly correlated (Pearson's correlation coefficients of 0.97. Conclusion Results of this study demonstrate that large quantities of pooled RNA from individual cell lines are reproducibly prepared and possess diverse gene representation. This type of reference provides a standard for reducing variation in microarray experiments and allows more reliable comparison of gene expression data within and between experiments and

  2. Retention of Hydrogen Isotopes in Divertor Tiles Used in JT-60U

    International Nuclear Information System (INIS)

    Hirohata, Y.; Shibahara, T.; Tanabe, T.; Oya, Y.; Arai, T.; Gotoh, Y.; Masaki, K.; Yagyu, J.; Oyaidzu, M.; Okuno, K.; Nishikawa, M.; Miya, N.

    2005-01-01

    Retention characteristics of deuterium and hydrogen retained in graphite tiles placed in the divertor region of JT-60U were investigated by thermal desorption spectroscopy (TDS). The deuterium retained in the near surface of all graphite tiles was mostly replaced by hydrogen due to exposure to hydrogen plasma at the final stage operations, resulting in main deuterium retention in the deeper region. The dominant species desorbed from the divertor tiles were H 2 , HD, D 2 and CH 4 . The smallest retention of hydrogen isotopes (H+D) was observed in the outer divertor tile which was eroded with maximum of 20 μm depth. The amount of H+D retained in the inner divertor tiles covered by the re-deposited layers increased with the thickness of the re-deposited layers. Hydrogen isotopes concentration ((H+D)/C) in the re-deposited layers was ∼0.02, which was much smaller than those observed in JET and other devices

  3. AIRBORNE ASBESTOS CONCENTRATIONS DURING BUFFING, BURNISHING, AND STRIPPING OF RESILIENT FLOOR TILE

    Science.gov (United States)

    The study was conducted to evaluate airborne asbestos concentrations during low-speed spray-buffing, ultra high-speed burnishing, and wet-stripping of asbestos-containing resilient floor tile under pre-existing and prepared levels of floor care maintenance. Low-speed spray-buffin...

  4. Tile drainage phosphorus loss with long-term consistent cropping systems and fertilization.

    Science.gov (United States)

    Zhang, T Q; Tan, C S; Zheng, Z M; Drury, C F

    2015-03-01

    Phosphorus (P) loss in tile drainage water may vary with agricultural practices, and the impacts are often hard to detect with short-term studies. We evaluated the effects of long-term (≥43 yr) cropping systems (continuous corn [CC], corn-oats-alfalfa-alfalfa rotation [CR], and continuous grass [CS]) and fertilization (fertilization [F] vs. no-fertilization [NF]) on P loss in tile drainage water from a clay loam soil over a 4-yr period. Compared with NF, long-term fertilization increased concentrations and losses of dissolved reactive P (DRP), dissolved unreactive P (DURP), and total P (TP) in tile drainage water, with the increments following the order: CS > CR > CC. Dissolved P (dissolved reactive P [DRP] and dissolved unreactive P [DURP]) was the dominant P form in drainage outflow, accounting for 72% of TP loss under F-CS, whereas particulate P (PP) was the major form of TP loss under F-CC (72%), F-CR (62%), NF-CS (66%), NF-CC (74%), and NF-CR (72%). Dissolved unreactive P played nearly equal roles as DRP in P losses in tile drainage water. Stepwise regression analysis showed that the concentration of P (DRP, DURP, and PP) in tile drainage flow, rather than event flow volume, was the most important factor contributing to P loss in tile drainage water, although event flow volume was more important in PP loss than in dissolved P loss. Continuous grass significantly increased P loss by increasing P concentration and flow volume of tile drainage water, especially under the fertilization treatment. Long-term grasslands may become a significant P source in tile-drained systems when they receive regular P addition. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

  5. Power handling of a segmented bulk W tile for JET under realistic plasma scenarios

    Science.gov (United States)

    Jet-Efda Contributors Mertens, Ph.; Coenen, J. W.; Eich, T.; Huber, A.; Jachmich, S.; Nicolai, D.; Riccardo, V.; Senik, K.; Samm, U.

    2011-08-01

    A solid tungsten divertor row has been designed for JET in the frame of the ITER-like Wall project (ILW). The plasma-facing tiles are segmented in four stacks of tungsten lamellae oriented in the toroidal direction. Earlier estimations of the expected tile performance were carried out mostly for engineering purposes, to compare the permissible heat load with the power density of 7 MW/m2 originally specified for the ILW as a uniform load for 10 s.The global thermal model developed for the W modules delivers results for more realistic plasma footprints: the poloidal extension of the outer strike point was reduced from the full lamella width of 62 mm to ⩾15 mm. Model validation is given by the experimental exposure of a 1:1 prototype stack in the ion beam facility MARION (incidence ˜6°, load E ⩽ 66 MJ/m2 on the wetted surface). Spreading the deposited energy by appropriate sweeping over one or several stacks in the torus is beneficial for the tungsten lamellae and for the support structure.

  6. High-Dimensional Additive Hazards Regression for Oral Squamous Cell Carcinoma Using Microarray Data: A Comparative Study

    Directory of Open Access Journals (Sweden)

    Omid Hamidi

    2014-01-01

    Full Text Available Microarray technology results in high-dimensional and low-sample size data sets. Therefore, fitting sparse models is substantial because only a small number of influential genes can reliably be identified. A number of variable selection approaches have been proposed for high-dimensional time-to-event data based on Cox proportional hazards where censoring is present. The present study applied three sparse variable selection techniques of Lasso, smoothly clipped absolute deviation and the smooth integration of counting, and absolute deviation for gene expression survival time data using the additive risk model which is adopted when the absolute effects of multiple predictors on the hazard function are of interest. The performances of used techniques were evaluated by time dependent ROC curve and bootstrap .632+ prediction error curves. The selected genes by all methods were highly significant (P<0.001. The Lasso showed maximum median of area under ROC curve over time (0.95 and smoothly clipped absolute deviation showed the lowest prediction error (0.105. It was observed that the selected genes by all methods improved the prediction of purely clinical model indicating the valuable information containing in the microarray features. So it was concluded that used approaches can satisfactorily predict survival based on selected gene expression measurements.

  7. Non-Commutative Geometrical Aspects and Topological Invariants of a Conformally Regular Pentagonal Tiling of the Plane

    DEFF Research Database (Denmark)

    Ramirez-Solano, Maria

    automatically has finite local complexity. In this thesis we give a construction of the continuous and discrete hull just from the combinatorial data. For the discrete hull we construct a C-algebra and a measure. Since this tiling possesses no natural R2 action by translation, there is no a priori reason......The article ”A regular pentagonal tiling of the plane” by Philip L. Bowers and Kenneth Stephenson defines a conformal pentagonal tiling. This is a tiling of the plane with remarkable combinatorial and geometric properties.However, it doesn’t have finite local complexity in any usual sense......, and therefore we cannot study it with the usual tiling theory. The appeal of the tiling is that all the tiles are conformally regular pentagons. But conformal maps are not allowable under finite local complexity. On the other hand, the tiling can be described completely by its combinatorial data, which rather...

  8. Estimation of Tile Drainage Contribution to Streamflow and Nutrient Export Loads

    Science.gov (United States)

    Schilling, K. E.; Arenas Amado, A.; Jones, C. S.; Weber, L. J.

    2015-12-01

    Subsurface drainage is a very common practice in the agricultural U.S. Midwest. It is typically installed in poorly drained soils in order to enhance crop yields. The presence of tile drains creates a route for agrichemicals to travel and therefore negatively impacts stream water quality. This study estimated through end-member analyses the contributions of tile drainage, groundwater, and surface runoff to streamflow at the watershed scale based on continuously monitored data. Especial attention was devoted to quantifying tile drainage impact on watershed streamflow and nutrient export loads. Data analyzed includes streamflow, rainfall, soil moisture, shallow groundwater levels, in-stream nitrate+nitrite concentrations and specific conductance. Data were collected at a HUC12 watershed located in Northeast Iowa, USA. Approximately 60% of the total watershed area is devoted to agricultural activities and forest and grassland are the other two predominant land uses. Results show that approximately 20% of total annual streamflow comes from tile drainage and during rainfall events tile drainage contribution can go up to 30%. Furthermore, for most of the analyzed rainfall events groundwater responded faster and in a more dramatic fashion than tile drainage. The State of Iowa is currently carrying out a plan to reduce nutrients in Iowa waters and the Gulf of Mexico (Iowa Nutrient Reduction Strategy). The outcome of this investigation has the potential to assist in Best Management Practice (BMP) scenario selection and therefore help the state achieve water quality goals.

  9. Deuterium depth profiling in JT-60U W-shaped divertor tiles by nuclear reaction analysis

    International Nuclear Information System (INIS)

    Hayashi, T.; Ochiai, K.; Masaki, K.; Gotoh, Y.; Kutsukake, C.; Arai, T.; Nishitani, T.; Miya, N.

    2006-01-01

    Deuterium concentrations and depth profiles in plasma-facing graphite tiles used in the divertor of JAERI Tokamak-60 Upgrade (JT-60U) were investigated by nuclear reaction analysis (NRA). The highest deuterium concentration of D/ 12 C of 0.053 was found in the outer dome wing tile, where the deuterium accumulated probably through the deuterium-carbon co-deposition. In the outer and inner divertor target tiles, the D/ 12 C data were lower than 0.006. Additionally, the maximum (H + D)/ 12 C in the dome top tile was estimated to be 0.023 from the results of NRA and secondary ion mass spectroscopy (SIMS). Orbit following Monte-Carlo (OFMC) simulation showed energetic deuterons caused by neutral beam injections (NBI) were implanted into the dome region with high heat flux. Furthermore, the surface temperature and conditions such as deposition and erosion significantly influenced the accumulation process of deuterium. The deuterium depth profile, scanning electron microscope (SEM) observation and OFMC simulation indicated the deuterium was considered to accumulate through three processes: the deuterium-carbon co-deposition, the implantation of energetic deuterons and the deuterium diffusion into the bulk

  10. Impact of Tile Drainage on the Distribution of Concentration and Age of Inorganic Soil Nitrogen.

    Science.gov (United States)

    Woo, D.; Kumar, P.

    2017-12-01

    Extensive network of tile drainage network across the Midwestern United States, northern Europe and other regions of the world have enhanced agricultural productivity. Because of its impact on sub-surface flow patterns and moisture and temperature dynamics, it controls the nitrogen cycle in agricultural systems, and its influence on nitrogen dynamics plays a key role in determining the short- and long-term evolution of soil inorganic nitrogen concentration and age. The spatial mapping of nitrogen concentration and age under tile-drained fields has, therefore, the potential to open up novel solution to the vexing challenge of reducing environmental impacts while at the same time maintaining agricultural productivity. The objective of this study is to explore the impacts of tile drains on the age dynamics of nitrate, immobile ammonium, mobile ammonia/um, and non-reactive tracer (such as chloride) by implementing two mobile interacting pore domains to capture matrix and preferential flow paths in a coupled ecohydrology and biogeochemistry model, Dhara. We applied this model to an agricultural farm supporting a corn-soybean rotation in the Midwestern United States. It should be expected that the installation of tile drains decrease the age of soil nutrient due to nutrient losses through tile drainage. However, an increase in the age of mobile ammonia/um is observed in contrast to the cases for nitrate, immobile ammonium, and non-reactive tracer. These results arise because the depletion of mobile ammonia/um due to tile drainage causes a high mobility flux from immobile ammonium to mobile ammonia/um, which also carries a considerable amount of relatively old age of immobile ammonium to mobile ammonia/um. In addition, the ages of nitrate and mobile ammonia/um in tile drainage range from 1 to 3 years, and less than a year, respectively, implying that not considering age transformations between nitrogen species would result in substantial underestimation of nitrogen ages

  11. The EADGENE Microarray Data Analysis Workshop

    DEFF Research Database (Denmark)

    de Koning, Dirk-Jan; Jaffrézic, Florence; Lund, Mogens Sandø

    2007-01-01

    Microarray analyses have become an important tool in animal genomics. While their use is becoming widespread, there is still a lot of ongoing research regarding the analysis of microarray data. In the context of a European Network of Excellence, 31 researchers representing 14 research groups from...... 10 countries performed and discussed the statistical analyses of real and simulated 2-colour microarray data that were distributed among participants. The real data consisted of 48 microarrays from a disease challenge experiment in dairy cattle, while the simulated data consisted of 10 microarrays...... statistical weights, to omitting a large number of spots or omitting entire slides. Surprisingly, these very different approaches gave quite similar results when applied to the simulated data, although not all participating groups analysed both real and simulated data. The workshop was very successful...

  12. Tiling by rectangles and alternating current

    KAUST Repository

    Prasolov, M. V.

    2011-04-01

    This paper is on tilings of polygons by rectangles. A celebrated physical interpretation of such tilings by R.L. Brooks, C.A.B. Smith, A.H. Stone and W.T. Tutte uses direct-current circuits. The new approach of this paper is an application of alternating-current circuits. The following results are obtained: •a necessary condition for a rectangle to be tilable by rectangles of given shapes;•a criterion for a rectangle to be tilable by rectangles similar to it but not all homothetic to it;•a criterion for a "generic" polygon to be tilable by squares. These results generalize those of C. Freiling, R. Kenyon, M. Laczkovich, D. Rinne, and G. Szekeres. © 2010 Elsevier Inc.

  13. Scheduling Two-Sided Transformations Using Tile Algorithms on Multicore Architectures

    Directory of Open Access Journals (Sweden)

    Hatem Ltaief

    2010-01-01

    Full Text Available The objective of this paper is to describe, in the context of multicore architectures, three different scheduler implementations for the two-sided linear algebra transformations, in particular the Hessenberg and Bidiagonal reductions which are the first steps for the standard eigenvalue problems and the singular value decompositions respectively. State-of-the-art dense linear algebra softwares, such as the LAPACK and ScaLAPACK libraries, suffer performance losses on multicore processors due to their inability to fully exploit thread-level parallelism. At the same time the fine-grain dataflow model gains popularity as a paradigm for programming multicore architectures. Buttari et al. (Parellel Comput. Syst. Appl. 35 (2009, 38–53 introduced the concept of tile algorithms in which parallelism is no longer hidden inside Basic Linear Algebra Subprograms but is brought to the fore to yield much better performance. Along with efficient scheduling mechanisms for data-driven execution, these tile two-sided reductions achieve high performance computing by reaching up to 75% of the DGEMM peak on a 12000×12000 matrix with 16 Intel Tigerton 2.4 GHz processors. The main drawback of the tile algorithms approach for two-sided transformations is that the full reduction cannot be obtained in one stage. Other methods have to be considered to further reduce the band matrices to the required forms.

  14. Machining of scintillator tiles for the SDC calorimeter

    International Nuclear Information System (INIS)

    Bertoldi, M.; Bartosz, E.; Davis, C.; Hagopian, V.; Hernandez, E.; Hu, K.; Immer, C.; Thomaston, J.

    1992-01-01

    This research and development on the grooving methods for the scintillating tiles of the SDC calorimeter was done to maximize the light output of scintillator plates and improve the uniformity among tiles through machining procedures. Grooves for wavelength shifting fibers in SCSN-81 can be machined from 10,000 to 60,000 RPM with a feed rate of more than 30cm/min if the plate is kept cool and the chips are removed quickly by blowing dry, cold, clean air over the cutting tool. BC499-27, a polystyrene-based scintillator, is softer and more difficult to machine. It allows a maximum rotation speed of 20,000 RPM and a maximum feed rate of 15 cm/min. A new half-keyhole shape was used for grooves, allowing safer, faster top-loading of the fibers. Three hundred tiles were machined, achieving a standard deviation of the light output of less than 7%. (Author)

  15. Inflation and wavelets for the icosahedral Danzer tiling

    International Nuclear Information System (INIS)

    Kramer, Peter; Andrle, Miroslav

    2004-01-01

    The distribution of atoms in quasi-crystals lacks periodicity and displays point symmetry associated with non-crystallographic modules. Often it can be described by quasi-periodic tilings on R 3 built from a finite number of prototiles. The modules and the canonical tilings of five-fold and icosahedral point symmetry admit inflation symmetry. In the simplest case of stone inflation, any prototile when scaled by the golden section number τ can be packed from unscaled prototiles. Observables supported on R 3 for quasi-crystals require symmetry-adapted function spaces. We construct wavelet bases on R 3 for the icosahedral Danzer tiling. The stone inflation of the four Danzer prototiles is given explicitly in terms of Euclidean group operations acting on R 3 . By acting with the unitary representations inverse to these operations on the characteristic functions of the prototiles, we recursively provide a full orthogonal wavelet basis of R 3 . It incorporates the icosahedral and inflation symmetry

  16. Tile Drainage Management Influences on Surface-Water and Groundwater Quality following Liquid Manure Application.

    Science.gov (United States)

    Frey, Steven K; Topp, Ed; Ball, Bonnie R; Edwards, Mark; Gottschall, Natalie; Sunohara, Mark; Zoski, Erin; Lapen, David R

    2013-01-01

    This study investigated the potential for controlled tile drainage (CD) to reduce bacteria and nutrient loading to surface water and groundwater from fall-season liquid manure application (LMA) on four macroporous clay loam plots, of which two had CD and two had free-draining (FD) tiles. Rhodamine WT (RWT) was mixed into the manure and monitored in the tile water and groundwater following LMA. Tile water and groundwater quality were influenced by drainage management. Following LMA on the FD plots, RWT, nutrients, and bacteria moved rapidly via tiles to surface water; at the CD plots, tiles did not flow until the first post-LMA rainfall, so the immediate risk of LMA-induced contamination of surface water was abated. During the 36-d monitoring period, flow-weighted average specific conductance, redox potential, and turbidity, as well as total Kjeldahl N (TKN), total P (TP), NH-N, reactive P, and RWT concentrations, were higher in the CD tile effluent; however, because of lower tile discharge from the CD plots, there was no significant ( ≤ 0.05) difference in surface water nutrient and RWT loading between the CD and FD plots when all tiles were flowing. The TKN, TP, and RWT concentrations in groundwater also tended to be higher at the CD plots. Bacteria behaved differently than nutrients and RWT, with no significant difference in total coliform, , fecal coliform, fecal streptococcus, and concentrations between the CD and FD tile effluent; however, for all but , hourly loading was higher from the FD plots. Results indicate that CD has potential for mitigating bacteria movement to surface water. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

  17. Elastic-plastic-creep analysis of brazed carbon-carbon/OFHC divertor tile concepts for TPX

    International Nuclear Information System (INIS)

    Chin, E.; Reis, E.E.

    1995-01-01

    The 7.5 MW/m 2 heat flux requirements for the TPX divertor necessitate the use of high conductivity carbon-carbon (C-C) tiles that are brazed to annealed copper (OFHC) coolant tubes. Significant residual stresses are developed in the C-C tiles during the braze process due to large differences in the thermal expansion coefficients between these materials. Analyses which account for only the elastic-plastic strains developed in the OFHC tube may not accurately characterize the behavior of the tube during brazing. The elevated temperature creep behavior of the copper coolant tubes intuitively should reduce the calculated residual stresses in the C-C tiles. Two divertor tile concepts, the monoblock and the archblock, were analyzed for residual stress using 2-D finite element analysis for elastic-plastic-creep behavior of the OFHC tube during an assumed braze cooldown cycle. The results show that the inclusion of elevated temperature creep effects decrease the calculated residual stresses by only about 10% when compared to those analyses in which only elastic-plastic behavior of the OFHC is accounted for. The primary reason that creep effects at higher temperatures are not more significant is due to the low yield stress and nearly flat-top stress-strain curve of annealed OFHC. Since high temperature creep plays less of a role in the residual stress levels than previously thought, future scoping studies can be done in an elastic-plastic analysis with confidence that the stresses will be within approximately 10% of an elastic-plastic-creep analysis

  18. Thermal load resistance of erosion-monitoring beryllium maker tile for JET ITER like wall project

    International Nuclear Information System (INIS)

    Hirai, T.; Linke, J.; Sundelin, P.; Rubel, M.; Coad, J.P.; Matthews, G.F.; Lungu, C.P.

    2007-01-01

    The ITER reference materials, beryllium (Be), carbon fibre composite (CFC) and tungsten (W), have been tested separately in tokamaks. An integrated test demonstrating both compatibility of metal plasma facing components with high-power operation and acceptable tritium retention has not yet been carried out. At JET, the size, magnetic field strength and high plasma current allow to conducting tests with the combination of the materials. Thus, the ITER-like Wall (ILW) project has been launched. In the project, Be will be the plasmafacing material on the main chamber wall of JET. To assess the erosion of the Be tiles, a Be marker tile was proposed and designed. The test samples which simulate the JET Be marker tile have been produced in MEdC, Romania in order to study the thermal load resistance of the JET Be marker (20 x 20 mm 2 size with 30 mm height). The marker tile sample consists of bulk Be, high-Z interlayer (2-3 μm Ni coating) and 8-9 μm Be coating. Thermionic Vacuum Arc (TVA) techniques based on the electron-induced evaporation have been selected for this purpose. In the present work, the global characterization of the maker tile samples and thermal load tests were performed. After the pre-characterization (microstructure observation by scanning electron microscope and elemental analysis by means of Wavelength Dispersive X-ray Spectroscopy and Energy Dispersive X-ray Spectroscopy), the thermal loading tests were performed in the electron beam facility JUDITH. The coating consisted of tiny platelets of ∝0.1 um in diameter and localized larger platelets of 1 um in diameter. The surface and bulk temperature were observed during the tests. In the screening thermal load test, the samples were loaded to 6 MW/m 2 for 10 s. The layers did not show any macroscopic damages at up to 4.5 MW/m 2 for 10 s (45 MJ/m 2 ). However, the coating delaminated and the maker was damaged when the thermal loading reached at 5 MW/m 2 (∝50 MJ/m 2 ). Cyclic heat load tests were

  19. Cellular Uptake of Tile-Assembled DNA Nanotubes.

    Science.gov (United States)

    Kocabey, Samet; Meinl, Hanna; MacPherson, Iain S; Cassinelli, Valentina; Manetto, Antonio; Rothenfusser, Simon; Liedl, Tim; Lichtenegger, Felix S

    2014-12-30

    DNA-based nanostructures have received great attention as molecular vehicles for cellular delivery of biomolecules and cancer drugs. Here, we report on the cellular uptake of tubule-like DNA tile-assembled nanostructures 27 nm in length and 8 nm in diameter that carry siRNA molecules, folic acid and fluorescent dyes. In our observations, the DNA structures are delivered to the endosome and do not reach the cytosol of the GFP -expressing HeLa cells that were used in the experiments. Consistent with this observation, no elevated silencing of the GFP gene could be detected. Furthermore, the presence of up to six molecules of folic acid on the carrier surface did not alter the uptake behavior and gene silencing. We further observed several challenges that have to be considered when performing in vitro and in vivo experiments with DNA structures: (i) DNA tile tubes consisting of 42 nt-long oligonucleotides and carrying single- or double-stranded extensions degrade within one hour in cell medium at 37 °C, while the same tubes without extensions are stable for up to eight hours. The degradation is caused mainly by the low concentration of divalent ions in the media. The lifetime in cell medium can be increased drastically by employing DNA tiles that are 84 nt long. (ii) Dyes may get cleaved from the oligonucleotides and then accumulate inside the cell close to the mitochondria, which can lead to misinterpretation of data generated by flow cytometry and fluorescence microscopy. (iii) Single-stranded DNA carrying fluorescent dyes are internalized at similar levels as the DNA tile-assembled tubes used here.

  20. Recycling of Malaysia's electric arc furnace (EAF) slag waste into heavy-duty green ceramic tile.

    Science.gov (United States)

    Teo, Pao-Ter; Anasyida, Abu Seman; Basu, Projjal; Nurulakmal, Mohd Sharif

    2014-12-01

    flexural strength, lowest apparent porosity and water absorption of EAF slag based tile was attained at the composition of 40 wt.% EAF slag--30 wt.% ball clay--10 wt.% feldspar--20 wt.% silica. The properties of ceramic tile made with EAF slag waste (up to 40 wt.%), especially flexural strength are comparable to those of commercial ceramic tile and are, therefore, suitable as high flexural strength and heavy-duty green ceramic floor tile. Continuous development is currently underway to improve the properties of tile so that this recycling approach could be one of the potential effective, efficient and sustainable solutions in sustaining our nature. Copyright © 2014 Elsevier Ltd. All rights reserved.