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Sample records for hierarchical regulatory system

  1. HIDEN: Hierarchical decomposition of regulatory networks

    Directory of Open Access Journals (Sweden)

    Gülsoy Günhan

    2012-09-01

    Full Text Available Abstract Background Transcription factors regulate numerous cellular processes by controlling the rate of production of each gene. The regulatory relations are modeled using transcriptional regulatory networks. Recent studies have shown that such networks have an underlying hierarchical organization. We consider the problem of discovering the underlying hierarchy in transcriptional regulatory networks. Results We first transform this problem to a mixed integer programming problem. We then use existing tools to solve the resulting problem. For larger networks this strategy does not work due to rapid increase in running time and space usage. We use divide and conquer strategy for such networks. We use our method to analyze the transcriptional regulatory networks of E. coli, H. sapiens and S. cerevisiae. Conclusions Our experiments demonstrate that: (i Our method gives statistically better results than three existing state of the art methods; (ii Our method is robust against errors in the data and (iii Our method’s performance is not affected by the different topologies in the data.

  2. HDS: Hierarchical Data System

    Science.gov (United States)

    Pearce, Dave; Walter, Anton; Lupton, W. F.; Warren-Smith, Rodney F.; Lawden, Mike; McIlwrath, Brian; Peden, J. C. M.; Jenness, Tim; Draper, Peter W.

    2015-02-01

    The Hierarchical Data System (HDS) is a file-based hierarchical data system designed for the storage of a wide variety of information. It is particularly suited to the storage of large multi-dimensional arrays (with their ancillary data) where efficient access is needed. It is a key component of the Starlink software collection (ascl:1110.012) and is used by the Starlink N-Dimensional Data Format (NDF) library (ascl:1411.023). HDS organizes data into hierarchies, broadly similar to the directory structure of a hierarchical filing system, but contained within a single HDS container file. The structures stored in these files are self-describing and flexible; HDS supports modification and extension of structures previously created, as well as functions such as deletion, copying, and renaming. All information stored in HDS files is portable between the machines on which HDS is implemented. Thus, there are no format conversion problems when moving between machines. HDS can write files in a private binary format (version 4), or be layered on top of HDF5 (version 5).

  3. Genomic analysis of the hierarchical structure of regulatory networks

    Science.gov (United States)

    Yu, Haiyuan; Gerstein, Mark

    2006-01-01

    A fundamental question in biology is how the cell uses transcription factors (TFs) to coordinate the expression of thousands of genes in response to various stimuli. The relationships between TFs and their target genes can be modeled in terms of directed regulatory networks. These relationships, in turn, can be readily compared with commonplace “chain-of-command” structures in social networks, which have characteristic hierarchical layouts. Here, we develop algorithms for identifying generalized hierarchies (allowing for various loop structures) and use these approaches to illuminate extensive pyramid-shaped hierarchical structures existing in the regulatory networks of representative prokaryotes (Escherichia coli) and eukaryotes (Saccharomyces cerevisiae), with most TFs at the bottom levels and only a few master TFs on top. These masters are situated near the center of the protein–protein interaction network, a different type of network from the regulatory one, and they receive most of the input for the whole regulatory hierarchy through protein interactions. Moreover, they have maximal influence over other genes, in terms of affecting expression-level changes. Surprisingly, however, TFs at the bottom of the regulatory hierarchy are more essential to the viability of the cell. Finally, one might think master TFs achieve their wide influence through directly regulating many targets, but TFs with most direct targets are in the middle of the hierarchy. We find, in fact, that these midlevel TFs are “control bottlenecks” in the hierarchy, and this great degree of control for “middle managers” has parallels in efficient social structures in various corporate and governmental settings. PMID:17003135

  4. Hierarchical structure of biological systems

    Science.gov (United States)

    Alcocer-Cuarón, Carlos; Rivera, Ana L; Castaño, Victor M

    2014-01-01

    A general theory of biological systems, based on few fundamental propositions, allows a generalization of both Wierner and Berthalanffy approaches to theoretical biology. Here, a biological system is defined as a set of self-organized, differentiated elements that interact pair-wise through various networks and media, isolated from other sets by boundaries. Their relation to other systems can be described as a closed loop in a steady-state, which leads to a hierarchical structure and functioning of the biological system. Our thermodynamical approach of hierarchical character can be applied to biological systems of varying sizes through some general principles, based on the exchange of energy information and/or mass from and within the systems. PMID:24145961

  5. Analysis hierarchical model for discrete event systems

    Science.gov (United States)

    Ciortea, E. M.

    2015-11-01

    The This paper presents the hierarchical model based on discrete event network for robotic systems. Based on the hierarchical approach, Petri network is analysed as a network of the highest conceptual level and the lowest level of local control. For modelling and control of complex robotic systems using extended Petri nets. Such a system is structured, controlled and analysed in this paper by using Visual Object Net ++ package that is relatively simple and easy to use, and the results are shown as representations easy to interpret. The hierarchical structure of the robotic system is implemented on computers analysed using specialized programs. Implementation of hierarchical model discrete event systems, as a real-time operating system on a computer network connected via a serial bus is possible, where each computer is dedicated to local and Petri model of a subsystem global robotic system. Since Petri models are simplified to apply general computers, analysis, modelling, complex manufacturing systems control can be achieved using Petri nets. Discrete event systems is a pragmatic tool for modelling industrial systems. For system modelling using Petri nets because we have our system where discrete event. To highlight the auxiliary time Petri model using transport stream divided into hierarchical levels and sections are analysed successively. Proposed robotic system simulation using timed Petri, offers the opportunity to view the robotic time. Application of goods or robotic and transmission times obtained by measuring spot is obtained graphics showing the average time for transport activity, using the parameters sets of finished products. individually.

  6. Identifying time-delayed gene regulatory networks via an evolvable hierarchical recurrent neural network.

    Science.gov (United States)

    Kordmahalleh, Mina Moradi; Sefidmazgi, Mohammad Gorji; Harrison, Scott H; Homaifar, Abdollah

    2017-01-01

    The modeling of genetic interactions within a cell is crucial for a basic understanding of physiology and for applied areas such as drug design. Interactions in gene regulatory networks (GRNs) include effects of transcription factors, repressors, small metabolites, and microRNA species. In addition, the effects of regulatory interactions are not always simultaneous, but can occur after a finite time delay, or as a combined outcome of simultaneous and time delayed interactions. Powerful biotechnologies have been rapidly and successfully measuring levels of genetic expression to illuminate different states of biological systems. This has led to an ensuing challenge to improve the identification of specific regulatory mechanisms through regulatory network reconstructions. Solutions to this challenge will ultimately help to spur forward efforts based on the usage of regulatory network reconstructions in systems biology applications. We have developed a hierarchical recurrent neural network (HRNN) that identifies time-delayed gene interactions using time-course data. A customized genetic algorithm (GA) was used to optimize hierarchical connectivity of regulatory genes and a target gene. The proposed design provides a non-fully connected network with the flexibility of using recurrent connections inside the network. These features and the non-linearity of the HRNN facilitate the process of identifying temporal patterns of a GRN. Our HRNN method was implemented with the Python language. It was first evaluated on simulated data representing linear and nonlinear time-delayed gene-gene interaction models across a range of network sizes and variances of noise. We then further demonstrated the capability of our method in reconstructing GRNs of the Saccharomyces cerevisiae synthetic network for in vivo benchmarking of reverse-engineering and modeling approaches (IRMA). We compared the performance of our method to TD-ARACNE, HCC-CLINDE, TSNI and ebdbNet across different network

  7. Complex Evaluation of Hierarchically-Network Systems

    CERN Document Server

    Polishchuk, Dmytro; Yadzhak, Mykhailo

    2016-01-01

    Methods of complex evaluation based on local, forecasting, aggregated, and interactive evaluation of the state, function quality, and interaction of complex system's objects on the all hierarchical levels is proposed. Examples of analysis of the structural elements of railway transport system are used for illustration of efficiency of proposed approach.

  8. DC Hierarchical Control System for Microgrid Applications

    OpenAIRE

    Lu, Xiaonan; Sun, Kai; Guerrero, Josep M.; Huang, Lipei

    2013-01-01

    In order to enhance the DC side performance of AC-DC hybrid microgrid,a DC hierarchical control system is proposed in this paper.To meet the requirement of DC load sharing between the parallel power interfaces,droop method is adopted.Meanwhile,DC voltage secondary control is employed to restore the deviation in the DC bus voltage.The hierarchical control system is composed of two levels.DC voltage and AC current controllers are achieved in the primary control level.

  9. Bottom-up GGM algorithm for constructing multiple layered hierarchical gene regulatory networks

    Science.gov (United States)

    Multilayered hierarchical gene regulatory networks (ML-hGRNs) are very important for understanding genetics regulation of biological pathways. However, there are currently no computational algorithms available for directly building ML-hGRNs that regulate biological pathways. A bottom-up graphic Gaus...

  10. Hierarchical Self-organization of Complex Systems

    Institute of Scientific and Technical Information of China (English)

    CHAI Li-he; WEN Dong-sheng

    2004-01-01

    Researches on organization and structure in complex systems are academic and industrial fronts in modern sciences. Though many theories are tentatively proposed to analyze complex systems, we still lack a rigorous theory on them. Complex systems possess various degrees of freedom, which means that they should exhibit all kinds of structures. However, complex systems often show similar patterns and structures. Then the question arises why such similar structures appear in all kinds of complex systems. The paper outlines a theory on freedom degree compression and the existence of hierarchical self-organization for all complex systems is found. It is freedom degree compression and hierarchical self-organization that are responsible for the existence of these similar patterns or structures observed in the complex systems.

  11. Formalizing a Hierarchical File System

    NARCIS (Netherlands)

    Hesselink, Wim H.; Lali, M.I.

    2009-01-01

    In this note, we define an abstract file system as a partial function from (absolute) paths to data. Such a file system determines the set of valid paths. It allows the file system to be read and written at a valid path, and it allows the system to be modified by the Unix operations for removal (rm)

  12. Formalizing a hierarchical file system

    NARCIS (Netherlands)

    Hesselink, Wim H.; Lali, Muhammad Ikram

    2012-01-01

    An abstract file system is defined here as a partial function from (absolute) paths to data. Such a file system determines the set of valid paths. It allows the file system to be read and written at a valid path, and it allows the system to be modified by the Unix operations for creation, removal, a

  13. Hierarchical Scaling in Systems of Natural Cities

    CERN Document Server

    Chen, Yanguang

    2016-01-01

    Hierarchies can be modeled by a set of exponential functions, from which we can derive a set of power laws indicative of scaling. These scaling laws are followed by many natural and social phenomena such as cities, earthquakes, and rivers. This paper is devoted to revealing the scaling patterns in systems of natural cities by reconstructing the hierarchy with cascade structure. The cities of America, Britain, France, and Germany are taken as examples to make empirical analyses. The hierarchical scaling relations can be well fitted to the data points within the scaling ranges of the size and area of the natural cities. The size-number and area-number scaling exponents are close to 1, and the allometric scaling exponent is slightly less than 1. The results suggest that natural cities follow hierarchical scaling laws and hierarchical conservation law. Zipf's law proved to be one of the indications of the hierarchical scaling, and the primate law of city-size distribution represents a local pattern and can be mer...

  14. Regulatory switches for hierarchical use of carbon sources in E. coli

    Directory of Open Access Journals (Sweden)

    Ruth S. Perez-Alfaro

    2014-09-01

    Full Text Available In this work we study the preferential use of carbon sources in the bacterium Escherichia coli. To that end we engineered transcriptional fusions of the reporter gene gfpmut2, downstream of transcription-factor promoters, and analyzed their activity under several conditions. The chosen transcription factors are known to regulate catabolic operons associated to the consumption of alternative sugars. The obtained results indicate the following hierarchical order of sugar preference in this bacterium: glucose > arabinose > sorbitol > galactose. Further dynamical results allowed us to conjecture that this hierarchical behavior might be operated by at least the following three regulatory strategies: 1 the coordinated activation of the corresponding operons by the global regulator catabolic repressor protein (CRP, 2 their asymmetrical responses to specific and unspecific sugars and, 3 the architecture of the associated gene regulatory networks.

  15. Secular Evolution of Hierarchical Triple Star Systems

    CERN Document Server

    Ford, E B; Kozinsky, B

    1999-01-01

    We derive octupole-level secular perturbation equations for hierarchical triple systems, using classical Hamiltonian perturbation techniques. Our equations describe the secular evolution of the orbital eccentricities and inclinations over timescales long compared to the orbital periods. By extending previous work done to leading (quadrupole) order to octupole level (i.e., including terms of order $\\alpha^3$, where $\\alpha\\equiv a_1/a_2<1$ is the ratio of semimajor axes) we obtain expressions that are applicable to a much wider range of parameters. For triple systems containing a close inner binary, we also discuss the possible interaction between the classical Newtonian perturbations and the general relativistic precession of the inner orbit. In some cases we show that this interaction can lead to resonances and a significant increase in the maximum amplitude of eccentricity perturbations. We establish the validity of our analytic expressions by providing detailed comparisons with the results of direct num...

  16. Optimization of Hierarchical System for Data Acquisition

    Directory of Open Access Journals (Sweden)

    V. Novotny

    2011-04-01

    Full Text Available Television broadcasting over IP networks (IPTV is one of a number of network applications that are except of media distribution also interested in data acquisition from group of information resources of variable size. IP-TV uses Real-time Transport Protocol (RTP protocol for media streaming and RTP Control Protocol (RTCP protocol for session quality feedback. Other applications, for example sensor networks, have data acquisition as the main task. Current solutions have mostly problem with scalability - how to collect and process information from large amount of end nodes quickly and effectively? The article deals with optimization of hierarchical system of data acquisition. Problem is mathematically described, delay minima are searched and results are proved by simulations.

  17. Secular Evolution of Hierarchical Triple Star Systems

    Science.gov (United States)

    Ford, Eric B.; Kozinsky, Boris; Rasio, Frederic A.

    2000-05-01

    We derive octupole-level secular perturbation equations for hierarchical triple systems, using classical Hamiltonian perturbation techniques. Our equations describe the secular evolution of the orbital eccentricities and inclinations over timescales that are long compared to the orbital periods. By extending previous work done to leading (quadrupole) order to octupole level (i.e., including terms of order α3, where α≡a1/a2quadrupole-level theory of Kozai gives a vanishing result in the limit of zero relative inclination. The classical planetary perturbation theory, while valid to all orders in α, applies only to orbits of low-mass objects orbiting a common central mass, with low eccentricities and low relative inclinations. For triple systems containing a close inner binary, we also discuss the possible interaction between the classical Newtonian perturbations and the general relativistic precession of the inner orbit. In some cases we show that this interaction can lead to resonances and a significant increase in the maximum amplitude of eccentricity perturbations. We establish the validity of our analytic expressions by providing detailed comparisons with the results of direct numerical integrations of the three-body problem obtained for a large number of representative cases. In addition, we show that our expressions reduce correctly to previously published analytic results obtained in various limiting regimes. We also discuss applications of the theory in the context of several observed triple systems of current interest, including the millisecond pulsar PSR B1620-26 in M4, the giant planet in 16 Cygni, and the protostellar binary TMR-1.

  18. Fractal Analysis Based on Hierarchical Scaling in Complex Systems

    CERN Document Server

    Chen, Yanguang

    2016-01-01

    A fractal is in essence a hierarchy with cascade structure, which can be described with a set of exponential functions. From these exponential functions, a set of power laws indicative of scaling can be derived. Hierarchy structure and spatial network proved to be associated with one another. This paper is devoted to exploring the theory of fractal analysis of complex systems by means of hierarchical scaling. Two research methods are utilized to make this study, including logic analysis method and empirical analysis method. The main results are as follows. First, a fractal system such as Cantor set is described from the hierarchical angle of view; based on hierarchical structure, three approaches are proposed to estimate fractal dimension. Second, the hierarchical scaling can be generalized to describe multifractals, fractal complementary sets, and self-similar curve such as logarithmic spiral. Third, complex systems such as urban system are demonstrated to be a self-similar hierarchy. The human settlements i...

  19. Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach

    Directory of Open Access Journals (Sweden)

    Buer Jan

    2004-12-01

    Full Text Available Abstract Background Cellular functions are coordinately carried out by groups of genes forming functional modules. Identifying such modules in the transcriptional regulatory network (TRN of organisms is important for understanding the structure and function of these fundamental cellular networks and essential for the emerging modular biology. So far, the global connectivity structure of TRN has not been well studied and consequently not applied for the identification of functional modules. Moreover, network motifs such as feed forward loop are recently proposed to be basic building blocks of TRN. However, their relationship to functional modules is not clear. Results In this work we proposed a top-down approach to identify modules in the TRN of E. coli. By studying the global connectivity structure of the regulatory network, we first revealed a five-layer hierarchical structure in which all the regulatory relationships are downward. Based on this regulatory hierarchy, we developed a new method to decompose the regulatory network into functional modules and to identify global regulators governing multiple modules. As a result, 10 global regulators and 39 modules were identified and shown to have well defined functions. We then investigated the distribution and composition of the two basic network motifs (feed forward loop and bi-fan motif in the hierarchical structure of TRN. We found that most of these network motifs include global regulators, indicating that these motifs are not basic building blocks of modules since modules should not contain global regulators. Conclusion The transcriptional regulatory network of E. coli possesses a multi-layer hierarchical modular structure without feedback regulation at transcription level. This hierarchical structure builds the basis for a new and simple decomposition method which is suitable for the identification of functional modules and global regulators in the transcriptional regulatory network of E

  20. SORM applied to hierarchical parallel system

    DEFF Research Database (Denmark)

    Ditlevsen, Ove Dalager

    2006-01-01

    The old hierarchical stochastic load combination model of Ferry Borges and Castanheta and the corresponding problem of determining the distribution of the extreme random load effect is the inspiration to this paper. The evaluation of the distribution function of the extreme value by use of a part......The old hierarchical stochastic load combination model of Ferry Borges and Castanheta and the corresponding problem of determining the distribution of the extreme random load effect is the inspiration to this paper. The evaluation of the distribution function of the extreme value by use...... of a particular first order reliability method (FORM) was first described in a celebrated paper by Rackwitz and Fiessler more than a quarter of a century ago. The method has become known as the Rackwitz-Fiessler algorithm. The original RF-algorithm as applied to a hierarchical random variable model...... is recapitulated so that a simple but quite effective accuracy improving calculation can be explained. A limit state curvature correction factor on the probability approximation is obtained from the final stop results of the RF-algorithm. This correction factor is based on Breitung’s asymptotic formula for second...

  1. Hierarchical robust nonlinear switching control design for propulsion systems

    Science.gov (United States)

    Leonessa, Alexander

    1999-09-01

    The desire for developing an integrated control system- design methodology for advanced propulsion systems has led to significant activity in modeling and control of flow compression systems in recent years. In this dissertation we develop a novel hierarchical switching control framework for addressing the compressor aerodynamic instabilities of rotating stall and surge. The proposed control framework accounts for the coupling between higher-order modes while explicitly addressing actuator rate saturation constraints and system modeling uncertainty. To develop a hierarchical nonlinear switching control framework, first we develop generalized Lyapunov and invariant set theorems for nonlinear dynamical systems wherein all regularity assumptions on the Lyapunov function and the system dynamics are removed. In particular, local and global stability theorems are given using lower semicontinuous Lyapunov functions. Furthermore, generalized invariant set theorems are derived wherein system trajectories converge to a union of largest invariant sets contained in intersections over finite intervals of the closure of generalized Lyapunov level surfaces. The proposed results provide transparent generalizations to standard Lyapunov and invariant set theorems. Using the generalized Lyapunov and invariant set theorems, a nonlinear control-system design framework predicated on a hierarchical switching controller architecture parameterized over a set of moving system equilibria is developed. Specifically, using equilibria- dependent Lyapunov functions, a hierarchical nonlinear control strategy is developed that stabilizes a given nonlinear system by stabilizing a collection of nonlinear controlled subsystems. The switching nonlinear controller architecture is designed based on a generalized lower semicontinuous Lyapunov function obtained by minimizing a potential function over a given switching set induced by the parameterized system equilibria. The proposed framework provides a

  2. Recursive random forest algorithm for constructing multilayered hierarchical gene regulatory networks that govern biological pathways

    Science.gov (United States)

    Zhang, Kui; Busov, Victor; Wei, Hairong

    2017-01-01

    Background Present knowledge indicates a multilayered hierarchical gene regulatory network (ML-hGRN) often operates above a biological pathway. Although the ML-hGRN is very important for understanding how a pathway is regulated, there is almost no computational algorithm for directly constructing ML-hGRNs. Results A backward elimination random forest (BWERF) algorithm was developed for constructing the ML-hGRN operating above a biological pathway. For each pathway gene, the BWERF used a random forest model to calculate the importance values of all transcription factors (TFs) to this pathway gene recursively with a portion (e.g. 1/10) of least important TFs being excluded in each round of modeling, during which, the importance values of all TFs to the pathway gene were updated and ranked until only one TF was remained in the list. The above procedure, termed BWERF. After that, the importance values of a TF to all pathway genes were aggregated and fitted to a Gaussian mixture model to determine the TF retention for the regulatory layer immediately above the pathway layer. The acquired TFs at the secondary layer were then set to be the new bottom layer to infer the next upper layer, and this process was repeated until a ML-hGRN with the expected layers was obtained. Conclusions BWERF improved the accuracy for constructing ML-hGRNs because it used backward elimination to exclude the noise genes, and aggregated the individual importance values for determining the TFs retention. We validated the BWERF by using it for constructing ML-hGRNs operating above mouse pluripotency maintenance pathway and Arabidopsis lignocellulosic pathway. Compared to GENIE3, BWERF showed an improvement in recognizing authentic TFs regulating a pathway. Compared to the bottom-up Gaussian graphical model algorithm we developed for constructing ML-hGRNs, the BWERF can construct ML-hGRNs with significantly reduced edges that enable biologists to choose the implicit edges for experimental

  3. Big Data Processing in Complex Hierarchical Network Systems

    CERN Document Server

    Polishchuk, Olexandr; Tyutyunnyk, Maria; Yadzhak, Mykhailo

    2016-01-01

    This article covers the problem of processing of Big Data that describe process of complex networks and network systems operation. It also introduces the notion of hierarchical network systems combination into associations and conglomerates alongside with complex networks combination into multiplexes. The analysis is provided for methods of global network structures study depending on the purpose of the research. Also the main types of information flows in complex hierarchical network systems being the basic components of associations and conglomerates are covered. Approaches are proposed for creation of efficient computing environments, distributed computations organization and information processing methods parallelization at different levels of system hierarchy.

  4. Hierarchical Policy Model for Managing Heterogeneous Security Systems

    Science.gov (United States)

    Lee, Dong-Young; Kim, Minsoo

    2007-12-01

    The integrated security management becomes increasingly complex as security manager must take heterogeneous security systems, different networking technologies, and distributed applications into consideration. The task of managing these security systems and applications depends on various systems and vender specific issues. In this paper, we present a hierarchical policy model which are derived from the conceptual policy, and specify means to enforce this behavior. The hierarchical policy model consist of five levels which are conceptual policy level, goal-oriented policy level, target policy level, process policy level and low-level policy.

  5. A novel load balancing method for hierarchical federation simulation system

    Science.gov (United States)

    Bin, Xiao; Xiao, Tian-yuan

    2013-07-01

    In contrast with single HLA federation framework, hierarchical federation framework can improve the performance of large-scale simulation system in a certain degree by distributing load on several RTI. However, in hierarchical federation framework, RTI is still the center of message exchange of federation, and it is still the bottleneck of performance of federation, the data explosion in a large-scale HLA federation may cause overload on RTI, It may suffer HLA federation performance reduction or even fatal error. Towards this problem, this paper proposes a load balancing method for hierarchical federation simulation system based on queuing theory, which is comprised of three main module: queue length predicting, load controlling policy, and controller. The method promotes the usage of resources of federate nodes, and improves the performance of HLA simulation system with balancing load on RTIG and federates. Finally, the experiment results are presented to demonstrate the efficient control of the method.

  6. A hierarchical architecture for an energy management system

    NARCIS (Netherlands)

    Piotrowski, Krzysztof; Casaca, Augusto; Gerards, Marco E.T.; Jongerden, Marijn; Melo, Francisco; Garrido, Daniel; Geers, Marcel; Peralta, Jacoba

    2016-01-01

    This paper introduces an innovative energy management system architecture for Smart Grids, designed in the European 7th framework program project e-balance. The architecture is hierarchical and fractal-like, which results in better scalability and reuse of algorithms and programming code for energy

  7. Nonlinear robust hierarchical control for nonlinear uncertain systems

    Directory of Open Access Journals (Sweden)

    Leonessa Alexander

    1999-01-01

    Full Text Available A nonlinear robust control-system design framework predicated on a hierarchical switching controller architecture parameterized over a set of moving nominal system equilibria is developed. Specifically, using equilibria-dependent Lyapunov functions, a hierarchical nonlinear robust control strategy is developed that robustly stabilizes a given nonlinear system over a prescribed range of system uncertainty by robustly stabilizing a collection of nonlinear controlled uncertain subsystems. The robust switching nonlinear controller architecture is designed based on a generalized (lower semicontinuous Lyapunov function obtained by minimizing a potential function over a given switching set induced by the parameterized nominal system equilibria. The proposed framework robustly stabilizes a compact positively invariant set of a given nonlinear uncertain dynamical system with structured parametric uncertainty. Finally, the efficacy of the proposed approach is demonstrated on a jet engine propulsion control problem with uncertain pressure-flow map data.

  8. Hierarchical structure of biological systems: A bioengineering approach

    OpenAIRE

    Alcocer-Cuarón, Carlos; Rivera, Ana L; Castaño, Victor M.

    2013-01-01

    A general theory of biological systems, based on few fundamental propositions, allows a generalization of both Wierner and Berthalanffy approaches to theoretical biology. Here, a biological system is defined as a set of self-organized, differentiated elements that interact pair-wise through various networks and media, isolated from other sets by boundaries. Their relation to other systems can be described as a closed loop in a steady-state, which leads to a hierarchical structure and function...

  9. Automatic and Hierarchical Verification for Concurrent Systems

    Institute of Scientific and Technical Information of China (English)

    赵旭东; 冯玉琳

    1990-01-01

    Proving correctness of concurrent systems is quite difficult because of the high level of nondeterminism,especially in large and complex ones.AMC is a model checking system for verifying asynchronous concurrent systems by using branching time temporal logic.This paper introduces the techniques of the modelling approach,especially how to construct models for large concurrent systems with the concept of hierarchy,which has been proved to be effective and practical in verifying large systems without a large growth of cost.

  10. Analysis and Optimisation of Hierarchically Scheduled Multiprocessor Embedded Systems

    DEFF Research Database (Denmark)

    Pop, Traian; Pop, Paul; Eles, Petru;

    2008-01-01

    , they are organised in a hierarchy. In this paper, we first develop a holistic scheduling and schedulability analysis that determines the timing properties of a hierarchically scheduled system. Second, we address design problems that are characteristic to such hierarchically scheduled systems: assignment......We present an approach to the analysis and optimisation of heterogeneous multiprocessor embedded systems. The systems are heterogeneous not only in terms of hardware components, but also in terms of communication protocols and scheduling policies. When several scheduling policies share a resource...... of scheduling policies to tasks, mapping of tasks to hardware components, and the scheduling of the activities. We also present several algorithms for solving these problems. Our heuristics are able to find schedulable implementations under limited resources, achieving an efficient utilisation of the system...

  11. Optimization of Hierarchically Scheduled Heterogeneous Embedded Systems

    DEFF Research Database (Denmark)

    Pop, Traian; Pop, Paul; Eles, Petru;

    2005-01-01

    We present an approach to the analysis and optimization of heterogeneous distributed embedded systems. The systems are heterogeneous not only in terms of hardware components, but also in terms of communication protocols and scheduling policies. When several scheduling policies share a resource...

  12. Cooperative mechanism of self-regulation in hierarchical living systems

    CERN Document Server

    Lubashevsky, I A

    1998-01-01

    We study the problem of how a ``living'' system complex in structure can respond perfectly to local changes in the environment. Such a system is assumed to consist of a distributed ``living'' medium and a hierarchical ``supplying'' network that provides this medium with ``nutritious'' products. Because of the hierarchical organization each element of the supplying network has to behave in a self-consistent way for the system can adapt to changes in the environment. We propose a cooperative mechanism of self-regulation by which the system as a whole can react perfectly. This mechanism is based on an individual response of each element to the corresponding small piece of the information on the state of the ``living'' medium. The conservation of flux through the supplying network gives rise to a certain processing of information and the self-consistent behavior of the elements, leading to the perfect self-regulation. The corresponding equations governing the ``living'' medium state are obtained.

  13. P2MP MPLS-Based Hierarchical Service Management System

    Science.gov (United States)

    Kumaki, Kenji; Nakagawa, Ikuo; Nagami, Kenichi; Ogishi, Tomohiko; Ano, Shigehiro

    This paper proposes a point-to-multipoint (P2MP) Multi-Protocol Label Switching (MPLS) based hierarchical service management system. Traditionally, general management systems deployed in some service providers control MPLS Label Switched Paths (LSPs) (e.g., RSVP-TE and LDP) and services (e.g., L2VPN, L3VPN and IP) separately. In order for dedicated management systems for MPLS LSPs and services to cooperate with each other automatically, a hierarchical service management system has been proposed with the main focus on point-to-point (P2P) TE LSPs in MPLS path management. In the case where P2MP TE LSPs and services are deployed in MPLS networks, the dedicated management systems for P2MP TE LSPs and services must work together automatically. Therefore, this paper proposes a new algorithm that uses a correlation between P2MP TE LSPs and multicast VPN services based on a P2MP MPLS-based hierarchical service management architecture. Also, the capacity and performance of the proposed algorithm are evaluated by simulations, which are actually based on certain real MPLS production networks, and are compared to that of the algorithm for P2P TE LSPs. Results show this system is very scalable within real MPLS production networks. This system, with the automatic correlation, appears to be deployable in real MPLS production networks.

  14. A VV&A evaluation system based on hierarchical evaluation

    Institute of Scientific and Technical Information of China (English)

    FANG Ke; YANG Ming; WANG Zi-cai

    2005-01-01

    Evaluation is the major activity of performing Verification, Validation and Accreditation (VV&A) of a simulation system. Unfortunately, there is a lack of reasonable and operable evaluation methods. Moreover,there are other problems to address in VV&A evaluation, such as index definition, conclusion analysis, etc. In this paper, a VV&A evaluation system is introduced to try to resolve these problems. The system is based on a method called hierarchical evaluation, and it uses a good combination of evaluation processes and indexes.First, a thorough analysis of the VV&A evaluation' s essentials and principles are given, then the uncertainty of the evaluation results caused by various analysis of the evaluators is pointed out, then a hierarchical evaluation mechanism based on evaluator weight and evaluation hierarchy is brought forward, and finally a comprehensive VV&A evaluation system with evaluation flow processing, index management and hierarchical evaluation fulfillment is established. The system gives good consideration to ease of operation, reasonableness of evaluation conclusion, and the ability to comprehensively resolve VV&A problems. Since VV&A is attracting more and more recognition, it is meaningful to provide a good system for implementing credible simulation systems. It is hoped that this VV&A evaluation will provide a good way.

  15. Widening the Schedulability Hierarchical Scheduling Systems

    DEFF Research Database (Denmark)

    Boudjadar, Jalil; David, Alexandre; Kim, Jin Hyun

    2014-01-01

    the supply of resources in each component. We specifically investigate two different techniques to widen the set of provably schedulable systems: 1) a new supplier model; 2) restricting the potential task offsets. We also provide a way to estimate the minimum resource supply (budget) that a component...

  16. Coordinated Resource Management Models in Hierarchical Systems

    Directory of Open Access Journals (Sweden)

    Gabsi Mounir

    2013-03-01

    Full Text Available In response to the trend of efficient global economy, constructing a global logistic model has garnered much attention from the industry .Location selection is an important issue for those international companies that are interested in building a global logistics management system. Infrastructure in Developing Countries are based on the use of both classical and modern control technology, for which the most important components are professional levels of structure knowledge, dynamics and management processes, threats and interference and external and internal attacks. The problem of control flows of energy and materials resources in local and regional structures in normal and marginal, emergency operation provoked information attacks or threats on failure flows are further relevant especially when considering the low level of professional ,psychological and cognitive training of operational personnel manager. Logistics Strategies include the business goals requirements, allowable decisions tactics, and vision for designing and operating a logistics system .In this paper described the selection module coordinating flow management strategies based on the use of resources and logistics systems concepts.

  17. Clinical time series prediction: Toward a hierarchical dynamical system framework.

    Science.gov (United States)

    Liu, Zitao; Hauskrecht, Milos

    2015-09-01

    Developing machine learning and data mining algorithms for building temporal models of clinical time series is important for understanding of the patient condition, the dynamics of a disease, effect of various patient management interventions and clinical decision making. In this work, we propose and develop a novel hierarchical framework for modeling clinical time series data of varied length and with irregularly sampled observations. Our hierarchical dynamical system framework for modeling clinical time series combines advantages of the two temporal modeling approaches: the linear dynamical system and the Gaussian process. We model the irregularly sampled clinical time series by using multiple Gaussian process sequences in the lower level of our hierarchical framework and capture the transitions between Gaussian processes by utilizing the linear dynamical system. The experiments are conducted on the complete blood count (CBC) panel data of 1000 post-surgical cardiac patients during their hospitalization. Our framework is evaluated and compared to multiple baseline approaches in terms of the mean absolute prediction error and the absolute percentage error. We tested our framework by first learning the time series model from data for the patients in the training set, and then using it to predict future time series values for the patients in the test set. We show that our model outperforms multiple existing models in terms of its predictive accuracy. Our method achieved a 3.13% average prediction accuracy improvement on ten CBC lab time series when it was compared against the best performing baseline. A 5.25% average accuracy improvement was observed when only short-term predictions were considered. A new hierarchical dynamical system framework that lets us model irregularly sampled time series data is a promising new direction for modeling clinical time series and for improving their predictive performance. Copyright © 2014 Elsevier B.V. All rights reserved.

  18. Clinical time series prediction: towards a hierarchical dynamical system framework

    Science.gov (United States)

    Liu, Zitao; Hauskrecht, Milos

    2014-01-01

    Objective Developing machine learning and data mining algorithms for building temporal models of clinical time series is important for understanding of the patient condition, the dynamics of a disease, effect of various patient management interventions and clinical decision making. In this work, we propose and develop a novel hierarchical framework for modeling clinical time series data of varied length and with irregularly sampled observations. Materials and methods Our hierarchical dynamical system framework for modeling clinical time series combines advantages of the two temporal modeling approaches: the linear dynamical system and the Gaussian process. We model the irregularly sampled clinical time series by using multiple Gaussian process sequences in the lower level of our hierarchical framework and capture the transitions between Gaussian processes by utilizing the linear dynamical system. The experiments are conducted on the complete blood count (CBC) panel data of 1000 post-surgical cardiac patients during their hospitalization. Our framework is evaluated and compared to multiple baseline approaches in terms of the mean absolute prediction error and the absolute percentage error. Results We tested our framework by first learning the time series model from data for the patient in the training set, and then applying the model in order to predict future time series values on the patients in the test set. We show that our model outperforms multiple existing models in terms of its predictive accuracy. Our method achieved a 3.13% average prediction accuracy improvement on ten CBC lab time series when it was compared against the best performing baseline. A 5.25% average accuracy improvement was observed when only short-term predictions were considered. Conclusion A new hierarchical dynamical system framework that lets us model irregularly sampled time series data is a promising new direction for modeling clinical time series and for improving their predictive

  19. Modeling urban air pollution with optimized hierarchical fuzzy inference system.

    Science.gov (United States)

    Tashayo, Behnam; Alimohammadi, Abbas

    2016-10-01

    Environmental exposure assessments (EEA) and epidemiological studies require urban air pollution models with appropriate spatial and temporal resolutions. Uncertain available data and inflexible models can limit air pollution modeling techniques, particularly in under developing countries. This paper develops a hierarchical fuzzy inference system (HFIS) to model air pollution under different land use, transportation, and meteorological conditions. To improve performance, the system treats the issue as a large-scale and high-dimensional problem and develops the proposed model using a three-step approach. In the first step, a geospatial information system (GIS) and probabilistic methods are used to preprocess the data. In the second step, a hierarchical structure is generated based on the problem. In the third step, the accuracy and complexity of the model are simultaneously optimized with a multiple objective particle swarm optimization (MOPSO) algorithm. We examine the capabilities of the proposed model for predicting daily and annual mean PM2.5 and NO2 and compare the accuracy of the results with representative models from existing literature. The benefits provided by the model features, including probabilistic preprocessing, multi-objective optimization, and hierarchical structure, are precisely evaluated by comparing five different consecutive models in terms of accuracy and complexity criteria. Fivefold cross validation is used to assess the performance of the generated models. The respective average RMSEs and coefficients of determination (R (2)) for the test datasets using proposed model are as follows: daily PM2.5 = (8.13, 0.78), annual mean PM2.5 = (4.96, 0.80), daily NO2 = (5.63, 0.79), and annual mean NO2 = (2.89, 0.83). The obtained results demonstrate that the developed hierarchical fuzzy inference system can be utilized for modeling air pollution in EEA and epidemiological studies.

  20. Systemic Risk and Optimal Regulatory Architecture

    NARCIS (Netherlands)

    Espinosa-Vega, M.A.; Kahn, C.; Matta, R.; Sole, J.

    2011-01-01

    Until the recent financial crisis, the safety and soundness of financial institutions was assessed from the perspective of the individual institution. The financial crisis highlighted the need to take systemic externalities seriously when rethinking prudential oversight and the regulatory architectu

  1. Modernizing the Regulatory System for Biotechnology Products

    Science.gov (United States)

    This Web page describes the continuing effort to modernize the federal regulatory system for biotechnology products as well as clarify various roles of EPA, FDA and USDA in evaluating new biotechnology products.

  2. Reimplementing the Hierarchical Data System using HDF5

    CERN Document Server

    Jenness, Tim

    2015-01-01

    The Starlink Hierarchical Data System has been a very successful niche astronomy file format and library for over 30 years. Development of the library was frozen ten years ago when funding for Starlink was stopped and almost no-one remains who understands the implementation details. To ensure the long-term sustainability of the Starlink application software and to make the extensible N-Dimensional Data Format accessible to a broader range of users, we propose to re-implement the HDS library application interface as a layer on top of the Hierarchical Data Format version 5. We present an overview of the new implementation of version 5 of the HDS file format and describe differences between the expectations of the HDS and HDF5 library interfaces. We finish by comparing the old and new HDS implementations by looking at a comparison of file sizes and by comparing performance benchmarks.

  3. ECoS, a framework for modelling hierarchical spatial systems.

    Science.gov (United States)

    Harris, John R W; Gorley, Ray N

    2003-10-01

    A general framework for modelling hierarchical spatial systems has been developed and implemented as the ECoS3 software package. The structure of this framework is described, and illustrated with representative examples. It allows the set-up and integration of sets of advection-diffusion equations representing multiple constituents interacting in a spatial context. Multiple spaces can be defined, with zero, one or two-dimensions and can be nested, and linked through constituent transfers. Model structure is generally object-oriented and hierarchical, reflecting the natural relations within its real-world analogue. Velocities, dispersions and inter-constituent transfers, together with additional functions, are defined as properties of constituents to which they apply. The resulting modular structure of ECoS models facilitates cut and paste model development, and template model components have been developed for the assembly of a range of estuarine water quality models. Published examples of applications to the geochemical dynamics of estuaries are listed.

  4. Recent results on the hierarchical triple system HD 150136

    Science.gov (United States)

    Gosset, E.; Berger, J. P.; Absil, O.; Le Bouquin, J. B.; Sana, H.; Mahy, L.; De Becker, M.

    2013-06-01

    HD 150136 is a hierarchical triple system, non-thermal radio emitter, made of three O stars totalling some 130 solar masses. The 2.67-day inner orbit is rather well-known. Recent works derived a good approximation for the outer orbit with a period of 3000 days. We report here on interferometric observations that allow us to angularly resolve the outer orbit. First evidences for an astrometric displacement are given. The determination of the outer system orbit gives access to the inclinations of the systems and to the masses, including the one of the O3-O3.5 primary star.

  5. Inference of hierarchical regulatory network of estrogen-dependent breast cancer through ChIP-based data

    Directory of Open Access Journals (Sweden)

    Parvin Jeffrey

    2010-12-01

    Full Text Available Abstract Background Global profiling of in vivo protein-DNA interactions using ChIP-based technologies has evolved rapidly in recent years. Although many genome-wide studies have identified thousands of ERα binding sites and have revealed the associated transcription factor (TF partners, such as AP1, FOXA1 and CEBP, little is known about ERα associated hierarchical transcriptional regulatory networks. Results In this study, we applied computational approaches to analyze three public available ChIP-based datasets: ChIP-seq, ChIP-PET and ChIP-chip, and to investigate the hierarchical regulatory network for ERα and ERα partner TFs regulation in estrogen-dependent breast cancer MCF7 cells. 16 common TFs and two common new TF partners (RORA and PITX2 were found among ChIP-seq, ChIP-chip and ChIP-PET datasets. The regulatory networks were constructed by scanning the ChIP-peak region with TF specific position weight matrix (PWM. A permutation test was performed to test the reliability of each connection of the network. We then used DREM software to perform gene ontology function analysis on the common genes. We found that FOS, PITX2, RORA and FOXA1 were involved in the up-regulated genes. We also conducted the ERα and Pol-II ChIP-seq experiments in tamoxifen resistance MCF7 cells (denoted as MCF7-T in this study and compared the difference between MCF7 and MCF7-T cells. The result showed very little overlap between these two cells in terms of targeted genes (21.2% of common genes and targeted TFs (25% of common TFs. The significant dissimilarity may indicate totally different transcriptional regulatory mechanisms between these two cancer cells. Conclusions Our study uncovers new estrogen-mediated regulatory networks by mining three ChIP-based data in MCF7 cells and ChIP-seq data in MCF7-T cells. We compared the different ChIP-based technologies as well as different breast cancer cells. Our computational analytical approach may guide biologists to

  6. Inference of hierarchical regulatory network of estrogen-dependent breast cancer through ChIP-based data

    Science.gov (United States)

    2010-01-01

    Background Global profiling of in vivo protein-DNA interactions using ChIP-based technologies has evolved rapidly in recent years. Although many genome-wide studies have identified thousands of ERα binding sites and have revealed the associated transcription factor (TF) partners, such as AP1, FOXA1 and CEBP, little is known about ERα associated hierarchical transcriptional regulatory networks. Results In this study, we applied computational approaches to analyze three public available ChIP-based datasets: ChIP-seq, ChIP-PET and ChIP-chip, and to investigate the hierarchical regulatory network for ERα and ERα partner TFs regulation in estrogen-dependent breast cancer MCF7 cells. 16 common TFs and two common new TF partners (RORA and PITX2) were found among ChIP-seq, ChIP-chip and ChIP-PET datasets. The regulatory networks were constructed by scanning the ChIP-peak region with TF specific position weight matrix (PWM). A permutation test was performed to test the reliability of each connection of the network. We then used DREM software to perform gene ontology function analysis on the common genes. We found that FOS, PITX2, RORA and FOXA1 were involved in the up-regulated genes. We also conducted the ERα and Pol-II ChIP-seq experiments in tamoxifen resistance MCF7 cells (denoted as MCF7-T in this study) and compared the difference between MCF7 and MCF7-T cells. The result showed very little overlap between these two cells in terms of targeted genes (21.2% of common genes) and targeted TFs (25% of common TFs). The significant dissimilarity may indicate totally different transcriptional regulatory mechanisms between these two cancer cells. Conclusions Our study uncovers new estrogen-mediated regulatory networks by mining three ChIP-based data in MCF7 cells and ChIP-seq data in MCF7-T cells. We compared the different ChIP-based technologies as well as different breast cancer cells. Our computational analytical approach may guide biologists to further study the

  7. A Hierarchical Security Architecture for Cyber-Physical Systems

    Energy Technology Data Exchange (ETDEWEB)

    Quanyan Zhu; Tamer Basar

    2011-08-01

    Security of control systems is becoming a pivotal concern in critical national infrastructures such as the power grid and nuclear plants. In this paper, we adopt a hierarchical viewpoint to these security issues, addressing security concerns at each level and emphasizing a holistic cross-layer philosophy for developing security solutions. We propose a bottom-up framework that establishes a model from the physical and control levels to the supervisory level, incorporating concerns from network and communication levels. We show that the game-theoretical approach can yield cross-layer security strategy solutions to the cyber-physical systems.

  8. Eccentricity evolution in hierarchical triple systems with eccentric outer binaries

    CERN Document Server

    Georgakarakos, Nikolaos

    2014-01-01

    We develop a technique for estimating the inner eccentricity in hierarchical triple systems, with the inner orbit being initially circular, while the outer one is eccentric. We consider coplanar systems with well separated components and comparable masses. The derivation of short period terms is based on an expansion of the rate of change of the Runge-Lenz vector. Then, the short period terms are combined with secular terms, obtained by means of canonical perturbation theory. The validity of the theoretical equations is tested by numerical integrations of the full equations of motion.

  9. Agent-based distributed hierarchical control of dc microgrid systems

    DEFF Research Database (Denmark)

    Meng, Lexuan; Vasquez, Juan Carlos; Guerrero, Josep M.

    2014-01-01

    In order to enable distributed control and management for microgrids, this paper explores the application of information consensus and local decisionmaking methods formulating an agent based distributed hierarchical control system. A droop controlled paralleled DC/DC converter system is taken...... as a case study. The objective is to enhance the system efficiency by finding the optimal sharing ratio of load current. Virtual resistances in local control systems are taken as decision variables. Consensus algorithms are applied for global information discovery and local control systems coordination....... Standard genetic algorithm is applied in each local control system in order to search for a global optimum. Hardware-in-Loop simulation results are shown to demonstrate the effectiveness of the method....

  10. Stress generation and hierarchical fracturing in reactive systems

    Science.gov (United States)

    Jamtveit, B.; Iyer, K.; Royne, A.; Malthe-Sorenssen, A.; Mathiesen, J.; Feder, J.

    2007-12-01

    Hierarchical fracture patterns are the result of a slowly driven fracturing process that successively divides the rocks into smaller domains. In quasi-2D systems, such fracture patterns are characterized by four sided domains, and T-junctions where new fractures stop at right angles to pre-existing fractures. We describe fracturing of mm to dm thick enstatite layers in a dunite matrix from the Leka ophiolite complex in Norway. The fracturing process is driven by expansion of the dunite matrix during serpentinization. The cumulative distributions of fracture lengths show a scaling behavior that lies between a log - normal and power law (fractal) distribution. This is consistent with a simple fragmentation model in which domains are divided according to a 'top hat' distribution of new fracture positions within unfractured domains. Reaction-assisted hierarchical fracturing is also likely to be responsible for other (3-D) structures commonly observed in serpentinized ultramafic rocks, including the mesh-textures observed in individual olivine grains, and the high abundance of rectangular domains at a wide range of scales. Spectacular examples of 3-D hierarchical fracture patterns also form during the weathering of basaltic intrusions (dolerites). Incipient chemical weathering of dolerites in the Karoo Basin in South Africa occurs around water- filled fractures, originally produced by thermal contraction or by externally imposed stresses. This chemical weathering causes local expansion of the rock matrix and generates elastic stresses. On a mm to cm scale, these stresses lead to mechanical layer-by-layer spalling, producing the characteristic spheroidal weathering patterns. However, our field observations and computer simulations demonstrate that in confined environments, the spalling process alone is unable to relieve the elastic stresses. In such cases, chemical weathering drives a much larger scale hierarchical fracturing process in which fresh dolerite undergoes a

  11. OBSERVATIONS OF HIERARCHICAL SOLAR-TYPE MULTIPLE STAR SYSTEMS

    Energy Technology Data Exchange (ETDEWEB)

    Roberts, Lewis C. Jr. [Jet Propulsion Laboratory, California Institute of Technology, 4800 Oak Grove Drive, Pasadena CA 91109 (United States); Tokovinin, Andrei [Cerro Tololo Inter-American Observatory, Casilla 603, La Serena (Chile); Mason, Brian D.; Hartkopf, William I. [U.S. Naval Observatory, 3450 Massachusetts Avenue, NW, Washington, DC 20392-5420 (United States); Riddle, Reed L., E-mail: lewis.c.roberts@jpl.nasa.gov [Division of Physics, Mathematics, and Astronomy, California Institute of Technology, Pasadena, CA 91125 (United States)

    2015-10-15

    Twenty multiple stellar systems with solar-type primaries were observed at high angular resolution using the PALM-3000 adaptive optics system at the 5 m Hale telescope. The goal was to complement the knowledge of hierarchical multiplicity in the solar neighborhood by confirming recent discoveries by the visible Robo-AO system with new near-infrared observations with PALM-3000. The physical status of most, but not all, of the new pairs is confirmed by photometry in the Ks band and new positional measurements. In addition, we resolved for the first time five close sub-systems: the known astrometric binary in HIP 17129AB, companions to the primaries of HIP 33555, and HIP 118213, and the companions to the secondaries in HIP 25300 and HIP 101430. We place the components on a color–magnitude diagram and discuss each multiple system individually.

  12. Observations of Hierarchical Solar-Type Multiple Star Systems

    CERN Document Server

    Roberts,, Lewis C; Mason, Brian D; Hartkopf, William I; Riddle, Reed L

    2015-01-01

    Twenty multiple stellar systems with solar-type primaries were observed at high angular resolution using the PALM-3000 adaptive optics system at the 5 m Hale telescope. The goal was to complement the knowledge of hierarchical multiplicity in the solar neighborhood by confirming recent discoveries by the visible Robo-AO system with new near-infrared observations with PALM-3000. The physical status of most, but not all, of the new pairs is confirmed by photometry in the Ks band and new positional measurements. In addition, we resolved for the first time five close sub-systems: the known astrometric binary in HIP 17129AB, companions to the primaries of HIP 33555, and HIP 118213, and the companions to the secondaries in HIP 25300 and HIP 101430. We place the components on a color-magnitude diagram and discuss each multiple system individually.

  13. Hierarchical Control for Optimal and Distributed Operation of Microgrid Systems

    DEFF Research Database (Denmark)

    Meng, Lexuan

    of the underlying communication features (sampling time, topology, parameters, etc.). System dynamics and sensitivity analysis are conducted based on the proposed model. A MG central controller is also developed based on the experimental system in the intelligent MG lab in Aalborg University for providing...... are also conducted in order to ensure safe operation during the optimization procedure. In addition, as the secondary and tertiary controls require global information to perform the functions, they are usually implemented in centralized fashion. In this sense the communication links are required from...... the central unit to each local unit, a single point of failure in the central controller may jerpodize the safety of the whole system, and the flexibility of the system is limited. Consequently, this project proposes the application of dynamic consensus algorithm (DCA) into existing hierarchical control...

  14. The evolution of hierarchical triple star-systems

    Science.gov (United States)

    Toonen, Silvia; Hamers, Adrian; Portegies Zwart, Simon

    2016-12-01

    Field stars are frequently formed in pairs, and many of these binaries are part of triples or even higher-order systems. Even though, the principles of single stellar evolution and binary evolution, have been accepted for a long time, the long-term evolution of stellar triples is poorly understood. The presence of a third star in an orbit around a binary system can significantly alter the evolution of those stars and the binary system. The rich dynamical behaviour in three-body systems can give rise to Lidov-Kozai cycles, in which the eccentricity of the inner orbit and the inclination between the inner and outer orbit vary periodically. In turn, this can lead to an enhancement of tidal effects (tidal friction), gravitational-wave emission and stellar interactions such as mass transfer and collisions. The lack of a self-consistent treatment of triple evolution, including both three-body dynamics as well as stellar evolution, hinders the systematic study and general understanding of the long-term evolution of triple systems. In this paper, we aim to address some of these hiatus, by discussing the dominant physical processes of hierarchical triple evolution, and presenting heuristic recipes for these processes. To improve our understanding on hierarchical stellar triples, these descriptions are implemented in a public source code TrES, which combines three-body dynamics (based on the secular approach) with stellar evolution and their mutual influences. Note that modelling through a phase of stable mass transfer in an eccentric orbit is currently not implemented in TrES, but can be implemented with the appropriate methodology at a later stage.

  15. Impact of hierarchical memory systems on linear algebra algorithm design

    Energy Technology Data Exchange (ETDEWEB)

    Gallivan, K.; Jalby, W.; Meier, U.; Sameh, A.H.

    1988-01-01

    Linear algebra algorithms based on the BLAS or extended BLAS do not achieve high performance on multivector processors with a hierarchical memory system because of a lack of data locality. For such machines, block linear algebra algorithms must be implemented in terms of matrix-matrix primitives (BLAS3). Designing efficient linear algebra algorithms for these architectures requires analysis of the behavior of the matrix-matrix primitives and the resulting block algorithms as a function of certain system parameters. The analysis must identify the limits of performance improvement possible via blocking and any contradictory trends that require trade-off consideration. The authors propose a methodology that facilitates such an analysis and use it to analyze the performance of the BLAS3 primitives used in block methods. A similar analysis of the block size-performance relationship is also performed at the algorithm level for block versions of the LU decomposition and the Gram-Schmidt orthogonalization procedures.

  16. Dynamic Non-Hierarchical File Systems for Exascale Storage

    Energy Technology Data Exchange (ETDEWEB)

    Long, Darrell E. [PI; Miller, Ethan L [Co PI

    2015-02-24

    This constitutes the final report for “Dynamic Non-Hierarchical File Systems for Exascale Storage”. The ultimate goal of this project was to improve data management in scientific computing and high-end computing (HEC) applications, and to achieve this goal we proposed: to develop the first, HEC-targeted, file system featuring rich metadata and provenance collection, extreme scalability, and future storage hardware integration as core design goals, and to evaluate and develop a flexible non-hierarchical file system interface suitable for providing more powerful and intuitive data management interfaces to HEC and scientific computing users. Data management is swiftly becoming a serious problem in the scientific community – while copious amounts of data are good for obtaining results, finding the right data is often daunting and sometimes impossible. Scientists participating in a Department of Energy workshop noted that most of their time was spent “...finding, processing, organizing, and moving data and it’s going to get much worse”. Scientists should not be forced to become data mining experts in order to retrieve the data they want, nor should they be expected to remember the naming convention they used several years ago for a set of experiments they now wish to revisit. Ideally, locating the data you need would be as easy as browsing the web. Unfortunately, existing data management approaches are usually based on hierarchical naming, a 40 year-old technology designed to manage thousands of files, not exabytes of data. Today’s systems do not take advantage of the rich array of metadata that current high-end computing (HEC) file systems can gather, including content-based metadata and provenance1 information. As a result, current metadata search approaches are typically ad hoc and often work by providing a parallel management system to the “main” file system, as is done in Linux (the locate utility), personal computers, and enterprise search

  17. A Hierarchical Statistic Methodology for Advanced Memory System Evaluation

    Energy Technology Data Exchange (ETDEWEB)

    Sun, X.-J.; He, D.; Cameron, K.W.; Luo, Y.

    1999-04-12

    Advances in technology have resulted in a widening of the gap between computing speed and memory access time. Data access time has become increasingly important for computer system design. Various hierarchical memory architectures have been developed. The performance of these advanced memory systems, however, varies with applications and problem sizes. How to reach an optimal cost/performance design eludes researchers still. In this study, the authors introduce an evaluation methodology for advanced memory systems. This methodology is based on statistical factorial analysis and performance scalability analysis. It is two fold: it first determines the impact of memory systems and application programs toward overall performance; it also identifies the bottleneck in a memory hierarchy and provides cost/performance comparisons via scalability analysis. Different memory systems can be compared in terms of mean performance or scalability over a range of codes and problem sizes. Experimental testing has been performed extensively on the Department of Energy's Accelerated Strategic Computing Initiative (ASCI) machines and benchmarks available at the Los Alamos National Laboratory to validate this newly proposed methodology. Experimental and analytical results show this methodology is simple and effective. It is a practical tool for memory system evaluation and design. Its extension to general architectural evaluation and parallel computer systems are possible and should be further explored.

  18. Universality classes of fluctuation dynamics in hierarchical complex systems

    Science.gov (United States)

    Macêdo, A. M. S.; González, Iván R. Roa; Salazar, D. S. P.; Vasconcelos, G. L.

    2017-03-01

    A unified approach is proposed to describe the statistics of the short-time dynamics of multiscale complex systems. The probability density function of the relevant time series (signal) is represented as a statistical superposition of a large time-scale distribution weighted by the distribution of certain internal variables that characterize the slowly changing background. The dynamics of the background is formulated as a hierarchical stochastic model whose form is derived from simple physical constraints, which in turn restrict the dynamics to only two possible classes. The probability distributions of both the signal and the background have simple representations in terms of Meijer G functions. The two universality classes for the background dynamics manifest themselves in the signal distribution as two types of tails: power law and stretched exponential, respectively. A detailed analysis of empirical data from classical turbulence and financial markets shows excellent agreement with the theory.

  19. Hierarchical cooperative control for multiagent systems with switching directed topologies.

    Science.gov (United States)

    Hu, Jianqiang; Cao, Jinde

    2015-10-01

    The hierarchical cooperative control problem is concerned for a two-layer networked multiagent system under switching directed topologies. The group cooperative objective is to achieve finite-time formation control for the upper layer of leaders and containment control for the lower layer of followers. Two kinds of cooperative strategies, including centralized-distributed control and distributed-distributed control, are proposed for two types of switching laws: 1) random switching law with the dwell time and 2) Markov switching law with stationary distribution. Utilizing the state transition matrix methods and matrix measure techniques, some sufficient conditions are derived for asymptotical containment control and exponential almost sure containment control, respectively. Finally, some numerical examples are provided to demonstrate the effectiveness of the proposed control schemes.

  20. Secular Orbital Dynamics of Hierarchical Two Planet Systems

    CERN Document Server

    Veras, Dimitri

    2010-01-01

    The discovery of multi-planet extrasolar systems has kindled interest in using their orbital evolution as a probe of planet formation. Accurate descriptions of planetary orbits identify systems which could hide additional planets or be in a special dynamical state, and inform targeted follow-up observations. We combine published radial velocity data with Markov Chain Monte Carlo analyses in order to obtain an ensemble of masses, semimajor axes, eccentricities and orbital angles for each of 5 dynamically active multi-planet systems: HD 11964, HD 38529, HD 108874, HD 168443, and HD 190360. We dynamically evolve these systems using 52,000 long-term N-body integrations that sample the full range of possible line-of-sight and relative inclinations, and we report on the system stability, secular evolution and the extent of the resonant interactions. We find that planetary orbits in hierarchical systems exhibit complex dynamics and can become highly eccentric and maybe significantly inclined. Additionally we incorpo...

  1. Hierarchical sparse coding in the sensory system of Caenorhabditis elegans.

    Science.gov (United States)

    Zaslaver, Alon; Liani, Idan; Shtangel, Oshrat; Ginzburg, Shira; Yee, Lisa; Sternberg, Paul W

    2015-01-27

    Animals with compact sensory systems face an encoding problem where a small number of sensory neurons are required to encode information about its surrounding complex environment. Using Caenorhabditis elegans worms as a model, we ask how chemical stimuli are encoded by a small and highly connected sensory system. We first generated a comprehensive library of transgenic worms where each animal expresses a genetically encoded calcium indicator in individual sensory neurons. This library includes the vast majority of the sensory system in C. elegans. Imaging from individual sensory neurons while subjecting the worms to various stimuli allowed us to compile a comprehensive functional map of the sensory system at single neuron resolution. The functional map reveals that despite the dense wiring, chemosensory neurons represent the environment using sparse codes. Moreover, although anatomically closely connected, chemo- and mechano-sensory neurons are functionally segregated. In addition, the code is hierarchical, where few neurons participate in encoding multiple cues, whereas other sensory neurons are stimulus specific. This encoding strategy may have evolved to mitigate the constraints of a compact sensory system.

  2. Hierarchical, Three-Dimensional Measurement System for Crime Scene Scanning.

    Science.gov (United States)

    Marcin, Adamczyk; Maciej, Sieniło; Robert, Sitnik; Adam, Woźniak

    2017-02-02

    We present a new generation of three-dimensional (3D) measuring systems, developed for the process of crime scene documentation. This measuring system facilitates the preparation of more insightful, complete, and objective documentation for crime scenes. Our system reflects the actual requirements for hierarchical documentation, and it consists of three independent 3D scanners: a laser scanner for overall measurements, a situational structured light scanner for more minute measurements, and a detailed structured light scanner for the most detailed parts of tscene. Each scanner has its own spatial resolution, of 2.0, 0.3, and 0.05 mm, respectively. The results of interviews we have conducted with technicians indicate that our developed 3D measuring system has significant potential to become a useful tool for forensic technicians. To ensure the maximum compatibility of our measuring system with the standards that regulate the documentation process, we have also performed a metrological validation and designated the maximum permissible length measurement error EMPE for each structured light scanner. In this study, we present additional results regarding documentation processes conducted during crime scene inspections and a training session.

  3. QHNS: QoS-aware Hierarchical Name System

    Directory of Open Access Journals (Sweden)

    Fuhong Lin

    2011-10-01

    Full Text Available Naming and name resolution mapping are playing extremely important roles in Internet applications. Currently, naming is constructed by the combination of the location of host and the location of resource in the host, and name resolution mapping system is constructed by a tree-like domain name system (DNS. To overcome the shortcomings of DNS, such as not supporting data migration and replication, vulnerable to Denial of Service (DoS attacks and not supporting quality of service (QoS, researchers have proposed a DHT-based flat structure to achieve naming and name resolution mapping. This system deals with the shortcomings of DNS above very well except supporting QoS, but it introduces a new problem that the resolution time cost is so large that users often can not tolerate this long delay. In this paper, we present an improved structure called QoS-aware Hierarchical Name System (QHNS by combining the advantages of DNS and DHT. The architecture of QHNS is a two-layer’s structure, namely top-layer which maintains the global information and bottom-layer which maintains local information. Owning to the location information, the resolution delay is greatly reduced while the shortcomings of DNS have been eliminated. And this design can also can do well with the shortcomings of the above two approaches that they can not provide QoS. Finally, theoretical analysis and numerical experiments show that our system is feasible in the practical use.

  4. Regulatory system reform of occupational health and safety in China.

    Science.gov (United States)

    Wu, Fenghong; Chi, Yan

    2015-01-01

    With the explosive economic growth and social development, China's regulatory system of occupational health and safety now faces more and more challenges. This article reviews the history of regulatory system of occupational health and safety in China, as well as the current reform of this regulatory system in the country. Comprehensive, a range of laws, regulations and standards that promulgated by Chinese government, duties and responsibilities of the regulatory departments are described. Problems of current regulatory system, the ongoing adjustments and changes for modifying and improving regulatory system are discussed. The aim of reform and the incentives to drive forward more health and safety conditions in workplaces are also outlined.

  5. National Strategy for Modernizing the Regulatory System for Biotechnology Products

    Science.gov (United States)

    This National Strategy for Modernizing the Regulatory System for Biotechnology Products sets forth a vision for ensuring that the federal regulatory system is prepared to efficiently assess the risks, if any, of the future products of biotechnology.

  6. Hierarchical Recognition Scheme for Human Facial Expression Recognition Systems

    Directory of Open Access Journals (Sweden)

    Muhammad Hameed Siddiqi

    2013-12-01

    Full Text Available Over the last decade, human facial expressions recognition (FER has emerged as an important research area. Several factors make FER a challenging research problem. These include varying light conditions in training and test images; need for automatic and accurate face detection before feature extraction; and high similarity among different expressions that makes it difficult to distinguish these expressions with a high accuracy. This work implements a hierarchical linear discriminant analysis-based facial expressions recognition (HL-FER system to tackle these problems. Unlike the previous systems, the HL-FER uses a pre-processing step to eliminate light effects, incorporates a new automatic face detection scheme, employs methods to extract both global and local features, and utilizes a HL-FER to overcome the problem of high similarity among different expressions. Unlike most of the previous works that were evaluated using a single dataset, the performance of the HL-FER is assessed using three publicly available datasets under three different experimental settings: n-fold cross validation based on subjects for each dataset separately; n-fold cross validation rule based on datasets; and, finally, a last set of experiments to assess the effectiveness of each module of the HL-FER separately. Weighted average recognition accuracy of 98.7% across three different datasets, using three classifiers, indicates the success of employing the HL-FER for human FER.

  7. Tensegrity I. Cell structure and hierarchical systems biology

    Science.gov (United States)

    Ingber, Donald E.

    2003-01-01

    In 1993, a Commentary in this journal described how a simple mechanical model of cell structure based on tensegrity architecture can help to explain how cell shape, movement and cytoskeletal mechanics are controlled, as well as how cells sense and respond to mechanical forces (J. Cell Sci. 104, 613-627). The cellular tensegrity model can now be revisited and placed in context of new advances in our understanding of cell structure, biological networks and mechanoregulation that have been made over the past decade. Recent work provides strong evidence to support the use of tensegrity by cells, and mathematical formulations of the model predict many aspects of cell behavior. In addition, development of the tensegrity theory and its translation into mathematical terms are beginning to allow us to define the relationship between mechanics and biochemistry at the molecular level and to attack the larger problem of biological complexity. Part I of this two-part article covers the evidence for cellular tensegrity at the molecular level and describes how this building system may provide a structural basis for the hierarchical organization of living systems--from molecule to organism. Part II, which focuses on how these structural networks influence information processing networks, appears in the next issue.

  8. A young hierarchical triple system harbouring a candidate debris disc

    CERN Document Server

    Deacon, N R; Olofsson, J; Johnston, K G; Henning, Th

    2013-01-01

    We report the detection of a wide young hierarchical triple system where the primary has a candidate debris disc. The primary, TYC 5241-986-1 A, is a known Tycho star which we classify as a late-K star with emission in the X-ray, near and far-UV and H\\alpha\\ suggestive of youth. Its proper motion, photometric distance (65-105 pc) and radial velocity lead us to associate the system with the broadly defined Local Association of young stars but not specifically with any young moving group. The presence of weak lithium absorption and X-ray and calcium H and K emission support an age in the 20 to ~125 Myr range. The secondary is a pair of M4.5+-0.5 dwarfs with near and far UV and H\\alpha\\ emission separated by approximately 1 arcsec (~65-105 AU projected separation) which lie 145 arcsec (9200-15200 AU) from the primary. The primary has a WISE 22 micron excess and follow-up Herschel observations also detect an excess at 70 micron. The excess emissions are indicative of a 100-175 K debris disc. We also explore the p...

  9. Tensegrity I. Cell structure and hierarchical systems biology

    Science.gov (United States)

    Ingber, Donald E.

    2003-01-01

    In 1993, a Commentary in this journal described how a simple mechanical model of cell structure based on tensegrity architecture can help to explain how cell shape, movement and cytoskeletal mechanics are controlled, as well as how cells sense and respond to mechanical forces (J. Cell Sci. 104, 613-627). The cellular tensegrity model can now be revisited and placed in context of new advances in our understanding of cell structure, biological networks and mechanoregulation that have been made over the past decade. Recent work provides strong evidence to support the use of tensegrity by cells, and mathematical formulations of the model predict many aspects of cell behavior. In addition, development of the tensegrity theory and its translation into mathematical terms are beginning to allow us to define the relationship between mechanics and biochemistry at the molecular level and to attack the larger problem of biological complexity. Part I of this two-part article covers the evidence for cellular tensegrity at the molecular level and describes how this building system may provide a structural basis for the hierarchical organization of living systems--from molecule to organism. Part II, which focuses on how these structural networks influence information processing networks, appears in the next issue.

  10. Scale of association: hierarchical linear models and the measurement of ecological systems

    Science.gov (United States)

    Sean M. McMahon; Jeffrey M. Diez

    2007-01-01

    A fundamental challenge to understanding patterns in ecological systems lies in employing methods that can analyse, test and draw inference from measured associations between variables across scales. Hierarchical linear models (HLM) use advanced estimation algorithms to measure regression relationships and variance-covariance parameters in hierarchically structured...

  11. Rule weights in a neuro-fuzzy system with a hierarchical domain partition

    National Research Council Canada - National Science Library

    Krzysztof Siminski

    2010-01-01

      Rule weights in a neuro-fuzzy system with a hierarchical domain partition The paper discusses the problem of rule weight tuning in neuro-fuzzy systems with parameterized consequences in which rule...

  12. Dynamics and thermodynamics in hierarchically organized systems applications in physics, biology and economics

    CERN Document Server

    Auger, P

    2013-01-01

    One of the most fundamental and efficient ways of conceptualizing complex systems is to organize them hierarchically. A hierarchically organized system is represented by a network of interconnected subsystems, each of which has its own network of subsystems, and so on, until some elementary subsystems are reached that are not further decomposed. This original and important book proposes a general mathematical theory of a hierarchical system and shows how it can be applied to very different topics such as physics (Hamiltonian systems), biology (coupling the molecular and the cellular levels), e

  13. Predictability of extremes in non-linear hierarchically organized systems

    Science.gov (United States)

    Kossobokov, V. G.; Soloviev, A.

    2011-12-01

    Understanding the complexity of non-linear dynamics of hierarchically organized systems progresses to new approaches in assessing hazard and risk of the extreme catastrophic events. In particular, a series of interrelated step-by-step studies of seismic process along with its non-stationary though self-organized behaviors, has led already to reproducible intermediate-term middle-range earthquake forecast/prediction technique that has passed control in forward real-time applications during the last two decades. The observed seismic dynamics prior to and after many mega, great, major, and strong earthquakes demonstrate common features of predictability and diverse behavior in course durable phase transitions in complex hierarchical non-linear system of blocks-and-faults of the Earth lithosphere. The confirmed fractal nature of earthquakes and their distribution in space and time implies that many traditional estimations of seismic hazard (from term-less to short-term ones) are usually based on erroneous assumptions of easy tractable analytical models, which leads to widespread practice of their deceptive application. The consequences of underestimation of seismic hazard propagate non-linearly into inflicted underestimation of risk and, eventually, into unexpected societal losses due to earthquakes and associated phenomena (i.e., collapse of buildings, landslides, tsunamis, liquefaction, etc.). The studies aimed at forecast/prediction of extreme events (interpreted as critical transitions) in geophysical and socio-economical systems include: (i) large earthquakes in geophysical systems of the lithosphere blocks-and-faults, (ii) starts and ends of economic recessions, (iii) episodes of a sharp increase in the unemployment rate, (iv) surge of the homicides in socio-economic systems. These studies are based on a heuristic search of phenomena preceding critical transitions and application of methodologies of pattern recognition of infrequent events. Any study of rare

  14. A young hierarchical triple system harbouring a candidate debris disc

    Science.gov (United States)

    Deacon, N. R.; Schlieder, J. E.; Olofsson, J.; Johnston, K. G.; Henning, Th.

    2013-09-01

    We report the detection of a wide young hierarchical triple system where the primary has a candidate debris disc. The primary, TYC 5241-986-1 A, is a known Tycho star which we classify as a late-K star with emission in the X-ray, near- and far-ultraviolet (UV) and Hα suggestive of youth. Its proper motion, photometric distance (65-105 pc) and radial velocity lead us to associate the system with the broadly defined Local Association of young stars but not specifically with any young moving group. The presence of weak lithium absorption and X-ray and calcium H and K emission support an age in the 20 to ˜125 Myr range. The secondary is a pair of M4.5 ± 0.5 dwarfs with near- and far-UV and Hα emission separated by approximately 1 arcsec (˜65-105 au projected separation) which lie of 145 arcsec (9200-15200 au) from the primary. The primary has a Wide-field Infrared Survey Explorer (WISE) 22 μm excess and follow-up Herschel observations also detect an excess at 70 μm. The excess emissions are indicative of a 100-175 K debris disc. We also explore the possibility that this excess could be due to a coincident background galaxy and conclude that this is unlikely. Debris discs are extremely rare around stars older than 15 Myr, hence if the excess is caused by a disc this is an extremely novel system.

  15. A Tool for Fast Development of Modular and Hierarchic Neural Network-based Systems

    Directory of Open Access Journals (Sweden)

    Francisco Reinaldo

    2006-08-01

    Full Text Available This paper presents PyramidNet tool as a fast and easy way to develop Modular and Hierarchic Neural Network-based Systems. This tool facilitates the fast emergence of autonomous behaviors in agents because it uses a hierarchic and modular control methodology of heterogeneous learning modules: the pyramid. Using the graphical resources of PyramidNet the user is able to specify a behavior system even having little understanding of artificial neural networks. Experimental tests have shown that a very significant speedup is attained in the development of modular and hierarchic neural network-based systems by using this tool.

  16. A Hierarchical Algorithm for Integrated Scheduling and Control With Applications to Power Systems

    DEFF Research Database (Denmark)

    Sokoler, Leo Emil; Dinesen, Peter Juhler; Jørgensen, John Bagterp

    2016-01-01

    The contribution of this paper is a hierarchical algorithm for integrated scheduling and control via model predictive control of hybrid systems. The controlled system is a linear system composed of continuous control, state, and output variables. Binary variables occur as scheduling decisions...... portfolio case study show that the hierarchical algorithm reduces the computation to solve the OCP by several orders of magnitude. The improvement in computation time is achieved without a significant increase in the overall cost of operation....

  17. Hierarchic Theory of Complex Systems (biosystems, colloids) self-organization and osmosis

    CERN Document Server

    Kaivarainen, A

    2000-01-01

    Summary of 'Hierarchic theory of condensed matter' Introduction 1. Protein domain mesoscopic organization 2. Quantum background of lipid domain organization in biomembranes 3. Hierarchic approach to theory of solutions and colloid systems 4. Distant solvent-mediated interaction between macromolecules 5. Spatial self-organization in the water-macromolecular systems 6. Properties of [bisolvent - polymer system] 7. Osmosis and solvent activity. Traditional and mesoscopic approach

  18. Regulatory guidance on soil cover systems

    Energy Technology Data Exchange (ETDEWEB)

    Kane, J.D. [Nuclear Regulatory Commission, Washington, DC (United States)

    1991-12-31

    The US Nuclear Regulatory Commission (NRC) in September 1991, completed revisions to 14 sections of the Standard Review Plan (SRP) for the Review of a License Application for a Low-Level Radioactive Waste Disposal Facility. The major purposes of the SRP are to ensure the quality and uniformity of the NRC staff`s safety reviews, and to present a well-defined base from which to evaluate the acceptability of information and data provided in the Safety Analysis Report (SAR) portion of the license application. SRP 3.2, entitled, Design Considerations for Normal and Abnormal/Accident Conditions, was one of the sections that was revised by the NRC staff. This revision was completed to provide additional regulatory guidance on the important considerations that need to be addressed for the proper design and construction of soil cover systems that are to be placed over the LLW. The cover system over the waste is acknowledged to be one of the most important engineered barriers for the long-term stable performance of the disposal facility. The guidance in revised SRP 3.2 summarizes the previous efforts and recommendations of the US Army Corps of Engineers (COE), and a peer review panel on the placement of soil cover systems. NRC published these efforts in NUREG/CR-5432. The discussions in this paper highlight selected recommendations on soil cover issues that the NRC staff considers important for ensuring the safe, long-term performance of the soil cover systems. The development phases to be discussed include: (1) cover design; (2) cover material selection; (3) laboratory and field testing; (4) field placement control and acceptance; and (5) penetrations through the constructed covers.

  19. Hierarchical fractal Weyl laws for chaotic resonance states in open mixed systems.

    Science.gov (United States)

    Körber, M J; Michler, M; Bäcker, A; Ketzmerick, R

    2013-09-13

    In open chaotic systems the number of long-lived resonance states obeys a fractal Weyl law, which depends on the fractal dimension of the chaotic saddle. We study the generic case of a mixed phase space with regular and chaotic dynamics. We find a hierarchy of fractal Weyl laws, one for each region of the hierarchical decomposition of the chaotic phase-space component. This is based on our observation of hierarchical resonance states localizing on these regions. Numerically this is verified for the standard map and a hierarchical model system.

  20. Functional states of the genome-scale Escherichia coli transcriptional regulatory system.

    Directory of Open Access Journals (Sweden)

    Erwin P Gianchandani

    2009-06-01

    Full Text Available A transcriptional regulatory network (TRN constitutes the collection of regulatory rules that link environmental cues to the transcription state of a cell's genome. We recently proposed a matrix formalism that quantitatively represents a system of such rules (a transcriptional regulatory system [TRS] and allows systemic characterization of TRS properties. The matrix formalism not only allows the computation of the transcription state of the genome but also the fundamental characterization of the input-output mapping that it represents. Furthermore, a key advantage of this "pseudo-stoichiometric" matrix formalism is its ability to easily integrate with existing stoichiometric matrix representations of signaling and metabolic networks. Here we demonstrate for the first time how this matrix formalism is extendable to large-scale systems by applying it to the genome-scale Escherichia coli TRS. We analyze the fundamental subspaces of the regulatory network matrix (R to describe intrinsic properties of the TRS. We further use Monte Carlo sampling to evaluate the E. coli transcription state across a subset of all possible environments, comparing our results to published gene expression data as validation. Finally, we present novel in silico findings for the E. coli TRS, including (1 a gene expression correlation matrix delineating functional motifs; (2 sets of gene ontologies for which regulatory rules governing gene transcription are poorly understood and which may direct further experimental characterization; and (3 the appearance of a distributed TRN structure, which is in stark contrast to the more hierarchical organization of metabolic networks.

  1. Functional states of the genome-scale Escherichia coli transcriptional regulatory system.

    Science.gov (United States)

    Gianchandani, Erwin P; Joyce, Andrew R; Palsson, Bernhard Ø; Papin, Jason A

    2009-06-01

    A transcriptional regulatory network (TRN) constitutes the collection of regulatory rules that link environmental cues to the transcription state of a cell's genome. We recently proposed a matrix formalism that quantitatively represents a system of such rules (a transcriptional regulatory system [TRS]) and allows systemic characterization of TRS properties. The matrix formalism not only allows the computation of the transcription state of the genome but also the fundamental characterization of the input-output mapping that it represents. Furthermore, a key advantage of this "pseudo-stoichiometric" matrix formalism is its ability to easily integrate with existing stoichiometric matrix representations of signaling and metabolic networks. Here we demonstrate for the first time how this matrix formalism is extendable to large-scale systems by applying it to the genome-scale Escherichia coli TRS. We analyze the fundamental subspaces of the regulatory network matrix (R) to describe intrinsic properties of the TRS. We further use Monte Carlo sampling to evaluate the E. coli transcription state across a subset of all possible environments, comparing our results to published gene expression data as validation. Finally, we present novel in silico findings for the E. coli TRS, including (1) a gene expression correlation matrix delineating functional motifs; (2) sets of gene ontologies for which regulatory rules governing gene transcription are poorly understood and which may direct further experimental characterization; and (3) the appearance of a distributed TRN structure, which is in stark contrast to the more hierarchical organization of metabolic networks.

  2. INFOGRAPHIC MODELING OF THE HIERARCHICAL STRUCTURE OF THE MANAGEMENT SYSTEM EXPOSED TO AN INNOVATIVE CONFLICT

    OpenAIRE

    Chulkov Vitaliy Olegovich; Rakhmonov Emomali Karimovich; Kas'yanov Vitaliy Fedorovich; Gusakova Elena Aleksandrovna

    2012-01-01

    This article deals with the infographic modeling of hierarchical management systems exposed to innovative conflicts. The authors analyze the facts that serve as conflict drivers in the construction management environment. The reasons for innovative conflicts include changes in hierarchical structures of management systems, adjustment of workers to new management conditions, changes in the ideology, etc. Conflicts under consideration may involve contradictions between requests placed by custom...

  3. Hierarchical Cellular Structures in High-Capacity Cellular Communication Systems

    CERN Document Server

    Jain, R K; Agrawal, N K

    2011-01-01

    In the prevailing cellular environment, it is important to provide the resources for the fluctuating traffic demand exactly in the place and at the time where and when they are needed. In this paper, we explored the ability of hierarchical cellular structures with inter layer reuse to increase the capacity of mobile communication network by applying total frequency hopping (T-FH) and adaptive frequency allocation (AFA) as a strategy to reuse the macro and micro cell resources without frequency planning in indoor pico cells [11]. The practical aspects for designing macro- micro cellular overlays in the existing big urban areas are also explained [4]. Femto cells are inducted in macro / micro / pico cells hierarchical structure to achieve the required QoS cost effectively.

  4. Bayesian Hierarchical Models to Augment the Mediterranean Forecast System

    Science.gov (United States)

    2016-06-07

    year. Our goal is to develop an ensemble ocean forecast methodology, using Bayesian Hierarchical Modelling (BHM) tools . The ocean ensemble forecast...from above); i.e. we assume Ut ~ Z Λt1/2. WORK COMPLETED The prototype MFS-Wind-BHM was designed and implemented based on stochastic...coding refinements we implemented on the prototype surface wind BHM. A DWF event in February 2005, in the Gulf of Lions, was identified for reforecast

  5. Genome-Wide Mapping of Collier In Vivo Binding Sites Highlights Its Hierarchical Position in Different Transcription Regulatory Networks.

    Directory of Open Access Journals (Sweden)

    Mathilde de Taffin

    Full Text Available Collier, the single Drosophila COE (Collier/EBF/Olf-1 transcription factor, is required in several developmental processes, including head patterning and specification of muscle and neuron identity during embryogenesis. To identify direct Collier (Col targets in different cell types, we used ChIP-seq to map Col binding sites throughout the genome, at mid-embryogenesis. In vivo Col binding peaks were associated to 415 potential direct target genes. Gene Ontology analysis revealed a strong enrichment in proteins with DNA binding and/or transcription-regulatory properties. Characterization of a selection of candidates, using transgenic CRM-reporter assays, identified direct Col targets in dorso-lateral somatic muscles and specific neuron types in the central nervous system. These data brought new evidence that Col direct control of the expression of the transcription regulators apterous and eyes-absent (eya is critical to specifying neuronal identities. They also showed that cross-regulation between col and eya in muscle progenitor cells is required for specification of muscle identity, revealing a new parallel between the myogenic regulatory networks operating in Drosophila and vertebrates. Col regulation of eya, both in specific muscle and neuronal lineages, may illustrate one mechanism behind the evolutionary diversification of Col biological roles.

  6. Strengthening the Canadian alcohol advertising regulatory system.

    Science.gov (United States)

    Heung, Carly M; Rempel, Benjamin; Krank, Marvin

    2012-05-24

    Research evidence points to harmful effects from alcohol advertising among children and youth. In particular, exposure to alcohol advertising has been associated with adolescents drinking both earlier and heavier. Although current federal and provincial guidelines have addressed advertising practices to prevent underage drinking, practice has not been supported by existing policy. While protective measures such as social marketing campaigns have the potential for counteracting the effects from alcohol advertising, the effectiveness of such measures can be easily drowned out with increasing advertising activities from the alcohol industry, especially without effective regulation. Research reviewed by the European Focus on Alcohol Safe Environment (FASE) Project has identified a set of key elements that are necessary to make alcohol advertising policy measures effective at protecting children and youth from the harmful effects of alcohol marketing. Using these key elements as an evaluation framework, there are critical components in the Canadian alcohol advertising regulatory system that clearly require strengthening. To protect impressionable children and youth against the harmful effects of alcohol advertising, 13 recommendations to strengthen current alcohol advertising regulations in Canada are provided for Canadian policy-makers, advertising standard agencies, and public health groups.

  7. Developing a Small Business Regulatory System

    Directory of Open Access Journals (Sweden)

    Geoff Miller

    2014-09-01

    Full Text Available IntroductionThank you for inviting me to share my thoughts on what the government is doing to reduce the burden on small business. I also look forward to hearing the other speakers talk about how to make the regulatory system more responsive and relevant to business needs.It is more than a year since the fall of Lehman Brothers and the beginning of the Australian Government’s response to the global financial crisis.Today, the Australian economy is showing encouraging signs of recovery. The Government’s policy responses have been largely responsible for placing Australia in a better position than most countries around the world.The Mid-Year Economic and Fiscal Outlook (MYEFO (released earlier this month showed that the economy is performing much better than was forecast in the last Budget — MYEFO shows that Australia is the only advanced economy to have recorded positive growth through the year to June 2009. MYEFO also upgraded the growth forecasts for the following two years with consequental falls in the expected peak unemployment rate.Although this is good news, the GFC has clearly affected, and is continuing to impact on, small business.A number of Australian Chamber of Commerce and Industry surveys have reported large falls in small business confidence and conditions throughout 2008 and early 2009. However, the August ACCI Small Business Survey reports that, while conditions for small business are expected to remain challenging, conditions are stabilising.This good news is supported by the most recent Commonwealth Bank – ACCI Business Expectations Survey, which shows that small, medium and large businesses are expecting business conditions to improve significantly during this quarter.It is true that small businesses succeed or fail on the creativity, ingenuity, innovation and imagination of their owners and staff. It is also true that small businesses are notoriously time poor. When considering ways to improve the regulatory

  8. Preventing Distribution Grid Congestion by Integrating Indirect Control in a Hierarchical Electric Vehicles Management System

    DEFF Research Database (Denmark)

    Hu, Junjie; Si, Chengyong; Lind, Morten

    2016-01-01

    In this paper, a hierarchical management system is proposed to integrate electric vehicles (EVs) into a distribution grid. Three types of actors are included in the system: Distribution system operators (DSOs), Fleet operators (FOs) and EV owners. In contrast to a typical hierarchical control...... system where the upper level controller directly controls the lower level subordinated nodes, this study aims to integrate two common indirect control methods:market-based control and price-based control into the hierarchical electric vehicles management system. Specifically, on the lower level...... of the hierarchy, the FOs coordinate the charging behaviors of their EV users using a price-based control method. A parametric utility model is used on the lower level to characterize price elasticity of electric vehicles and thus used by the FO to coordinate the individual EV charging. On the upper level...

  9. Hierarchical Distributed Control Design for Multi-agent Systems Using Approximate Simulation

    Institute of Scientific and Technical Information of China (English)

    TANG Yu-Tao; HONG Yi-Guang

    2013-01-01

    In this paper,we consider a hierarchical control design for multi-agent systems based on approximate simulation.To reduce complexity,we first construct a simple abstract system to guide the agents,then we discuss the simulation relations between the abstract system and multiple agents.With the help of this abstract system,distributed hierarchical control is proposed to complete a coordination task.By virtue of a common Lyapunov function,we analyze the collective behaviors with switching multi-agent topology in light of simulation functions.

  10. Universal hierarchical symmetry for turbulence and general multi-scale fluctuation systems

    Institute of Scientific and Technical Information of China (English)

    Zhen-Su She; Zhi-Xiong Zhang

    2009-01-01

    Scaling is an important measure of multi-scale fluctuation systems. Turbulence as the most remarkable multi-scale system possesses scaling over a wide range of scales. She-Leveque (SL) hierarchical symmetry, since its publication in 1994, has received wide attention. A num-ber of experimental, numerical and theoretical work have been devoted to its verification, extension, and modification. Application to the understanding of magnetohydrodynamic turbulence, motions of cosmic baryon fluids, cosmological supersonic turbulence, natural image, spiral turbulent patterns, DNA anomalous composition, human heart vari-ability are just a few among the most successful examples. A number of modified scaling laws have been derived in the framework of the hierarchical symmetry, and the SL model parameters are found to reveal both the organizational order of the whole system and the properties of the most signif-icant fluctuation structures. A partial set of work related to these studies are reviewed. Particular emphasis is placed on the nature of the hierarchical symmetry. It is suggested that the SL hierarchical symmetry is a new form of the self-orga-nization principle for multi-scale fluctuation systems, and can be employed as a standard analysis tool in the general multi-scale methodology. It is further suggested that the SL hierarchical symmetry implies the existence of a turbulence ensemble. It is speculated that the search for defining the turbulence ensemble might open a new way for deriving sta-tistical closure equations for turbulence and other multi-scale fluctuation systems.

  11. Hierarchic Theory of Complex Systems (biosystems, colloids): self-organization & osmos

    OpenAIRE

    Kaivarainen, Alex

    2000-01-01

    1. Protein domain mesoscopic organization 2. Quantum background of lipid domain organization in biomembranes 3. Hierarchic approach to theory of solutions and colloid systems 4. Distant solvent-mediated interaction between macromolecules 5. Spatial self-organization in the water-macromolecular systems 6. Properties of [bisolvent - polymer system] 7. Osmosis and solvent activity. Traditional and mesoscopic approach

  12. An Efficient OpenMP Runtime System for Hierarchical Arch

    CERN Document Server

    Thibault, Samuel; Goglin, Brice; Namyst, Raymond; Wacrenier, Pierre-André

    2007-01-01

    Exploiting the full computational power of always deeper hierarchical multiprocessor machines requires a very careful distribution of threads and data among the underlying non-uniform architecture. The emergence of multi-core chips and NUMA machines makes it important to minimize the number of remote memory accesses, to favor cache affinities, and to guarantee fast completion of synchronization steps. By using the BubbleSched platform as a threading backend for the GOMP OpenMP compiler, we are able to easily transpose affinities of thread teams into scheduling hints using abstractions called bubbles. We then propose a scheduling strategy suited to nested OpenMP parallelism. The resulting preliminary performance evaluations show an important improvement of the speedup on a typical NAS OpenMP benchmark application.

  13. Application of Parallel Tabu Search Based Hierarchical Optimization to Distribution System Service Restoration

    Science.gov (United States)

    Furuta, Atsuhiro; Mori, Hiroyuki

    This paper proposes a hybrid method of hierarchical optimization and Parallel Tabu Search (PTS) for distribution system service restoration with distributed generators. The objective is to evaluate the optimal route to recover the service. The improvement of power quality makes the service restoration more important. Distribution system service restoration is one of complicated combinational optimization problems that are expressed as nonlinear mixed integer programming. In this paper, an efficient method is proposed to restore the service in a hierarchical optimization with Parallel Tabu Search. The proposed method is tested in a sample system.

  14. Hierarchical maximum entropy principle for generalized superstatistical systems and Bose-Einstein condensation of light.

    Science.gov (United States)

    Sob'yanin, Denis Nikolaevich

    2012-06-01

    A principle of hierarchical entropy maximization is proposed for generalized superstatistical systems, which are characterized by the existence of three levels of dynamics. If a generalized superstatistical system comprises a set of superstatistical subsystems, each made up of a set of cells, then the Boltzmann-Gibbs-Shannon entropy should be maximized first for each cell, second for each subsystem, and finally for the whole system. Hierarchical entropy maximization naturally reflects the sufficient time-scale separation between different dynamical levels and allows one to find the distribution of both the intensive parameter and the control parameter for the corresponding superstatistics. The hierarchical maximum entropy principle is applied to fluctuations of the photon Bose-Einstein condensate in a dye microcavity. This principle provides an alternative to the master equation approach recently applied to this problem. The possibility of constructing generalized superstatistics based on a statistics different from the Boltzmann-Gibbs statistics is pointed out.

  15. Coarse-Graining Parameterization and Multiscale Simulation of Hierarchical Systems. Part I: Theory and Model Formulation

    Science.gov (United States)

    2010-01-01

    can also refer to hierarchical parameterization transcending any scale, such as mesoscopic to continuum levels. Such a multiscale modeling paradigm ...particularly suited for systems defined by long-chain polymers with relatively short persistence lengths, or systems that are entropically driven...mechanics. Thus, we introduce a universal framework through a finer-trains-coarser multiscale paradigm , which effectively defines coarse- grain

  16. Distributed Hierarchical Control of Multi-Area Power Systems with Improved Primary Frequency Regulation

    Energy Technology Data Exchange (ETDEWEB)

    Lian, Jianming; Marinovici, Laurentiu D.; Kalsi, Karanjit; Du, Pengwei; Elizondo, Marcelo A.

    2012-12-12

    The conventional distributed hierarchical control architecture for multi-area power systems is revisited. In this paper, a new distributed hierarchical control architecture is proposed. In the proposed architecture, pilot generators are selected in each area to be equipped with decentralized robust control as a supplementary to the conventional droop speed control. With the improved primary frequency control, the system frequency can be restored to the nominal value without the help of secondary frequency control, which reduces the burden of the automatic generation control for frequency restoration. Moreover, the low frequency inter-area electromechanical oscillations can also be effectively damped. The effectiveness of the proposed distributed hierarchical control architecture is validated through detailed simulations.

  17. Multilevel compression of random walks on networks reveals hierarchical organization in large integrated systems

    CERN Document Server

    Rosvall, M

    2010-01-01

    To comprehend the hierarchical organization of large integrated systems, we introduce the hierarchical map equation that reveals multilevel structures in networks. In this information-theoretic approach, we exploit the duality between compression and pattern detection; by compressing a description of a random walker as a proxy for real flow on a network, we find regularities in the network that induce this system-wide flow. Finding the shortest multilevel description of the random walker therefore gives us the best hierarchical clustering of the network, the optimal number of levels and modular partition at each level, with respect to the dynamics on the network. With a novel search algorithm, we extract and illustrate the rich multilevel organization of several large social and biological networks. For example, from the global air traffic network we uncover countries and continents, and from the pattern of scientific communication we reveal more than 100 scientific fields organized in four major disciplines:...

  18. [Division of regulatory cellular systems (Lvov)].

    Science.gov (United States)

    Kusen', S I

    1995-01-01

    Two departments of the A. V. Palladin Institute of Biochemistry of the National Academy of Sciences of Ukraine were founded in 1969 in Lviv. These were: the Department of Biochemistry of Cell Differentiation headed by Professor S. I. Kusen and Department of Regulation of Cellular Synthesis of Low Molecular Weight Compounds headed by Professor G. M. Shavlovsky. The Lviv Division of the A. V. Palladin Institute of Biochemistry of the National Academy of Sciences of Ukraine with Professor S. I. Kusen as its chief, was founded in 1974 on the basis of these departments and the Laboratory of Modelling of Regulatory Cellular Systems headed by Professor M. P. Derkach. The above mentioned laboratory which was not the structural unit obtained the status of Structural Laboratory of Cellular Biophysics in 1982 and was headed by O. A. Goida, Candidate of biological sciences. From 1983 the Laboratory of Correcting Therapy of Malignant Tumors and Hemoblastoses at the Institute of Molecular Biology and Genetics, Academy of Sciences of Ukraine (Chief--S. V. Ivasivka, Candidate of medical sciences) was included in the structure of the Division. That Laboratory was soon transformed into the Department of Carbohydrate Metabolism Regulation headed by Professor I. D. Holovatsky. In 1988 this Department was renamed into the Department of Glycoprotein Biochemistry and headed by M. D. Lutsik, Doctor of biological sciences. In 1982 one more Laboratory of Biochemical Genetics was founded at the Department of Regulation of Cellular Synthesis of Low Molecular Weight Compounds, in 1988 it was transformed into the Department of Biochemical Genetics (Chief--Professor A. A. Sibirny). In 1989 the Laboratory of Anion Transport was taken from A. V. Palladin Institute of Biochemistry, Academy of Sciences of Ukraine to Lviv Division of this Institute. This laboratory was headed by Professor M. M. Veliky. One more reorganization in the Division structure took place in 1994. The Department of

  19. Comparing genomes to computer operating systems in terms of the topology and evolution of their regulatory control networks.

    Science.gov (United States)

    Yan, Koon-Kiu; Fang, Gang; Bhardwaj, Nitin; Alexander, Roger P; Gerstein, Mark

    2010-05-18

    The genome has often been called the operating system (OS) for a living organism. A computer OS is described by a regulatory control network termed the call graph, which is analogous to the transcriptional regulatory network in a cell. To apply our firsthand knowledge of the architecture of software systems to understand cellular design principles, we present a comparison between the transcriptional regulatory network of a well-studied bacterium (Escherichia coli) and the call graph of a canonical OS (Linux) in terms of topology and evolution. We show that both networks have a fundamentally hierarchical layout, but there is a key difference: The transcriptional regulatory network possesses a few global regulators at the top and many targets at the bottom; conversely, the call graph has many regulators controlling a small set of generic functions. This top-heavy organization leads to highly overlapping functional modules in the call graph, in contrast to the relatively independent modules in the regulatory network. We further develop a way to measure evolutionary rates comparably between the two networks and explain this difference in terms of network evolution. The process of biological evolution via random mutation and subsequent selection tightly constrains the evolution of regulatory network hubs. The call graph, however, exhibits rapid evolution of its highly connected generic components, made possible by designers' continual fine-tuning. These findings stem from the design principles of the two systems: robustness for biological systems and cost effectiveness (reuse) for software systems.

  20. Towards Legal Knowledge Management Systems for Regulatory Compliance

    NARCIS (Netherlands)

    Boella, G.; Hulstijn, J.; Humphreys, L.; Janssen, M.F.W.H.A.; Van der Torre, L.

    2012-01-01

    Maintaining regulatory compliance is an increasing concern. Legal Knowledge Management systems could support the work of compliance managers. However, there are challenges to overcome, of interpreting legal knowledge and mapping it onto business processes. In this discussion paper we determine

  1. Contribution of a fuzzy expert system to regulatory impact analysis

    Directory of Open Access Journals (Sweden)

    Marco Antônio da Cunha

    2015-09-01

    Full Text Available Regulatory Impact Analysis (RIA has been consolidating in Brazilian regulatory agencies throughout the last decades. The RIA methodology aims to examine the regulatory process, measure the costs and benefits generated, as well as other effects of social, political or economic nature caused by a new or an existing regulation. By analysing each regulatory option, the expert or regulator faces a myriad of variables, usually of qualitative nature, that are difficult to measure and with a high degree of uncertainty. This research complements the existing literature, given the scarcity of decision support models in RIA that – regardless of the problem treated – incorporate the tacit knowledge of the regulation expert. This paper proposes an exploratory approach using a Fuzzy Expert System, which therefore helps to enrich the decision process in the final stage of comparison of the regulatory options.

  2. Exact dynamics of dissipative electronic systems and quantum transport: Hierarchical equations of motion approach.

    Science.gov (United States)

    Jin, Jinshuang; Zheng, Xiao; Yan, YiJing

    2008-06-21

    A generalized quantum master equation theory that governs the exact, nonperturbative quantum dissipation and quantum transport is formulated in terms of hierarchically coupled equations of motion for an arbitrary electronic system in contact with electrodes under either a stationary or a nonstationary electrochemical potential bias. The theoretical construction starts with the influence functional in path integral, in which the electron creation and annihilation operators are Grassmann variables. Time derivatives on the influence functionals are then performed in a hierarchical manner. Both the multiple-frequency dispersion and the non-Markovian reservoir parametrization schemes are considered for the desired hierarchy construction. The resulting hierarchical equations of motion formalism is in principle exact and applicable to arbitrary electronic systems, including Coulomb interactions, under the influence of arbitrary time-dependent applied bias voltage and external fields. Both the conventional quantum master equation and the real-time diagrammatic formalism of Schon and co-workers can be readily obtained at well defined limits of the present theory. We also show that for a noninteracting electron system, the present hierarchical equations of motion formalism terminates at the second tier exactly, and the Landuer-Buttiker transport current expression is recovered. The present theory renders an exact and numerically tractable tool to evaluate various transient and stationary quantum transport properties of many-electron systems, together with the involving nonperturbative dissipative dynamics.

  3. Multilevel compression of random walks on networks reveals hierarchical organization in large integrated systems.

    Directory of Open Access Journals (Sweden)

    Martin Rosvall

    Full Text Available To comprehend the hierarchical organization of large integrated systems, we introduce the hierarchical map equation, which reveals multilevel structures in networks. In this information-theoretic approach, we exploit the duality between compression and pattern detection; by compressing a description of a random walker as a proxy for real flow on a network, we find regularities in the network that induce this system-wide flow. Finding the shortest multilevel description of the random walker therefore gives us the best hierarchical clustering of the network--the optimal number of levels and modular partition at each level--with respect to the dynamics on the network. With a novel search algorithm, we extract and illustrate the rich multilevel organization of several large social and biological networks. For example, from the global air traffic network we uncover countries and continents, and from the pattern of scientific communication we reveal more than 100 scientific fields organized in four major disciplines: life sciences, physical sciences, ecology and earth sciences, and social sciences. In general, we find shallow hierarchical structures in globally interconnected systems, such as neural networks, and rich multilevel organizations in systems with highly separated regions, such as road networks.

  4. Optimal coupling of heat and electricity systems: A stochastic hierarchical approach

    DEFF Research Database (Denmark)

    Mitridati, Lesia Marie-Jeanne Mariane; Pinson, Pierre

    2016-01-01

    already exist due to the participation of CHPs in both markets. New market structures must be developed in order to exploit these synergies. Recognizing the above-mentioned challenges this paper proposes a stochastic hierarchical formulation of the heat economic dispatch problem in a system with high...

  5. Priming Effects Associated with the Hierarchical Levels of Classification Systems

    Science.gov (United States)

    Loehrlein, Aaron J.

    2012-01-01

    The act of categorization produces conceptual representations in memory while knowledge organization (KO) systems provide conceptual representations that are used in information storage and retrieval systems. Previous research has explored how KO systems can be designed to resemble the user's internal conceptual structures. However, the more…

  6. Priming Effects Associated with the Hierarchical Levels of Classification Systems

    Science.gov (United States)

    Loehrlein, Aaron J.

    2012-01-01

    The act of categorization produces conceptual representations in memory while knowledge organization (KO) systems provide conceptual representations that are used in information storage and retrieval systems. Previous research has explored how KO systems can be designed to resemble the user's internal conceptual structures. However, the more…

  7. TOWARD HIGHLY SECURE AND AUTONOMIC COMPUTING SYSTEMS: A HIERARCHICAL APPROACH

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Hsien-Hsin S

    2010-05-11

    The overall objective of this research project is to develop novel architectural techniques as well as system software to achieve a highly secure and intrusion-tolerant computing system. Such system will be autonomous, self-adapting, introspective, with self-healing capability under the circumstances of improper operations, abnormal workloads, and malicious attacks. The scope of this research includes: (1) System-wide, unified introspection techniques for autonomic systems, (2) Secure information-flow microarchitecture, (3) Memory-centric security architecture, (4) Authentication control and its implication to security, (5) Digital right management, (5) Microarchitectural denial-of-service attacks on shared resources. During the period of the project, we developed several architectural techniques and system software for achieving a robust, secure, and reliable computing system toward our goal.

  8. Hierarchical Architecture for Enterprise Information System under Dynamic Environment

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    In a dynamic environment, it is vital for enterpris e to have flexible information system architecture to integrate ERP, Supply Chain Management (SCM) and E-Commerce (EC). The traditional systems are established o n the ERP-centered flat architecture. This architecture has some disadvantages in supporting the dynamics of enterprises. Firstly, ERP is already a very expens ive and complex system; the extension based on it can only increase the complexi ty and make the implementation more expensive and risk...

  9. INFOGRAPHIC MODELING OF THE HIERARCHICAL STRUCTURE OF THE MANAGEMENT SYSTEM EXPOSED TO AN INNOVATIVE CONFLICT

    Directory of Open Access Journals (Sweden)

    Chulkov Vitaliy Olegovich

    2012-12-01

    Full Text Available This article deals with the infographic modeling of hierarchical management systems exposed to innovative conflicts. The authors analyze the facts that serve as conflict drivers in the construction management environment. The reasons for innovative conflicts include changes in hierarchical structures of management systems, adjustment of workers to new management conditions, changes in the ideology, etc. Conflicts under consideration may involve contradictions between requests placed by customers and the legislation, any risks that may originate from the above contradiction, conflicts arising from any failure to comply with any accepted standards of conduct, etc. One of the main objectives of the theory of hierarchical structures is to develop a model capable of projecting potential innovative conflicts. Models described in the paper reflect dynamic changes in patterns of external impacts within the conflict area. The simplest model element is a monad, or an indivisible set of characteristics of participants at the pre-set level. Interaction between two monads forms a diad. Modeling of situations that involve a different number of monads, diads, resources and impacts can improve methods used to control and manage hierarchical structures in the construction industry. However, in the absence of any mathematical models employed to simulate conflict-related events, processes and situations, any research into, projection and management of interpersonal and group-to-group conflicts are to be performed in the legal environment

  10. Combining Adaptive Coding and Modulation with Hierarchical Modulation in Satcom Systems

    CERN Document Server

    Meric, Hugo; Arnal, Fabrice; Lesthievent, Guy; Boucheret, Marie-Laure

    2011-01-01

    We investigate the design of a broadcast system in order to maximise the throughput. This task is usually challenging due to the channel variability. Forty years ago, Cover introduced and compared two schemes: time sharing and superposition coding. Even if the second scheme was proved to be optimal for some channels, modern satellite communications systems such as DVB-SH and DVB-S2 mainly rely on time sharing strategy to optimize the throughput. They consider hierarchical modulation, a practical implementation of superposition coding, but only for unequal error protection or backward compatibility purposes. We propose in this article to combine time sharing and hierarchical modulation together and show how this scheme can improve the performance in terms of available rate. We introduce the hierarchical 16-APSK to boost the performance of the DVB-S2 standard. We also evaluate various strategies to group the receivers in pairs when using hierarchical modulation. Finally, we show in a realistic use case based on...

  11. Bioattractors: dynamical systems theory and the evolution of regulatory processes.

    Science.gov (United States)

    Jaeger, Johannes; Monk, Nick

    2014-06-01

    In this paper, we illustrate how dynamical systems theory can provide a unifying conceptual framework for evolution of biological regulatory systems. Our argument is that the genotype-phenotype map can be characterized by the phase portrait of the underlying regulatory process. The features of this portrait--such as attractors with associated basins and their bifurcations--define the regulatory and evolutionary potential of a system. We show how the geometric analysis of phase space connects Waddington's epigenetic landscape to recent computational approaches for the study of robustness and evolvability in network evolution. We discuss how the geometry of phase space determines the probability of possible phenotypic transitions. Finally, we demonstrate how the active, self-organizing role of the environment in phenotypic evolution can be understood in terms of dynamical systems concepts. This approach yields mechanistic explanations that go beyond insights based on the simulation of evolving regulatory networks alone. Its predictions can now be tested by studying specific, experimentally tractable regulatory systems using the tools of modern systems biology. A systematic exploration of such systems will enable us to understand better the nature and origin of the phenotypic variability, which provides the substrate for evolution by natural selection.

  12. Hierarchical control of procedural and declarative category-learning systems.

    Science.gov (United States)

    Turner, Benjamin O; Crossley, Matthew J; Ashby, F Gregory

    2017-02-16

    Substantial evidence suggests that human category learning is governed by the interaction of multiple qualitatively distinct neural systems. In this view, procedural memory is used to learn stimulus-response associations, and declarative memory is used to apply explicit rules and test hypotheses about category membership. However, much less is known about the interaction between these systems: how is control passed between systems as they interact to influence motor resources? Here, we used fMRI to elucidate the neural correlates of switching between procedural and declarative categorization systems. We identified a key region of the cerebellum (left Crus I) whose activity was bidirectionally modulated depending on switch direction. We also identified regions of the default mode network (DMN) that were selectively connected to left Crus I during switching. We propose that the cerebellum-in coordination with the DMN-serves a critical role in passing control between procedural and declarative memory systems.

  13. Intrusion Detection System with Hierarchical Different Parallel Classification

    Directory of Open Access Journals (Sweden)

    Behrouz Safaiezadeh

    2015-12-01

    Full Text Available Todays, lives integrated to networks and internet. The needed information is transmitted through networks. So, someone may attempt to abuse the information and attack and make changes by weakness of networks. Intrusion Detection System is a system capable to detect some attacks. The system detects attacks through classifier construction and considering IP in network. The recent researches showed that a fundamental classification cannot be effective lonely and due to its errors, but mixing some classifications provide better efficiency. So, the current study attempt to design three classes of support vector machine, the neural network of multilayer perceptron and parallel fuzzy system in which there are trained dataset and capability to detect two classes. Finally, decisions made by an intermediate network due to type of attack. In the present research, suggested system tested through dataset of KDD99 and results indicated appropriate efficiency 99.71% in average.

  14. Determining the Bayesian optimal sampling strategy in a hierarchical system.

    Energy Technology Data Exchange (ETDEWEB)

    Grace, Matthew D.; Ringland, James T.; Boggs, Paul T.; Pebay, Philippe Pierre

    2010-09-01

    Consider a classic hierarchy tree as a basic model of a 'system-of-systems' network, where each node represents a component system (which may itself consist of a set of sub-systems). For this general composite system, we present a technique for computing the optimal testing strategy, which is based on Bayesian decision analysis. In previous work, we developed a Bayesian approach for computing the distribution of the reliability of a system-of-systems structure that uses test data and prior information. This allows for the determination of both an estimate of the reliability and a quantification of confidence in the estimate. Improving the accuracy of the reliability estimate and increasing the corresponding confidence require the collection of additional data. However, testing all possible sub-systems may not be cost-effective, feasible, or even necessary to achieve an improvement in the reliability estimate. To address this sampling issue, we formulate a Bayesian methodology that systematically determines the optimal sampling strategy under specified constraints and costs that will maximally improve the reliability estimate of the composite system, e.g., by reducing the variance of the reliability distribution. This methodology involves calculating the 'Bayes risk of a decision rule' for each available sampling strategy, where risk quantifies the relative effect that each sampling strategy could have on the reliability estimate. A general numerical algorithm is developed and tested using an example multicomponent system. The results show that the procedure scales linearly with the number of components available for testing.

  15. Decision support in hierarchical planning systems: The case of procurement planning in oil refining industries

    DEFF Research Database (Denmark)

    Kallestrup, Kasper Bislev; Lynge, Lasse Hadberg; Akkerman, Renzo;

    2014-01-01

    In this paper, we discuss the development of decision support systems for hierarchically structured planning approaches, such as commercially available advanced planning systems. We develop a framework to show how such a decision support system can be designed with the existing organization in mind......, and how a decision process and corresponding software can be developed from this basis. Building on well-known hierarchical planning concepts, we include the typical anticipation mechanisms used in such systems to be able to decompose planning problems, both from the perspective of the planning problem...... and from the perspective of the organizational aspects involved. To exemplify and develop our framework, we use a case study of crude oil procurement planning in the refining industry. The results of the case study indicate an improved organizational embedding of the DSS, leading to significant savings...

  16. The Case for A Hierarchal System Model for Linux Clusters

    Energy Technology Data Exchange (ETDEWEB)

    Seager, M; Gorda, B

    2009-06-05

    The computer industry today is no longer driven, as it was in the 40s, 50s and 60s, by High-performance computing requirements. Rather, HPC systems, especially Leadership class systems, sit on top of a pyramid investment mode. Figure 1 shows a representative pyramid investment model for systems hardware. At the base of the pyramid is the huge investment (order 10s of Billions of US Dollars per year) in semiconductor fabrication and process technologies. These costs, which are approximately doubling with every generation, are funded from investments multiple markets: enterprise, desktops, games, embedded and specialized devices. Over and above these base technology investments are investments for critical technology elements such as microprocessor, chipsets and memory ASIC components. Investments for these components are spread across the same markets as the base semiconductor processes investments. These second tier investments are approximately half the size of the lower level of the pyramid. The next technology investment layer up, tier 3, is more focused on scalable computing systems such as those needed for HPC and other markets. These tier 3 technology elements include networking (SAN, WAN and LAN), interconnects and large scalable SMP designs. Above these is tier 4 are relatively small investments necessary to build very large, scalable systems high-end or Leadership class systems. Primary among these are the specialized network designs of vertically integrated systems, etc.

  17. Exporting Variables in a Hierarchically Distributed Control System

    Energy Technology Data Exchange (ETDEWEB)

    Chamizo Llatas, M.

    1995-07-01

    We describe the Remote Variable Access Service (RVAS), a network service developed and used in the distributed control and monitoring system of the TJ-II Heliac, which is under construction at CIEMAT (Madrid, Spain) and devoted to plasma studies in the nuclear fusion field. The architecture of the TJ-II control system consists of one central Sun workstation Sparc 10 and several autonomous subsystems based on VME crates with embedded processors running the OS-9 (V.24) real time operating system. The RVAS service allows state variables in local control processes running in subsystems to be exported to remote processes running in the central control workstation. Thus we extend the concept of exporting of file systems in UNIX machines to variables in processes running in different machines. (Author) 6 refs.

  18. A Hierarchical Reputation Evidence Decision System in VANETs

    National Research Council Canada - National Science Library

    Yang, Yang; Gao, Zhipeng; Qiu, Xuesong; Liu, Qian; Hao, Yuwen; Zheng, Jingchen

    2015-01-01

    In VANETs, users are rational, independent, and selfish. Stimulation-based reputation management system is critical for them to avoid selfishness and promote network performance in large-scale VANETs...

  19. Hierarchical Intelligent Data Fusion Architecture for System Health Management Project

    Data.gov (United States)

    National Aeronautics and Space Administration — The complexity of modern systems and the stringent performance requirements for operation and uptime suggest that optimum and robust means must be deployed to make...

  20. Flexible System Integration and Advanced Hierarchical Control Architectures in the Microgrid Research Laboratory of Aalborg University

    DEFF Research Database (Denmark)

    Meng, Lexuan; Hernández, Adriana Carolina Luna; Diaz, Enrique Rodriguez

    2016-01-01

    This paper presents the system integration and hierarchical control implementation in an inverter-based microgrid research laboratory (MGRL) in Aalborg University, Denmark. MGRL aims to provide a flexible experimental platform for comprehensive studies of microgrids. The structure of the laboratory...... system supervision, advanced secondary and tertiary management are realized in a microgrid central controller. The software and hardware schemes are described. Several example case studies are introduced and performed in order to achieve power quality regulation, energy management and flywheel energy...

  1. Hierarchical system for autonomous sensing-healing of delamination in large-scale composite structures

    Science.gov (United States)

    Minakuchi, Shu; Sun, Denghao; Takeda, Nobuo

    2014-10-01

    This study combines our hierarchical fiber-optic-based delamination detection system with a microvascular self-healing material to develop the first autonomous sensing-healing system applicable to large-scale composite structures. In this combined system, embedded vascular modules are connected through check valves to a surface-mounted supply tube of a pressurized healing agent while fiber-optic-based sensors monitor the internal pressure of these vascular modules. When delamination occurs, the healing agent flows into the vascular modules breached by the delamination and infiltrates the damage for healing. At the same time, the pressure sensors identify the damaged modules by detecting internal pressure changes. This paper begins by describing the basic concept of the combined system and by discussing the advantages that arise from its hierarchical nature. The feasibility of the system is then confirmed through delamination infiltration tests. Finally, the hierarchical system is validated in a plate specimen by focusing on the detection and infiltration of the damage. Its self-diagnostic function is also demonstrated.

  2. Hierarchical algorithms of functional modelling for solution of optimal operation problems in electrical power systems

    Energy Technology Data Exchange (ETDEWEB)

    Makeechev, V.A. [Industrial Power Company, Krasnopresnenskaya Naberejnaya 12, 123610 Moscow (Russian Federation); Soukhanov, O.A. [Energy Systems Institute, 1 st Yamskogo Polya Street 15, 125040 Moscow (Russian Federation); Sharov, Y.V. [Moscow Power Engineering Institute, Krasnokazarmennaya Street 14, 111250 Moscow (Russian Federation)

    2008-07-15

    This paper presents foundations of the optimization method intended for solution of power systems operation problems and based on the principles of functional modeling (FM). This paper also presents several types of hierarchical FM algorithms for economic dispatch in these systems derived from this method. According to the FM method a power system is represented by hierarchical model consisting of systems of equations of lower (subsystem) levels and higher level system of connection equations (SCE), in which only boundary variables of subsystems are present. Solution of optimization problem in accordance with the FM method consists of the following operations: (1) solution of optimization problem for each subsystem (values of boundary variables for subsystems should be determined on the higher level of model); (2) calculation of functional characteristic (FC) of each subsystem, pertaining to state of subsystem on current iteration (these two steps are carried out on the lower level of the model); (3) formation and solution of the higher level system of equations (SCE), which gives values of boundary and supplementary boundary variables on current iteration. The key elements in the general structure of the FM method are FCs of subsystems, which represent them on the higher level of the model as ''black boxes''. Important advantage of hierarchical FM algorithms is that results obtained with them on each iteration are identical to those of corresponding basic one level algorithms. (author)

  3. Coordinated planning of preventive maintenance in hierarchical production systems

    NARCIS (Netherlands)

    van Dijkhuizen, G.C.; van Harten, Aart

    1997-01-01

    We consider a technical system consisting of multiple different components, which are all subject to failure. Creating an occasion for preventive maintenance on one of these components requires a collection of preparatory set-up activities to be carried out in advance, with corresponding set-up

  4. Hierarchical spin-orbital polarization of a giant Rashba system.

    Science.gov (United States)

    Bawden, Lewis; Riley, Jonathan M; Kim, Choong H; Sankar, Raman; Monkman, Eric J; Shai, Daniel E; Wei, Haofei I; Lochocki, Edward B; Wells, Justin W; Meevasana, Worawat; Kim, Timur K; Hoesch, Moritz; Ohtsubo, Yoshiyuki; Le Fèvre, Patrick; Fennie, Craig J; Shen, Kyle M; Chou, Fangcheng; King, Phil D C

    2015-09-01

    The Rashba effect is one of the most striking manifestations of spin-orbit coupling in solids and provides a cornerstone for the burgeoning field of semiconductor spintronics. It is typically assumed to manifest as a momentum-dependent splitting of a single initially spin-degenerate band into two branches with opposite spin polarization. Combining polarization-dependent and resonant angle-resolved photoemission measurements with density functional theory calculations, we show that the two "spin-split" branches of the model giant Rashba system BiTeI additionally develop disparate orbital textures, each of which is coupled to a distinct spin configuration. This necessitates a reinterpretation of spin splitting in Rashba-like systems and opens new possibilities for controlling spin polarization through the orbital sector.

  5. Robust Hierarchical Control for Uncertain Multivariable Hexarotor Systems

    Directory of Open Access Journals (Sweden)

    Wei Lin

    2015-01-01

    Full Text Available Multirotor helicopter attracts more attention due to its increased load capacity and being highly maneuverable. However, these helicopters are uncertain multivariable systems, which pose a challenge for their robust controller design. In this paper, a robust two-loop control scheme is proposed for a hexarotor system. The resulted controller consists of a nominal controller and a robust compensator. The robust compensators are added to restrain the influences of uncertainties such as nonlinear dynamics, coupling, parametric uncertainties, and external disturbances. It is proven that the tracking errors are ultimately bounded with specified boundaries by choosing the parameters of the robust compensators. Simulation results on the hexarotor demonstrate the effectiveness of the proposed control method.

  6. Optimizing FORTRAN Programs for Hierarchical Memory Parallel Processing Systems

    Institute of Scientific and Technical Information of China (English)

    金国华; 陈福接

    1993-01-01

    Parallel loops account for the greatest amount of parallelism in numerical programs.Executing nested loops in parallel with low run-time overhead is thus very important for achieving high performance in parallel processing systems.However,in parallel processing systems with caches or local memories in memory hierarchies,“thrashing problemmay”may arise whenever data move back and forth between the caches or local memories in different processors.Previous techniques can only deal with the rather simple cases with one linear function in the perfactly nested loop.In this paper,we present a parallel program optimizing technique called hybri loop interchange(HLI)for the cases with multiple linear functions and loop-carried data dependences in the nested loop.With HLI we can easily eliminate or reduce the thrashing phenomena without reucing the program parallelism.

  7. An Isolation Intrusion Detection System for Hierarchical Wireless Sensor Networks

    OpenAIRE

    Rung-Ching Chen; Chia-Fen Hsieh; Yung-Fa Huang

    2010-01-01

    A wireless sensor network (WSN) is a wireless network consisting of spatially distributed autonomous devices using sensors to cooperatively monitor environmental conditions, such as battlefield data and personal health information, and some environment limited resources. To avoid malicious damage is important while information is transmitted in wireless network. Thus, Wireless Intrusion Detection Systems are crucial to safe operation in wireless sensor networks. Wireless networks are subject ...

  8. Intrusion Detection System Using Hierarchical GMM and Dimensionality Reduction

    Directory of Open Access Journals (Sweden)

    L. Maria Michael

    2012-07-01

    Full Text Available The focus of this chapter is to provide the effective intrusion detection technique to protect Web server. The IDS protects an server from malicious attacks from the Internet if someone tries to break in through the firewall and tries to have access on any system in the trusted side and alerts the system administrator in case there is a breach in security. Gaussian Mixture Models (GMMs are among the most statistically mature methods for clustering the data. Intrusion detection can be divided into anomaly detection and misuse detection. Misuse detection model is to collect behavioral features of non-normal operation and establish related feature library. In the existing system of anomaly based Intrusion Detection System, the work is based on the number of attacks on the network and using decision tree analysis for rule matching and grading. We are proposing an IDS approach that will use signature based and anomaly based identification scheme. And we are also proposing the rule pruning scheme with GMM(Gaussian Mixture Model. It does facilitate efficient way of handling large amount of rules. And we are planned to compare the performance of the IDS on different models. The Dimension Reduction focuses on using information obtained KDD Cup 99 data set for the selection of attributes to identify the type of attacks. The dimensionality reduction is performed on 41 attributes to 14 and 7 attributes based on Best First Search method and then apply the two classifying Algorithms ID3 and J48 Keywords-Intrusion detection, reliable networks, malicious routers, internet dependability, tolerance.

  9. Do marine natural products interfere with prokaryotic AHL regulatory systems?

    DEFF Research Database (Denmark)

    Kjelleberg, S.; Steinberg, P.; Givskov, Michael Christian

    1997-01-01

    signalling system. We demonstrate that halogenated furanones, a class of secondary metabolites produced by the Australian subtidal red alga DeLisea pulchra, interfere with the acylated homoserine lactone (AHL) regulatory system in several Gram-negative bacteria. Furanones were found to interfere with the AHL...

  10. Materials Knowledge Systems in Python - A Data Science Framework for Accelerated Development of Hierarchical Materials.

    Science.gov (United States)

    Brough, David B; Wheeler, Daniel; Kalidindi, Surya R

    2017-03-01

    There is a critical need for customized analytics that take into account the stochastic nature of the internal structure of materials at multiple length scales in order to extract relevant and transferable knowledge. Data driven Process-Structure-Property (PSP) linkages provide systemic, modular and hierarchical framework for community driven curation of materials knowledge, and its transference to design and manufacturing experts. The Materials Knowledge Systems in Python project (PyMKS) is the first open source materials data science framework that can be used to create high value PSP linkages for hierarchical materials that can be leveraged by experts in materials science and engineering, manufacturing, machine learning and data science communities. This paper describes the main functions available from this repository, along with illustrations of how these can be accessed, utilized, and potentially further refined by the broader community of researchers.

  11. A Multi-layer, Hierarchical Information Management System for the Smart Grid

    Energy Technology Data Exchange (ETDEWEB)

    Lu, Ning; Du, Pengwei; Paulson, Patrick R.; Greitzer, Frank L.; Guo, Xinxin; Hadley, Mark D.

    2011-10-10

    This paper presents the modeling approach, methodologies, and initial results of setting up a multi-layer, hierarchical information management system (IMS) for the smart grid. The IMS allows its users to analyze the data collected by multiple control and communication networks to characterize the states of the smart grid. Abnormal, corrupted, or erroneous measurement data and outliers are detected and analyzed to identify whether they are caused by random equipment failures, unintentional human errors, or deliberate tempering attempts. Data collected from different information networks are crosschecked for data integrity based on redundancy, dependency, correlation, or cross-correlations, which reveal the interdependency between data sets. A hierarchically structured reasoning mechanism is used to rank possible causes of an event to aid the system operators to proactively respond or provide mitigation recommendations to remove or neutralize the threats. The model provides satisfactory performance on identifying the cause of an event and significantly reduces the need of processing myriads of data collected.

  12. Resource discovery algorithm based on hierarchical model and Conscious search in Grid computing system

    Directory of Open Access Journals (Sweden)

    Nasim Nickbakhsh

    2017-03-01

    Full Text Available The distributed system of Grid subscribes the non-homogenous sources at a vast level in a dynamic manner. The resource discovery manner is very influential on the efficiency and of quality the system functionality. The “Bitmap” model is based on the hierarchical and conscious search model that allows for less traffic and low number of messages in relation to other methods in this respect. This proposed method is based on the hierarchical and conscious search model that enhances the Bitmap method with the objective to reduce traffic, reduce the load of resource management processing, reduce the number of emerged messages due to resource discovery and increase the resource according speed. The proposed method and the Bitmap method are simulated through Arena tool. This proposed model is abbreviated as RNTL.

  13. Conceptual framework for distributed expert-system use in time-sensitive hierarchical control

    Energy Technology Data Exchange (ETDEWEB)

    Henningsen, J.R.

    1987-01-01

    There are many problems faced by decision makers involved in complex, time-sensitive hierarchical control systems. These may include maintaining knowledge of the functional status of the system components, forecasting the impact of past and future events, transferring information to a distant or poorly connected location, changing the requirements for an operation according to resources available, or creating an independent course of action when system connectivity falls. These problems are transdisciplinary in nature, so decision makers in a variety of organizations face them. This research develops a framework for the use of distributed expert systems in support of time-sensitive hierarchical control systems. Attention is focused on determining ways to enhance the likelihood that a system will remain functional during a crisis in which one or more of the system nodes fail. Options in the use of distributed expert systems for this purpose are developed following investigation of related research in the areas of cooperative and distributed systems. A prototype under development of a generic system model called DES (distributed expert systems) is described. DES is a trimular form of support structure, where a trimule is defined to be a combination of a human decision agent, a component system model and an expert system. This concept is an extension of the domular theory of Tenney and Sandell (1981).

  14. Hierarchical Control Strategy for the Cooperative Braking System of Electric Vehicle

    OpenAIRE

    Jiankun Peng; Hongwen He; Wei Liu; Hongqiang Guo

    2015-01-01

    This paper provides a hierarchical control strategy for cooperative braking system of an electric vehicle with separated driven axles. Two layers are defined: the top layer is used to optimize the braking stability based on two sliding mode control strategies, namely, the interaxle control mode and signal-axle control strategies; the interaxle control strategy generates the ideal braking force distribution in general braking condition, and the single-axle control strategy can ensure braking s...

  15. (R)evolution of complex regulatory systems

    DEFF Research Database (Denmark)

    Linding, Rune

    2010-01-01

    Signaling systems are exciting to study precisely because they are some of the most complex and dynamical systems that we know. The cell needs operational freedom and, thus, many motif-domain interactions might not be "hard-wired" through evolution, but instead may be like the Linux operating...

  16. Assessing Short-Term Voltage Stability of Electric Power Systems by a Hierarchical Intelligent System.

    Science.gov (United States)

    Xu, Yan; Zhang, Rui; Zhao, Junhua; Dong, Zhao Yang; Wang, Dianhui; Yang, Hongming; Wong, Kit Po

    2016-08-01

    In the smart grid paradigm, growing integration of large-scale intermittent renewable energies has introduced significant uncertainties to the operations of an electric power system. This makes real-time dynamic security assessment (DSA) a necessity to enable enhanced situational-awareness against the risk of blackouts. Conventional DSA methods are mainly based on the time-domain simulation, which are insufficiently fast and knowledge-poor. In recent years, the intelligent system (IS) strategy has been identified as a promising approach to facilitate real-time DSA. While previous works mainly concentrate on the rotor angle stability, this paper focuses on another yet increasingly important dynamic insecurity phenomenon-the short-term voltage instability, which involves fast and complex load dynamics. The problem is modeled as a classification subproblem for transient voltage collapse and a prediction subproblem for unacceptable dynamic voltage deviation. A hierarchical IS is developed to address the two subproblems sequentially. The IS is based on ensemble learning of random-weights neural networks and is implemented in an offline training, a real-time application, and an online updating pattern. The simulation results on the New England 39-bus system verify its superiority in both learning speed and accuracy over some state-of-the-art learning algorithms.

  17. Regulatory T cells in systemic lupus erythematosus and pregnancy.

    Science.gov (United States)

    Tower, Clare; Mathen, Stephy; Crocker, Ian; Bruce, Ian N

    2013-06-01

    Systemic lupus erythematosus (SLE) is a chronic multisystem autoimmune disorder that predominantly affects women of reproductive age. As clinical outcomes improve, pregnancy in these women is becoming more common. Although epidemiological data have documented an improvement in the prognosis of pregnancy in these women over recent years, they are still at significantly increased risk of pregnancy complications, such as miscarriage, stillbirth, pre-eclampsia and impaired foetal growth. The pathogenesis of SLE involves marked immune dysfunction, and in particular, the function of immunosuppressive elements of the immune system is impaired, including regulatory T-cell function. Because regulatory T cells are likely to be the key cell-modulating feto-maternal tolerance, this review overviews the possibility that regulatory T-cell impairments contribute to pregnancy pathology in women with SLE and contribute to the clinical challenge of managing these women during pregnancy.

  18. Hierarchical Control Strategy for the Cooperative Braking System of Electric Vehicle.

    Science.gov (United States)

    Peng, Jiankun; He, Hongwen; Liu, Wei; Guo, Hongqiang

    2015-01-01

    This paper provides a hierarchical control strategy for cooperative braking system of an electric vehicle with separated driven axles. Two layers are defined: the top layer is used to optimize the braking stability based on two sliding mode control strategies, namely, the interaxle control mode and signal-axle control strategies; the interaxle control strategy generates the ideal braking force distribution in general braking condition, and the single-axle control strategy can ensure braking safety in emergency braking condition; the bottom layer is used to maximize the regenerative braking energy recovery efficiency with a reallocated braking torque strategy; the reallocated braking torque strategy can recovery braking energy as much as possible in the premise of meeting battery charging power. The simulation results show that the proposed hierarchical control strategy is reasonable and can adapt to different typical road surfaces and load cases; the vehicle braking stability and safety can be guaranteed; furthermore, the regenerative braking energy recovery efficiency can be improved.

  19. Scheduling method based on virtual flattened architecture for Hierarchical system-on-chip

    Institute of Scientific and Technical Information of China (English)

    ZHANG Dong; ZHANG Jin-yi; YANG Xiao-dong; YANG Yi

    2009-01-01

    As the technology of IP-core-reused has been widely used, a lot of intellectual property (IP) cores have been embedded in different layers of system-on-chip (SOC). Although the cycles of development and overhead are reduced by this method, it is a challenge to the SOC test. This paper proposes a scheduling method based on the virtual flattened architecture for hierarchical SOC, which breaks the hierarchical architecture to the virtual flattened one. Moreover, this method has more advantages compared with the traditional one, which tests the parent cores and child cores separately. Finally, the method is verified by the ITC'02 benchmark, and gives good results that reduce the test time and overhead effectively.

  20. Hierarchical graphs for better annotations of rule-based models of biochemical systems

    Energy Technology Data Exchange (ETDEWEB)

    Hu, Bin [Los Alamos National Laboratory; Hlavacek, William [Los Alamos National Laboratory

    2009-01-01

    In the graph-based formalism of the BioNetGen language (BNGL), graphs are used to represent molecules, with a colored vertex representing a component of a molecule, a vertex label representing the internal state of a component, and an edge representing a bond between components. Components of a molecule share the same color. Furthermore, graph-rewriting rules are used to represent molecular interactions, with a rule that specifies addition (removal) of an edge representing a class of association (dissociation) reactions and with a rule that specifies a change of vertex label representing a class of reactions that affect the internal state of a molecular component. A set of rules comprises a mathematical/computational model that can be used to determine, through various means, the system-level dynamics of molecular interactions in a biochemical system. Here, for purposes of model annotation, we propose an extension of BNGL that involves the use of hierarchical graphs to represent (1) relationships among components and subcomponents of molecules and (2) relationships among classes of reactions defined by rules. We illustrate how hierarchical graphs can be used to naturally document the structural organization of the functional components and subcomponents of two proteins: the protein tyrosine kinase Lck and the T cell receptor (TCR)/CD3 complex. Likewise, we illustrate how hierarchical graphs can be used to document the similarity of two related rules for kinase-catalyzed phosphorylation of a protein substrate. We also demonstrate how a hierarchical graph representing a protein can be encoded in an XML-based format.

  1. Hierarchical Modeling and Robust Synthesis for the Preliminary Design of Large Scale Complex Systems

    Science.gov (United States)

    Koch, Patrick N.

    1997-01-01

    Large-scale complex systems are characterized by multiple interacting subsystems and the analysis of multiple disciplines. The design and development of such systems inevitably requires the resolution of multiple conflicting objectives. The size of complex systems, however, prohibits the development of comprehensive system models, and thus these systems must be partitioned into their constituent parts. Because simultaneous solution of individual subsystem models is often not manageable iteration is inevitable and often excessive. In this dissertation these issues are addressed through the development of a method for hierarchical robust preliminary design exploration to facilitate concurrent system and subsystem design exploration, for the concurrent generation of robust system and subsystem specifications for the preliminary design of multi-level, multi-objective, large-scale complex systems. This method is developed through the integration and expansion of current design techniques: Hierarchical partitioning and modeling techniques for partitioning large-scale complex systems into more tractable parts, and allowing integration of subproblems for system synthesis; Statistical experimentation and approximation techniques for increasing both the efficiency and the comprehensiveness of preliminary design exploration; and Noise modeling techniques for implementing robust preliminary design when approximate models are employed. Hierarchical partitioning and modeling techniques including intermediate responses, linking variables, and compatibility constraints are incorporated within a hierarchical compromise decision support problem formulation for synthesizing subproblem solutions for a partitioned system. Experimentation and approximation techniques are employed for concurrent investigations and modeling of partitioned subproblems. A modified composite experiment is introduced for fitting better predictive models across the ranges of the factors, and an approach for

  2. A debugging system for azimuthally acoustic logging tools based on modular and hierarchical design ideas

    Science.gov (United States)

    Zhang, K.; Ju, X. D.; Lu, J. Q.; Men, B. Y.

    2016-08-01

    On the basis of modular and hierarchical design ideas, this study presents a debugging system for an azimuthally sensitive acoustic bond tool (AABT). The debugging system includes three parts: a personal computer (PC), embedded front-end machine and function expansion boards. Modular and hierarchical design ideas are conducted in all design and debug processes. The PC communicates with the front-end machine via the Internet, and the front-end machine and function expansion boards connect each other by the extended parallel bus. In this method, the three parts of the debugging system form stable and high-speed data communication. This study not only introduces the system-level debugging and sub-system level debugging of the tool but also the debugging of the analogue signal processing board, which is important and greatly used in logging tools. Experiments illustrate that the debugging system can greatly improve AABT verification and calibration efficiency and that, board-level debugging can examine and improve analogue signal processing boards. The design thinking is clear and the design structure is reasonable, thus making it easy to extend and upgrade the debugging system.

  3. Hierarchical analytical and simulation modelling of human-machine systems with interference

    Science.gov (United States)

    Braginsky, M. Ya; Tarakanov, D. V.; Tsapko, S. G.; Tsapko, I. V.; Baglaeva, E. A.

    2017-01-01

    The article considers the principles of building the analytical and simulation model of the human operator and the industrial control system hardware and software. E-networks as the extension of Petri nets are used as the mathematical apparatus. This approach allows simulating complex parallel distributed processes in human-machine systems. The structural and hierarchical approach is used as the building method for the mathematical model of the human operator. The upper level of the human operator is represented by the logical dynamic model of decision making based on E-networks. The lower level reflects psychophysiological characteristics of the human-operator.

  4. Hierarchical Least Squares Identification and Its Convergence for Large Scale Multivariable Systems

    Institute of Scientific and Technical Information of China (English)

    丁锋; 丁韬

    2002-01-01

    The recursive least squares identification algorithm (RLS) for large scale multivariable systems requires a large amount of calculations, therefore, the RLS algorithm is difficult to implement on a computer. The computational load of estimation algorithms can be reduced using the hierarchical least squares identification algorithm (HLS) for large scale multivariable systems. The convergence analysis using the Martingale Convergence Theorem indicates that the parameter estimation error (PEE) given by the HLS algorithm is uniformly bounded without a persistent excitation signal and that the PEE consistently converges to zero for the persistent excitation condition. The HLS algorithm has a much lower computational load than the RLS algorithm.

  5. Eccentricity generation in hierarchical triple systems with coplanar and initially circular orbits

    CERN Document Server

    Georgakarakos, Nikolaos

    2014-01-01

    We develop a technique for estimating the inner eccentricity in hierarchical triple systems with well separated components. We investigate systems with initially circular and coplanar orbits and comparable masses. The technique is based on an expansion of the rate of change of the Runge-Lenz vector for calculating short period terms by using first order perturbation theory. The combination of the short period terms with terms arising from octupole level secular theory, results in the derivation of a rather simple formula for the eccentricity of the inner binary. The theoretical results are tested against numerical integrations of the full equations of motion. Comparison is also made with other results on the subject.

  6. Eccentricity generation in hierarchical triple systems with non-coplanar and initially circular orbits

    CERN Document Server

    Georgakarakos, Nikolaos

    2014-01-01

    In a previous paper, we developed a technique for estimating the inner eccentricity in coplanar hierarchical triple systems on initially circular orbits, with comparable masses and with well separated components, based on an expansion of the rate of change of the Runge-Lenz vector. Now, the same technique is extended to non-coplanar orbits. However, it can only be applied to systems with ${I_{0}140.77^{\\circ}}$, where ${I}$ is the inclination of the two orbits, because of complications arising from the so-called 'Kozai effect'. The theoretical model is tested against results from numerical integrations of the full equations of motion.

  7. A regulatory program for excretory system regeneration in planarians

    OpenAIRE

    Scimone, M Lucila; Srivastava, Mansi; Bell, George W.; Reddien, Peter W.

    2011-01-01

    Planarians can regenerate any missing body part, requiring mechanisms for the production of organ systems in the adult, including their prominent tubule-based filtration excretory system called protonephridia. Here, we identify a set of genes, Six1/2-2, POU2/3, hunchback, Eya and Sall, that encode transcription regulatory proteins that are required for planarian protonephridia regeneration. During regeneration, planarian stem cells are induced to form a cell population in regeneration blastem...

  8. HIERARCHICAL DESIGN BASED INTRUSION DETECTION SYSTEM FOR WIRELESS AD HOC SENSOR NETWORK

    Directory of Open Access Journals (Sweden)

    Mohammad Saiful Islam Mamun

    2010-07-01

    Full Text Available In recent years, wireless ad hoc sensor network becomes popular both in civil and military jobs.However, security is one of the significant challenges for sensor network because of their deploymentin open and unprotected environment. As cryptographic mechanism is not enough to protect sensornetwork from external attacks, intrusion detection system needs to be introduced. Though intrusionprevention mechanism is one of the major and efficient methods against attacks, but there might besome attacks for which prevention method is not known. Besides preventing the system from someknown attacks, intrusion detection system gather necessary information related to attack technique andhelp in the development of intrusion prevention system. In addition to reviewing the present attacksavailable in wireless sensor network this paper examines the current efforts to intrusion detectionsystem against wireless sensor network. In this paper we propose a hierarchical architectural designbased intrusion detection system that fits the current demands and restrictions of wireless ad hocsensor network. In this proposed intrusion detection system architecture we followed clusteringmechanism to build a four level hierarchical network which enhances network scalability to largegeographical area and use both anomaly and misuse detection techniques for intrusion detection. Weintroduce policy based detection mechanism as well as intrusion response together with GSM cellconcept for intrusion detection architecture.

  9. Risk Assessment for Mobile Systems Through a Multilayered Hierarchical Bayesian Network.

    Science.gov (United States)

    Li, Shancang; Tryfonas, Theo; Russell, Gordon; Andriotis, Panagiotis

    2016-08-01

    Mobile systems are facing a number of application vulnerabilities that can be combined together and utilized to penetrate systems with devastating impact. When assessing the overall security of a mobile system, it is important to assess the security risks posed by each mobile applications (apps), thus gaining a stronger understanding of any vulnerabilities present. This paper aims at developing a three-layer framework that assesses the potential risks which apps introduce within the Android mobile systems. A Bayesian risk graphical model is proposed to evaluate risk propagation in a layered risk architecture. By integrating static analysis, dynamic analysis, and behavior analysis in a hierarchical framework, the risks and their propagation through each layer are well modeled by the Bayesian risk graph, which can quantitatively analyze risks faced to both apps and mobile systems. The proposed hierarchical Bayesian risk graph model offers a novel way to investigate the security risks in mobile environment and enables users and administrators to evaluate the potential risks. This strategy allows to strengthen both app security as well as the security of the entire system.

  10. The stability of tidal equilibrium for hierarchical star-planet-moon systems

    Science.gov (United States)

    Adams, Fred C.; Bloch, Anthony M.

    2016-11-01

    Motivated by the current search for exomoons, this paper considers the stability of tidal equilibrium for hierarchical three-body systems containing a star, a planet, and a moon. In this treatment, the energy and angular momentum budgets include contributions from the planetary orbit, lunar orbit, stellar spin, planetary spin, and lunar spin. The goal is to determine the optimized energy state of the system subject to the constraint of constant angular momentum. Because of the lack of a closed form solution for the full three-body problem, however, we must use an approximate description of the orbits. We first consider the Keplerian limit and find that the critical energy states are saddle points, rather than minima, so that these hierarchical systems have no stable tidal equilibrium states. We then generalize the calculation so that the lunar orbit is described by a time-averaged version of the circular restricted three-body problem. In this latter case, the critical energy state is a shallow minimum, so that a tidal equilibrium state exists. In both cases, however, the lunar orbit for the critical point lies outside the boundary (roughly half the Hill radius) where (previous) numerical simulations indicate dynamical instability. These results suggest that star-planet-moon systems have no viable long-term stable states analogous to those found for two-body systems.

  11. Generalized Hill-Stability Criteria for Hierarchical Three-Body Systems at Arbitrary Inclinations

    CERN Document Server

    Grishin, Evgeni; Zenati, Yossef; Michaely, Erez

    2016-01-01

    A fundamental aspect of the three-body problem is the stability of triple systems. Most stability studies have focused on the co-planar three-body problem, deriving analytic criteria for the dynamical stability of such pro/retrograde systems. Numerical studies of inclined systems phenomenologically mapped their stability regions, but neither explain their physical origin, nor provided satisfactory fit for the dependence of stability on the inclination. Here we present a novel approach to study the stability of hierarchical three-body systems at arbitrary inclinations. This approach accounts not only for the instantaneous stability of such systems, but also for the secular stability and evolution through Lidov-Kozai cycles and evection. Thereby we are able to generalize the Hill-stability criteria to arbitrarily inclined triple systems, and explain the existence of quasi-stable regimes and characterize the inclination dependence of their stability. We complement the analytic treatment with an extensive numeric...

  12. An Integrated Metric Based Hierarchical Routing Algorithm in Broadband Communication System

    Institute of Scientific and Technical Information of China (English)

    SHI Chengge; HU Jiajun; Milton Chang

    2001-01-01

    We give an integrated metric basedhierarchical routing algorithm - FMRSF (FunctionFi(.) minimum routing selected first) algorithm inbroadband communication system in this paper. Withthe authors' analysis strategy, this paper gives a rout-ing solution for hierarchical communication system,and the solution is suited to both ATM network andIP network. Due to the highMevel logic network map-ping in a hierarchical communication system, a largecommunication network can be described as a moresimple logic network on a high level. But, it is dif-ficult to evaluate the QoS parameters of the relativefactors of a logic network (For example: the time de-lay and the bandwidth of logic nodes or logic links).We develop our strategy with FMRSF - algorithm fordifferent routing path, and select the reasonable pathfor one communication session. After designing an in-tegrated metric function describing the QoS metrics ofthe relative factors of a logic network on the high lev-els in a broadband communication system, we provethat the new routing algorithm - FMRSF algorithm ismore simple and applicable, compared with the globaloptimum algorithm.

  13. Human performance in monitoring and controlling hierarchical large-scale systems

    Energy Technology Data Exchange (ETDEWEB)

    Henneman, R.L.; Rouse, W.B.

    1984-03-01

    Human performance in monitoring and controlling activities in a hierarchical large-scale network, such as a communications system, is considered. A scenario is described that is used in an experiment to examine three factors affecting humans functioning as network supervisor: cluster size (number of elements per display page), number of levels of pages in the hierarchy, and failure rate per element. It is indicated by the results that increasing cluster size improves performance, increasing number of levels degrades performance, and failure rate affects only subjects strategies.

  14. Hierarchical parameter estimation of DFIG and drive train system in a wind turbine generator

    Science.gov (United States)

    Pan, Xueping; Ju, Ping; Wu, Feng; Jin, Yuqing

    2017-09-01

    A new hierarchical parameter estimation method for doubly fed induction generator (DFIG) and drive train system in a wind turbine generator (WTG) is proposed in this paper. Firstly, the parameters of the DFIG and the drive train are estimated locally under different types of disturbances. Secondly, a coordination estimation method is further applied to identify the parameters of the DFIG and the drive train simultaneously with the purpose of attaining the global optimal estimation results. The main benefit of the proposed scheme is the improved estimation accuracy. Estimation results confirm the applicability of the proposed estimation technique.

  15. HIERARCHICAL METHODOLOGY FOR MODELING HYDROGEN STORAGE SYSTEMS PART II: DETAILED MODELS

    Energy Technology Data Exchange (ETDEWEB)

    Hardy, B; Donald L. Anton, D

    2008-12-22

    There is significant interest in hydrogen storage systems that employ a media which either adsorbs, absorbs or reacts with hydrogen in a nearly reversible manner. In any media based storage system the rate of hydrogen uptake and the system capacity is governed by a number of complex, coupled physical processes. To design and evaluate such storage systems, a comprehensive methodology was developed, consisting of a hierarchical sequence of models that range from scoping calculations to numerical models that couple reaction kinetics with heat and mass transfer for both the hydrogen charging and discharging phases. The scoping models were presented in Part I [1] of this two part series of papers. This paper describes a detailed numerical model that integrates the phenomena occurring when hydrogen is charged and discharged. A specific application of the methodology is made to a system using NaAlH{sub 4} as the storage media.

  16. The Stability of Tidal Equilibrium for Hierarchical Star-Planet-Moon Systems

    CERN Document Server

    Adams, Fred C

    2016-01-01

    Motivated by the current search for exomoons, this paper considers the stability of tidal equilibrium for hierarchical three-body systems containing a star, a planet, and a moon. In this treatment, the energy and angular momentum budgets include contributions from the planetary orbit, lunar orbit, stellar spin, planetary spin, and lunar spin. The goal is to determine the optimized energy state of the system subject to the constraint of constant angular momentum. Due to the lack of a closed form solution for the full three-body problem, however, we must use use an approximate description of the orbits. We first consider the Keplerian limit and find that the critical energy states are saddle points, rather than minima, so that these hierarchical systems have no stable tidal equilibrium states. We then generalize the calculation so that the lunar orbit is described by a time-averaged version of the circular restricted three-body problem. In this latter case, the critical energy state is a shallow minimum, so tha...

  17. The impact of hierarchical memory systems on linear algebra algorithm design

    Energy Technology Data Exchange (ETDEWEB)

    Gallivan, K.; Jalby, W.; Meier, U.; Sameh, A.

    1987-09-14

    Performing an extremely detailed performance optimization analysis is counterproductive when the concern is performance behavior on a class of architecture, since general trends are obscured by the overwhelming number of machine-specific considerations required. Instead, in this paper, a methodology is used which identifies the effects of a hierarchical memory system on the performance of linear algebra algorithms on multivector processors; provides a means of producing a set of algorithm parameters, i.e., blocksizes, as functions of system parameters which yield near-optimal performance; and provides guidelines for algorithm designers which reduce the influence of the hierarchical memory system on algorithm performance to negligible levels and thereby allow them to concentrate on machine-specific optimizations. The remainder of this paper comprises five major discussions. First, the methodology and the attendant architectural model are discussed. Next, an analysis of the basic BLAS3 matrix-matrix primitive is presented. This is followed by a discussion of three block algorithms: a block LU decomposition, a block LDL/sup T/ decomposition and a block Gram-Schmidt algorithm. 22 refs., 9 figs.

  18. Chirality as an Instrument of Stratification of Hierarchical Systems in Animate and Inanimate Nature

    CERN Document Server

    Tverdislov, Vsevolod A

    2012-01-01

    The article seeks to formulate a synergetic law that is posited to be of common physicochemical and biological nature: an evolving system, possessing free energy and elements with chiral asymmetry may change the type of symmetry inside one hierarchical level, thereby increasing its "complexity", but preserving the sign of predominant chirality ("right"-D or "left"-L twist). The same system has a tendency to spontaneous formation of a succession of hierarchical levels with alternating chirality sign of de-novo formed structures and with an increase of the structures' relative scale. In the living systems the hierarchy principle of conjugated levels of macromolecular structures, starting with the "lower" level of asymmetrical carbon, serves as an anti-entropic factor and also as the structural basis of the "selected mechanical degrees of freedom" in the molecular machines. Observations present evidence of regular alternations of the chirality sign D-L-D-L and L-D-L-D for DNA and protein structures, respectively...

  19. Sociotechnical systems as a framework for regulatory system design and evaluation: Using Work Domain Analysis to examine a new regulatory system.

    Science.gov (United States)

    Carden, Tony; Goode, Natassia; Read, Gemma J M; Salmon, Paul M

    2017-03-15

    Like most work systems, the domain of adventure activities has seen a series of serious incidents and subsequent calls to improve regulation. Safety regulation systems aim to promote safety and reduce accidents. However, there is scant evidence they have led to improved safety outcomes. In fact there is some evidence that the poor integration of regulatory system components has led to adverse safety outcomes in some contexts. Despite this, there is an absence of methods for evaluating regulatory and compliance systems. This article argues that sociotechnical systems theory and methods provide a suitable framework for evaluating regulatory systems. This is demonstrated through an analysis of a recently introduced set of adventure activity regulations. Work Domain Analysis (WDA) was used to describe the regulatory system in terms of its functional purposes, values and priority measures, purpose-related functions, object-related processes and cognitive objects. This allowed judgement to be made on the nature of the new regulatory system and on the constraints that may impact its efficacy following implementation. Importantly, the analysis suggests that the new system's functional purpose of ensuring safe activities is not fully supported in terms of the functions and objects available to fulfil them. Potential improvements to the design of the system are discussed along with the implications for regulatory system design and evaluation across the safety critical domains generally. Copyright © 2017 Elsevier Ltd. All rights reserved.

  20. Computational Genetic Regulatory Networks Evolvable, Self-organizing Systems

    CERN Document Server

    Knabe, Johannes F

    2013-01-01

    Genetic Regulatory Networks (GRNs) in biological organisms are primary engines for cells to enact their engagements with environments, via incessant, continually active coupling. In differentiated multicellular organisms, tremendous complexity has arisen in the course of evolution of life on earth. Engineering and science have so far achieved no working system that can compare with this complexity, depth and scope of organization. Abstracting the dynamics of genetic regulatory control to a computational framework in which artificial GRNs in artificial simulated cells differentiate while connected in a changing topology, it is possible to apply Darwinian evolution in silico to study the capacity of such developmental/differentiated GRNs to evolve. In this volume an evolutionary GRN paradigm is investigated for its evolvability and robustness in models of biological clocks, in simple differentiated multicellularity, and in evolving artificial developing 'organisms' which grow and express an ontogeny starting fr...

  1. Design of Energy-efficient Hierarchical Scheduling for Integrated Modular Avionics Systems

    Institute of Scientific and Technical Information of China (English)

    ZHOU Tianran; XIONG Huagang

    2012-01-01

    Recently the integrated modular avionics (IMA) architecture which introduces the concept of resource partitions becomes popular as an alternative to the traditional federated architecture.This study investigates the problem of designing hierarchical scheduling for IMA systems.The proposed scheduler model enables strong temporal partitioning,so that multiple hard real-time applications can be easily integrated into an uniprocessor platform.This paper derives the mathematic relationships among partition cycle,partition capacity and schedulability under the real-time condition,and then proposes an algorithm for optimizing partition parameters.Real-time tasks with arbitrary deadlines are considered for generality.To further improve the basic algorithm and reduce the energy consumption for embedded systems in aircraft,a power optimization approach is also proposed by exploiting the slack time.Experimental results show that the designed system can guarantee the hard real-time requirement and reduce the power consumption by at least 14%.

  2. Generic-type hierarchical multi digital signal processor system for hard-field tomography.

    Science.gov (United States)

    Garcia Castillo, Sergio; Ozanyan, Krikor B

    2007-05-01

    This article introduces the design and implementation of a hierarchical multi digital signal processor system aimed to perform parallel multichannel measurements and data processing of the type widely used in hard-field tomography. Details are presented of a complete tomography system with modular and expandable architecture, capable of accommodating a variety of data processing modalities, configured by software. The configuration of the acquisition and processing circuits and the management of the data flow allow a data frame rate of up to 250 kHz. Results of a case study, guided path tomography for temperature mapping, are shown as a direct demonstration of the system's capabilities. Digital lock-in detection is employed for data processing to extract the information from ac measurements of the temperature-induced resistance changes in an array of 32 noninteracting transducers, which is further exported for visualization.

  3. Generic-type hierarchical multi digital signal processor system for hard-field tomography

    Science.gov (United States)

    Garcia Castillo, Sergio; Ozanyan, Krikor B.

    2007-05-01

    This article introduces the design and implementation of a hierarchical multi digital signal processor system aimed to perform parallel multichannel measurements and data processing of the type widely used in hard-field tomography. Details are presented of a complete tomography system with modular and expandable architecture, capable of accommodating a variety of data processing modalities, configured by software. The configuration of the acquisition and processing circuits and the management of the data flow allow a data frame rate of up to 250kHz. Results of a case study, guided path tomography for temperature mapping, are shown as a direct demonstration of the system's capabilities. Digital lock-in detection is employed for data processing to extract the information from ac measurements of the temperature-induced resistance changes in an array of 32 noninteracting transducers, which is further exported for visualization.

  4. Food safety regulatory systems in Europe and China:A study of how co-regulation can improve regulatory effectiveness

    Institute of Scientific and Technical Information of China (English)

    Kevin Chen; WANG Xin-xin; SONG Hai-ying

    2015-01-01

    Food safety has received a great deal of attention in both developed and developing countries in recent years. In China, the numerous food scandals and scares that have struck over the past decade have spurred signiifcant food safety regulatory reform, which has been increasingly oriented towards the public-private partnership model adopted by the Europe Union’s (EU) food safety regulatory system. This paper analyzes the development of both the EU’s and China’s food safety regu-latory systems, identiifes the current chalenges for China and additionaly considers the role of public-private partnership. The success of co-regulation in the food regulatory system would bring signiifcant beneifts and opportunities for China. Finaly, this paper recommends additional measures like training and grants to improve the private’s sector effectiveness in co-regulating China’s food safety issues.

  5. Selected legal and regulatory concerns affecting domestic energy transportation systems

    Energy Technology Data Exchange (ETDEWEB)

    Schuller, C.R.

    1979-07-01

    This report provides assessments of eight legal and regulatory concerns that may affect energy material transportation in the US during the rest of the century: state authority to regulate nuclear materials transport, divestiture of petroleum pipelines from major integrated oil companies, problems affecting the natural gas transportation system, capabilities of energy transportation systems during emergencies, Federal coal pipeline legislation, ability of Federal agencies to anticipate railroad difficulties, abandonment of uneconomic railroad lines, and impact of the Panama Canal treaty upon US energy transportation. (DLC)

  6. Optimizing Blocking and Nonblocking Reduction Operations for Multicore Systems: Hierarchical Design and Implementation

    Energy Technology Data Exchange (ETDEWEB)

    Gorentla Venkata, Manjunath [ORNL; Shamis, Pavel [ORNL; Graham, Richard L [ORNL; Ladd, Joshua S [ORNL; Sampath, Rahul S [ORNL

    2013-01-01

    Many scientific simulations, using the Message Passing Interface (MPI) programming model, are sensitive to the performance and scalability of reduction collective operations such as MPI Allreduce and MPI Reduce. These operations are the most widely used abstractions to perform mathematical operations over all processes that are part of the simulation. In this work, we propose a hierarchical design to implement the reduction operations on multicore systems. This design aims to improve the efficiency of reductions by 1) tailoring the algorithms and customizing the implementations for various communication mechanisms in the system 2) providing the ability to configure the depth of hierarchy to match the system architecture, and 3) providing the ability to independently progress each of this hierarchy. Using this design, we implement MPI Allreduce and MPI Reduce operations (and its nonblocking variants MPI Iallreduce and MPI Ireduce) for all message sizes, and evaluate on multiple architectures including InfiniBand and Cray XT5. We leverage and enhance our existing infrastructure, Cheetah, which is a framework for implementing hierarchical collective operations to implement these reductions. The experimental results show that the Cheetah reduction operations outperform the production-grade MPI implementations such as Open MPI default, Cray MPI, and MVAPICH2, demonstrating its efficiency, flexibility and portability. On Infini- Band systems, with a microbenchmark, a 512-process Cheetah nonblocking Allreduce and Reduce achieves a speedup of 23x and 10x, respectively, compared to the default Open MPI reductions. The blocking variants of the reduction operations also show similar performance benefits. A 512-process nonblocking Cheetah Allreduce achieves a speedup of 3x, compared to the default MVAPICH2 Allreduce implementation. On a Cray XT5 system, a 6144-process Cheetah Allreduce outperforms the Cray MPI by 145%. The evaluation with an application kernel, Conjugate

  7. Self-assembly of hierarchically ordered structures in DNA nanotube systems

    Science.gov (United States)

    Glaser, Martin; Schnauß, Jörg; Tschirner, Teresa; Schmidt, B. U. Sebastian; Moebius-Winkler, Maximilian; Käs, Josef A.; Smith, David M.

    2016-05-01

    The self-assembly of molecular and macromolecular building blocks into organized patterns is a complex process found in diverse systems over a wide range of size and time scales. The formation of star- or aster-like configurations, for example, is a common characteristic in solutions of polymers or other molecules containing multi-scaled, hierarchical assembly processes. This is a recurring phenomenon in numerous pattern-forming systems ranging from cellular constructs to solutions of ferromagnetic colloids or synthetic plastics. To date, however, it has not been possible to systematically parameterize structural properties of the constituent components in order to study their influence on assembled states. Here, we circumvent this limitation by using DNA nanotubes with programmable mechanical properties as our basic building blocks. A small set of DNA oligonucleotides can be chosen to hybridize into micron-length DNA nanotubes with a well-defined circumference and stiffness. The self-assembly of these nanotubes to hierarchically ordered structures is driven by depletion forces caused by the presence of polyethylene glycol. This trait allowed us to investigate self-assembly effects while maintaining a complete decoupling of density, self-association or bundling strength, and stiffness of the nanotubes. Our findings show diverse ranges of emerging structures including heterogeneous networks, aster-like structures, and densely bundled needle-like structures, which compare to configurations found in many other systems. These show a strong dependence not only on concentration and bundling strength, but also on the underlying mechanical properties of the nanotubes. Similar network architectures to those caused by depletion forces in the low-density regime are obtained when an alternative hybridization-based bundling mechanism is employed to induce self-assembly in an isotropic network of pre-formed DNA nanotubes. This emphasizes the universal effect inevitable

  8. Hierarchical neural network model of the visual system determining figure/ground relation

    Science.gov (United States)

    Kikuchi, Masayuki

    2017-07-01

    One of the most important functions of the visual perception in the brain is figure/ground interpretation from input images. Figural region in 2D image corresponding to object in 3D space are distinguished from background region extended behind the object. Previously the author proposed a neural network model of figure/ground separation constructed on the standpoint that local geometric features such as curvatures and outer angles at corners are extracted and propagated along input contour in a single layer network (Kikuchi & Akashi, 2001). However, such a processing principle has the defect that signal propagation requires manyiterations despite the fact that actual visual system determines figure/ground relation within the short period (Zhou et al., 2000). In order to attain speed-up for determining figure/ground, this study incorporates hierarchical architecture into the previous model. This study confirmed the effect of the hierarchization as for the computation time by simulation. As the number of layers increased, the required computation time reduced. However, such speed-up effect was saturatedas the layers increased to some extent. This study attempted to explain this saturation effect by the notion of average distance between vertices in the area of complex network, and succeeded to mimic the saturation effect by computer simulation.

  9. Hierarchical multilevel authentication system for multiple-image based on phase retrieval and basic vector operations

    Science.gov (United States)

    Li, Xianye; Meng, Xiangfeng; Yin, Yongkai; Yang, Xiulun; Wang, Yurong; Peng, Xiang; He, Wenqi; Pan, Xuemei; Dong, Guoyan; Chen, Hongyi

    2017-02-01

    A hierarchical multilevel authentication system for multiple-image based on phase retrieval and basic vector operations in the Fresnel domain is proposed, by which more certification images are iteratively encoded into multiple cascaded phase masks according to different hierarchical levels. Based on the secret sharing algorithm by basic vector decomposition and composition operations, the iterated phase distributions are split into n pairs of shadow images keys (SIKs), and then distributed to n different participants (the authenticators). During each level in the high authentication process, any 2 or more participants can be gathered to reconstruct the original meaningful certification images. While in the case of each level in the low authentication process, only one authenticator who possesses a correct pair of SIKs, will gain no significant information of certification image; however, it can result in a remarkable peak output in the nonlinear correlation coefficient of the recovered image and the standard certification image, which can successfully provide an additional authentication layer for the high-level authentication. Theoretical analysis and numerical simulations both verify the feasibility of the proposed method.

  10. Hierarchical Control Strategy for the Cooperative Braking System of Electric Vehicle

    Science.gov (United States)

    Peng, Jiankun; He, Hongwen; Guo, Hongqiang

    2015-01-01

    This paper provides a hierarchical control strategy for cooperative braking system of an electric vehicle with separated driven axles. Two layers are defined: the top layer is used to optimize the braking stability based on two sliding mode control strategies, namely, the interaxle control mode and signal-axle control strategies; the interaxle control strategy generates the ideal braking force distribution in general braking condition, and the single-axle control strategy can ensure braking safety in emergency braking condition; the bottom layer is used to maximize the regenerative braking energy recovery efficiency with a reallocated braking torque strategy; the reallocated braking torque strategy can recovery braking energy as much as possible in the premise of meeting battery charging power. The simulation results show that the proposed hierarchical control strategy is reasonable and can adapt to different typical road surfaces and load cases; the vehicle braking stability and safety can be guaranteed; furthermore, the regenerative braking energy recovery efficiency can be improved. PMID:26236772

  11. Hierarchical Control Strategy for the Cooperative Braking System of Electric Vehicle

    Directory of Open Access Journals (Sweden)

    Jiankun Peng

    2015-01-01

    Full Text Available This paper provides a hierarchical control strategy for cooperative braking system of an electric vehicle with separated driven axles. Two layers are defined: the top layer is used to optimize the braking stability based on two sliding mode control strategies, namely, the interaxle control mode and signal-axle control strategies; the interaxle control strategy generates the ideal braking force distribution in general braking condition, and the single-axle control strategy can ensure braking safety in emergency braking condition; the bottom layer is used to maximize the regenerative braking energy recovery efficiency with a reallocated braking torque strategy; the reallocated braking torque strategy can recovery braking energy as much as possible in the premise of meeting battery charging power. The simulation results show that the proposed hierarchical control strategy is reasonable and can adapt to different typical road surfaces and load cases; the vehicle braking stability and safety can be guaranteed; furthermore, the regenerative braking energy recovery efficiency can be improved.

  12. Resilient control of cyber-physical systems against intelligent attacker: a hierarchal stackelberg game approach

    Science.gov (United States)

    Yuan, Yuan; Sun, Fuchun; Liu, Huaping

    2016-07-01

    This paper is concerned with the resilient control under denial-of-service attack launched by the intelligent attacker. The resilient control system is modelled as a multi-stage hierarchical game with a corresponding hierarchy of decisions made at cyber and physical layer, respectively. Specifically, the interaction in the cyber layer between different security agents is modelled as a static infinite Stackelberg game, while in the underlying physical layer the full-information H∞ minimax control with package drops is modelled as a different Stackelberg game. Both games are solved sequentially, which is consistent with the actual situations. Finally, the proposed method is applied to the load frequency control of the power system, which demonstrates its effectiveness.

  13. Controlling Hierarchically Self-Assembly in Supramolecular Tailed-Dendron Systems

    Science.gov (United States)

    Merlet-Lacroix, Nathalie; Rao, Jingui; Zhang, Afang; Schlüter, Dieter; Ruokolainen, Janne; Mezzenga, Raffaele

    2010-03-01

    We study the self-assembly of a dendritic macromolecular system formed by a second-generation dendron and a polymer chain emanating from its focal point. We use supramolecular ionic interactions to attach to the periphery of the dendrons sulphated alkyl tails. The resulting ``triblock copolymers'' have a molecular architecture similar to a four-arm pitchfork with varying arms and holder lengths. The bulk morphologies observed by SAXS and TEM show thermodynamically stable, hierarchical ``inverted'' hexagonal or lamellar structures. The structural models for the molecular packing emerging from experimental findings are benchmarked to available self-consistent field theories (SCFT) and experiments and theoretical predictions are found in perfect agreement. The present results show that supramolecular systems based on tailed dendrons and surfactants can be used to scale up of the structural organization from the liquid crystalline length scale to the block copolymer length scale, while preserving the inverted unconventional morphologies offering new possibilities in the design of nanostructured materials.

  14. A Framework for a Decision Support System in a Hierarchical Extended Enterprise Decision Context

    Science.gov (United States)

    Boza, Andrés; Ortiz, Angel; Vicens, Eduardo; Poler, Raul

    Decision Support System (DSS) tools provide useful information to decision makers. In an Extended Enterprise, a new goal, changes in the current objectives or small changes in the extended enterprise configuration produce a necessary adjustment in its decision system. A DSS in this context must be flexible and agile to make suitable an easy and quickly adaptation to this new context. This paper proposes to extend the Hierarchical Production Planning (HPP) structure to an Extended Enterprise decision making context. In this way, a framework for DSS in Extended Enterprise context is defined using components of HPP. Interoperability details have been reviewed to identify the impact in this framework. The proposed framework allows overcoming some interoperability barriers, identifying and organizing components for a DSS in Extended Enterprise context, and working in the definition of an architecture to be used in the design process of a flexible DSS in Extended Enterprise context which can reuse components for futures Extended Enterprise configurations.

  15. Energy Management Systems and tertiary regulation in hierarchical control architectures for islanded micro-grids

    DEFF Research Database (Denmark)

    Sanseverino, Eleonora Riva; Di Silvestre, Maria Luisa; Quang, Ninh Nguyen;

    2015-01-01

    In this paper, the structure of the highest level of a hierarchical control architecture for micro-grids is proposed. Such structure includes two sub-levels: the Energy Management System, EMS, and the tertiary regulation. The first devoted to energy resources allocation in each time slot based...... on marginal production costs, the latter aiming at finding the match between production and consumption satisfying the constraints set by the EMS level about the energy production in each time slot. Neglecting the efficiency of the different energy generation systems as well as that of the infrastructure...... for electrical energy distribution, the problem dealt with by the EMS sub-level is linear and can be solved by well known Linear Programming optimization procedures. The tertiary sub-level, below the EMS, optimizes mainly technical objectives and requires the solution of the Optimal Power Flow problem. After...

  16. Distributed Hierarchical Control Architecture for Transient Dynamics Improvement in Power Systems

    Energy Technology Data Exchange (ETDEWEB)

    Marinovici, Laurentiu D.; Lian, Jianming; Kalsi, Karanjit; Du, Pengwei; Elizondo, Marcelo A.

    2013-08-24

    In this paper, a novel distributed hierarchical coordinated control architecture is proposed for large scale power systems. The newly considered architecture facilitates frequency restoration and power balancing functions to be decoupled and implemented at different levels. At the local level, decentralized robust generator controllers are designed to quickly restore frequency after large faults and disturbances in the system. The controllers presented herein are shown to improve transient stability performance, as compared to conventional governor and excitation control. At the area level, Automatic Generation Control (AGC) is modified and coordinates with the decentralized robust controllers to reach the interchange schedule in the tie lines. The interaction of local and zonal controllers is validated through detailed simulations.

  17. From heterochromatin islands to the NAD World: a hierarchical view of aging through the functions of mammalian Sirt1 and systemic NAD biosynthesis.

    Science.gov (United States)

    Imai, Shin-ichiro

    2009-10-01

    For the past couple of decades, aging science has been rapidly evolving, and powerful genetic tools have identified a variety of evolutionarily conserved regulators and signaling pathways for the control of aging and longevity in model organisms. Nonetheless, a big challenge still remains to construct a comprehensive concept that could integrate many distinct layers of biological events into a systemic, hierarchical view of aging. The "heterochromatin island" hypothesis was originally proposed 10 years ago to explain deterministic and stochastic aspects of cellular and organismal aging, which drove the author to the study of evolutionarily conserved Sir2 proteins. Since a surprising discovery of their NAD-dependent deacetylase activity, Sir2 proteins, now called "sirtuins," have been emerging as a critical epigenetic regulator for aging. In this review, I will follow the process of conceptual development from the heterochromatin island hypothesis to a novel, comprehensive concept of a systemic regulatory network for mammalian aging, named "NAD World," summarizing recent studies on the mammalian NAD-dependent deacetylase Sirt1 and nicotinamide phosphoribosyltransferase (Nampt)-mediated systemic NAD biosynthesis. This new concept of the NAD World provides critical insights into a systemic regulatory mechanism that fundamentally connects metabolism and aging and also conveys the ideas of functional hierarchy and frailty for the regulation of aging in mammals.

  18. Hierarchical flight control system synthesis for rotorcraft-based unmanned aerial vehicles

    Science.gov (United States)

    Shim, Hyunchul

    The Berkeley Unmanned Aerial Vehicle (UAV) research aims to design, implement, and analyze a group of autonomous intelligent UAVs and UGVs (Unmanned Ground Vehicles). The goal of this dissertation is to provide a comprehensive procedural methodology to design, implement, and test rotorcraft-based unmanned aerial vehicles (RUAVs). We choose the rotorcraft as the base platform for our aerial agents because it offers ideal maneuverability for our target scenarios such as the pursuit-evasion game. Aided by many enabling technologies such as lightweight and powerful computers, high-accuracy navigation sensors and communication devices, it is now possible to construct RUAVs capable of precise navigation and intelligent behavior by the decentralized onboard control system. Building a fully functioning RUAV requires a deep understanding of aeronautics, control theory and computer science as well as a tremendous effort for implementation. These two aspects are often inseparable and therefore equally highlighted throughout this research. The problem of multiple vehicle coordination is approached through the notion of a hierarchical system. The idea behind the proposed architecture is to build a hierarchical multiple-layer system that gradually decomposes the abstract mission objectives into the physical quantities of control input. Each RUAV incorporated into this system performs the given tasks and reports the results through the hierarchical communication channel back to the higher-level coordinator. In our research, we provide a theoretical and practical approach to build a number of RUAVs based on commercially available navigation sensors, computer systems, and radio-controlled helicopters. For the controller design, the dynamic model of the helicopter is first built. The helicopter exhibits a very complicated multi-input multi-output, nonlinear, time-varying and coupled dynamics, which is exposed to severe exogenous disturbances. This poses considerable difficulties for

  19. Structural system identification using degree of freedom-based reduction and hierarchical clustering algorithm

    Science.gov (United States)

    Chang, Seongmin; Baek, Sungmin; Kim, Ki-Ook; Cho, Maenghyo

    2015-06-01

    A system identification method has been proposed to validate finite element models of complex structures using measured modal data. Finite element method is used for the system identification as well as the structural analysis. In perturbation methods, the perturbed system is expressed as a combination of the baseline structure and the related perturbations. The changes in dynamic responses are applied to determine the structural modifications so that the equilibrium may be satisfied in the perturbed system. In practical applications, the dynamic measurements are carried out on a limited number of accessible nodes and associated degrees of freedom. The equilibrium equation is, in principle, expressed in terms of the measured (master, primary) and unmeasured (slave, secondary) degrees of freedom. Only the specified degrees of freedom are included in the equation formulation for identification and the unspecified degrees of freedom are eliminated through the iterative improved reduction scheme. A large number of system parameters are included as the unknown variables in the system identification of large-scaled structures. The identification problem with large number of system parameters requires a large amount of computation time and resources. In the present study, a hierarchical clustering algorithm is applied to reduce the number of system parameters effectively. Numerical examples demonstrate that the proposed method greatly improves the accuracy and efficiency in the inverse problem of identification.

  20. Nearly Cyclic Pursuit and its Hierarchical variant for Multi-agent Systems

    DEFF Research Database (Denmark)

    Iqbal, Muhammad; Leth, John-Josef; Ngo, Trung Dung

    2015-01-01

    The rendezvous problem for multiple agents under nearly cyclic pursuit and hierarchical nearly cyclic pursuit is discussed in this paper. The control law designed under nearly cyclic pursuit strategy enables the agents to converge at a point dictated by a beacon. A hierarchical version of the nea......The rendezvous problem for multiple agents under nearly cyclic pursuit and hierarchical nearly cyclic pursuit is discussed in this paper. The control law designed under nearly cyclic pursuit strategy enables the agents to converge at a point dictated by a beacon. A hierarchical version...

  1. H-RBAC: A Hierarchical Access Control Model for SaaS Systems

    Directory of Open Access Journals (Sweden)

    Dancheng Li

    2011-08-01

    Full Text Available SaaS is a new way to deploy software as a hosted service and accessed over the Internet which means the customers don’t need to maintain the software code and data on their own servers. So it’s more important for SaaS systems to take security issues into account. Access control is a security mechanism that enables an authority to access to certain restricted areas and resources according to the permissions assigned to a user. Several access models have been proposed to realize the access control of single instance systems. However, most of the existing models couldn’t address the following SaaS system problems: (1 role name conflicts (2 cross-level management (3 the isomerism of tenants' access control (4 temporal delegation constraints. This paper describes a hierarchical RBAC model called H-RBAC solves all the four problems of SaaS systems mentioned above. This model addresses the SaaS system access control in both system level and tenant level. It combines the advantages of RBDM and ARBAC97 model and introduces temporal constraints to SaaS access control model. In addition, a practical approach to implement the access control module for SaaS systems based on H-RBAC model is also proposed in this paper.

  2. Critical slowing down of the Gaussian spin system on diamond—type hierarchical lattices

    Institute of Scientific and Technical Information of China (English)

    朱建阳; 朱涵

    2003-01-01

    Based on the single-spin transition critical dynamics,we have investigated the critical slowing down of the Gaussian spin model situated on the fractal family of diamond-type hierarchical lattices.We calculate the dynamical critical exponent z and the correlation-length critical exponent v using the dynamical decimation renormalization-group technique.The result,together with some earlier ones,suggests us to conclude that on a wide range of geometries,zv=1 is the general relationship,while the two exponents depend on the specific structure,However,we have investigated for various lattices in an earlier paper,the system studied in this paper shows highly universal z=1/v=2 independent of the structure and the dimensionality.

  3. Critical slowing down of the Gaussian spin system on diamond-type hierarchical lattices

    Institute of Scientific and Technical Information of China (English)

    朱建阳; 朱涵

    2003-01-01

    Based on the single-spin transition critical dynamics, we have investigated the critical slowing down of the Gaussian spin model situated on the fractal family of diamond-type hierarchical lattices. We calculate the dynamical critical exponent z and the correlation-length critical exponent v using the dynamical decimation renormalization-group technique. The result, together with some earlier ones, suggests us to conclude that on a wide range of geometries, zv = 1is the general relationship, while the two exponents depend on the specific structure. However, we have investigated for various lattices in an earlier paper, the system studied in this paper shows highly universal z = 1/v = 2 independent of the structure and the dimensionality.

  4. Biological Chitin-MOF Composites with Hierarchical Pore Systems for Air-Filtration Applications.

    Science.gov (United States)

    Wisser, Dorothea; Wisser, Florian M; Raschke, Silvia; Klein, Nicole; Leistner, Matthias; Grothe, Julia; Brunner, Eike; Kaskel, Stefan

    2015-10-19

    Metal-organic frameworks (MOFs) are promising materials for gas-separation and air-filtration applications. However, for these applications, MOF crystallites need to be incorporated in robust and manageable support materials. We used chitin-based networks from a marine sponge as a non-toxic, biodegradable, and low-weight support material for MOF deposition. The structural properties of the material favor predominant nucleation of the MOF crystallites at the inside of the hollow fibers. This composite has a hierarchical pore system with surface areas up to 800 m(2)  g(-1) and pore volumes of 3.6 cm(3)  g(-1) , allowing good transport kinetics and a very high loading of the active material. Ammonia break-through experiments highlight the accessibility of the MOF crystallites and the adsorption potential of the composite indicating their high potential for filtration applications for toxic industrial gases.

  5. Globally COnstrained Local Function Approximation via Hierarchical Modelling, a Framework for System Modelling under Partial Information

    DEFF Research Database (Denmark)

    Øjelund, Henrik; Sadegh, Payman

    2000-01-01

    , constraints are introduced to ensure the conformity of the estimates to a gien global structure. Hierarchical models are then utilized as a tool to ccomodate global model uncertainties via parametric variabilities within the structure. The global parameters and their associated uncertainties are estimated...... simultaneously with the (local estimates of) function values. The approach is applied to modelling of a linear time variant dynamic system under prior linear time invariant structure where local regression fails as a result of high dimensionality.......Local function approximations concern fitting low order models to weighted data in neighbourhoods of the points where the approximations are desired. Despite their generality and convenience of use, local models typically suffer, among others, from difficulties arising in physical interpretation...

  6. Using Hierarchical Adaptive Neuro Fuzzy Systems And Design Two New Edge Detectors In Noisy Images

    Directory of Open Access Journals (Sweden)

    M. H. Olyaee

    2013-10-01

    Full Text Available One of the most important topics in image processing is edge detection. Many methods have been proposed for this end but most of them have weak performance in noisy images because noise pixels are determined as edge. In this paper, two new methods are represented based on Hierarchical Adaptive Neuro Fuzzy Systems (HANFIS. Each method consists of desired number of HANFIS operators that receive the value of some neighbouring pixels and decide central pixel is edge or not. Simple train images are used in order to set internal parameters of each HANFIS operator. The presented methods are evaluated by some test images and compared with several popular edge detectors. The experimental results show that these methods are robust against impulse noise and extract edge pixels exactly.

  7. A special hierarchical fuzzy neural-networks based reinforcement learning for multi-variables system

    Institute of Scientific and Technical Information of China (English)

    ZHANG Wen-zhi; LU Tian-sheng

    2005-01-01

    Proposes a reinforcement learning scheme based on a special Hierarchical Fuzzy Neural-Networks (HFNN) for solving complicated learning tasks in a continuous multi-variables environment. The output of the previous layer in the HFNN is no longer used as if-part of the next layer, but used only in then-part. Thus it can deal with the difficulty when the output of the previous layer is meaningless or its meaning is uncertain. The proposed HFNN has a minimal number of fuzzy rules and can successfully solve the problem of rules combination explosion and decrease the quantity of computation and memory requirement. In the learning process, two HFNN with the same structure perform fuzzy action composition and evaluation function approximation simultaneously where the parameters of neural-networks are tuned and updated on line by using gradient descent algorithm. The reinforcement learning method is proved to be correct and feasible by simulation of a double inverted pendulum system.

  8. Stackelberg Interdependent Security Game in Distributed and Hierarchical Cyber-Physical Systems

    Directory of Open Access Journals (Sweden)

    Jiajun Shen

    2017-01-01

    Full Text Available With the integration of physical plant and network, cyber-physical systems (CPSs are increasingly vulnerable due to their distributed and hierarchical framework. Stackelberg interdependent security game (SISG is proposed for characterizing the interdependent security in CPSs, that is, the interactions between individual CPSs, which are selfish but nonmalicious with the payoff function being formulated from a cross-layer perspective. The pure-strategy equilibria for two-player symmetric SISG are firstly analyzed with the strategy gap between individual and social optimum being characterized, which is known as negative externalities. Then, the results are further extended to the asymmetric and m-player SISG. At last, a numerical case of practical experiment platform is analyzed for determining the comprehensively optimal security configuration for administrator.

  9. Regulatory overview of digital I and C system in Taiwan Lungmen Project

    Energy Technology Data Exchange (ETDEWEB)

    Chuang, C.F. [Department of Engineering and System Science, National Tsing Hua University, Taipei, Taiwan (China); Nuclear Regulatory Division, Atomic Energy Council, Taiwan (China)], E-mail: chuang@aec.gov.tw; Chou, H.P. [Department of Engineering and System Science, National Tsing Hua University, Taipei, Taiwan (China)], E-mail: hpc@mx.nthu.edu.tw; Chen, Y.B. [Nuclear Regulatory Division, Atomic Energy Council, Taiwan (China)], E-mail: ybchen@aec.gov.tw; Shiao, H. [Nuclear Regulatory Division, Atomic Energy Council, Taiwan (China)], E-mail: shiao@aec.gov.tw

    2008-05-15

    The Lungmen Nuclear Power Plant (LMNPP) is currently under construction in Taiwan, which consists of two Advanced Boiling Water Reactor (ABWR) units. The instrumentation and control (I and C) systems of the Lungmen NPS are based on the state-of-the-art modernized fully integrated digital design. The design and architecture of digital systems are inherently different from those of analog systems. We face challenges in areas where there is limited technical guidance and regulatory precedent. This paper presents regulatory overviews, regulatory requirements, current major regulatory issues, as well as the areas of regulatory concerns and the lessons learned on the digital I and C systems in the Lungmen Project.

  10. Regulatory considerations on new adjuvants and delivery systems.

    Science.gov (United States)

    Sesardic, D

    2006-04-12

    New and improved vaccines and delivery systems are increasingly being developed for prevention, treatment and diagnosis of human diseases. Prior to their use in humans, all new biological products must undergo pre-clinical evaluation. These pre-clinical studies are important not only to establish the biological properties of the material and to evaluate its possible risk to the public, but also to plan protocols for subsequent clinical trials from which safety and efficacy can be evaluated. For vaccines, evaluation in pre-clinical studies is particularly important as information gained may also contribute to identifying the optimum composition and formulation process and provide an opportunity to develop suitable indicator tests for quality control. Data from pre-clinical and laboratory evaluation studies, which continue during clinical studies, is used to support an application for marketing authorisation. Addition of a new adjuvant and exploration of new delivery systems for vaccines presents challenges to both manufacturers and regulatory authorities. Because no adjuvant is licensed as a medicinal product in its own right, but only as a component of a particular vaccine, pre-clinical and appropriate toxicology studies need to be designed on a case-by-case basis to evaluate the safety profile of the adjuvant and adjuvant/vaccine combination. Current regulatory requirements for the pharmaceutical and pre-clinical safety assessment of vaccines are insufficient and initiatives are in place to develop more specific guidelines for evaluation of adjuvants in vaccines.

  11. A hierarchical updating method for finite element model of airbag buffer system under landing impact

    Institute of Scientific and Technical Information of China (English)

    He Huan; Chen Zhe; He Cheng; Ni Lei; Chen Guoping

    2015-01-01

    In this paper, we propose an impact finite element (FE) model for an airbag landing buf-fer system. First, an impact FE model has been formulated for a typical airbag landing buffer sys-tem. We use the independence of the structure FE model from the full impact FE model to develop a hierarchical updating scheme for the recovery module FE model and the airbag system FE model. Second, we define impact responses at key points to compare the computational and experimental results to resolve the inconsistency between the experimental data sampling frequency and experi-mental triggering. To determine the typical characteristics of the impact dynamics response of the airbag landing buffer system, we present the impact response confidence factors (IRCFs) to evalu-ate how consistent the computational and experiment results are. An error function is defined between the experimental and computational results at key points of the impact response (KPIR) to serve as a modified objective function. A radial basis function (RBF) is introduced to construct updating variables for a surrogate model for updating the objective function, thereby converting the FE model updating problem to a soluble optimization problem. Finally, the developed method has been validated using an experimental and computational study on the impact dynamics of a classic airbag landing buffer system.

  12. EMIR: a configurable hierarchical system for event monitoring and incident response

    Science.gov (United States)

    Deich, William T. S.

    2014-07-01

    The Event Monitor and Incident Response system (emir) is a flexible, general-purpose system for monitoring and responding to all aspects of instrument, telescope, and general facility operations, and has been in use at the Automated Planet Finder telescope for two years. Responses to problems can include both passive actions (e.g. generating alerts) and active actions (e.g. modifying system settings). Emir includes a monitor-and-response daemon, plus graphical user interfaces and text-based clients that automatically configure themselves from data supplied at runtime by the daemon. The daemon is driven by a configuration file that describes each condition to be monitored, the actions to take when the condition is triggered, and how the conditions are aggregated into hierarchical groups of conditions. Emir has been implemented for the Keck Task Library (KTL) keyword-based systems used at Keck and Lick Observatories, but can be readily adapted to many event-driven architectures. This paper discusses the design and implementation of Emir , and the challenges in balancing the competing demands for simplicity, flexibility, power, and extensibility. Emir 's design lends itself well to multiple purposes, and in addition to its core monitor and response functions, it provides an effective framework for computing running statistics, aggregate values, and summary state values from the primitive state data generated by other subsystems, and even for creating quick-and-dirty control loops for simple systems.

  13. Mastering algebra retrains the visual system to perceive hierarchical structure in equations.

    Science.gov (United States)

    Marghetis, Tyler; Landy, David; Goldstone, Robert L

    2016-01-01

    Formal mathematics is a paragon of abstractness. It thus seems natural to assume that the mathematical expert should rely more on symbolic or conceptual processes, and less on perception and action. We argue instead that mathematical proficiency relies on perceptual systems that have been retrained to implement mathematical skills. Specifically, we investigated whether the visual system-in particular, object-based attention-is retrained so that parsing algebraic expressions and evaluating algebraic validity are accomplished by visual processing. Object-based attention occurs when the visual system organizes the world into discrete objects, which then guide the deployment of attention. One classic signature of object-based attention is better perceptual discrimination within, rather than between, visual objects. The current study reports that object-based attention occurs not only for simple shapes but also for symbolic mathematical elements within algebraic expressions-but only among individuals who have mastered the hierarchical syntax of algebra. Moreover, among these individuals, increased object-based attention within algebraic expressions is associated with a better ability to evaluate algebraic validity. These results suggest that, in mastering the rules of algebra, people retrain their visual system to represent and evaluate abstract mathematical structure. We thus argue that algebraic expertise involves the regimentation and reuse of evolutionarily ancient perceptual processes. Our findings implicate the visual system as central to learning and reasoning in mathematics, leading us to favor educational approaches to mathematics and related STEM fields that encourage students to adapt, not abandon, their use of perception.

  14. A hierarchical updating method for finite element model of airbag buffer system under landing impact

    Directory of Open Access Journals (Sweden)

    He Huan

    2015-12-01

    Full Text Available In this paper, we propose an impact finite element (FE model for an airbag landing buffer system. First, an impact FE model has been formulated for a typical airbag landing buffer system. We use the independence of the structure FE model from the full impact FE model to develop a hierarchical updating scheme for the recovery module FE model and the airbag system FE model. Second, we define impact responses at key points to compare the computational and experimental results to resolve the inconsistency between the experimental data sampling frequency and experimental triggering. To determine the typical characteristics of the impact dynamics response of the airbag landing buffer system, we present the impact response confidence factors (IRCFs to evaluate how consistent the computational and experiment results are. An error function is defined between the experimental and computational results at key points of the impact response (KPIR to serve as a modified objective function. A radial basis function (RBF is introduced to construct updating variables for a surrogate model for updating the objective function, thereby converting the FE model updating problem to a soluble optimization problem. Finally, the developed method has been validated using an experimental and computational study on the impact dynamics of a classic airbag landing buffer system.

  15. Risk transfer modeling among hierarchically associated stakeholders in development of space systems

    Science.gov (United States)

    Henkle, Thomas Grove, III

    Research develops an empirically derived cardinal model that prescribes handling and transfer of risks between organizations with hierarchical relationships. Descriptions of mission risk events, risk attitudes, and conditions for risk transfer are determined for client and underwriting entities associated with acquisition, production, and deployment of space systems. The hypothesis anticipates that large client organizations should be able to assume larger dollar-value risks of a program in comparison to smaller organizations even though many current risk transfer arrangements via space insurance violate this hypothesis. A literature survey covers conventional and current risk assessment methods, current techniques used in the satellite industry for complex system development, cardinal risk modeling, and relevant aspects of utility theory. Data gathered from open literature on demonstrated launch vehicle and satellite in-orbit reliability, annual space insurance premiums and losses, and ground fatalities and range damage associated with satellite launch activities are presented. Empirically derived models are developed for risk attitudes of space system clients and third-party underwriters associated with satellite system development and deployment. Two application topics for risk transfer are examined: the client-underwriter relationship on assumption or transfer of risks associated with first-year mission success, and statutory risk transfer agreements between space insurance underwriters and the US government to promote growth in both commercial client and underwriting industries. Results indicate that client entities with wealth of at least an order of magnitude above satellite project costs should retain risks to first-year mission success despite present trends. Furthermore, large client entities such as the US government should never pursue risk transfer via insurance under previously demonstrated probabilities of mission success; potential savings may

  16. Regulatory systems for prevention and control of rabies, Japan.

    Science.gov (United States)

    Takahashi-Omoe, Hiromi; Omoe, Katsuhiko; Okabe, Nobuhiko

    2008-09-01

    Japan is one of the few rabies-free countries. Although 3 imported cases of human rabies were seen in 1970 and 2006, no other cases have been reported for approximately 50 years. The elimination of rabies in Japan is attributed to not only its geographic isolation but also to effective prevention and control measures, such as registration and vaccination of domestic dogs, required quarantine of susceptible imported animals, and national plans of action based on scientific research. Countermeasures against rabies have been upgraded; an improved management system for domestic dogs under the amended Enforcement Regulations of the Rabies Prevention Law has been in effect since April 2007. The latest regulatory systems for preventing and controlling rabies provide an effective model for elimination of the disease worldwide.

  17. Regulatory control analysis and design for sewer systems

    DEFF Research Database (Denmark)

    Mollerup, Ane Loft; Mikkelsen, Peter Steen; Thornberg, Dines

    2015-01-01

    . To this end, four distinct modes of operation are identified (dry weather, filling, saturation and emptying) and for each of these the process gain matrix is found. Based on the gain matrices a controllability analysis is performed, to screen for suitable pairings between measurements and actuators......A systematic methodology for regulatory control analysis and design is adapted for sewer system operation and evaluated. The main challenge with adapting the methodology is the handling of the stochastic and transient nature of the rainfall disturbances, inherent to sewer system operation...... in the case study area of Copenhagen. The analysis effectively reduces the number of potential controlled variables, by considering the sensitivity of the measurements towards changes in the manipulated variables. Several potential pairings are generated and the best alternative is chosen for closed...

  18. Hierarchical statistical analysis of complex analog and mixed-signal systems

    Science.gov (United States)

    Webb, Matthew; Tang, Hua

    2014-12-01

    With increasing process parameter variations in nanometre regime, circuits and systems encounter significant performance variations and therefore statistical analysis has become increasingly important. For complex analog and mixed-signal circuits and systems, efficient yet accurate statistical analysis has been a challenge mainly due to significant simulation and modelling time. In the past years, there have been various approaches proposed for statistical analysis of analog and mixed-signal circuits. A recent work is reported to address statistical analysis for continuous-time Delta-Sigma modulators. In this article, we generalise that method and present a hierarchical method for efficient statistical analysis of complex analog and mixed-signal circuits while maintaining reasonable accuracy. At circuit level, we use the response surface modelling method to extract quadratic models of circuit-level performance parameters in terms of process parameters. Then at system level, we use behavioural models and apply the Monte-Carlo method for statistical evaluation of system performance parameters. We illustrate and validate the method on a continuous-time Delta-Sigma modulator and an analog filter.

  19. Hierarchical fiber-optic delamination detection system for carbon fiber reinforced plastic structures

    Science.gov (United States)

    Minakuchi, Shu; Banshoya, Hidehiko; Shingo, Ii; Takeda, Nobuo

    2012-10-01

    This study develops a delamination detection system by extending our previous approach for monitoring surface cracks in a large-scale composite structure. In the new system, numerous thin glass capillaries are embedded into a composite structure, and internal pressure in the built-in capillary sensors, based on comparative vacuum monitoring (CVM), is maintained as a vacuum. When delamination is induced, the capillary sensors located within the delaminated area are breached, and atmospheric air flows into the capillaries. The consequent pressure change within the capillaries is then converted into axial strain in a surface-mounted optical fiber through a transducing mechanism, which is connected to the capillaries. By monitoring the strain distribution along the optical fiber, it is possible to identify a transducing mechanism in which the pressure change occurred and thus to specify the location of the delamination. This study begins by establishing a novel sensor embedding/extracting method. The airflow characteristic in the capillary sensors is then comprehensively evaluated, determining the basic performance of the new system. The proposed detection technique is validated by taking a step-by-step approach, and finally the hierarchical fiber-optic delamination detection system is demonstrated. A further advance to be combined with a self-healing concept is also discussed.

  20. 论“神”的系统性%A Hierarchical System of Shen(神)

    Institute of Scientific and Technical Information of China (English)

    丁彰炫

    2001-01-01

    《内经》建立了新的神系统:天神-人神-五脏神系统。它把人为小宇宙之天人相应思想延伸到五脏,又把各藏认为是另一个宇宙。《内经》的这种天神-人神-五藏神之系统认识就是《内经》精神观之另一个特征,它认为天、人、藏是一个整体即太极体。天神、人神、藏神是主宰各太极体的规律,而且自身亦以一个整体存在,同时它们之间又相互影响。%Hierarchically,“Shen(神)” in Neijing(内经) has threelevels;“Cosmos-Shen(天神)” and “Man-Shen(人神)” and “WuZang-Shen(五藏神)”.“Cosmos Shen(天神)”,which is the “Great Law” is the basis of creation,change,develpoment,extinction of all things in the universe including man.“Man-Shen” which represents “Shen(神)” at the mundane level is the “Basic Principle” of human life,speaking broadly and mental function in a narrow sense. “WuZang-Shen(五藏神)” is lower level than “Man-Shen”. “WuZang-Shen” constitutes “Man-Shen” and simultaneously controlled by “Man-Shen”,with the characteristics of self-independence. Nejing systemizes the new notion of “Shen” system;the relation of “Cosmos-Shen”,“Man-Shen” and “WuZang-Shen” system. In the view of traditional chinese medicine,it is often said that the close relationship between Man and Cosmos is deeply reflected on the notion of microcosm. Neijing not only connects this notion of Cosmos with WuZang,but also regards each Zang as another Cosmos. The hierarchical system of “Shen” in Neijing is one of the characteristics of the epistemology of Neijing. It recognizes Cosmos,Man and Zang as the Integrity;“Taiji-Integrity(太极体)”. “Cosmos-Shen”,“Man-Shen” and “WuZang-Shen” are the principles and rules of each “Taiji-Integrity” and they also exist as the Integrity by themselves,having mutual influences on each other.

  1. A Rapid Prototyping Tool for Embedded, Real-Time Hierarchical Control Systems

    Directory of Open Access Journals (Sweden)

    Ramamoorthy Subramanian

    2008-01-01

    Full Text Available Abstract Laboratory Virtual Instrumentation and Engineering Workbench (LabVIEW is a graphical programming tool based on the dataflow language G. Recently, runtime support for a hard real-time environment has become available for LabVIEW, which makes it an option for embedded systems prototyping. Due to its characteristics, the environment presents itself as an ideal tool for both the design and implementation of embedded software. In this paper, we study the design and implementation of embedded software by using G as the specification language and the LabVIEW RT real-time platform. One of the main advantages of this approach is that the environment leads itself to a very smooth transition from design to implementation, allowing for powerful cosimulation strategies (e.g., hardware in the loop, runtime modeling. We characterize the semantics and formal model of computation of G. We compare it to other models of computation and develop design rules and algorithms to propose sound embedded design in the language. We investigate the specification and mapping of hierarchical control systems in LabVIEW and G. Finally, we describe the development of a state-of-the-art embedded motion control system using LabVIEW as the specification, simulation and implementation tool, using the proposed design principles. The solution is state-of-the-art in terms of flexibility and control performance.

  2. Optimal Hierarchical Decision-Making for Heat Source Selection of District Heating Systems

    Directory of Open Access Journals (Sweden)

    Fang Fang

    2014-01-01

    Full Text Available With the rapid development of China’s urbanization, the proportion between the heating consumption and the energy consumption of the whole society keeps rising in recent years. For a district heating system, the selection of the heat source makes significant impact on the energy efficiency and the pollutant emissions. By integrating the methods of the Analytic Hierarchy Process (AHP and the Preference Ranking Organization Method for Enrichment Evaluation (PROMETHEE, a multiple-attribute decision-making scheme for the heat source selection of district heating systems is proposed in this paper. As a core part of this scheme, a comprehensive benefit index with hierarchical parallel structure is constructed. The economic benefit, environment benefit, and technical benefit can be reflected with a certain percentage in the comprehensive benefit index. To test the efficiency of the proposed scheme, a case study for a large-scale district heating system in Beijing is carried out, where five kinds of heat sources (water source heat pump, ground source heat pump, gas-fired boiler, coal-fired boiler, and oil-fired boiler are taken into account. The analysis and instructions for the final sorting result are also demonstrated.

  3. A Hierarchical Auction-Based Mechanism for Real-Time Resource Allocation in Cloud Robotic Systems.

    Science.gov (United States)

    Wang, Lujia; Liu, Ming; Meng, Max Q-H

    2017-02-01

    Cloud computing enables users to share computing resources on-demand. The cloud computing framework cannot be directly mapped to cloud robotic systems with ad hoc networks since cloud robotic systems have additional constraints such as limited bandwidth and dynamic structure. However, most multirobotic applications with cooperative control adopt this decentralized approach to avoid a single point of failure. Robots need to continuously update intensive data to execute tasks in a coordinated manner, which implies real-time requirements. Thus, a resource allocation strategy is required, especially in such resource-constrained environments. This paper proposes a hierarchical auction-based mechanism, namely link quality matrix (LQM) auction, which is suitable for ad hoc networks by introducing a link quality indicator. The proposed algorithm produces a fast and robust method that is accurate and scalable. It reduces both global communication and unnecessary repeated computation. The proposed method is designed for firm real-time resource retrieval for physical multirobot systems. A joint surveillance scenario empirically validates the proposed mechanism by assessing several practical metrics. The results show that the proposed LQM auction outperforms state-of-the-art algorithms for resource allocation.

  4. A Rapid Prototyping Tool for Embedded, Real-Time Hierarchical Control Systems

    Directory of Open Access Journals (Sweden)

    Hugo Andrade

    2008-12-01

    Full Text Available Laboratory Virtual Instrumentation and Engineering Workbench (LabVIEW is a graphical programming tool based on the dataflow language G. Recently, runtime support for a hard real-time environment has become available for LabVIEW, which makes it an option for embedded systems prototyping. Due to its characteristics, the environment presents itself as an ideal tool for both the design and implementation of embedded software. In this paper, we study the design and implementation of embedded software by using G as the specification language and the LabVIEW RT real-time platform. One of the main advantages of this approach is that the environment leads itself to a very smooth transition from design to implementation, allowing for powerful cosimulation strategies (e.g., hardware in the loop, runtime modeling. We characterize the semantics and formal model of computation of G. We compare it to other models of computation and develop design rules and algorithms to propose sound embedded design in the language. We investigate the specification and mapping of hierarchical control systems in LabVIEW and G. Finally, we describe the development of a state-of-the-art embedded motion control system using LabVIEW as the specification, simulation and implementation tool, using the proposed design principles. The solution is state-of-the-art in terms of flexibility and control performance.

  5. Establishing a regulatory value chain model: An innovative approach to strengthening medicines regulatory systems in resource-constrained settings.

    Science.gov (United States)

    Chahal, Harinder Singh; Kashfipour, Farrah; Susko, Matt; Feachem, Neelam Sekhri; Boyle, Colin

    2016-05-01

    Medicines Regulatory Authorities (MRAs) are an essential part of national health systems and are charged with protecting and promoting public health through regulation of medicines. However, MRAs in resource-constrained settings often struggle to provide effective oversight of market entry and use of health commodities. This paper proposes a regulatory value chain model (RVCM) that policymakers and regulators can use as a conceptual framework to guide investments aimed at strengthening regulatory systems. The RVCM incorporates nine core functions of MRAs into five modules: (i) clear guidelines and requirements; (ii) control of clinical trials; (iii) market authorization of medical products; (iv) pre-market quality control; and (v) post-market activities. Application of the RVCM allows national stakeholders to identify and prioritize investments according to where they can add the most value to the regulatory process. Depending on the economy, capacity, and needs of a country, some functions can be elevated to a regional or supranational level, while others can be maintained at the national level. In contrast to a "one size fits all" approach to regulation in which each country manages the full regulatory process at the national level, the RVCM encourages leveraging the expertise and capabilities of other MRAs where shared processes strengthen regulation. This value chain approach provides a framework for policymakers to maximize investment impact while striving to reach the goal of safe, affordable, and rapidly accessible medicines for all.

  6. Pulp regeneration in a full-length human tooth root using a hierarchical nanofibrous microsphere system.

    Science.gov (United States)

    Li, Xiangwei; Ma, Chi; Xie, Xiaohua; Sun, Hongchen; Liu, Xiaohua

    2016-04-15

    While pulp regeneration using tissue engineering strategy has been explored for over a decade, successful regeneration of pulp tissues in a full-length human root with a one-end seal that truly simulates clinical endodontic treatment has not been achieved. To address this challenge, we designed and synthesized a unique hierarchical growth factor-loaded nanofibrous microsphere scaffolding system. In this system, vascular endothelial growth factor (VEGF) binds with heparin and is encapsulated in heparin-conjugated gelatin nanospheres, which are further immobilized in the nanofibers of an injectable poly(l-lactic acid) (PLLA) microsphere. This hierarchical microsphere system not only protects the VEGF from denaturation and degradation, but also provides excellent control of its sustained release. In addition, the nanofibrous PLLA microsphere integrates the extracellular matrix-mimicking architecture with a highly porous injectable form, efficiently accommodating dental pulp stem cells (DPSCs) and supporting their proliferation and pulp tissue formation. Our in vivo study showed the successful regeneration of pulp-like tissues that fulfilled the entire apical and middle thirds and reached the coronal third of the full-length root canal. In addition, a large number of blood vessels were regenerated throughout the canal. For the first time, our work demonstrates the success of pulp tissue regeneration in a full-length root canal, making it a significant step toward regenerative endodontics. The regeneration of pulp tissues in a full-length tooth root canal has been one of the greatest challenges in the field of regenerative endodontics, and one of the biggest barriers for its clinical application. In this study, we developed a unique approach to tackle this challenge, and for the first time, we successfully regenerated living pulp tissues in a full-length root canal, making it a significant step toward regenerative endodontics. This study will make positive scientific

  7. Skin-derived TSLP systemically expands regulatory T cells.

    Science.gov (United States)

    Leichner, Theresa M; Satake, Atsushi; Harrison, Victor Sanoe; Tanaka, Yukinori; Archambault, Angela S; Kim, Brian S; Siracusa, Mark C; Leonard, Warren J; Naji, Ali; Wu, Gregory F; Artis, David; Kambayashi, Taku

    2017-05-01

    Regulatory T cells (Tregs) are a subset of CD4(+) T cells with suppressive function and are critical for limiting inappropriate activation of T cells. Hence, the expansion of Tregs is an attractive strategy for the treatment of autoimmune diseases. Here, we demonstrate that the skin possesses the remarkable capacity to systemically expand Treg numbers by producing thymic stromal lymphopoietin (TSLP) in response to vitamin D receptor stimulation. An ∼2-fold increase in the proportion and absolute number of Tregs was observed in mice treated topically but not systemically with the Vitamin D3 analog MC903. This expansion of Tregs was dependent on TSLP receptor signaling but not on VDR signaling in hematopoietic cells. However, TSLP receptor expression by Tregs was not required for their proliferation. Rather, skin-derived TSLP promoted Treg expansion through dendritic cells. Importantly, treatment of skin with MC903 significantly lowered the incidence of autoimmune diabetes in non-obese diabetic mice and attenuated disease score in experimental autoimmune encephalomyelitis. Together, these data demonstrate that the skin has the remarkable potential to control systemic immune responses and that Vitamin D-mediated stimulation of skin could serve as a novel strategy to therapeutically modulate the systemic immune system for the treatment of autoimmunity. Copyright © 2017 Elsevier Ltd. All rights reserved.

  8. Hierarchical auxetic mechanical metamaterials.

    Science.gov (United States)

    Gatt, Ruben; Mizzi, Luke; Azzopardi, Joseph I; Azzopardi, Keith M; Attard, Daphne; Casha, Aaron; Briffa, Joseph; Grima, Joseph N

    2015-02-11

    Auxetic mechanical metamaterials are engineered systems that exhibit the unusual macroscopic property of a negative Poisson's ratio due to sub-unit structure rather than chemical composition. Although their unique behaviour makes them superior to conventional materials in many practical applications, they are limited in availability. Here, we propose a new class of hierarchical auxetics based on the rotating rigid units mechanism. These systems retain the enhanced properties from having a negative Poisson's ratio with the added benefits of being a hierarchical system. Using simulations on typical hierarchical multi-level rotating squares, we show that, through design, one can control the extent of auxeticity, degree of aperture and size of the different pores in the system. This makes the system more versatile than similar non-hierarchical ones, making them promising candidates for industrial and biomedical applications, such as stents and skin grafts.

  9. Hierarchical Auxetic Mechanical Metamaterials

    Science.gov (United States)

    Gatt, Ruben; Mizzi, Luke; Azzopardi, Joseph I.; Azzopardi, Keith M.; Attard, Daphne; Casha, Aaron; Briffa, Joseph; Grima, Joseph N.

    2015-02-01

    Auxetic mechanical metamaterials are engineered systems that exhibit the unusual macroscopic property of a negative Poisson's ratio due to sub-unit structure rather than chemical composition. Although their unique behaviour makes them superior to conventional materials in many practical applications, they are limited in availability. Here, we propose a new class of hierarchical auxetics based on the rotating rigid units mechanism. These systems retain the enhanced properties from having a negative Poisson's ratio with the added benefits of being a hierarchical system. Using simulations on typical hierarchical multi-level rotating squares, we show that, through design, one can control the extent of auxeticity, degree of aperture and size of the different pores in the system. This makes the system more versatile than similar non-hierarchical ones, making them promising candidates for industrial and biomedical applications, such as stents and skin grafts.

  10. Hierarchical Novelty-Familiarity Representation in the Visual System by Modular Predictive Coding.

    Science.gov (United States)

    Vladimirskiy, Boris; Urbanczik, Robert; Senn, Walter

    2015-01-01

    Predictive coding has been previously introduced as a hierarchical coding framework for the visual system. At each level, activity predicted by the higher level is dynamically subtracted from the input, while the difference in activity continuously propagates further. Here we introduce modular predictive coding as a feedforward hierarchy of prediction modules without back-projections from higher to lower levels. Within each level, recurrent dynamics optimally segregates the input into novelty and familiarity components. Although the anatomical feedforward connectivity passes through the novelty-representing neurons, it is nevertheless the familiarity information which is propagated to higher levels. This modularity results in a twofold advantage compared to the original predictive coding scheme: the familiarity-novelty representation forms quickly, and at each level the full representational power is exploited for an optimized readout. As we show, natural images are successfully compressed and can be reconstructed by the familiarity neurons at each level. Missing information on different spatial scales is identified by novelty neurons and complements the familiarity representation. Furthermore, by virtue of the recurrent connectivity within each level, non-classical receptive field properties still emerge. Hence, modular predictive coding is a biologically realistic metaphor for the visual system that dynamically extracts novelty at various scales while propagating the familiarity information.

  11. Hierarchical Bayesian methods for estimation of parameters in a longitudinal HIV dynamic system.

    Science.gov (United States)

    Huang, Yangxin; Liu, Dacheng; Wu, Hulin

    2006-06-01

    HIV dynamics studies have significantly contributed to the understanding of HIV infection and antiviral treatment strategies. But most studies are limited to short-term viral dynamics due to the difficulty of establishing a relationship of antiviral response with multiple treatment factors such as drug exposure and drug susceptibility during long-term treatment. In this article, a mechanism-based dynamic model is proposed for characterizing long-term viral dynamics with antiretroviral therapy, described by a set of nonlinear differential equations without closed-form solutions. In this model we directly incorporate drug concentration, adherence, and drug susceptibility into a function of treatment efficacy, defined as an inhibition rate of virus replication. We investigate a Bayesian approach under the framework of hierarchical Bayesian (mixed-effects) models for estimating unknown dynamic parameters. In particular, interest focuses on estimating individual dynamic parameters. The proposed methods not only help to alleviate the difficulty in parameter identifiability, but also flexibly deal with sparse and unbalanced longitudinal data from individual subjects. For illustration purposes, we present one simulation example to implement the proposed approach and apply the methodology to a data set from an AIDS clinical trial. The basic concept of the longitudinal HIV dynamic systems and the proposed methodologies are generally applicable to any other biomedical dynamic systems.

  12. A Hybrid System of Hierarchical Planning of Behaviour Selection Networks for Mobile Robot Control

    Directory of Open Access Journals (Sweden)

    Young-Seol Lee

    2014-04-01

    Full Text Available An office delivery robot receives a large amount of sensory data and there is uncertainty in its action outcomes. The robot should not only accomplish its goals using environmental information, but also consider various exceptions simultaneously. In this paper, we propose a hybrid system using hierarchical planning of modular behaviour selection networks to generate autonomous behaviour in the office delivery robot. Behaviour selection networks, one of the well-known behaviour-based methods suitable for goal-oriented tasks, are made up of several smaller behaviour modules. Planning is attached to the construct and adjust sequences of the modules by considering the sub-goals, the priority in each task and the user feedback. This helps the robot to quickly react in dynamic situations as well as achieve global goals efficiently. The proposed system is verified with both the Webot simulator and a Khepera II robot that runs in a real office environment carrying out delivery tasks. Experimental results have shown that a robot can achieve goals and generate module sequences successfully even in unpredictable situations. Additionally, the proposed planning method reduced the elapsed time during tasks by 17.5% since it adjusts the behaviour module sequences more effectively.

  13. Hierarchical effector protein transport by the Salmonella Typhimurium SPI-1 type III secretion system.

    Directory of Open Access Journals (Sweden)

    Brit Winnen

    Full Text Available BACKGROUND: Type III secretion systems (TTSS are employed by numerous pathogenic and symbiotic bacteria to inject a cocktail of different "effector proteins" into host cells. These effectors subvert host cell signaling to establish symbiosis or disease. METHODOLOGY/PRINCIPAL FINDINGS: We have studied the injection of SipA and SptP, two effector proteins of the invasion-associated Salmonella type III secretion system (TTSS-1. SipA and SptP trigger different host cell responses. SipA contributes to triggering actin rearrangements and invasion while SptP reverses the actin rearrangements after the invasion has been completed. Nevertheless, SipA and SptP were both pre-formed and stored in the bacterial cytosol before host cell encounter. By time lapse microscopy, we observed that SipA was injected earlier than SptP. Computer modeling revealed that two assumptions were sufficient to explain this injection hierarchy: a large number of SipA and SptP molecules compete for transport via a limiting number of TTSS; and the TTSS recognize SipA more efficiently than SptP. CONCLUSIONS/SIGNIFICANCE: This novel mechanism of hierarchical effector protein injection may serve to avoid functional interference between SipA and SptP. An injection hierarchy of this type may be of general importance, allowing bacteria to precisely time the host cell manipulation by type III effectors.

  14. Dynamics of triple black hole systems in hierarchically merging massive galaxies

    CERN Document Server

    Hoffman, L; Hoffman, Loren; Loeb, Abraham

    2006-01-01

    Galaxies with stellar bulges are generically observed to host supermassive black holes (SMBHs). The hierarchical merging of galaxies should therefore lead to the formation of SMBH binaries. Merging of old massive galaxies with little gas promotes the formation of low-density nuclei where SMBH binaries are expected to survive over long times. If the binary lifetime exceeds the typical time between mergers, then triple-black-hole systems may form. Such systems can lead to the ejection of one of the black holes (BHs) at a speed exceeding 1000 km/s, far greater than attainable through gravitational radiation recoil. We study the statistics of close triple-SMBH encounters in galactic nuclei by computing a series of three-body orbits with physically-motivated initial conditions appropriate for giant elliptical galaxies. Our simulations include a smooth background potential consisting of a stellar bulge plus a dark matter halo, drag forces due to gravitational radiation and dynamical friction on the stars and dark m...

  15. HD 35502: a hierarchical triple system with a magnetic B5IVpe primary

    CERN Document Server

    Sikora, James; Bohlender, David; Shultz, Matt; Adelman, Saul; Alecian, Evelyne; Hanes, David; Monin, Dmitry; Neiner, Coralie; MiMeS, the

    2016-01-01

    We present our analysis of HD~35502 based on high- and medium-resolution spectropolarimetric observations. Our results indicate that the magnetic B5IVsnp star is the primary component of a spectroscopic triple system and that it has an effective temperature of $18.4\\pm0.6\\,{\\rm kK}$, a mass of $5.7\\pm0.6\\,M_\\odot$, and a polar radius of $3.0^{+1.1}_{-0.5}\\,R_\\odot$. The two secondary components are found to be essentially identical A-type stars for which we derive effective temperatures ($8.9\\pm0.3\\,{\\rm kK}$), masses ($2.1\\pm0.2\\,M_\\odot$), and radii ($2.1\\pm0.4\\,R_\\odot$). We infer a hierarchical orbital configuration for the system in which the secondary components form a tight binary with an orbital period of $5.66866(6)\\,{\\rm d}$ that orbits the primary component with a period of over $40\\,{\\rm yrs}$. Least-Squares Deconvolution (LSD) profiles reveal Zeeman signatures in Stokes $V$ indicative of a longitudinal magnetic field produced by the B star ranging from approximately $-4$ to $0\\,{\\rm kG}$ with a m...

  16. A regulatory program for excretory system regeneration in planarians.

    Science.gov (United States)

    Scimone, M Lucila; Srivastava, Mansi; Bell, George W; Reddien, Peter W

    2011-10-01

    Planarians can regenerate any missing body part, requiring mechanisms for the production of organ systems in the adult, including their prominent tubule-based filtration excretory system called protonephridia. Here, we identify a set of genes, Six1/2-2, POU2/3, hunchback, Eya and Sall, that encode transcription regulatory proteins that are required for planarian protonephridia regeneration. During regeneration, planarian stem cells are induced to form a cell population in regeneration blastemas expressing Six1/2-2, POU2/3, Eya, Sall and Osr that is required for excretory system formation. POU2/3 and Six1/2-2 are essential for these precursor cells to form. Eya, Six1/2-2, Sall, Osr and POU2/3-related genes are required for vertebrate kidney development. We determined that planarian and vertebrate excretory cells express homologous proteins involved in reabsorption and waste modification. Furthermore, we identified novel nephridia genes. Our results identify a transcriptional program and cellular mechanisms for the regeneration of an excretory organ and suggest that metazoan excretory systems are regulated by genetic programs that share a common evolutionary origin.

  17. Numerical expression of general relationships in hierarchical data base management systems

    Energy Technology Data Exchange (ETDEWEB)

    Hall, R. C.

    1980-01-01

    The need for a means to express general relationships among entity occurrences in hierarchical data bases is addressed. Integer expression of general path segments is described as a means to meet this need. Operations on the expressions are also described. Two possible implementations are discussed. Both implementations are compatible with the hierarchical data model, and provide a logical extension that permits representation of many-to-many relationships. 4 figures.

  18. Synchronization of chaotic systems and identification of nonlinear systems by using recurrent hierarchical type-2 fuzzy neural networks.

    Science.gov (United States)

    Mohammadzadeh, Ardashir; Ghaemi, Sehraneh

    2015-09-01

    This paper proposes a novel approach for training of proposed recurrent hierarchical interval type-2 fuzzy neural networks (RHT2FNN) based on the square-root cubature Kalman filters (SCKF). The SCKF algorithm is used to adjust the premise part of the type-2 FNN and the weights of defuzzification and the feedback weights. The recurrence property in the proposed network is the output feeding of each membership function to itself. The proposed RHT2FNN is employed in the sliding mode control scheme for the synchronization of chaotic systems. Unknown functions in the sliding mode control approach are estimated by RHT2FNN. Another application of the proposed RHT2FNN is the identification of dynamic nonlinear systems. The effectiveness of the proposed network and its learning algorithm is verified by several simulation examples. Furthermore, the universal approximation of RHT2FNNs is also shown.

  19. Secular chaotic dynamics in hierarchical quadruple systems, with applications to hot Jupiters in stellar binaries and triples

    Science.gov (United States)

    Hamers, Adrian S.; Lai, Dong

    2017-09-01

    Hierarchical quadruple systems arise naturally in stellar binaries and triples that harbour planets. Examples are hot Jupiters (HJs) in stellar triple systems, and planetary companions to HJs in stellar binaries. The secular dynamical evolution of these systems is generally complex, with secular chaotic motion possible in certain parameter regimes. The latter can lead to extremely high eccentricities and, therefore, strong interactions such as efficient tidal evolution. These interactions are believed to play an important role in the formation of HJs through high-eccentricity migration. Nevertheless, a deeper understanding of the secular dynamics of these systems is still lacking. Here, we study in detail the secular dynamics of a special case of hierarchical quadruple systems in either the '2+2' or '3+1' configurations. We show how the equations of motion can be cast in a form representing a perturbed hierarchical three-body system, in which the outer orbital angular-momentum vector is precessing steadily around a fixed axis. In this case, we show that eccentricity excitation can be significantly enhanced when the precession period is comparable to the Lidov-Kozai oscillation time-scale of the inner orbit. This arises from an induced large mutual inclination between the inner and outer orbits driven by the precession of the outer orbit, even if the initial mutual inclination is small. We present a simplified semi-analytic model that describes the latter phenomenon.

  20. Modeling the Competitiveness of Indonesian Palm Oil Industry: A Conceptual Model Using Hierarchical Multi-Level System Approach

    Directory of Open Access Journals (Sweden)

    Roland Y.H. Silitonga

    2013-01-01

    Full Text Available Indonesian Palm Oil Industry has the largest market share in the world, but still faces problems in order to strengthen the level of competitiveness. Those problems are in the industry chains, government regulation and policy as meso environment, and macro economic condition. Therefore these three elements should be considered when analyzing the improvement of competitiveness. Here, the governmental element is hoped to create a conducive environment. This paper presents the industry competitiveness conceptual model, using hierarchical multilevel system approach. The Hierarchical multilevel system approach is used to accommodate the complexity of the industrial relation and the government position as the meso environment. The step to develop the model firstly is to define the relevant system. Secondly, is to formulate the output of the model that is competitiveness in the form of indicator. Then, the relevant system with competitiveness as the output is built into a conceptual model using hierarchical multilevel system. The conceptual model is then discussed to see if it can explain the relevant system, and the potential of it to be developed into mathematical model.

  1. Hierarchical Velocity Control Based on Differential Flatness for a DC/DC Buck Converter-DC Motor System

    Directory of Open Access Journals (Sweden)

    R. Silva-Ortigoza

    2014-01-01

    Full Text Available This paper presents a hierarchical controller that carries out the angular velocity trajectory tracking task for a DC motor driven by a DC/DC Buck converter. The high level control is related to the DC motor and the low level control is dedicated to the DC/DC Buck converter; both controls are designed via differential flatness. The high level control provides a desired voltage profile for the DC motor to achieve the tracking of a desired angular velocity trajectory. Then, a low level control is designed to ensure that the output voltage of the DC/DC Buck converter tracks the voltage profile imposed by the high level control. In order to experimentally verify the hierarchical controller performance, a DS1104 electronic board from dSPACE and Matlab-Simulink are used. The switched implementation of the hierarchical average controller is accomplished by means of pulse width modulation. Experimental results of the hierarchical controller for the velocity trajectory tracking task show good performance and robustness against the uncertainties associated with different system parameters.

  2. An Integrated Model Based on a Hierarchical Indices System for Monitoring and Evaluating Urban Sustainability

    Directory of Open Access Journals (Sweden)

    Xulin Guo

    2013-02-01

    Full Text Available Over 50% of world’s population presently resides in cities, and this number is expected to rise to ~70% by 2050. Increasing urbanization problems including population growth, urban sprawl, land use change, unemployment, and environmental degradation, have markedly impacted urban residents’ Quality of Life (QOL. Therefore, urban sustainability and its measurement have gained increasing attention from administrators, urban planners, and scientific communities throughout the world with respect to improving urban development and human well-being. The widely accepted definition of urban sustainability emphasizes the balancing development of three primary domains (urban economy, society, and environment. This article attempts to improve the aforementioned definition of urban sustainability by incorporating a human well-being dimension. Major problems identified in existing urban sustainability indicator (USI models include a weak integration of potential indicators, poor measurement and quantification, and insufficient spatial-temporal analysis. To tackle these challenges an integrated USI model based on a hierarchical indices system was established for monitoring and evaluating urban sustainability. This model can be performed by quantifying indicators using both traditional statistical approaches and advanced geomatic techniques based on satellite imagery and census data, which aims to provide a theoretical basis for a comprehensive assessment of urban sustainability from a spatial-temporal perspective.

  3. Mobile Agent Based Hierarchical Intrusion Detection System in Wireless Sensor Networks

    Directory of Open Access Journals (Sweden)

    Surraya Khanum

    2012-01-01

    Full Text Available Security mechanism is a fundamental requirement of wireless networks in general and Wireless Sensor Networks (WSN in particular. Therefore, it is necessary that this security concern must be articulate right from the beginning of the network design and deployment. WSN needs strong security mechanism as it is usually deployed in a critical, hostile and sensitive environment where human labour is usually not involved. However, due to inbuilt resource and computing restriction, security in WSN needs a special consideration. Traditional security techniques such as encryption, VPN, authentication and firewalls cannot be directly applied to WSN as it provides defence only against external threats. The existing literature shows that there seems an inverse relationship between strong security mechanism and efficient network resource utilization. In this research article, we have proposed a Mobile Agent Based Hierarchical Intrusion Detection System (MABHIDS for WSN. The Proposed scheme performs two levels of intrusion detection by utilizing minimum possible network resources. Our proposed idea enhance network lifetime by reducing the work load on Cluster Head (CH and it also provide enhanced level of security in WSN.

  4. Evolutionary dynamics and functional roles of regulatory systems in plants

    NARCIS (Netherlands)

    Berke, L.

    2015-01-01

    Transcription, the process of generating RNA copies of the genetic information stored in the DNA, is crucial for every organism. As with other essential processes in life, correct activation and repression of transcription is governed by complex regulatory mechanisms. These regulatory mechanisms ope

  5. About Hierarchical XML Structures, Replacement of Relational Data Structures in Construction and Implementation of ERP Systems

    Directory of Open Access Journals (Sweden)

    2007-01-01

    Full Text Available The projects essential objective is to develop a new ERP system, of homogeneous nature, based on XML structures, as a possible replacement for classic ERP systems. The criteria that guide the objective definition are modularity, portability and Web connectivity. This objective is connected to a series of secondary objectives, considering that the technological approach will be filtered through the economic, social and legislative environment for a validation-by-context study. Statistics and cybernetics are to be used for simulation purposes. The homogeneous approach is meant to provide strong modularity and portability, in relation with the n-tier principles, but the main advantage of the model is its opening to the semantic Web, based on a Small enterprise ontology defined with XML-driven languages. Shockwave solutions will be used for implementing client-oriented hypermedia elements and an XML Gate will be de-fined between black box modules, for a clear separation with obvious advantages. Security and the XMLTP project will be an important issue for XML transfers due to the conflict between the open architecture of the Web, the readability of XML data and the privacy elements which have to be preserved within a business environment. The projects finality is oriented on small business but the semantic Web perspective and the surprising new conflict between hierarchical/network data structures and relational ones will certainly widen its scope. The proposed model is meant to fulfill the IT compatibility requirements of the European environment, defined as a knowledge society. The paper is a brief of the contributions of the team re-search at the project type A applied to CNCSIS "Research on the Role of XML in Building Extensible and Homogeneous ERP Systems".

  6. MODEM: a multi-agent hierarchical structure to model the human motor control system.

    Science.gov (United States)

    Emadi Andani, Mehran; Bahrami, Fariba; Jabehdar Maralani, Parviz; Ijspeert, Auke Jan

    2009-12-01

    In this study, based on behavioral and neurophysiological facts, a new hierarchical multi-agent architecture is proposed to model the human motor control system. Performance of the proposed structure is investigated by simulating the control of sit to stand movement. To develop the model, concepts of mixture of experts, modular structure, and some aspects of equilibrium point hypothesis were brought together. We have called this architecture MODularized Experts Model (MODEM). Human motor system is modeled at the joint torque level and the role of the muscles has been embedded in the function of the joint compliance characteristics. The input to the motor system, i.e., the central command, is the reciprocal command. At the lower level, there are several experts to generate the central command to control the task according to the details of the movement. The number of experts depends on the task to be performed. At the higher level, a "gate selector" block selects the suitable subordinate expert considering the context of the task. Each expert consists of a main controller and a predictor as well as several auxiliary modules. The main controller of an expert learns to control the performance of a given task by generating appropriate central commands under given conditions and/or constraints. The auxiliary modules of this expert learn to scrutinize the generated central command by the main controller. Auxiliary modules increase their intervention to correct the central command if the movement error is increased due to an external disturbance. Each auxiliary module acts autonomously and can be interpreted as an agent. Each agent is responsible for one joint and, therefore, the number of the agents of each expert is equal to the number of joints. Our results indicate that this architecture is robust against external disturbances, signal-dependent noise in sensory information, and changes in the environment. We also discuss the neurophysiological and behavioral basis of

  7. Accurate crop classification using hierarchical genetic fuzzy rule-based systems

    Science.gov (United States)

    Topaloglou, Charalampos A.; Mylonas, Stelios K.; Stavrakoudis, Dimitris G.; Mastorocostas, Paris A.; Theocharis, John B.

    2014-10-01

    This paper investigates the effectiveness of an advanced classification system for accurate crop classification using very high resolution (VHR) satellite imagery. Specifically, a recently proposed genetic fuzzy rule-based classification system (GFRBCS) is employed, namely, the Hierarchical Rule-based Linguistic Classifier (HiRLiC). HiRLiC's model comprises a small set of simple IF-THEN fuzzy rules, easily interpretable by humans. One of its most important attributes is that its learning algorithm requires minimum user interaction, since the most important learning parameters affecting the classification accuracy are determined by the learning algorithm automatically. HiRLiC is applied in a challenging crop classification task, using a SPOT5 satellite image over an intensively cultivated area in a lake-wetland ecosystem in northern Greece. A rich set of higher-order spectral and textural features is derived from the initial bands of the (pan-sharpened) image, resulting in an input space comprising 119 features. The experimental analysis proves that HiRLiC compares favorably to other interpretable classifiers of the literature, both in terms of structural complexity and classification accuracy. Its testing accuracy was very close to that obtained by complex state-of-the-art classification systems, such as the support vector machines (SVM) and random forest (RF) classifiers. Nevertheless, visual inspection of the derived classification maps shows that HiRLiC is characterized by higher generalization properties, providing more homogeneous classifications that the competitors. Moreover, the runtime requirements for producing the thematic map was orders of magnitude lower than the respective for the competitors.

  8. Circuitry linking the Csr and stringent response global regulatory systems.

    Science.gov (United States)

    Edwards, Adrianne N; Patterson-Fortin, Laura M; Vakulskas, Christopher A; Mercante, Jeffrey W; Potrykus, Katarzyna; Vinella, Daniel; Camacho, Martha I; Fields, Joshua A; Thompson, Stuart A; Georgellis, Dimitris; Cashel, Michael; Babitzke, Paul; Romeo, Tony

    2011-06-01

    CsrA protein regulates important cellular processes by binding to target mRNAs and altering their translation and/or stability. In Escherichia coli, CsrA binds to sRNAs, CsrB and CsrC, which sequester CsrA and antagonize its activity. Here, mRNAs for relA, spoT and dksA of the stringent response system were found among 721 different transcripts that copurified with CsrA. Many of the transcripts that copurified with CsrA were previously determined to respond to ppGpp and/or DksA. We examined multiple regulatory interactions between the Csr and stringent response systems. Most importantly, DksA and ppGpp robustly activated csrB/C transcription (10-fold), while they modestly activated csrA expression. We propose that CsrA-mediated regulation is relieved during the stringent response. Gel shift assays confirmed high affinity binding of CsrA to relA mRNA leader and weaker interactions with dksA and spoT. Reporter fusions, qRT-PCR and immunoblotting showed that CsrA repressed relA expression, and (p)ppGpp accumulation during stringent response was enhanced in a csrA mutant. CsrA had modest to negligible effects on dksA and spoT expression. Transcription of dksA was negatively autoregulated via a feedback loop that tended to mask CsrA effects. We propose that the Csr system fine-tunes the stringent response and discuss biological implications of the composite circuitry.

  9. A GIS-Enabled, Michigan-Specific, Hierarchical Groundwater Modeling and Visualization System

    Science.gov (United States)

    Liu, Q.; Li, S.; Mandle, R.; Simard, A.; Fisher, B.; Brown, E.; Ross, S.

    2005-12-01

    Efficient management of groundwater resources relies on a comprehensive database that represents the characteristics of the natural groundwater system as well as analysis and modeling tools to describe the impacts of decision alternatives. Many agencies in Michigan have spent several years compiling expensive and comprehensive surface water and groundwater inventories and other related spatial data that describe their respective areas of responsibility. However, most often this wealth of descriptive data has only been utilized for basic mapping purposes. The benefits from analyzing these data, using GIS analysis functions or externally developed analysis models or programs, has yet to be systematically realized. In this talk, we present a comprehensive software environment that allows Michigan groundwater resources managers and frontline professionals to make more effective use of the available data and improve their ability to manage and protect groundwater resources, address potential conflicts, design cleanup schemes, and prioritize investigation activities. In particular, we take advantage of the Interactive Ground Water (IGW) modeling system and convert it to a customized software environment specifically for analyzing, modeling, and visualizing the Michigan statewide groundwater database. The resulting Michigan IGW modeling system (IGW-M) is completely window-based, fully interactive, and seamlessly integrated with a GIS mapping engine. The system operates in real-time (on the fly) providing dynamic, hierarchical mapping, modeling, spatial analysis, and visualization. Specifically, IGW-M allows water resources and environmental professionals in Michigan to: * Access and utilize the extensive data from the statewide groundwater database, interactively manipulate GIS objects, and display and query the associated data and attributes; * Analyze and model the statewide groundwater database, interactively convert GIS objects into numerical model features

  10. Systems of Systems Modeled by a Hierarchical Part-Whole State-Based Formalism

    Directory of Open Access Journals (Sweden)

    Luca Pazzi

    2013-11-01

    Full Text Available The paper presents an explicit state-based modeling approach aimed at modeling Systems of Systems behavior. The approach allows to specify and verify incrementally safety and liveness rules without using model checking techniques. The state-based approach allows moreover to use the system behavior directly as an interface, greatly improving the effectiveness of the recursive composition needed when assembling Systems of Systems. Such systems are, at the same time, both parts and wholes, thus giving a formal characterization to the notion of Holon.

  11. Reforming Financial Regulatory System in China after the Stock Market Turbulence:Problems and the Responses

    Institute of Scientific and Technical Information of China (English)

    Chen Zhenyun

    2016-01-01

    In an age when modern financial companies have become more and more complex,and if not adequately supervised,they can cause lethal harm to the stability of one’ s financial system. In post-financial crisis era,major developed economies have apparently rein-forced the function of the central bank in a country’ s financial regulatory system. Over the past several years,China has witnessed the huge changes in the financial sector but the financial regulatory framework remains the same as before. The Chinese stock market crash that began on June 12 2015 has urged the domestic regulators to restructure its financial regulatory sys-tem. The issue that which modal China should follow has perplexed Chinese policymakers. The governor of People’ s Bank of China,Zhou Xiaochuan,clearly responded to the problem concerning the current financial regulatory system, and indicated that Chinese regulators and policymakers had still studied the regulatory approach China would adopt during the press of People’s Congress of 2016. This paper reviews the development of China’s banking regulato-ry system,points out the deficiencies in its original system and analyzes the recent trends of fi-nancial regulatory reform in UK to learn the international experience for further reform re-garding financial regulatory system in China.

  12. Defining regulatory requirements for water supply systems in Vietnam

    Directory of Open Access Journals (Sweden)

    Deryushev Leonid Georgiyevich

    2014-01-01

    Full Text Available In the article the authors offer their suggestions for improving the reliability of the standardization requirements for water supply facilities in Vietnam, as an analog of building regulations of Russia 31.13330.2012. In Russia and other advanced countries the reliability of the designed water supply systems is usual to assess quantitatively. Guidelines on the reliability assessment of water supply systems and facilities have been offered by many researchers, but these proposals are not officially approved. Some methods for assessing the reliability of water supply facilities are informally used in practice when describing their quality. These evaluation methods are simple and useful. However, the given estimations defy common sense and regulatory requirements used by all the organizations, ministries and departments, for example, of Russia, in the process of allowances for restoration and repair of water supply facilities. Inadequacy of the water supply facilities assessment is shown on the example of assessing the reliability of pipeline system. If we take MTBF of specific length of the pipeline as reliability index for a pipeline system, for example, 5 km, a pipeline of the similar gauge, material and working conditions with the length of 5 m, according to the estimation on the basis of non-official approach, must have a value of MTBF 1000 times greater than with the length of 5 km. This conclusion runs counter to common sense, for the reason that all the pipes in the area of 5 km are identical, have the same load and rate of wear (corrosion, fouling, deformation, etc.. It was theoretically and practically proved that products of the same type in the same operating conditions (excluding determined impact of a person, work as an entity, which MTBF is equal to the average lifetime. It is proposed to take the average service life as a reliability indicator of a pipeline. Durability, but not failsafety of the pipe guarantees pipeline functioning

  13. Hybrid Viscosity Approaches to General Systems of Variational Inequalities with Hierarchical Fixed Point Problem Constraints in Banach Spaces

    Directory of Open Access Journals (Sweden)

    Lu-Chuan Ceng

    2014-01-01

    Full Text Available The purpose of this paper is to introduce and analyze hybrid viscosity methods for a general system of variational inequalities (GSVI with hierarchical fixed point problem constraint in the setting of real uniformly convex and 2-uniformly smooth Banach spaces. Here, the hybrid viscosity methods are based on Korpelevich’s extragradient method, viscosity approximation method, and hybrid steepest-descent method. We propose and consider hybrid implicit and explicit viscosity iterative algorithms for solving the GSVI with hierarchical fixed point problem constraint not only for a nonexpansive mapping but also for a countable family of nonexpansive mappings in X, respectively. We derive some strong convergence theorems under appropriate conditions. Our results extend, improve, supplement, and develop the recent results announced by many authors.

  14. A genomic approach to identify regulatory nodes in the transcriptional network of systemic acquired resistance in plants.

    Directory of Open Access Journals (Sweden)

    Dong Wang

    2006-11-01

    Full Text Available Many biological processes are controlled by intricate networks of transcriptional regulators. With the development of microarray technology, transcriptional changes can be examined at the whole-genome level. However, such analysis often lacks information on the hierarchical relationship between components of a given system. Systemic acquired resistance (SAR is an inducible plant defense response involving a cascade of transcriptional events induced by salicylic acid through the transcription cofactor NPR1. To identify additional regulatory nodes in the SAR network, we performed microarray analysis on Arabidopsis plants expressing the NPR1-GR (glucocorticoid receptor fusion protein. Since nuclear translocation of NPR1-GR requires dexamethasone, we were able to control NPR1-dependent transcription and identify direct transcriptional targets of NPR1. We show that NPR1 directly upregulates the expression of eight WRKY transcription factor genes. This large family of 74 transcription factors has been implicated in various defense responses, but no specific WRKY factor has been placed in the SAR network. Identification of NPR1-regulated WRKY factors allowed us to perform in-depth genetic analysis on a small number of WRKY factors and test well-defined phenotypes of single and double mutants associated with NPR1. Among these WRKY factors we found both positive and negative regulators of SAR. This genomics-directed approach unambiguously positioned five WRKY factors in the complex transcriptional regulatory network of SAR. Our work not only discovered new transcription regulatory components in the signaling network of SAR but also demonstrated that functional studies of large gene families have to take into consideration sequence similarity as well as the expression patterns of the candidates.

  15. Bounds for the time to failure of hierarchical systems of fracture

    DEFF Research Database (Denmark)

    Gómez, J.B.; Vázquez-Prada, M.; Moreno, Y.

    1999-01-01

    For years limited Monte Carlo simulations have led to the suspicion that the time to failure of hierarchically organized load-transfer models of fracture is nonzero for sets of infinite size. This fact could have profound significance in engineering practice and also in geophysics. Here, we devel...

  16. HD 181068: A Red Giant in a Triply Eclipsing Compact Hierarchical Triple System

    DEFF Research Database (Denmark)

    Derekas, A.; Kiss, Lazlo L.; Borkovits, T.

    2011-01-01

    by ground-based spectroscopy and interferometry, which show it to be a hierarchical triple with two types of mutual eclipses. The primary is a red giant that is in a 45-day orbit with a pair of red dwarfs in a close 0.9-day orbit. The red giant shows evidence for tidally induced oscillations that are driven...

  17. HD 35502: a hierarchical triple system with a magnetic B5IVpe primary

    Science.gov (United States)

    Sikora, J.; Wade, G. A.; Bohlender, D. A.; Shultz, M.; Adelman, S. J.; Alecian, E.; Hanes, D.; Monin, D.; Neiner, C.; MiMeS Collaboration; BinaMIcS Collaboration

    2016-08-01

    We present our analysis of HD 35502 based on high- and medium-resolution spectropolarimetric observations. Our results indicate that the magnetic B5IVsnp star is the primary component of a spectroscopic triple system and that it has an effective temperature of 18.4 ± 0.6 kK, a mass of 5.7 ± 0.6 M⊙, and a polar radius of 3.0^{+1.1}_{-0.5} R_{odot }. The two secondary components are found to be essentially identical A-type stars for which we derive effective temperatures (8.9 ± 0.3 kK), masses (2.1 ± 0.2 M⊙), and radii (2.1 ± 0.4 R⊙). We infer a hierarchical orbital configuration for the system in which the secondary components form a tight binary with an orbital period of 5.668 66(6) d that orbits the primary component with a period of over 40 yr. Least-Squares Deconvolution profiles reveal Zeeman signatures in Stokes V indicative of a longitudinal magnetic field produced by the B star ranging from approximately -4 to 0 kG with a median uncertainty of 0.4 kG. These measurements, along with the line variability produced by strong emission in Hα, are used to derive a rotational period of 0.853 807(3) d. We find that the measured v sin i = 75 ± 5 km s-1 of the B star then implies an inclination angle of the star's rotation axis to the line of sight of 24^{+6}_{-10}{}^circ. Assuming the Oblique Rotator Model, we derive the magnetic field strength of the B star's dipolar component (14^{+9}_{-3} kG) and its obliquity (63± 13deg). Furthermore, we demonstrate that the calculated Alfvén radius (41^{+17}_{-6}R_ast) and Kepler radius (2.1^{+0.4}_{-0.7}R_ast) place HD 35502's central B star well within the regime of centrifugal magnetosphere-hosting stars.

  18. Hierarchical photocatalysts.

    Science.gov (United States)

    Li, Xin; Yu, Jiaguo; Jaroniec, Mietek

    2016-05-01

    As a green and sustainable technology, semiconductor-based heterogeneous photocatalysis has received much attention in the last few decades because it has potential to solve both energy and environmental problems. To achieve efficient photocatalysts, various hierarchical semiconductors have been designed and fabricated at the micro/nanometer scale in recent years. This review presents a critical appraisal of fabrication methods, growth mechanisms and applications of advanced hierarchical photocatalysts. Especially, the different synthesis strategies such as two-step templating, in situ template-sacrificial dissolution, self-templating method, in situ template-free assembly, chemically induced self-transformation and post-synthesis treatment are highlighted. Finally, some important applications including photocatalytic degradation of pollutants, photocatalytic H2 production and photocatalytic CO2 reduction are reviewed. A thorough assessment of the progress made in photocatalysis may open new opportunities in designing highly effective hierarchical photocatalysts for advanced applications ranging from thermal catalysis, separation and purification processes to solar cells.

  19. Understanding the Dynamics of Gene Regulatory Systems; Characterisation and Clinical Relevance of cis-Regulatory Polymorphisms

    Directory of Open Access Journals (Sweden)

    Philip Cowie

    2013-01-01

    Full Text Available Modern genetic analysis has shown that most polymorphisms associated with human disease are non-coding. Much of the functional information contained in the non-coding genome consists of cis-regulatory sequences (CRSs that are required to respond to signal transduction cues that direct cell specific gene expression. It has been hypothesised that many diseases may be due to polymorphisms within CRSs that alter their responses to signal transduction cues. However, identification of CRSs, and the effects of allelic variation on their ability to respond to signal transduction cues, is still at an early stage. In the current review we describe the use of comparative genomics and experimental techniques that allow for the identification of CRSs building on recent advances by the ENCODE consortium. In addition we describe techniques that allow for the analysis of the effects of allelic variation and epigenetic modification on CRS responses to signal transduction cues. Using specific examples we show that the interactions driving these elements are highly complex and the effects of disease associated polymorphisms often subtle. It is clear that gaining an understanding of the functions of CRSs, and how they are affected by SNPs and epigenetic modification, is essential to understanding the genetic basis of human disease and stratification whilst providing novel directions for the development of personalised medicine.

  20. A Hybrid Hierarchical PPC System for Engineer-to-Order Enterprises

    Institute of Scientific and Technical Information of China (English)

    Li Xiaoping(李小平); Xu Xiaofei; Zhan Dechen

    2004-01-01

    For Engineer-to-Order (ETO) enterprises, both the capacity-oriented hierarchical production planning and control (HPPC) in which all resources, critical or ordinary, have the same importance and the material- oriented Operational Plan/Material Requirements Planning (OP/MRP) in which plans'consistency at different stages is seldom considered in advance do not completely satisfy its needs for production planning and control. HHPPC (hybrid hierarchical PPC), which combines HPPC with OP/MRP, is presented in which plans at most neighboring stages coordinate by ex-ante feedbacks and critical resources are utilized prior to ordinary ones by OP/MRP mode. The optimization problems arising at the Master Production Scheduling (MPS), operational plan and the fine planning stages in HHPPC are all modeled as project scheduling problems.

  1. Hierarchical functional connectivity between the core language system and the working memory system.

    Science.gov (United States)

    Makuuchi, Michiru; Friederici, Angela D

    2013-10-01

    Language processing inevitably involves working memory (WM) operations, especially for sentences with complex syntactic structures. Evidence has been provided for a neuroanatomical segregation between core syntactic processes and WM, but the dynamic relation between these systems still has to be explored. In the present functional magnetic resonance imaging (fMRI) study, we investigated the network dynamics of regions involved in WM operations which support sentence processing during reading, comparing a set of dynamic causal models (DCM) with different assumptions about the underlying connectional architecture. The DCMs incorporated the core language processing regions (pars opercularis and middle temporal gyrus), WM related regions (inferior frontal sulcus and intraparietal sulcus), and visual word form area (fusiform gyrus). The results indicate a processing hierarchy from the visual to WM to core language systems, and moreover, a clear increase of connectivity between WM regions and language regions as the processing load increases for syntactically complex sentences.

  2. Development of digital library system on regulatory documents for nuclear power plants

    Energy Technology Data Exchange (ETDEWEB)

    Lee, K. H.; Kim, K. J.; Yoon, Y. H.; Kim, M. W.; Lee, J. I. [KINS, Taejon (Korea, Republic of)

    2001-10-01

    The main objective of this study is to establish nuclear regulatory document retrieval system based on internet. With the advancement of internet and information processing technology, information management patterns are going through a new paradigm. Getting along the current of the time, it is general tendency to transfer paper-type documents into electronic-type documents through document scanning and indexing. This system consists of nuclear regulatory documents, nuclear safety documents, digital library, and information system with index and full text.

  3. An Incentive Based Regulatory System: A Bridge Too Far

    OpenAIRE

    2000-01-01

    This paper argues that the operation of the financial sector as a whole will not be as effective if market discipline is relied upon as the only tool of financial regulation. Before enacting any incentive mechanisms, there must be adequate built-in measures to prevent the exploitation of information asymmetries as well as greater harmonisation and co-ordination of regulatory standards between countries. The paper considers the "incentive problem" in regulation using a principal-agent framewor...

  4. Development of Regulatory Thermal-Hydraulic Analysis System (RETAS)

    Energy Technology Data Exchange (ETDEWEB)

    Ahn, Seung-Hoon; Kim, In-Goo; Kim, Hho-Jung; Cho, Yong Jin [Korea Institute of Nuclear Safety, Daejeon (Korea, Republic of)

    2007-10-15

    A review is provided of the reasons why the Korea Institute of Nuclear Safety needs improvement of the existing codes employed for a regulatory audit. The proposed new organization of the codes, developed or to be developed, is presented together with illustrative applications. Inspection of the quality assurance activities is planned to ensure the robustness of MARS (Multi-dimensional Analysis for Reactor Safety) code, served as a pivot of the organization.

  5. An electronic regulatory document management system for a clinical trial network.

    Science.gov (United States)

    Zhao, Wenle; Durkalski, Valerie; Pauls, Keith; Dillon, Catherine; Kim, Jaemyung; Kolk, Deneil; Silbergleit, Robert; Stevenson, Valerie; Palesch, Yuko

    2010-01-01

    A computerized regulatory document management system has been developed as a module in a comprehensive Clinical Trial Management System (CTMS) designed for an NIH-funded clinical trial network in order to more efficiently manage and track regulatory compliance. Within the network, several institutions and investigators are involved in multiple trials, and each trial has regulatory document requirements. Some of these documents are trial specific while others apply across multiple trials. The latter causes a possible redundancy in document collection and management. To address these and other related challenges, a central regulatory document management system was designed. This manuscript shares the design of the system as well as examples of it use in current studies. Copyright (c) 2009 Elsevier Inc. All rights reserved.

  6. Regulatory issues of digital instrumentation and control system in Lungmen project

    Energy Technology Data Exchange (ETDEWEB)

    Chuang, C.F. [Nuclear Regulation Division, Atomic Energy Council, Taipei (China); Chou, H.P. [Department of Engineering and System Science National Tsing Hua University, (China)

    2004-07-01

    The Lungmen Nuclear Power Station (LNPS) is currently under construction in Taiwan, which consists of 2 advanced boiling water reactor (ABWR) units. The instrumentation and control (IC) systems of the LNPS are based on the state-of-the-art modernized fully integrated digital design. These IC systems possess many advantages and distinguished features comparing to traditional analog IC systems, they enjoy set-point stability, self-diagnostic and automatic testing ability, fault tolerance and avoidance, low power requirements, data handling and storage capability, as well as enhanced human-machine interfaces. This paper presents regulatory overviews, regulatory requirements, current major regulatory issues, as well as the areas of regulatory concerns and the lessons learned on the digital IC systems in the Lungmen Project.

  7. Resilient model approximation for Markov jump time-delay systems via reduced model with hierarchical Markov chains

    Science.gov (United States)

    Zhu, Yanzheng; Zhang, Lixian; Sreeram, Victor; Shammakh, Wafa; Ahmad, Bashir

    2016-10-01

    In this paper, the resilient model approximation problem for a class of discrete-time Markov jump time-delay systems with input sector-bounded nonlinearities is investigated. A linearised reduced-order model is determined with mode changes subject to domination by a hierarchical Markov chain containing two different nonhomogeneous Markov chains. Hence, the reduced-order model obtained not only reflects the dependence of the original systems but also model external influence that is related to the mode changes of the original system. Sufficient conditions formulated in terms of bilinear matrix inequalities for the existence of such models are established, such that the resulting error system is stochastically stable and has a guaranteed l2-l∞ error performance. A linear matrix inequalities optimisation coupled with line search is exploited to solve for the corresponding reduced-order systems. The potential and effectiveness of the developed theoretical results are demonstrated via a numerical example.

  8. A novel 300 kW arc plasma inverter system based on hierarchical controlled building block structure

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    To date, the high power arc plasma technology is widely used. A next generation high power arc plasma system based on building block structure is presented. The whole arc plasma inverter system is composed of 12 paralleled units to increase the system output capability. The hierarchical control system is adopted to improve the reliability and flexibility of the high power arc plasma inverter. To ensure the reliable turn on and off of the IGBT module in each building block unit, a special pulse drive circuit is designed by using pulse transformer. The experimental result indicates that the high power arc plasma inverter system can transfer 300 kW arc plasma energy reliably with high efficiency.

  9. What is a comprehensive system of regulatory governance?; Que es un sistema Integral de Gestion Reglamentaria?

    Energy Technology Data Exchange (ETDEWEB)

    Real diaz, F. J.

    2011-07-01

    The progressive evolution and diversification of regulations concerning industrial safety has made their management increasingly complex, requiring more resources of organizations. Therefore, it is advisable that this management be made more efficient through systematization, specialization and the use of computing technologies. This is supported by the implementation of integrated regulatory management systems. This article explain the concept of integrated regulatory management systems, their structure and their advantages. It also includes a model for implementing them in an organization. (Author)

  10. Adaptive Hierarchical Sliding Mode Control with Input Saturation for Attitude Regulation of Multi-satellite Tethered System

    Science.gov (United States)

    Ma, Zhiqiang; Sun, Guanghui

    2017-06-01

    This paper proposes a novel adaptive hierarchical sliding mode control for the attitude regulation of the multi-satellite inline tethered system, where the input saturation is taken into account. The governing equations for the attitude dynamics of the three-satellite inline tethered system are derived firstly by utilizing Lagrangian mechanics theory. Considering the fact that the attitude of the central satellite can be adjusted by using the simple exponential stabilization scheme, the decoupling of the central satellite and the terminal ones is presented, and in addition, the new adaptive sliding mode control law is applied to stabilize the attitude dynamics of the two terminal satellites based on the synchronization and partial contraction theory. In the adaptive hierarchical sliding mode control design, the input is modeled as saturated input due to the fact that the flywheel torque is bounded, and meanwhile, an adaptive update rate is introduced to eliminate the effect of the saturated input and the external perturbation. The proposed control scheme can be applied on the two-satellite system to achieve fixed-point rotation. Numerical results validate the effectiveness of the proposed method.

  11. Adaptive Hierarchical Sliding Mode Control with Input Saturation for Attitude Regulation of Multi-satellite Tethered System

    Science.gov (United States)

    Ma, Zhiqiang; Sun, Guanghui

    2016-11-01

    This paper proposes a novel adaptive hierarchical sliding mode control for the attitude regulation of the multi-satellite inline tethered system, where the input saturation is taken into account. The governing equations for the attitude dynamics of the three-satellite inline tethered system are derived firstly by utilizing Lagrangian mechanics theory. Considering the fact that the attitude of the central satellite can be adjusted by using the simple exponential stabilization scheme, the decoupling of the central satellite and the terminal ones is presented, and in addition, the new adaptive sliding mode control law is applied to stabilize the attitude dynamics of the two terminal satellites based on the synchronization and partial contraction theory. In the adaptive hierarchical sliding mode control design, the input is modeled as saturated input due to the fact that the flywheel torque is bounded, and meanwhile, an adaptive update rate is introduced to eliminate the effect of the saturated input and the external perturbation. The proposed control scheme can be applied on the two-satellite system to achieve fixed-point rotation. Numerical results validate the effectiveness of the proposed method.

  12. Parallel hierarchical radiosity rendering

    Energy Technology Data Exchange (ETDEWEB)

    Carter, M.

    1993-07-01

    In this dissertation, the step-by-step development of a scalable parallel hierarchical radiosity renderer is documented. First, a new look is taken at the traditional radiosity equation, and a new form is presented in which the matrix of linear system coefficients is transformed into a symmetric matrix, thereby simplifying the problem and enabling a new solution technique to be applied. Next, the state-of-the-art hierarchical radiosity methods are examined for their suitability to parallel implementation, and scalability. Significant enhancements are also discovered which both improve their theoretical foundations and improve the images they generate. The resultant hierarchical radiosity algorithm is then examined for sources of parallelism, and for an architectural mapping. Several architectural mappings are discussed. A few key algorithmic changes are suggested during the process of making the algorithm parallel. Next, the performance, efficiency, and scalability of the algorithm are analyzed. The dissertation closes with a discussion of several ideas which have the potential to further enhance the hierarchical radiosity method, or provide an entirely new forum for the application of hierarchical methods.

  13. ξTauri: a unique laboratory to study the dynamic interaction in a compact hierarchical quadruple system

    Science.gov (United States)

    Nemravová, J. A.; Harmanec, P.; Brož, M.; Vokrouhlický, D.; Mourard, D.; Hummel, C. A.; Cameron, C.; Matthews, J. M.; Bolton, C. T.; Božić, H.; Chini, R.; Dembsky, T.; Engle, S.; Farrington, C.; Grunhut, J. H.; Guenther, D. B.; Guinan, E. F.; Korčáková, D.; Koubský, P.; Kříček, R.; Kuschnig, R.; Mayer, P.; McCook, G. P.; Moffat, A. F. J.; Nardetto, N.; Prša, A.; Ribeiro, J.; Rowe, J.; Rucinski, S.; Škoda, P.; Šlechta, M.; Tallon-Bosc, I.; Votruba, V.; Weiss, W. W.; Wolf, M.; Zasche, P.; Zavala, R. T.

    2016-10-01

    Context. Compact hierarchical systems are important because the effects caused by the dynamical interaction among its members occur ona human timescale. These interactions play a role in the formation of close binaries through Kozai cycles with tides. One such system is ξ Tauri: it has three hierarchical orbits: 7.14 d (eclipsing components Aa, Ab), 145 d (components Aa+Ab, B), and 51 yr (components Aa+Ab+B, C). Aims: We aim to obtain physical properties of the system and to study the dynamical interaction between its components. Methods: Our analysis is based on a large series of spectroscopic photometric (including space-borne) observations and long-baseline optical and infrared spectro-interferometric observations. We used two approaches to infer the system properties: a set of observation-specific models, where all components have elliptical trajectories, and an N-body model, which computes the trajectory of each component by integrating Newton's equations of motion. Results: The triple subsystem exhibits clear signs of dynamical interaction. The most pronounced are the advance of the apsidal line and eclipse-timing variations. We determined the geometry of all three orbits using both observation-specific and N-body models. The latter correctly accounted for observed effects of the dynamical interaction, predicted cyclic variations of orbital inclinations, and determined the sense of motion of all orbits. Using perturbation theory, we demonstrate that prominent secular and periodic dynamical effects are explainable with a quadrupole interaction. We constrained the basic properties of all components, especially of members of the inner triple subsystem and detected rapid low-amplitude light variations that we attribute to co-rotating surface structures of component B. We also estimated the radius of component B. Properties of component C remain uncertain because of its low relative luminosity. We provide an independent estimate of the distance to the system

  14. A Decentralized Approach to the Formulation of Hypotheses: A Hierarchical Structural Model for a Prion Self-Assembled System

    Science.gov (United States)

    Wang, Mingyang; Zhang, Feifei; Song, Chao; Shi, Pengfei; Zhu, Jin

    2016-07-01

    Innovation in hypotheses is a key transformative driver for scientific development. The conventional centralized hypothesis formulation approach, where a dominant hypothesis is typically derived from a primary phenomenon, can, inevitably, impose restriction on the range of conceivable experiments and legitimate hypotheses, and ultimately impede understanding of the system of interest. We report herein the proposal of a decentralized approach for the formulation of hypotheses, through initial preconception-free phenomenon accumulation and subsequent reticular logical reasoning processes. The two-step approach can provide an unbiased, panoramic view of the system and as such should enable the generation of a set of more coherent and therefore plausible hypotheses. As a proof-of-concept demonstration of the utility of this open-ended approach, a hierarchical model has been developed for a prion self-assembled system, allowing insight into hitherto elusive static and dynamic features associated with this intriguing structure.

  15. Fluctuation relations between hierarchical kinetically equivalent networks with Arrhenius-type transitions and their roles in systems and structural biology

    Science.gov (United States)

    Deng, De-Ming; Lu, Yi-Ta; Chang, Cheng-Hung

    2017-06-01

    The legality of using simple kinetic schemes to determine the stochastic properties of a complex system depends on whether the fluctuations generated from hierarchical equivalent schemes are consistent with one another. To analyze this consistency, we perform lumping processes on the stochastic differential equations and the generalized fluctuation-dissipation theorem and apply them to networks with the frequently encountered Arrhenius-type transition rates. The explicit Langevin force derived from those networks enables us to calculate the state fluctuations caused by the intrinsic and extrinsic noises on the free energy surface and deduce their relations between kinetically equivalent networks. In addition to its applicability to wide classes of network related systems, such as those in structural and systems biology, the result sheds light on the fluctuation relations for general physical variables in Keizer's canonical theory.

  16. Coevolution of Information Processing and Topology in Hierarchical Adaptive Random Boolean Networks

    CERN Document Server

    Gorski, Piotr J; Holyst, Janusz A

    2015-01-01

    Random Boolean networks (RBNs) are frequently employed for modelling complex systems driven by information processing, e.g. for gene regulatory networks (GRNs). Here we propose a hierarchical adaptive RBN (HARBN) as a system consisting of distinct adaptive RBNs - subnetworks - connected by a set of permanent interlinks. Information measures and internal subnetworks topology of HARBN coevolve and reach steady-states that are specific for a given network structure. We investigate mean node information, mean edge information as well as a mean node degree as functions of model parameters and demonstrate HARBN's ability to describe complex hierarchical systems.

  17. Management and share of regulatory information through web; development of regulatory information management system for Korea next generation reactors

    Energy Technology Data Exchange (ETDEWEB)

    Lee, J. S.; Lee, J. H.; Jeong, Y. H.; Lee, S. H. [KINS, Taejon (Korea, Republic of); Yun, Y. C.; Park, M. I. [LG-EDS Systems, Seoul (Korea, Republic of)

    2001-05-01

    The Regulatory Information Management System developed by the Korea Institute of Nuclear Safety supports researchers who are in charge of developing SRRG for the Korea Next Generation Reactors, manage the developed SRRG and development process, and make it possible to share the SRRG information and background knowledge through the internet with the nuclear-related personnel and the public. From the experience of the system operation, the search engine is repalced to manage the native SRRG files directly. This change eliminates the inconsistency between native files and database files and improve the search exactness by automatic indexing function. The user interface of the internet homepage (http://kngr.kins.re.kr) is completely rebuilded and allows SRRG developers to manage the search system and the atomic energy regulations database on the Web without the help of the client programs. General users are also able to utilize more convenient search function and additional information by the improved interface. The system is running under the backup system and firewall system for the data protection and security.

  18. Subpopulations of Regulatory T Cells in Rheumatoid Arthritis, Systemic Lupus Erythematosus, and Behcet's Disease

    OpenAIRE

    Kim, Jae-Ryong; Chae, Jin-Nyeong; Kim, Sang-Hyon; Ha, Jung-Sook

    2012-01-01

    Recently, subpopulations of regulatory T (Treg) cells, resting Treg (rTreg) and activated Treg (aTreg), have been discovered. The authors investigated the relationship between the change of Treg, aTreg and rTreg and autoimmune diseases. Treg cells and those subpopulations were analyzed by using the human regulatory T cell staining kit and CD45RA surface marker for 42 rheumatoid arthritis (RA), 13 systemic lupus sclerosis (SLE), 7 Behcet's disease (BD), and 22 healthy controls. The proportion ...

  19. Hierarchical Modulation with Vector Rotation for E-MBMS Transmission in LTE Systems

    Directory of Open Access Journals (Sweden)

    Hui Zhao

    2010-01-01

    Full Text Available Enhanced Multimedia Broadcast and Multicast Service (E-MBMS is considered of key importance for the proliferation of Long-Term Evolution (LTE network in mobile market. Hierarchical modulation (HM, which involves a “base-layer” (BL and an “enhancement-layer” (EL bit streams, is a simple technique for achieving tradeoff between service quality and radio coverage. Therefore, it is appealing for MBMS. Generally, HM suffers from the severe performance degradation of the less protected EL stream. In this paper, HM with vector rotation operation introduced to EL stream is proposed, in order to improve EL's performance. With the proper interleaving in frequency domain, this operation can exploit the inherent diversity gain from the multipath channel. In this way, HM with vector rotation can effectively enhance multimedia broadcasting on quality video and coverage. The simulation results with scalable video coding (SVC as source show the significant benefits in comparison with the conventional HM and alternative schemes.

  20. A neurodynamical model of visual attention: feedback enhancement of spatial resolution in a hierarchical system.

    Science.gov (United States)

    Deco, G; Zihl, J

    2001-01-01

    Human beings have the capacity to recognize objects in natural visual scenes with high efficiency despite the complexity of such scenes, which usually contain multiple objects. One possible mechanism for dealing with this problem is selective attention. Psychophysical evidence strongly suggests that selective attention can enhance the spatial resolution in the input region corresponding to the focus of attention. In this work we adopt a computational neuroscience perspective to analyze the attentional enhancement of spatial resolution in the area containing the objects of interest. We extend and apply the computational model of Deco and Schürmann (2000), which consists of several modules with feedforward and feedback interconnections describing the mutual links between different areas of the visual cortex. Each module analyses the visual input with different spatial resolution and can be thought of as a hierarchical predictor at a given level of resolution. Moreover, each hierarchical predictor has a submodule that consists of a group of neurons performing a biologically based 2D Gabor wavelet transformation at a given resolution level. The attention control decides in which local regions the spatial resolution should be enhanced in a serial fashion. In this sense, the scene is first analyzed at a coarse resolution level, and the focus of attention enhances iteratively the resolution at the location of an object until the object is identified. We propose and simulate new psychophysical experiments where the effect of the attentional enhancement of spatial resolution can be demonstrated by predicting different reaction time profiles in visual search experiments where the target and distractors are defined at different levels of resolution.

  1. Hierarchical Bayesian Data Analysis in Radiometric SAR System Calibration: A Case Study on Transponder Calibration with RADARSAT-2 Data

    Directory of Open Access Journals (Sweden)

    Björn J. Döring

    2013-12-01

    Full Text Available A synthetic aperture radar (SAR system requires external absolute calibration so that radiometric measurements can be exploited in numerous scientific and commercial applications. Besides estimating a calibration factor, metrological standards also demand the derivation of a respective calibration uncertainty. This uncertainty is currently not systematically determined. Here for the first time it is proposed to use hierarchical modeling and Bayesian statistics as a consistent method for handling and analyzing the hierarchical data typically acquired during external calibration campaigns. Through the use of Markov chain Monte Carlo simulations, a joint posterior probability can be conveniently derived from measurement data despite the necessary grouping of data samples. The applicability of the method is demonstrated through a case study: The radar reflectivity of DLR’s new C-band Kalibri transponder is derived through a series of RADARSAT-2 acquisitions and a comparison with reference point targets (corner reflectors. The systematic derivation of calibration uncertainties is seen as an important step toward traceable radiometric calibration of synthetic aperture radars.

  2. Safety Justification of Software Systems. Software Based Safety Systems. Regulatory Inspection Handbook

    Energy Technology Data Exchange (ETDEWEB)

    Dahll, Gustav (OECD Halden Project, Halden (NO)); Liwaang, Bo (Swedish Nuclear Power Inspectorate, Stockholm (Sweden)); Wainwright, Norman (Wainwright Safety Advice (GB))

    2006-07-01

    The introduction of new software based technology in the safety systems in nuclear power plants also makes it necessary to develop new strategies for regulatory review and assessment of these new systems that is more focused on reviewing the processes at the different phases in design phases during the system life cycle. It is a general requirement that the licensee shall perform different kinds of reviews. From a regulatory point of view it is more cost effective to assess that the design activities at the suppliers and the review activities within the development project are performed with good quality. But the change from more technical reviews over to the development process oriented approach also cause problems. When reviewing development and quality aspects there are no 'hard facts' that can be judged against some specified criteria, the issues are more 'soft' and are more to build up structure of arguments and evidences that the requirements are met. The regulatory review strategy must therefore change to follow the development process over the whole life cycle from concept phase until installation and operation. Even if we know what factors that is of interest we need some guidance on how to interpret and judge the information.For that purpose SKl started research activities in this area at the end of the 1990s. In the first phase, in co-operation with Gustav Dahll at the Halden project, a life cycle model was selected. For the different phases a qualitative influence net was constructed of the type that is used in Bayesian Believe Network together with a discussion on different issues involved. In the second phase of the research work, in co-operation with Norman Wainwright, a former NII inspector, information from a selection of the most important sources as guidelines, IAEA and EC reports etc, was mapped into the influence net structure (the total list on used sources are in the report). The result is presented in the form of

  3. The development of regulatory expectations for computer-based safety systems for the UK nuclear programme

    Energy Technology Data Exchange (ETDEWEB)

    Hughes, P. J. [HM Nuclear Installations Inspectorate Marine Engineering Submarines Defence Nuclear Safety Regulator Serco Assurance Redgrave Court, Merton Road, Bootle L20 7HS (United Kingdom); Westwood, R.N; Mark, R. T. [FLEET HQ, Leach Building, Whale Island, Portsmouth, PO2 8BY (United Kingdom); Tapping, K. [Serco Assurance,Thomson House, Risley, Warrington, WA3 6GA (United Kingdom)

    2006-07-01

    The Nuclear Installations Inspectorate (NII) of the UK's Health and Safety Executive (HSE) has completed a review of their Safety Assessment Principles (SAPs) for Nuclear Installations recently. During the period of the SAPs review in 2004-2005 the designers of future UK naval reactor plant were optioneering the control and protection systems that might be implemented. Because there was insufficient regulatory guidance available in the naval sector to support this activity the Defence Nuclear Safety Regulator (DNSR) invited the NII to collaborate with the production of a guidance document that provides clarity of regulatory expectations for the production of safety cases for computer based safety systems. A key part of producing regulatory expectations was identifying the relevant extant standards and sector guidance that reflect good practice. The three principal sources of such good practice were: IAEA Safety Guide NS-G-1.1 (Software for Computer Based Systems Important to Safety in Nuclear Power Plants), European Commission consensus document (Common Position of European Nuclear Regulators for the Licensing of Safety Critical Software for Nuclear Reactors) and IEC nuclear sector standards such as IEC60880. A common understanding has been achieved between the NII and DNSR and regulatory guidance developed which will be used by both NII and DNSR in the assessment of computer-based safety systems and in the further development of more detailed joint technical assessment guidance for both regulatory organisations. (authors)

  4. Distributed mixed-integer fuzzy hierarchical programming for municipal solid waste management. Part I: System identification and methodology development.

    Science.gov (United States)

    Cheng, Guanhui; Huang, Guohe; Dong, Cong; Xu, Ye; Chen, Xiujuan; Chen, Jiapei

    2017-03-01

    Due to the existence of complexities of heterogeneities, hierarchy, discreteness, and interactions in municipal solid waste management (MSWM) systems such as Beijing, China, a series of socio-economic and eco-environmental problems may emerge or worsen and result in irredeemable damages in the following decades. Meanwhile, existing studies, especially ones focusing on MSWM in Beijing, could hardly reflect these complexities in system simulations and provide reliable decision support for management practices. Thus, a framework of distributed mixed-integer fuzzy hierarchical programming (DMIFHP) is developed in this study for MSWM under these complexities. Beijing is selected as a representative case. The Beijing MSWM system is comprehensively analyzed in many aspects such as socio-economic conditions, natural conditions, spatial heterogeneities, treatment facilities, and system complexities, building a solid foundation for system simulation and optimization. Correspondingly, the MSWM system in Beijing is discretized as 235 grids to reflect spatial heterogeneity. A DMIFHP model which is a nonlinear programming problem is constructed to parameterize the Beijing MSWM system. To enable scientific solving of it, a solution algorithm is proposed based on coupling of fuzzy programming and mixed-integer linear programming. Innovations and advantages of the DMIFHP framework are discussed. The optimal MSWM schemes and mechanism revelations will be discussed in another companion paper due to length limitation.

  5. New dedicated AMS system at the Nuclear Regulatory Authority in Argentina

    Energy Technology Data Exchange (ETDEWEB)

    Beninson, D.; D' Amatto, E.; Oliveira, A.A.; Stark, J.W.; Bonino, N.O.; Bustos, G.R.; Alvarez, D.E.; Amodei, A.J.; Bonino, A.G.; Giannico, M.A.; Pomar, C. E-mail: cpomar@sede.arn.gov.ar

    2000-10-01

    At present, a new AMS system is being installed, at the Nuclear Regulatory Authority, in Argentina. The main goal of the system will be AMS assays of actinides in the area of nuclear safeguards. The installation of the facility started in January 1998. The present status of the project is described.

  6. booc.io: An Education System with Hierarchical Concept Maps and Dynamic Non-linear Learning Plans.

    Science.gov (United States)

    Schwab, Michail; Strobelt, Hendrik; Tompkin, James; Fredericks, Colin; Huff, Connor; Higgins, Dana; Strezhnev, Anton; Komisarchik, Mayya; King, Gary; Pfister, Hanspeter

    2017-01-01

    Information hierarchies are difficult to express when real-world space or time constraints force traversing the hierarchy in linear presentations, such as in educational books and classroom courses. We present booc.io, which allows linear and non-linear presentation and navigation of educational concepts and material. To support a breadth of material for each concept, booc.io is Web based, which allows adding material such as lecture slides, book chapters, videos, and LTIs. A visual interface assists the creation of the needed hierarchical structures. The goals of our system were formed in expert interviews, and we explain how our design meets these goals. We adapt a real-world course into booc.io, and perform introductory qualitative evaluation with students.

  7. A hierarchical 3D segmentation method and the definition of vertebral body coordinate systems for QCT of the lumbar spine.

    Science.gov (United States)

    Mastmeyer, André; Engelke, Klaus; Fuchs, Christina; Kalender, Willi A

    2006-08-01

    We have developed a new hierarchical 3D technique to segment the vertebral bodies in order to measure bone mineral density (BMD) with high trueness and precision in volumetric CT datasets. The hierarchical approach starts with a coarse separation of the individual vertebrae, applies a variety of techniques to segment the vertebral bodies with increasing detail and ends with the definition of an anatomic coordinate system for each vertebral body, relative to which up to 41 trabecular and cortical volumes of interest are positioned. In a pre-segmentation step constraints consisting of Boolean combinations of simple geometric shapes are determined that enclose each individual vertebral body. Bound by these constraints viscous deformable models are used to segment the main shape of the vertebral bodies. Volume growing and morphological operations then capture the fine details of the bone-soft tissue interface. In the volumes of interest bone mineral density and content are determined. In addition, in the segmented vertebral bodies geometric parameters such as volume or the length of the main axes of inertia can be measured. Intra- and inter-operator precision errors of the segmentation procedure were analyzed using existing clinical patient datasets. Results for segmented volume, BMD, and coordinate system position were below 2.0%, 0.6%, and 0.7%, respectively. Trueness was analyzed using phantom scans. The bias of the segmented volume was below 4%; for BMD it was below 1.5%. The long-term goal of this work is improved fracture prediction and patient monitoring in the field of osteoporosis. A true 3D segmentation also enables an accurate measurement of geometrical parameters that may augment the clinical value of a pure BMD analysis.

  8. Sharing regulatory data as tools for strengthening health systems in the Region of the Americas.

    Science.gov (United States)

    Sousa, Varley Dias; Ramalho, Pedro I; Silveira, Dâmaris

    2016-05-01

    Regulatory transparency is an imperative characteristic of a reliable National Regulatory Authority. In the region of the Americas, the process of building an open government is still fragile and fragmented across various Health Regulatory Agencies (HRAs) and Regional Reference Authorities (RRAs). This study assessed the transparency status of RRAs, focusing on various medicine life-cycle documents (the Medicine Dossier, Clinical Trial Report, and Inspection Report) as tools for strengthening health systems. Based on a narrative (nonsystematic) review of RRA regulatory transparency, transparency status was classified as one of two types: public disclosure of information (intra-agency data) and data- and work-sharing (inter-agency data). The risks/benefits of public disclosure of medicine-related information were assessed, taking into account 1) the involvement and roles of multiple stakeholders (health care professionals, regulators, industry, community, and academics) and 2) the protection of commercial and personal confidential data. Inter-agency data- and work-sharing was evaluated in the context of harmonization and cooperation projects that focus on regulatory convergence. Technical and practical steps for establishing an openness directive for the pharmaceutical regulatory environment are proposed to improve and strengthen health systems in the Americas. Addressing these challenges requires leadership from entities such as the Pan American Health Organization to steer and support collaborative regional alliances that advance the development and establishment of a trustworthy regulatory environment and a sustainable public health system in the Americas, using international successful initiatives as reference and taking into account the domestic characteristics and experiences of each individual country.

  9. A search for tight hierarchical triple systems amongst the eclipsing binaries in the CoRoT fields

    Science.gov (United States)

    Hajdu, T.; Borkovits, T.; Forgács-Dajka, E.; Sztakovics, J.; Marschalkó, G.; Benkő, J. M.; Klagyivik, P.; Sallai, M. J.

    2017-10-01

    We report a comprehensive search for hierarchical triple stellar system candidates amongst eclipsing binaries (EBs) observed by the CoRoT spacecraft. We calculate and check eclipse timing variation (ETV) diagrams for almost 1500 EBs in an automated manner. We identify five relatively short period Algol systems for which our combined light-curve and complex ETV analyses (including both the light-travel time effect and short-term dynamical third-body perturbations) resulted in consistent third-body solutions. The computed periods of the outer bodies are between 82 and 272 d (with an alternative solution of 831 d for one of the targets). We find that the inner and outer orbits are near coplanar in all but one case. The dynamical masses of the outer subsystems determined from the ETV analyses are consistent with both the results of our light-curve analyses and the spectroscopic information available in the literature. One of our candidate systems exhibits outer eclipsing events as well, the locations of which are in good agreement with the ETV solution. We also report another certain triply eclipsing triple system that, however, is lacking a reliable ETV solution due to the very short time range of the data, and four new blended systems (composite light curves of two EBs each), where we cannot decide whether the components are gravitationally bounded or not. Amongst these blended systems, we identify the longest period and highest eccentricity EB in the entire CoRoT sample.

  10. Feedback Control of Two-Component Regulatory Systems.

    Science.gov (United States)

    Groisman, Eduardo A

    2016-09-08

    Two-component systems are a dominant form of bacterial signal transduction. The prototypical two-component system consists of a sensor that responds to a specific input(s) by modifying the output of a cognate regulator. Because the output of a two-component system is the amount of phosphorylated regulator, feedback mechanisms may alter the amount of regulator, and/or modify the ability of a sensor or other proteins to alter the phosphorylation state of the regulator. Two-component systems may display intrinsic feedback whereby the amount of phosphorylated regulator changes under constant inducing conditions and without the participation of additional proteins. Feedback control allows a two-component system to achieve particular steady-state levels, to reach a given steady state with distinct dynamics, to express coregulated genes in a given order, and to activate a regulator to different extents, depending on the signal acting on the sensor.

  11. The global regulatory system Csr senses glucose through the phosphoenolpyruvate: carbohydrate phosphotransferase system.

    Science.gov (United States)

    Pérez-Morales, Deyanira; Bustamante, Víctor H

    2016-02-01

    A novel connection between two regulatory systems controlling crucial biological processes in bacteria, the carbon storage regulator (Csr) system and the glucose-specific phosphotransferase system (PTS), is reported by Leng et al. in this issue. This involves the interaction of unphosphorylated EIIA(Glc), a component of the glucose-specific PTS, with the CsrD protein, which accelerates the decay of the CsrB and CsrC small RNAs via RNase E in Escherichia coli. As unphosphorylated EIIA(G) (lc) is generated in the presence of glucose, the PTS thus acts as a sensor of glucose for the Csr system. Interestingly, another pathway can operate for communication between the Csr system and the glucose-specific PTS. The absence of glucose generates phosphorylated EIIA(Glc) , which activates the enzyme adenylate cyclase to produce cyclic adenosine monophosphate (cAMP) that, in turn, binds to the regulator cAMP receptor protein (CRP). Leng et al. show that the complex cAMP-CRP modestly reduces CsrB decay independently of CsrD. On the other hand, a previous study indicates that the complex cAMP-CRP positively regulates the transcription of CsrB and CsrC in Salmonella enterica. Therefore, EIIA(G) (lc) could work as a molecular switch that regulates the activity of the Csr system, in response to its phosphorylation state determined by the presence or absence of glucose, in order to control gene expression.

  12. Regulatory islanding parameters in battery based solar PV for electricity system resiliency

    OpenAIRE

    Alsayyed, Nidal; Zhu, Weihang

    2016-01-01

    Distributed battery based solar power photovoltaic (PV) systems have the potential to supply electricity during grid outages resulting from extreme weather or other emergency situations. As such, distributed PV can significantly increase the resiliency of the electricity system. In order to take advantage of this capability, however, the PV systems must be designed with regulatory parameters in mind and combined with other technologies, such as smart energy storage and auxiliary generation. S...

  13. Building Assurance of Regulatory Compliance in Dynamic Service Oriented Systems

    Directory of Open Access Journals (Sweden)

    Ivana Sabatova

    2015-04-01

    Full Text Available A system or a particular service is considered to be reliable and credible if we are able to prove its compliance with the defined requirements in a trusted way. In the beginning of this paper the concept and the methodology of continual compliance management in SOA systems introduced by MASTER FP7 research project are described. Then the author introduces her work on compliance assurance verification based on the case study in Hospital San Raffaele in Milan, Italy (HSR.The methodology and its technical realization are explained by examples of Key Assurance Indicator (KAI and Key Security Indicators (KSIs designed for two case studies based on the pilot implementation in the HSR. Author’s original contribution is the definition of compliance patterns in the form of assessment policies for the selected use cases.

  14. Financial Regulatory Reform: Systemic Risk and the Federal Reserve

    Science.gov (United States)

    2010-05-26

    either ineffective or a cure that is worse than the disease. Instead, the Fed has argued it can use expansionary monetary policy to ensure a smooth...shadow banking system, which is largely free of federal regulation for safety and soundness. The Fed’s monetary policy mandate is broad enough to...allow it to use monetary policy to prick asset bubbles, although it has not chosen to do so in the past. Neither the Fed nor other existing

  15. Organic Coasts? Regulatory Challenges of Certifying Integrated Shrimp-Mangrove Production Systems in Vietnam

    Science.gov (United States)

    Ha, Tran Thi Thu; Bush, Simon R.; Mol, Arthur P. J.; van Dijk, Han

    2012-01-01

    The Vietnamese government aims to expand the scale of Naturland certified organic production in integrated shrimp-mangrove farming systems across the coast of Ca Mau province by 2015. In doing so the division between public and private regulation has become blurred. We analyze the government's goal by examining the regulatory challenges of using…

  16. Construction of an integrated gene regulatory network link to stress-related immune system in cattle.

    Science.gov (United States)

    Behdani, Elham; Bakhtiarizadeh, Mohammad Reza

    2017-08-20

    The immune system is an important biological system that is negatively impacted by stress. This study constructed an integrated regulatory network to enhance our understanding of the regulatory gene network used in the stress-related immune system. Module inference was used to construct modules of co-expressed genes with bovine leukocyte RNA-Seq data. Transcription factors (TFs) were then assigned to these modules using Lemon-Tree algorithms. In addition, the TFs assigned to each module were confirmed using the promoter analysis and protein-protein interactions data. Therefore, our integrated method identified three TFs which include one TF that is previously known to be involved in immune response (MYBL2) and two TFs (E2F8 and FOXS1) that had not been recognized previously and were identified for the first time in this study as novel regulatory candidates in immune response. This study provides valuable insights on the regulatory programs of genes involved in the stress-related immune system.

  17. Regulatory compliance requirements for an open source electronic image trial management system.

    Science.gov (United States)

    Rhodes, Colin; Moore, Steve; Clark, Ken; Maffitt, David; Perry, John; Handzel, Toni; Prior, Fred

    2010-01-01

    There is a global need for software to manage imaging based clinical trials to speed basic research and drug development. Such a system must comply with regulatory requirements. The U.S. Food and Drug Administration (FDA) has regulations regarding software development process controls and data provenance tracking. A key unanswered problem is the identification of which data changes are significant given a workflow model for image trial management. We report on the results of our study of provenance tracking requirements and define an architecture and software development process that meets U.S. regulatory requirements using open source software components.

  18. Hierarchical distance-based fuzzy approach to evaluate urban water supply systems in a semi-arid region.

    Science.gov (United States)

    Yekta, Tahereh Sadeghi; Khazaei, Mohammad; Nabizadeh, Ramin; Mahvi, Amir Hossein; Nasseri, Simin; Yari, Ahmad Reza

    2015-01-01

    Hierarchical distance-based fuzzy multi-criteria group decision making was served as a tool to evaluate the drinking water supply systems of Qom, a semi-arid city located in central part of Iran. A list of aspects consisting of 6 criteria and 35 sub-criteria were evaluated based on a linguistic term set by five decision-makers. Four water supply alternatives including "Public desalinated distribution system", "PET Bottled Drinking Water", "Private desalinated water suppliers" and "Household desalinated water units" were assessed based on criteria and sub-criteria. Data were aggregated and normalized to apply Performance Ratings of Alternatives. Also, the Performance Ratings of Alternatives were aggregated again to achieve the Aggregate Performance Ratings. The weighted distances from ideal solution and anti-ideal solution were calculated after secondary normalization. The proximity of each alternative to the ideal solution was determined as the final step. The alternatives were ranked based on the magnitude of ideal solutions. Results showed that "Public desalinated distribution system" was the most appropriate alternative to supply the drinking needs of Qom population. Also, "PET Bottled Drinking Water" was the second acceptable option. A novel classification of alternatives to satisfy the drinking water requirements was proposed which is applicable for the other cities located in semi-arid regions of Iran. The health issues were considered as independent criterion, distinct from the environmental issues. The constraints of high-tech alternatives were also considered regarding to the level of dependency on overseas.

  19. Biological data warehousing system for identifying transcriptional regulatory sites from gene expressions of microarray data.

    Science.gov (United States)

    Tsou, Ann-Ping; Sun, Yi-Ming; Liu, Chia-Lin; Huang, Hsien-Da; Horng, Jorng-Tzong; Tsai, Meng-Feng; Liu, Baw-Juine

    2006-07-01

    Identification of transcriptional regulatory sites plays an important role in the investigation of gene regulation. For this propose, we designed and implemented a data warehouse to integrate multiple heterogeneous biological data sources with data types such as text-file, XML, image, MySQL database model, and Oracle database model. The utility of the biological data warehouse in predicting transcriptional regulatory sites of coregulated genes was explored using a synexpression group derived from a microarray study. Both of the binding sites of known transcription factors and predicted over-represented (OR) oligonucleotides were demonstrated for the gene group. The potential biological roles of both known nucleotides and one OR nucleotide were demonstrated using bioassays. Therefore, the results from the wet-lab experiments reinforce the power and utility of the data warehouse as an approach to the genome-wide search for important transcription regulatory elements that are the key to many complex biological systems.

  20. Distributed PACS using distributed file system with hierarchical meta data servers.

    Science.gov (United States)

    Hiroyasu, Tomoyuki; Minamitani, Yoshiyuki; Miki, Mitsunori; Yokouchi, Hisatake; Yoshimi, Masato

    2012-01-01

    In this research, we propose a new distributed PACS (Picture Archiving and Communication Systems) which is available to integrate several PACSs that exist in each medical institution. The conventional PACS controls DICOM file into one data-base. On the other hand, in the proposed system, DICOM file is separated into meta data and image data and those are stored individually. Using this mechanism, since file is not always accessed the entire data, some operations such as finding files, changing titles, and so on can be performed in high-speed. At the same time, as distributed file system is utilized, accessing image files can also achieve high-speed access and high fault tolerant. The introduced system has a more significant point. That is the simplicity to integrate several PACSs. In the proposed system, only the meta data servers are integrated and integrated system can be constructed. This system also has the scalability of file access with along to the number of file numbers and file sizes. On the other hand, because meta-data server is integrated, the meta data server is the weakness of this system. To solve this defect, hieratical meta data servers are introduced. Because of this mechanism, not only fault--tolerant ability is increased but scalability of file access is also increased. To discuss the proposed system, the prototype system using Gfarm was implemented. For evaluating the implemented system, file search operating time of Gfarm and NFS were compared.

  1. 3级递阶舰艇作战系统控制结构%Kind of three-level hierarchical control architecture for shipborne combat system

    Institute of Scientific and Technical Information of China (English)

    吕遐东; 姚腾钢; 黄心汉

    2011-01-01

    介绍了一种舰艇作战系统3级递阶集成控制结构,该结构自上而下包括系统组织级、资源协调级和设备执行级,形成了“信号-数据-知识”的3层信息递阶关系和“伺服-协调-组织”的3层控制递阶关系;同时融合了基于领域专家设计经验和指挥员作战知识的学习控制,结合“人在回路”设计实现人机智能的统一.针对作战系统分级递阶控制的信息度量、资源调度的离散事件建模、基于知识/规则的系统控制等基础理论问题进行了分析探讨.%A kind of three-level hierarchical control architecture for shipborne combat system Was introduced. The architecture consisted of three control levels from top to bottom including system-organizing layer, resource-coordinating layer and device-executing layer. It induced "signal-data-knowledge" hierarchical information model and "servo-coordinate-organize" hierarchical control model. The architecture also fused learning control based on expert experience and commander knowledge to integrate with human and machine intelligence by "man-in-loop" design. Considering hierarchical information evaluation, discrete event modeling for resource scheduling and knowledge-based system control, these theoretical fundamental issues had been discussed to combat system's hierarchical control application.

  2. Identification of multivariable nonlinear systems in the presence of colored noises using iterative hierarchical least squares algorithm.

    Science.gov (United States)

    Jafari, Masoumeh; Salimifard, Maryam; Dehghani, Maryam

    2014-07-01

    This paper presents an efficient method for identification of nonlinear Multi-Input Multi-Output (MIMO) systems in the presence of colored noises. The method studies the multivariable nonlinear Hammerstein and Wiener models, in which, the nonlinear memory-less block is approximated based on arbitrary vector-based basis functions. The linear time-invariant (LTI) block is modeled by an autoregressive moving average with exogenous (ARMAX) model which can effectively describe the moving average noises as well as the autoregressive and the exogenous dynamics. According to the multivariable nature of the system, a pseudo-linear-in-the-parameter model is obtained which includes two different kinds of unknown parameters, a vector and a matrix. Therefore, the standard least squares algorithm cannot be applied directly. To overcome this problem, a Hierarchical Least Squares Iterative (HLSI) algorithm is used to simultaneously estimate the vector and the matrix of unknown parameters as well as the noises. The efficiency of the proposed identification approaches are investigated through three nonlinear MIMO case studies.

  3. Information theory in systems biology. Part I: Gene regulatory and metabolic networks.

    Science.gov (United States)

    Mousavian, Zaynab; Kavousi, Kaveh; Masoudi-Nejad, Ali

    2016-03-01

    "A Mathematical Theory of Communication", was published in 1948 by Claude Shannon to establish a framework that is now known as information theory. In recent decades, information theory has gained much attention in the area of systems biology. The aim of this paper is to provide a systematic review of those contributions that have applied information theory in inferring or understanding of biological systems. Based on the type of system components and the interactions between them, we classify the biological systems into 4 main classes: gene regulatory, metabolic, protein-protein interaction and signaling networks. In the first part of this review, we attempt to introduce most of the existing studies on two types of biological networks, including gene regulatory and metabolic networks, which are founded on the concepts of information theory. Copyright © 2015 Elsevier Ltd. All rights reserved.

  4. 17 CFR 249.821 - Form PILOT, information required of self-regulatory organizations operating pilot trading systems...

    Science.gov (United States)

    2010-04-01

    ... required of self-regulatory organizations operating pilot trading systems pursuant to § 240.19b-5 of this... Associations § 249.821 Form PILOT, information required of self-regulatory organizations operating pilot trading systems pursuant to § 240.19b-5 of this chapter. This form shall be used by all...

  5. Complexity, Robustness, and Multistability in Network Systems with Switching Topologies: A Hierarchical Hybrid Control Approach

    Science.gov (United States)

    2015-05-22

    Control Problem for UAV For- mations . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3 2.2. Output Feedback Adaptive...10 2.6. On the Equivalence Between Dissipativity and Optimality of Discontinuous Nonlinear Regulators for Filippov Dynamical Systems...dynamical 1 systems controlled by optimal and inverse optimal discontinuous regulators . These results were used to design protocol controllers for group

  6. Integrated systems analysis of sow replacement rates in a hierarchical swine breeding structure.

    Science.gov (United States)

    Faust, M A; Robison, O W; Tess, M W

    1993-11-01

    Sow replacement rates in a three-tiered breeding structure were investigated for a 10-yr planning horizon using a stochastic life-cycle swine production model. Market hogs were produced in a three-breed static crossing program and marketed on a liveweight basis. Growth and reproductive traits of individual pigs were simulated using genetic, environmental, and economic parameters. Sows were culled after a maximum of 1, 5, or 10 parities. Systems were defined by maximum sow age at culling and included combinations of 1- and 5-parity nucleus and 1-, 5-, and 10-parity multiplier and commercial tiers. Economic response to index selection was considerable for all culling alternatives with yearly increases in system profits ranging from $1.06 to 1.44 for each commercial hog marketed. When sows were culled after one parity in nucleus, multiplier, and commercial tiers, respectively (1,1,1), annual changes in net returns and all cost measures were 40 to 50% larger than responses in systems with lower sow replacement rates. Based on 10-yr averages for net returns, systems with low multiplier- and commercial-level replacement rates were more profitable than systems with higher replacement rates. The most profitable system (5,10,10) differed from the least profitable system (1,1,1) by more than $10 per pig, but when the (1,1,1) system was excluded, the range was only $3 per pig. The system with lowest replacement rates supported 3,388 more multiplier and 34,151 more commercial sows from a 750-sow nucleus level than the (1,1,1) system. Output from the two extremes differed by > 664,000 commercial market hogs sold.(ABSTRACT TRUNCATED AT 250 WORDS)

  7. Distributed Solar PV for Electricity System Resiliency: Policy and Regulatory Considerations (Brochure)

    Energy Technology Data Exchange (ETDEWEB)

    2014-11-01

    Distributed Solar PV systems have the potential of increasing the grid's resiliency to unforeseen events, such as extreme weather events and attacks. This paper presents the role that distributed PV can play in electric grid resiliency, introduces basic system design requirements and options, and discusses the regulatory and policy options for supporting the use of distributed PV for the purpose of increased electricity resiliency.

  8. Updating of the hierarchical rock mass rating (HRMR) system and a new subsystem developed for weathered granite formations

    Institute of Scientific and Technical Information of China (English)

    Miranda Tiago; e Sousa L. Ribeiro; Tinoco Joaquim

    2014-01-01

    The RMR system is still very much applied in rock mechanics engineering context. It is based on the eval-uation of six weights to obtain a final rating. To obtain the final rating a considerable amount of informa-tion is needed concerning the rock mass which can be difficult to obtain in some projects or project stages at least with accuracy. In 2007 an alternative classification scheme based on the RMR, the Hierarchical Rock Mass Rating (HRMR) was presented. The main feature of this system was the adaptation to the level of knowledge existent about the rock mass to obtain the classification of the rock mass since it followed a decision tree approach. However, the HRMR was only valid for hard rock granites with low fracturing degrees. In this work, the database was enlarged with approximately 40%more cases considering other types of granite rock masses including weathered granites and based on this increased database the sys-tem was updated. Granite formations existent in the north of Portugal including Porto city are predom-inantly granites. Some years ago a light rail infrastructure was built in the city of Porto and surrounding municipalities which involved considerable challenges due to the high heterogeneity levels of the granite formations and the difficulties involved in their geomechanical characterization. In this work it is intended to provide also a contribution to improve the characterization of these formations with special emphasis to the weathered horizons. A specific subsystem applicable to the weathered formations was developed. The results of the validation of these systems are presented and show acceptable perfor-mances in identifying the correct class using less information than with the RMR system.

  9. Hierarchical Downlink Resource Management Framework for OFDMA based WiMAX Systems

    DEFF Research Database (Denmark)

    Wang, Hua; Iversen, Villy Bæk

    2008-01-01

    resource management framework for OFDMA based WiMAX systems. Our framework consists of a dynamic resource allocation (DRA) module and a connection admission control (CAC) module. DRA emphasizes on how to share the limited radio resources in term of subchannels and time slots among WiMAX subscribers...... belonging to different service classes with the objective of increasing the spectral efficiency while satisfying the diverse QoS requirements in each service class. CAC highlights how to limit the number of ongoing connections preventing the system capacity from being overused. Through system...

  10. Continued Kinematic and Photometric Investigations of Hierarchical Solar-type Multiple Star Systems

    Science.gov (United States)

    Roberts, Lewis C., Jr.; Tokovinin, Andrei; Mason, Brian D.; Marinan, Anne D.

    2017-03-01

    We observed 15 of the solar-type binaries within 67 pc of the Sun previously observed by the Robo-AO system in the visible, with the PHARO near-infrared camera and the PALM-3000 adaptive optics system on the 5 m Hale telescope. The physical status of the binaries is confirmed through common proper motion and detection of orbital motion. In the process, we detected a new candidate companion to HIP 95309. We also resolved the primary of HIP 110626 into a close binary, making that system a triple. These detections increase the completeness of the multiplicity survey of the solar-type stars within 67 pc of the Sun. Combining our observations of HIP 103455 with archival astrometric measurements and RV measurements, we are able to compute the first orbit of HIP 103455, showing that the binary has a 68 year period. We place the components on a color–magnitude diagram and discuss each multiple system individually.

  11. A combinatorial regulatory signature controls terminal differentiation of the dopaminergic nervous system in C. elegans.

    Science.gov (United States)

    Doitsidou, Maria; Flames, Nuria; Topalidou, Irini; Abe, Namiko; Felton, Terry; Remesal, Laura; Popovitchenko, Tatiana; Mann, Richard; Chalfie, Martin; Hobert, Oliver

    2013-06-15

    Terminal differentiation programs in the nervous system are encoded by cis-regulatory elements that control the expression of terminal features of individual neuron types. We decoded the regulatory information that controls the expression of five enzymes and transporters that define the terminal identity of all eight dopaminergic neurons in the nervous system of the Caenorhabditis elegans hermaphrodite. We show that the tightly coordinated, robust expression of these dopaminergic enzymes and transporters ("dopamine pathway") is ensured through a combinatorial cis-regulatory signature that is shared by all dopamine pathway genes. This signature is composed of an Ets domain-binding site, recognized by the previously described AST-1 Ets domain factor, and two distinct types of homeodomain-binding sites that act in a partially redundant manner. Through genetic screens, we identified the sole C. elegans Distalless/Dlx ortholog, ceh-43, as a factor that acts through one of the homeodomain sites to control both induction and maintenance of terminal dopaminergic fate. The second type of homeodomain site is a Pbx-type site, which is recognized in a partially redundant and neuron subtype-specific manner by two Pbx factors, ceh-20 and ceh-40, revealing novel roles of Pbx factors in the context of terminal neuron differentiation. Taken together, we revealed a specific regulatory signature and cognate, terminal selector-type transcription factors that define the entire dopaminergic nervous system of an animal. Dopaminergic neurons in the mouse olfactory bulb express a similar combinatorial transcription factor collective of Ets/Dlx/Pbx factors, suggesting deep phylogenetic conservation of dopaminergic regulatory programs.

  12. Hierarchical Fault Diagnosis for a Hybrid System Based on a Multidomain Model

    Directory of Open Access Journals (Sweden)

    Jiming Ma

    2015-01-01

    Full Text Available The diagnosis procedure is performed by integrating three steps: multidomain modeling, event identification, and failure event classification. Multidomain model can describe the normal and fault behaviors of hybrid systems efficiently and can meet the diagnosis requirements of hybrid systems. Then the multidomain model is used to simulate and obtain responses under different failure events; the responses are further utilized as a priori information when training the event identification library. Finally, a brushless DC motor is selected as the study case. The experimental result indicates that the proposed method could identify the known and unknown failure events of the studied system. In particular, for a system with less response information under a failure event, the accuracy of diagnosis seems to be higher. The presented method integrates the advantages of current quantitative and qualitative diagnostic procedures and can distinguish between failures caused by parametric and abrupt structure faults. Another advantage of our method is that it can remember unknown failure types and automatically extend the adaptive resonance theory neural network library, which is extremely useful for complex hybrid systems.

  13. Remarks on Hierarchic Control for a Linearized Micropolar Fluids System in Moving Domains

    Energy Technology Data Exchange (ETDEWEB)

    Jesus, Isaías Pereira de, E-mail: isaias@ufpi.edu.br [Universidade Federal do Piauí, Dpto. Matemática (Brazil)

    2015-12-15

    We study a Stackelberg strategy subject to the evolutionary linearized micropolar fluids equations in domains with moving boundaries, considering a Nash multi-objective equilibrium (non necessarily cooperative) for the “follower players” (as is called in the economy field) and an optimal problem for the leader player with approximate controllability objective. We will obtain the following main results: the existence and uniqueness of Nash equilibrium and its characterization, the approximate controllability of the linearized micropolar system with respect to the leader control and the existence and uniqueness of the Stackelberg–Nash problem, where the optimality system for the leader is given.

  14. Large eccentricity, low mutual inclination: the three-dimensional architecture of a hierarchical system of giant planets

    CERN Document Server

    Dawson, Rebekah I; Fabrycky, Daniel C; Foreman-Mackey, Daniel; Murray-Clay, Ruth A; Bucchave, Lars A; Cargile, Phillip A; Clubb, Kelsey I; Fulton, Benjamin J; Hebb, Leslie; Howard, Andrew W; Huber, Daniel; Shporer, Avi; Valenti, Jeff A

    2014-01-01

    We establish the three-dimensional architecture of the KOI-1474 system to be eccentric yet with a low mutual inclination. KOI-1474b is a warm Jupiter at semi-major axis a = 0.370 +0.007/-0.006 AU with a large eccentricity (e=0.85 +0.08/-0.07) measured via the "photoeccentric effect." It exhibits transit timing variations induced by the non-transiting KOI-1474c, which we uniquely constrain to be a moderately eccentric (e=0.184 +/- 0.002), hierarchically-separated (a=1.68 +/- 0.03 AU) giant planet (7.3 +/- 0.4 MJup). We combine sixteen quarters of Kepler photometry, radial-velocity (RV) measurements from the HIgh Resolution Echelle Spectrometer (HIRES) on Keck, and improved stellar parameters that we derive from spectroscopy and asteroseismology. From the RVs, we measure the mass of inner planet to be 2.6 +/- 0.3 MJup and confirm its photometrically-measured eccentricity, refining the value to e=0.83 +/- 0.01. The RV acceleration is consistent with the properties of the outer planet derived from TTVs. We find t...

  15. In₂S₃/carbon nanofibers/Au ternary synergetic system: hierarchical assembly and enhanced visible-light photocatalytic activity.

    Science.gov (United States)

    Zhang, Xin; Shao, Changlu; Li, Xinghua; Lu, Na; Wang, Kexin; Miao, Fujun; Liu, Yichun

    2015-01-01

    In this paper, carbon nanofibers (CNFs) were successfully synthesized by electrospinning technique. Next, Au nanoparticles (NPs) were assembled on the electrospun CNFs through in situ reduction method. By using the obtained Au NPs modified CNFs (CNFs/Au) as hard template, the In2S3/CNFs/Au composites were synthesized through hydrothermal technique. The results showed that the super long one-dimensional (1D) CNFs (about 306 nm in average diameter) were well connected to form a nanofibrous network; and, the Au NPs with 18 nm in average diameter and In2S3 nanosheets with 5-10nm in thickness were uniformly grown onto the surface of CNFs. Photocatalytic studies revealed that the In2S3/CNFs/Au composites exhibited highest visible-light photocatalytic activities for the degradation of Rhodamine B (RB) compared with pure In2S3 and In2S3/CNFs. The enhanced photocatalytic activity might arise from the high separation efficiency of photogenerated electron-hole pairs based on the positive synergetic effect between In2S3, CNFs and Au components in this ternary photocatalytic system. Meanwhile, the In2S3/CNFs/Au composites with hierarchical structure possess a strong adsorption ability towards organic dyes, which also contributed to the enhancement of photocatalytic activity. Moreover, the In2S3/CNFs/Au composites could be recycled easily by sedimentation due to their nanofibrous network structure.

  16. Blocking Probability Based Hierarchical Storage Design in VoD Systems

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    In this paper, we discuss the relationship between the blocking probability and the configuration of storage hierarchy in a Video on Demand (VoD) server using the queueing model we propose. With this model , the optimal configuration of the storage system can be obtained.

  17. Adaptive Radio Resource Allocation in Hierarchical QoS Scheduling for IEEE 802.16 Systems

    DEFF Research Database (Denmark)

    Wang, Hua; Dittmann, Lars

    2007-01-01

    Future mobile communication systems such as IEEE 802.16 are expected to deliver a variety of multimedia services with diverse QoS requirements. To guarantee the QoS provision, appropriate scheduler architecture and scheduling algorithms have to be carefully designed. In this paper, we propose...

  18. Functional annotation of hierarchical modularity.

    Directory of Open Access Journals (Sweden)

    Kanchana Padmanabhan

    Full Text Available In biological networks of molecular interactions in a cell, network motifs that are biologically relevant are also functionally coherent, or form functional modules. These functionally coherent modules combine in a hierarchical manner into larger, less cohesive subsystems, thus revealing one of the essential design principles of system-level cellular organization and function-hierarchical modularity. Arguably, hierarchical modularity has not been explicitly taken into consideration by most, if not all, functional annotation systems. As a result, the existing methods would often fail to assign a statistically significant functional coherence score to biologically relevant molecular machines. We developed a methodology for hierarchical functional annotation. Given the hierarchical taxonomy of functional concepts (e.g., Gene Ontology and the association of individual genes or proteins with these concepts (e.g., GO terms, our method will assign a Hierarchical Modularity Score (HMS to each node in the hierarchy of functional modules; the HMS score and its p-value measure functional coherence of each module in the hierarchy. While existing methods annotate each module with a set of "enriched" functional terms in a bag of genes, our complementary method provides the hierarchical functional annotation of the modules and their hierarchically organized components. A hierarchical organization of functional modules often comes as a bi-product of cluster analysis of gene expression data or protein interaction data. Otherwise, our method will automatically build such a hierarchy by directly incorporating the functional taxonomy information into the hierarchy search process and by allowing multi-functional genes to be part of more than one component in the hierarchy. In addition, its underlying HMS scoring metric ensures that functional specificity of the terms across different levels of the hierarchical taxonomy is properly treated. We have evaluated our

  19. The effect of reward system on job satisfaction in an organizational chart of four hierarchical levels: a qualitative study

    Directory of Open Access Journals (Sweden)

    Ekaterini Galanou

    2011-01-01

    Full Text Available Rewards systems are one of the most significant issues of the human resource management. Throughout the literature, it is obvious that theorists and academics, as well as practitioners and managers emphasize the important factor of rewards. Additionally, job satisfaction is another crucial term within the same body of literature. Job satisfaction is likely to provide employees of all levels with feelings of fulfillment, achievement and even pleasure for their job. Thus, such feelings can make people more productive, creative and therefore more profitable for the organization. Furthermore, feelings of job satisfaction can strengthen the commitment and loyalty of employees with the organization, which is very necessary in present times where all firms are looking for competitive advantage and especially through their people. The objective of this study is to examine the correlation of the rewards systems and job satisfaction, based on a qualitative research. An attempt is also made to identify differences in rewards systems and the extent to which these differences influence job satisfaction among people in different organizational level.Qualitative evidence was found for the aspects of satisfaction in accordance with different kinds of rewards, focusing on the four hierarchical levels of an organization. One of the challenges of the study and its strength is the transitional stage that the organization is in, and the sub-cultures that have been created.Future research should measure crucial factors as behaviors, attitudes, performance and how these results can be linked to contextual elements and to employment performance.This study contributes to increase job satisfaction awareness, which is important for organizational development.

  20. The effect of reward system on job satisfaction in an organizational chart of four hierarchical levels: a qualitative study

    Directory of Open Access Journals (Sweden)

    Ekaterini Galanou

    2011-01-01

    Full Text Available Rewards systems are one of the most significant issues of the human resource management. Throughout the literature, it is obvious that theorists and academics, as well as practitioners and managers emphasize the important factor of rewards. Additionally, job satisfaction is another crucial term within the same body of literature. Job satisfaction is likely to provide employees of all levels with feelings of fulfillment, achievement and even pleasure for their job. Thus, such feelings can make people more productive, creative and therefore more profitable for the organization. Furthermore, feelings of job satisfaction can strengthen the commitment and loyalty of employees with the organization, which is very necessary in present times where all firms are looking for competitive advantage and especially through their people. The objective of this study is to examine the correlation of the rewards systems and job satisfaction, based on a qualitative research. An attempt is also made to identify differences in rewards systems and the extent to which these differences influence job satisfaction among people in different organizational level.Qualitative evidence was found for the aspects of satisfaction in accordance with different kinds of rewards, focusing on the four hierarchical levels of an organization. One of the challenges of the study and its strength is the transitional stage that the organization is in, and the sub-cultures that have been created.Future research should measure crucial factors as behaviors, attitudes, performance and how these results can be linked to contextual elements and to employment performance.This study contributes to increase  job satisfaction awareness, which is important for organizational development .

  1. Regulation gel formation, hierarchical structures and surface wettability via isomeride effect in supramolecular organogel system.

    Science.gov (United States)

    Cao, Xinhua; Ding, Qianqian; Gao, Aiping; Lv, Haiting; Zhao, Na; Liu, Dan

    2017-05-15

    A new serial of gelators with two cholesteryl groups based on o-phenylenediamine, m-phenylenediamine and p-phenylenediamine were synthesized, and their organogelation ability was evaluated. We found that G-o could form gels in DMF, DMSO and ethyl acetate, G-m and G-p could only gel DMF and 1,4-dioxane. The organogels were thoroughly characterized using various microscopic techniques including field-emission scanning electron microscopy (FESEM), X-ray diffraction (XRD), UV-Vis spectrum, FT-IR spectrum and contact angle. The gelation ability, morphology, self-assembly mode and materials surface wettability all could be tuned via isomeride effect in self-assembly system. Interestingly, superhydrophobic surface was formed via the self-assembly of compound G-p in 1,4-dioxane and exhibited very high adsorption capacity for water. This gel system provided new method for modulation self-assembly process in supramolecular field.

  2. On the hierarchical optimal control of a chain of distributed systems

    OpenAIRE

    Befekadu, Getachew K.; Pasiliao, Eduardo L.

    2015-01-01

    In this paper, we consider a chain of distributed systems governed by a degenerate parabolic equation, which satisfies a weak H\\"{o}rmander type condition, with a control distributed over an open subdomain. In particular, we consider two objectives that we would like to accomplish. The first one being of a controllability type that consists of guaranteeing the terminal state to reach a target set starting from an initial condition; while the second one is keeping the state trajectory of the o...

  3. Scalable Hierarchical Network Management System for Displaying Network Information in Three Dimensions

    Science.gov (United States)

    George, Jude (Inventor); Schlecht, Leslie (Inventor); McCabe, James D. (Inventor); LeKashman, John Jr. (Inventor)

    1998-01-01

    A network management system has SNMP agents distributed at one or more sites, an input output module at each site, and a server module located at a selected site for communicating with input output modules, each of which is configured for both SNMP and HNMP communications. The server module is configured exclusively for HNMP communications, and it communicates with each input output module according to the HNMP. Non-iconified, informationally complete views are provided of network elements to aid in network management.

  4. Hierarchical Evidence Accumulation in the Pseiki System and Experiments in Model-Driven Mobile Robot Navigation

    OpenAIRE

    2013-01-01

    In this paper, we will review the process of evidence accumulation in the PSEIKI system for expectation-driven interpretation of images of 3-D scenes. Expectations are presented to PSEIKI as a geometrical hierarchy of abstractions. PSEIKI's job is then to construct abstraction hierarchies in the perceived image taking cues from the abstraction hierarchies in the expectations. The Dempster-Shafer formalism is used for associating belief values with the different possible labels for the constru...

  5. Solar PV Project Financing: Regulatory and Legislative Challenges for Third-Party PPA System Owners

    Energy Technology Data Exchange (ETDEWEB)

    Kollins, K.; Speer, B.; Cory, K.

    2009-11-01

    Residential and commercial end users of electricity who want to generate electricity using on-site solar photovoltaic (PV) systems face challenging initial and O&M costs. The third-party ownership power purchase agreement (PPA) finance model addresses these and other challenges. It allows developers to build and own PV systems on customers? properties and sell power back to customers. However, third-party electricity sales commonly face five regulatory challenges. The first three challenges involve legislative or regulatory definitions of electric utilities, power generation equipment, and providers of electric services. These definitions may compel third-party owners of solar PV systems to comply with regulations that may be cost prohibitive. Third-party owners face an additional challenge if they may not net meter, a practice that provides significant financial incentive to owning solar PV systems. Finally, municipalities and cooperatives worry about the regulatory implications of allowing an entity to sell electricity within their service territories. This paper summarizes these challenges, when they occur, and how they have been addressed in five states. This paper also presents alternative to the third-party ownership PPA finance model, including solar leases, contractual intermediaries, standardized contract language, federal investment tax credits, clean renewable energy bonds, and waived monopoly powers.

  6. Dynamic control of the complement system by modulated expression of regulatory proteins.

    Science.gov (United States)

    Thurman, Joshua M; Renner, Brandon

    2011-01-01

    The complement system serves many biological functions, including the eradication of invasive pathogens and the removal of damaged cells and immune-complexes. Uncontrolled complement activation causes injury to host cells, however, so adequate regulation of the system is essential. Control of the complement system is maintained by a group of cell surface and circulating proteins referred to as complement regulatory proteins. The expression of the cell surface complement regulatory proteins varies from tissue to tissue. Furthermore, specific cell types can upregulate or downregulate the expression of these proteins in response to a variety of signals or insults. Altered regulation of the complement regulatory proteins can have important effects on local complement activation. In some circumstances this can be beneficial, such as in the setting of certain infections. In other circumstances, however, this can be a cause of complement-mediated injury of the tissue. A full understanding of the mechanisms by which the complement system is modulated at the local level can have important implications for how we diagnose and treat a wide range of inflammatory diseases.

  7. Bioinformatics analysis of two-component regulatory systems in Staphylococcus epidermidis

    Institute of Scientific and Technical Information of China (English)

    QIN Zhiqiang; ZHONG Yang; ZHANG Jian; HE Youyu; WU Yang; JIANG Juan; CHEN Jiemin; LUO Xiaomin; QU Di

    2004-01-01

    Sixteen pairs of two-component regulatory systems are identified in the genome of Staphylococcus epidermidis ATCC12228 strain, which is newly sequenced by our laboratory for Medical Molecular Virology and Chinese National Human Genome Center at Shanghai, by using bioinformatics analysis. Comparative analysis of the twocomponent regulatory systems in S. epidermidis and that of S.aureus and Bacillus subtilis shows that these systems may regulate some important biological functions, e.g. growth,biofilm formation, and expression of virulence factors in S.epidermidis. Two conserved domains, i.e. HATPase_c and REC domains, are found in all 16 pairs of two-component proteins.Homologous modelling analysis indicates that there are 4similar HATPase_c domain structures of histidine kinases and 13 similar REC domain structures of response regulators,and there is one AMP-PNP binding pocket in the HATPase_c domain and three active aspartate residues in the REC domain. Preliminary experiment reveals that the bioinformatics analysis of the conserved domain structures in the two-component regulatory systems in S. epidermidis may provide useful information for discovery of potential drug target.

  8. Structured peer-to-peer systems fundamentals of hierarchical organization, routing, scaling, and security

    CERN Document Server

    Korzun, Dmitry

    2012-01-01

    The field of structured P2P systems has seen fast growth upon the introduction of Distributed Hash Tables (DHTs) in the early 2000s. The first proposals, including Chord, Pastry, Tapestry, were gradually improved to cope with scalability, locality and security issues. By utilizing the processing and bandwidth resources  of end users, the P2P approach enables high performance of data distribution which is hard to achieve with traditional client-server architectures. The P2P computing community is also being actively utilized for software updates to the Internet, P2PSIP VoIP, video-on-demand, an

  9. Enhancing traffic performance in hierarchical DHT system by exploiting network proximity

    Science.gov (United States)

    Zhong, Haifeng; Wu, Wei; Pei, Canhao; Zhang, Chengfeng

    2009-08-01

    Nowadays P2P systems have become increasingly popular for object distribution and file sharing, and the majority of Internet traffic is generated by P2P file sharing applications. However, those applications usually ignored the underlying proximity of physical nodes and regionalization of file accessing. As a result, they generate a large amount of unnecessary interdomain transit traffic and increase response latency. In this paper, we proposed a new traffic control approach to enhance p2p traffic locality and reduce the cross-group transfer. Using analysis, we show that the method substantially improves node transfer efficiency and significantly reduces file access latency compared with native P2P applications.

  10. The Design and Implementation of a Hierarchical Interface for the Multi-Lingual Database System.

    Science.gov (United States)

    1985-06-01

    to learn. The biggest advantage of using C is in the programming environment that it resides (i.e., the UNIX operating system). This environment has...using C is the poor error diagnostics, having made debugging difficult. There is an on-line debugger available for use with C, in UNIX , for debugging...Stra2tegies and Efforts Towards a Prototy22 MDBS, by D. S. Kerr et al, January 1982. 13. Kernighan , B. W., and Ritchie, D. M., The C Progra mming Langugeg

  11. Evolutionary Hierarchical Multi-Criteria Metaheuristics for Scheduling in Large-Scale Grid Systems

    CERN Document Server

    Kołodziej, Joanna

    2012-01-01

    One of the most challenging issues in modelling today's large-scale computational systems is to effectively manage highly parametrised distributed environments such as computational grids, clouds, ad hoc networks and P2P networks. Next-generation computational grids must provide a wide range of services and high performance computing infrastructures. Various types of information and data processed in the large-scale dynamic grid environment may be incomplete, imprecise, and fragmented, which complicates the specification of proper evaluation criteria and which affects both the availability of resources and the final collective decisions of users. The complexity of grid architectures and grid management may also contribute towards higher energy consumption. All of these issues necessitate the development of intelligent resource management techniques, which are capable of capturing all of this complexity and optimising meaningful metrics for a wide range of grid applications.   This book covers hot topics in t...

  12. Hierarchical random cellular neural networks for system-level brain-like signal processing.

    Science.gov (United States)

    Kozma, Robert; Puljic, Marko

    2013-09-01

    Sensory information processing and cognition in brains are modeled using dynamic systems theory. The brain's dynamic state is described by a trajectory evolving in a high-dimensional state space. We introduce a hierarchy of random cellular automata as the mathematical tools to describe the spatio-temporal dynamics of the cortex. The corresponding brain model is called neuropercolation which has distinct advantages compared to traditional models using differential equations, especially in describing spatio-temporal discontinuities in the form of phase transitions. Phase transitions demarcate singularities in brain operations at critical conditions, which are viewed as hallmarks of higher cognition and awareness experience. The introduced Monte-Carlo simulations obtained by parallel computing point to the importance of computer implementations using very large-scale integration (VLSI) and analog platforms.

  13. Transitions in a genetic transcriptional regulatory system under Lévy motion

    OpenAIRE

    Zheng, Yayun; Serdukova, Larissa; Duan, Jinqiao; Kurths, Jürgen

    2016-01-01

    Based on a stochastic differential equation model for a single genetic regulatory system, we examine the dynamical effects of noisy fluctuations, arising in the synthesis reaction, on the evolution of the transcription factor activator in terms of its concentration. The fluctuations are modeled by Brownian motion and α-stable Lévy motion. Two deterministic quantities, the mean first exit time (MFET) and the first escape probability (FEP), are used to analyse the transitions from the low to hi...

  14. An effective and secure key-management scheme for hierarchical access control in E-medicine system.

    Science.gov (United States)

    Odelu, Vanga; Das, Ashok Kumar; Goswami, Adrijit

    2013-04-01

    Recently several hierarchical access control schemes are proposed in the literature to provide security of e-medicine systems. However, most of them are either insecure against 'man-in-the-middle attack' or they require high storage and computational overheads. Wu and Chen proposed a key management method to solve dynamic access control problems in a user hierarchy based on hybrid cryptosystem. Though their scheme improves computational efficiency over Nikooghadam et al.'s approach, it suffers from large storage space for public parameters in public domain and computational inefficiency due to costly elliptic curve point multiplication. Recently, Nikooghadam and Zakerolhosseini showed that Wu-Chen's scheme is vulnerable to man-in-the-middle attack. In order to remedy this security weakness in Wu-Chen's scheme, they proposed a secure scheme which is again based on ECC (elliptic curve cryptography) and efficient one-way hash function. However, their scheme incurs huge computational cost for providing verification of public information in the public domain as their scheme uses ECC digital signature which is costly when compared to symmetric-key cryptosystem. In this paper, we propose an effective access control scheme in user hierarchy which is only based on symmetric-key cryptosystem and efficient one-way hash function. We show that our scheme reduces significantly the storage space for both public and private domains, and computational complexity when compared to Wu-Chen's scheme, Nikooghadam-Zakerolhosseini's scheme, and other related schemes. Through the informal and formal security analysis, we further show that our scheme is secure against different attacks and also man-in-the-middle attack. Moreover, dynamic access control problems in our scheme are also solved efficiently compared to other related schemes, making our scheme is much suitable for practical applications of e-medicine systems.

  15. A CAD System for Identification and Classification of Breast Cancer Tumors in DCE-MR Images Based on Hierarchical Convolutional Neural Networks

    Directory of Open Access Journals (Sweden)

    Reza Rastiboroujeni

    2015-06-01

    Full Text Available In this paper, we propose a computer aided diagnosis (CAD system based on hierarchical convolutional neural networks (HCNNs to discriminate between malignant and benign tumors in breast DCE-MRIs. A HCNN is a hierarchical neural network that operates on two-dimensional images. A HCNN integrates feature extraction and classification processes into one single and fully adaptive structure. It can extract two-dimensional key features automatically, and it is relatively tolerant to geometric and local distortions in input images. We evaluate CNN implementation learning and testing processes based on gradient descent (GD and resilient back-propagation (RPROP approaches. We show that, proposed HCNN with RPROP learning approach provide an effective and robust neural structure to design a CAD base system for breast MRI, and has potential as a mechanism for the evaluation of different types of abnormalities in medical images.

  16. Multiple regulatory systems coordinate DNA replication with cell growth in Bacillus subtilis.

    Directory of Open Access Journals (Sweden)

    Heath Murray

    2014-10-01

    Full Text Available In many bacteria the rate of DNA replication is linked with cellular physiology to ensure that genome duplication is coordinated with growth. Nutrient-mediated growth rate control of DNA replication initiation has been appreciated for decades, however the mechanism(s that connects these cell cycle activities has eluded understanding. In order to help address this fundamental question we have investigated regulation of DNA replication in the model organism Bacillus subtilis. Contrary to the prevailing view we find that changes in DnaA protein level are not sufficient to account for nutrient-mediated growth rate control of DNA replication initiation, although this regulation does require both DnaA and the endogenous replication origin. We go on to report connections between DNA replication and several essential cellular activities required for rapid bacterial growth, including respiration, central carbon metabolism, fatty acid synthesis, phospholipid synthesis, and protein synthesis. Unexpectedly, the results indicate that multiple regulatory systems are involved in coordinating DNA replication with cell physiology, with some of the regulatory systems targeting oriC while others act in a oriC-independent manner. We propose that distinct regulatory systems are utilized to control DNA replication in response to diverse physiological and chemical changes.

  17. Auto and cross regulatory elements control Onecut expression in the ascidian nervous system.

    Science.gov (United States)

    Pezzotti, Maria Rosa; Locascio, Annamaria; Racioppi, Claudia; Fucci, Laura; Branno, Margherita

    2014-06-15

    The expression pattern of Onecut genes in the central and peripheral nervous systems is highly conserved in invertebrates and vertebrates but the regulatory networks in which they are involved are still largely unknown. The presence of three gene copies in vertebrates has revealed the functional roles of the Onecut genes in liver, pancreas and some populations of motor neurons. Urochordates have only one Onecut gene and are the closest living relatives of vertebrates and thus represent a good model system to understand its regulatory network and involvement in nervous system formation. In order to define the Onecut genetic cascade, we extensively characterized the Onecut upstream cis-regulatory DNA in the ascidian Ciona intestinalis. Electroporation experiments using a 2.5kb genomic fragment and of a series of deletion constructs identified a small region of 262bp able to reproduce most of the Onecut expression profile during embryonic development. Further analyses, both bioinformatic and in vivo using transient transgenes, permitted the identification of transcription factors responsible for Onecut endogenous expression. We provide evidence that Neurogenin is a direct activator of Onecut and that an autoregulatory loop is responsible for the maintenance of its expression. Furthermore, for the first time we propose the existence of a direct connection among Neurogenin, Onecut and Rx transcription factors in photoreceptor cell formation.

  18. Multiple regulatory systems coordinate DNA replication with cell growth in Bacillus subtilis.

    Science.gov (United States)

    Murray, Heath; Koh, Alan

    2014-10-01

    In many bacteria the rate of DNA replication is linked with cellular physiology to ensure that genome duplication is coordinated with growth. Nutrient-mediated growth rate control of DNA replication initiation has been appreciated for decades, however the mechanism(s) that connects these cell cycle activities has eluded understanding. In order to help address this fundamental question we have investigated regulation of DNA replication in the model organism Bacillus subtilis. Contrary to the prevailing view we find that changes in DnaA protein level are not sufficient to account for nutrient-mediated growth rate control of DNA replication initiation, although this regulation does require both DnaA and the endogenous replication origin. We go on to report connections between DNA replication and several essential cellular activities required for rapid bacterial growth, including respiration, central carbon metabolism, fatty acid synthesis, phospholipid synthesis, and protein synthesis. Unexpectedly, the results indicate that multiple regulatory systems are involved in coordinating DNA replication with cell physiology, with some of the regulatory systems targeting oriC while others act in a oriC-independent manner. We propose that distinct regulatory systems are utilized to control DNA replication in response to diverse physiological and chemical changes.

  19. A peroxisome proliferator response elements regulatory system in xenopus oocytes and its application

    Institute of Scientific and Technical Information of China (English)

    YAN Jin; FAN Chun-lei; WO Xing-de; GAO Li-ping

    2005-01-01

    Background Peroxisome proliferator-activated receptor-gamma (PPARγ) is a kind of ligand-activated transcription factors binding to peroxisome proliferator response element (PPRE), a specific recognition site. It is thought to play a critical role in glucose and lipid metabolism and in inflammation control. The aim of this study was to establish a new cellular model for the quick screening of lipid-lowering drugs, which may be effective as PPAR-γ ligands on the PPRE-mediated pathway regulatory system. Methods Two plasmids were constructed: pXOE-PPARγ, in which the human PPARγ gene was in the downstream of TFⅢA gene promoter, and pLXRN-PPRE-d2EGFP, in which the enhanced green fluorescent protein (EGFP) gene was subcloned into PPRE. The xenopus oocytes were injected with these two plamids, and consequently treated with prostaglandin E1, pioglitazone, and different kinds of lipid-lowering drugs. After 3 days, the oocytes were observed under a fluorescence microscope. To confirm the drug action,we injected pXOE-PPARγ plasmid into the oocytes, which then treated with prostaglandin E1and Hawthorn flavonoids. The mass of expressed lipoprotein lipase (LPL) in the cells was determined by enzyme labeling linked immunosorbent assay (ELISA).Conclusions It is possible to establish a PPRE regulatory EGFP reporter system in xenopus oocytes to monitor the activity of PPARγ ligand. Hawthorn flavonoids can increase the expression of gene downsteam of PPRE by effect on the PPRE pathway regulatory system.

  20. WASP-22 b: A Transiting "Hot Jupiter" Planet in a Hierarchical Triple System

    Science.gov (United States)

    Maxted, P. F. L.; Anderson, D. R.; Gillon, M.; Hellier, C.; Queloz, D.; Smalley, B.; Triaud, A. H. M. J.; West, R. G.; Wilson, D. M.; Bentley, S. J.; Cegla, H.; Collier Cameron, A.; Enoch, B.; Hebb, L.; Horne, K.; Irwin, J.; Lister, T. A.; Mayor, M.; Parley, N.; Pepe, F.; Pollacco, D.; Segransan, D.; Udry, S.; Wheatley, P. J.

    2010-12-01

    We report the discovery of a transiting planet orbiting the star TYC 6446-326-1. The star, WASP-22, is a moderately bright (V = 12.0) solar-type star (Teff = 6000 ± 100 K, [Fe/H] = -0.05 ± 0.08). The light curve of the star obtained with the WASP-South instrument shows periodic transit-like features with a depth of about 1% and a duration of 0.14 days. The presence of a transit-like feature in the light curve is confirmed using z-band photometry obtained with Faulkes Telescope South. High-resolution spectroscopy obtained with the CORALIE and HARPS spectrographs confirms the presence of a planetary mass companion with an orbital period of 3.533 days in a near-circular orbit. From a combined analysis of the spectroscopic and photometric data assuming that the star is a typical main-sequence star we estimate that the planet has a mass M p = 0.56 ± 0.02M Jup and a radius R p = 1.12 ± 0.04R Jup. In addition, there is a linear trend of 40 m s-1 yr-1 in the radial velocities measured over 16 months, from which we infer the presence of a third body with a long-period orbit in this system. The companion may be a low mass M-dwarf, a white dwarf, or a second planet.

  1. World Automata: a compositional approach to model implicit communication in hierarchical Hybrid Systems

    Directory of Open Access Journals (Sweden)

    Marta Capiluppi

    2013-08-01

    Full Text Available We propose an extension of Hybrid I/O Automata (HIOAs to model agent systems and their implicit communication through perturbation of the environment, like localization of objects or radio signals diffusion and detection. The new object, called World Automaton (WA, is built in such a way to preserve as much as possible of the compositional properties of HIOAs and its underlying theory. From the formal point of view we enrich classical HIOAs with a set of world variables whose values are functions both of time and space. World variables are treated similarly to local variables of HIOAs, except in parallel composition, where the perturbations produced by world variables are summed. In such way, we obtain a structure able to model both agents and environments, thus inducing a hierarchy in the model and leading to the introduction of a new operator. Indeed this operator, called inplacement, is needed to represent the possibility of an object (WA of living inside another object/environment (WA.

  2. Hebbian learning of hand-centred representations in a hierarchical neural network model of the primate visual system.

    Science.gov (United States)

    Born, Jannis; Galeazzi, Juan M; Stringer, Simon M

    2017-01-01

    A subset of neurons in the posterior parietal and premotor areas of the primate brain respond to the locations of visual targets in a hand-centred frame of reference. Such hand-centred visual representations are thought to play an important role in visually-guided reaching to target locations in space. In this paper we show how a biologically plausible, Hebbian learning mechanism may account for the development of localized hand-centred representations in a hierarchical neural network model of the primate visual system, VisNet. The hand-centered neurons developed in the model use an invariance learning mechanism known as continuous transformation (CT) learning. In contrast to previous theoretical proposals for the development of hand-centered visual representations, CT learning does not need a memory trace of recent neuronal activity to be incorporated in the synaptic learning rule. Instead, CT learning relies solely on a Hebbian learning rule, which is able to exploit the spatial overlap that naturally occurs between successive images of a hand-object configuration as it is shifted across different retinal locations due to saccades. Our simulations show how individual neurons in the network model can learn to respond selectively to target objects in particular locations with respect to the hand, irrespective of where the hand-object configuration occurs on the retina. The response properties of these hand-centred neurons further generalise to localised receptive fields in the hand-centred space when tested on novel hand-object configurations that have not been explored during training. Indeed, even when the network is trained with target objects presented across a near continuum of locations around the hand during training, the model continues to develop hand-centred neurons with localised receptive fields in hand-centred space. With the help of principal component analysis, we provide the first theoretical framework that explains the behavior of Hebbian learning

  3. Large eccentricity, low mutual inclination: the three-dimensional architecture of a hierarchical system of giant planets

    Energy Technology Data Exchange (ETDEWEB)

    Dawson, Rebekah I.; Clubb, Kelsey I. [Department of Astronomy, University of California, Berkeley, Hearst Field Annex B-20, Berkeley CA 94720-3411 (United States); Johnson, John Asher; Murray-Clay, Ruth A. [Harvard-Smithsonian Center for Astrophysics, Institute for Theory and Computation, 60 Garden Street, MS-51, Cambridge, MA 02138 (United States); Fabrycky, Daniel C. [Department of Astronomy and Astrophysics, University of Chicago, 5640 South Ellis Avenue, Chicago, IL 95064 (United States); Foreman-Mackey, Daniel [Center for Cosmology and Particle Physics, Department of Physics, New York University, Washington Place, New York, NY 10003 (United States); Buchhave, Lars A. [Niels Bohr Institute, University of Copenhagen, DK-2100 Copenhagen (Denmark); Cargile, Phillip A. [Department of Physics and Astronomy, Vanderbilt University, Nashville, TN 37235 (United States); Fulton, Benjamin J.; Howard, Andrew W. [Institute for Astronomy, University of Hawaii, 2680 Woodlawn Drive, Honolulu, HI 96822-1839 (United States); Hebb, Leslie [Department of Physics, Hobart and William Smith Colleges, Geneva, NY 14456 (United States); Huber, Daniel [NASA Ames Research Center, Moffett Field, CA 94035 (United States); Shporer, Avi [Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91125 (United States); Valenti, Jeff A., E-mail: rdawson@berkeley.edu [Space Telescope Science Institute, 3700 San Martin Drive, Baltimore, MD 21218 (United States)

    2014-08-20

    We establish the three-dimensional architecture of the Kepler-419 (previously KOI-1474) system to be eccentric yet with a low mutual inclination. Kepler-419b is a warm Jupiter at semi-major axis a=0.370{sub −0.006}{sup +0.007} AU with a large eccentricity (e = 0.85{sub −0.07}{sup +0.08}) measured via the 'photoeccentric effect'. It exhibits transit timing variations (TTVs) induced by the non-transiting Kepler-419c, which we uniquely constrain to be a moderately eccentric (e = 0.184 ± 0.002), hierarchically separated (a = 1.68 ± 0.03 AU) giant planet (7.3 ± 0.4 M {sub Jup}). We combine 16 quarters of Kepler photometry, radial-velocity (RV) measurements from the HIgh Resolution Echelle Spectrometer on Keck, and improved stellar parameters that we derive from spectroscopy and asteroseismology. From the RVs, we measure the mass of the inner planet to be 2.5 ± 0.3 M {sub Jup} and confirm its photometrically measured eccentricity, refining the value to e = 0.83 ± 0.01. The RV acceleration is consistent with the properties of the outer planet derived from TTVs. We find that despite their sizable eccentricities, the planets are coplanar to within 9{sub −6}{sup +8} degrees, and therefore the inner planet's large eccentricity and close-in orbit are unlikely to be the result of Kozai migration. Moreover, even over many secular cycles, the inner planet's periapse is most likely never small enough for tidal circularization. Finally, we present and measure a transit time and impact parameter from four simultaneous ground-based light curves from 1 m class telescopes, demonstrating the feasibility of ground-based follow-up of Kepler giant planets exhibiting large TTVs.

  4. Hierarchical Network Design

    DEFF Research Database (Denmark)

    Thomadsen, Tommy

    2005-01-01

    of different types of hierarchical networks. This is supplemented by a review of ring network design problems and a presentation of a model allowing for modeling most hierarchical networks. We use methods based on linear programming to design the hierarchical networks. Thus, a brief introduction to the various....... The thesis investigates models for hierarchical network design and methods used to design such networks. In addition, ring network design is considered, since ring networks commonly appear in the design of hierarchical networks. The thesis introduces hierarchical networks, including a classification scheme...... linear programming based methods is included. The thesis is thus suitable as a foundation for study of design of hierarchical networks. The major contribution of the thesis consists of seven papers which are included in the appendix. The papers address hierarchical network design and/or ring network...

  5. Cytoplasmic dynein and its regulatory proteins in Golgi pathology in nervous system disorders

    Directory of Open Access Journals (Sweden)

    Dick eJaarsma

    2015-10-01

    Full Text Available The Golgi apparatus is a dynamic organelle involved in processing and sorting of lipids and proteins. In neurons, the Golgi apparatus is important for the development of axons and dendrites and maintenance of their highly polarized morphology. The motor protein complex cytoplasmic dynein has an important role in Golgi apparatus positioning and function. Together with dynactin and other regulatory factors it drives microtubule minus-end directed motility of Golgi membranes. Inhibition of dynein results in fragmentation and dispersion of the Golgi ribbon in the neuronal cell body, resembling the Golgi abnormalities observed in some neurodegenerative disorders, in particular motor neuron diseases. Mutations in dynein and its regulatory factors, including the dynactin subunit p150Glued, BICD2 and Lis-1, are associated with several human nervous system disorders, including cortical malformation and motor neuropathy. Here we review the role of dynein and its regulatory factors in Golgi function and positioning, and the potential role of dynein malfunction in causing Golgi apparatus abnormalities in nervous system disorders.

  6. The sae locus of Staphylococcus aureus encodes a two-component regulatory system.

    Science.gov (United States)

    Giraudo, A T; Calzolari, A; Cataldi, A A; Bogni, C; Nagel, R

    1999-08-01

    Sae is a regulatory locus that activates the production of several exoproteins in Staphylococcus aureus. A 3.4-kb fragment of a S. aureus genomic library, screened with a probe adjacent to the transposon insertion of a sae::Tn551 mutant, was cloned into a bifunctional vector. This fragment was shown to carry the sae locus by restoration of exoprotein production in sae mutants. The sae locus was mapped to the SmaI-D fragment of the staphylococcal chromosome by pulse-field electrophoresis. Sequence analysis of the cloned fragment revealed the presence of two genes, designated saeR and saeS, encoding a response regulator and a histidine protein kinase, respectively, with high homology to other bacterial two-component regulatory systems.

  7. Hierarchical Least Squares Parameter Estimation for Multivariable ARX-like Systems%多变量ARX-like系统的递阶最小二乘估计

    Institute of Scientific and Technical Information of China (English)

    袁平; 丁峰

    2008-01-01

    利用Kronecker积,推导出多变量ARX-like随机系统的辨识模型,使用递阶辨识原理研制了一个递阶最小二乘参数估计算法.提出的递阶最小二乘算法比现存递推最小二乘算法计算量小.给出了为仿真例子.%By using the Kronecker product,An identification model for multivariable ARX-like stochastic systems is derived and developed a hierarchical least squares parameter estimation algorithm by the hierarchical identification principle.The proposed algorithm has less computational eorts than the recursive least squares algorithm.A simulation example is included.

  8. Post-Transcriptional Regulation by the Csr Global Regulatory System in Escherichia coli

    OpenAIRE

    Suzuki, Kazushi; 鈴木, 一史

    2007-01-01

    In many species of bacteria, the Csr (carbon storage regulator) global regulatory system coordinates the expression of various genes. In Escherichia coli, the central component of this system, CsrA, is a RNA-binding protein. The CsrA is a homodimer and binds to leader segments of target mRNAs, affecting their translation and stability. CsrA activity is regulated by two small non-coding RNAs, CsrB and CsrC. These RNAs contain multiple CsrA-binding sequences and act by sequestering CsrA. In thi...

  9. Hierarchical Multiagent Reinforcement Learning

    Science.gov (United States)

    2004-01-25

    In this paper, we investigate the use of hierarchical reinforcement learning (HRL) to speed up the acquisition of cooperative multiagent tasks. We...introduce a hierarchical multiagent reinforcement learning (RL) framework and propose a hierarchical multiagent RL algorithm called Cooperative HRL. In

  10. MX Hierarchical Networking System.

    Science.gov (United States)

    1982-02-01

    Information needed to analyze the deployment masterplan . This is the facili- ties level of detail. The third level (level 3) reflects the quantities of...Summary) 100 Level 1 SUBTOTAL 1 100 Level 2 (Deployment Masterplan ) DAA 350 OBTS 200 OPBASE 600 DDA/DTN 1,200 AUX OPBASE 550 LIFE SUPPORT 300...CEMXPA Program Summary -- 1 -- 100 Deployment Masterplan -- 2 -- 260 360 CEMXCO Deployment !asterplan 0 3 -- 900 900 AFRCE Deployment Masterplan 1 0

  11. A Hierarchical Scheduling Model of Manufacturing Systems on Receding Horizon%制造系统的递阶滚动优化调度模型

    Institute of Scientific and Technical Information of China (English)

    宋春跃; 高春华; 王慧; 李平

    2002-01-01

    A new hierarchical optimal control production and setup scheduling model is discussed in an inflexible manufacturing system with jump Markov disturbances consisting of a single machine. The system can produce several types of products,but each time it can produce only one type of product. A setup (with setup time or cost or both) is required ff production is tobe switched from one type of product to another. The objective is to minimize the costs of setup, production and inventory. Thedecision variables are a sequence of setups and the production plan. Based on the idea of hierarchical control policy, a new hierarchical framework and hedging point control policy construct the hierarchical optimal control policy. An algorithm on receding horizon is also addressed.%研究的对象是只有一台不可靠(failure-prone)机器的非完全柔性制造系统,该系统能生产多种产品,但在同一时刻只能生产一种产品,并且当机器由生产一种产品向生产另一种产品切换时,需要考虑setup时间及其成本.待决策变量是setup序列及产品生产率.本文基于非完全柔性制造系统的特点,引入递阶层控的思想,采用新的递阶结构框架和阈值控制策略,对问题进行分解,建立了考虑setup时间及成本的递阶流率控制最优化调度模型,并给出了递阶的滚动优化算法.仿真结果表明,这种调度策略更易于工程实现.

  12. Credit networks and systemic risk of Chinese local financing platforms: Too central or too big to fail?. -based on different credit correlations using hierarchical methods

    Science.gov (United States)

    He, Fang; Chen, Xi

    2016-11-01

    The accelerating accumulation and risk concentration of Chinese local financing platforms debts have attracted wide attention throughout the world. Due to the network of financial exposures among institutions, the failure of several platforms or regions of systemic importance will probably trigger systemic risk and destabilize the financial system. However, the complex network of credit relationships in Chinese local financing platforms at the state level remains unknown. To fill this gap, we presented the first complex networks and hierarchical cluster analysis of the credit market of Chinese local financing platforms using the ;bottom up; method from firm-level data. Based on balance-sheet channel, we analyzed the topology and taxonomy by applying the analysis paradigm of subdominant ultra-metric space to an empirical data in 2013. It is remarked that we chose to extract the network of co-financed financing platforms in order to evaluate the effect of risk contagion from platforms to bank system. We used the new credit similarity measure by combining the factor of connectivity and size, to extract minimal spanning trees (MSTs) and hierarchical trees (HTs). We found that: (1) the degree distributions of credit correlation backbone structure of Chinese local financing platforms are fat tailed, and the structure is unstable with respect to targeted failures; (2) the backbone is highly hierarchical, and largely explained by the geographic region; (3) the credit correlation backbone structure based on connectivity and size is significantly heterogeneous; (4) key platforms and regions of systemic importance, and contagion path of systemic risk are obtained, which are contributed to preventing systemic risk and regional risk of Chinese local financing platforms and preserving financial stability under the framework of macro prudential supervision. Our approach of credit similarity measure provides a means of recognizing ;systemically important; institutions and regions

  13. A systems biology approach to construct the gene regulatory network of systemic inflammation via microarray and databases mining

    Directory of Open Access Journals (Sweden)

    Lan Chung-Yu

    2008-09-01

    Full Text Available Abstract Background Inflammation is a hallmark of many human diseases. Elucidating the mechanisms underlying systemic inflammation has long been an important topic in basic and clinical research. When primary pathogenetic events remains unclear due to its immense complexity, construction and analysis of the gene regulatory network of inflammation at times becomes the best way to understand the detrimental effects of disease. However, it is difficult to recognize and evaluate relevant biological processes from the huge quantities of experimental data. It is hence appealing to find an algorithm which can generate a gene regulatory network of systemic inflammation from high-throughput genomic studies of human diseases. Such network will be essential for us to extract valuable information from the complex and chaotic network under diseased conditions. Results In this study, we construct a gene regulatory network of inflammation using data extracted from the Ensembl and JASPAR databases. We also integrate and apply a number of systematic algorithms like cross correlation threshold, maximum likelihood estimation method and Akaike Information Criterion (AIC on time-lapsed microarray data to refine the genome-wide transcriptional regulatory network in response to bacterial endotoxins in the context of dynamic activated genes, which are regulated by transcription factors (TFs such as NF-κB. This systematic approach is used to investigate the stochastic interaction represented by the dynamic leukocyte gene expression profiles of human subject exposed to an inflammatory stimulus (bacterial endotoxin. Based on the kinetic parameters of the dynamic gene regulatory network, we identify important properties (such as susceptibility to infection of the immune system, which may be useful for translational research. Finally, robustness of the inflammatory gene network is also inferred by analyzing the hubs and "weak ties" structures of the gene network

  14. A regulatory role for Staphylococcus aureus toxin-antitoxin system PemIKSa.

    Science.gov (United States)

    Bukowski, Michal; Lyzen, Robert; Helbin, Weronika M; Bonar, Emilia; Szalewska-Palasz, Agnieszka; Wegrzyn, Grzegorz; Dubin, Grzegorz; Dubin, Adam; Wladyka, Benedykt

    2013-01-01

    Toxin-antitoxin systems were shown to be involved in plasmid maintenance when they were initially discovered, but other roles have been demonstrated since. Here we identify and characterize a novel toxin-antitoxin system (pemIKSa) located on Staphylococcus aureus plasmid pCH91. The toxin (PemKSa) is a sequence-specific endoribonuclease recognizing the tetrad sequence U↓AUU, and the antitoxin (PemISa) inhibits toxin activity by physical interaction. Although the toxin-antitoxin system is responsible for stable plasmid maintenance our data suggest the participation of pemIKSa in global regulation of staphylococcal virulence by alteration of the translation of large pools of genes. We propose a common mechanism of reversible activation of toxin-antitoxin systems based on antitoxin transcript resistance to toxin cleavage. Elucidation of this mechanism is particularly interesting because reversible activation is a prerequisite for the proposed general regulatory role of toxin-antitoxin systems.

  15. Social insect colony as a biological regulatory system: modelling information flow in dominance networks.

    Science.gov (United States)

    Nandi, Anjan K; Sumana, Annagiri; Bhattacharya, Kunal

    2014-12-06

    Social insects provide an excellent platform to investigate flow of information in regulatory systems since their successful social organization is essentially achieved by effective information transfer through complex connectivity patterns among the colony members. Network representation of such behavioural interactions offers a powerful tool for structural as well as dynamical analysis of the underlying regulatory systems. In this paper, we focus on the dominance interaction networks in the tropical social wasp Ropalidia marginata-a species where behavioural observations indicate that such interactions are principally responsible for the transfer of information between individuals about their colony needs, resulting in a regulation of their own activities. Our research reveals that the dominance networks of R. marginata are structurally similar to a class of naturally evolved information processing networks, a fact confirmed also by the predominance of a specific substructure-the 'feed-forward loop'-a key functional component in many other information transfer networks. The dynamical analysis through Boolean modelling confirms that the networks are sufficiently stable under small fluctuations and yet capable of more efficient information transfer compared to their randomized counterparts. Our results suggest the involvement of a common structural design principle in different biological regulatory systems and a possible similarity with respect to the effect of selection on the organization levels of such systems. The findings are also consistent with the hypothesis that dominance behaviour has been shaped by natural selection to co-opt the information transfer process in such social insect species, in addition to its primal function of mediation of reproductive competition in the colony.

  16. Identification of the regulatory logic controlling Salmonella pathoadaptation by the SsrA-SsrB two-component system.

    Directory of Open Access Journals (Sweden)

    Ana M Tomljenovic-Berube

    2010-03-01

    Full Text Available Sequence data from the past decade has laid bare the significance of horizontal gene transfer in creating genetic diversity in the bacterial world. Regulatory evolution, in which non-coding DNA is mutated to create new regulatory nodes, also contributes to this diversity to allow niche adaptation and the evolution of pathogenesis. To survive in the host environment, Salmonella enterica uses a type III secretion system and effector proteins, which are activated by the SsrA-SsrB two-component system in response to the host environment. To better understand the phenomenon of regulatory evolution in S. enterica, we defined the SsrB regulon and asked how this transcription factor interacts with the cis-regulatory region of target genes. Using ChIP-on-chip, cDNA hybridization, and comparative genomics analyses, we describe the SsrB-dependent regulon of ancestral and horizontally acquired genes. Further, we used a genetic screen and computational analyses integrating experimental data from S. enterica and sequence data from an orthologous regulatory system in the insect endosymbiont, Sodalis glossinidius, to identify the conserved yet flexible palindrome sequence that defines DNA recognition by SsrB. Mutational analysis of a representative promoter validated this palindrome as the minimal architecture needed for regulatory input by SsrB. These data provide a high-resolution map of a regulatory network and the underlying logic enabling pathogen adaptation to a host.

  17. Hierarchical multi-innovation identification methods for multivariable equation-error-like type systems%类多变量方程误差类系统的递阶多新息辨识方法

    Institute of Scientific and Technical Information of China (English)

    丁锋; 王艳娇

    2014-01-01

    According to the hierarchical identification principle,this paper presents the hierarchical stochastic gra-dient algorithms and the hierarchical gradient based iterative algorithms, the hierarchical least squares algorithms and the hierarchical least squares based iterative algorithms for multivariable equation-error-like systems and multi-variable equation-error ARMA-like systems,and further derives the hierarchical multi-innovation gradient algorithms and the hierarchical multi-innovation least squares algorithms. In order to reduce computational burdens,this paper derives the filtering based hierarchical identification algorithms and the filtering based hierarchical multi-innovation identification algorithms for multivariable equation-error ARMA-like systems using the filtering technique. Finally, the computational efficiency and the computational steps of some typical identification algorithms are discussed.%根据递阶辨识原理,研究了类多变量方程误差系统和类多变量方程误差ARMA系统递阶随机梯度方法和递阶梯度迭代方法、递阶最小二乘方法和递阶最小二乘迭代方法。进一步利用多新息辨识理论,推导了递阶多新息梯度辨识方法和递阶多新息最小二乘辨识方法。为减小计算量,推导了基于滤波的类多变量方程误差ARMA系统递阶辨识方法和递阶多新息辨识方法。讨论了几个典型辨识算法的计算量,并给出了计算参数估计的步骤。

  18. Molecular-Level Design of Hierarchically Porous Carbons Codoped with Nitrogen and Phosphorus Capable of In Situ Self-Activation for Sustainable Energy Systems.

    Science.gov (United States)

    Ai, Wei; Wang, Xuewan; Zou, Chenji; Du, Zhuzhu; Fan, Zhanxi; Zhang, Hua; Chen, Peng; Yu, Ting; Huang, Wei

    2017-02-01

    Hierarchically porous carbons are attracting tremendous attention in sustainable energy systems, such as lithium ion battery (LIB) and fuel cell, due to their excellent transport properties that arise from the high surface area and rich porosity. The state-of-the-art approaches for synthesizing hierarchically porous carbons normally require chemical- and/or template-assisted activation techniques, which is complicate, time consuming, and not feasible for large scale production. Here, a molecular-level design principle toward large-scale synthesis of nitrogen and phosphorus codoped hierarchically porous carbon (NPHPC) through an in situ self-activation process is proposed. The material is fabricated based on the direct pyrolysis of a well-designed polymer, melamine polyphosphate, which is capable of in situ self-activation to generate large specific surface area (1479 m(2) g(-1) ) and hierarchical pores in the final NPHPC. As an anode material for LIB, NPHPC delivers a high reversible capacity of 1073 mAh g(-1) and an excellent cyclic stability for 300 cycles with negligible capacity decay. The peculiar structural properties and synergistic effect of N and P codopants also enable NPHPC a promising electrocatalyst for oxygen reduction reaction, a key cathodic reaction process of many energy conversion devices (for example, fuel cells and metal air batteries). Electrochemical measurements show NPHPC a comparable electrocatalytic performance to commercial Pt/C catalyst (onset potential of 0.88 V vs reversible hydrogen electrode in alkaline medium) with excellent stability (89.8% retention after 20 000 s continuous operation) and superior methanol tolerance. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  19. Hierarchical Network Design

    DEFF Research Database (Denmark)

    Thomadsen, Tommy

    2005-01-01

    Communication networks are immensely important today, since both companies and individuals use numerous services that rely on them. This thesis considers the design of hierarchical (communication) networks. Hierarchical networks consist of layers of networks and are well-suited for coping...... the clusters. The design of hierarchical networks involves clustering of nodes, hub selection, and network design, i.e. selection of links and routing of ows. Hierarchical networks have been in use for decades, but integrated design of these networks has only been considered for very special types of networks....... The thesis investigates models for hierarchical network design and methods used to design such networks. In addition, ring network design is considered, since ring networks commonly appear in the design of hierarchical networks. The thesis introduces hierarchical networks, including a classification scheme...

  20. Synthetic Biology and the U.S. Biotechnology Regulatory System: Challenges and Options

    Energy Technology Data Exchange (ETDEWEB)

    Carter, Sarah R. [J. Craig Venter Institute; Rodemeyer, Michael [University of Virginia; Garfinkel, Michele S. [EMBO; Friedman, Robert M [J. Craig Venter Institute

    2014-05-01

    Synthetic Biology and the U.S. Biotechnology Regulatory System: Challenges and Options Sarah R. Carter, Ph.D., J. Craig Venter Institute; Michael Rodemeyer, J.D., University of Virginia; Michele S. Garfinkel, Ph.D., EMBO; Robert M. Friedman, Ph.D., J. Craig Venter Institute In recent years, a range of genetic engineering techniques referred to as “synthetic biology” has significantly expanded the tool kit available to scientists and engineers, providing them with far greater capabilities to engineer organisms than previous techniques allowed. The field of synthetic biology includes the relatively new ability to synthesize long pieces of DNA from chemicals, as well as improved methods for genetic manipulation and design of genetic pathways to achieve more precise control of biological systems. These advances will help usher in a new generation of genetically engineered microbes, plants, and animals. The JCVI Policy Center team, along with researchers at the University of Virginia and EMBO, examined how well the current U.S. regulatory system for genetically engineered products will handle the near-term introduction of organisms engineered using synthetic biology. In particular, the focus was on those organisms intended to be used or grown directly in the environment, outside of a contained facility. The study concludes that the U.S. regulatory agencies have adequate legal authority to address most, but not all, potential environmental, health and safety concerns posed by these organisms. Such near-term products are likely to represent incremental changes rather than a marked departure from previous genetically engineered organisms. However, the study also identified two key challenges for the regulatory system, which are detailed in the report. First, USDA’s authority over genetically engineered plants depends on the use of an older engineering technique that is no longer necessary for many applications. The shift to synthetic biology and other newer genetic

  1. Static Correctness of Hierarchical Procedures

    DEFF Research Database (Denmark)

    Schwartzbach, Michael Ignatieff

    1990-01-01

    A system of hierarchical, fully recursive types in a truly imperative language allows program fragments written for small types to be reused for all larger types. To exploit this property to enable type-safe hierarchical procedures, it is necessary to impose a static requirement on procedure calls....... We introduce an example language and prove the existence of a sound requirement which preserves static correctness while allowing hierarchical procedures. This requirement is further shown to be optimal, in the sense that it imposes as few restrictions as possible. This establishes the theoretical...... basis for a general type hierarchy with static type checking, which enables first-order polymorphism combined with multiple inheritance and specialization in a language with assignments. We extend the results to include opaque types. An opaque version of a type is different from the original but has...

  2. 一类高阶线性系统的分层控制%Hierarchical Control of a Class of High-dimensional Linear Systems

    Institute of Scientific and Technical Information of China (English)

    杨开红; 季海波

    2015-01-01

    近年来,一种基于系统层次结构的分层控制方法发展了起来,它主要针对的是高阶复杂系统。为了分析和控制这类系统,我们首先根据需要构建一个合适的低阶抽象系统,然后在此基础上分析和设计原始系统控制律,即所谓的接口函数。本文将此方法用于一类高阶线性系统的稳定控制问题,并得到了相应的控制律。最后,算例部分的仿真结果说明了这种方法的有效性。%Recently, the hierarchical control method based on a hierarchical architecture has been developed, which is mainly aimed at large-scale complex systems. In order to analyze and control this class of systems, we at first, construct an appropri-ate and low-dimensional abstract system, then synthesize and lift the control law from the obtained abstraction of the original system by the notion of interface function. This paper studies the stable control problem of a class of high-dimensional linear systems and obtains the results by employing the hierarchical control method. Finally, a simulation example is given to illus-trate the effectiveness of this method.

  3. Modular and coordinated expression of immune system regulatory and signaling components in the developing and adult nervous system.

    Science.gov (United States)

    Monzón-Sandoval, Jimena; Castillo-Morales, Atahualpa; Crampton, Sean; McKelvey, Laura; Nolan, Aoife; O'Keeffe, Gerard; Gutierrez, Humberto

    2015-01-01

    During development, the nervous system (NS) is assembled and sculpted through a concerted series of neurodevelopmental events orchestrated by a complex genetic programme. While neural-specific gene expression plays a critical part in this process, in recent years, a number of immune-related signaling and regulatory components have also been shown to play key physiological roles in the developing and adult NS. While the involvement of individual immune-related signaling components in neural functions may reflect their ubiquitous character, it may also reflect a much wider, as yet undescribed, genetic network of immune-related molecules acting as an intrinsic component of the neural-specific regulatory machinery that ultimately shapes the NS. In order to gain insights into the scale and wider functional organization of immune-related genetic networks in the NS, we examined the large scale pattern of expression of these genes in the brain. Our results show a highly significant correlated expression and transcriptional clustering among immune-related genes in the developing and adult brain, and this correlation was the highest in the brain when compared to muscle, liver, kidney and endothelial cells. We experimentally tested the regulatory clustering of immune system (IS) genes by using microarray expression profiling in cultures of dissociated neurons stimulated with the pro-inflammatory cytokine TNF-alpha, and found a highly significant enrichment of immune system-related genes among the resulting differentially expressed genes. Our findings strongly suggest a coherent recruitment of entire immune-related genetic regulatory modules by the neural-specific genetic programme that shapes the NS.

  4. Alternative approaches for identifying acute systemic toxicity: Moving from research to regulatory testing.

    Science.gov (United States)

    Hamm, Jon; Sullivan, Kristie; Clippinger, Amy J; Strickland, Judy; Bell, Shannon; Bhhatarai, Barun; Blaauboer, Bas; Casey, Warren; Dorman, David; Forsby, Anna; Garcia-Reyero, Natàlia; Gehen, Sean; Graepel, Rabea; Hotchkiss, Jon; Lowit, Anna; Matheson, Joanna; Reaves, Elissa; Scarano, Louis; Sprankle, Catherine; Tunkel, Jay; Wilson, Dan; Xia, Menghang; Zhu, Hao; Allen, David

    2017-06-01

    Acute systemic toxicity testing provides the basis for hazard labeling and risk management of chemicals. A number of international efforts have been directed at identifying non-animal alternatives for in vivo acute systemic toxicity tests. A September 2015 workshop, Alternative Approaches for Identifying Acute Systemic Toxicity: Moving from Research to Regulatory Testing, reviewed the state-of-the-science of non-animal alternatives for this testing and explored ways to facilitate implementation of alternatives. Workshop attendees included representatives from international regulatory agencies, academia, nongovernmental organizations, and industry. Resources identified as necessary for meaningful progress in implementing alternatives included compiling and making available high-quality reference data, training on use and interpretation of in vitro and in silico approaches, and global harmonization of testing requirements. Attendees particularly noted the need to characterize variability in reference data to evaluate new approaches. They also noted the importance of understanding the mechanisms of acute toxicity, which could be facilitated by the development of adverse outcome pathways. Workshop breakout groups explored different approaches to reducing or replacing animal use for acute toxicity testing, with each group crafting a roadmap and strategy to accomplish near-term progress. The workshop steering committee has organized efforts to implement the recommendations of the workshop participants. Copyright © 2017 Elsevier Ltd. All rights reserved.

  5. Information Management system of the safety regulatory requirements and guidance for the Korea next generation reactors

    Energy Technology Data Exchange (ETDEWEB)

    Yun, Y. C. [LG-EDS Systems, Seoul (Korea, Republic of); Lee, J. H.; Lee, H. C.; Lee, J. S. [Korea Institute of Nuclear Safety, Taejon (Korea, Republic of)

    2000-05-01

    In order to achieve the safety of the Korea Next Generation Reactors (KNGR), the Korea Institute of Nuclear Safety has carried out the Safety and Regulatory Requirements and Guidance (SRRG) development program from 1992 such as establishment of the SRRG hierarchy, development of technical requirements and guidance, and consideration of new licensing system. The SRRG hierarchy for the KNGR was consisted of five tiers; Safety Objectives, Safety Principles, General Safety Criteria, Specific Safety Requirements and Safety Regulatory Guides. The developed SRRG have been compared the criteria in 10CFR and Reg. Guide in the U.S.A and the IAEA documents for assuring internationally acceptable level of the SRRG. To improve the efficiency and accuracy of SRRG development, the construction of database system was required in the course of development. Therefore, the Information Management System of SRRG for the KNGR has been developed which enables developers to quickly and accurately seek and systematically manage whole contexts of the SRRG, reference requirements, and current atomic energy regulation rules. Moreover, through homepage whose URL is 'http://kngr.kins.re.kr', the concerned persons and public can acquire the information related with SRRG and KNGR project, and post his/her thought to the opinion forum in the homepage.

  6. Hierarchical modeling and control of hybrid systems with two layers; Hierarchische Modellierung und Regelung hybrider Systeme auf zwei Ebenen

    Energy Technology Data Exchange (ETDEWEB)

    Stursberg, Olaf; Paschedag, Tina; Rungger, Matthias; Ding, Hao [Kassel Univ. (Germany). Fachgebiet Regelungs- und Systemtheorie

    2010-08-15

    While hybrid dynamic models are, to a certain degree, established for modeling systems with heterogeneous dynamics, most approaches for design and analysis of hybrid systems are restricted to monolithic models without hierarchy. This contribution first shows, how modular hybrid systems with two layers of decision, as appropriate for representing manufacturing systems for example, can be modeled systematically. The second part proposes a technique for fixing discrete inputs (for coordinating control) and continuous inputs (for embedded continuous controllers) in combination. The method uses a graph-based search on the upper decision layer, while principles of predictive control are used on the lower layer. The procedure of modeling and control is illustrated for a manufacturing process. (orig.)

  7. A developmental systems perspective on epistasis: computational exploration of mutational interactions in model developmental regulatory networks.

    Directory of Open Access Journals (Sweden)

    Jayson Gutiérrez

    Full Text Available The way in which the information contained in genotypes is translated into complex phenotypic traits (i.e. embryonic expression patterns depends on its decoding by a multilayered hierarchy of biomolecular systems (regulatory networks. Each layer of this hierarchy displays its own regulatory schemes (i.e. operational rules such as +/- feedback and associated control parameters, resulting in characteristic variational constraints. This process can be conceptualized as a mapping issue, and in the context of highly-dimensional genotype-phenotype mappings (GPMs epistatic events have been shown to be ubiquitous, manifested in non-linear correspondences between changes in the genotype and their phenotypic effects. In this study I concentrate on epistatic phenomena pervading levels of biological organization above the genetic material, more specifically the realm of molecular networks. At this level, systems approaches to studying GPMs are specially suitable to shed light on the mechanistic basis of epistatic phenomena. To this aim, I constructed and analyzed ensembles of highly-modular (fully interconnected networks with distinctive topologies, each displaying dynamic behaviors that were categorized as either arbitrary or functional according to early patterning processes in the Drosophila embryo. Spatio-temporal expression trajectories in virtual syncytial embryos were simulated via reaction-diffusion models. My in silico mutational experiments show that: 1 the average fitness decay tendency to successively accumulated mutations in ensembles of functional networks indicates the prevalence of positive epistasis, whereas in ensembles of arbitrary networks negative epistasis is the dominant tendency; and 2 the evaluation of epistatic coefficients of diverse interaction orders indicates that, both positive and negative epistasis are more prevalent in functional networks than in arbitrary ones. Overall, I conclude that the phenotypic and fitness effects of

  8. A cellular and regulatory map of the cholinergic nervous system of C. elegans.

    Science.gov (United States)

    Pereira, Laura; Kratsios, Paschalis; Serrano-Saiz, Esther; Sheftel, Hila; Mayo, Avi E; Hall, David H; White, John G; LeBoeuf, Brigitte; Garcia, L Rene; Alon, Uri; Hobert, Oliver

    2015-12-25

    Nervous system maps are of critical importance for understanding how nervous systems develop and function. We systematically map here all cholinergic neuron types in the male and hermaphrodite C. elegans nervous system. We find that acetylcholine (ACh) is the most broadly used neurotransmitter and we analyze its usage relative to other neurotransmitters within the context of the entire connectome and within specific network motifs embedded in the connectome. We reveal several dynamic aspects of cholinergic neurotransmitter identity, including a sexually dimorphic glutamatergic to cholinergic neurotransmitter switch in a sex-shared interneuron. An expression pattern analysis of ACh-gated anion channels furthermore suggests that ACh may also operate very broadly as an inhibitory neurotransmitter. As a first application of this comprehensive neurotransmitter map, we identify transcriptional regulatory mechanisms that control cholinergic neurotransmitter identity and cholinergic circuit assembly.

  9. The use of information systems to transform utilities and regulatory commissions: The application of geographic information systems

    Energy Technology Data Exchange (ETDEWEB)

    Wirick, D.W.; Montgomery, G.E.; Wagman, D.C.; Spiers, J.

    1995-09-01

    One technology that can assist utilities remain financially viable in competitive markets and help utilities and regulators to better serve the public is information technology. Because geography is an important part of an electric, natural gas, telecommunications, or water utility, computer-based Geographic Information Systems (GIS) and related Automated Mapping/Facilities Management systems are emerging as core technologies for managing an ever-expanding variety of formerly manual or paper-based tasks. This report focuses on GIS as an example of the types of information systems that can be used by utilities and regulatory commissions. Chapter 2 provides general information about information systems and effects of information on organizations; Chapter 3 explores the conversion of an organization to an information-based one; Chapters 4 and 5 set out GIS as an example of the use of information technologies to transform the operations of utilities and commissions; Chapter 6 describes the use of GIS and other information systems for organizational reengineering efforts; and Chapter 7 examines the regulatory treatment of information systems.

  10. The use of information systems to transform utilities and regulatory commissions: The application of geographic information systems

    Energy Technology Data Exchange (ETDEWEB)

    Wirick, D.W.; Montgomery, G.E.; Wagman, D.C.; Spiers, J.

    1995-09-01

    One technology that can assist utilities remain financially viable in competitive markets and help utilities and regulators to better serve the public is information technology. Because geography is an important part of an electric, natural gas, telecommunications, or water utility, computer-based Geographic Information Systems (GIS) and related Automated Mapping/Facilities Management systems are emerging as core technologies for managing an ever-expanding variety of formerly manual or paper-based tasks. This report focuses on GIS as an example of the types of information systems that can be used by utilities and regulatory commissions. Chapter 2 provides general information about information systems and effects of information on organizations; Chapter 3 explores the conversion of an organization to an information-based one; Chapters 4 and 5 set out GIS as an example of the use of information technologies to transform the operations of utilities and commissions; Chapter 6 describes the use of GIS and other information systems for organizational reengineering efforts; and Chapter 7 examines the regulatory treatment of information systems.

  11. Synthetic biology and regulatory networks: where metabolic systems biology meets control engineering.

    Science.gov (United States)

    He, Fei; Murabito, Ettore; Westerhoff, Hans V

    2016-04-01

    Metabolic pathways can be engineered to maximize the synthesis of various products of interest. With the advent of computational systems biology, this endeavour is usually carried out through in silico theoretical studies with the aim to guide and complement further in vitro and in vivo experimental efforts. Clearly, what counts is the result in vivo, not only in terms of maximal productivity but also robustness against environmental perturbations. Engineering an organism towards an increased production flux, however, often compromises that robustness. In this contribution, we review and investigate how various analytical approaches used in metabolic engineering and synthetic biology are related to concepts developed by systems and control engineering. While trade-offs between production optimality and cellular robustness have already been studied diagnostically and statically, the dynamics also matter. Integration of the dynamic design aspects of control engineering with the more diagnostic aspects of metabolic, hierarchical control and regulation analysis is leading to the new, conceptual and operational framework required for the design of robust and productive dynamic pathways.

  12. Gluconacetobacter diazotrophicus PAL5 possesses an active quorum sensing regulatory system.

    Science.gov (United States)

    Bertini, Elisa V; Nieto Peñalver, Carlos G; Leguina, Ana C; Irazusta, Verónica P; de Figueroa, Lucía I C

    2014-09-01

    The endophytic bacterium Gluconacetobacter diazotrophicus colonizes a broad range of host plants. Its plant growth-promoting capability is related to the capacity to perform biological nitrogen fixation, the biosynthesis of siderophores, antimicrobial substances and the solubilization of mineral nutrients. Colonization of and survival in these endophytic niche requires a complex regulatory network. Among these, quorum sensing systems (QS) are signaling mechanisms involved in the control of several genes related to microbial interactions, host colonization and stress survival. G. diazotrophicus PAL5 possesses a QS composed of a luxR and a luxI homolog, and produces eight molecules from the AHL family as QS signals. In this report data are provided showing that glucose concentration modifies the relative levels of these signal molecules. The activity of G. diazotrophicus PAL5 QS is also altered in presence of other carbon sources and under saline stress conditions. Inactivation of the QS system of G. diazotrophicus PAL5 by means of a quorum quenching strategy allowed the identification of extracellular and intracellular proteins under the control of this regulatory mechanism.

  13. Regulatory systems for hypoxia-inducible gene expression in ischemic heart disease gene therapy.

    Science.gov (United States)

    Kim, Hyun Ah; Rhim, Taiyoun; Lee, Minhyung

    2011-07-18

    Ischemic heart diseases are caused by narrowed coronary arteries that decrease the blood supply to the myocardium. In the ischemic myocardium, hypoxia-responsive genes are up-regulated by hypoxia-inducible factor-1 (HIF-1). Gene therapy for ischemic heart diseases uses genes encoding angiogenic growth factors and anti-apoptotic proteins as therapeutic genes. These genes increase blood supply into the myocardium by angiogenesis and protect cardiomyocytes from cell death. However, non-specific expression of these genes in normal tissues may be harmful, since growth factors and anti-apoptotic proteins may induce tumor growth. Therefore, tight gene regulation is required to limit gene expression to ischemic tissues, to avoid unwanted side effects. For this purpose, various gene expression strategies have been developed for ischemic-specific gene expression. Transcriptional, post-transcriptional, and post-translational regulatory strategies have been developed and evaluated in ischemic heart disease animal models. The regulatory systems can limit therapeutic gene expression to ischemic tissues and increase the efficiency of gene therapy. In this review, recent progresses in ischemic-specific gene expression systems are presented, and their applications to ischemic heart diseases are discussed.

  14. Stochastic Resonance in a Gene Transcriptional Regulatory System with Time Delay

    Institute of Scientific and Technical Information of China (English)

    ZENG Chun-Hua; XIE Chong-Wei

    2008-01-01

    We study the stochastic resonance (SR) phenomenon in a time-delayed gene transcriptional regulatory system under the simultaneous action of a multiplicative noise and an additive noise and a weak periodic signal.The expression of the signal-to-noise ratio RSNR is obtained by applying the two-state theory in adiabatic limit under the condition of small delay time.The effects of delay time and intensity of the correlation between multiplicative and additive noise on RSNR are discussed.It is found that the delay time (T) enhances the SR of the system.The correlation intensity λ enhances the SR in the RSNR - D plot (D denotes the multiplicative noise intensity),but weakens the SR in the RSNR - α plot (α denotes the additive noise intensity).

  15. A comparison of hierarchical cluster analysis and league table rankings as methods for analysis and presentation of district health system performance data in Uganda.

    Science.gov (United States)

    Tashobya, Christine K; Dubourg, Dominique; Ssengooba, Freddie; Speybroeck, Niko; Macq, Jean; Criel, Bart

    2016-03-01

    In 2003, the Uganda Ministry of Health introduced the district league table for district health system performance assessment. The league table presents district performance against a number of input, process and output indicators and a composite index to rank districts. This study explores the use of hierarchical cluster analysis for analysing and presenting district health systems performance data and compares this approach with the use of the league table in Uganda. Ministry of Health and district plans and reports, and published documents were used to provide information on the development and utilization of the Uganda district league table. Quantitative data were accessed from the Ministry of Health databases. Statistical analysis using SPSS version 20 and hierarchical cluster analysis, utilizing Wards' method was used. The hierarchical cluster analysis was conducted on the basis of seven clusters determined for each year from 2003 to 2010, ranging from a cluster of good through moderate-to-poor performers. The characteristics and membership of clusters varied from year to year and were determined by the identity and magnitude of performance of the individual variables. Criticisms of the league table include: perceived unfairness, as it did not take into consideration district peculiarities; and being oversummarized and not adequately informative. Clustering organizes the many data points into clusters of similar entities according to an agreed set of indicators and can provide the beginning point for identifying factors behind the observed performance of districts. Although league table ranking emphasize summation and external control, clustering has the potential to encourage a formative, learning approach. More research is required to shed more light on factors behind observed performance of the different clusters. Other countries especially low-income countries that share many similarities with Uganda can learn from these experiences. © The Author 2015

  16. Evaluation of the hierarchical control of distributed Energy Storage Systems in islanded Microgrids based on Std IEC/ISO 62264

    DEFF Research Database (Denmark)

    Palizban, Omid; Kauhaniemi, Kimmo; Guerrero, Josep M.

    2016-01-01

    In this paper, a decentralized control methodology based on hierarchical control levels is investigated. In recent years, efforts have been made to standardize microgrids (MGs), and the decentralized control method evaluated here is based on the IEC/ISO 62264 standard. Since the main challenge...... proportionally and directly proportionally, respectively, to the state of charge (SoC) of each battery unit during discharging and charging mode. To evaluate this decentralized method based on the IEC/ISO 62264 standard, PSCAD/EMTDC software is used....

  17. Expression of Streptococcus pneumoniae Bacteriocins Is Induced by Antibiotics via Regulatory Interplay with the Competence System.

    Science.gov (United States)

    Kjos, Morten; Miller, Eric; Slager, Jelle; Lake, Frank B; Gericke, Oliver; Roberts, Ian S; Rozen, Daniel E; Veening, Jan-Willem

    2016-02-01

    Pneumococcal bacteriocins (pneumocins) are antibacterial toxins that mediate intra-species competition within the human host. However, the triggers of pneumocin expression are poorly understood. Using RNA-sequencing, we mapped the regulon of the pneumocin cluster (blp) of Streptococcus pneumoniae D39. Furthermore, by analogy with pneumococcal competence, we show that several antibiotics activate the blp-genes. Using real-time gene expression measurements we show that while the promoter driving expression of the two-component regulatory system blpR/H is constitutive, the remaining blp-promoters that control pneumocin expression, immunity and the inducer peptide BlpC, are pH-dependent and induced in the late exponential phase. Intriguingly, competence for genetic transformation, mediated by the paralogous ComD/E two-component quorum system, is induced by the same environmental cues. To test for interplay between these regulatory systems, we quantified the regulatory response to the addition of synthetic BlpC and competence-stimulating peptide (CSP). Supporting the idea of such interplay, we found that immediately upon addition of CSP, the blp-promoters were activated in a comD/E-dependent manner. After a delay, blp-expression was highly induced and was strictly dependent on blpRH and blpC. This raised the question of the mechanism of BlpC export, since bioinformatic analysis showed that the genes encoding the putative exporter for BlpC, blpAB, are not intact in strain D39 and most other strains. By contrast, all sequenced pneumococcal strains contain intact comAB genes, encoding the transport system for CSP. Consistent with the idea that comAB mediate BlpC export, we finally show that high-level expression of the blp-genes requires comAB. Together, our results demonstrate that regulation of pneumocin expression is intertwined with competence, explaining why certain antibiotics induce blp-expression. Antibiotic-induced pneumocin expression might therefore have

  18. Composition and abstraction of logical regulatory modules: application to multicellular systems.

    Science.gov (United States)

    Mendes, Nuno D; Lang, Frédéric; Le Cornec, Yves-Stan; Mateescu, Radu; Batt, Gregory; Chaouiya, Claudine

    2013-03-15

    Logical (Boolean or multi-valued) modelling is widely used to study regulatory or signalling networks. Even though these discrete models constitute a coarse, yet useful, abstraction of reality, the analysis of large networks faces a classical combinatorial problem. Here, we propose to take advantage of the intrinsic modularity of inter-cellular networks to set up a compositional procedure that enables a significant reduction of the dynamics, yet preserving the reachability of stable states. To that end, we rely on process algebras, a well-established computational technique for the specification and verification of interacting systems. We develop a novel compositional approach to support the logical modelling of interconnected cellular networks. First, we formalize the concept of logical regulatory modules and their composition. Then, we make this framework operational by transposing the composition of logical modules into a process algebra framework. Importantly, the combination of incremental composition, abstraction and minimization using an appropriate equivalence relation (here the safety equivalence) yields huge reductions of the dynamics. We illustrate the potential of this approach with two case-studies: the Segment-Polarity and the Delta-Notch modules.

  19. A method for developing regulatory gene set networks to characterize complex biological systems.

    Science.gov (United States)

    Suphavilai, Chayaporn; Zhu, Liugen; Chen, Jake Y

    2015-01-01

    Traditional approaches to studying molecular networks are based on linking genes or proteins. Higher-level networks linking gene sets or pathways have been proposed recently. Several types of gene set networks have been used to study complex molecular networks such as co-membership gene set networks (M-GSNs) and co-enrichment gene set networks (E-GSNs). Gene set networks are useful for studying biological mechanism of diseases and drug perturbations. In this study, we proposed a new approach for constructing directed, regulatory gene set networks (R-GSNs) to reveal novel relationships among gene sets or pathways. We collected several gene set collections and high-quality gene regulation data in order to construct R-GSNs in a comparative study with co-membership gene set networks (M-GSNs). We described a method for constructing both global and disease-specific R-GSNs and determining their significance. To demonstrate the potential applications to disease biology studies, we constructed and analysed an R-GSN specifically built for Alzheimer's disease. R-GSNs can provide new biological insights complementary to those derived at the protein regulatory network level or M-GSNs. When integrated properly to functional genomics data, R-GSNs can help enable future research on systems biology and translational bioinformatics.

  20. Problem of two-level hierarchical minimax program control the final state of regional social and economic system with incomplete information

    Science.gov (United States)

    Shorikov, A. F.

    2016-12-01

    In this article we consider a discrete-time dynamical system consisting of a set a controllable objects (region and forming it municipalities). The dynamics each of these is described by the corresponding linear or nonlinear discrete-time recurrent vector relations and its control system consist from two levels: basic level (control level I) that is dominating level and auxiliary level (control level II) that is subordinate level. Both levels have different criterions of functioning and united by information and control connections which defined in advance. In this article we study the problem of optimization of guaranteed result for program control by the final state of regional social and economic system in the presence of risks vectors. For this problem we propose a mathematical model in the form of two-level hierarchical minimax program control problem of the final states of this system with incomplete information and the general scheme for its solving.

  1. 层级式可视化并行程序建模系统研究%Research of Hierarchical Visual Modeling System for Parallel Programs

    Institute of Scientific and Technical Information of China (English)

    徐祯; 孙济洲; 于策; 孙超; 汤善江

    2011-01-01

    The visual modeling technology can reduce the difficulty of the design of parallel programs effectively, the complex hardware architecture still puts forward new challenges on the parallel program design method on the software level.To solve these issues, this paper proposes a visual modeling methodology based on the hierarchical idea and an hierarchical modeling scheme for parallel programs, and designs and implements a modeling system called e-ParaModel for multi-core cluster environments.A modeling paradigm to verify the system's feasibility and applicability is completed.%可视化建模技术虽能降低并行程序设计的难度,但复杂的硬件结构仍使软件层面上的并行程序设计方法存在一定难度.为此,提出一种基于层级式建模思想的并行程序可视化建模方法和分层建模方案,设计和实现一个面向多层次集群环境的可视化建模系统e-ParaModel,用建模实例验证其可行性和实用性.

  2. 基于串行及并行恢复的电力系统重构%Power System Reconstruction Based on Hierarchical and Partitioned Restoration

    Institute of Scientific and Technical Information of China (English)

    赵腾; 张焰; 张志强

    2015-01-01

    The research on system reconstruction after blackout is of great significance for fast and safe system restoration.The hierarchical and partitioned restoration concept is elaborated from a new perspective, and a new system reconstruction algorithm is proposed based on hierarchical and partitioned restoration.The algorithm uses the way of stepwise searching optimization,and takes the balance of power and the importance degree of target nodes in the system restoring process into consideration dynamically.The topology of reconstruction network is integrally optimized in the hierarchical restoring process on the basis of ensuring the flexibility of the reconstruction plan,and the partition distance sensitivity index is introduced to provide quantitative references for effective coordination between different subsystems in the partitioned restoring process.The power flow constraints of the target system in each step are checked to ensure the feasibility of the reconstruction plan.The effectiveness of this algorithm is verified by the calculation results of an IEEE 1 18-bus system and the East China power system.%研究大停电后的电力系统重构问题对于系统的快速安全恢复有着重要意义。文中在对大停电后电力系统串行及并行恢复概念进行新的阐述的基础上,提出一种基于串行和并行恢复的系统重构优化算法。该算法采用分步探索寻优方式,动态地考虑系统恢复过程中的功率平衡以及目标节点在网络中的重要程度等问题,在保证重构方案灵活性的基础上对串行恢复过程中重构网架的拓扑结构进行整体优化,引入分区距离灵敏度指标为并行恢复过程中各子系统间的有效配合提供定量参考,并对每一步得到的目标系统进行潮流校验以保证重构方案的可行性。以 IEEE 118节点系统和华东电网为例验证了算法的有效性。

  3. CoRoT LRa02_E2_0121: Neptune-size planet candidate turns into a hierarchical triple system with a giant primary

    CERN Document Server

    Tal-Or, L; Mazeh, T; Bouchy, F; Moutou, C; Alonso, R; Gandolfi, D; Aigrain, S; Auvergne, M; Barge, P; Bonomo, A S; Borde, P; Deeg, H; Ferraz-Mello, S; Deleuil, M; Dvorak, R; Erikson, A; Fridlund, M; Gillon, M; Guenther, E W; Guillot, T; Hatzes, A; Jorda, L; Lammer, H; Leger, A; Llebaria, A; Ollivier, M; Patzold, M; Queloz, D; Rauer, H; Rouan, D; Tsodikovich, Y; Wuchterl, G

    2011-01-01

    This paper presents the case of CoRoT LRa02_E2_0121, which was initially classified as a Neptune-size transiting-planet candidate on a relatively wide orbit of 36.3 days. Follow-up observations were performed with UVES, Sandiford, SOPHIE and HARPS. These observations revealed a faint companion in the spectra. To find the true nature of the system we derived the radial velocities of the faint companion using TODMOR - a two-dimensional correlation technique, applied to the SOPHIE spectra. Modeling the lightcurve with EBAS we discovered a secondary eclipse with a depth of ~0.07%, indicating a diluted eclipsing binary. Combined MCMC modeling of the lightcurve and the radial velocities suggested that CoRoT LRa02_E2_0121 is a hierarchical triple system with an evolved G-type primary and an A-type:F-type grazing eclipsing binary. Such triple systems are difficult to discover.

  4. Repetitive pertussis toxin promotes development of regulatory T cells and prevents central nervous system autoimmune disease.

    Directory of Open Access Journals (Sweden)

    Martin S Weber

    Full Text Available Bacterial and viral infections have long been implicated in pathogenesis and progression of multiple sclerosis (MS. Incidence and severity of its animal model experimental autoimmune encephalomyelitis (EAE can be enhanced by concomitant administration of pertussis toxin (PTx, the major virulence factor of Bordetella pertussis. Its adjuvant effect at the time of immunization with myelin antigen is attributed to an unspecific activation and facilitated migration of immune cells across the blood brain barrier into the central nervous system (CNS. In order to evaluate whether recurring exposure to bacterial antigen may have a differential effect on development of CNS autoimmunity, we repetitively administered PTx prior to immunization. Mice weekly injected with PTx were largely protected from subsequent EAE induction which was reflected by a decreased proliferation and pro-inflammatory differentiation of myelin-reactive T cells. Splenocytes isolated from EAE-resistant mice predominantly produced IL-10 upon re-stimulation with PTx, while non-specific immune responses were unchanged. Longitudinal analyses revealed that repetitive exposure of mice to PTx gradually elevated serum levels for TGF-β and IL-10 which was associated with an expansion of peripheral CD4(+CD25(+FoxP3(+ regulatory T cells (Treg. Increased frequency of Treg persisted upon immunization and thereafter. Collectively, these data suggest a scenario in which repetitive PTx treatment protects mice from development of CNS autoimmune disease through upregulation of regulatory cytokines and expansion of CD4(+CD25(+FoxP3(+ Treg. Besides its therapeutic implication, this finding suggests that encounter of the immune system with microbial products may not only be part of CNS autoimmune disease pathogenesis but also of its regulation.

  5. Regulatory T-cell stability and plasticity in mucosal and systemic immune systems

    Science.gov (United States)

    Murai, M; Krause, P; Cheroutre, H; Kronenberg, M

    2010-01-01

    Regulatory T cells (Treg) express the forkhead box p3 (Foxp3) transcription factor and suppress pathological immune responses against self and foreign antigens, including commensal microorganisms. Foxp3 has been proposed as a master key regulator for Treg, required for their differentiation, maintenance, and suppressive functions. Two types of Treg have been defined. Natural Treg (nTreg) are usually considered to be a separate sublineage arising during thymus differentiation. Induced Treg (iTreg) originate upon T cell receptor (TCR) stimulation in the presence of tumor growth factor β. Although under homeostatic conditions most Treg in the periphery are nTreg, special immune challenges in the intestine promote more frequently the generation of iTreg. Furthermore, recent observations have challenged the notion that Treg are a stable sublineage, and they suggest that, particularly under lymphopenic and/or inflammatory conditions, Treg may lose Foxp3 and/or acquire diverse effector functions, especially in the intestine, which may contribute to uncontrolled inflammation. PMID:20505662

  6. Onboard hierarchical network

    Science.gov (United States)

    Tunesi, Luca; Armbruster, Philippe

    2004-02-01

    The objective of this paper is to demonstrate a suitable hierarchical networking solution to improve capabilities and performances of space systems, with significant recurrent costs saving and more efficient design & manufacturing flows. Classically, a satellite can be split in two functional sub-systems: the platform and the payload complement. The platform is in charge of providing power, attitude & orbit control and up/down-link services, whereas the payload represents the scientific and/or operational instruments/transponders and embodies the objectives of the mission. One major possibility to improve the performance of payloads, by limiting the data return to pertinent information, is to process data on board thanks to a proper implementation of the payload data system. In this way, it is possible to share non-recurring development costs by exploiting a system that can be adopted by the majority of space missions. It is believed that the Modular and Scalable Payload Data System, under development by ESA, provides a suitable solution to fulfil a large range of future mission requirements. The backbone of the system is the standardised high data rate SpaceWire network http://www.ecss.nl/. As complement, a lower speed command and control bus connecting peripherals is required. For instance, at instrument level, there is a need for a "local" low complexity bus, which gives the possibility to command and control sensors and actuators. Moreover, most of the connections at sub-system level are related to discrete signals management or simple telemetry acquisitions, which can easily and efficiently be handled by a local bus. An on-board hierarchical network can therefore be defined by interconnecting high-speed links and local buses. Additionally, it is worth stressing another important aspect of the design process: Agencies and ESA in particular are frequently confronted with a big consortium of geographically spread companies located in different countries, each one

  7. Interferon regulatory factor 5 gene polymorphism in Egyptian children with systemic lupus erythematosus.

    Science.gov (United States)

    Hammad, A; Mossad, Y M; Nasef, N; Eid, R

    2017-01-01

    Background Increased expression of interferon-inducible genes is implicated in the pathogenesis of systemic lupus erythematosus (SLE). Interferon regulatory factor 5 (IRF5) is one of the transcription factors regulating interferon and was proved to be implicated in the pathogenesis of SLE in different populations. Objectives The objective of this study was to investigate the correlation between polymorphisms of the IRF5 gene and SLE susceptibility in a cohort of Egyptian children and to investigate their association with clinico-pathological features, especially lupus nephritis. Subjects and methods Typing of interferon regulatory factor 5 rs10954213, rs2004640 and rs2280714 polymorphisms were done using polymerase chain reaction-restriction fragment length polymorphism for 100 children with SLE and 100 matched healthy controls. Results Children with SLE had more frequent T allele and TT genotype of rs2004640 ( Pc = 0.003 and 0.024, respectively) compared to controls. Patients with nephritis had more frequent T allele of rs2004640 compared to controls ( Pc = 0.003). However the allele and genotype frequencies of the three studied polymorphisms did not show any difference in patients with nephritis in comparison to those without nephritis. Haplotype GTA of rs10954213, rs2004640 and rs2280714, respectively, was more frequent in lupus patients in comparison to controls ( p = 0.01) while the haplotype GGG was more frequent in controls than lupus patients ( p = 0.011). Conclusion The rs2004640 T allele and TT genotype and GTA haplotype of rs rs10954213, rs2004640, and rs2280714, respectively, can be considered as risk factors for the development of SLE. The presence of the rs2004640 T allele increases the risk of nephritis development in Egyptian children with SLE.

  8. A cellular and regulatory map of the GABAergic nervous system of C. elegans

    Science.gov (United States)

    Gendrel, Marie; Atlas, Emily G; Hobert, Oliver

    2016-01-01

    Neurotransmitter maps are important complements to anatomical maps and represent an invaluable resource to understand nervous system function and development. We report here a comprehensive map of neurons in the C. elegans nervous system that contain the neurotransmitter GABA, revealing twice as many GABA-positive neuron classes as previously reported. We define previously unknown glia-like cells that take up GABA, as well as 'GABA uptake neurons' which do not synthesize GABA but take it up from the extracellular environment, and we map the expression of previously uncharacterized ionotropic GABA receptors. We use the map of GABA-positive neurons for a comprehensive analysis of transcriptional regulators that define the GABA phenotype. We synthesize our findings of specification of GABAergic neurons with previous reports on the specification of glutamatergic and cholinergic neurons into a nervous system-wide regulatory map which defines neurotransmitter specification mechanisms for more than half of all neuron classes in C. elegans. DOI: http://dx.doi.org/10.7554/eLife.17686.001 PMID:27740909

  9. The regulatory system for diabetes mellitus: Modeling rates of glucose infusions and insulin injections

    Science.gov (United States)

    Yang, Jin; Tang, Sanyi; Cheke, Robert A.

    2016-08-01

    Novel mathematical models with open and closed-loop control for type 1 or type 2 diabetes mellitus were developed to improve understanding of the glucose-insulin regulatory system. A hybrid impulsive glucose-insulin model with different frequencies of glucose infusions and insulin injections was analyzed, and the existence and uniqueness of the positive periodic solution for type 1 diabetes, which is globally asymptotically stable, was studied analytically. Moreover, permanence of the system for type 2 diabetes was demonstrated which showed that the glucose concentration level is uniformly bounded above and below. To investigate how to prevent hyperinsulinemia and hyperglycemia being caused by this system, we developed a model involving periodic intakes of glucose with insulin injections applied only when the blood glucose level reached a given critical glucose threshold. In addition, our numerical analysis revealed that the period, the frequency and the dose of glucose infusions and insulin injections are crucial for insulin therapies, and the results provide clinical strategies for insulin-administration practices.

  10. Intercellular network structure and regulatory motifs in the human hematopoietic system.

    Science.gov (United States)

    Qiao, Wenlian; Wang, Weijia; Laurenti, Elisa; Turinsky, Andrei L; Wodak, Shoshana J; Bader, Gary D; Dick, John E; Zandstra, Peter W

    2014-07-15

    The hematopoietic system is a distributed tissue that consists of functionally distinct cell types continuously produced through hematopoietic stem cell (HSC) differentiation. Combining genomic and phenotypic data with high-content experiments, we have built a directional cell-cell communication network between 12 cell types isolated from human umbilical cord blood. Network structure analysis revealed that ligand production is cell type dependent, whereas ligand binding is promiscuous. Consequently, additional control strategies such as cell frequency modulation and compartmentalization were needed to achieve specificity in HSC fate regulation. Incorporating the in vitro effects (quiescence, self-renewal, proliferation, or differentiation) of 27 HSC binding ligands into the topology of the cell-cell communication network allowed coding of cell type-dependent feedback regulation of HSC fate. Pathway enrichment analysis identified intracellular regulatory motifs enriched in these cell type- and ligand-coupled responses. This study uncovers cellular mechanisms of hematopoietic cell feedback in HSC fate regulation, provides insight into the design principles of the human hematopoietic system, and serves as a foundation for the analysis of intercellular regulation in multicellular systems.

  11. The Insulin Regulatory Network in Adult Hippocampus and Pancreatic Endocrine System

    Directory of Open Access Journals (Sweden)

    Masanao Machida

    2012-01-01

    Full Text Available There is a very strong correlation between the insulin-mediated regulatory system of the central nervous system and the pancreatic endocrine system. There are many examples of the same transcriptional factors being expressed in both regions in their embryonic development stages. Hormonal signals from the pancreatic islets influence the regulation of energy homeostasis by the brain, and the brain in turn influences the secretions of the islets. Diabetes induces neuronal death in different regions of the brain especially hippocampus, causes alterations on the neuronal circuits and therefore impairs learning and memory, for which the hippocampus is responsible. The hippocampus is a region of the brain where steady neurogenesis continues throughout life. Adult neurogenesis from undifferentiated neural stem cells is greatly decreased in diabetic patients, and as a result their learning and memory functions decline. Might it be possible to reactivate stem cells whose functions have deteriorated and that are present in the tissues in which the lesions occur in diabetes, a lifestyle disease, which plagues modern humans and develops as a result of the behavior of insulin-related factor? In this paper we summarize research in regard to these matters based on examples in recent years.

  12. Regulatory and Functional Aspects of Indolic Metabolism in Plant Systemic Acquired Resistance.

    Science.gov (United States)

    Stahl, Elia; Bellwon, Patricia; Huber, Stefan; Schlaeppi, Klaus; Bernsdorff, Friederike; Vallat-Michel, Armelle; Mauch, Felix; Zeier, Jürgen

    2016-05-02

    Tryptophan-derived, indolic metabolites possess diverse functions in Arabidopsis innate immunity to microbial pathogen infection. Here, we investigate the functional role and regulatory characteristics of indolic metabolism in Arabidopsis systemic acquired resistance (SAR) triggered by the bacterial pathogen Pseudomonas syringae. Indolic metabolism is broadly activated in both P. syringae-inoculated and distant, non-inoculated leaves. At inoculation sites, camalexin, indol-3-ylmethylamine (I3A), and indole-3-carboxylic acid (ICA) are the major accumulating compounds. Camalexin accumulation is positively affected by MYB122, and the cytochrome P450 genes CYP81F1 and CYP81F2. Local I3A production, by contrast, occurs via indole glucosinolate breakdown by PEN2- dependent and independent pathways. Moreover, exogenous application of the defense hormone salicylic acid stimulates I3A generation at the expense of its precursor indol-3-ylmethylglucosinolate (I3M), and the SAR regulator pipecolic acid primes plants for enhanced P. syringae-induced activation of distinct branches of indolic metabolism. In uninfected systemic tissue, the metabolic response is more specific and associated with enhanced levels of the indolics I3A, ICA, and indole-3-carbaldehyde (ICC). Systemic indole accumulation fully depends on functional CYP79B2/3, PEN2, and MYB34/51/122, and requires functional SAR signaling. Genetic analyses suggest that systemically elevated indoles are dispensable for SAR and associated systemic increases of salicylic acid. However, soil-grown but not hydroponically -cultivated cyp79b2/3 and pen2 plants, both defective in indolic secondary metabolism, exhibit pre-induced immunity, which abrogates their intrinsic ability to induce SAR.

  13. The Campylobacter jejuni CprRS two-component regulatory system regulates aspects of the cell envelope

    Science.gov (United States)

    As a leading cause of foodborne bacterial gastroenteritis, Campylobacter jejuni is a significant human pathogen. C. jejuni lives commensally in the gastrointestinal tract of animals, but tolerates variable environments during transit to a susceptible host. A two-component regulatory system, CprRS, w...

  14. What makes the lac-pathway switch : identifying the fluctuations that trigger phenotype switching in gene regulatory systems

    NARCIS (Netherlands)

    Bhogale, Prasanna M; Sorg, Robin A; Veening, Jan-Willem; Berg, Johannes

    2014-01-01

    Multistable gene regulatory systems sustain different levels of gene expression under identical external conditions. Such multistability is used to encode phenotypic states in processes including nutrient uptake and persistence in bacteria, fate selection in viral infection, cell-cycle control and d

  15. Investigating relationship between self- and co-regulatory learning processes in a workplace e-learning system

    NARCIS (Netherlands)

    Rahimi, E.; Tampinongkol, S.; Sedighi, M.; Van den Berg, J.; Veen, W.

    2014-01-01

    While supporting regulatory learning processes in work environments is increasingly becoming important, there is not a clear picture of the interaction between self- and coregulatory processes performed by learners in workplace e-learning systems. In this paper, by following a design-based research

  16. Modelling the regulatory system for diabetes mellitus with a threshold window

    Science.gov (United States)

    Yang, Jin; Tang, Sanyi; Cheke, Robert A.

    2015-05-01

    Piecewise (or non-smooth) glucose-insulin models with threshold windows for type 1 and type 2 diabetes mellitus are proposed and analyzed with a view to improving understanding of the glucose-insulin regulatory system. For glucose-insulin models with a single threshold, the existence and stability of regular, virtual, pseudo-equilibria and tangent points are addressed. Then the relations between regular equilibria and a pseudo-equilibrium are studied. Furthermore, the sufficient and necessary conditions for the global stability of regular equilibria and the pseudo-equilibrium are provided by using qualitative analysis techniques of non-smooth Filippov dynamic systems. Sliding bifurcations related to boundary node bifurcations were investigated with theoretical and numerical techniques, and insulin clinical therapies are discussed. For glucose-insulin models with a threshold window, the effects of glucose thresholds or the widths of threshold windows on the durations of insulin therapy and glucose infusion were addressed. The duration of the effects of an insulin injection is sensitive to the variation of thresholds. Our results indicate that blood glucose level can be maintained within a normal range using piecewise glucose-insulin models with a single threshold or a threshold window. Moreover, our findings suggest that it is critical to individualise insulin therapy for each patient separately, based on initial blood glucose levels.

  17. PreImplantation factor (PIF*) regulates systemic immunity and targets protective regulatory and cytoskeleton proteins.

    Science.gov (United States)

    Barnea, Eytan R; Hayrabedyan, Soren; Todorova, Krassimira; Almogi-Hazan, Osnat; Or, Reuven; Guingab, Joy; McElhinney, James; Fernandez, Nelson; Barder, Timothy

    2016-07-01

    Secreted by viable embryos, PIF is expressed by the placenta and found in maternal circulation. It promotes implantation and trophoblast invasion, achieving systemic immune homeostasis. Synthetic PIF successfully transposes endogenous PIF features to non-pregnant immune and transplant models. PIF affects innate and activated PBMC cytokines and genes expression. We report that PIF targets similar proteins in CD14+, CD4+ and CD8+ cells instigating integrated immune regulation. PIF-affinity chromatography followed by mass-spectrometry, pathway and heatmap analysis reveals that SET-apoptosis inhibitor, vimentin, myosin-9 and calmodulin are pivotal for immune regulation. PIF acts on macrophages down-stream of LPS (lipopolysaccharide-bacterial antigen) CD14/TLR4/MD2 complex, targeting myosin-9, thymosin-α1 and 14-3-3eta. PIF mainly targets platelet aggregation in CD4+, and skeletal proteins in CD8+ cells. Pathway analysis demonstrates that PIF targets and regulates SET, tubulin, actin-b, and S100 genes expression. PIF targets systemic immunity and has a short circulating half-life. Collectively, PIF targets identified; protective, immune regulatory and cytoskeleton proteins reveal mechanisms involved in the observed efficacy against immune disorders. Copyright © 2016 Elsevier GmbH. All rights reserved.

  18. Motivational cues predict the defensive system in team handball: A model based on regulatory focus theory.

    Science.gov (United States)

    Debanne, T; Laffaye, G

    2015-08-01

    This study was based on the naturalistic decision-making paradigm and regulatory focus theory. Its aim was to model coaches' decision-making processes for handball teams' defensive systems based on relevant cues of the reward structure, and to determine the weight of each of these cues. We collected raw data by video-recording 41 games that were selected using a simple random method. We considered the defensive strategy (DEF: aligned or staged) to be the dependent variable, and the three independent variables were (a) numerical difference between the teams; (b) score difference between the teams; and (c) game periods. We used a logistic regression design (logit model) and a multivariate logistic model to explain the link between DEF and the three category independent variables. Each factor was weighted differently during the decision-making process to select the defensive system, and combining these variables increased the impact on this process; for instance, a staged defense is 43 times more likely to be chosen during the final period in an unfavorable situation and in a man advantage. Finally, this shows that the coach's decision-making process could be based on a simple match or could require a diagnosis of the situation based on the relevant cues.

  19. Micromechanics of hierarchical materials

    DEFF Research Database (Denmark)

    Mishnaevsky, Leon, Jr.

    2012-01-01

    A short overview of micromechanical models of hierarchical materials (hybrid composites, biomaterials, fractal materials, etc.) is given. Several examples of the modeling of strength and damage in hierarchical materials are summarized, among them, 3D FE model of hybrid composites...... with nanoengineered matrix, fiber bundle model of UD composites with hierarchically clustered fibers and 3D multilevel model of wood considered as a gradient, cellular material with layered composite cell walls. The main areas of research in micromechanics of hierarchical materials are identified, among them......, the investigations of the effects of load redistribution between reinforcing elements at different scale levels, of the possibilities to control different material properties and to ensure synergy of strengthening effects at different scale levels and using the nanoreinforcement effects. The main future directions...

  20. Introduction into Hierarchical Matrices

    KAUST Repository

    Litvinenko, Alexander

    2013-12-05

    Hierarchical matrices allow us to reduce computational storage and cost from cubic to almost linear. This technique can be applied for solving PDEs, integral equations, matrix equations and approximation of large covariance and precision matrices.

  1. Applied Bayesian Hierarchical Methods

    CERN Document Server

    Congdon, Peter D

    2010-01-01

    Bayesian methods facilitate the analysis of complex models and data structures. Emphasizing data applications, alternative modeling specifications, and computer implementation, this book provides a practical overview of methods for Bayesian analysis of hierarchical models.

  2. Programming with Hierarchical Maps

    DEFF Research Database (Denmark)

    Ørbæk, Peter

    This report desribes the hierarchical maps used as a central data structure in the Corundum framework. We describe its most prominent features, ague for its usefulness and briefly describe some of the software prototypes implemented using the technology....

  3. Catalysis with hierarchical zeolites

    DEFF Research Database (Denmark)

    Holm, Martin Spangsberg; Taarning, Esben; Egeblad, Kresten

    2011-01-01

    Hierarchical (or mesoporous) zeolites have attracted significant attention during the first decade of the 21st century, and so far this interest continues to increase. There have already been several reviews giving detailed accounts of the developments emphasizing different aspects of this research...... topic. Until now, the main reason for developing hierarchical zeolites has been to achieve heterogeneous catalysts with improved performance but this particular facet has not yet been reviewed in detail. Thus, the present paper summaries and categorizes the catalytic studies utilizing hierarchical...... zeolites that have been reported hitherto. Prototypical examples from some of the different categories of catalytic reactions that have been studied using hierarchical zeolite catalysts are highlighted. This clearly illustrates the different ways that improved performance can be achieved with this family...

  4. Angelic Hierarchical Planning: Optimal and Online Algorithms

    Science.gov (United States)

    2008-12-06

    restrict our attention to plans in I∗(Act, s0). Definition 2. ( Parr and Russell , 1998) A plan ah∗ is hierarchically optimal iff ah∗ = argmina∈I∗(Act,s0):T...Murdock, Dan Wu, and Fusun Yaman. SHOP2: An HTN planning system. JAIR, 20:379–404, 2003. Ronald Parr and Stuart Russell . Reinforcement Learning with...Angelic Hierarchical Planning: Optimal and Online Algorithms Bhaskara Marthi Stuart J. Russell Jason Wolfe Electrical Engineering and Computer

  5. Circuitry Linking the Catabolite Repression and Csr Global Regulatory Systems of Escherichia coli.

    Science.gov (United States)

    Pannuri, Archana; Vakulskas, Christopher A; Zere, Tesfalem; McGibbon, Louise C; Edwards, Adrianne N; Georgellis, Dimitris; Babitzke, Paul; Romeo, Tony

    2016-11-01

    Cyclic AMP (cAMP) and the cAMP receptor protein (cAMP-CRP) and CsrA are the principal regulators of the catabolite repression and carbon storage global regulatory systems, respectively. cAMP-CRP controls the transcription of genes for carbohydrate metabolism and other processes in response to carbon nutritional status, while CsrA binds to diverse mRNAs and regulates translation, RNA stability, and/or transcription elongation. CsrA also binds to the regulatory small RNAs (sRNAs) CsrB and CsrC, which antagonize its activity. The BarA-UvrY two-component signal transduction system (TCS) directly activates csrB and csrC (csrB/C) transcription, while CsrA does so indirectly. We show that cAMP-CRP inhibits csrB/C transcription without negatively regulating phosphorylated UvrY (P-UvrY) or CsrA levels. A crp deletion caused an elevation in CsrB/C levels in the stationary phase of growth and increased the expression of csrB-lacZ and csrC-lacZ transcriptional fusions, although modest stimulation of CsrB/C turnover by the crp deletion partially masked the former effects. DNase I footprinting and other studies demonstrated that cAMP-CRP bound specifically to three sites located upstream from the csrC promoter, two of which overlapped the P-UvrY binding site. These two proteins competed for binding at the overlapping sites. In vitro transcription-translation experiments confirmed direct repression of csrC-lacZ expression by cAMP-CRP. In contrast, cAMP-CRP effects on csrB transcription may be mediated indirectly, as it bound nonspecifically to csrB DNA. In the reciprocal direction, CsrA bound to crp mRNA with high affinity and specificity and yet exhibited only modest, conditional effects on expression. Our findings are incorporated into an emerging model for the response of Csr circuitry to carbon nutritional status.

  6. Application of the analytic hierarchic process in analysis motivation system of a transport firm Wykorzystanie analitycznego procesu hierarchicznego w analizie systemu motywacyjnego przedsiębiorstwa transportowego

    Directory of Open Access Journals (Sweden)

    Feliks Wysocki

    2008-12-01

    Full Text Available Motivation of employees is the main element of management in firm. For this reason identification of the most important factors of motivation in firm is very important. These factors support employees to work more effectively and simultaneously secure satisfaction of work for themselves. The factors of motivation and their intensity of motiva-tion are main elements in construction of motivation system. The paper is an attempt of application of the Analytic Hierarchic Process (AHP in decision making in economics and organization of firm. The AHP method has been used for the first time to work out models of motivation of employees in a firm. This method is useful in the process of motivation of employees. Its essence, concepts and rules of implementation have been presented in detail. This approach is a complex procedure, which appears to be useful for decision making relating to development of firms.

  7. Hierarchical matrices algorithms and analysis

    CERN Document Server

    Hackbusch, Wolfgang

    2015-01-01

    This self-contained monograph presents matrix algorithms and their analysis. The new technique enables not only the solution of linear systems but also the approximation of matrix functions, e.g., the matrix exponential. Other applications include the solution of matrix equations, e.g., the Lyapunov or Riccati equation. The required mathematical background can be found in the appendix. The numerical treatment of fully populated large-scale matrices is usually rather costly. However, the technique of hierarchical matrices makes it possible to store matrices and to perform matrix operations approximately with almost linear cost and a controllable degree of approximation error. For important classes of matrices, the computational cost increases only logarithmically with the approximation error. The operations provided include the matrix inversion and LU decomposition. Since large-scale linear algebra problems are standard in scientific computing, the subject of hierarchical matrices is of interest to scientists ...

  8. Hierarchical Cont-Bouchaud model

    CERN Document Server

    Paluch, Robert; Holyst, Janusz A

    2015-01-01

    We extend the well-known Cont-Bouchaud model to include a hierarchical topology of agent's interactions. The influence of hierarchy on system dynamics is investigated by two models. The first one is based on a multi-level, nested Erdos-Renyi random graph and individual decisions by agents according to Potts dynamics. This approach does not lead to a broad return distribution outside a parameter regime close to the original Cont-Bouchaud model. In the second model we introduce a limited hierarchical Erdos-Renyi graph, where merging of clusters at a level h+1 involves only clusters that have merged at the previous level h and we use the original Cont-Bouchaud agent dynamics on resulting clusters. The second model leads to a heavy-tail distribution of cluster sizes and relative price changes in a wide range of connection densities, not only close to the percolation threshold.

  9. Hierarchical self-organization of non-cooperating individuals.

    Directory of Open Access Journals (Sweden)

    Tamás Nepusz

    Full Text Available Hierarchy is one of the most conspicuous features of numerous natural, technological and social systems. The underlying structures are typically complex and their most relevant organizational principle is the ordering of the ties among the units they are made of according to a network displaying hierarchical features. In spite of the abundant presence of hierarchy no quantitative theoretical interpretation of the origins of a multi-level, knowledge-based social network exists. Here we introduce an approach which is capable of reproducing the emergence of a multi-levelled network structure based on the plausible assumption that the individuals (representing the nodes of the network can make the right estimate about the state of their changing environment to a varying degree. Our model accounts for a fundamental feature of knowledge-based organizations: the less capable individuals tend to follow those who are better at solving the problems they all face. We find that relatively simple rules lead to hierarchical self-organization and the specific structures we obtain possess the two, perhaps most important features of complex systems: a simultaneous presence of adaptability and stability. In addition, the performance (success score of the emerging networks is significantly higher than the average expected score of the individuals without letting them copy the decisions of the others. The results of our calculations are in agreement with a related experiment and can be useful from the point of designing the optimal conditions for constructing a given complex social structure as well as understanding the hierarchical organization of such biological structures of major importance as the regulatory pathways or the dynamics of neural networks.

  10. Regulatory agencies and regulatory risk

    OpenAIRE

    Knieps, Günter; Weiß, Hans-Jörg

    2007-01-01

    The aim of this paper is to show that regulatory risk is due to the discretionary behaviour of regulatory agencies, caused by a too extensive regulatory mandate provided by the legislator. The normative point of reference and a behavioural model of regulatory agencies based on the positive theory of regulation are presented. Regulatory risk with regard to the future behaviour of regulatory agencies is modelled as the consequence of the ex ante uncertainty about the relative influence of inter...

  11. Hierarchical Reverberation Mapping

    CERN Document Server

    Brewer, Brendon J

    2013-01-01

    Reverberation mapping (RM) is an important technique in studies of active galactic nuclei (AGN). The key idea of RM is to measure the time lag $\\tau$ between variations in the continuum emission from the accretion disc and subsequent response of the broad line region (BLR). The measurement of $\\tau$ is typically used to estimate the physical size of the BLR and is combined with other measurements to estimate the black hole mass $M_{\\rm BH}$. A major difficulty with RM campaigns is the large amount of data needed to measure $\\tau$. Recently, Fine et al (2012) introduced a new approach to RM where the BLR light curve is sparsely sampled, but this is counteracted by observing a large sample of AGN, rather than a single system. The results are combined to infer properties of the sample of AGN. In this letter we implement this method using a hierarchical Bayesian model and contrast this with the results from the previous stacked cross-correlation technique. We find that our inferences are more precise and allow fo...

  12. A Self-regulatory System of Interlinked Signaling Feedback Loops Controls Mouse Limb Patterning

    Science.gov (United States)

    Benazet, Jean-Denis; Bischofberger, Mirko; Tiecke, Eva; Gonalves, Alexandre; Martin, James F.; Zuniga, Aime; Naef, Felix; Zeller, Rolf

    Developmental pathways need to be robust against environmental and genetic variation to enable reliable morphogenesis. Here, we take a systems biology approach to explain how robustness is achieved in the developing mouse limb, a classical model of organogenesis. By combining quantitative genetics with computational modeling we established a computational model of multiple interlocked feedback modules, involving sonic hedgehog (SHH) morphogen, fibroblast growth factor (FGFs) signaling, bone morphogenetic protein (BMP) and its antagonist GREM1. Earlier modeling work had emphasized the versatile kinetic characteristics of interlocked feedback loops operating at different time scales. Here we develop and then validate a similar computational model to show how BMP4 first initiates and SHH then propagates feedback in the network through differential transcriptional regulation of Grem1 to control digit specification. This switch occurs by linking a fast BMP4/GREM1 module to a slower SHH/GREM1/FGF feedback loop. Simulated gene expression profiles modeled normal limb development as well those of single-gene knockouts. Sensitivity analysis showed how the model was robust and insensitive to variability in parameters. A surprising prediction of the model was that an early Bmp4 signal is essential to kick-start Grem1 expression and the digit specification system. We experimentally validated the prediction using inducible alleles and showed that early, but not late, removal of Bmp4 dramatically disrupted limb development. Sensitivity analysis showed how robustness emerges from this circuitry. This study shows how modeling and computation can help us understand how self-regulatory signaling networks achieve robust regulation of limb development, by exploiting interconnectivity among the three signaling pathways. We expect that similar computational analyses will shed light on the origins of robustness in other developmental systems, and I will discuss some recent examples from

  13. Nuclear Regulatory Authority low energy germanium detection system: performance for the uranium individual monitoring

    Energy Technology Data Exchange (ETDEWEB)

    Spinella, M.R.; Krimer, M.; Rojo, A.M.; Gregori, B.N. [Autoridad Regulatoria Nuclear, Avda. del Libertador 8250, (C1429BNP) Ciudad Autonoma de Buenos Aires (Argentina); Gomez Parada, I. [Sociedad Argentina de Radioproteccion, Avda. del Libertador 8250, (C1429BNP) Ciudad Autonoma de Buenos Aires (Argentina)

    2007-07-01

    The lung counter facility of the Nuclear Regulatory Authority (ARN) is presented. A calibration was carried out using the Lawrence Livermore National Laboratory (LLNL) phantom. This phantom is provided with a pair of lungs and lymph nodes containing uranium homogeneously distributed and a set of four overlay plates covering a chest wall thickness (CWT) ranging from 1.638 to 3.871 cm. Individual organ calibration factors were acquired for {sup 235}U photo-peaks energies and for each effective chest thickness. Using these factors, a collection of theoretical fitting curves were found. A counting efficiency formulae and a curve for simultaneously active lymph nodes and lung was obtained and checked through measures. Background measurements of the chamber with and without volunteer persons were performed in order to obtain the detection limits (DL) of the system. As this task involves the knowledge of the volunteers CWTs, these magnitudes were determined through formulae selected from the literature taking into account the detection system characteristics. The deviation in the CWT assigned to an individual, generated by applying different equations, produces variations up to 33% in the estimations of the incorporated activity and DL. An analysis of the changes in efficiencies as consequences of the detectors locations and CWT was also performed. This reveals that the DL of the camera (detectors, shield and blank phantom) is between 2.7 and 6.4 Bq of {sup 235}U, which implies 4.9 and 11.5 mg lung burden of natural uranium. An estimation of the minimum detectable intake performed with the DL considering blank persons shows that a system with the characteristics described is only adequate for non-routine individual monitoring. (authors)

  14. Detection and reconstruction of error control codes for engineered and biological regulatory systems.

    Energy Technology Data Exchange (ETDEWEB)

    May, Elebeoba Eni; Rintoul, Mark Daniel; Johnston, Anna Marie; Pryor, Richard J.; Hart, William Eugene; Watson, Jean-Paul

    2003-10-01

    A fundamental challenge for all communication systems, engineered or living, is the problem of achieving efficient, secure, and error-free communication over noisy channels. Information theoretic principals have been used to develop effective coding theory algorithms to successfully transmit information in engineering systems. Living systems also successfully transmit biological information through genetic processes such as replication, transcription, and translation, where the genome of an organism is the contents of the transmission. Decoding of received bit streams is fairly straightforward when the channel encoding algorithms are efficient and known. If the encoding scheme is unknown or part of the data is missing or intercepted, how would one design a viable decoder for the received transmission? For such systems blind reconstruction of the encoding/decoding system would be a vital step in recovering the original message. Communication engineers may not frequently encounter this situation, but for computational biologists and biotechnologist this is an immediate challenge. The goal of this work is to develop methods for detecting and reconstructing the encoder/decoder system for engineered and biological data. Building on Sandia's strengths in discrete mathematics, algorithms, and communication theory, we use linear programming and will use evolutionary computing techniques to construct efficient algorithms for modeling the coding system for minimally errored engineered data stream and genomic regulatory DNA and RNA sequences. The objective for the initial phase of this project is to construct solid parallels between biological literature and fundamental elements of communication theory. In this light, the milestones for FY2003 were focused on defining genetic channel characteristics and providing an initial approximation for key parameters, including coding rate, memory length, and minimum distance values. A secondary objective addressed the question of

  15. Hierarchical modularity in human brain functional networks

    CERN Document Server

    Meunier, D; Fornito, A; Ersche, K D; Bullmore, E T; 10.3389/neuro.11.037.2009

    2010-01-01

    The idea that complex systems have a hierarchical modular organization originates in the early 1960s and has recently attracted fresh support from quantitative studies of large scale, real-life networks. Here we investigate the hierarchical modular (or "modules-within-modules") decomposition of human brain functional networks, measured using functional magnetic resonance imaging (fMRI) in 18 healthy volunteers under no-task or resting conditions. We used a customized template to extract networks with more than 1800 regional nodes, and we applied a fast algorithm to identify nested modular structure at several hierarchical levels. We used mutual information, 0 < I < 1, to estimate the similarity of community structure of networks in different subjects, and to identify the individual network that is most representative of the group. Results show that human brain functional networks have a hierarchical modular organization with a fair degree of similarity between subjects, I=0.63. The largest 5 modules at ...

  16. The regulatory effects of Bifidobacterium infantis on the secretomotor activity of the enteric nervous system

    Directory of Open Access Journals (Sweden)

    Najma Javed

    2013-01-01

    Full Text Available Background: Bifidobacterium infantis (BI and other probiotics are non-pathogenic living organisms that have gained increased attention for their possible therapeutic implications on the health of the digestive tract. The mechanisms by which probiotics exert their effects are largely unknown.Aims: This study explored the protective and regulatory effect of oral BI on the enteric nervous system in the 2, 4, 6-trinitrobenzene sulfonic acid-induced colitis rats. Materials and Methods: Electrical field stimulation and chemical stimulation by 5 hydroxytryptamine or serotonin were used to elicit changes in short-circuit current response of the colonic rat tissue. Results: BI-fed colitis rats expressed trends of higher secretomotor activity and revealed signs of decreased macroscopic inflammatory damage when compared to sham-fed colitis rats, suggesting a protective and preventative role of oral BI. Conclusion: These findings may provide additional insights for understanding the prophylactic and therapeutic value of specific probiotics in intestinal inflammatory disorders, offering the possibility of a non-invasive alternative to toxic and immune-compromising drugs.

  17. Ranking system for national regulatory jurisdictions based on pesticide standard values in major exposures

    Directory of Open Access Journals (Sweden)

    Zijian Li

    2017-07-01

    Full Text Available To control the risk of human exposure to pesticides, about 50 nations have promulgated pesticide soil regulatory guidance values (RGVs, and 104 nations have provided pesticide drinking water maximum concentration levels (MCLs. In addition, 90 nations have regulated pesticide agricultural commodity maximum residue limits (MRLs. Pesticide standard values (PSVs for one single pesticide varied in a range of six, seven, or even eight orders of magnitude. Some PSVs are too large to prevent the impact of pesticides on human health. Many nations have not provided PSVs for some commonly used pesticides until now. This research has introduced several completeness values and numerical values methods to evaluate the national jurisdiction’s performance on PSVs on a nation base. The national jurisdiction ranking system developed by these methods will be beneficial to the environmental regulation makers in the management of PSVs. Results also indicate that European countries perform better in the regulation of pesticide soil RGVs, drinking water MCLs, and agricultural commodity MRLs.

  18. Hierarchical control theory and power system automation research%分层递阶控制理论与电力系统自动化研究

    Institute of Scientific and Technical Information of China (English)

    冯进兵

    2012-01-01

      随着科学技术及电力设计的发展,电力系统的自动化水平日益提高,智能控制技术在电力系统中的应用越越来越深入。本文分析了分层递阶控制理论与电力系统智能化之间的联系,以及相似的理论与实践间的相互促进关系。并在电力控制系统中引入了仿人智能控制理论,分析了职能技术在电力自动化系统中的应用。%  with the development of science and technology and design of electric power development,power system automation level increasing,intel igent control technology and its application in power system is more and more thorough.This paper analyzes the hierarchical control theory and power system intel igent connection between theory and practice,as wel as the similarity of the mutual promotion relationship.And in the power control is introduced to the system of the imitation of human intel igent control theory,analysis the function of technology in electric power automation system application.

  19. Strategic Regulatory Evaluation and Endorsement of the Hollow Fiber Tuberculosis System as a Novel Drug Development Tool.

    Science.gov (United States)

    Romero, Klaus; Clay, Robert; Hanna, Debra

    2015-08-15

    The first nonclinical drug development tool (DDT) advanced by the Critical Path to TB Drug Regimens (CPTR) Initiative through a regulatory review process has been endorsed by leading global regulatory authorities. DDTs with demonstrated predictive accuracy for clinical and microbiological outcomes are needed to support decision making. Regulatory endorsement of these DDTs is critical for drug developers, as it promotes confidence in their use in Investigational New Drug and New Drug Application filings. The in vitro hollow fiber system model of tuberculosis (HFS-TB) is able to recapitulate concentration-time profiles (exposure) observed in patients for single drugs and combinations, by evaluating exposure measures for the ability to kill tuberculosis in different physiologic conditions. Monte Carlo simulations make this quantitative output useful to inform susceptibility breakpoints, dosage, and optimal combination regimens in patients, and to design nonclinical experiments in animal models. The Pre-Clinical and Clinical Sciences Working Group within CPTR executed an evidence-based evaluation of the HFS-TB for predictive accuracy. This extensive effort was enabled through the collaboration of subject matter experts representing the pharmaceutical industry, academia, product development partnerships, and regulatory authorities including the Food and Drug Administration (FDA) and the European Medicines Agency (EMA). A comprehensive analysis plan following the regulatory guidance documents for DDT qualification was developed, followed by individual discussions with the FDA and the EMA. The results from the quantitative analyses were submitted to both agencies, pursuing regulatory DDT endorsement. The EMA Qualification Opinion for the HFS-TB DDT was published 26 January 2015 (available at: http://www.ema.europa.eu/ema/index.jsp?curl=pages/regulation/document_listing/document_listing_000319.jsp).

  20. Systems Genetics Identifies a Novel Regulatory Domain of Amylose Synthesis1[OPEN

    Science.gov (United States)

    Parween, Sabiha; Samson, Irene; de Guzman, Krishna; Alhambra, Crisline Mae; Misra, Gopal

    2017-01-01

    A deeper understanding of the regulation of starch biosynthesis in rice (Oryza sativa) endosperm is crucial in tailoring digestibility without sacrificing grain quality. In this study, significant association peaks on chromosomes 6 and 7 were identified through a genomewide association study (GWAS) of debranched starch structure from grains of a 320 indica rice diversity panel using genotyping data from the high-density rice array. A systems genetics approach that interrelates starch structure data from GWAS to functional pathways from a gene regulatory network identified known genes with high correlation to the proportion of amylose and amylopectin. An SNP in the promoter region of Granule Bound Starch Synthase I was identified along with seven other SNPs to form haplotypes that discriminate samples into different phenotypic ranges of amylose. A GWAS peak on chromosome 7 between LOC_Os07g11020 and LOC_Os07g11520 indexed by a nonsynonymous SNP mutation on exon 5 of a bHLH transcription factor was found to elevate the proportion of amylose at the expense of reduced short-chain amylopectin. Linking starch structure with starch digestibility by determining the kinetics of cooked grain amylolysis of selected haplotypes revealed strong association of starch structure with estimated digestibility kinetics. Combining all results from grain quality genomics, systems genetics, and digestibility phenotyping, we propose target haplotypes for fine-tuning starch structure in rice through marker-assisted breeding that can be used to alter the digestibility of rice grain, thus offering rice consumers a new diet-based intervention to mitigate the impact of nutrition-related noncommunicable diseases. PMID:27881726

  1. Hierarchical differentiation of myeloid progenitors is encoded in the transcription factor network.

    Science.gov (United States)

    Krumsiek, Jan; Marr, Carsten; Schroeder, Timm; Theis, Fabian J

    2011-01-01

    Hematopoiesis is an ideal model system for stem cell biology with advanced experimental access. A systems view on the interactions of core transcription factors is important for understanding differentiation mechanisms and dynamics. In this manuscript, we construct a Boolean network to model myeloid differentiation, specifically from common myeloid progenitors to megakaryocytes, erythrocytes, granulocytes and monocytes. By interpreting the hematopoietic literature and translating experimental evidence into Boolean rules, we implement binary dynamics on the resulting 11-factor regulatory network. Our network contains interesting functional modules and a concatenation of mutual antagonistic pairs. The state space of our model is a hierarchical, acyclic graph, typifying the principles of myeloid differentiation. We observe excellent agreement between the steady states of our model and microarray expression profiles of two different studies. Moreover, perturbations of the network topology correctly reproduce reported knockout phenotypes in silico. We predict previously uncharacterized regulatory interactions and alterations of the differentiation process, and line out reprogramming strategies.

  2. Hierarchical Control for Smart Grids

    DEFF Research Database (Denmark)

    Trangbæk, K; Bendtsen, Jan Dimon; Stoustrup, Jakob

    2011-01-01

    This paper deals with hierarchical model predictive control (MPC) of smart grid systems. The design consists of a high level MPC controller, a second level of so-called aggregators, which reduces the computational and communication-related load on the high-level control, and a lower level...... of autonomous consumers. The control system is tasked with balancing electric power production and consumption within the smart grid, and makes active use of the flexibility of a large number of power producing and/or power consuming units. The objective is to accommodate the load variation on the grid, arising...

  3. 层次化的信息系统风险评估方法研究%Study on Hierarchical Information System Risk Assessment

    Institute of Scientific and Technical Information of China (English)

    佟鑫; 张利; 闵京华

    2012-01-01

    由于当前主流的信息安全风险评估方法仅关注系统组件的风险,很少立足于业务风险视角,难以满足业务人员、组织管理者等不同层面人员对信息安全风险的理解。文中提出了一:仲层次化风险评估方法来量化风险,该方法将信息系统安全风险分为组件级、系统级和组织级3个层面,分别关注系统单一组件的风险、单个信息系统风险和多个信息系统构成的组织总体风险。通过对3个层次风险的逐层分析,使得风险分析结果更为全面和客观地反映安全风险评估的层次化需求。%The current methods for risk assessment of information security concern only the risk of system components, base seldom on business risk perspective. Thus, it is difficult to meet the comprehension on information security risk by the people from different levels. Such as the operational staff, organization's management personnel. This paper proposes a hierarchic risk assessment method for quantifying the risk, and this method divides the information systems security risks into three levels including component level, system level and organizational level, and these levels respectively pay attention to the risk of a single component, the risk of a single information system and the organization's overall risk constituted by multiple information system. Through level-by-level analysis on these three levels of risk, the risk analysis results could more comprehensively and objectively reflect the hierarchic requirements in security risk assessment.

  4. Algorithm for solving of two-level hierarchical minimax program control problem in discrete-time dynamical system with incomplete information

    Science.gov (United States)

    Shorikov, A. F.

    2016-12-01

    This article discusses the discrete-time dynamical system consisting from two controlled objects and described by a linear recurrent vector equations in the presence of uncertain perturbations. This dynamical system has two levels of a control: dominant level (the first level or the level I) and subordinate level (the second level or the level II) and both have different linear terminal criterions of functioning and united a priori by determined information and control connections. It is assumed that the sets constraining all a priori undefined parameters are known and they are a finite sets or convex, closed and bounded polyhedrons in the corresponding finite-dimensional vector spaces. For the dynamical system in question, we propose a mathematical formalization in the form of solving two-level hierarchical minimax program control problem with incomplete information. In this article for solving of the investigated problem is proposed the algorithm that has a form of a recurrent procedure of solving a linear programming and a finite optimization problems. The results obtained in this article can be used for computer simulation of an actual dynamical processes and for designing controlling and navigation systems.

  5. Hierarchical System and the Controlling in Firms%科层制度与企业内部控制

    Institute of Scientific and Technical Information of China (English)

    宋婵蓉; 徐向阳

    2011-01-01

    Moral hazard is an important reason which incurs teamwork' s low efficiency. Traditional theory holds that people who have the residual claim to exert oversight functions can settle this problem effectively, the firm is essentially a monitoring mechanism. But, in fact, in order to enable the supervisors who have activity to supervise others, we do not need to give the residual claim to the supervisors. In a team game,the principal can design a discriminatory incentives, make supervisors and supervisees ( under the supervision of the supervisor) choosing hardworking to constitute a Nash equilibrium. The hierarchical nature of the firm greatly reduces the incentive costs, and make certain cooperation which face the Prisoner's Dilemma can be achieved.%道德风险引起的搭便车是使团队效率低下的重要原因,传统理论认为让一个具有剩余索取权的人发挥监督职能将有效解决这一问题。但实际上,为使监督者有积极性监督别人,并不需要赋予监督者剩余索取权。在一个团队合作的博弈中,委托人只需采用一个歧视性的激励机制,即科层制度,使监督者和被监督者都选择努力工作构成一个纳什均衡。科层制度使得完成相同任务的代理人具有不同的收益,因此本质上是一个具有监督功能的歧视性激励机制。企业的科层性质大大减少了激励成本,并使得某些面临囚徒困境的合作得以实现。

  6. Neutrosophic Hierarchical Clustering Algoritms

    Directory of Open Access Journals (Sweden)

    Rıdvan Şahin

    2014-03-01

    Full Text Available Interval neutrosophic set (INS is a generalization of interval valued intuitionistic fuzzy set (IVIFS, whose the membership and non-membership values of elements consist of fuzzy range, while single valued neutrosophic set (SVNS is regarded as extension of intuitionistic fuzzy set (IFS. In this paper, we extend the hierarchical clustering techniques proposed for IFSs and IVIFSs to SVNSs and INSs respectively. Based on the traditional hierarchical clustering procedure, the single valued neutrosophic aggregation operator, and the basic distance measures between SVNSs, we define a single valued neutrosophic hierarchical clustering algorithm for clustering SVNSs. Then we extend the algorithm to classify an interval neutrosophic data. Finally, we present some numerical examples in order to show the effectiveness and availability of the developed clustering algorithms.

  7. Proteomic analysis reveals metabolic and regulatory systems involved the syntrophic and axenic lifestyle of Syntrophomonas wolfei.

    Directory of Open Access Journals (Sweden)

    Jessica Rhea Sieber

    2015-02-01

    Full Text Available Microbial syntrophy is a vital metabolic interaction necessary for the complete oxidation of organic biomass to methane in all-anaerobic ecosystems. However, this process is thermodynamically constrained and represents an ecosystem-level metabolic bottleneck. To gain insight into the physiology of this process, a shotgun proteomic approach was used to quantify the protein landscape of the model syntrophic metabolizer, Syntrophomonas wolfei, grown axenically and syntrophically with Methanospirillum hungatei. Remarkably, the abundance of most proteins as represented by normalized spectral abundance factor (NSAF value changed very little between the pure and coculture growth conditions. Among the most abundant proteins detected were GroEL and GroES chaperonins, a small heat shock protein, and proteins involved in electron transfer, beta-oxidation, and ATP synthesis. Several putative energy conservation enzyme systems that utilize NADH and ferredoxin were present. The abundance of an EtfAB2 and the membrane-bound iron-sulfur oxidoreductase (Swol_0698 gene product delineated a potential conduit for electron transfer between acyl-CoA dehydrogenases and membrane redox carriers. Proteins detected only when S. wolfei was grown with M. hungatei included a zinc-dependent dehydrogenase with a GroES domain, whose gene is present in genomes in many organisms capable of syntrophy, and transcriptional regulators responsive to environmental stimuli or the physiological status of the cell. The proteomic analysis revealed an emphasis macromolecular stability and energy metabolism to S. wolfei and presence of regulatory mechanisms responsive to external stimuli and cellular physiological status.

  8. Imbalanced expression of functional surface molecules in regulatory and effector T cells in systemic lupus erythematosus

    Directory of Open Access Journals (Sweden)

    D. Mesquita Júnior

    2014-08-01

    Full Text Available Regulatory T (TREG cells play an important role in maintaining immune tolerance and avoiding autoimmunity. We analyzed the expression of membrane molecules in TREG and effector T cells in systemic lupus erythematosus (SLE. TREG and effector T cells were analyzed for the expression of CTLA-4, PD1, CD28, CD95, GITR, HLA-DR, OX40, CD40L, and CD45RO in 26 patients with active disease, 31 with inactive disease, and 26 healthy controls. TREG cells were defined as CD25+/highCD127Ø/lowFoxP3+, and effector T cells were defined as CD25+CD127+FoxP3Ø. The ratio of TREG to effector T cells expressing GITR, PD1, HLA-DR, OX40, CD40L, and CD45RO was determined in the three groups. The frequency of TREG cells was similar in patients with SLE and controls. However, SLE patients had a decreased frequency of CTLA-4+TREG and CD28+TREG cells and an increased frequency of CD40L+TREG cells. There was a decrease in the TREG/effector-T ratio for GITR+, HLA-DR+, OX40+, and CD45RO+ cells, and an increased ratio of TREG/effector-T CD40L+ cells in patients with SLE. In addition, CD40L+TREG cell frequency correlated with the SLE disease activity index (P=0.0163. In conclusion, our findings showed several abnormalities in the expression of functionally critical surface molecules in TREG and effector T cells in SLE that may be relevant to the pathogenesis of this disease.

  9. Imbalanced expression of functional surface molecules in regulatory and effector T cells in systemic lupus erythematosus

    Energy Technology Data Exchange (ETDEWEB)

    Mesquita Júnior, D. [Disciplina de Reumatologia, Departamento de Medicina, Escola Paulista de Medicina, Universidade Federal de São Paulo, São Paulo, SP (Brazil); Cruvinel, W.M. [Disciplina de Reumatologia, Departamento de Medicina, Escola Paulista de Medicina, Universidade Federal de São Paulo, São Paulo, SP (Brazil); Departamento de Biomedicina, Universidade Católica de Goiás, Goiânia, GO (Brazil); Araujo, J.A.P. [Disciplina de Reumatologia, Departamento de Medicina, Escola Paulista de Medicina, Universidade Federal de São Paulo, São Paulo, SP (Brazil); Salmazi, K.C.; Kallas, E.G. [Disciplina de Imunologia Clínica e Alergia, Departamento de Clínica Médica, Faculdade de Medicina, Universidade de São Paulo, São Paulo, SP (Brazil); Andrade, L.E.C. [Disciplina de Reumatologia, Departamento de Medicina, Escola Paulista de Medicina, Universidade Federal de São Paulo, São Paulo, SP (Brazil)

    2014-08-22

    Regulatory T (TREG) cells play an important role in maintaining immune tolerance and avoiding autoimmunity. We analyzed the expression of membrane molecules in TREG and effector T cells in systemic lupus erythematosus (SLE). TREG and effector T cells were analyzed for the expression of CTLA-4, PD1, CD28, CD95, GITR, HLA-DR, OX40, CD40L, and CD45RO in 26 patients with active disease, 31 with inactive disease, and 26 healthy controls. TREG cells were defined as CD25{sup +/high}CD127{sup Ø/low}FoxP3{sup +}, and effector T cells were defined as CD25{sup +}CD127{sup +}FoxP3{sup Ø}. The ratio of TREG to effector T cells expressing GITR, PD1, HLA-DR, OX40, CD40L, and CD45RO was determined in the three groups. The frequency of TREG cells was similar in patients with SLE and controls. However, SLE patients had a decreased frequency of CTLA-4{sup +}TREG and CD28{sup +}TREG cells and an increased frequency of CD40L{sup +}TREG cells. There was a decrease in the TREG/effector-T ratio for GITR{sup +}, HLA-DR{sup +}, OX40{sup +}, and CD45RO{sup +} cells, and an increased ratio of TREG/effector-T CD40L{sup +} cells in patients with SLE. In addition, CD40L{sup +}TREG cell frequency correlated with the SLE disease activity index (P=0.0163). In conclusion, our findings showed several abnormalities in the expression of functionally critical surface molecules in TREG and effector T cells in SLE that may be relevant to the pathogenesis of this disease.

  10. DIFFICULTY IN THE FORMATION OF COUNTER-ORBITING HOT JUPITERS FROM NEAR-COPLANAR HIERARCHICAL TRIPLE SYSTEMS: A SUB-STELLAR PERTURBER

    Energy Technology Data Exchange (ETDEWEB)

    Xue, Yuxin; Suto, Yasushi, E-mail: yuxin@utap.phys.s.u-tokyo.ac.jp [Department of Physics, The University of Tokyo, Tokyo 113-0033 (Japan)

    2016-03-20

    Among 100 transiting planets with a measured projected spin–orbit angle λ, several systems are suggested to be counter-orbiting. While these cases may be due to the projection effect, the mechanism that produces a counter-orbiting planet has not been established. A promising scenario for counter-orbiting planets is the extreme eccentricity evolution in near-coplanar hierarchical triple systems with eccentric inner and outer orbits. We examine this scenario in detail by performing a series of systematic numerical simulations, and consider the possibility of forming hot Jupiters (HJs), especially a counter-orbiting one under this mechanism with a distant sub-stellar perturber. We incorporate quadrupole and octupole secular gravitational interaction between the two orbits, and also short-range forces (correction for general relativity, star and inner planetary tide, and rotational distortion) simultaneously. We find that most systems are tidally disrupted and that a small fraction of the surviving planets turn out to be prograde. The formation of counter-orbiting HJs in this scenario is possible only in a very restricted parameter region, and thus is very unlikely in practice.

  11. Difficulty in the Formation of Counter-orbiting Hot Jupiters from Near-coplanar Hierarchical Triple Systems: A Sub-stellar Perturber

    Science.gov (United States)

    Xue, Yuxin; Suto, Yasushi

    2016-03-01

    Among 100 transiting planets with a measured projected spin-orbit angle λ, several systems are suggested to be counter-orbiting. While these cases may be due to the projection effect, the mechanism that produces a counter-orbiting planet has not been established. A promising scenario for counter-orbiting planets is the extreme eccentricity evolution in near-coplanar hierarchical triple systems with eccentric inner and outer orbits. We examine this scenario in detail by performing a series of systematic numerical simulations, and consider the possibility of forming hot Jupiters (HJs), especially a counter-orbiting one under this mechanism with a distant sub-stellar perturber. We incorporate quadrupole and octupole secular gravitational interaction between the two orbits, and also short-range forces (correction for general relativity, star and inner planetary tide, and rotational distortion) simultaneously. We find that most systems are tidally disrupted and that a small fraction of the surviving planets turn out to be prograde. The formation of counter-orbiting HJs in this scenario is possible only in a very restricted parameter region, and thus is very unlikely in practice.

  12. Bright luminescence of Vibrio fischeri aconitase mutants reveals a connection between citrate and the Gac/Csr regulatory system.

    Science.gov (United States)

    Septer, Alecia N; Bose, Jeffrey L; Lipzen, Anna; Martin, Joel; Whistler, Cheryl; Stabb, Eric V

    2015-01-01

    The Gac/Csr regulatory system is conserved throughout the γ-proteobacteria and controls key pathways in central carbon metabolism, quorum sensing, biofilm formation and virulence in important plant and animal pathogens. Here we show that elevated intracellular citrate levels in a Vibrio fischeri aconitase mutant correlate with activation of the Gac/Csr cascade and induction of bright luminescence. Spontaneous or directed mutations in the gene that encodes citrate synthase reversed the bright luminescence of aconitase mutants, eliminated their citrate accumulation and reversed their elevated expression of CsrB. Our data elucidate a correlative link between central metabolic and regulatory pathways, and they suggest that the Gac system senses a blockage at the aconitase step of the tricarboxylic acid cycle, either through elevated citrate levels or a secondary metabolic effect of citrate accumulation, and responds by modulating carbon flow and various functions associated with host colonization, including bioluminescence.

  13. Promoting hierarchical grid internal control model to crack taxi industry regulatory problems%推广“层级式网格化”内控模式破解出租汽车行业监管难题

    Institute of Scientific and Technical Information of China (English)

    王进

    2016-01-01

    出租车作为游客出行的重要交通工具,在提供优质服务、展示城市形象等方面至关重要。出租汽车行业关乎百姓的切身利益和城市的服务环境,是一个城市的文明窗口,也是一张城市的流动名片。出租汽车从业人员多,流动性大,素质参差不齐,没有集约化管理的实体公司,抗风险能力差。针对这种实际情况,为规范出租汽车行业管理,提高行业服务水平,维护社会稳定,特提出制定“层级式网格化”内控管理新模式,使得出租汽车行业实现“单一管理向互动管理、粗放管理向精细管理、突击管理向常态管理”三大转变。%An important transportation taxi as tourists,to provide quality services,is essential to show the image of the city. The taxi industry is related to the vital interests of the people and city service environment,is a city of civilization window,is also a city name card. The flow of taxi practitioners,high mobility. Uneven quality,no intensive management of the entity,the ability to resist risk. Aiming at the situation, to regulate the taxi industry management,improve the level of service industry,to maintain social stability,and formulate a new mode of "most internal management of hierarchical grid,the taxi industry to achieve a" single management to interactive management,extensive to fine management and management,management of three major changes to assault the normal management.

  14. Identification and characterization of the two-component NtrY/NtrX regulatory system in Azospirillum brasilense

    Directory of Open Access Journals (Sweden)

    M.L. Ishida

    2002-06-01

    Full Text Available Two Azospirillum brasilense open reading frames (ORFs exhibited homology with the two-component NtrY/NtrX regulatory system from Azorhizobium caulinodans. These A. brasilense ORFs, located downstream to the nifR3ntrBC operon, were isolated, sequenced and characterized. The present study suggests that ORF1 and ORF2 correspond to the A. brasilense ntrY and ntrX genes, respectively. The amino acid sequences of A. brasilense NtrY and NtrX proteins showed high similarity to sensor/kinase and regulatory proteins, respectively. Analysis of lacZ transcriptional fusions by the ß-galactosidase assay in Escherichia coli ntrC mutants showed that the NtrY/NtrX proteins failed to activate transcription of the nifA promoter of A. brasilense. The ntrYX operon complemented a nifR3ntrBC deletion mutant of A. brasilense for nitrate-dependent growth, suggesting a possible cross-talk between the NtrY/X and NtrB/C sensor/regulator pairs. Our data support the existence of another two-component regulatory system in A. brasilense, the NtrY/NtrX system, probably involved in the regulation of nitrate assimilation.

  15. Hierarchical fuzzy identification of MR damper

    Science.gov (United States)

    Wang, Hao; Hu, Haiyan

    2009-07-01

    Magneto-rheological (MR) dampers, recently, have found many successful applications in civil engineering and numerous area of mechanical engineering. When an MR damper is to be used for vibration suppression, an inevitable problem is to determine the input voltage so as to gain the desired restoring force determined from the control law. This is the so-called inverse problem of MR dampers and is always an obstacle in the application of MR dampers to vibration control. It is extremely difficult to get the inverse model of MR damper because MR dampers are highly nonlinear and hysteretic. When identifying the inverse model of MR damper with simple fuzzy system, there maybe exists curse of dimensionality of fuzzy system. Therefore, it will take much more time, and even the inverse model may not be identifiable. The paper presents two-layer hierarchical fuzzy system, that is, two-layer hierarchical ANFIS to deal with the curse of dimensionality of the fuzzy identification of MR damper and to identify the inverse model of MR damper. Data used for training the model are generated from numerical simulation of nonlinear differential equations. The numerical simulation proves that the proposed hierarchical fuzzy system can model the inverse model of MR damper much more quickly than simple fuzzy system without any reduction of identification precision. Such hierarchical ANFIS shows the higher priority for the complicated system, and can also be used in system identification and system control for the complicated system.

  16. Hierarchical Porous Structures

    Energy Technology Data Exchange (ETDEWEB)

    Grote, Christopher John [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2016-06-07

    Materials Design is often at the forefront of technological innovation. While there has always been a push to generate increasingly low density materials, such as aero or hydrogels, more recently the idea of bicontinuous structures has gone more into play. This review will cover some of the methods and applications for generating both porous, and hierarchically porous structures.

  17. Establishing the Injury Severity of Thoracolumbar Trauma : Confirmation of the Hierarchical Structure of the AOSpine Thoracolumbar Spine Injury Classification System

    NARCIS (Netherlands)

    Schroeder, Gregory D.; Vaccaro, Alexander R.; Kepler, Christopher K.; Koerner, John D.; Oner, F. Cumhur; Dvorak, Marcel F.; Vialle, Luiz R.; Aarabi, Bizhan; Bellabarba, Carlo; Fehlings, Michael G.; Schnake, Klaus J.; Kandziora, Frank

    2015-01-01

    Study Design. Survey of spine surgeons. Objective. To develop a validated regional and global injury severity scoring system for thoracolumbar trauma. Summary of Background Data. The AOSpine Thoracolumbar Spine Injury Classification System was recently published and combines elements of both the Mag

  18. From System-Wide Differential Gene Expression to Perturbed Regulatory Factors: A Combinatorial Approach.

    Directory of Open Access Journals (Sweden)

    Gaurang Mahajan

    Full Text Available High-throughput experiments such as microarrays and deep sequencing provide large scale information on the pattern of gene expression, which undergoes extensive remodeling as the cell dynamically responds to varying environmental cues or has its function disrupted under pathological conditions. An important initial step in the systematic analysis and interpretation of genome-scale expression alteration involves identification of a set of perturbed transcriptional regulators whose differential activity can provide a proximate hypothesis to account for these transcriptomic changes. In the present work, we propose an unbiased and logically natural approach to transcription factor enrichment. It involves overlaying a list of experimentally determined differentially expressed genes on a background regulatory network coming from e.g. literature curation or computational motif scanning, and identifying that subset of regulators whose aggregated target set best discriminates between the altered and the unaffected genes. In other words, our methodology entails testing of all possible regulatory subnetworks, rather than just the target sets of individual regulators as is followed in most standard approaches. We have proposed an iterative search method to efficiently find such a combination, and benchmarked it on E. coli microarray and regulatory network data available in the public domain. Comparative analysis carried out on artificially generated differential expression profiles, as well as empirical factor overexpression data for M. tuberculosis, shows that our methodology provides marked improvement in accuracy of regulatory inference relative to the standard method that involves evaluating factor enrichment in an individual manner.

  19. From System-Wide Differential Gene Expression to Perturbed Regulatory Factors: A Combinatorial Approach.

    Science.gov (United States)

    Mahajan, Gaurang; Mande, Shekhar C

    2015-01-01

    High-throughput experiments such as microarrays and deep sequencing provide large scale information on the pattern of gene expression, which undergoes extensive remodeling as the cell dynamically responds to varying environmental cues or has its function disrupted under pathological conditions. An important initial step in the systematic analysis and interpretation of genome-scale expression alteration involves identification of a set of perturbed transcriptional regulators whose differential activity can provide a proximate hypothesis to account for these transcriptomic changes. In the present work, we propose an unbiased and logically natural approach to transcription factor enrichment. It involves overlaying a list of experimentally determined differentially expressed genes on a background regulatory network coming from e.g. literature curation or computational motif scanning, and identifying that subset of regulators whose aggregated target set best discriminates between the altered and the unaffected genes. In other words, our methodology entails testing of all possible regulatory subnetworks, rather than just the target sets of individual regulators as is followed in most standard approaches. We have proposed an iterative search method to efficiently find such a combination, and benchmarked it on E. coli microarray and regulatory network data available in the public domain. Comparative analysis carried out on artificially generated differential expression profiles, as well as empirical factor overexpression data for M. tuberculosis, shows that our methodology provides marked improvement in accuracy of regulatory inference relative to the standard method that involves evaluating factor enrichment in an individual manner.

  20. A Critique of the Notions of Law and Ethics as Regulatory Systems ...

    African Journals Online (AJOL)

    Law and ethics are in their very natures, regulatory instruments and/or control mechanisms, for ..... ethical dilemmas in question are: Is it justifiable to practice euthanasia? Is it permissible to use ...... The Theology and the Kingdom of God. Applying Ethics ... Catholic Health Association United States, p. viii, p. 101, p. 36. 47.

  1. Role of regulatory T-cells in immunization strategies involving a recombinant alphavirus vector system

    NARCIS (Netherlands)

    Walczak, Mateusz; Regts, Joke; van Oosterhout, Antoon J. M.; Boon, Louis; Wilschut, Jan; Nijman, Hans W.; Daemen, Toos

    2011-01-01

    Background: Regulatory T-cells (Treg) hamper immune responses elicited by cancer vaccines. Therefore, depletion of Treg is being used to improve the outcome of vaccinations. Methods: We studied whether an alphavirus vector-based immunotherapeutic vaccine changes the number and/or activity of Treg an

  2. Implementation of in vitro replacement technologies in regulatory drug testing - An innovation systems perspective

    NARCIS (Netherlands)

    Kooijman, M.; Van Meer, P.J.K.; Moors, E.H.M.; Hekkert, M.P.; Schellekens, H.

    2011-01-01

    The replacement of in vivo methods by in vitro methods in regulatory drug testing is rare. The aim of this research is to identify barriers and drivers of the replacement of in vivo methods by in vitro methods in Europe. We studied two cases. The first case is the Draize eye test. Since 2009, the in

  3. Implementation of in vitro replacement technologies in regulatory drug testing - An innovation systems perspective

    NARCIS (Netherlands)

    Kooijman, M.; Van Meer, P.J.K.; Moors, E.H.M.; Hekkert, M.P.; Schellekens, H.

    2011-01-01

    The replacement of in vivo methods by in vitro methods in regulatory drug testing is rare. The aim of this research is to identify barriers and drivers of the replacement of in vivo methods by in vitro methods in Europe. We studied two cases. The first case is the Draize eye test. Since 2009, the in

  4. Systems biology approach to the dissection of the complexity of regulatory networks in the S. scrofa cardiocirculatory system.

    Science.gov (United States)

    Martini, Paolo; Sales, Gabriele; Calura, Enrica; Brugiolo, Mattia; Lanfranchi, Gerolamo; Romualdi, Chiara; Cagnin, Stefano

    2013-11-21

    Genome-wide experiments are routinely used to increase the understanding of the biological processes involved in the development and maintenance of a variety of pathologies. Although the technical feasibility of this type of experiment has improved in recent years, data analysis remains challenging. In this context, gene set analysis has emerged as a fundamental tool for the interpretation of the results. Here, we review strategies used in the gene set approach, and using datasets for the pig cardiocirculatory system as a case study, we demonstrate how the use of a combination of these strategies can enhance the interpretation of results. Gene set analyses are able to distinguish vessels from the heart and arteries from veins in a manner that is consistent with the different cellular composition of smooth muscle cells. By integrating microRNA elements in the regulatory circuits identified, we find that vessel specificity is maintained through specific miRNAs, such as miR-133a and miR-143, which show anti-correlated expression with their mRNA targets.

  5. Systems Biology Approach to the Dissection of the Complexity of Regulatory Networks in the S. scrofa Cardiocirculatory System

    Directory of Open Access Journals (Sweden)

    Paolo Martini

    2013-11-01

    Full Text Available Genome-wide experiments are routinely used to increase the understanding of the biological processes involved in the development and maintenance of a variety of pathologies. Although the technical feasibility of this type of experiment has improved in recent years, data analysis remains challenging. In this context, gene set analysis has emerged as a fundamental tool for the interpretation of the results. Here, we review strategies used in the gene set approach, and using datasets for the pig cardiocirculatory system as a case study, we demonstrate how the use of a combination of these strategies can enhance the interpretation of results. Gene set analyses are able to distinguish vessels from the heart and arteries from veins in a manner that is consistent with the different cellular composition of smooth muscle cells. By integrating microRNA elements in the regulatory circuits identified, we find that vessel specificity is maintained through specific miRNAs, such as miR-133a and miR-143, which show anti-correlated expression with their mRNA targets.

  6. A model of gene expression based on random dynamical systems reveals modularity properties of gene regulatory networks.

    Science.gov (United States)

    Antoneli, Fernando; Ferreira, Renata C; Briones, Marcelo R S

    2016-06-01

    Here we propose a new approach to modeling gene expression based on the theory of random dynamical systems (RDS) that provides a general coupling prescription between the nodes of any given regulatory network given the dynamics of each node is modeled by a RDS. The main virtues of this approach are the following: (i) it provides a natural way to obtain arbitrarily large networks by coupling together simple basic pieces, thus revealing the modularity of regulatory networks; (ii) the assumptions about the stochastic processes used in the modeling are fairly general, in the sense that the only requirement is stationarity; (iii) there is a well developed mathematical theory, which is a blend of smooth dynamical systems theory, ergodic theory and stochastic analysis that allows one to extract relevant dynamical and statistical information without solving the system; (iv) one may obtain the classical rate equations form the corresponding stochastic version by averaging the dynamic random variables (small noise limit). It is important to emphasize that unlike the deterministic case, where coupling two equations is a trivial matter, coupling two RDS is non-trivial, specially in our case, where the coupling is performed between a state variable of one gene and the switching stochastic process of another gene and, hence, it is not a priori true that the resulting coupled system will satisfy the definition of a random dynamical system. We shall provide the necessary arguments that ensure that our coupling prescription does indeed furnish a coupled regulatory network of random dynamical systems. Finally, the fact that classical rate equations are the small noise limit of our stochastic model ensures that any validation or prediction made on the basis of the classical theory is also a validation or prediction of our model. We illustrate our framework with some simple examples of single-gene system and network motifs.

  7. Trust, regulatory processes and NICE decision-making: Appraising cost-effectiveness models through appraising people and systems.

    Science.gov (United States)

    Brown, Patrick; Hashem, Ferhana; Calnan, Michael

    2016-02-01

    This article presents an ethnographic study of regulatory decision-making regarding the cost-effectiveness of expensive medicines at the National Institute for Health and Care Excellence (NICE) in England. We explored trust as one important mechanism by which problems of complexity and uncertainty were resolved. Existing studies note the salience of trust for regulatory decisions, by which the appraisal of people becomes a proxy for appraising technologies themselves. Although such (dis)trust in manufacturers was one important influence, we describe a more intricate web of (dis)trust relations also involving various expert advisors, fellow committee members and committee Chairs. Within these complex chains of relations, we found examples of both more blind-acquiescent and more critical-Investigative forms of trust as well as, at times, pronounced distrust. Difficulties in overcoming uncertainty through other means obliged trust in some contexts, although not in others. (Dis)trust was constructed through inferences involving abstract systems alongside actors' oral and written presentations-of-self. Systemic features and 'forced options' to trust indicate potential insidious processes of regulatory capture.

  8. Activation of Vago by interferon regulatory factor (IRF) suggests an interferon system-like antiviral mechanism in shrimp.

    Science.gov (United States)

    Li, Chaozheng; Li, Haoyang; Chen, Yixiao; Chen, Yonggui; Wang, Sheng; Weng, Shao-Ping; Xu, Xiaopeng; He, Jianguo

    2015-10-13

    There is a debate on whether invertebrates possess an antiviral immunity similar to the interferon (IFN) system of vertebrates. The Vago gene from arthropods encodes a viral-activated secreted peptide that restricts virus infection through activating the JAK-STAT pathway and is considered to be a cytokine functionally similar to IFN. In this study, the first crustacean IFN regulatory factor (IRF)-like gene was identified in Pacific white shrimp, Litopenaeus vannamei. The L. vannamei IRF showed similar protein nature to mammalian IRFs and could be activated during virus infection. As a transcriptional regulatory factor, L. vannamei IRF could activate the IFN-stimulated response element (ISRE)-containing promoter to regulate the expression of mammalian type I IFNs and initiate an antiviral state in mammalian cells. More importantly, IRF could bind the 5'-untranslated region of L. vannamei Vago4 gene and activate its transcription, suggesting that shrimp Vago may be induced in a similar manner to that of IFNs and supporting the opinion that Vago might function as an IFN-like molecule in invertebrates. These suggested that shrimp might possess an IRF-Vago-JAK/STAT regulatory axis, which is similar to the IRF-IFN-JAK/STAT axis of vertebrates, indicating that invertebrates might possess an IFN system-like antiviral mechanism.

  9. A systems biology approach identifies a regulatory network in parotid acinar cell terminal differentiation.

    Directory of Open Access Journals (Sweden)

    Melissa A Metzler

    Full Text Available The transcription factor networks that drive parotid salivary gland progenitor cells to terminally differentiate, remain largely unknown and are vital to understanding the regeneration process.A systems biology approach was taken to measure mRNA and microRNA expression in vivo across acinar cell terminal differentiation in the rat parotid salivary gland. Laser capture microdissection (LCM was used to specifically isolate acinar cell RNA at times spanning the month-long period of parotid differentiation.Clustering of microarray measurements suggests that expression occurs in four stages. mRNA expression patterns suggest a novel role for Pparg which is transiently increased during mid postnatal differentiation in concert with several target gene mRNAs. 79 microRNAs are significantly differentially expressed across time. Profiles of statistically significant changes of mRNA expression, combined with reciprocal correlations of microRNAs and their target mRNAs, suggest a putative network involving Klf4, a differentiation inhibiting transcription factor, which decreases as several targeting microRNAs increase late in differentiation. The network suggests a molecular switch (involving Prdm1, Sox11, Pax5, miR-200a, and miR-30a progressively decreases repression of Xbp1 gene transcription, in concert with decreased translational repression by miR-214. The transcription factor Xbp1 mRNA is initially low, increases progressively, and may be maintained by a positive feedback loop with Atf6. Transfection studies show that Xbp1 activates the Mist1 promoter [corrected]. In addition, Xbp1 and Mist1 each activate the parotid secretory protein (Psp gene, which encodes an abundant salivary protein, and is a marker of terminal differentiation.This study identifies novel expression patterns of Pparg, Klf4, and Sox11 during parotid acinar cell differentiation, as well as numerous differentially expressed microRNAs. Network analysis identifies a novel stemness arm, a

  10. Investigation of dielectric relaxation in systems with hierarchical organization: From time to frequency domain and back again

    Energy Technology Data Exchange (ETDEWEB)

    Yokoi, Koki [Department of Physics, University of Wisconsin-Milwaukee, Milwaukee, WI (United States); Raicu, Valerică, E-mail: vraicu@uwm.edu [Department of Physics, University of Wisconsin-Milwaukee, Milwaukee, WI (United States); Department of Biological Sciences, University of Wisconsin-Milwaukee, Milwaukee, WI (United States)

    2017-06-28

    Relaxation in fractal structures was investigated theoretically starting from a simple model of a Cantorian tree and kinetic equations linking the change in the number of particles (e.g., electrical charges) populating each branch of the tree and their transfer to other branches or to the ground state. We numerically solved the system of differential equations obtained and determined the so-called cumulative distribution function of particles, which, in dielectric or mechanical relaxation parlance, is the same as the relaxation function of the system. As a physical application, we studied the relationship between the dielectric relaxation in time-domain and the dielectric dispersion in the frequency-domain. Upon choosing appropriate rate constants, our model described accurately well-known non-exponential and non-Debye time- and frequency-domain functions, such as stretched exponentials, Havrilliak–Negami, and frequency power law. Our approach opens the door to applying kinetic models to describe a wide array of relaxation processes, which traditionally have posed great challenges to theoretical modeling based on first principles. - Highlights: • Relaxation was investigated for a system of particles flowing through a Cantorian tree. • A set of kinetic equations was formulated and used to compute the relaxation function of the system. • The dispersion function of the system was computed from the relaxation function. • An analytical method was used to recover the original relaxation function from the dispersion function. • This formalism was used to study dielectric relaxation and dispersion in fractal structures.

  11. Hierarchical Robot Control System and Method for Controlling Select Degrees of Freedom of an Object Using Multiple Manipulators

    Science.gov (United States)

    Abdallah, Muhammad E. (Inventor); Platt, Robert (Inventor); Wampler, II, Charles W. (Inventor)

    2013-01-01

    A robotic system includes a robot having manipulators for grasping an object using one of a plurality of grasp types during a primary task, and a controller. The controller controls the manipulators during the primary task using a multiple-task control hierarchy, and automatically parameterizes the internal forces of the system for each grasp type in response to an input signal. The primary task is defined at an object-level of control, e.g., using a closed-chain transformation, such that only select degrees of freedom are commanded for the object. A control system for the robotic system has a host machine and algorithm for controlling the manipulators using the above hierarchy. A method for controlling the system includes receiving and processing the input signal using the host machine, including defining the primary task at the object-level of control, e.g., using a closed-chain definition, and parameterizing the internal forces for each of grasp type.

  12. Improving broadcast channel rate using hierarchical modulation

    CERN Document Server

    Meric, Hugo; Arnal, Fabrice; Lesthievent, Guy; Boucheret, Marie-Laure

    2011-01-01

    We investigate the design of a broadcast system where the aim is to maximise the throughput. This task is usually challenging due to the channel variability. Forty years ago, Cover introduced and compared two schemes: time sharing and superposition coding. The second scheme was proved to be optimal for some channels. Modern satellite communications systems such as DVB-SH and DVB-S2 mainly rely on time sharing strategy to optimize throughput. They consider hierarchical modulation, a practical implementation of superposition coding, but only for unequal error protection or backward compatibility purposes. We propose in this article to combine time sharing and hierarchical modulation together and show how this scheme can improve the performance in terms of available rate. We present the gain on a simple channel modeling the broadcasting area of a satellite. Our work is applied to the DVB-SH standard, which considers hierarchical modulation as an optional feature.

  13. Application of hierarchical dissociated neural network in closed-loop hybrid system integrating biological and mechanical intelligence.

    Directory of Open Access Journals (Sweden)

    Yongcheng Li

    Full Text Available Neural networks are considered the origin of intelligence in organisms. In this paper, a new design of an intelligent system merging biological intelligence with artificial intelligence was created. It was based on a neural controller bidirectionally connected to an actual mobile robot to implement a novel vehicle. Two types of experimental preparations were utilized as the neural controller including 'random' and '4Q' (cultured neurons artificially divided into four interconnected parts neural network. Compared to the random cultures, the '4Q' cultures presented absolutely different activities, and the robot controlled by the '4Q' network presented better capabilities in search tasks. Our results showed that neural cultures could be successfully employed to control an artificial agent; the robot performed better and better with the stimulus because of the short-term plasticity. A new framework is provided to investigate the bidirectional biological-artificial interface and develop new strategies for a future intelligent system using these simplified model systems.

  14. Application of hierarchical dissociated neural network in closed-loop hybrid system integrating biological and mechanical intelligence.

    Science.gov (United States)

    Li, Yongcheng; Sun, Rong; Zhang, Bin; Wang, Yuechao; Li, Hongyi

    2015-01-01

    Neural networks are considered the origin of intelligence in organisms. In this paper, a new design of an intelligent system merging biological intelligence with artificial intelligence was created. It was based on a neural controller bidirectionally connected to an actual mobile robot to implement a novel vehicle. Two types of experimental preparations were utilized as the neural controller including 'random' and '4Q' (cultured neurons artificially divided into four interconnected parts) neural network. Compared to the random cultures, the '4Q' cultures presented absolutely different activities, and the robot controlled by the '4Q' network presented better capabilities in search tasks. Our results showed that neural cultures could be successfully employed to control an artificial agent; the robot performed better and better with the stimulus because of the short-term plasticity. A new framework is provided to investigate the bidirectional biological-artificial interface and develop new strategies for a future intelligent system using these simplified model systems.

  15. Processes in regulatory systems during development of various adaptational reactions and evaluation of functional state dynamics in the organism

    Directory of Open Access Journals (Sweden)

    Galina V. Zhukova

    2015-11-01

    Full Text Available The paper describes some concepts on processes occurring in the neuroendocrine and immune systems during development of general unspecific adaptational reactions. The concepts are based on the known evidence on the changes in the regulatory systems and the previously identified peculiarities in correlations between the levels of biogenic amines in blood and the organs, respectively, under various adaptational reactions, as well as the known effects of biogenic amines. A number of practical consequences significant for the correct evaluation of the functional state in humans and animals are also considered herein.

  16. A Two-Component Regulatory System Integrates Redox State and Population Density Sensing in Pseudomonas putida▿ †

    OpenAIRE

    Fernández-Piñar, Regina; Ramos, Juan Luis; Rodríguez-Herva, José Juan; Espinosa-Urgel, Manuel

    2008-01-01

    A two-component system formed by a sensor histidine kinase and a response regulator has been identified as an element participating in cell density signal transduction in Pseudomonas putida KT2440. It is a homolog of the Pseudomonas aeruginosa RoxS/RoxR system, which in turn belongs to the RegA/RegB family, described in photosynthetic bacteria as a key regulatory element. In KT2440, the two components are encoded by PP_0887 (roxS) and PP_0888 (roxR), which are transcribed in a single unit. Ch...

  17. Analyzing the Factorial Structure of the Classroom Assessment Scoring System-Secondary Using a Bayesian Hierarchical Multivariate Ordinal Model

    Science.gov (United States)

    Yuan, Kun; McCaffrey, Daniel F.; Savitsky, Terrance D.

    2013-01-01

    Standardized teaching observation protocols have become increasingly popular in evaluating teaching in recent years. One of such protocols that has gained substantial interest from researchers and practitioners is the Classroom Assessment Scoring System-Secondary (CLASSS). According to the developer, CLASS-S has three domains of teacher-student…

  18. The effect of reward system on job satisfaction in an organizational chart of four hierarchical levels: A qualitative study

    NARCIS (Netherlands)

    Galanou, E.; Georgakopoulos, G.; Sotiropoulos, I.; Vasilopoulos, D.

    2010-01-01

    Rewards systems are one of the most significant issues of the human resource management. Throughout the literature, it is obvious that theorists and academics, as well as practitioners and managers emphasize the important factor of rewards. Additionally, job satisfaction is another crucial term with

  19. On the Optimization of the Hierarchical Structure in National Governance System%论国家治理体系的层级结构优化

    Institute of Scientific and Technical Information of China (English)

    桑玉成; 鄢波

    2014-01-01

    T he main problem of the hierarchical structure in national governance system is that there is a lack of norms in relationship between central and local governments ;the authority allocation and function definition in vertical level is vague , forming “isomorphic responsibility" governmental system .The phenomenon of isomorphic responsibilities is related to the constitutional law and resource allocation . There is a separate structure between governance organization from top to bottom and expression of the social interests from bottom to top .In order to improve the governance system ,it is necessary to distinguish the boundary among state market and society ,and allocate reasonably the functions and resources among different levels of the government .%当前我国国家治理层级结构中存在的问题主要是央地关系缺乏制度化规范,纵向层级间的权力配置和职能界定模糊不清,上下形成职责同构。职责同构现象同宪法法律规定和资源分配现状有关。自上而下的同构组织与自下而上的社会利益表达存在结构性分离。要完善治理体系,需要将国家与市场、社会边界进行区分,并在不同政府层级间合理配置职权和治理资源。

  20. Biomechanical cell regulatory networks as complex adaptive systems in relation to cancer.

    Science.gov (United States)

    Feller, Liviu; Khammissa, Razia Abdool Gafaar; Lemmer, Johan

    2017-01-01

    Physiological structure and function of cells are maintained by ongoing complex dynamic adaptive processes in the intracellular molecular pathways controlling the overall profile of gene expression, and by genes in cellular gene regulatory circuits. Cytogenetic mutations and non-genetic factors such as chronic inflammation or repetitive trauma, intrinsic mechanical stresses within extracellular matrix may induce redirection of gene regulatory circuits with abnormal reactivation of embryonic developmental programmes which can now drive cell transformation and cancer initiation, and later cancer progression and metastasis. Some of the non-genetic factors that may also favour cancerization are dysregulation in epithelial-mesenchymal interactions, in cell-to-cell communication, in extracellular matrix turnover, in extracellular matrix-to-cell interactions and in mechanotransduction pathways. Persistent increase in extracellular matrix stiffness, for whatever reason, has been shown to play an important role in cell transformation, and later in cancer cell invasion. In this article we review certain cell regulatory networks driving carcinogenesis, focussing on the role of mechanical stresses modulating structure and function of cells and their extracellular matrices.

  1. Combined effect of diabetes mellitus and exercise training on cardiac function : a study of β-adrenergic system and intracellular calcium regulatory system

    OpenAIRE

    Le Douairon Lahaye, Solène

    2009-01-01

    The insulin treatment does not avoid long-term development of cardiomyopathy, regular physical activity is now offered as a complement to drug therapy of diabetes. Our primary aim was to determine long term respective effects of exercise training and insulin treatment on cardiac function with a focus on the β-adrenergic system and/or on the calcium intracellular regulatory system. In the long-term insulin treatment and exercise training were not able to decrease the troubles caused by diabete...

  2. Collaborative Hierarchical Sparse Modeling

    CERN Document Server

    Sprechmann, Pablo; Sapiro, Guillermo; Eldar, Yonina C

    2010-01-01

    Sparse modeling is a powerful framework for data analysis and processing. Traditionally, encoding in this framework is done by solving an l_1-regularized linear regression problem, usually called Lasso. In this work we first combine the sparsity-inducing property of the Lasso model, at the individual feature level, with the block-sparsity property of the group Lasso model, where sparse groups of features are jointly encoded, obtaining a sparsity pattern hierarchically structured. This results in the hierarchical Lasso, which shows important practical modeling advantages. We then extend this approach to the collaborative case, where a set of simultaneously coded signals share the same sparsity pattern at the higher (group) level but not necessarily at the lower one. Signals then share the same active groups, or classes, but not necessarily the same active set. This is very well suited for applications such as source separation. An efficient optimization procedure, which guarantees convergence to the global opt...

  3. Evolutionary analysis and lateral gene transfer of two-component regulatory systems associated with heavy-metal tolerance in bacteria.

    Science.gov (United States)

    Bouzat, Juan L; Hoostal, Matthew J

    2013-05-01

    Microorganisms have adapted intricate signal transduction mechanisms to coordinate tolerance to toxic levels of metals, including two-component regulatory systems (TCRS). In particular, both cop and czc operons are regulated by TCRS; the cop operon plays a key role in bacterial tolerance to copper, whereas the czc operon is involved in the efflux of cadmium, zinc, and cobalt from the cell. Although the molecular physiology of heavy metal tolerance genes has been extensively studied, their evolutionary relationships are not well-understood. Phylogenetic relationships among heavy-metal efflux proteins and their corresponding two-component regulatory proteins revealed orthologous and paralogous relationships from species divergences and ancient gene duplications. The presence of heavy metal tolerance genes on bacterial plasmids suggests these genes may be prone to spread through horizontal gene transfer. Phylogenetic inferences revealed nine potential examples of lateral gene transfer associated with metal efflux proteins and two examples for regulatory proteins. Notably, four of the examples suggest lateral transfer across major evolutionary domains. In most cases, differences in GC content in metal tolerance genes and their corresponding host genomes confirmed lateral gene transfer events. Three-dimensional protein structures predicted for the response regulators encoded by cop and czc operons showed a high degree of structural similarity with other known proteins involved in TCRS signal transduction, which suggests common evolutionary origins of functional phenotypes and similar mechanisms of action for these response regulators.

  4. Hierarchical manifold learning.

    Science.gov (United States)

    Bhatia, Kanwal K; Rao, Anil; Price, Anthony N; Wolz, Robin; Hajnal, Jo; Rueckert, Daniel

    2012-01-01

    We present a novel method of hierarchical manifold learning which aims to automatically discover regional variations within images. This involves constructing manifolds in a hierarchy of image patches of increasing granularity, while ensuring consistency between hierarchy levels. We demonstrate its utility in two very different settings: (1) to learn the regional correlations in motion within a sequence of time-resolved images of the thoracic cavity; (2) to find discriminative regions of 3D brain images in the classification of neurodegenerative disease,

  5. Adaptive hierarchic transformations for dynamically $p$-enriched slope-limiting over discontinuous Galerkin systems of generalized equations

    CERN Document Server

    Michoski, C; Dawson, C; Kubatko, E J; Wirasaet, D; Westerink, J J

    2010-01-01

    We study a family of generalized slope limiters in two dimensions for Runge-Kutta discontinuous Galerkin (RKDG) solutions of advection--diffusion systems. We analyze the numerical behavior of these limiters applied to a pair of model problems, comparing the error of the approximate solutions, and discuss each limiter's advantages and disadvantages. We then introduce a series of coupled $p$-enrichment schemes that may be used as standalone dynamic $p$-enrichment strategies, or may be augmented via any in the family of variable-in-$p$ slope limiters presented.

  6. Hierarchical Problem Solving with the Linkage Tree Genetic Algorithm

    NARCIS (Netherlands)

    Thierens, D.; Bosman, P.A.N.; Blum, C.; Alba, E.

    2013-01-01

    Hierarchical problems represent an important class of nearly decomposable problems. The concept of near decomposability is central to the study of complex systems. When little a priori information is available, a black box problem solver is needed to optimize these hierarchical problems. The solver

  7. Hierarchically Structured Electrospun Fibers

    Directory of Open Access Journals (Sweden)

    Nicole E. Zander

    2013-01-01

    Full Text Available Traditional electrospun nanofibers have a myriad of applications ranging from scaffolds for tissue engineering to components of biosensors and energy harvesting devices. The generally smooth one-dimensional structure of the fibers has stood as a limitation to several interesting novel applications. Control of fiber diameter, porosity and collector geometry will be briefly discussed, as will more traditional methods for controlling fiber morphology and fiber mat architecture. The remainder of the review will focus on new techniques to prepare hierarchically structured fibers. Fibers with hierarchical primary structures—including helical, buckled, and beads-on-a-string fibers, as well as fibers with secondary structures, such as nanopores, nanopillars, nanorods, and internally structured fibers and their applications—will be discussed. These new materials with helical/buckled morphology are expected to possess unique optical and mechanical properties with possible applications for negative refractive index materials, highly stretchable/high-tensile-strength materials, and components in microelectromechanical devices. Core-shell type fibers enable a much wider variety of materials to be electrospun and are expected to be widely applied in the sensing, drug delivery/controlled release fields, and in the encapsulation of live cells for biological applications. Materials with a hierarchical secondary structure are expected to provide new superhydrophobic and self-cleaning materials.

  8. Hierarchical video summarization

    Science.gov (United States)

    Ratakonda, Krishna; Sezan, M. Ibrahim; Crinon, Regis J.

    1998-12-01

    We address the problem of key-frame summarization of vide in the absence of any a priori information about its content. This is a common problem that is encountered in home videos. We propose a hierarchical key-frame summarization algorithm where a coarse-to-fine key-frame summary is generated. A hierarchical key-frame summary facilitates multi-level browsing where the user can quickly discover the content of the video by accessing its coarsest but most compact summary and then view a desired segment of the video with increasingly more detail. At the finest level, the summary is generated on the basis of color features of video frames, using an extension of a recently proposed key-frame extraction algorithm. The finest level key-frames are recursively clustered using a novel pairwise K-means clustering approach with temporal consecutiveness constraint. We also address summarization of MPEG-2 compressed video without fully decoding the bitstream. We also propose efficient mechanisms that facilitate decoding the video when the hierarchical summary is utilized in browsing and playback of video segments starting at selected key-frames.

  9. Meta-hierarchical-heuristic-mathematical- model of loading problems in flexible manufacturing system for development of an intelligent approach

    Directory of Open Access Journals (Sweden)

    Ranbir Singh

    2016-04-01

    Full Text Available Flexible manufacturing system (FMS promises a wide range of manufacturing benefits in terms of flexibility and productivity. These benefits are targeted by efficient production planning. Part type selection, machine grouping, deciding production ratio, resource allocation and machine loading are five identified production planning problems. Machine loading is the most identified complex problem solved with aid of computers. System up gradation and newer technology adoption are the primary needs of efficient FMS generating new scopes of research in the field. The literature review is carried and the critical analysis is being executed in the present work. This paper presents the outcomes of the mathematical modelling techniques for loading of machines in FMS’s. It was also analysed that the mathematical modelling is necessary for accurate and reliable analysis for practical applications. However, excessive computations need to be avoided and heuristics have to be used for real-world problems. This paper presents the heuristics-mathematical modelling of loading problem with machine processing time as primary input. The aim of the present work is to solve a real-world machine loading problem with an objective of balancing the workload of the FMS with decreased computational time. A Matlab code is developed for the solution and the results are found most accurate and reliable as presented in the paper.

  10. Leaf-architectured 3D Hierarchical Artificial Photosynthetic System of Perovskite Titanates Towards CO2 Photoreduction Into Hydrocarbon Fuels

    Science.gov (United States)

    Zhou, Han; Guo, Jianjun; Li, Peng; Fan, Tongxiang; Zhang, Di; Ye, Jinhua

    2013-04-01

    The development of an ``artificial photosynthetic system'' (APS) having both the analogous important structural elements and reaction features of photosynthesis to achieve solar-driven water splitting and CO2 reduction is highly challenging. Here, we demonstrate a design strategy for a promising 3D APS architecture as an efficient mass flow/light harvesting network relying on the morphological replacement of a concept prototype-leaf's 3D architecture into perovskite titanates for CO2 photoreduction into hydrocarbon fuels (CO and CH4). The process uses artificial sunlight as the energy source, water as an electron donor and CO2 as the carbon source, mimicking what real leaves do. To our knowledge this is the first example utilizing biological systems as ``architecture-directing agents'' for APS towards CO2 photoreduction, which hints at a more general principle for APS architectures with a great variety of optimized biological geometries. This research would have great significance for the potential realization of global carbon neutral cycle.

  11. Frequency-Division Power Sharing and Hierarchical Control Design for DC Shipboard Microgrids with Hybrid Energy Storage Systems

    DEFF Research Database (Denmark)

    Jin, Zheming; Meng, Lexuan; Quintero, Juan Carlos Vasquez

    2017-01-01

    Due to the increasing need to reduce the cost and emission of ships, shipboard applications are calling advanced technologies to go onboard. Recently, cleaner power sources (i.e. gas turbines, fuel cell, solar and wind power), energy storage, advanced control and power/energy management are intro......Due to the increasing need to reduce the cost and emission of ships, shipboard applications are calling advanced technologies to go onboard. Recently, cleaner power sources (i.e. gas turbines, fuel cell, solar and wind power), energy storage, advanced control and power/energy management...... are introduced to meet the new requirement, and therefore, making shipboard power system more like a microgrid. In this paper, a frequency-division based power sharing method is proposed to solve the contradiction between fuel efficiency and dynamic load conditions of marine vessels. With effective design...

  12. Transparent Computing System Based on Hierarchical Cache%基于分级Cache的透明计算系统

    Institute of Scientific and Technical Information of China (English)

    谭成辉; 杨磊; 文建国; 李肯立

    2011-01-01

    A novel transparent computing system called HCTS is proposed in this paper. HCTS adopts the (m)erarchical cache strategy in client and server respectively to improve the I/O performance of the system. In order to improve the cache hit ratio according to the given environment of transparent computing, this paper presents a modified LRU replacement algorithm called LRU-AFS based on the count threshold of data accessing times, which is used to distinguish between frequently used data and rarely used data. Test results show that, with growing in number of clients in LAN, HCTS can better improve and enhance the client I/O performance compared to general TS, reduce the network traffic dramatically, shorten the boot time significantly and increase the random read-write throughput of clients effectively.%设计并实现一个基于分级Cache的透明计算系统HCTS,在系统客户端和服务端采用两级缓存来提升I/O性能.在缓存的管理策略上,针对透明计算应用环境,以提高缓存命中率为主要目标,提出一种基于访问频率计数阈值的改进LRU置换算法LRU-AFS.测试结果表明,当网络环境中的客户主机数不断增加时,与普通透明计算系统TS相比,HCTS能够在减少网络流量的同时大幅缩短客户机启动时间,提高随机读写吞吐量.

  13. Analyzing security protocols in hierarchical networks

    DEFF Research Database (Denmark)

    Zhang, Ye; Nielson, Hanne Riis

    2006-01-01

    Validating security protocols is a well-known hard problem even in a simple setting of a single global network. But a real network often consists of, besides the public-accessed part, several sub-networks and thereby forms a hierarchical structure. In this paper we first present a process calculus...... capturing the characteristics of hierarchical networks and describe the behavior of protocols on such networks. We then develop a static analysis to automate the validation. Finally we demonstrate how the technique can benefit the protocol development and the design of network systems by presenting a series...

  14. Understanding the genetic diversity, spatial genetic structure and mating system at the hierarchical levels of fruits and individuals of a continuous Theobroma cacao population from the Brazilian Amazon

    Science.gov (United States)

    Silva, C R S; Albuquerque, P S B; Ervedosa, F R; Mota, J W S; Figueira, A; Sebbenn, A M

    2011-01-01

    Understanding the mating patterns of populations of tree species is a key component of ex situ genetic conservation. In this study, we analysed the genetic diversity, spatial genetic structure (SGS) and mating system at the hierarchical levels of fruits and individuals as well as pollen dispersal patterns in a continuous population of Theobroma cacao in Pará State, Brazil. A total of 156 individuals in a 0.56 ha plot were mapped and genotyped for nine microsatellite loci. For the mating system analyses, 50 seeds were collected from nine seed trees by sampling five fruits per tree (10 seeds per fruit). Among the 156 individuals, 127 had unique multilocus genotypes, and the remaining were clones. The population was spatially aggregated; it demonstrated a significant SGS up to 15 m that could be attributed primarily to the presence of clones. However, the short seed dispersal distance also contributed to this pattern. Population matings occurred mainly via outcrossing, but selfing was observed in some seed trees, which indicated the presence of individual variation for self-incompatibility. The matings were also correlated, especially within (r̂p(m)=0.607) rather than among the fruits (r̂p(m)=0.099), which suggested that a small number of pollen donors fertilised each fruit. The paternity analysis suggested a high proportion of pollen migration (61.3%), although within the plot, most of the pollen dispersal encompassed short distances (28 m). The determination of these novel parameters provides the fundamental information required to establish long-term ex situ conservation strategies for this important tropical species. PMID:21139632

  15. Incentive Mechanisms for Hierarchical Spectrum Markets

    CERN Document Server

    Iosifidis, George; Alpcan, Tansu; Koutsopoulos, Iordanis

    2011-01-01

    We study spectrum allocation mechanisms in hierarchical multi-layer markets which are expected to proliferate in the near future based on the current spectrum policy reform proposals. We consider a setting where a state agency sells spectrum to Primary Operators (POs) and in turn these resell it to Secondary Operators (SOs) through auctions. We show that these hierarchical markets do not result in a socially efficient spectrum allocation which is aimed by the agency, due to lack of coordination among the entities in different layers and the inherently selfish revenue-maximizing strategy of POs. In order to reconcile these opposing objectives, we propose an incentive mechanism which aligns the strategy and the actions of the POs with the objective of the agency, and thus it leads to system performance improvement in terms of social welfare. This pricing based mechanism constitutes a method for hierarchical market regulation and requires the feedback provision from SOs. A basic component of the proposed incenti...

  16. Hierarchical Neural Network Structures for Phoneme Recognition

    CERN Document Server

    Vasquez, Daniel; Minker, Wolfgang

    2013-01-01

    In this book, hierarchical structures based on neural networks are investigated for automatic speech recognition. These structures are evaluated on the phoneme recognition task where a  Hybrid Hidden Markov Model/Artificial Neural Network paradigm is used. The baseline hierarchical scheme consists of two levels each which is based on a Multilayered Perceptron. Additionally, the output of the first level serves as a second level input. The computational speed of the phoneme recognizer can be substantially increased by removing redundant information still contained at the first level output. Several techniques based on temporal and phonetic criteria have been investigated to remove this redundant information. The computational time could be reduced by 57% whilst keeping the system accuracy comparable to the baseline hierarchical approach.

  17. Static and dynamic friction of hierarchical surfaces

    Science.gov (United States)

    Costagliola, Gianluca; Bosia, Federico; Pugno, Nicola M.

    2016-12-01

    Hierarchical structures are very common in nature, but only recently have they been systematically studied in materials science, in order to understand the specific effects they can have on the mechanical properties of various systems. Structural hierarchy provides a way to tune and optimize macroscopic mechanical properties starting from simple base constituents and new materials are nowadays designed exploiting this possibility. This can be true also in the field of tribology. In this paper we study the effect of hierarchical patterned surfaces on the static and dynamic friction coefficients of an elastic material. Our results are obtained by means of numerical simulations using a one-dimensional spring-block model, which has previously been used to investigate various aspects of friction. Despite the simplicity of the model, we highlight some possible mechanisms that explain how hierarchical structures can significantly modify the friction coefficients of a material, providing a means to achieve tunability.

  18. Confirmation of a recent bipolar ejection in the very young hierarchical multiple system IRAS 16293-2422

    CERN Document Server

    Pech, G; Chandler, C; Rodriguez, Luis F; D'Alessio, P; Brogan, C; Wilner, D; Ho, P

    2010-01-01

    We present and analyze two new high-resolution (approx 0.3 arcsec), high-sensitivity (approx 50 uJy beam-1) Very Large Array 3.6 cm observations of IRAS 16293-2422 obtained in 2007 August and 2008 December. The components A2alpha and A2beta recently detected in this system are still present, and have moved roughly symmetrically away from source A2 at a projected velocity of 30-80 km s-1. This confirms that A2alpha and A2beta were formed as a consequence of a very recent bipolar ejection from A2. Powerful bipolar ejections have long been known to occur in low-mass young stars, but this is -to our knowledge-- the first time that such a dramatic one is observed from its very beginning. Under the reasonable assumption that the flux detected at radio wavelengths is optically thin free-free emission, one can estimate the mass of each ejecta to be of the order of 10^-8 Msun. If the ejecta were created as a consequence of an episode of enhanced mass loss accompanied by an increase in accretion onto the protostar, the...

  19. WASP-34b: a near-grazing transiting sub-Jupiter-mass exoplanet in a hierarchical triple system

    Science.gov (United States)

    Smalley, B.; Anderson, D. R.; Collier Cameron, A.; Hellier, C.; Lendl, M.; Maxted, P. F. L.; Queloz, D.; Triaud, A. H. M. J.; West, R. G.; Bentley, S. J.; Enoch, B.; Gillon, M.; Lister, T. A.; Pepe, F.; Pollacco, D.; Segransan, D.; Smith, A. M. S.; Southworth, J.; Udry, S.; Wheatley, P. J.; Wood, P. L.; Bento, J.

    2011-02-01

    We report the discovery of WASP-34b, a sub-Jupiter-mass exoplanet transiting its 10.4-magnitude solar-type host star (1SWASP J110135.89-235138.4; TYC 6636-540-1) every 4.3177 days in a slightly eccentric orbit (e = 0.038±0.012). We find a planetary mass of 0.59±0.01 MJup and radius of 1.22-0.08+0.11 RJup. There is a linear trend in the radial velocities of 55±4 m s-1 y-1 indicating the presence of a long-period third body in the system with a mass ⪆0.45 MJup at a distance of ⪆1.2 AU from the host star. This third-body is either a low-mass star, a white dwarf, or another planet. The transit depth ((RP/Rstar)2 = 0.0126) and high impact parameter (b = 0.90) suggest that this could be the first known transiting exoplanet expected to undergo grazing transits, but with a confidence of only 80%. Radial velocity and photometric data are only available in electronic form at the CDS via anonymous ftp to cdsarc.u-strasbg.fr (130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/526/A130

  20. WASP-34b: a near-grazing transiting sub-Jupiter-mass exoplanet in a hierarchical triple system

    CERN Document Server

    Smalley, B; Cameron, A Collier; Hellier, C; Lendl, M; Maxted, P F L; Queloz, D; Triaud, A H M J; West, R G; Bentley, S J; Enoch, B; Gillon, M; Lister, T A; Pepe, F; Pollacco, D; Segransan, D; Smith, A M S; Southworth, J; Udry, S; Wheatley, P J; Wood, P L; Bento, J

    2010-01-01

    We report the discovery of WASP-34b, a sub-Jupiter-mass exoplanet transiting its 10.4-magnitude solar-type host star (1SWASP J110135.89-235138.4; TYC 6636-540-1) every 4.3177 days in a slightly eccentric orbit (e = 0.038 +/- 0.012). We find a planetary mass of 0.59 +/- 0.01 M_Jup and radius of 1.22 ^{+0.11}_{-0.08} R_Jup. There is a linear trend in the radial velocities of 55+/-4 m/s/y indicating the presence of a long-period third body in the system with a mass > 0.45 M_Jup at a distance of >1.2 AU from the host star. This third-body is either a low-mass star, white dwarf, or another planet. The transit depth ((R_P/R_*)^2 = 0.0126) and high impact parameter (b = 0.90) suggest that this could be the first known transiting exoplanet expected to undergo grazing transits, but with a confidence of only ~80%.

  1. Dynamic Organization of Hierarchical Memories.

    Science.gov (United States)

    Kurikawa, Tomoki; Kaneko, Kunihiko

    2016-01-01

    In the brain, external objects are categorized in a hierarchical way. Although it is widely accepted that objects are represented as static attractors in neural state space, this view does not take account interaction between intrinsic neural dynamics and external input, which is essential to understand how neural system responds to inputs. Indeed, structured spontaneous neural activity without external inputs is known to exist, and its relationship with evoked activities is discussed. Then, how categorical representation is embedded into the spontaneous and evoked activities has to be uncovered. To address this question, we studied bifurcation process with increasing input after hierarchically clustered associative memories are learned. We found a "dynamic categorization"; neural activity without input wanders globally over the state space including all memories. Then with the increase of input strength, diffuse representation of higher category exhibits transitions to focused ones specific to each object. The hierarchy of memories is embedded in the transition probability from one memory to another during the spontaneous dynamics. With increased input strength, neural activity wanders over a narrower state space including a smaller set of memories, showing more specific category or memory corresponding to the applied input. Moreover, such coarse-to-fine transitions are also observed temporally during transient process under constant input, which agrees with experimental findings in the temporal cortex. These results suggest the hierarchy emerging through interaction with an external input underlies hierarchy during transient process, as well as in the spontaneous activity.

  2. Collaborative Research: Metabolic Engineering of E. coli Sugar-Utilization Regulatory Systems for the Consumption of Plant Biomass Sugars.

    Energy Technology Data Exchange (ETDEWEB)

    Ramon Gonzalez (PI); J. V. Shanks (Co-PI); K-Y. San (Co-PI).

    2006-03-31

    The overall objective of this project is to metabolically engineer the E. coli sugar-utilization regulatory systems (SURS) to utilize sugar mixtures obtained from plant biomass. Of particular relevance is the implementation of a metabolic engineering cycle aided by functional genomics and systems biology tools. Our findings will help in the establishment of a platform for the efficient production of fuels and chemicals from lignocellulosic sugars. Our research has improved the understanding of the role of SURS in regulating sugar utilization and several other cellular functions. For example, we discovered that Mlc, a global regulatory protein, regulates the utilization of xylose and demonstrated the existence of an important link between catabolite repression and respiratory/fermentative metabolism. The study of SURS mutants also revealed a connection between flagellar biosynthesis and catabolite repression. Several tools were also developed as part of this project. A novel tool (Elementary Network Decomposition, END) to help elucidate the network topology of regulatory systems was developed and its utility as a discovery tool was demonstrated by applying it to the SURS in E. coli. A novel method (and software) to estimate metabolic fluxes that uses labeling experiments and eliminates reliance on extracellular fluxes was also developed. Although not initially considered in the scope of this project, we have developed a novel and superior method for optimization of HPLC separation and applied it to the simultaneous quantification of different functionalities (sugars, organic acids, ethanol, etc.) present in our fermentation samples. Currently under development is a genetic network driven metabolic flux analysis framework to integrate transcriptional and flux data.

  3. Regulatory Role of the MisR/S Two-Component System in Hemoglobin Utilization in Neisseria meningitidis▿ †

    OpenAIRE

    2009-01-01

    Outer membrane iron receptors are some of the major surface entities that are critical for meningococcal pathogenesis. The gene encoding the meningococcal hemoglobin receptor, HmbR, is both independently transcribed and transcriptionally linked to the upstream gene hemO, which encodes a heme oxygenase. The MisR/S two-component system was previously determined to regulate hmbR transcription, and its hemO and hmbR regulatory mechanisms were characterized further here. The expression of hemO and...

  4. Novel two-component regulatory systems play a role in biofilm formation of Lactobacillus reuteri rodent isolate 100-23.

    Science.gov (United States)

    Su, Marcia Shu-Wei; Gänzle, Michael G

    2014-04-01

    This study characterized the two-component regulatory systems encoded by bfrKRT and cemAKR, and assessed their influence on biofilm formation by Lactobacillus reuteri 100-23. A method for deletion of multiple genes was employed to disrupt the genetic loci of two-component systems. The operons bfrKRT and cemAKR showed complementary organization. Genes bfrKRT encode a histidine kinase, a response regulator and an ATP-binding cassette-type transporter with a bacteriocin-processing peptidase domain, respectively. Genes cemAKR code for a signal peptide, a histidine kinase and a response regulator, respectively. Deletion of single or multiple genes in the operons bfrKRT and cemAKR did not affect cell morphology, growth or the sensitivity to various stressors. However, gene disruption affected biofilm formation; this effect was dependent on the carbon source. Deletion of bfrK or cemA increased sucrose-dependent biofilm formation in vitro. Glucose-dependent biofilm formation was particularly increased by deletion of cemK. The expression of cemK and cemR was altered by deletion of bfrK, indicating cross-talk between these two regulatory systems. These results may contribute to our understanding of the genetic factors related to the biofilm formation and competitiveness of L. reuteri in intestinal ecosystems.

  5. REGULATORY INCENTIVES TO PROMOTE THE USE OF PHOTOVOLTAIC SYSTEMS IN BRAZIL

    Directory of Open Access Journals (Sweden)

    F. K. O. M. Varella

    2012-06-01

    Full Text Available The use of photovoltaic solar energy for electricity generation has been even more considered in many countries worldwide as an excellent alternative to reduce the man-made environmental impacts, especially those associated with climate changes. In countries such as Japan, Germany, USA and other European countries, specific regulatory mechanisms have been developed to stimulate its use either through governmental programs or financial and/or tax incentives. The main common reasons on these programs are the diversification of energy sources traditionally used, namely the need to adopt a sustainable energy model, the encouragement of the photovoltaic equipment industry, an affordable technology, and a concern with the environment, mainly to the reduction of CO2 emissions. In the Brazilian case, despite the large solar resource potential, many things still need to be done and, since then only a small number of initiatives were undertaken to encourage solar photovoltaic energy, but still very small when compared to the countries mentioned above. In this sense, this paper has the purpose of presenting the evolution of the regulatory incentives concerned to the use of photovoltaic solar energy in Brazil over the years.

  6. Implementation of a laboratory information management system for environmental regulatory analyses

    Energy Technology Data Exchange (ETDEWEB)

    Spencer, W.A.; Aiken, H.B.; Spatz, T.L.; Miles, W.F.; Griffin, J.C.

    1993-09-07

    The Savannah River Technology Center created a second instance of its ORACLE based PEN LIMS to support site Environmental Restoration projects. The first instance of the database had been optimized for R&D support and did not implement rigorous sample tracking, verification, and holding times needed to support regulatory commitments. Much of the R&D instance was transferable such as the work control functions for backlog reports, work assignment sheets, and hazard communication support. A major enhancement of the regulatory LIMS was the addition of features to support a {open_quotes}standardized{close_quotes} electronic data format for environmental data reporting. The electronic format, called {open_quotes}AN92{close_quotes}, was developed by the site environmental monitoring organization and applies to both onsite and offsite environmental analytical contracts. This format incorporates EPA CLP data validation codes as well as details holding time and analytical result reporting requirements. The authors support this format by using special SQL queries to the database. The data is then automatically transferred to the environmental databases for trending and geological mapping.

  7. Detecting Hierarchical Structure in Networks

    DEFF Research Database (Denmark)

    Herlau, Tue; Mørup, Morten; Schmidt, Mikkel Nørgaard;

    2012-01-01

    a generative Bayesian model that is able to infer whether hierarchies are present or not from a hypothesis space encompassing all types of hierarchical tree structures. For efficient inference we propose a collapsed Gibbs sampling procedure that jointly infers a partition and its hierarchical structure......Many real-world networks exhibit hierarchical organization. Previous models of hierarchies within relational data has focused on binary trees; however, for many networks it is unknown whether there is hierarchical structure, and if there is, a binary tree might not account well for it. We propose....... On synthetic and real data we demonstrate that our model can detect hierarchical structure leading to better link-prediction than competing models. Our model can be used to detect if a network exhibits hierarchical structure, thereby leading to a better comprehension and statistical account the network....

  8. The effects of intrinsic noise on the behaviour of bistable cell regulatory systems under quasi-steady state conditions

    CERN Document Server

    de la Cruz, Roberto; Spill, Fabian; Alarcón, Tomás

    2015-01-01

    We analyse the effect of intrinsic fluctuations on the properties of bistable stochastic systems with time scale separation operating under1 quasi-steady state conditions. We first formulate a stochastic generalisation of the quasi-steady state approximation based on the semi-classical approximation of the partial differential equation for the generating function associated with the Chemical Master Equation. Such approximation proceeds by optimising an action functional whose associated set of Euler-Lagrange (Hamilton) equations provide the most likely fluctuation path. We show that, under appropriate conditions granting time scale separation, the Hamiltonian can be re-scaled so that the set of Hamilton equations splits up into slow and fast variables, whereby the quasi-steady state approximation can be applied. We analyse two particular examples of systems whose mean-field limit has been shown to exhibit bi-stability: an enzyme-catalysed system of two mutually-inhibitory proteins and a gene regulatory circui...

  9. Context updates are hierarchical

    Directory of Open Access Journals (Sweden)

    Anton Karl Ingason

    2016-10-01

    Full Text Available This squib studies the order in which elements are added to the shared context of interlocutors in a conversation. It focuses on context updates within one hierarchical structure and argues that structurally higher elements are entered into the context before lower elements, even if the structurally higher elements are pronounced after the lower elements. The crucial data are drawn from a comparison of relative clauses in two head-initial languages, English and Icelandic, and two head-final languages, Korean and Japanese. The findings have consequences for any theory of a dynamic semantics.

  10. In{sub 2}S{sub 3}/carbon nanofibers/Au ternary synergetic system: Hierarchical assembly and enhanced visible-light photocatalytic activity

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Xin; Shao, Changlu, E-mail: clshao@nenu.edu.cn; Li, Xinghua, E-mail: lixh781@nenu.edu.cn; Lu, Na; Wang, Kexin; Miao, Fujun; Liu, Yichun

    2015-02-11

    Graphical abstract: We describe a route to synthesize In{sub 2}S{sub 3}/CNFs/Au ternary synergetic system with high efficiency visible-light photocatalytic activity. - Highlights: • Synthesis of In{sub 2}S{sub 3}/CNFs/Au ternary synergetic system. • Enhanced visible-light photocatalytic activity. • Easy photocatalyst separation and reuse. - Abstract: In this paper, carbon nanofibers (CNFs) were successfully synthesized by electrospinning technique. Next, Au nanoparticles (NPs) were assembled on the electrospun CNFs through in situ reduction method. By using the obtained Au NPs modified CNFs (CNFs/Au) as hard template, the In{sub 2}S{sub 3}/CNFs/Au composites were synthesized through hydrothermal technique. The results showed that the super long one-dimensional (1D) CNFs (about 306 nm in average diameter) were well connected to form a nanofibrous network; and, the Au NPs with 18 nm in average diameter and In{sub 2}S{sub 3} nanosheets with 5–10 nm in thickness were uniformly grown onto the surface of CNFs. Photocatalytic studies revealed that the In{sub 2}S{sub 3}/CNFs/Au composites exhibited highest visible-light photocatalytic activities for the degradation of Rhodamine B (RB) compared with pure In{sub 2}S{sub 3} and In{sub 2}S{sub 3}/CNFs. The enhanced photocatalytic activity might arise from the high separation efficiency of photogenerated electron–hole pairs based on the positive synergetic effect between In{sub 2}S{sub 3}, CNFs and Au components in this ternary photocatalytic system. Meanwhile, the In{sub 2}S{sub 3}/CNFs/Au composites with hierarchical structure possess a strong adsorption ability towards organic dyes, which also contributed to the enhancement of photocatalytic activity. Moreover, the In{sub 2}S{sub 3}/CNFs/Au composites could be recycled easily by sedimentation due to their nanofibrous network structure.

  11. A novel processing system of sterol regulatory element-binding protein-1c regulated by polyunsaturated fatty acid.

    Science.gov (United States)

    Nakakuki, Masanori; Kawano, Hiroyuki; Notsu, Tatsuto; Imada, Kazunori; Mizuguchi, Kiyoshi; Shimano, Hitoshi

    2014-05-01

    The proteolytic cascade is the key step in transactivation of sterol regulatory element-binding proteins (SREBPs), a transcriptional factor of lipid synthesis. Proteolysis of SREBP-2 is strictly regulated by sterols, but that of SREBP-1c was not strongly sterol-regulated, but inhibited by polyunsaturated fatty acids (PUFAs). In this study, the proteolytic processing of SREBP-1 and -2 was examined by transfection studies of cDNA-encoding mutants in which all the known cleavage sites were disrupted. In cultured cells, sterol-regulated SREBP-2 processing was completely eliminated by mutation of cleavage sites. In contrast, the corresponding SREBP-1c mutants as well as wild type exhibited large amounts of cleaved products in the nuclear extracts from culture cells and murine liver in vivo. The nuclear form of the mutant SREBP-1c was induced by delipidated condition and suppressed by eicosapentaenoic acid, an n-3 PUFA, but not by sterols. This novel processing mechanism was affected by neither SREBP cleavage-activating protein (SCAP) nor insulin-induced gene (Insig)-1, unlike SREBP-2, but abolished by a serine protease inhibitor. Through analysis of deletion mutant, a site-2 protease recognition sequence (DRSR) was identified to be involved in this novel processing. These findings suggest that SREBP-1c cleavage could be subjected to a novel PUFA-regulated cleavage system in addition to the sterol-regulatory SCAP/Insig system.

  12. Two-Component Regulatory Systems – implication in the quorum sensing mechanisms and bacteriocin production in lactic acid bacteria

    Directory of Open Access Journals (Sweden)

    Lia–Mara Ditu

    2014-08-01

    Full Text Available For lactic acid bacteria, the mechanisms of quorum sensing and response are mediated by peptides or pheromones that interfere with the synthesis of antimicrobial peptides (AMP called bacteriocins, when these molecules reach a certain critical level of concentration. Generally, the synthesis and activity of pheromones is adjusted by means of a two-component regulatory system. The observation that some microorganisms, in particular lactic acid bacteria, produce bacteriocins according to the cell density, has led to the discovery of the involvement of QS mechanisms in the synthesis of these peptides. Bacteriocins synthesis is inducible, the process requiring the extracellular accumulation of peptides that functions as chemical messengers activators of bacteriocins synthesis. This minireview presents the molecular architecture and functions of two-component regulatory systems and ABC transporters implicated in the synthesis and secretion of nisin, one of the most studied bacteriocin. The elucidation of the intimate mechanisms of bacteriocins synthesis is equally of biotechnological and medical importance, opening interesting perspectives for the development of improved technologies for the production of bacteriocins with good yields, and also, for increasing the beneficial anti-infective roles of probiotic bacteria when administered in vivo.

  13. THE INDIAN PHARMACEUTICAL INDUSTRY; EVOLUTION OF REGULATORY SYSTEM AND PRESENT SCENARIO

    Directory of Open Access Journals (Sweden)

    Sarda Rohit R.

    2012-06-01

    Full Text Available Indian pharmaceutical industry evolved in true sense only after independence. Government provided the impetus to growth with the establishment of few public sector units. Healthcare facilities in India are still below standard as compared to most developed nations. Indian government is stringent on price control of Pharmaceuticals and this becomes a major hurdle for global players to enter in India but Indian patent act and new drug policy has bought a new dimension to Indian Pharmaceutical Industry. Some of the Indo-global industries like Cipla, Ranbaxy and Dr .Reddy’s are showing rapid and consistent growth with their impact worldwide. India is also turning out to be a prime destination for clinical trials. Industry today is governed by wide range of regulations and different regulatory bodies. Current article focuses on all these aspects along with regulations for new drugs, medical devices, imports etc.

  14. Massively parallel cis-regulatory analysis in the mammalian central nervous system.

    Science.gov (United States)

    Shen, Susan Q; Myers, Connie A; Hughes, Andrew E O; Byrne, Leah C; Flannery, John G; Corbo, Joseph C

    2016-02-01

    Cis-regulatory elements (CREs, e.g., promoters and enhancers) regulate gene expression, and variants within CREs can modulate disease risk. Next-generation sequencing has enabled the rapid generation of genomic data that predict the locations of CREs, but a bottleneck lies in functionally interpreting these data. To address this issue, massively parallel reporter assays (MPRAs) have emerged, in which barcoded reporter libraries are introduced into cells, and the resulting barcoded transcripts are quantified by next-generation sequencing. Thus far, MPRAs have been largely restricted to assaying short CREs in a limited repertoire of cultured cell types. Here, we present two advances that extend the biological relevance and applicability of MPRAs. First, we adapt exome capture technology to instead capture candidate CREs, thereby tiling across the targeted regions and markedly increasing the length of CREs that can be readily assayed. Second, we package the library into adeno-associated virus (AAV), thereby allowing delivery to target organs in vivo. As a proof of concept, we introduce a capture library of about 46,000 constructs, corresponding to roughly 3500 DNase I hypersensitive (DHS) sites, into the mouse retina by ex vivo plasmid electroporation and into the mouse cerebral cortex by in vivo AAV injection. We demonstrate tissue-specific cis-regulatory activity of DHSs and provide examples of high-resolution truncation mutation analysis for multiplex parsing of CREs. Our approach should enable massively parallel functional analysis of a wide range of CREs in any organ or species that can be infected by AAV, such as nonhuman primates and human stem cell-derived organoids.

  15. Systemic blood loss affects NF-kappa B regulatory mechanisms in the lungs.

    Science.gov (United States)

    Moine, P; Shenkar, R; Kaneko, D; Le Tulzo, Y; Abraham, E

    1997-07-01

    The nuclear regulatory factor (NF)-kappa B is activated in the lungs of patients with acute respiratory distress syndrome (ARDS). In experimental models of acute lung injury, activation of NF-kappa B contributes to the increased expression of immunoregulatory cytokines and other proinflammatory mediators in the lungs. Because of the important role that NF-kappa B activation appears to play in the development of acute lung injury, we examined cytoplasmic and nuclear NF-kappa B counterregulatory mechanisms in lung mononuclear cells, using a murine model in which inflammatory lung injury develops after blood loss. Sustained activation of NF-kappa B was present in lung mononuclear cells over the 4-h period after blood loss. The activation of NF-kappa B after hemorrhage was accompanied by alterations in levels of the NF-kappa B regulatory proteins I kappa B alpha and Bcl-3. Cytoplasmic and nuclear I kappa B alpha were increased and nuclear Bcl-3 was decreased during the first hour after blood loss, but, by 4 h posthemorrhage, cytoplasmic and nuclear I kappa B alpha levels were decreased and nuclear levels of Bcl-3 were increased. Inhibition of xanthine oxidase activity in otherwise unmanipulated unhemorrhaged mice resulted in increased levels of I kappa B alpha and decreased amounts of Bcl-3 in nuclear extracts from lung mononuclear cells. No changes in the levels of nuclear I kappa B alpha or Bcl-3 occurred after hemorrhage when xanthine oxidase activity was inhibited. These results demonstrate that blood loss, at least partly through xanthine oxidase-dependent mechanisms, produces alterations in the levels of both I kappa B alpha and Bcl-3 in lung mononuclear cell populations. The effects of hemorrhage on proteins that regulate activation of NF-kappa B may contribute to the frequent development of inflammatory lung injury in this setting.

  16. Evaluation of hierarchical temporal memory for a real world application

    OpenAIRE

    Melis, Wim J.C.; Chizuwa, Shuhei; Kameyama, Michitaka

    2010-01-01

    A large number of real world applications, such as user support systems, can still not be performed easily by conventional algorithms in comparison with the human brain. Such intelligence is often implemented, by using probability based systems. This paper focuses on comparing the implementation of a cellular phone intention estimation example on a Bayesian Network and Hierarchical Temporal Memory. It is found that Hierarchical Temporal Memory is a system that requires little effort for desig...

  17. Quantum transport through hierarchical structures.

    Science.gov (United States)

    Boettcher, S; Varghese, C; Novotny, M A

    2011-04-01

    The transport of quantum electrons through hierarchical lattices is of interest because such lattices have some properties of both regular lattices and random systems. We calculate the electron transmission as a function of energy in the tight-binding approximation for two related Hanoi networks. HN3 is a Hanoi network with every site having three bonds. HN5 has additional bonds added to HN3 to make the average number of bonds per site equal to five. We present a renormalization group approach to solve the matrix equation involved in this quantum transport calculation. We observe band gaps in HN3, while no such band gaps are observed in linear networks or in HN5. We provide a detailed scaling analysis near the edges of these band gaps.

  18. A Legislative Reform for the Food Safety System of China: A Regulatory Paradigm Shift and Collaborative Governance.

    Science.gov (United States)

    Han, Yonghong

    2015-01-01

    After describing the historical development of China's food safety system from the perspectives of legislation and administration, this article discusses progress in its food law (The Draft Amendments to Food Safety Law). As a further legislative reform for China's food safety system, the Draft Amendments to the Food Safety Law contain innovative institutional designs and manifest a regulatory paradigm shift from government-centered governance to collaborative governance. However, the Draft Amendments face challenges in their implementation. This article argues that developing collaborative governance for food safety in China can be a solution to these challenges. Based on theoretical and empirical studies of collaborative governance, this article proposes that the institutional design of collaborative governance should focus on providing obligations for administrative agencies in the process of food safety rule-making and standard-setting, increasing the independence of nongovernmental organizations, and building two-way electronic platforms for public participation.

  19. Hierarchical State Machines as Modular Horn Clauses

    Directory of Open Access Journals (Sweden)

    Pierre-Loïc Garoche

    2016-07-01

    Full Text Available In model based development, embedded systems are modeled using a mix of dataflow formalism, that capture the flow of computation, and hierarchical state machines, that capture the modal behavior of the system. For safety analysis, existing approaches rely on a compilation scheme that transform the original model (dataflow and state machines into a pure dataflow formalism. Such compilation often result in loss of important structural information that capture the modal behaviour of the system. In previous work we have developed a compilation technique from a dataflow formalism into modular Horn clauses. In this paper, we present a novel technique that faithfully compile hierarchical state machines into modular Horn clauses. Our compilation technique preserves the structural and modal behavior of the system, making the safety analysis of such models more tractable.

  20. Characterization of a two-component regulatory system from Acinetobacter baumannii that controls biofilm formation and cellular morphology.

    Science.gov (United States)

    Tomaras, Andrew P; Flagler, Michael J; Dorsey, Caleb W; Gaddy, Jennifer A; Actis, Luis A

    2008-11-01

    Acinetobacter baumannii forms biofilms on abiotic surfaces, a phenotype that may explain its ability to survive in nosocomial environments and to cause device-related infections in compromised patients. The biofilm proficiency of the 19606 type strain depends on the production of pili, cell-surface appendages assembled via the CsuAB-A-B-C-D-E chaperone-usher secretion system. The screening of a bank of isogenic insertion derivatives led to the identification of a biofilm-deficient derivative in which a transposon insertion disrupted a gene predicted to encode the response regulator of a two-component regulatory system. This gene, which was named bfmR, is required for the expression of the Csu pili chaperone-usher assembly system. This coding region is followed by an ORF encoding a putative sensor kinase that was named bfmS, which plays a less relevant role in biofilm formation when cells are cultured in rich medium. Further examination showed that the bfmR mutant was capable of attaching to abiotic surfaces, although to levels significantly lower than those of the parental strain, when it was cultured in a chemically defined minimal medium. Additionally, the morphology of planktonic cells of this mutant, when grown in minimal medium, was drastically affected, while adherent mutant cells were indistinguishable in shape and size from the parental strain. Together, these results indicate that BfmR is part of a two-component regulatory system that plays an important role in the morphology of A. baumannii 19606 cells and their ability to form biofilms on abiotic surfaces.

  1. Pollutant emissions from vehicles with regenerating after-treatment systems in regulatory and real-world driving cycles.

    Science.gov (United States)

    Alvarez, Robert; Weilenmann, Martin; Novak, Philippe

    2008-07-15

    Regenerating exhaust after-treatment systems are increasingly employed in passenger cars in order to comply with regulatory emission standards. These systems include pollutant storage units that occasionally have to be regenerated. The regeneration strategy applied, the resultant emission levels and their share of the emission level during normal operation mode are key issues in determining realistic overall emission factors for these cars. In order to investigate these topics, test series with four cars featuring different types of such after-treatment systems were carried out. The emission performance in legislative and real-world cycles was monitored as well as at constant speeds. The extra emissions determined during regeneration stages are presented together with the methodology applied to calculate their impact on overall emissions. It can be concluded that exhaust after-treatment systems with storage units cause substantial overall extra emissions during regeneration mode and can appreciably affect the emission factors of cars equipped with such systems, depending on the frequency of regenerations. Considering that the fleet appearance of vehicles equipped with such after-treatment systems will increase due to the evolution of statutory pollutant emission levels, extra emissions originating from regenerations of pollutant storage units consequently need to be taken into account for fleet emission inventories. Accurately quantifying these extra emissions is achieved by either conducting sufficient repetitions of emission measurements with an individual car or by considerably increasing the size of the sample of cars with comparable after-treatment systems.

  2. Dynamic regulatory on/off minimization for biological systems under internal temporal perturbations

    Directory of Open Access Journals (Sweden)

    Kleessen Sabrina

    2012-03-01

    Full Text Available Abstract Background Flux balance analysis (FBA together with its extension, dynamic FBA, have proven instrumental for analyzing the robustness and dynamics of metabolic networks by employing only the stoichiometry of the included reactions coupled with adequately chosen objective function. In addition, under the assumption of minimization of metabolic adjustment, dynamic FBA has recently been employed to analyze the transition between metabolic states. Results Here, we propose a suite of novel methods for analyzing the dynamics of (internally perturbed metabolic networks and for quantifying their robustness with limited knowledge of kinetic parameters. Following the biochemically meaningful premise that metabolite concentrations exhibit smooth temporal changes, the proposed methods rely on minimizing the significant fluctuations of metabolic profiles to predict the time-resolved metabolic state, characterized by both fluxes and concentrations. By conducting a comparative analysis with a kinetic model of the Calvin-Benson cycle and a model of plant carbohydrate metabolism, we demonstrate that the principle of regulatory on/off minimization coupled with dynamic FBA can accurately predict the changes in metabolic states. Conclusions Our methods outperform the existing dynamic FBA-based modeling alternatives, and could help in revealing the mechanisms for maintaining robustness of dynamic processes in metabolic networks over time.

  3. The regulatory system in europe with special emphasis on allergen products.

    Science.gov (United States)

    Lorenz, A R; Luttkopf, D; Seitz, R; Vieths, S

    2008-01-01

    For each medicinal product quality, safety and efficacy have to be proven to obtain a marketing authorisation. The national competent health authorities and the European Medicines Agency (EMEA) with support of the Heads of Medicines Agencies (HMA) work together to grant marketing authorisations for medicinal products. Several regulatory procedures to apply for a marketing authorisation in the European Community (EC) and associated countries exist. After approval by a national procedure a medicinal product can be marketed in only one country. If a medicinal product should enter the markets of two or more European countries of choice the application has to undergo the Mutual Recognition Procedure (MRP) or the Decentralised Procedure (DCP). A marketing authorisation granted by the Centralised Procedure (CP) is valid in the whole EC. The CP is mandatory for certain medicinal products, for example all products derived from recombinant DNA technology including recombinant allergens. The guidance documents applicable to allergen products comprise general as well as product-specific guidelines such as the Note for Guidance on Allergen Products and the Monograph on Allergen Products of the European Pharmacopoeia. So-called 'named patient products' have a special status and are applied to patients without having a marketing authorisation. Recombinant allergens as medicinal products are insufficiently covered by the existing allergen product-specific guidelines, but product-specific guidelines are in the development stage. 2008 S. Karger AG, Basel.

  4. Identification of causal genetic drivers of human disease through systems-level analysis of regulatory networks

    Science.gov (United States)

    Chen, James C.; Alvarez, Mariano J.; Talos, Flaminia; Dhruv, Harshil; Rieckhof, Gabrielle E.; Iyer, Archana; Diefes, Kristin L.; Aldape, Kenneth; Berens, Michael; Shen, Michael M.; Califano, Andrea

    2014-01-01

    SUMMARY Identification of driver mutations in human diseases is often limited by cohort size and availability of appropriate statistical models. We propose a novel framework for the systematic discovery of genetic alterations that are causal determinants of disease, by prioritizing genes upstream of functional disease drivers, within regulatory networks inferred de novo from experimental data. We tested this framework by identifying the genetic determinants of the mesenchymal subtype of glioblastoma. Our analysis uncovered KLHL9 deletions as upstream activators of two previously established master regulators of the subtype, C/EBPβ and C/EBPδ. Rescue of KLHL9 expression induced proteasomal degradation of C/EBP proteins, abrogated the mesenchymal signature, and reduced tumor viability in vitro and in vivo. Deletions of KLHL9 were confirmed in >50% of mesenchymal cases in an independent cohort, thus representing the most frequent genetic determinant of the subtype. The method generalized to study other human diseases, including breast cancer and Alzheimer’s disease. PMID:25303533

  5. Hierarchical Planning Methodology for a Supply Chain Management

    National Research Council Canada - National Science Library

    Virna Ortiz-Araya; Víctor M Albornoz

    2012-01-01

      Hierarchical production planning is a widely utilized methodology for real world capacitated production planning systems with the aim of establishing different decision-making levels of the planning...

  6. Zero harmful discharge, regulatory regime, follow-up and results. A proposal for a harmonized system.[Norway

    Energy Technology Data Exchange (ETDEWEB)

    Beck, Hans Jacob; Teigen, Staale; Weltzien, Rune; Moss, Rigmor

    2006-03-15

    The operating companies on the Norwegian Continental Shelf (NCS) have worked according to principles in the zero harmful discharge concepts for more than 5 years. Ecotoxicological information on offshore chemicals is registered in the Chems-R database in the KPD-centre operated by Novatech AS on behalf of the operators on the NCS. The chemicals are classified according to intrinsic properties (acute toxicity, bioaccumulation, biodegradation and combination of these). The color codes/categories are green (PLONOR chemicals), yellow (acceptable), red (environmental harmful) and black (not allowed to use). The system is described in the Regulations, the Activities . The Norwegian Pollution Control Agency (SFT) submits discharge permits with quotas on chemicals of red/black category. These quotas are to be followed-up by the operating companies according to internal control principles. Environmental discharge accounting systems are used to register and report discharges according to the Regulations, the Information Duty. Together with exo toxicological data from Chems-R, a follow-up system is used to detect non-conformances from the allowed quotas. Key Performance Indicators are used as incentives to achieve internal targets. By combining the regulatory systems, the discharge accounting systems, Chems-R information and the follow-up systems it is fairly easy to put a driving force towards zero harmful discharge of chemicals. The discharges of chemicals of red and black category have been reduced by approx. 75 % and 95 % respectively from 1998 to 2003 on the NCS. (Author)

  7. A model-independent approach to infer hierarchical codon substitution dynamics.

    Science.gov (United States)

    Görnerup, Olof; Jacobi, Martin Nilsson

    2010-04-23

    Codon substitution constitutes a fundamental process in molecular biology that has been studied extensively. However, prior studies rely on various assumptions, e.g. regarding the relevance of specific biochemical properties, or on conservation criteria for defining substitution groups. Ideally, one would instead like to analyze the substitution process in terms of raw dynamics, independently of underlying system specifics. In this paper we propose a method for doing this by identifying groups of codons and amino acids such that these groups imply closed dynamics. The approach relies on recently developed spectral and agglomerative techniques for identifying hierarchical organization in dynamical systems. We have applied the techniques on an empirically derived Markov model of the codon substitution process that is provided in the literature. Without system specific knowledge of the substitution process, the techniques manage to "blindly" identify multiple levels of dynamics; from amino acid substitutions (via the standard genetic code) to higher order dynamics on the level of amino acid groups. We hypothesize that the acquired groups reflect earlier versions of the genetic code. The results demonstrate the applicability of the techniques. Due to their generality, we believe that they can be used to coarse grain and identify hierarchical organization in a broad range of other biological systems and processes, such as protein interaction networks, genetic regulatory networks and food webs.

  8. A model-independent approach to infer hierarchical codon substitution dynamics

    Directory of Open Access Journals (Sweden)

    Jacobi Martin

    2010-04-01

    Full Text Available Abstract Background Codon substitution constitutes a fundamental process in molecular biology that has been studied extensively. However, prior studies rely on various assumptions, e.g. regarding the relevance of specific biochemical properties, or on conservation criteria for defining substitution groups. Ideally, one would instead like to analyze the substitution process in terms of raw dynamics, independently of underlying system specifics. In this paper we propose a method for doing this by identifying groups of codons and amino acids such that these groups imply closed dynamics. The approach relies on recently developed spectral and agglomerative techniques for identifying hierarchical organization in dynamical systems. Results We have applied the techniques on an empirically derived Markov model of the codon substitution process that is provided in the literature. Without system specific knowledge of the substitution process, the techniques manage to "blindly" identify multiple levels of dynamics; from amino acid substitutions (via the standard genetic code to higher order dynamics on the level of amino acid groups. We hypothesize that the acquired groups reflect earlier versions of the genetic code. Conclusions The results demonstrate the applicability of the techniques. Due to their generality, we believe that they can be used to coarse grain and identify hierarchical organization in a broad range of other biological systems and processes, such as protein interaction networks, genetic regulatory networks and food webs.

  9. Regulatory circuitry of TWEAK-Fn14 system and PGC-1α in skeletal muscle atrophy program

    Science.gov (United States)

    Hindi, Sajedah M.; Mishra, Vivek; Bhatnagar, Shephali; Tajrishi, Marjan M.; Ogura, Yuji; Yan, Zhen; Burkly, Linda C.; Zheng, Timothy S.; Kumar, Ashok

    2014-01-01

    Skeletal muscle wasting attributed to inactivity has significant adverse functional consequences. Accumulating evidence suggests that peroxisome proliferator-activated receptor γ coactivator 1α (PGC-1α) and TNF-like weak inducer of apoptosis (TWEAK)-Fn14 system are key regulators of skeletal muscle mass in various catabolic states. While the activation of TWEAK-Fn14 signaling causes muscle wasting, PGC-1α preserves muscle mass in several conditions, including functional denervation and aging. However, it remains unknown whether there is any regulatory interaction between PGC-1α and TWEAK-Fn14 system during muscle atrophy. Here we demonstrate that TWEAK significantly reduces the levels of PGC-1α and mitochondrial content (∼50%) in skeletal muscle. Levels of PGC-1α are significantly increased in skeletal muscle of TWEAK-knockout (KO) and Fn14-KO mice compared to wild-type mice on denervation. Transgenic (Tg) overexpression of PGC-1α inhibited progressive muscle wasting in TWEAK-Tg mice. PGC-1α inhibited the TWEAK-induced activation of NF-κB (∼50%) and dramatically reduced (∼90%) the expression of atrogenes such as MAFbx and MuRF1. Intriguingly, muscle-specific overexpression of PGC-1α also prevented the inducible expression of Fn14 in denervated skeletal muscle. Collectively, our study demonstrates that TWEAK induces muscle atrophy through repressing the levels of PGC-1α. Overexpression of PGC-1α not only blocks the TWEAK-induced atrophy program but also diminishes the expression of Fn14 in denervated skeletal muscle.—Hindi, S. M., Mishra, V., Bhatnagar, S., Tajrishi, M. M., Ogura, Y., Yan, Z., Burkly, L. C., Zheng, T. S., Kumar, A. Regulatory circuitry of TWEAK-Fn14 system and PGC-1α in skeletal muscle atrophy program. PMID:24327607

  10. Hierarchical partial order ranking.

    Science.gov (United States)

    Carlsen, Lars

    2008-09-01

    Assessing the potential impact on environmental and human health from the production and use of chemicals or from polluted sites involves a multi-criteria evaluation scheme. A priori several parameters are to address, e.g., production tonnage, specific release scenarios, geographical and site-specific factors in addition to various substance dependent parameters. Further socio-economic factors may be taken into consideration. The number of parameters to be included may well appear to be prohibitive for developing a sensible model. The study introduces hierarchical partial order ranking (HPOR) that remedies this problem. By HPOR the original parameters are initially grouped based on their mutual connection and a set of meta-descriptors is derived representing the ranking corresponding to the single groups of descriptors, respectively. A second partial order ranking is carried out based on the meta-descriptors, the final ranking being disclosed though average ranks. An illustrative example on the prioritization of polluted sites is given.

  11. Trees and Hierarchical Structures

    CERN Document Server

    Haeseler, Arndt

    1990-01-01

    The "raison d'etre" of hierarchical dustering theory stems from one basic phe­ nomenon: This is the notorious non-transitivity of similarity relations. In spite of the fact that very often two objects may be quite similar to a third without being that similar to each other, one still wants to dassify objects according to their similarity. This should be achieved by grouping them into a hierarchy of non-overlapping dusters such that any two objects in ~ne duster appear to be more related to each other than they are to objects outside this duster. In everyday life, as well as in essentially every field of scientific investigation, there is an urge to reduce complexity by recognizing and establishing reasonable das­ sification schemes. Unfortunately, this is counterbalanced by the experience of seemingly unavoidable deadlocks caused by the existence of sequences of objects, each comparatively similar to the next, but the last rather different from the first.

  12. Hierarchical Affinity Propagation

    CERN Document Server

    Givoni, Inmar; Frey, Brendan J

    2012-01-01

    Affinity propagation is an exemplar-based clustering algorithm that finds a set of data-points that best exemplify the data, and associates each datapoint with one exemplar. We extend affinity propagation in a principled way to solve the hierarchical clustering problem, which arises in a variety of domains including biology, sensor networks and decision making in operational research. We derive an inference algorithm that operates by propagating information up and down the hierarchy, and is efficient despite the high-order potentials required for the graphical model formulation. We demonstrate that our method outperforms greedy techniques that cluster one layer at a time. We show that on an artificial dataset designed to mimic the HIV-strain mutation dynamics, our method outperforms related methods. For real HIV sequences, where the ground truth is not available, we show our method achieves better results, in terms of the underlying objective function, and show the results correspond meaningfully to geographi...

  13. Optimisation by hierarchical search

    Science.gov (United States)

    Zintchenko, Ilia; Hastings, Matthew; Troyer, Matthias

    2015-03-01

    Finding optimal values for a set of variables relative to a cost function gives rise to some of the hardest problems in physics, computer science and applied mathematics. Although often very simple in their formulation, these problems have a complex cost function landscape which prevents currently known algorithms from efficiently finding the global optimum. Countless techniques have been proposed to partially circumvent this problem, but an efficient method is yet to be found. We present a heuristic, general purpose approach to potentially improve the performance of conventional algorithms or special purpose hardware devices by optimising groups of variables in a hierarchical way. We apply this approach to problems in combinatorial optimisation, machine learning and other fields.

  14. [The Influence of the Functioning of Brain Regulatory Systems onto the Voluntary Regulation of Cognitive Performance in Children. Report 2. Neuropsychological and Electrophysiological Assessment of Brain Regulatory Functions in Children Aged 10-12 with Learning Difficulties].

    Science.gov (United States)

    Semenova, O A; Machinskaya, R I

    2015-01-01

    A total number of 172 children aged 10-12 were electrophysiologically and neuropsychologically assessed in order to analyze the influence of the functioning of brain regulatory systems onto the voluntary regulation of cognitive performance during the preteen years. EEG patterns associated with the nonoptimal functioning of brain regulatory systems, particularly fronto-thalamic, limbic and fronto-striatal structures were significantly more often observed in children with learning and behavioral difficulties, as compared to the control group. Neuropsychological assessment showed that the nonoptimal functioning of different brain regulatory systems specifically affect the voluntary regulation of cognitive performance. Children with EEG patterns of fronto-thalamic nonoptimal functioning demonstrated poor voluntary regulation such as impulsiveness and difficulties in continuing the same algorithms. Children with EEG patterns of limbic nonoptimal functioning showed a less pronounced executive dysfunction manifested only in poor switching between program units within a task. Children with EEG patterns of fronto-striatal nonoptimal functioning struggled with such executive dysfunctions as motor and tactile perseverations and emotional-motivational deviations such as poor motivation and communicative skills.

  15. How hierarchical is language use?

    Science.gov (United States)

    Frank, Stefan L.; Bod, Rens; Christiansen, Morten H.

    2012-01-01

    It is generally assumed that hierarchical phrase structure plays a central role in human language. However, considerations of simplicity and evolutionary continuity suggest that hierarchical structure should not be invoked too hastily. Indeed, recent neurophysiological, behavioural and computational studies show that sequential sentence structure has considerable explanatory power and that hierarchical processing is often not involved. In this paper, we review evidence from the recent literature supporting the hypothesis that sequential structure may be fundamental to the comprehension, production and acquisition of human language. Moreover, we provide a preliminary sketch outlining a non-hierarchical model of language use and discuss its implications and testable predictions. If linguistic phenomena can be explained by sequential rather than hierarchical structure, this will have considerable impact in a wide range of fields, such as linguistics, ethology, cognitive neuroscience, psychology and computer science. PMID:22977157

  16. How hierarchical is language use?

    Science.gov (United States)

    Frank, Stefan L; Bod, Rens; Christiansen, Morten H

    2012-11-22

    It is generally assumed that hierarchical phrase structure plays a central role in human language. However, considerations of simplicity and evolutionary continuity suggest that hierarchical structure should not be invoked too hastily. Indeed, recent neurophysiological, behavioural and computational studies show that sequential sentence structure has considerable explanatory power and that hierarchical processing is often not involved. In this paper, we review evidence from the recent literature supporting the hypothesis that sequential structure may be fundamental to the comprehension, production and acquisition of human language. Moreover, we provide a preliminary sketch outlining a non-hierarchical model of language use and discuss its implications and testable predictions. If linguistic phenomena can be explained by sequential rather than hierarchical structure, this will have considerable impact in a wide range of fields, such as linguistics, ethology, cognitive neuroscience, psychology and computer science.

  17. Associative Hierarchical Random Fields.

    Science.gov (United States)

    Ladický, L'ubor; Russell, Chris; Kohli, Pushmeet; Torr, Philip H S

    2014-06-01

    This paper makes two contributions: the first is the proposal of a new model-The associative hierarchical random field (AHRF), and a novel algorithm for its optimization; the second is the application of this model to the problem of semantic segmentation. Most methods for semantic segmentation are formulated as a labeling problem for variables that might correspond to either pixels or segments such as super-pixels. It is well known that the generation of super pixel segmentations is not unique. This has motivated many researchers to use multiple super pixel segmentations for problems such as semantic segmentation or single view reconstruction. These super-pixels have not yet been combined in a principled manner, this is a difficult problem, as they may overlap, or be nested in such a way that the segmentations form a segmentation tree. Our new hierarchical random field model allows information from all of the multiple segmentations to contribute to a global energy. MAP inference in this model can be performed efficiently using powerful graph cut based move making algorithms. Our framework generalizes much of the previous work based on pixels or segments, and the resulting labelings can be viewed both as a detailed segmentation at the pixel level, or at the other extreme, as a segment selector that pieces together a solution like a jigsaw, selecting the best segments from different segmentations as pieces. We evaluate its performance on some of the most challenging data sets for object class segmentation, and show that this ability to perform inference using multiple overlapping segmentations leads to state-of-the-art results.

  18. The NAD World: a new systemic regulatory network for metabolism and aging--Sirt1, systemic NAD biosynthesis, and their importance.

    Science.gov (United States)

    Imai, Shin-Ichiro

    2009-01-01

    For the past several years, it has been demonstrated that the NAD-dependent protein deacetylase Sirt1 and nicotinamide phosphoribosyltransferase (Nampt)-mediated systemic NAD biosynthesis together play a critical role in the regulation of metabolism and possibly aging in mammals. Based on our recent studies on these two critical components, we have developed a hypothesis of a novel systemic regulatory network, named "NAD World", for mammalian aging. Conceptually, in the NAD World, systemic NAD biosynthesis mediated by intra- and extracellular Nampt functions as a driver that keeps up the pace of metabolism in multiple tissues/organs, and the NAD-dependent deacetylase Sirt1 serves as a universal mediator that executes metabolic effects in a tissue-dependent manner in response to changes in systemic NAD biosynthesis. This new concept of the NAD World provides important insights into a systemic regulatory mechanism that fundamentally connects metabolism and aging and also conveys the ideas of functional hierarchy and frailty for the regulation of metabolic robustness and aging in mammals.

  19. Regulatory guidance document

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1994-05-01

    The Office of Civilian Radioactive Waste Management (OCRWM) Program Management System Manual requires preparation of the OCRWM Regulatory Guidance Document (RGD) that addresses licensing, environmental compliance, and safety and health compliance. The document provides: regulatory compliance policy; guidance to OCRWM organizational elements to ensure a consistent approach when complying with regulatory requirements; strategies to achieve policy objectives; organizational responsibilities for regulatory compliance; guidance with regard to Program compliance oversight; and guidance on the contents of a project-level Regulatory Compliance Plan. The scope of the RGD includes site suitability evaluation, licensing, environmental compliance, and safety and health compliance, in accordance with the direction provided by Section 4.6.3 of the PMS Manual. Site suitability evaluation and regulatory compliance during site characterization are significant activities, particularly with regard to the YW MSA. OCRWM`s evaluation of whether the Yucca Mountain site is suitable for repository development must precede its submittal of a license application to the Nuclear Regulatory Commission (NRC). Accordingly, site suitability evaluation is discussed in Chapter 4, and the general statements of policy regarding site suitability evaluation are discussed in Section 2.1. Although much of the data and analyses may initially be similar, the licensing process is discussed separately in Chapter 5. Environmental compliance is discussed in Chapter 6. Safety and Health compliance is discussed in Chapter 7.

  20. Music Emotion Detection Using Hierarchical Sparse Kernel Machines

    OpenAIRE

    Yu-Hao Chin; Chang-Hong Lin; Ernestasia Siahaan; Jia-Ching Wang

    2014-01-01

    For music emotion detection, this paper presents a music emotion verification system based on hierarchical sparse kernel machines. With the proposed system, we intend to verify if a music clip possesses happiness emotion or not. There are two levels in the hierarchical sparse kernel machines. In the first level, a set of acoustical features are extracted, and principle component analysis (PCA) is implemented to reduce the dimension. The acoustical features are utilized to generate the first-l...