Sample records for greater ancestral rocky
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Smith, T. M.; Saylor, J. E.; Lapen, T. J.
2015-12-01
The Ancestral Rocky Mountains (ARM) encompass multiple crustal provinces with characteristic crystallization ages across the central and western US. Two driving mechanisms have been proposed to explain ARM deformation. (1) Ouachita-Marathon collision SE of the ARM uplifts has been linked to an E-to-W sequence of uplift and is consistent with proposed disruption of a larger Paradox-Central Colorado Trough Basin by exhumation of the Uncompahgre Uplift. Initial exhumation of the Amarillo-Wichita Uplift to the east would provide a unique ~530 Ma signal absent from source areas to the SW, and result in initial exhumation of the Ancestral Front Range. (2) Alternatively, deformation due to flat slab subduction along a hypothesized plate boundary to the SW suggests a SW-to-NE younging of exhumation. This hypothesis suggests a SW-derived Grenville signature, and would trigger uplift of the Uncompahgre first. We analyzed depositional environments, sediment dispersal patterns, and sediment and basement zircon U-Pb and (U-Th)/He ages in 3 locations in the Paradox Basin and Central Colorado Trough (CCT). The Paradox Basin exhibits an up-section transition in fluvial style that suggests a decrease in overbank stability and increased lateral migration. Similarly, the CCT records a long-term progradation of depositional environments from marginal marine to fluvial, indicating that sediment supply in both basins outpaced accommodation. Preliminary provenance results indicate little to no input from the Amarillo-Wichita uplift in either basin despite uniformly westward sediment dispersal systems in both basins. Results also show that the Uncompahgre Uplift was the source for sediment throughout Paradox Basin deposition. These observations are inconsistent with the predictions of scenario 1 above. Rather, they suggest either a synchronous response to tectonic stress across the ARM provinces or an SW-to-NE pattern of deformation.
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Thompson, J. A.; Giles, K. A.; Rowan, M. G.; Hearon, T. E., IV
2016-12-01
The Paradox Basin in southeastern Utah and southwestern Colorado is a foreland basin formed in response to flexural loading by the Pennsylvanian-aged Uncompaghre uplift during the Ancestral Rocky Mountain orogen. Thick sequences of evaporites (Paradox Formation) were deposited within the foreland basin, which interfinger with clastic sediments in the foredeep and carbonates around the basin margin. Differential loading of the Pennsylvanian-Jurassic sediments onto the evaporites drove synsedimentary halokinesis, creating a series of salt walls and adjacent minibasins within the larger foreland basin. The growing salt walls within the basin influenced patterns of sediment deposition from the Pennsylvanian through the Cretaceous. By integrating previously published mapping with recent field observations, mapping, and subsurface interpretations of well logs and 2D seismic lines, we present interpretations of the timing, geometry, and nature of halokinesis within the Paradox Basin, which record the complex salt tectonic history in the basin. Furthermore, we present recent work on the relationships between the local passive salt history and the formation of syndepositional counter-regional extensional fault systems within the foreland. These results will be integrated into a new regional salt-tectonic and stratigraphic framework of the Paradox Basin, and have broader implications for interpreting sedimentary records in other basins with a mobile substrate.
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Assessing the accuracy of ancestral protein reconstruction methods.
Directory of Open Access Journals (Sweden)
Paul D Williams
2006-06-01
Full Text Available The phylogenetic inference of ancestral protein sequences is a powerful technique for the study of molecular evolution, but any conclusions drawn from such studies are only as good as the accuracy of the reconstruction method. Every inference method leads to errors in the ancestral protein sequence, resulting in potentially misleading estimates of the ancestral protein's properties. To assess the accuracy of ancestral protein reconstruction methods, we performed computational population evolution simulations featuring near-neutral evolution under purifying selection, speciation, and divergence using an off-lattice protein model where fitness depends on the ability to be stable in a specified target structure. We were thus able to compare the thermodynamic properties of the true ancestral sequences with the properties of "ancestral sequences" inferred by maximum parsimony, maximum likelihood, and Bayesian methods. Surprisingly, we found that methods such as maximum parsimony and maximum likelihood that reconstruct a "best guess" amino acid at each position overestimate thermostability, while a Bayesian method that sometimes chooses less-probable residues from the posterior probability distribution does not. Maximum likelihood and maximum parsimony apparently tend to eliminate variants at a position that are slightly detrimental to structural stability simply because such detrimental variants are less frequent. Other properties of ancestral proteins might be similarly overestimated. This suggests that ancestral reconstruction studies require greater care to come to credible conclusions regarding functional evolution. Inferred functional patterns that mimic reconstruction bias should be reevaluated.
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Assessing the accuracy of ancestral protein reconstruction methods.
Williams, Paul D; Pollock, David D; Blackburne, Benjamin P; Goldstein, Richard A
2006-06-23
The phylogenetic inference of ancestral protein sequences is a powerful technique for the study of molecular evolution, but any conclusions drawn from such studies are only as good as the accuracy of the reconstruction method. Every inference method leads to errors in the ancestral protein sequence, resulting in potentially misleading estimates of the ancestral protein's properties. To assess the accuracy of ancestral protein reconstruction methods, we performed computational population evolution simulations featuring near-neutral evolution under purifying selection, speciation, and divergence using an off-lattice protein model where fitness depends on the ability to be stable in a specified target structure. We were thus able to compare the thermodynamic properties of the true ancestral sequences with the properties of "ancestral sequences" inferred by maximum parsimony, maximum likelihood, and Bayesian methods. Surprisingly, we found that methods such as maximum parsimony and maximum likelihood that reconstruct a "best guess" amino acid at each position overestimate thermostability, while a Bayesian method that sometimes chooses less-probable residues from the posterior probability distribution does not. Maximum likelihood and maximum parsimony apparently tend to eliminate variants at a position that are slightly detrimental to structural stability simply because such detrimental variants are less frequent. Other properties of ancestral proteins might be similarly overestimated. This suggests that ancestral reconstruction studies require greater care to come to credible conclusions regarding functional evolution. Inferred functional patterns that mimic reconstruction bias should be reevaluated.
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Legarra, Andres; Christensen, Ole F; Vitezica, Zulma G; Aguilar, Ignacio; Misztal, Ignacy
2015-06-01
Recent use of genomic (marker-based) relationships shows that relationships exist within and across base population (breeds or lines). However, current treatment of pedigree relationships is unable to consider relationships within or across base populations, although such relationships must exist due to finite size of the ancestral population and connections between populations. This complicates the conciliation of both approaches and, in particular, combining pedigree with genomic relationships. We present a coherent theoretical framework to consider base population in pedigree relationships. We suggest a conceptual framework that considers each ancestral population as a finite-sized pool of gametes. This generates across-individual relationships and contrasts with the classical view which each population is considered as an infinite, unrelated pool. Several ancestral populations may be connected and therefore related. Each ancestral population can be represented as a "metafounder," a pseudo-individual included as founder of the pedigree and similar to an "unknown parent group." Metafounders have self- and across relationships according to a set of parameters, which measure ancestral relationships, i.e., homozygozities within populations and relationships across populations. These parameters can be estimated from existing pedigree and marker genotypes using maximum likelihood or a method based on summary statistics, for arbitrarily complex pedigrees. Equivalences of genetic variance and variance components between the classical and this new parameterization are shown. Segregation variance on crosses of populations is modeled. Efficient algorithms for computation of relationship matrices, their inverses, and inbreeding coefficients are presented. Use of metafounders leads to compatibility of genomic and pedigree relationship matrices and to simple computing algorithms. Examples and code are given. Copyright © 2015 by the Genetics Society of America.
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Ancestral sequence alignment under optimal conditions
Directory of Open Access Journals (Sweden)
Brown Daniel G
2005-11-01
Full Text Available Abstract Background Multiple genome alignment is an important problem in bioinformatics. An important subproblem used by many multiple alignment approaches is that of aligning two multiple alignments. Many popular alignment algorithms for DNA use the sum-of-pairs heuristic, where the score of a multiple alignment is the sum of its induced pairwise alignment scores. However, the biological meaning of the sum-of-pairs of pairs heuristic is not obvious. Additionally, many algorithms based on the sum-of-pairs heuristic are complicated and slow, compared to pairwise alignment algorithms. An alternative approach to aligning alignments is to first infer ancestral sequences for each alignment, and then align the two ancestral sequences. In addition to being fast, this method has a clear biological basis that takes into account the evolution implied by an underlying phylogenetic tree. In this study we explore the accuracy of aligning alignments by ancestral sequence alignment. We examine the use of both maximum likelihood and parsimony to infer ancestral sequences. Additionally, we investigate the effect on accuracy of allowing ambiguity in our ancestral sequences. Results We use synthetic sequence data that we generate by simulating evolution on a phylogenetic tree. We use two different types of phylogenetic trees: trees with a period of rapid growth followed by a period of slow growth, and trees with a period of slow growth followed by a period of rapid growth. We examine the alignment accuracy of four ancestral sequence reconstruction and alignment methods: parsimony, maximum likelihood, ambiguous parsimony, and ambiguous maximum likelihood. Additionally, we compare against the alignment accuracy of two sum-of-pairs algorithms: ClustalW and the heuristic of Ma, Zhang, and Wang. Conclusion We find that allowing ambiguity in ancestral sequences does not lead to better multiple alignments. Regardless of whether we use parsimony or maximum likelihood, the
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REGEN: Ancestral Genome Reconstruction for Bacteria
Yang, Kuan; Heath, Lenwood S.; Setubal, João C.
2012-01-01
Ancestral genome reconstruction can be understood as a phylogenetic study with more details than a traditional phylogenetic tree reconstruction. We present a new computational system called REGEN for ancestral bacterial genome reconstruction at both the gene and replicon levels. REGEN reconstructs gene content, contiguous gene runs, and replicon structure for each ancestral genome. Along each branch of the phylogenetic tree, REGEN infers evolutionary events, including gene creation and deleti...
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Rocky road in the Rockies: Challenges to biodiversity
Tomback, Diana F.; Kendall, Katherine C.; Baron, Jill S.
2002-01-01
To people worldwide, the Rocky Mountains of the United States and Canada represent a last bastion of nature in its purest and rawest form-unspoiled forests teeming with elk and deer stalked by mountain lions and grizzly bears; bald eagles nesting near lakes and rivers; fat, feisty native trout in rushing mountain streams; and dazzling arrays of wildflowers in lush meadows. In fact, the total biodiversity of the Rocky Mountains is considerable, with relatively high diversity in birds, mammals, butterflies, reptiles, and conifers (Ricketts et al. 1999) and with geographic variation in the flora and fauna of alpine, forest, foothill, and adjacent shortgrass prairie and shrub communities over more than 20 degrees of latitude and more than 10' of longitude. Although the biodiversity of most North American regions has declined because of anthropogenic influences, the perception remains that the biodiversity of the Rocky Mountains is intact. This view exists in part because the Rocky Mountains are remote from urban centers, in part because so much of the land comprises protected areas such as national parks and wilderness areas, and in part because of wishful thinking-that nothing bad could happen to the biodiversity that is so much a part of the history, national self-image, legends, nature films, and movies of the United States and Canada. Despite modern technology and the homogenization and globalization of their cities and towns, at heart North Americans still regard their land as the New World, with pristine nature and untamed landscapes epitomized by the Rockies. The reality is that the biodiversity of the Rocky Mountains has not been free of anthropogenic influences since the West was settled in the 1800s, and in fact it was altered by Native Americans for centuries prior to settlement. A number of escalating problems and consequences of management choices are currently changing Rocky Mountain ecological communities at a dizzying pace. In Order to maintain some
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Robustness of ancestral sequence reconstruction to phylogenetic uncertainty.
Hanson-Smith, Victor; Kolaczkowski, Bryan; Thornton, Joseph W
2010-09-01
Ancestral sequence reconstruction (ASR) is widely used to formulate and test hypotheses about the sequences, functions, and structures of ancient genes. Ancestral sequences are usually inferred from an alignment of extant sequences using a maximum likelihood (ML) phylogenetic algorithm, which calculates the most likely ancestral sequence assuming a probabilistic model of sequence evolution and a specific phylogeny--typically the tree with the ML. The true phylogeny is seldom known with certainty, however. ML methods ignore this uncertainty, whereas Bayesian methods incorporate it by integrating the likelihood of each ancestral state over a distribution of possible trees. It is not known whether Bayesian approaches to phylogenetic uncertainty improve the accuracy of inferred ancestral sequences. Here, we use simulation-based experiments under both simplified and empirically derived conditions to compare the accuracy of ASR carried out using ML and Bayesian approaches. We show that incorporating phylogenetic uncertainty by integrating over topologies very rarely changes the inferred ancestral state and does not improve the accuracy of the reconstructed ancestral sequence. Ancestral state reconstructions are robust to uncertainty about the underlying tree because the conditions that produce phylogenetic uncertainty also make the ancestral state identical across plausible trees; conversely, the conditions under which different phylogenies yield different inferred ancestral states produce little or no ambiguity about the true phylogeny. Our results suggest that ML can produce accurate ASRs, even in the face of phylogenetic uncertainty. Using Bayesian integration to incorporate this uncertainty is neither necessary nor beneficial.
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Cascading effects of fire exclusion in the Rocky Mountain ecosystems: a literature review
Robert E. Keane; Kevin C. Ryan; Tom T. Veblen; Craig D. Allen; Jessie Logan; Brad Hawkes
2002-01-01
The health of many Rocky Mountain ecosystems is in decline because of the policy of excluding fire in the management of these ecosystems. Fire exclusion has actually made it more difficult to fight fires, and this poses greater risks to the people who fight fires and for those who live in and around Rocky Mountain forests and rangelands. This paper discusses the extent...
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Ancestral sequence reconstruction with Maximum Parsimony
Herbst, Lina; Fischer, Mareike
2017-01-01
One of the main aims in phylogenetics is the estimation of ancestral sequences based on present-day data like, for instance, DNA alignments. One way to estimate the data of the last common ancestor of a given set of species is to first reconstruct a phylogenetic tree with some tree inference method and then to use some method of ancestral state inference based on that tree. One of the best-known methods both for tree inference as well as for ancestral sequence inference is Maximum Parsimony (...
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Assessing the Accuracy of Ancestral Protein Reconstruction Methods
Williams, Paul D; Pollock, David D; Blackburne, Benjamin P; Goldstein, Richard A
2006-01-01
The phylogenetic inference of ancestral protein sequences is a powerful technique for the study of molecular evolution, but any conclusions drawn from such studies are only as good as the accuracy of the reconstruction method. Every inference method leads to errors in the ancestral protein sequence, resulting in potentially misleading estimates of the ancestral protein's properties. To assess the accuracy of ancestral protein reconstruction methods, we performed computational population evolu...
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The removal of plutonium contaminants from Rocky Flats Plant soil
International Nuclear Information System (INIS)
Sunderland, N.R.
1987-01-01
This research was undertaken to determine if the TRUclean process could effectively remove radioactive elements from soils other than derived coral. This is an interim report prior to the project report and discusses the outcome of the tests of the Rocky Flats Plant (RFP) soil. The soil tested contained plutonium particulates in the micron and submicron range. Volume reduction and activity removal were accomplished with an overall efficiency of greater than 90%. The TRUclean process is a very practical and economical solution to soil contamination problems at the Rocky Flats Plant
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Integrating Principles Underlying Ancestral Spirits Belief in ...
African Journals Online (AJOL)
, associated with ancestral spirits and its use as powerful therapeutic agent for influencing behavior or lifestyle changes. Explanatory models of attachment to ancestral spirits by living descendants are first discussed, followed by a discussion ...
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The role of macrobiota in structuring microbial communities along rocky shores
Directory of Open Access Journals (Sweden)
Catherine A. Pfister
2014-10-01
Full Text Available Rocky shore microbial diversity presents an excellent system to test for microbial habitat specificity or generality, enabling us to decipher how common macrobiota shape microbial community structure. At two coastal locations in the northeast Pacific Ocean, we show that microbial composition was significantly different between inert surfaces, the biogenic surfaces that included rocky shore animals and an alga, and the water column plankton. While all sampled entities had a core of common OTUs, rare OTUs drove differences among biotic and abiotic substrates. For the mussel Mytilus californianus, the shell surface harbored greater alpha diversity compared to internal tissues of the gill and siphon. Strikingly, a 7-year experimental removal of this mussel from tidepools did not significantly alter the microbial community structure of microbes associated with inert surfaces when compared with unmanipulated tidepools. However, bacterial taxa associated with nitrate reduction had greater relative abundance with mussels present, suggesting an impact of increased animal-derived nitrogen on a subset of microbial metabolism. Because the presence of mussels did not affect the structure and diversity of the microbial community on adjacent inert substrates, microbes in this rocky shore environment may be predominantly affected through direct physical association with macrobiota.
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Ancestral Sequence Reconstruction with Maximum Parsimony.
Herbst, Lina; Fischer, Mareike
2017-12-01
One of the main aims in phylogenetics is the estimation of ancestral sequences based on present-day data like, for instance, DNA alignments. One way to estimate the data of the last common ancestor of a given set of species is to first reconstruct a phylogenetic tree with some tree inference method and then to use some method of ancestral state inference based on that tree. One of the best-known methods both for tree inference and for ancestral sequence inference is Maximum Parsimony (MP). In this manuscript, we focus on this method and on ancestral state inference for fully bifurcating trees. In particular, we investigate a conjecture published by Charleston and Steel in 1995 concerning the number of species which need to have a particular state, say a, at a particular site in order for MP to unambiguously return a as an estimate for the state of the last common ancestor. We prove the conjecture for all even numbers of character states, which is the most relevant case in biology. We also show that the conjecture does not hold in general for odd numbers of character states, but also present some positive results for this case.
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Hobbs, Joanne K; Prentice, Erica J; Groussin, Mathieu; Arcus, Vickery L
2015-10-01
Ancestral sequence reconstruction has been widely used to study historical enzyme evolution, both from biochemical and cellular perspectives. Two properties of reconstructed ancestral proteins/enzymes are commonly reported--high thermostability and high catalytic activity--compared with their contemporaries. Increased protein stability is associated with lower aggregation rates, higher soluble protein abundance and a greater capacity to evolve, and therefore, these proteins could be considered "superior" to their contemporary counterparts. In this study, we investigate the relationship between the favourable in vitro biochemical properties of reconstructed ancestral enzymes and the organismal fitness they confer in vivo. We have previously reconstructed several ancestors of the enzyme LeuB, which is essential for leucine biosynthesis. Our initial fitness experiments revealed that overexpression of ANC4, a reconstructed LeuB that exhibits high stability and activity, was only able to partially rescue the growth of a ΔleuB strain, and that a strain complemented with this enzyme was outcompeted by strains carrying one of its descendants. When we expanded our study to include five reconstructed LeuBs and one contemporary, we found that neither in vitro protein stability nor the catalytic rate was correlated with fitness. Instead, fitness showed a strong, negative correlation with estimated evolutionary age (based on phylogenetic relationships). Our findings suggest that, for reconstructed ancestral enzymes, superior in vitro properties do not translate into organismal fitness in vivo. The molecular basis of the relationship between fitness and the inferred age of ancestral LeuB enzymes is unknown, but may be related to the reconstruction process. We also hypothesise that the ancestral enzymes may be incompatible with the other, contemporary enzymes of the metabolic network.
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... spotted fever on the foot Rocky Mountain spotted fever, petechial rash Antibodies Deer and dog tick References McElligott SC, Kihiczak GG, Schwartz RA. Rocky Mountain spotted fever and other rickettsial infections. In: Lebwohl MG, Heymann ...
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Why Meillassoux’s Speculative Materialism Struggles with Ancestrality
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Ciprian Jeler
2014-12-01
Full Text Available This paper shows that Quentin Meillassoux’s speculative materialism doesn’t offer us the means to account for the ancestral statements that the modern sciences produce, i.e. for the scientific statements about events preceding all forms of life. An analysis of the reasons why Meillassoux thinks that the problem of ancestrality problematizes the contemporary self-evidence of correlationism is first offered. The results of this analysis are then applied to speculative materialism itself and the consequences are not very promising: very much like correlationism, speculative materialism explicitly denies what I call the “generalized version of the realistic assumption of science” and, in so doing, renders scientific ancestral statements de jure unverifiable. Therefore, if correlationism is rendered suspicious by the issue of ancestrality, the same can be said of speculative materialism.
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REGEN: Ancestral Genome Reconstruction for Bacteria.
Yang, Kuan; Heath, Lenwood S; Setubal, João C
2012-07-18
Ancestral genome reconstruction can be understood as a phylogenetic study with more details than a traditional phylogenetic tree reconstruction. We present a new computational system called REGEN for ancestral bacterial genome reconstruction at both the gene and replicon levels. REGEN reconstructs gene content, contiguous gene runs, and replicon structure for each ancestral genome. Along each branch of the phylogenetic tree, REGEN infers evolutionary events, including gene creation and deletion and replicon fission and fusion. The reconstruction can be performed by either a maximum parsimony or a maximum likelihood method. Gene content reconstruction is based on the concept of neighboring gene pairs. REGEN was designed to be used with any set of genomes that are sufficiently related, which will usually be the case for bacteria within the same taxonomic order. We evaluated REGEN using simulated genomes and genomes in the Rhizobiales order.
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... with facebook share with twitter share with linkedin Rocky Mountain Spotted Fever Credit: CDC A male cayenne tick, Amblyomma cajennense, ... and New Mexico. Why Is the Study of Rocky Mountain Spotted Fever a Priority for NIAID? Tickborne diseases are becoming ...
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Mortality among plutonium and other workers at Rocky Flats
International Nuclear Information System (INIS)
Wilkinson, G.S.; Acquavella, J.F.; Reyes, M.; Tietjen, G.L.; Wiggs, L.d.; Voelz, G.L.
1985-01-01
A detailed study of mortality and radiation exposure for Rocky Flats workers was reported at the Sixteenth Mid-Year Topical Symposium of the Health Physics Society in January 1983. Significantly fewer deaths were found than were expected due to all causes, all malignant neoplasms, lung cancer, and cancer of the digestive organs. No bone cancers were observed and cancers commonly associated with radiation exposure were not more frequent than expected. Significantly more deaths than expected were observed for two causes, cancer of the prostate and benign and unspecified neoplasms. Further investigation revealed that the deaths from benign and unspecified neoplasms all involved intracranial tumors. A case control study found no association between these brain tumors and exposure to radiation, including plutonium depositions or type of occupation. The excess deaths from intracranial tumors remain unexplained but do not appear to be associated with employment at Rocky Flats. Relative risks among Rocky Flats workers with cumulative plutonium depositions of 2 nCi or more did not indicate a significantly greater risk of death among workers exposed to plutonium than among unexposed workers. Similar results were found for workers with cumulative radiation exposure of at least 1 rem. 2 references, 3 tables
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REGEN: Ancestral Genome Reconstruction for Bacteria
Directory of Open Access Journals (Sweden)
João C. Setubal
2012-07-01
Full Text Available Ancestral genome reconstruction can be understood as a phylogenetic study with more details than a traditional phylogenetic tree reconstruction. We present a new computational system called REGEN for ancestral bacterial genome reconstruction at both the gene and replicon levels. REGEN reconstructs gene content, contiguous gene runs, and replicon structure for each ancestral genome. Along each branch of the phylogenetic tree, REGEN infers evolutionary events, including gene creation and deletion and replicon fission and fusion. The reconstruction can be performed by either a maximum parsimony or a maximum likelihood method. Gene content reconstruction is based on the concept of neighboring gene pairs. REGEN was designed to be used with any set of genomes that are sufficiently related, which will usually be the case for bacteria within the same taxonomic order. We evaluated REGEN using simulated genomes and genomes in the Rhizobiales order.
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Numerical Modeling of Large-Scale Rocky Coastline Evolution
Limber, P.; Murray, A. B.; Littlewood, R.; Valvo, L.
2008-12-01
Seventy-five percent of the world's ocean coastline is rocky. On large scales (i.e. greater than a kilometer), many intertwined processes drive rocky coastline evolution, including coastal erosion and sediment transport, tectonics, antecedent topography, and variations in sea cliff lithology. In areas such as California, an additional aspect of rocky coastline evolution involves submarine canyons that cut across the continental shelf and extend into the nearshore zone. These types of canyons intercept alongshore sediment transport and flush sand to abyssal depths during periodic turbidity currents, thereby delineating coastal sediment transport pathways and affecting shoreline evolution over large spatial and time scales. How tectonic, sediment transport, and canyon processes interact with inherited topographic and lithologic settings to shape rocky coastlines remains an unanswered, and largely unexplored, question. We will present numerical model results of rocky coastline evolution that starts with an immature fractal coastline. The initial shape is modified by headland erosion, wave-driven alongshore sediment transport, and submarine canyon placement. Our previous model results have shown that, as expected, an initial sediment-free irregularly shaped rocky coastline with homogeneous lithology will undergo smoothing in response to wave attack; headlands erode and mobile sediment is swept into bays, forming isolated pocket beaches. As this diffusive process continues, pocket beaches coalesce, and a continuous sediment transport pathway results. However, when a randomly placed submarine canyon is introduced to the system as a sediment sink, the end results are wholly different: sediment cover is reduced, which in turn increases weathering and erosion rates and causes the entire shoreline to move landward more rapidly. The canyon's alongshore position also affects coastline morphology. When placed offshore of a headland, the submarine canyon captures local sediment
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Long-range Rocky Flats utilization study
International Nuclear Information System (INIS)
1983-02-01
The purpose of this Study was to provide information concerning the Rocky Flats Plant and its operations that will be useful to the Nation's decision-makers in determining the long-range future of the Plant. This Study was conducted under the premise that national defense policy must be supported and, accordingly, the capabilities at Rocky Flats must be maintained there or at some other location(s). The Study, therefore, makes no attempt to speculate on how possible future changes in national defense policy might affect decisions regarding the utilization of Rocky Flats. Factors pertinent to decisions regarding Rocky Flats, which are included in the Study, are: physical condition of the Plant and its vulnerabilities to natural phenomena; risks associated with plutonium to Plant workers and the public posed by postulated natural phenomena and operational accidents; identification of alternative actions regarding the future use of the Rocky Flats Plant with associated costs and time scales; local socioeconomic impacts if Rocky Flats operations were relocated; and potential for other uses if Rocky Flats facilities were vacated. The results of the tasks performed in support of this Study are summarized in the context of these five factors
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Resolution effects in reconstructing ancestral genomes.
Zheng, Chunfang; Jeong, Yuji; Turcotte, Madisyn Gabrielle; Sankoff, David
2018-05-09
The reconstruction of ancestral genomes must deal with the problem of resolution, necessarily involving a trade-off between trying to identify genomic details and being overwhelmed by noise at higher resolutions. We use the median reconstruction at the synteny block level, of the ancestral genome of the order Gentianales, based on coffee, Rhazya stricta and grape, to exemplify the effects of resolution (granularity) on comparative genomic analyses. We show how decreased resolution blurs the differences between evolving genomes, with respect to rate, mutational process and other characteristics.
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Sudo, Yuka; Matsuo, Kiyotaka; Tetsuo, Tomoyuki; Tsutsumi, Satoshi; Ohkura, Masamichi; Nakai, Junichi; Uezono, Yasuhito
2010-01-01
The frequency of the allele containing three derived nonsynonymous SNPs (157C, 378M, 681M) of the gene encoding calcium permeable TRPV6 channels expressed in the intestine has been increased by positive selection in non-African populations. To understand the nature of these SNPs, we compared the properties of Ca²+ influx of ancestral (in African populations) and derived-TRPV6 (in non-African populations) channels with electrophysiological, Ca²+-imaging, and morphological methods using both the Xenopus oocyte and mammalian cell expression systems. Functional electrophysiological and Ca²+-imaging analyses indicated that the derived-TRPV6 elicited more Ca²+ influx than the ancestral one in TRPV6-expressing cells where both channels were equally expressed in the cells. Ca²+-inactivation properties in the ancestral- and derived-TRPV6 were almost the same. Furthermore, fluorescence resonance energy transfer (FRET) analysis showed that both channels have similar multimeric formation properties, suggesting that derived-TRPV6 itself could cause higher Ca²+ influx. These findings suggest that populations having derived-TRPV6 in non-African areas may absorb higher Ca²+ from the intestine than ancestral-TRPV6 in the African area.
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Rocky Flats Compliance Program
International Nuclear Information System (INIS)
1994-02-01
The Department of Energy (DOE) established the Office of Technology Development (EM-50) (OTD) as an element of Environmental Restoration and Waste Management (EM) in November 1989. The primary objective of the Office of Technology Development, Rocky Flats Compliance Program (RFCP), is to develop altemative treatment technologies for mixed low-level waste (wastes containing both hazardous and radioactive components) to use in bringing the Rocky Flats Plant (RFP) into compliance with Federal and state regulations and agreements. Approximately 48,000 cubic feet of untreated low-level mixed waste, for which treatment has not been specified, are stored at the RFP. The cleanup of the Rocky Flats site is driven by agreements between DOE, the Environmental Protection Agency (EPA), and the Colorado Department of Health (CDH). Under these agreements, a Comprehensive Treatment and Management Plan (CTMP) was drafted to outline the mechanisms by which RFP will achieve compliance with the regulations and agreements. This document describes DOE's strategy to treat low-level mixed waste to meet Land Disposal Restrictions and sets specific milestones related to the regulatory aspects of technology development. These milestones detail schedules for the development of technologies to treat all of the mixed wastes at the RFP. Under the Federal Facilities Compliance Act (FFCA), the CTMP has been incorporated into Rocky Flats Plant Conceptual Site Treatment Plan (CSTP). The CSTP will become the Rocky Flats Plant site Treatment Plan in 1995 and will supersede the CTMP
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Wind energy resource atlas. Volume 8. The southern Rocky Mountain region
Energy Technology Data Exchange (ETDEWEB)
Andersen, S.R.; Freeman, D.L.; Hadley, D.L.; Elliott, D.L.; Barchet, W.R.; George, R.L.
1981-03-01
The Southern Rocky Mountain atlas assimilates five collections of wind resource data: one for the region and one for each of the four states that compose the Southern Rocky Mountain region (Arizona, Colorado, New Mexico, and Utah). At the state level, features of the climate, topography and wind resource are discussed in greater detail than is provided in the regional discussion, and the data locations on which the assessment is based are mapped. Variations, over several time scales, in the wind resource at selected stations in each state are shown on graphs of monthly average and interannual wind speed and power, and hourly average wind speed for each season. Other graphs present speed, direction, and duration frequencies of the wind at these locations.
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New summer areas and mixing of two greater sandhill crane populations in the Intermountain West
Collins, Daniel P.; Grisham, Blake A.; Conring, Courtenay M.; Knetter, Jeffrey M.; Conway, Warren C.; Carleton, Scott A.; Boggie, Matthew A.
2016-01-01
Population delineation throughout the annual life cycle for migratory birds is needed to formulate regional and national management and conservation strategies. Despite being well studied continentally, connectivity of sandhill crane Grus canadensis populations throughout the western portion of their North American range remains poorly described. Our objectives were to 1) use global positioning system satellite transmitter terminals to identify summer distributions for the Lower Colorado River Valley Population of greater sandhill cranes Grus canadensis tabida and 2) determine whether intermingling occurs among any of the western greater sandhill crane populations: Rocky Mountain Population, Lower Colorado River Valley Population, and Central Valley Population. Capture and marking occurred during winter and summer on private lands in California and Idaho as well as on two National Wildlife Refuges: Cibola and Sonny Bono Salton Sea National Wildlife Refuges. A majority of marked greater sandhill cranes summered in what is established Lower Colorado River Valley Population breeding areas in northeastern Nevada and southwestern Idaho. A handful of greater sandhill cranes summered outside of traditional breeding areas in west-central Idaho around Cascade Reservoir near Donnelly and Cascade, Idaho. For example, a greater sandhill crane colt captured near Donnelly in July 2014 survived to winter migration and moved south to areas associated with the Rocky Mountain Population. The integration of the greater sandhill crane colt captured near Donnelly provides the first evidence of potential intermingling between the Lower Colorado River Population and Rocky Mountain Population. We suggest continued marking and banding efforts of all three western populations of greater sandhill cranes will accurately delineate population boundaries and connectivity and inform management decisions for the three populations.
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Ancestrality and evolution of trait syndromes in finches (Fringillidae).
Ponge, Jean-François; Zuccon, Dario; Elias, Marianne; Pavoine, Sandrine; Henry, Pierre-Yves; Théry, Marc; Guilbert, Éric
2017-12-01
Species traits have been hypothesized by one of us (Ponge, 2013) to evolve in a correlated manner as species colonize stable, undisturbed habitats, shifting from "ancestral" to "derived" strategies. We predicted that generalism, r-selection, sexual monomorphism, and migration/gregariousness are the ancestral states (collectively called strategy A) and evolved correlatively toward specialism, K-selection, sexual dimorphism, and residence/territoriality as habitat stabilized (collectively called B strategy). We analyzed the correlated evolution of four syndromes, summarizing the covariation between 53 traits, respectively, involved in ecological specialization, r-K gradient, sexual selection, and dispersal/social behaviors in 81 species representative of Fringillidae, a bird family with available natural history information and that shows variability for all these traits. The ancestrality of strategy A was supported for three of the four syndromes, the ancestrality of generalism having a weaker support, except for the core group Carduelinae (69 species). It appeared that two different B-strategies evolved from the ancestral state A, both associated with highly predictable environments: one in poorly seasonal environments, called B1, with species living permanently in lowland tropics, with "slow pace of life" and weak sexual dimorphism, and one in highly seasonal environments, called B2, with species breeding out-of-the-tropics, migratory, with a "fast pace of life" and high sexual dimorphism.
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Ancestral gene reconstruction and synthesis of ancient rhodopsins in the laboratory.
Chang, Belinda S W
2003-08-01
Laboratory synthesis of ancestral proteins offers an intriguing opportunity to study the past directly. The development of Bayesian methods to infer ancestral sequences, combined with advances in models of molecular evolution, and synthetic gene technology make this an increasingly promising approach in evolutionary studies of molecular function. Visual pigments form the first step in the biochemical cascade of events in the retina in all animals known to possess visual capabilities. In vertebrates, the necessity of spanning a dynamic range of light intensities of many orders of magnitude has given rise to two different types of photoreceptors, rods specialized for dim-light conditions, and cones for daylight and color vision. These photoreceptors contain different types of visual pigment genes. Reviewed here are methods of inferring ancestral sequences, chemical synthesis of artificial ancestral genes in the laboratory, and applications to the evolution of vertebrate visual systems and the experimental recreation of an archosaur rod visual pigment. The ancestral archosaurs gave rise to several notable lineages of diapsid reptiles, including the birds and the dinosaurs, and would have existed over 200 MYA. What little is known of their physiology comes from fossil remains, and inference based on the biology of their living descendants. Despite its age, an ancestral archosaur pigment was successfully recreated in the lab, and showed interesting properties of its wavelength sensitivity that may have implications for the visual capabilities of the ancestral archosaurs in dim light.
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WARACS: Wrappers to Automate the Reconstruction of Ancestral Character States.
Gruenstaeudl, Michael
2016-02-01
Reconstructions of ancestral character states are among the most widely used analyses for evaluating the morphological, cytological, or ecological evolution of an organismic lineage. The software application Mesquite remains the most popular application for such reconstructions among plant scientists, even though its support for automating complex analyses is limited. A software tool is needed that automates the reconstruction and visualization of ancestral character states with Mesquite and similar applications. A set of command line-based Python scripts was developed that (a) communicates standardized input to and output from the software applications Mesquite, BayesTraits, and TreeGraph2; (b) automates the process of ancestral character state reconstruction; and (c) facilitates the visualization of reconstruction results. WARACS provides a simple tool that streamlines the reconstruction and visualization of ancestral character states over a wide array of parameters, including tree distribution, character state, and optimality criterion.
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Symposium 9: Rocky Mountain futures: preserving, utilizing, and sustaining Rocky Mountain ecosystems
Baron, Jill S.; Seastedt, Timothy; Fagre, Daniel B.; Hicke, Jeffrey A.; Tomback, Diana; Garcia, Elizabeth; Bowen, Zachary H.; Logan, Jesse A.
2013-01-01
In 2002 we published Rocky Mountain Futures, an Ecological Perspective (Island Press) to examine the cumulative ecological effects of human activity in the Rocky Mountains. We concluded that multiple local activities concerning land use, hydrologic manipulation, and resource extraction have altered ecosystems, although there were examples where the “tyranny of small decisions” worked in a positive way toward more sustainable coupled human/environment interactions. Superimposed on local change was climate change, atmospheric deposition of nitrogen and other pollutants, regional population growth, and some national management policies such as fire suppression.
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Why Meillassoux’s Speculative Materialism Struggles with Ancestrality
Ciprian Jeler
2014-01-01
This paper shows that Quentin Meillassoux’s speculative materialism doesn’t offer us the means to account for the ancestral statements that the modern sciences produce, i.e. for the scientific statements about events preceding all forms of life. An analysis of the reasons why Meillassoux thinks that the problem of ancestrality problematizes the contemporary self-evidence of correlationism is first offered. The results of this analysis are then applied to speculative materialism itself and the...
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Enzyme functional evolution through improved catalysis of ancestrally nonpreferred substrates
Huang, Ruiqi; Hippauf, Frank; Rohrbeck, Diana; Haustein, Maria; Wenke, Katrin; Feike, Janie; Sorrelle, Noah; Piechulla, Birgit; Barkman, Todd J.
2012-01-01
In this study, we investigated the role for ancestral functional variation that may be selected upon to generate protein functional shifts using ancestral protein resurrection, statistical tests for positive selection, forward and reverse evolutionary genetics, and enzyme functional assays. Data are presented for three instances of protein functional change in the salicylic acid/benzoic acid/theobromine (SABATH) lineage of plant secondary metabolite-producing enzymes. In each case, we demonstrate that ancestral nonpreferred activities were improved upon in a daughter enzyme after gene duplication, and that these functional shifts were likely coincident with positive selection. Both forward and reverse mutagenesis studies validate the impact of one or a few sites toward increasing activity with ancestrally nonpreferred substrates. In one case, we document the occurrence of an evolutionary reversal of an active site residue that reversed enzyme properties. Furthermore, these studies show that functionally important amino acid replacements result in substrate discrimination as reflected in evolutionary changes in the specificity constant (kcat/KM) for competing substrates, even though adaptive substitutions may affect KM and kcat separately. In total, these results indicate that nonpreferred, or even latent, ancestral protein activities may be coopted at later times to become the primary or preferred protein activities. PMID:22315396
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Animal regeneration: ancestral character or evolutionary novelty?
Slack, Jonathan Mw
2017-09-01
An old question about regeneration is whether it is an ancestral character which is a general property of living matter, or whether it represents a set of specific adaptations to the different circumstances faced by different types of animal. In this review, some recent results on regeneration are assessed to see if they can throw any new light on this question. Evidence in favour of an ancestral character comes from the role of Wnt and bone morphogenetic protein signalling in controlling the pattern of whole-body regeneration in acoels, which are a basal group of bilaterian animals. On the other hand, there is some evidence for adaptive acquisition or maintenance of the regeneration of appendages based on the occurrence of severe non-lethal predation, the existence of some novel genes in regenerating organisms, and differences at the molecular level between apparently similar forms of regeneration. It is tentatively concluded that whole-body regeneration is an ancestral character although has been lost from most animal lineages. Appendage regeneration is more likely to represent a derived character resulting from many specific adaptations. © 2017 The Author.
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Taylor, Janis L.
2012-01-01
The Canadian Rockies Ecoregion covers approximately 18,494 km2 (7,141 mi2) in northwestern Montana (Omernik, 1987; U.S. Environmental Protection Agency, 1997). The east side of the ecoregion is bordered by the Montana Valley and Foothill Prairies Ecoregion, which also forms a large part of the western border of the ecoregion. In addition, the Northern Rockies Ecoregion wraps around the ecoregion to the northwest and south (fig. 1). As the name implies, the Canadian Rocky Mountains are located mostly in Canada, straddling the border between Alberta and British Columbia. However, this ecoregion only includes the part of the northern Rocky Mountains that is in the United States. This ecoregion is characterized by steep, high-elevation mountain ranges similar to most of the rest of the Rocky Mountains. Compared to the Northern Rockies Ecoregion, however, the Canadian Rockies Ecoregion reaches higher elevations and contains a greater proportion of perennial snow and ice (Omernik, 1987) (fig. 2). Over the years, this section of the Rocky Mountains has garnered many different names, including “Crown of the Continent” by George Bird Grinnell (Waldt, 2008) and “Backbone of the World” by the Blackfeet (Pikuni) Nation. Throughout the ecoregion, montane, subalpine, and alpine ecosystems have distinct flora and fauna elevation zones. Glaciers, permanent snowfields, and seasonal snowpack are found at the highest elevations. Spring and summer runoff fills lakes and tarns that form the headwaters of numerous streams and rivers, including the Columbia and Missouri Rivers that flow west and east, respectively, from the Continental Divide.
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Reproductive function in mice exposed to ancestral and direct irradiation
International Nuclear Information System (INIS)
Nash, D.J.; Sprackling, L.S.
1978-01-01
Reproduction was studied in 13 inbred strains of mice that had been exposed continuously to 60 Co gamma radiation for varying numbers of generations. At weaning the mice were removed from the irradiation chamber and were tested for reproductive performance. Ancestral and direct levels of irradiation were determined for each animal. Each irradiated or control female was scored as fertile or sterile, and in utero litter counts were made in pregnant females that were dissected past the 10th day of pregnancy. The number of resorptions, dead embryos, and live embryos were counted, and the ratio of living embryos to the total number of embryos was determined for each litter. The overall fertility curves were sigmoid in the range of doses below those which caused complete sterility, which indicated some sort of cumulative damage. In 11 of the 13 strains studied, an increase in ancestral and/or direct irradiation led to significant decreases in fertility. The means of the number alive in the litters for the control and irradiated mice in each strain showed a definite trend toward fewer live mice in utero after irradiation. Least-squares analyses of variance were made to detect possible effects of any of six irradiation variables (ancestral linear, ancestral quadratic, ancestral cubic, direct linear, direct quadratic, or direct cubic) or of strain differences on total litter size and on ratio. Strain effects were significant in each instance. Litter size was more likely to be affected by radiation variables than ratios were
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Rocky Mountain spotted fever in children.
Woods, Charles R
2013-04-01
Rocky Mountain spotted fever is typically undifferentiated from many other infections in the first few days of illness. Treatment should not be delayed pending confirmation of infection when Rocky Mountain spotted fever is suspected. Doxycycline is the drug of choice even for infants and children less than 8 years old. Copyright © 2013 Elsevier Inc. All rights reserved.
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Rocky Mountain Spotted Fever: Statistics and Epidemiology
... Search Form Controls Cancel Submit Search the CDC Rocky Mountain Spotted Fever (RMSF) Note: Javascript is disabled or is not ... message, please visit this page: About CDC.gov . Rocky Mountain Spotted Fever (RMSF) Transmission Signs and Symptoms Diagnosis and Testing ...
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Akanuma, Satoshi
2017-08-06
Understanding the evolution of ancestral life, and especially the ability of some organisms to flourish in the variable environments experienced in Earth's early biosphere, requires knowledge of the characteristics and the environment of these ancestral organisms. Information about early life and environmental conditions has been obtained from fossil records and geological surveys. Recent advances in phylogenetic analysis, and an increasing number of protein sequences available in public databases, have made it possible to infer ancestral protein sequences possessed by ancient organisms. However, the in silico studies that assess the ancestral base content of ribosomal RNAs, the frequency of each amino acid in ancestral proteins, and estimate the environmental temperatures of ancient organisms, show conflicting results. The characterization of ancestral proteins reconstructed in vitro suggests that ancient organisms had very thermally stable proteins, and therefore were thermophilic or hyperthermophilic. Experimental data supports the idea that only thermophilic ancestors survived the catastrophic increase in temperature of the biosphere that was likely associated with meteorite impacts during the early history of Earth. In addition, by expanding the timescale and including more ancestral proteins for reconstruction, it appears as though the Earth's surface temperature gradually decreased over time, from Archean to present.
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Effects of Climate Change on Cultural Resources in the Northern Rockies Region [Chapter 12
Carl M. Davis
2018-01-01
People have inhabited the Northern Rocky Mountains of the United States since the close of the last Pleistocene glacial period, some 14,000 years B.P. (Fagan 1990; Meltzer 2009). Evidence of this ancient and more recent human occupation is found throughout the Forest Service, U.S. Department of Agriculture (USFS) Northern Region and the Greater Yellowstone Area,...
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Effects of climate change on ecosystem services in the Northern Rockies Region [Chapter 11
Travis Warziniack; Megan Lawson; S. Karen Dante-Wood
2018-01-01
In this chapter, we focus on the ecosystem services provided to people who visit, live adjacent to, or otherwise benefit from natural resources on public lands. Communities in the Forest Service, U.S. Department of Agriculture (USFS) Northern Region and the Greater Yellowstone Area (GYA), hereafter called the Northern Rockies region, are highly dependent on ecosystem...
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Musculature in sipunculan worms: ontogeny and ancestral states.
Schulze, Anja; Rice, Mary E
2009-01-01
Molecular phylogenetics suggests that the Sipuncula fall into the Annelida, although they are morphologically very distinct and lack segmentation. To understand the evolutionary transformations from the annelid to the sipunculan body plan, it is important to reconstruct the ancestral states within the respective clades at all life history stages. Here we reconstruct the ancestral states for the head/introvert retractor muscles and the body wall musculature in the Sipuncula using Bayesian statistics. In addition, we describe the ontogenetic transformations of the two muscle systems in four sipunculan species with different developmental modes, using F-actin staining with fluorescent-labeled phalloidin in conjunction with confocal laser scanning microscopy. All four species, which have smooth body wall musculature and less than the full set of four introvert retractor muscles as adults, go through developmental stages with four retractor muscles that are eventually reduced to a lower number in the adult. The circular and sometimes the longitudinal body wall musculature are split into bands that later transform into a smooth sheath. Our ancestral state reconstructions suggest with nearly 100% probability that the ancestral sipunculan had four introvert retractor muscles, longitudinal body wall musculature in bands and circular body wall musculature arranged as a smooth sheath. Species with crawling larvae have more strongly developed body wall musculature than those with swimming larvae. To interpret our findings in the context of annelid evolution, a more solid phylogenetic framework is needed for the entire group and more data on ontogenetic transformations of annelid musculature are desirable.
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Goolsby, Eric W
2017-04-01
Ancestral state reconstruction is a method used to study the evolutionary trajectories of quantitative characters on phylogenies. Although efficient methods for univariate ancestral state reconstruction under a Brownian motion model have been described for at least 25 years, to date no generalization has been described to allow more complex evolutionary models, such as multivariate trait evolution, non-Brownian models, missing data, and within-species variation. Furthermore, even for simple univariate Brownian motion models, most phylogenetic comparative R packages compute ancestral states via inefficient tree rerooting and full tree traversals at each tree node, making ancestral state reconstruction extremely time-consuming for large phylogenies. Here, a computationally efficient method for fast maximum likelihood ancestral state reconstruction of continuous characters is described. The algorithm has linear complexity relative to the number of species and outperforms the fastest existing R implementations by several orders of magnitude. The described algorithm is capable of performing ancestral state reconstruction on a 1,000,000-species phylogeny in fewer than 2 s using a standard laptop, whereas the next fastest R implementation would take several days to complete. The method is generalizable to more complex evolutionary models, such as phylogenetic regression, within-species variation, non-Brownian evolutionary models, and multivariate trait evolution. Because this method enables fast repeated computations on phylogenies of virtually any size, implementation of the described algorithm can drastically alleviate the computational burden of many otherwise prohibitively time-consuming tasks requiring reconstruction of ancestral states, such as phylogenetic imputation of missing data, bootstrapping procedures, Expectation-Maximization algorithms, and Bayesian estimation. The described ancestral state reconstruction algorithm is implemented in the Rphylopars
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WARACS: Wrappers to Automate the Reconstruction of Ancestral Character States1
Gruenstaeudl, Michael
2016-01-01
Premise of the study: Reconstructions of ancestral character states are among the most widely used analyses for evaluating the morphological, cytological, or ecological evolution of an organismic lineage. The software application Mesquite remains the most popular application for such reconstructions among plant scientists, even though its support for automating complex analyses is limited. A software tool is needed that automates the reconstruction and visualization of ancestral character states with Mesquite and similar applications. Methods and Results: A set of command line–based Python scripts was developed that (a) communicates standardized input to and output from the software applications Mesquite, BayesTraits, and TreeGraph2; (b) automates the process of ancestral character state reconstruction; and (c) facilitates the visualization of reconstruction results. Conclusions: WARACS provides a simple tool that streamlines the reconstruction and visualization of ancestral character states over a wide array of parameters, including tree distribution, character state, and optimality criterion. PMID:26949580
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Radiation monitor training program at Rocky Flats
International Nuclear Information System (INIS)
Medina, L.C.; Kittinger, W.D.; Vogel, R.M.
The Rocky Flats Radiation Monitor Training Program is tailored to train new health physics personnel in the field of radiation monitoring. The purpose of the prescribed materials and media is to be consistent in training in all areas of Rocky Flats radiation monitoring job involvement
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Schrago, Carlos G
2014-08-01
Reliable estimates of ancestral effective population sizes are necessary to unveil the population-level phenomena that shaped the phylogeny and molecular evolution of the African great apes. Although several methods have previously been applied to infer ancestral effective population sizes, an analysis of the influence of the selective regime on the estimates of ancestral demography has not been thoroughly conducted. In this study, three independent data sets under different selective regimes were used were composed to tackle this issue. The results showed that selection had a significant impact on the estimates of ancestral effective population sizes of the African great apes. The inference of the ancestral demography of African great apes was affected by the selection regime. The effects, however, were not homogeneous along the ancestral populations of great apes. The effective population size of the ancestor of humans and chimpanzees was more impacted by the selection regime when compared to the same parameter in the ancestor of humans, chimpanzees and gorillas. Because the selection regime influenced the estimates of ancestral effective population size, it is reasonable to assume that a portion of the discrepancy found in previous studies that inferred the ancestral effective population size may be attributable to the differential action of selection on the genes sampled.
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Wu, Yonghua; Wang, Haifeng; Hadly, Elizabeth A
2017-04-20
Nocturnality is a key evolutionary innovation of mammals that enables mammals to occupy relatively empty nocturnal niches. Invasion of ancestral mammals into nocturnality has long been inferred from the phylogenetic relationships of crown Mammalia, which is primarily nocturnal, and crown Reptilia, which is primarily diurnal, although molecular evidence for this is lacking. Here we used phylogenetic analyses of the vision genes involved in the phototransduction pathway to predict the diel activity patterns of ancestral mammals and reptiles. Our results demonstrated that the common ancestor of the extant Mammalia was dominated by positive selection for dim-light vision, supporting the predominate nocturnality of the ancestral mammals. Further analyses showed that the nocturnality of the ancestral mammals was probably derived from the predominate diurnality of the ancestral amniotes, which featured strong positive selection for bright-light vision. Like the ancestral amniotes, the common ancestor of the extant reptiles and various taxa in Squamata, one of the main competitors of the temporal niches of the ancestral mammals, were found to be predominate diurnality as well. Despite this relatively apparent temporal niche partitioning between ancestral mammals and the relevant reptiles, our results suggested partial overlap of their temporal niches during crepuscular periods.
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Rocky Mountain Research Station: 2011 Annual Accomplishments
Rick Fletcher
2011-01-01
The Rocky Mountain Research Station is one of seven regional units that make up the USDA Forest Service Research and Development organization  the most extensive natural resources research organization in the world. We maintain 12 field laboratories throughout a 12-state territory encompassing the Great Basin, Southwest, Rocky Mountains, and parts of the Great Plains...
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Rocky Mountain Research Station: 2010 Research Accomplishments
Rick Fletcher
2010-01-01
The Rocky Mountain Research Station is one of seven regional units that make up the USDA Forest Service Research and Development organization  the most extensive natural resources research organization in the world. We maintain 12 field laboratories throughout a 12-state territory encompassing the Great Basin, Southwest, Rocky Mountains, and parts of the Great Plains...
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International Nuclear Information System (INIS)
Gianola, D.
1975-01-01
The effects of ancestral irradiation of rat spermatogonia (a cumulative total of 4050 r of x-rays) were studied in a highly inbred line of rats to explore the feasibility of using irradiation to enhance the effectiveness of selection. Six generations after irradiation was terminated, a selection experiment for body weight at six weeks of age was started in both ancestrally irradiated and non-irradiated populations. There were two non-contemporaneous replicates in each of the populations. Within each of the ancestral treatment-replicate combinations one line was selected for high, one for low body weight at six weeks of age, and a third line was maintained by random selection. In each line, avoidance of mating of animals with grandparents in common was attempted. Data on the first ten progeny generations of selection were included in this study. Five types of covariances among relatives were used to estimate causal components of variance for five different genetic models within the ''non-irradiated'' and ''irradiated'' randomly selected models. The parameters in the genetic models were estimated by generalized least-squares. This analysis suggested that a genetic model including direct genetic and maternal genetic effects was adequate to describe the body weights at 3, 6 and 10 weeks of age and the weight gains between these ages. Ancestral irradiation seemed to have enhanced the maternal genetic variance and the covariance between the direct genetic and the maternal genetic effects. On the basis of the above analysis, it was deduced that mass selection should have been more effective in the descendants of irradiated males than in those of the non-irradiated males as a consequence of greater phenotypic variability in their progeny and an enhancement in the regression of the genetic value on the selection criterion
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Ancestral effect on HOMA-IR levels quantitated in an American population of Mexican origin.
Qu, Hui-Qi; Li, Quan; Lu, Yang; Hanis, Craig L; Fisher-Hoch, Susan P; McCormick, Joseph B
2012-12-01
An elevated insulin resistance index (homeostasis model assessment of insulin resistance [HOMA-IR]) is more commonly seen in the Mexican American population than in European populations. We report quantitative ancestral effects within a Mexican American population, and we correlate ancestral components with HOMA-IR. We performed ancestral analysis in 1,551 participants of the Cameron County Hispanic Cohort by genotyping 103 ancestry-informative markers (AIMs). These AIMs allow determination of the percentage (0-100%) ancestry from three major continental populations, i.e., European, African, and Amerindian. We observed that predominantly Amerindian ancestral components were associated with increased HOMA-IR (β = 0.124, P = 1.64 × 10(-7)). The correlation was more significant in males (Amerindian β = 0.165, P = 5.08 × 10(-7)) than in females (Amerindian β = 0.079, P = 0.019). This unique study design demonstrates how genomic markers for quantitative ancestral information can be used in admixed populations to predict phenotypic traits such as insulin resistance.
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The structured ancestral selection graph and the many-demes limit.
Slade, Paul F; Wakeley, John
2005-02-01
We show that the unstructured ancestral selection graph applies to part of the history of a sample from a population structured by restricted migration among subpopulations, or demes. The result holds in the limit as the number of demes tends to infinity with proportionately weak selection, and we have also made the assumptions of island-type migration and that demes are equivalent in size. After an instantaneous sample-size adjustment, this structured ancestral selection graph converges to an unstructured ancestral selection graph with a mutation parameter that depends inversely on the migration rate. In contrast, the selection parameter for the population is independent of the migration rate and is identical to the selection parameter in an unstructured population. We show analytically that estimators of the migration rate, based on pairwise sequence differences, derived under the assumption of neutrality should perform equally well in the presence of weak selection. We also modify an algorithm for simulating genealogies conditional on the frequencies of two selected alleles in a sample. This permits efficient simulation of stronger selection than was previously possible. Using this new algorithm, we simulate gene genealogies under the many-demes ancestral selection graph and identify some situations in which migration has a strong effect on the time to the most recent common ancestor of the sample. We find that a similar effect also increases the sensitivity of the genealogy to selection.
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Reconstruction of Ancestral Genomes in Presence of Gene Gain and Loss.
Avdeyev, Pavel; Jiang, Shuai; Aganezov, Sergey; Hu, Fei; Alekseyev, Max A
2016-03-01
Since most dramatic genomic changes are caused by genome rearrangements as well as gene duplications and gain/loss events, it becomes crucial to understand their mechanisms and reconstruct ancestral genomes of the given genomes. This problem was shown to be NP-complete even in the "simplest" case of three genomes, thus calling for heuristic rather than exact algorithmic solutions. At the same time, a larger number of input genomes may actually simplify the problem in practice as it was earlier illustrated with MGRA, a state-of-the-art software tool for reconstruction of ancestral genomes of multiple genomes. One of the key obstacles for MGRA and other similar tools is presence of breakpoint reuses when the same breakpoint region is broken by several different genome rearrangements in the course of evolution. Furthermore, such tools are often limited to genomes composed of the same genes with each gene present in a single copy in every genome. This limitation makes these tools inapplicable for many biological datasets and degrades the resolution of ancestral reconstructions in diverse datasets. We address these deficiencies by extending the MGRA algorithm to genomes with unequal gene contents. The developed next-generation tool MGRA2 can handle gene gain/loss events and shares the ability of MGRA to reconstruct ancestral genomes uniquely in the case of limited breakpoint reuse. Furthermore, MGRA2 employs a number of novel heuristics to cope with higher breakpoint reuse and process datasets inaccessible for MGRA. In practical experiments, MGRA2 shows superior performance for simulated and real genomes as compared to other ancestral genome reconstruction tools.
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Criteria impacting shipments of Rocky Flats Plant radioactive mixed wastes
International Nuclear Information System (INIS)
Clawson, R.L.; Eide, J.H.
1992-05-01
Westinghouse Hanford Company, Transportation and Packaging Division, under contract for the Los Alamos Technology Office-Rocky Flats Plant, has developed this synopsis report to be used as a reference in the development of the Rocky Flats Plant Comprehensive Treatment and Management Plan and the Rocky Flats Plant Residue Elimination Plan. This report represents the criteria for packaging, shipping, and transporting Rocky Flats Plant radioactive mixed wastes. It is a compilation of state and federal regulations, US Department of Energy orders, and acceptance criteria specific to US Department of Energy radioactive mixed waste treatment, storage and disposal facilities
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Public involvement in cleanup - the Rocky Flats experience
International Nuclear Information System (INIS)
Paukert, J.; Pennock, S.; Schassburger, R.
1992-01-01
The U.S. Department of Energy's Rocky Flats Plant recently completed and implemented the Rocky Flats Plant Community Relations Plan for public involvement in environmental restoration of the site. The plan was developed in cooperation with the plant's regulators, the U.S. Environmental Protection Agency and the Colorado Department of Health. In addition, citizens near the plant played a significant role in shaping the document through extensive community interviews and public comment. The result of these cooperative efforts is a plan that meets and exceeds the applicable federal and state community relations requirements for a cleanup program. In fact, the U.S. Environmental Protection Agency has used the Rocky Flats Plant Community Relations Plants a model for similar plans at other federal facilities. Plan development, however, is only the starting point for an effective community relations effort. The Rocky Flats Plant and the public will face many challenges together as we implement the plan and build a partnership for addressing environmental cleanup issues. (author)
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Rocky desertification in Southwest China: Impacts, causes, and restoration
Jiang, Zhongcheng; Lian, Yanqing; Qin, Xiaoqun
2014-05-01
Rocky desertification, which is relatively less well known than desertification, refers to the processes and human activities that transform a karst area covered by vegetation and soil into a rocky landscape. It has occurred in various countries and regions, including the European Mediterranean and Dinaric Karst regions of the Balkan Peninsula, Southwest China on a large scale, and alarmingly, even in tropical rainforests such as Haiti and Barbados, and has had tremendous negative impacts to the environment and social and economic conditions at local and regional scales. The goal of this paper is to provide a thorough review of the impacts, causes, and restoration measures of rocky desertification based on decades of studies in the southwest karst area of China and reviews of studies in Europe and other parts of the world. The low soil formation rate and high permeability of carbonate rocks create a fragile and vulnerable environment that is susceptible to deforestation and soil erosion. Other natural processes related to hydrology and ecology could exacerbate rocky desertification. However, disturbances from a wide variety of human activities are ultimately responsible for rocky desertification wherever it has occurred. This review shows that reforestation can be successful in Southwest China and even in the Dinaric Karst region when the land, people, water, and other resources are managed cohesively. However, new challenges may arise as more frequent droughts and extreme floods induced by global climate change and variability may slow the recovery process or even expand rocky desertification. This review is intended to bring attention to this challenging issue and provide information needed to advance research and engineering practices to combat rocky desertification and to aid in sustainable development.
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Krishnan, Neeraja M; Seligmann, Hervé; Stewart, Caro-Beth; De Koning, A P Jason; Pollock, David D
2004-10-01
Reconstruction of ancestral DNA and amino acid sequences is an important means of inferring information about past evolutionary events. Such reconstructions suggest changes in molecular function and evolutionary processes over the course of evolution and are used to infer adaptation and convergence. Maximum likelihood (ML) is generally thought to provide relatively accurate reconstructed sequences compared to parsimony, but both methods lead to the inference of multiple directional changes in nucleotide frequencies in primate mitochondrial DNA (mtDNA). To better understand this surprising result, as well as to better understand how parsimony and ML differ, we constructed a series of computationally simple "conditional pathway" methods that differed in the number of substitutions allowed per site along each branch, and we also evaluated the entire Bayesian posterior frequency distribution of reconstructed ancestral states. We analyzed primate mitochondrial cytochrome b (Cyt-b) and cytochrome oxidase subunit I (COI) genes and found that ML reconstructs ancestral frequencies that are often more different from tip sequences than are parsimony reconstructions. In contrast, frequency reconstructions based on the posterior ensemble more closely resemble extant nucleotide frequencies. Simulations indicate that these differences in ancestral sequence inference are probably due to deterministic bias caused by high uncertainty in the optimization-based ancestral reconstruction methods (parsimony, ML, Bayesian maximum a posteriori). In contrast, ancestral nucleotide frequencies based on an average of the Bayesian set of credible ancestral sequences are much less biased. The methods involving simpler conditional pathway calculations have slightly reduced likelihood values compared to full likelihood calculations, but they can provide fairly unbiased nucleotide reconstructions and may be useful in more complex phylogenetic analyses than considered here due to their speed and
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The rocky flats controversy on radionuclide soil action levels
International Nuclear Information System (INIS)
Earle, T.C.
2004-01-01
This report describes how stakeholder involvement processes led to the successful resolution of a dispute over radionuclide soil action levels at the Rocky Flats Site near Denver, Colorado. During the Cold War Era, Rocky Flats, a plutonium fabrication plant, was part of the American government's multi-site nuclear weapons production facilities. Although the Rocky Flats plant had significant positive effects on the local economy, it became a target of public protest due to concerns over both public safety in the area surrounding the site and global nuclear proliferation. In the late 1980's, local safety concerns led to investigations by state and federal agencies. In 1992, with the Cold War ended, the Department of Energy decided to decommission the Rocky Flats site and to begin the long process of decontamination. (author)
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Prenatal effects of ancestral irradiation in inbred mice
International Nuclear Information System (INIS)
Sprackling, L.E.S.
1975-01-01
Mice from 13 inbred strains (S, Z, E, Bab, BaB, BrR, C, K, N, Q, G, CFW, CF1) received continuous cobalt 60 irradiation at low dose rates for varying numbers of consecutive generations. Some Bab and BaB mice had received continuous irradiation for from 24 to 31 generations and the other mice had up to six generations of continuous irradiation in their ancestry. At weaning, the mice were removed from the irradiation room and were mated within strains either to sibs or nonsibs. Ancestral and direct irradiation doses were calculated. The ancestral dose was the effective accumulated dose to the progeny of the mated mice. The direct dose was the amount of irradiation received by any mated female from her conception to her weaning. Each irradiated or control female was scored as fertile or sterile and in utero litter counts were made in pregnant females that were dissected past the tenth day of pregnancy; the sum of moles, dead embryos, and live embryos was the total in utero litter size. A ratio of the living embryos to the total number of embryos in utero was determined for each litter. An increase in ancestral or direct irradiation dose significantly decreased fertility in 11 of the 13 strains. The fertility curves for the pooled data were sigmoid in the area of the doses below those that caused complete sterility. Among the controls, there were significant strain differences in total litter size and in the ratio. Strain X--Y plots, with ancestral or direct doses plotted against total litter size or ratio, revealed the tendency for litter size to decrease as dose increased. The only trend shown for ratio was for the litters with ratios of 0.50 or less to appear more frequently among the irradiated mice. The few corpora lutea counts revealed nothing of significance. Generally, there was a definite trend toward fewer mice alive in utero among the irradiated mice
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Rocky Mountain Research Station: 2012-2013 Annual Report
Cass Cairns
2013-01-01
The Rocky Mountain Research Station is one of seven regional units that make up the USDA Forest Service Research and Development organization - the most extensive natural resources research organization in the world. We maintain 12 field laboratories throughout a 12-state territory encompassing the Great Basin, Southwest, Rocky Mountains, and parts of the...
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The ancestral selection graph under strong directional selection.
Pokalyuk, Cornelia; Pfaffelhuber, Peter
2013-08-01
The ancestral selection graph (ASG) was introduced by Neuhauser and Krone (1997) in order to study populations of constant size which evolve under selection. Coalescence events, which occur at rate 1 for every pair of lines, lead to joint ancestry. In addition, splitting events in the ASG at rate α, the scaled selection coefficient, produce possible ancestors, such that the real ancestor depends on the ancestral alleles. Here, we use the ASG in the case without mutation in order to study fixation of a beneficial mutant. Using our main tool, a reversibility property of the ASG, we provide a new proof of the fact that a beneficial allele fixes roughly in time (2logα)/α if α is large. Copyright © 2012 Elsevier Inc. All rights reserved.
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Study on comprehensive planning of rocky desertification in karst area of Chongqing
Zang, Yajun
2017-11-01
Chongqing is a key area for comprehensive treatment of rocky desertification in karst areas of china. Strengthening the comprehensive management of karst rocky desertification area, for the maintenance of ecological safety of Three Gorges Reservoir area, expanding the karst rocky desertification area people survival and development space, and improving the regional ecological conditions, have important practical significance to the construction of ecological civilization and building a harmonious society. Based on the investigation, analysis and arrangement of the data in the rocky desertification area, the paper puts forward the corresponding measures and phased targets for the treatment of the Rocky Desertification in the karst areas of Chongqing.
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Rocky Flats Cleanup Agreement implementation successes and challenges
International Nuclear Information System (INIS)
Shelton, D.C.
1997-01-01
On July 19, 1996 the US Department of Energy (DOE), State of Colorado (CDPHE), and US Environmental Protection Agency (EPA) entered into an agreement called the Rocky Flats Cleanup Agreement (RFCA) for the cleanup and closure of the Rocky Flats Environmental Technology Site (RFETS or Rocky Flats). Major elements of the agreement include: an Integrated Site-Wide Baseline; up to twelve significant enforceable milestones per year; agreed upon soil and water action levels and standards for cleanup; open space as the likely foreseeable land use; the plutonium and TRU waste removed by 2015; streamlined regulatory process; agreement with the Defense Nuclear Facilities Safety Board (DNFSB) to coordinate activities; and a risk reduction focus. Successful implementation of RFCA requires a substantial effort by the parties to change their way of thinking about RFETS and meet the deliverables and commitments. Substantial progress toward Site closure through the implementation of RFCA has been accomplished in the short time since the signing, yet much remains to be done. Much can be learned from the Rocky Flats experience by other facilities in similar situations
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ROCKY PLANETESIMAL FORMATION VIA FLUFFY AGGREGATES OF NANOGRAINS
Energy Technology Data Exchange (ETDEWEB)
Arakawa, Sota; Nakamoto, Taishi, E-mail: arakawa.s.ac@m.titech.ac.jp [Department of Earth and Planetary Sciences, Tokyo Institute of Technology, Meguro, Tokyo 152-8551 (Japan)
2016-12-01
Several pieces of evidence suggest that silicate grains in primitive meteorites are not interstellar grains but condensates formed in the early solar system. Moreover, the size distribution of matrix grains in chondrites implies that these condensates might be formed as nanometer-sized grains. Therefore, we propose a novel scenario for rocky planetesimal formation in which nanometer-sized silicate grains are produced by evaporation and recondensation events in early solar nebula, and rocky planetesimals are formed via aggregation of these nanograins. We reveal that silicate nanograins can grow into rocky planetesimals via direct aggregation without catastrophic fragmentation and serious radial drift, and our results provide a suitable condition for protoplanet formation in our solar system.
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The challenge and future of rocky desertification control in karst areas in southwest China
Zhang, J. Y.; Dai, M. H.; Wang, L. C.; Zeng, C. F.; Su, W. C.
2016-01-01
Karst rocky desertification occurs after vegetation deteriorates as a result of intensive land use, which leads to severe water loss and soil erosion and exposes basement rocks, creating a rocky landscape. Karst rocky desertification is found in humid areas in southwest China, the region most seriously affected by rocky desertification in the world. In order to promote ecological restoration and help peasants out of poverty, the Chinese government carried out the first phase of a rocky desertification control project from 2006 to 2015, which initially contained the expansion of rocky desertification. Currently, the Chinese government is prepared to implement the second phase of the rocky desertification control project, and therefore it is essential to summarise the lessons learned over the last 10 years of the first phase. In this paper, we analyse the driving social and economic factors behind rocky desertification, summarise the scientific research on rocky desertification in the region, and finally identify the main problems facing rocky desertification control. In addition, we put forward several policy suggestions that take into account the perspective of local peasants, scientific research, and China's economic development and urbanisation process. These suggestions include promoting the non-agriculturalization of household livelihoods, improving ecological compensation, strengthening the evaluation of rocky desertification control and dynamic monitoring, and strengthening research on key ecological function recovery technologies and supporting technologies.
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A comparison of ancestral state reconstruction methods for quantitative characters.
Royer-Carenzi, Manuela; Didier, Gilles
2016-09-07
Choosing an ancestral state reconstruction method among the alternatives available for quantitative characters may be puzzling. We present here a comparison of seven of them, namely the maximum likelihood, restricted maximum likelihood, generalized least squares under Brownian, Brownian-with-trend and Ornstein-Uhlenbeck models, phylogenetic independent contrasts and squared parsimony methods. A review of the relations between these methods shows that the maximum likelihood, the restricted maximum likelihood and the generalized least squares under Brownian model infer the same ancestral states and can only be distinguished by the distributions accounting for the reconstruction uncertainty which they provide. The respective accuracy of the methods is assessed over character evolution simulated under a Brownian motion with (and without) directional or stabilizing selection. We give the general form of ancestral state distributions conditioned on leaf states under the simulation models. Ancestral distributions are used first, to give a theoretical lower bound of the expected reconstruction error, and second, to develop an original evaluation scheme which is more efficient than comparing the reconstructed and the simulated states. Our simulations show that: (i) the distributions of the reconstruction uncertainty provided by the methods generally make sense (some more than others); (ii) it is essential to detect the presence of an evolutionary trend and to choose a reconstruction method accordingly; (iii) all the methods show good performances on characters under stabilizing selection; (iv) without trend or stabilizing selection, the maximum likelihood method is generally the most accurate. Copyright © 2016 Elsevier Ltd. All rights reserved.
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Infant and juvenile growth in ancestral Pueblo Indians.
Schillaci, Michael A; Nikitovic, Dejana; Akins, Nancy J; Tripp, Lianne; Palkovich, Ann M
2011-06-01
The present study examines patterns of infant and juvenile growth in a diachronic sample of ancestral Pueblo Indians (AD 1300-1680) from the American Southwest. An assessment of growth patterns is accompanied by an evaluation of pathological conditions often considered to be indicators of nutritional deficiencies and/or gastrointestinal infections. Growth patterns and the distribution of pathological conditions are interpreted relative to culturally relevant age categories defined by Puebloan rites of passage described in the ethnographic literature. A visual comparison of growth distance curves revealed that relative to a modern comparative group our sample of ancestral Pueblo infant and juveniles exhibited faltering growth beginning soon after birth to about 5 years of age. A comparison of curves describing growth relative to adult femoral length, however, indicated reduced growth occurring later, by around 2 years of age. Similar to previous studies, we observed a high proportion of nonsurvivors exhibiting porotic cranial lesions during the first 2 years of life. Contrary to expectations, infants and juveniles without evidence of porotic cranial lesions exhibited a higher degree of stunting. Our study is generally consistent with previous research reporting poor health and high mortality for ancestral Pueblo Indian infants and juveniles. Through use of a culturally relevant context defining childhood, we argue that the observed poor health and high mortality in our sample occur before the important transition from young to older child and the concomitant initial incorporation into tribal ritual organization. Copyright © 2011 Wiley-Liss, Inc.
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Choosing the best ancestral character state reconstruction method.
Royer-Carenzi, Manuela; Pontarotti, Pierre; Didier, Gilles
2013-03-01
Despite its intrinsic difficulty, ancestral character state reconstruction is an essential tool for testing evolutionary hypothesis. Two major classes of approaches to this question can be distinguished: parsimony- or likelihood-based approaches. We focus here on the second class of methods, more specifically on approaches based on continuous-time Markov modeling of character evolution. Among them, we consider the most-likely-ancestor reconstruction, the posterior-probability reconstruction, the likelihood-ratio method, and the Bayesian approach. We discuss and compare the above-mentioned methods over several phylogenetic trees, adding the maximum-parsimony method performance in the comparison. Under the assumption that the character evolves according a continuous-time Markov process, we compute and compare the expectations of success of each method for a broad range of model parameter values. Moreover, we show how the knowledge of the evolution model parameters allows to compute upper bounds of reconstruction performances, which are provided as references. The results of all these reconstruction methods are quite close one to another, and the expectations of success are not so far from their theoretical upper bounds. But the performance ranking heavily depends on the topology of the studied tree, on the ancestral node that is to be inferred and on the parameter values. Consequently, we propose a protocol providing for each parameter value the best method in terms of expectation of success, with regard to the phylogenetic tree and the ancestral node to infer. Copyright © 2012 Elsevier Inc. All rights reserved.
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Assessment of lake sensitivity to acidic deposition in national parks of the Rocky Mountains
Nanus, L.; Williams, M.W.; Campbell, D.H.; Tonnessen, K.A.; Blett, T.; Clow, D.W.
2009-01-01
The sensitivity of high-elevation lakes to acidic deposition was evaluated in five national parks of the Rocky Mountains based on statistical relations between lake acid-neutralizing capacity concentrations and basin characteristics. Acid-neutralizing capacity (ANC) of 151 lakes sampled during synoptic surveys and basin-characteristic information derived from geographic information system (GIS) data sets were used to calibrate the statistical models. The explanatory basin variables that were considered included topographic parameters, bedrock type, and vegetation type. A logistic regression model was developed, and modeling results were cross-validated through lake sampling during fall 2004 at 58 lakes. The model was applied to lake basins greater than 1 ha in area in Glacier National Park (n = 244 lakes), Grand Teton National Park (n = 106 lakes), Great Sand Dunes National Park and Preserve (n = 11 lakes), Rocky Mountain National Park (n = 114 lakes), and Yellowstone National Park (n = 294 lakes). Lakes that had a high probability of having an ANC concentration 3000 m, with 80% of the catchment bedrock having low buffering capacity. The modeling results indicate that the most sensitive lakes are located in Rocky Mountain National Park and Grand Teton National Park. This technique for evaluating the lake sensitivity to acidic deposition is useful for designing long-term monitoring plans and is potentially transferable to other remote mountain areas of the United States and the world.
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Rocky Mountain Riparian Digest
Deborah M. Finch
2008-01-01
The Rocky Mountain Riparian Digest presents the many facets of riparian research at the station. Included are articles about protecting the riparian habitat, the social and economic values of riparian environments, watershed restoration, remote sensing tools, and getting kids interested in the science.
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A case of Rocky Mountain spotted fever.
Rubel, Barry S
2007-01-01
Rocky Mountain spotted fever is a serious, generalized infection that is spread to humans through the bite of infected ticks. It can be lethal but it is curable. The disease gets its name from the Rocky Mountain region where it was first identified in 1896. The fever is caused by the bacterium Rickettsia rickettsii and is maintained in nature in a complex life cycle involving ticks and mammals. Humans are considered to be accidental hosts and are not involved in the natural transmission cycle of this pathogen. The author examined a 47-year-old woman during a periodic recall appointment. The patient had no dental problems other than the need for routine prophylaxis but mentioned a recent problem with swelling of her extremities with an accompanying rash and general malaise and soreness in her neck region. Tests were conducted and a diagnosis of Rocky Mountain spotted fever was made.
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Managing Rocky Mountain spotted fever.
Minniear, Timothy D; Buckingham, Steven C
2009-11-01
Rocky Mountain spotted fever is caused by the tick-borne bacterium Rickettsia rickettsii. Symptoms range from moderate illness to severe illness, including cardiovascular compromise, coma and death. The disease is prevalent in most of the USA, especially during warmer months. The trademark presentation is fever and rash with a history of tick bite, although tick exposure is unappreciated in over a third of cases. Other signature symptoms include headache and abdominal pain. The antibiotic therapy of choice for R. rickettsii infection is doxycycline. Preventive measures for Rocky Mountain spotted fever and other tick-borne diseases include: wearing long-sleeved, light colored clothing; checking for tick attachment and removing attached ticks promptly; applying topical insect repellent; and treating clothing with permethrin.
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Wehi, Priscilla M
2009-01-01
Traditional ecological knowledge (TEK) is central to indigenous worldviews and practices and is one of the most important contributions that indigenous people can bring to conservation management partnerships. However, researchers and managers may have difficulty accessing such knowledge, particularly where knowledge transmission has been damaged. A new methodological approach analyzes ancestral sayings from Maori oral traditions for ecological information about Phormium tenax, a plant with high cultural value that is a dominant component in many threatened wetland systems, and frequently used in restoration plantings in New Zealand. Maori ancestral sayings record an association with nectar-feeding native parrots that has only rarely been reported, as well as indications of important environmental parameters (rainfall and drought) for this species. These sayings provide evidence of indigenous management that has not been reported from interviews with elders, including evidence of fire use to create Phormium cultivations. TEK in Maori ancestral sayings imply landscape-scale processes in comparison to intensive, small-scale management methods often reported in interviews. TEK in ancestral sayings can be used to generate new scientific hypotheses, negotiate collaborative pathways, and identify ecological management strategies that support biodiversity retention. TEK can inform restoration ecology, historical ecology, and conservation management of species and ecosystems, especially where data from pollen records and archaeological artifacts are incomplete.
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Koblmüller, Stephan; Salzburger, Walter; Sturmbauer, Christian
2004-01-01
The cichlid species flock of Lake Tanganyika is comprised of seven seeding lineages that evolved in step with changes of the lake environment. One seeding lineage diversified into at least six lineages within a short period of time. Our study focuses on the diversification of one of these lineages, the Ectodini, comprising highly specialized, sand- and rock-dwelling species. They display two distinct breeding styles: maternal and biparental mouthbrooding. By analyzing three mtDNA gene segments in 30 species representing all 13 described genera, we show that the Ectodini rapidly diversified into four clades at the onset of their radiation. The monotypic genus Grammatotria is likely to represent the most ancestral split, followed by the almost contemporary origin of three additional clades, the first comprising the benthic genus Callochromis, the second comprising the benthic genera Asprotilapia, Xenotilapia, Enantiopus, and Microdontochromis, and the third comprising the semi-pelagic genera Ophthalmotilapia, Cardiopharynx, Cyathopharynx, Ectodus, Aulonocranus, Lestradea, and Cunningtonia. Our study confirms the benthic and sand-dwelling life-style as ancestral. Rocky habitats were colonized independently in the Xenotilapia- and Ophthalmotilapia-clade. The Xenotilapia-clade comprises both maternal and biparental mouthbrooders. Their mode of breeding appears to be highly plastic: biparental mouthbrooding either evolved once in the common ancestor of the clade, to be reverted at least three times, or evolved at least five times independently from a maternally mouthbrooding ancestor. Furthermore, the genera Xenotilapia, Microdontochromis, Lestradea, and Ophthalmotilapia appeared paraphyletic in our analyses, suggesting the need of taxonomic revision.
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Modeling X-linked ancestral origins in multiparental populations
Zheng, Chaozhi
2015-01-01
The models for the mosaic structure of an individual's genome from multiparental populations have been developed primarily for autosomes, whereas X chromosomes receive very little attention. In this paper, we extend our previous approach to model ancestral origin processes along two X chromosomes
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On the Accuracy of Ancestral Sequence Reconstruction for Ultrametric Trees with Parsimony.
Herbst, Lina; Fischer, Mareike
2018-04-01
We examine a mathematical question concerning the reconstruction accuracy of the Fitch algorithm for reconstructing the ancestral sequence of the most recent common ancestor given a phylogenetic tree and sequence data for all taxa under consideration. In particular, for the symmetric four-state substitution model which is also known as Jukes-Cantor model, we answer affirmatively a conjecture of Li, Steel and Zhang which states that for any ultrametric phylogenetic tree and a symmetric model, the Fitch parsimony method using all terminal taxa is more accurate, or at least as accurate, for ancestral state reconstruction than using any particular terminal taxon or any particular pair of taxa. This conjecture had so far only been answered for two-state data by Fischer and Thatte. Here, we focus on answering the biologically more relevant case with four states, which corresponds to ancestral sequence reconstruction from DNA or RNA data.
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The rocky flats controversy on radionuclide soil action levels
International Nuclear Information System (INIS)
Earle, T.C.
2004-01-01
This report describes the Rocky Flats radionuclide soil action level controversy as a case study for the purpose of understanding the nature and value of stakeholder involvement in the management of radiological hazards. The report consists of three main sections. The first section outlines the Rocky Flats story, including the Cold War era, the post-Cold War era, and the transition between the two. This provides the context necessary to understand the radionuclide soil action level controversy, the main events of which are described in the second section. In the final section, the Rocky Flats case is briefly discussed within the framework of a general model of stakeholder involvement and the lessons learned from the case are identified. (author)
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Wright, April M; Lyons, Kathleen M; Brandley, Matthew C; Hillis, David M
2015-09-01
Changes in parity mode between egg-laying (oviparity) and live-bearing (viviparity) have occurred repeatedly throughout vertebrate evolution. Oviparity is the ancestral amniote state, and viviparity has evolved many times independently within amniotes (especially in lizards and snakes), with possibly a few reversions to oviparity. In amniotes, the shelled egg is considered a complex structure that is unlikely to re-evolve if lost (i.e., it is an example of Dollo's Principle). However, a recent ancestral state reconstruction analysis concluded that viviparity was the ancestral state of squamate reptiles (lizards and snakes), and that oviparity re-evolved from viviparity many times throughout the evolutionary history of squamates. Here, we re-evaluate support for this provocative conclusion by testing the sensitivity of the analysis to model assumptions and estimates of squamate phylogeny. We found that the models and methods used for parity mode reconstruction are highly sensitive to the specific estimate of phylogeny used, and that the point estimate of phylogeny used to suggest that viviparity is the root state of the squamate tree is far from an optimal phylogenetic solution. The ancestral state reconstructions are also highly sensitive to model choice and specific values of model parameters. A method that is designed to account for biases in taxon sampling actually accentuates, rather than lessens, those biases with respect to ancestral state reconstructions. In contrast to recent conclusions from the same data set, we find that ancestral state reconstruction analyses provide highly equivocal support for the number and direction of transitions between oviparity and viviparity in squamates. Moreover, the reconstructions of ancestral parity state are highly dependent on the assumptions of each model. We conclude that the common ancestor of squamates was oviparous, and subsequent evolutionary transitions to viviparity were common, but reversals to oviparity were
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Energy Technology Data Exchange (ETDEWEB)
Robertson, Janeen Denise [Univ. of New Mexico, Albuquerque, NM (United States)
1999-02-01
In a mortality study of white males who had worked at the Rocky Flats Nuclear Weapons Plant between 1952 and 1979, an increased number of deaths from benign and unspecified intracranial neoplasms was found. A case-control study nested within this cohort investigated the hypothesis that an association existed between brain tumor death and exposure to either internally deposited plutonium or external ionizing radiation. There was no statistically significant association found between estimated radiation exposure from internally deposited plutonium and the development of brain tumors. Exposure by job or work area showed no significant difference between the cohort and the control groups. An update of the study found elevated risk estimates for (1) all lymphopoietic neoplasms, and (2) all causes of death in employees with body burdens greater than or equal to two nanocuries of plutonium. There was an excess of brain tumors for the entire cohort. Similar cohort studies conducted on worker populations from other plutonium handling facilities have not yet shown any elevated risks for brain tumors. Historically, the Rocky Flats Nuclear Weapons Plant used large quantities of chemicals in their production operations. The use of solvents, particularly carbon tetrachloride, was unique to Rocky Flats. No investigation of the possible confounding effects of chemical exposures was done in the initial studies. The objectives of the present study are to (1) investigate the history of chemical use at the Rocky Flats facility; (2) locate and analyze chemical monitoring information in order to assess employee exposure to the chemicals that were used in the highest volume; and (3) determine the feasibility of establishing a chemical exposure assessment model that could be used in future epidemiology studies.
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McCreary, J Keiko; Erickson, Zachary T; Metz, Gerlinde A S
2016-10-06
An adverse fetal environment in utero has been associated with long-term alterations in brain structure and function, and a higher risk of neurological disorders in later life. A common consequence of early adverse experience is impaired motor system function. A causal relationship for stress-associated impairments and a suitable therapy, however, have not been determined yet. To investigate the impact of ancestral stress on corticospinal tract (CST) morphology and fine motor performance in rats, and to determine if adverse programming by ancestral stress can be mitigated by environmental enrichment therapy in rats. The study examined F3 offspring generated by three lineages; one with prenatal stress only in the F1 generation, one with compounding effects of multigenerational prenatal stress, and a non-stress control lineage. F3 offspring from each lineage were injected with biotinylated dextran amine (BDA) into the motor cortex for anterograde tracing of the CST. Examination of the CST revealed reduced axonal density in the ancestrally stressed lineages. These anatomical changes were associated with significant impairments in skilled walking, as indicated by reduced foot placement accuracy and disturbed inter-limb coordination. Therapeutic intervention by environmental enrichment reduced the neuromorphological consequences of ancestral stress and restored skilled walking ability. The data suggest a causal relationship between stress-induced abnormal CST function and loss of fine motor performance. Thus, ancestral stress may be a determinant of motor system development and motor skill. Environmental enrichment may represent an effective intervention for the adverse programming by ancestral stress and trauma. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.
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Rocky Mountain spotted fever from an unexpected tick vector in Arizona.
Demma, Linda J; Traeger, Marc S; Nicholson, William L; Paddock, Christopher D; Blau, Dianna M; Eremeeva, Marina E; Dasch, Gregory A; Levin, Michael L; Singleton, Joseph; Zaki, Sherif R; Cheek, James E; Swerdlow, David L; McQuiston, Jennifer H
2005-08-11
Rocky Mountain spotted fever is a life-threatening, tick-borne disease caused by Rickettsia rickettsii. This disease is rarely reported in Arizona, and the principal vectors, Dermacentor species ticks, are uncommon in the state. From 2002 through 2004, a focus of Rocky Mountain spotted fever was investigated in rural eastern Arizona. We obtained blood and tissue specimens from patients with suspected Rocky Mountain spotted fever and ticks from patients' homesites. Serologic, molecular, immunohistochemical, and culture assays were performed to identify the causative agent. On the basis of specific laboratory criteria, patients were classified as having confirmed or probable Rocky Mountain spotted fever infection. A total of 16 patients with Rocky Mountain spotted fever infection (11 with confirmed and 5 with probable infection) were identified. Of these patients, 13 (81 percent) were children 12 years of age or younger, 15 (94 percent) were hospitalized, and 2 (12 percent) died. Dense populations of Rhipicephalus sanguineus ticks were found on dogs and in the yards of patients' homesites. All patients with confirmed Rocky Mountain spotted fever had contact with tick-infested dogs, and four had a reported history of tick bite preceding the illness. R. rickettsii DNA was detected in nonengorged R. sanguineus ticks collected at one home, and R. rickettsii isolates were cultured from these ticks. This investigation documents the presence of Rocky Mountain spotted fever in eastern Arizona, with common brown dog ticks (R. sanguineus) implicated as a vector of R. rickettsii. The broad distribution of this common tick raises concern about its potential to transmit R. rickettsii in other settings. Copyright 2005 Massachusetts Medical Society.
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Ongoing Cerebral Vasculitis During Treatment of Rocky Mountain Spotted Fever.
Sun, Lisa R; Huisman, Thierry A G M; Yeshokumar, Anusha K; Johnston, Michael V
2015-11-01
Rocky Mountain spotted fever is a tickborne infection that produces a systemic small-vessel vasculitis; its prognosis is excellent if appropriate treatment is initiated early. Because the advent of effective antirickettsial therapies predates the widespread use of brain magnetic resonance imaging, there are limited data on the effect of untreated Rocky Mountain spotted fever infection on neuroimaging studies. We describe a 7-year-old girl with delayed treatment of Rocky Mountain spotted fever who suffered severe neurological impairment. Serial brain magnetic resonance images revealed a progressive "starry sky appearance," which is proposed to result from the same small vessel vasculitis that causes the characteristic skin rash of this infection. Neurological injury can continue to occur despite specific antirickettsial therapy in Rocky Mountain spotted fever. This child's clinical features raise questions about the optimal management of this infection, particularly the utility of immune modulating therapies in cases of delayed treatment and neurological involvement. Copyright © 2015 Elsevier Inc. All rights reserved.
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Leonard, E. M.; Laabs, B. J. C.; Plummer, M. A.
2014-12-01
Numerical modeling of paleoglaciers can yield information on the climatic conditions necessary to sustain those glaciers. In this study we apply a coupled 2-d mass/energy balance and flow model (Plummer and Phillips, 2003) to reconstruct local last glacial maximum (LLGM) glaciers and paleoclimate in ten study areas along the crest of the U.S. Rocky Mountains between 33°N and 49°N. In some of the areas, where timing of post-LLGM ice recession is constrained by surface exposure ages on either polished bedrock upvalley from the LLGM moraines or post-LLGM recessional moraines, we use the model to assess magnitudes and rates of climate change during deglaciation. The modeling reveals a complex pattern of LLGM climate. The magnitude of LLGM-to-modern climate change (temperature and/or precipitation change) was greater in both the northern (Montana) Rocky Mountains and southern (New Mexico) Rocky Mountains than in the middle (Wyoming and Colorado) Rocky Mountains. We use temperature depression estimates from global and regional climate models to infer LLGM precipitation from our glacier model results. Our results suggest a reduction of precipitation coupled with strongly depressed temperatures in the north, contrasted with strongly enhanced precipitation and much more modest temperature depression in the south. The middle Rocky Mountains of Colorado and Wyoming appear to have experienced a reduction in precipitation at the LLGM without the strong temperature depression of the northern Rocky Mountains. Preliminary work on modeling of deglaciation in the Sangre de Cristo Range in southern Colorado suggests that approximately half of the LLGM-to-modern climate change took place during the initial ~2400 years of deglaciation. If increasing temperature and changing solar insolation were the sole drivers of this initial deglaciation, then temperature would need to have risen by slightly more than 1°C/ky through this interval to account for the observed rate of ice recession.
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Historian: accurate reconstruction of ancestral sequences and evolutionary rates.
Holmes, Ian H
2017-04-15
Reconstruction of ancestral sequence histories, and estimation of parameters like indel rates, are improved by using explicit evolutionary models and summing over uncertain alignments. The previous best tool for this purpose (according to simulation benchmarks) was ProtPal, but this tool was too slow for practical use. Historian combines an efficient reimplementation of the ProtPal algorithm with performance-improving heuristics from other alignment tools. Simulation results on fidelity of rate estimation via ancestral reconstruction, along with evaluations on the structurally informed alignment dataset BAliBase 3.0, recommend Historian over other alignment tools for evolutionary applications. Historian is available at https://github.com/evoldoers/historian under the Creative Commons Attribution 3.0 US license. ihholmes+historian@gmail.com. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com
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Biological impacts of oil pollution: rocky shores. V. 7
International Nuclear Information System (INIS)
1997-01-01
Most people with access to the sea have at one time enjoyed looking into rockpools and searching for crabs under boulders. Rocky shores have a great deal of fascination for people and they are the closest that many of them will get to the mysteries below the low tide mark. They are found, in some form, on most of the world's coasts and their ecology has been the subject of many books, reports and scientific papers. Rocky shores encompass a variety of intertidal habitats and have a range of vulnerabilities to oil. While some areas are quickly and easily cleaned by natural forces others can trap oil in sensitive sub-habitats which may then be damaged and take many years to recover. Furthermore, rocky shores have an importance in the wider context of marine ecosystems and some provide important local fisheries resources, tourism and amenities. This report describes the factors that make some rocky shores more sensitive to oil spills than others and considers the most appropriate methods of clean-up. Case histories are used to illustrate the effects of spills and spill clean-up, as well as typical recovery rates. (UK)
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Rocky Flats Plant fluidized-bed incinerator
International Nuclear Information System (INIS)
Meile, L.J.; Meyer, F.G.; Johnson, A.J.; Ziegler, D.L.
1982-01-01
Laboratory and pilot-scale testing of a fluidized-bed incineration process for radioactive wastes led to the installation of an 82-kg/hr demonstration unit at Rocky Flats Plant in 1978. Design philosophy and criteria were formulated to fulfill the needs and objectives of an improved radwaste-incineration system. Unique process concepts include low-temperature (550 0 C), flameless, fluidized-bed combustion and catalytic afterburning; in-situ neutralization of acid gases; and dry off-gas cleanup. Detailed descriptions of the process and equipment are presented along with a summary of the equipment and process performance during a 2-1/2 year operational-testing period. Equipment modifications made during the test period are described. Operating personnel requirements for solid-waste burning are shown to be greater than those required for liquid-waste incineration; differences are discussed. Process-utility and raw-materials consumption rates for full-capacity operation are presented and explained. Improvements in equipment and operating procedures are recommended for any future installations. Process flow diagrams, an area floor plan, a process-control-system schematic, and equipment sketches are included
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Inferring genome-wide patterns of admixture in Qataris using fifty-five ancestral populations
Directory of Open Access Journals (Sweden)
Omberg Larsson
2012-06-01
Full Text Available Abstract Background Populations of the Arabian Peninsula have a complex genetic structure that reflects waves of migrations including the earliest human migrations from Africa and eastern Asia, migrations along ancient civilization trading routes and colonization history of recent centuries. Results Here, we present a study of genome-wide admixture in this region, using 156 genotyped individuals from Qatar, a country located at the crossroads of these migration patterns. Since haplotypes of these individuals could have originated from many different populations across the world, we have developed a machine learning method "SupportMix" to infer loci-specific genomic ancestry when simultaneously analyzing many possible ancestral populations. Simulations show that SupportMix is not only more accurate than other popular admixture discovery tools but is the first admixture inference method that can efficiently scale for simultaneous analysis of 50-100 putative ancestral populations while being independent of prior demographic information. Conclusions By simultaneously using the 55 world populations from the Human Genome Diversity Panel, SupportMix was able to extract the fine-scale ancestry of the Qatar population, providing many new observations concerning the ancestry of the region. For example, as well as recapitulating the three major sub-populations in Qatar, composed of mainly Arabic, Persian, and African ancestry, SupportMix additionally identifies the specific ancestry of the Persian group to populations sampled in Greater Persia rather than from China and the ancestry of the African group to sub-Saharan origin and not Southern African Bantu origin as previously thought.
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Johnson, R.C.; Flores, R.M.
1998-01-01
The Rocky Mountain basins of western North America contain vast deposits of coal of Cretaceous through early Tertiary age. Coalbed methane is produced in Rocky Mountain basins at depths ranging from 45 m (150 ft) to 1981 m (6500 ft) from coal of lignite to low-volatile bituminous rank. Although some production has been established in almost all Rocky Mountain basins, commercial production occurs in only a few. despite more than two decades of exploration for coalbed methane in the Rocky Mountain region, it is still difficult to predict production characteristics of coalbed methane wells prior to drilling. Commonly cited problems include low permeabilities, high water production, and coals that are significantly undersaturated with respect to methane. Sources of coalbed gases can be early biogenic, formed during the early stages of coalification, thermogenic, formed during the main stages of coalification, or late stage biogenic, formed as a result of the reintroduction of methane-gnerating bacteria by groundwater after uplift and erosion. Examples of all three types of coalbed gases, and combinations of more than one type, can be found in the Rocky Mountain region. Coals in the Rocky Mountain region achieved their present ranks largely as a result of burial beneath sediments that accumulated during the Laramide orogeny (Late Cretaceous through the end of the eocene) or shortly after. Thermal events since the end of the orogeny have also locally elevated coal ranks. Coal beds in the upper part of high-volatile A bituminous rank or greater commonly occur within much more extensive basin-centered gas deposits which cover large areas of the deeper parts of most Rocky Mountain basins. Within these basin-centered deposits all lithologies, including coals, sandstones, and shales, are gas saturated, and very little water is produced. The interbedded coals and carbonaceous shales are probably the source of much of this gas. Basin-centered gas deposits become overpressured
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Sampling design for long-term regional trends in marine rocky intertidal communities
Irvine, Gail V.; Shelley, Alice
2013-01-01
Probability-based designs reduce bias and allow inference of results to the pool of sites from which they were chosen. We developed and tested probability-based designs for monitoring marine rocky intertidal assemblages at Glacier Bay National Park and Preserve (GLBA), Alaska. A multilevel design was used that varied in scale and inference. The levels included aerial surveys, extensive sampling of 25 sites, and more intensive sampling of 6 sites. Aerial surveys of a subset of intertidal habitat indicated that the original target habitat of bedrock-dominated sites with slope ≤30° was rare. This unexpected finding illustrated one value of probability-based surveys and led to a shift in the target habitat type to include steeper, more mixed rocky habitat. Subsequently, we evaluated the statistical power of different sampling methods and sampling strategies to detect changes in the abundances of the predominant sessile intertidal taxa: barnacles Balanomorpha, the mussel Mytilus trossulus, and the rockweed Fucus distichus subsp. evanescens. There was greatest power to detect trends in Mytilus and lesser power for barnacles and Fucus. Because of its greater power, the extensive, coarse-grained sampling scheme was adopted in subsequent years over the intensive, fine-grained scheme. The sampling attributes that had the largest effects on power included sampling of “vertical” line transects (vs. horizontal line transects or quadrats) and increasing the number of sites. We also evaluated the power of several management-set parameters. Given equal sampling effort, sampling more sites fewer times had greater power. The information gained through intertidal monitoring is likely to be useful in assessing changes due to climate, including ocean acidification; invasive species; trampling effects; and oil spills.
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THERMODYNAMIC LIMITS ON MAGNETODYNAMOS IN ROCKY EXOPLANETS
International Nuclear Information System (INIS)
Gaidos, Eric; Conrad, Clinton P.; Manga, Michael; Hernlund, John
2010-01-01
To ascertain whether magnetic dynamos operate in rocky exoplanets more massive or hotter than the Earth, we developed a parametric model of a differentiated rocky planet and its thermal evolution. Our model reproduces the established properties of Earth's interior and magnetic field at the present time. When applied to Venus, assuming that planet lacks plate tectonics and has a dehydrated mantle with an elevated viscosity, the model shows that the dynamo shuts down or never operated. Our model predicts that at a fixed planet mass, dynamo history is sensitive to core size, but not to the initial inventory of long-lived, heat-producing radionuclides. It predicts that rocky planets larger than 2.5 Earth masses will not develop inner cores because the temperature-pressure slope of the iron solidus becomes flatter than that of the core adiabat. Instead, iron 'snow' will condense near or at the top of these cores, and the net transfer of latent heat upward will suppress convection and a dynamo. More massive planets can have anemic dynamos due to core cooling, but only if they have mobile lids (plate tectonics). The lifetime of these dynamos is shorter with increasing planet mass but longer with higher surface temperature. Massive Venus-like planets with stagnant lids and more viscous mantles will lack dynamos altogether. We identify two alternative sources of magnetic fields on rocky planets: eddy currents induced in the hot or molten upper layers of planets on very short-period orbits, and dynamos in the ionic conducting layers of 'ocean' planets with ∼10% mass in an upper mantle of water (ice).
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Issues evaluation process at Rocky Flats Plant
International Nuclear Information System (INIS)
Smith, L.C.
1992-01-01
This report describes the issues evaluation process for Rocky Flats Plant as established in July 1990. The issues evaluation process was initiated February 27, 1990 with a Charter and Process Overview for short-term implementation. The purpose of the process was to determine the projects required for completion before the Phased Resumption of Plutonium Operations. To determine which projects were required, the issues evaluation process and emphasized risk mitigation, based on a ranking system. The purpose of this report is to document the early design of the issues evaluation process to record the methodologies used that continue as the basis for the ongoing Issues Management Program at Rocky Flats Plant
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International Nuclear Information System (INIS)
Ma, Jing; Chen, Xi; Liu, Yanan; Xie, Qunhui; Sun, Yawen; Chen, Jingshan; Leng, Ling; Yan, Huan; Zhao, Bin; Tang, Naijun
2015-01-01
Ancestral TCDD exposure could induce epigenetic transgenerational phenotypes, which may be mediated in part by imprinted gene inheritance. The aim of our study was to evaluate the transgenerational effects of ancestral TCDD exposure on the imprinted gene insulin-like growth factor-2 (Igf2) in rat somatic tissue. TCDD was administered daily by oral gavage to groups of F0 pregnant SD rats at dose levels of 0 (control), 200 or 800 ng/kg bw during gestation day 8–14. Animal transgenerational model of ancestral exposure to TCDD was carefully built, avoiding sibling inbreeding. Hepatic Igf2 expression of the TCDD male progeny was decreased concomitantly with hepatic damage and increased activities of serum hepatic enzymes both in the F1 and F3 generation. Imprinted Control Region (ICR) of Igf2 manifested a hypermethylated pattern, whereas methylation status in the Differentially Methylated Region 2 (DMR2) showed a hypomethylated manner in the F1 generation. These epigenetic alterations in these two regions maintained similar trends in the F3 generation. Meanwhile, the expressions of DNA methyltransferases (DNMT1, DNMT3A and DNMT3B) changed in a non-monotonic manner both in the F1 and F3 generation. This study provides evidence that ancestral TCDD exposure may promote epigenetic transgenerational alterations of imprinted gene Igf2 in adult somatic tissue. - Highlights: • Ancestral TCDD exposure induces epigenetic transgenerational inheritance. • Ancestral TCDD exposure affects methylation status in ICR and DMR2 region of Igf2. • DNMTs play a role in TCDD induced epigenetic transgenerational changes of Igf2.
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Energy Technology Data Exchange (ETDEWEB)
Ma, Jing; Chen, Xi; Liu, Yanan [Department of Occupational and Environmental Health, School of Public Health, Tianjin Medical University, Tianjin 300070 (China); Xie, Qunhui [State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085 (China); Sun, Yawen; Chen, Jingshan; Leng, Ling; Yan, Huan [Department of Occupational and Environmental Health, School of Public Health, Tianjin Medical University, Tianjin 300070 (China); Zhao, Bin, E-mail: binzhao@rcees.ac.cn [State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085 (China); Tang, Naijun, E-mail: tangnaijun@tijmu.edu.cn [Department of Occupational and Environmental Health, School of Public Health, Tianjin Medical University, Tianjin 300070 (China)
2015-12-01
Ancestral TCDD exposure could induce epigenetic transgenerational phenotypes, which may be mediated in part by imprinted gene inheritance. The aim of our study was to evaluate the transgenerational effects of ancestral TCDD exposure on the imprinted gene insulin-like growth factor-2 (Igf2) in rat somatic tissue. TCDD was administered daily by oral gavage to groups of F0 pregnant SD rats at dose levels of 0 (control), 200 or 800 ng/kg bw during gestation day 8–14. Animal transgenerational model of ancestral exposure to TCDD was carefully built, avoiding sibling inbreeding. Hepatic Igf2 expression of the TCDD male progeny was decreased concomitantly with hepatic damage and increased activities of serum hepatic enzymes both in the F1 and F3 generation. Imprinted Control Region (ICR) of Igf2 manifested a hypermethylated pattern, whereas methylation status in the Differentially Methylated Region 2 (DMR2) showed a hypomethylated manner in the F1 generation. These epigenetic alterations in these two regions maintained similar trends in the F3 generation. Meanwhile, the expressions of DNA methyltransferases (DNMT1, DNMT3A and DNMT3B) changed in a non-monotonic manner both in the F1 and F3 generation. This study provides evidence that ancestral TCDD exposure may promote epigenetic transgenerational alterations of imprinted gene Igf2 in adult somatic tissue. - Highlights: • Ancestral TCDD exposure induces epigenetic transgenerational inheritance. • Ancestral TCDD exposure affects methylation status in ICR and DMR2 region of Igf2. • DNMTs play a role in TCDD induced epigenetic transgenerational changes of Igf2.
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Zhang, Xiao-nan; Wang, Ke-lin; Chen, Hong-song; Zhang, Wei
2008-11-01
By using canonical correspondence analysis (CCA), sixteen landscape indices were adopted to quantitatively analyze the relationships between the landscape structure and rocky desertification in karst region of Huanjiang County, Guangxi Province. The results showed that the first and the second ordination axis of CCA were strongly correlated to the factors of average patch area, average dry land patch area, landscape shape index, and landscape aggregation index. The potential rocky desertification in the region was highly positively correlated with the average dry land patch area and the average fractal dimensions of dry land and shrub land, but negatively correlated with the patch numbers of dry land. Light rocky desertification had obvious positive correlations with the fractal dimension index, average fractal dimension of unused land, and patch numbers of shrub land; while moderate and strong rocky desertification had high positive correlations with the average unused land patch area but negative correlation with the average fractal dimension of shrub land. To some extent, rocky desertification degree might be represented by the values of landscape indices. The gradient variation in karst rocky desertification along landscape structure was clearly presented by the results of CCA.
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Chen, Hua; Chen, Kun
2013-07-01
The distributions of coalescence times and ancestral lineage numbers play an essential role in coalescent modeling and ancestral inference. Both exact distributions of coalescence times and ancestral lineage numbers are expressed as the sum of alternating series, and the terms in the series become numerically intractable for large samples. More computationally attractive are their asymptotic distributions, which were derived in Griffiths (1984) for populations with constant size. In this article, we derive the asymptotic distributions of coalescence times and ancestral lineage numbers for populations with temporally varying size. For a sample of size n, denote by Tm the mth coalescent time, when m + 1 lineages coalesce into m lineages, and An(t) the number of ancestral lineages at time t back from the current generation. Similar to the results in Griffiths (1984), the number of ancestral lineages, An(t), and the coalescence times, Tm, are asymptotically normal, with the mean and variance of these distributions depending on the population size function, N(t). At the very early stage of the coalescent, when t → 0, the number of coalesced lineages n - An(t) follows a Poisson distribution, and as m → n, $$n\\left(n-1\\right){T}_{m}/2N\\left(0\\right)$$ follows a gamma distribution. We demonstrate the accuracy of the asymptotic approximations by comparing to both exact distributions and coalescent simulations. Several applications of the theoretical results are also shown: deriving statistics related to the properties of gene genealogies, such as the time to the most recent common ancestor (TMRCA) and the total branch length (TBL) of the genealogy, and deriving the allele frequency spectrum for large genealogies. With the advent of genomic-level sequencing data for large samples, the asymptotic distributions are expected to have wide applications in theoretical and methodological development for population genetic inference.
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Ljunge, Martin
2014-12-01
This paper presents evidence that generalized trust promotes health. Children of immigrants in a broad set of European countries with ancestry from across the world are studied. Individuals are examined within country of residence using variation in trust across countries of ancestry. The approach addresses reverse causality and concerns that the trust measure picks up institutional factors in the individual's contextual setting. There is a significant positive estimate of ancestral trust in explaining self-assessed health. The finding is robust to accounting for individual, parental, and extensive ancestral country characteristics. Individuals with higher ancestral trust are also less likely to be hampered by health problems in their daily life, providing evidence of trust influencing real life outcomes. Individuals with high trust feel and act healthier, enabling a more productive life.
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Lawrence, R.; Landenburger, L.; Jewett, J.
2007-12-01
Whitebark pine seeds have long been identified as the most significant vegetative food source for grizzly bears in the Greater Yellowstone Ecosystem (GYE) and, hence, a crucial element of suitable grizzly bear habitat. The overall health and status of whitebark pine in the GYE is currently threatened by mountain pine beetle infestations and the spread of whitepine blister rust. Whitebark pine distribution (presence/absence) was mapped for the GYE using Landsat 7 Enhanced Thematic Mapper (ETM+) imagery and topographic data as part of a long-term inter-agency monitoring program. Logistic regression was compared with classification tree analysis (CTA) with and without boosting. Overall comparative classification accuracies for the central portion of the GYE covering three ETM+ images along a single path ranged from 91.6% using logistic regression to 95.8% with See5's CTA algorithm with the maximum 99 boosts. The analysis is being extended to the entire northern Rocky Mountain Ecosystem and extended over decadal time scales. The analysis is being extended to the entire northern Rocky Mountain Ecosystem and extended over decadal time scales.
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International Nuclear Information System (INIS)
Tuor, N. R.; Schubert, A. L.
2002-01-01
Safely accelerating the closure of Rocky Flats to 2006 is a goal shared by many: the State of Colorado, the communities surrounding the site, the U.S. Congress, the Department of Energy, Kaiser-Hill and its team of subcontractors, the site's employees, and taxpayers across the country. On June 30, 2000, Kaiser-Hill (KH) submitted to the Department of Energy (DOE), KH's plan to achieve closure of Rocky Flats by December 15, 2006, for a remaining cost of $3.96 billion (February 1, 2000, to December 15, 2006). The Closure Project Baseline (CPB) is the detailed project plan for accomplishing this ambitious closure goal. This paper will provide a status report on the progress being made toward the closure goal. This paper will: provide a summary of the closure contract completion criteria; give the current cost and schedule variance of the project and the status of key activities; detail important accomplishments of the past year; and discuss the challenges ahead
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Rocky Flats cleanup receives new deadline
International Nuclear Information System (INIS)
Anon.
1993-01-01
The Rocky Flats nuclear weapon plant near Denver narrowly missed a court-ordered shutdown of virtually all cleanup activities when it failed to meet an Aug. 22 deadline for a state permit to store mixed radioactive and hazardous wastes on site. US District Court Judge Lewis Babcock granted a 90-day stay of contempt charges against the US Dept. of Energy, but left open the possibility of civil penalties under the Resource Conservation and Recovery Act. DOE's problems stem from a lawsuit the Sierra Club won two years ago in which Babcock gave Rocky Flats until Aug. 22 to obtain a RCRA permit or interim status from Colorado to store 600 cu yd of mixed wastes. If DOE failed to do so, the court said it could not generate further hazardous wastes at the site
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An Epistemological Analysis of the African Ontology of `Ancestral ...
African Journals Online (AJOL)
The paper explores the contemporary debate surrounding the idea of ancestral reincarnation in African society and philosophy. It analyzes various problem areas having to do with the physical and spiritual status of ancestors, their relationship with their societies of orientation, the philosophical contexts of their existence, ...
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Using Resurrected Ancestral Proviral Proteins to Engineer Virus Resistance
Directory of Open Access Journals (Sweden)
Asunción Delgado
2017-05-01
Full Text Available Proviral factors are host proteins hijacked by viruses for processes essential for virus propagation such as cellular entry and replication. Pathogens and their hosts co-evolve. It follows that replacing a proviral factor with a functional ancestral form of the same protein could prevent viral propagation without fatally compromising organismal fitness. Here, we provide proof of concept of this notion. Thioredoxins serve as general oxidoreductases in all known cells. We report that several laboratory resurrections of Precambrian thioredoxins display substantial levels of functionality within Escherichia coli. Unlike E. coli thioredoxin, however, these ancestral thioredoxins are not efficiently recruited by the bacteriophage T7 for its replisome and therefore prevent phage propagation in E. coli. These results suggest an approach to the engineering of virus resistance. Diseases caused by viruses may have a devastating effect in agriculture. We discuss how the suggested approach could be applied to the engineering of plant virus resistance.
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Energy Technology Data Exchange (ETDEWEB)
Crawford, D.H.G.; Powell, L.W.; Leggett, B.A. [Univ. of Queensland (Australia)] [and others
1995-08-01
Hemochromatosis (HC) is a common inherited disorder of iron metabolism for which neither the gene nor biochemical defect have yet been identified. The aim of this study was to look for clinical evidence that the predominant ancestral haplotype in Australian patients is associated with a common mutation in the gene. We compared indices of iron metabolism and storage in three groups of HC patients categorized according to the presence of the ancestral haplotype (i.e., patients with two copies, one copy, and no copies of the ancestral haplotype). We also examined iron indices in two groups of HC heterozygotes (those with the ancestral haplotype and those without) and in age-matched controls. These analyses indicate that (i) HC patients with two copies of the ancestral haplotype show significantly more severe expression of the disorder than those with one copy or those without, (ii) HC heterozygotes have partial clinical expression, which may be influenced by the presence of the ancestral haplotype in females but not in males, and (iii) the high population frequency of the HC gene may be the result of the selective advantage conferred by protecting heterozygotes against iron deficiency. 18 refs., 3 tabs.
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Release fractions for Rocky Flats specific accidents
International Nuclear Information System (INIS)
Weiss, R.C.
1992-01-01
As Rocky Flats and other DOE facilities begin the transition process towards decommissioning, the nature of the scenarios to be studied in safety analysis will change. Whereas the previous emphasis in safety accidents related to production, now the emphasis is shifting to accidents related tc decommissioning and waste management. Accident scenarios of concern at Rocky Flats now include situations of a different nature and different scale than are represented by most of the existing experimental accident data. This presentation will discuss approaches at sign to use for applying the existing body of release fraction data to this new emphasis. Mention will also be made of ongoing efforts to produce new data and improve the understanding of physical mechanisms involved
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Rocky Mountain spotted fever: a clinician's dilemma.
Masters, Edwin J; Olson, Gary S; Weiner, Scott J; Paddock, Christopher D
2003-04-14
Rocky Mountain spotted fever is still the most lethal tick-vectored illness in the United States. We examine the dilemmas facing the clinician who is evaluating the patient with possible Rocky Mountain spotted fever, with particular attention to the following 8 pitfalls in diagnosis and treatment: (1) waiting for a petechial rash to develop before diagnosis; (2) misdiagnosing as gastroenteritis; (3) discounting a diagnosis when there is no history of a tick bite; (4) using an inappropriate geographic exclusion; (5) using an inappropriate seasonal exclusion; (6) failing to treat on clinical suspicion; (7) failing to elicit an appropriate history; and (8) failing to treat with doxycycline. Early diagnosis and proper treatment save lives.
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Idaho National Engineering Laboratory code assessment of the Rocky Flats transuranic waste
Energy Technology Data Exchange (ETDEWEB)
NONE
1995-07-01
This report is an assessment of the content codes associated with transuranic waste shipped from the Rocky Flats Plant in Golden, Colorado, to INEL. The primary objective of this document is to characterize and describe the transuranic wastes shipped to INEL from Rocky Flats by item description code (IDC). This information will aid INEL in determining if the waste meets the waste acceptance criteria (WAC) of the Waste Isolation Pilot Plant (WIPP). The waste covered by this content code assessment was shipped from Rocky Flats between 1985 and 1989. These years coincide with the dates for information available in the Rocky Flats Solid Waste Information Management System (SWIMS). The majority of waste shipped during this time was certified to the existing WIPP WAC. This waste is referred to as precertified waste. Reassessment of these precertified waste containers is necessary because of changes in the WIPP WAC. To accomplish this assessment, the analytical and process knowledge available on the various IDCs used at Rocky Flats were evaluated. Rocky Flats sources for this information include employee interviews, SWIMS, Transuranic Waste Certification Program, Transuranic Waste Inspection Procedure, Backlog Waste Baseline Books, WIPP Experimental Waste Characterization Program (headspace analysis), and other related documents, procedures, and programs. Summaries are provided of: (a) certification information, (b) waste description, (c) generation source, (d) recovery method, (e) waste packaging and handling information, (f) container preparation information, (g) assay information, (h) inspection information, (i) analytical data, and (j) RCRA characterization.
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Soil decontamination at Rocky Flats
International Nuclear Information System (INIS)
Olsen, R.L.; Hayden, J.A.; Alford, C.E.; Kochen, R.L.; Stevens, J.R.
1979-01-01
A soils decontamination project was initiated, to remove actinides from soils at Rocky Flats. Wet screening, attrition scrubbing with Calgon at high pH, attrition scrubbing at low pH, and cationic flotation were investigated. Pilot plant studies were carried out. Conceptual designs have been generated for mounting the process in semi-trailers
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Rocky Mountain spotted fever, Colombia.
Hidalgo, Marylin; Orejuela, Leonora; Fuya, Patricia; Carrillo, Pilar; Hernandez, Jorge; Parra, Edgar; Keng, Colette; Small, Melissa; Olano, Juan P; Bouyer, Donald; Castaneda, Elizabeth; Walker, David; Valbuena, Gustavo
2007-07-01
We investigated 2 fatal cases of Rocky Mountain spotted fever that occurred in 2003 and 2004 near the same locality in Colombia where the disease was first reported in the 1930s. A retrospective serosurvey of febrile patients showed that > 21% of the serum samples had antibodies aaainst spotted fever group rickettsiae.
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Benchmarking and performance improvement at Rocky Flats Technology Site
International Nuclear Information System (INIS)
Elliott, C.; Doyle, G.; Featherman, W.L.
1997-03-01
The Rocky Flats Environmental Technology Site has initiated a major work process improvement campaign using the tools of formalized benchmarking and streamlining. This paper provides insights into some of the process improvement activities performed at Rocky Flats from November 1995 through December 1996. It reviews the background, motivation, methodology, results, and lessons learned from this ongoing effort. The paper also presents important gains realized through process analysis and improvement including significant cost savings, productivity improvements, and an enhanced understanding of site work processes
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Kawasaki disease following Rocky Mountain spotted fever: a case report.
Bal, Aswine K; Kairys, Steven W
2009-07-06
Kawasaki disease is an idiopathic acute systemic vasculitis of childhood. Although it simulates the clinical features of many infectious diseases, an infectious etiology has not been established. This is the first reported case of Kawasaki disease following Rocky Mountain spotted fever. We report the case of a 4-year-old girl who presented with fever and petechial rash. Serology confirmed Rocky Mountain spotted fever. While being treated with intravenous doxycycline, she developed swelling of her hands and feet. She had the clinical features of Kawasaki disease which resolved after therapy with intravenous immune globulin (IVIG) and aspirin. This case report suggests that Kawasaki disease can occur concurrently or immediately after a rickettsial illness such as Rocky Mountain spotted fever, hypothesizing an antigen-driven immune response to a rickettsial antigen.
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Proceedings of the second symposium on the geology of Rocky Mountain coal, 1977
Energy Technology Data Exchange (ETDEWEB)
Hodgson, H. E. [ed.
1978-01-01
The 1977 Symposium on the Geology of Rocky Mountain Coal was held May 9 and 10 on the campus of the Colorado School of Mines in Golden, Colorado. The 1977 Symposium was sponsored by the Colorado Geological Survey and the US Geological Survey. The 1977 Symposium consisted of four technical sessions: Depositional Models for Coal Exploration in the Rocky Mountain Cretaceous; Stratigraphy and Depositional Environments of Rocky Mountain Tertiary Coal Deposits; Depositional Models for Coal Exploration in non-Rocky Mountain Regions; and Application of Geology to Coal Mining and Coal Mine Planning. Several papers discuss geophysical survey and well logging techniques applied to the exploration of coal deposits and for mine planning. Fouteen papers have been entered individually into EDB and ERA. (LTN)
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The effect of a small creek valley on drainage flows in the Rocky Flats region
International Nuclear Information System (INIS)
Porch, W.
1996-01-01
Regional scale circulation and mountain-plain interactions and effects on boundary layer development are important for understanding the fate of an atmospheric release from Rocky Flats, Colorado. Numerical modeling of Front Range topographic effects near Rocky Flats have shown that though the Front Range dominates large scale flow features, small-scale terrain features near Rocky Flats are important to local transport during nighttime drainage flow conditions. Rocky Flats has been the focus of interest for the Department of Energy's Atmospheric Studies in Complex Terrain (ASCOT) program
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Map of mixed prairie grassland vegetation, Rocky Flats, Colorado
Energy Technology Data Exchange (ETDEWEB)
Clark, S J.V.; Webber, P J; Komarkova, V; Weber, W A
1980-01-01
A color vegetation map at the scale of 1:12,000 of the area surrounding the Rocky Flats, Rockwell International Plant near Boulder, Colorado, provides a permanent record of baseline data which can be used to monitor changes in both vegetation and environment and thus to contribute to future land management and land-use policies. Sixteen mapping units based on species composition were identified, and characterized by two 10-m/sup 2/ vegetation stands each. These were grouped into prairie, pasture, and valley side on the basis of their species composition. Both the mapping units and these major groups were later confirmed by agglomerative clustering analysis of the 32 vegetation stands on the basis of species composition. A modified Bray and Curtis ordination was used to determine the environmental factor complexes controlling the distribution of vegetation at Rocky flats. Recommendations are made for future policies of environmental management and predictions of the response to environmental change of the present vegetation at the Rocky Flats site.
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Extraction of Rocky Desertification from Disp Imagery: a Case Study of Liupanshui, Guizhou, China
Zhou, G.; Wu, Z.; Wang, W.; Shi, Y.; Mao, G.; Huang, Y.; Jia, B.; Gao, G.; Chen, P.
2017-09-01
Karst rocky desertification is a typical type of land degradation in Guizhou Province, China. It causes great ecological and economical implications to the local people. This paper utilized the declassified intelligence satellite photography (DISP) of 1960s to extract the karst rocky desertification area to analyze the early situation of karst rocky desertification in Liupanshui, Guizhou, China. Due to the lack of ground control points and parameters of the satellite, a polynomial orthographic correction model with considering altitude difference correction is proposed for orthorectification of DISP imagery. With the proposed model, the 96 DISP images from four missions are orthorectified. The images are assembled into a seamless image map of the karst area of Guizhou, China. The assembled image map is produced to thematic map of karst rocky desertification by visual interpretation in Liupanshui city. With the assembled image map, extraction of rocky desertification is conducted.
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EXTRACTION OF ROCKY DESERTIFICATION FROM DISP IMAGERY: A CASE STUDY OF LIUPANSHUI, GUIZHOU, CHINA
Directory of Open Access Journals (Sweden)
G. Zhou
2017-09-01
Full Text Available Karst rocky desertification is a typical type of land degradation in Guizhou Province, China. It causes great ecological and economical implications to the local people. This paper utilized the declassified intelligence satellite photography (DISP of 1960s to extract the karst rocky desertification area to analyze the early situation of karst rocky desertification in Liupanshui, Guizhou, China. Due to the lack of ground control points and parameters of the satellite, a polynomial orthographic correction model with considering altitude difference correction is proposed for orthorectification of DISP imagery. With the proposed model, the 96 DISP images from four missions are orthorectified. The images are assembled into a seamless image map of the karst area of Guizhou, China. The assembled image map is produced to thematic map of karst rocky desertification by visual interpretation in Liupanshui city. With the assembled image map, extraction of rocky desertification is conducted.
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Effects of ancestral x irradiation followed by random mating on body weight of rats
International Nuclear Information System (INIS)
Gianola, D.; Chapman, A.B.; Rutledge, J.J.
1977-01-01
Effects of nine generations of 450R per generation of ancestral spermatogonial x irradiation of inbred rats on body weight were examined. After six generations of random mating (avoiding inbreeding) following the termination of irradiation, descendants of irradiated males (R) were significantly lighter than their controls (C) at 3 and 6 weeks, but not at 10 weeks of age. However, differences in growth between R and C populations were small. Among-litter and within-litter variance estimates were generally larger in the R lines than in the C lines, suggesting that selection responses would be greater in R than in C lines. In conjunction with previous evidence--obtained during the irradiation phase of the experiment--this suggested that more rapid response to selection for 6-week body weight, in particular, might accrue in the R lines
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Rocky Mountain spotted fever, Panama.
Estripeaut, Dora; Aramburú, María Gabriela; Sáez-Llorens, Xavier; Thompson, Herbert A; Dasch, Gregory A; Paddock, Christopher D; Zaki, Sherif; Eremeeva, Marina E
2007-11-01
We describe a fatal pediatric case of Rocky Mountain spotted fever in Panama, the first, to our knowledge, since the 1950s. Diagnosis was established by immunohistochemistry, PCR, and isolation of Rickettsia rickettsii from postmortem tissues. Molecular typing demonstrated strong relatedness of the isolate to strains of R. rickettsii from Central and South America.
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Ancestral state reconstruction, rate heterogeneity, and the evolution of reptile viviparity.
King, Benedict; Lee, Michael S Y
2015-05-01
Virtually all models for reconstructing ancestral states for discrete characters make the crucial assumption that the trait of interest evolves at a uniform rate across the entire tree. However, this assumption is unlikely to hold in many situations, particularly as ancestral state reconstructions are being performed on increasingly large phylogenies. Here, we show how failure to account for such variable evolutionary rates can cause highly anomalous (and likely incorrect) results, while three methods that accommodate rate variability yield the opposite, more plausible, and more robust reconstructions. The random local clock method, implemented in BEAST, estimates the position and magnitude of rate changes on the tree; split BiSSE estimates separate rate parameters for pre-specified clades; and the hidden rates model partitions each character state into a number of rate categories. Simulations show the inadequacy of traditional models when characters evolve with both asymmetry (different rates of change between states within a character) and heterotachy (different rates of character evolution across different clades). The importance of accounting for rate heterogeneity in ancestral state reconstruction is highlighted empirically with a new analysis of the evolution of viviparity in squamate reptiles, which reveal a predominance of forward (oviparous-viviparous) transitions and very few reversals. © The Author(s) 2015. Published by Oxford University Press, on behalf of the Society of Systematic Biologists. All rights reserved. For Permissions, please email: journals.permissions@oup.com.
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Isolation of Ancestral Sylvatic Dengue Virus Type 1, Malaysia
Teoh, Boon-Teong; Sam, Sing-Sin; Abd-Jamil, Juraina
2010-01-01
Ancestral sylvatic dengue virus type 1, which was isolated from a monkey in 1972, was isolated from a patient with dengue fever in Malaysia. The virus is neutralized by serum of patients with endemic DENV-1 infection. Rare isolation of this virus suggests a limited spillover infection from an otherwise restricted sylvatic cycle. PMID:21029545
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History of Rocky Flats waste streams
International Nuclear Information System (INIS)
Luckett, L.L.; Dickman, A.A.; Wells, C.R.; Vickery, D.J.
1982-01-01
An analysis of the waste streams at Rocky Flats was done to provide information for the Waste Certification program. This program has involved studying the types and amounts of retrievable transuranic (TRU) waste from Rocky Flats that is stored at the Idaho National Engineering Laboratory (INEL). The information can be used to estimate the types and amounts of waste that will need to be permanently stored in the Waste Isolation Pilot Plant (WIPP). The study covered mostly the eight-year period from June 1971 to June 1979. The types, amounts, and plutonium content of TRU waste and the areas or operations responsible for generating the waste are summarized in this waste stream history report. From the period studied, a total of 24,546,153 lbs of waste containing 211,148 g of plutonium currently occupies 709,497 cu ft of storage space at INEL
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Radiological/Health physics program assessement at Rocky Flats, the process
International Nuclear Information System (INIS)
Psomas, P.O.
1996-01-01
The Department of Energy, Rocky Flats Office, Safety and Health Group, Health Physics Team (HPT) is responsible for oversight of the Radiation Protection and Health Physics Program (RPHP) of the Integrating Management Contractor (IMC), Kaiser-Hill (K-H) operations at the Rocky Flats Environmental Technology Site (RFETS). As of 1 January 1996 the Rocky Flats Plant employed 300 DOE and 4,300 contractor personnel (K-H and their subcontractors). WSI is a subcontractor and provides plant security. To accomplish the RPHP program oversight HPT personnel developed a systematic methodology for performing a functional RPHP Assessment. The initial process included development of a flow diagram identifying all programmatic elements and assessment criteria documents. Formulation of plans for conducting interviews and performance of assessments constituted the second major effort. The generation of assessment reports was the final step, based on the results of this process. This assessment will be a 6 person-year effort, over the next three years. This process is the most comprehensive assessment of any Radiation Protection and Health Physics (RPHP) Program ever performed at Rocky Flats. The results of these efforts will establish a baseline for future RPHP Program assessments at RFETS. This methodology has been well-received by contractor personnel and creates no Privacy Act violations or other misunderstandings
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Ancestral Variations in the Shape and Size of the Zygoma.
Oettlé, Anna C; Demeter, Fabrice P; L'abbé, Ericka N
2017-01-01
The variable development of the zygoma, dictating its shape and size variations among ancestral groups, has important clinical implications and valuable anthropological and evolutionary inferences. The purpose of the study was to review the literature regarding the variations in the zygoma with ancestry. Ancestral variation in the zygoma reflects genetic variations because of genetic drift as well as natural selection and epigenetic changes to adapt to diet and climate variations with possible intensification by isolation. Prominence of the zygoma, zygomaxillary tuberosity, and malar tubercle have been associated with Eastern Asian populations in whom these features intensified. Prominence of the zygoma is also associated with groups from Eastern Europe and the rest of Asia. Diffusion of these traits occurred across the Behring Sea to the Arctic areas and to North and South America. The greatest zygomatic projections are exhibited in Arctic groups as an adaptation to extreme cold conditions, while Native South American groups also present with other features of facial robusticity. Groups from Australia, Malaysia, and Oceania show prominence of the zygoma to a certain extent, possibly because of archaic occupations by undifferentiated Southeast Asian populations. More recent interactions with Chinese groups might explain the prominent cheekbones noted in certain South African groups. Many deductions regarding evolutionary processes and diversifications of early groups have been made. Cognisance of these ancestral variations also have implications for forensic anthropological assessments as well as plastic and reconstructive surgery. More studies are needed to improve accuracy of forensic anthropological identification techniques. Anat Rec, 300:196-208, 2017. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.
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What was the ancestral sex-determining mechanism in amniote vertebrates?
Johnson Pokorná, Martina; Kratochvíl, Lukáš
2016-02-01
Amniote vertebrates, the group consisting of mammals and reptiles including birds, possess various mechanisms of sex determination. Under environmental sex determination (ESD), the sex of individuals depends on the environmental conditions occurring during their development and therefore there are no sexual differences present in their genotypes. Alternatively, through the mode of genotypic sex determination (GSD), sex is determined by a sex-specific genotype, i.e. by the combination of sex chromosomes at various stages of differentiation at conception. As well as influencing sex determination, sex-specific parts of genomes may, and often do, develop specific reproductive or ecological roles in their bearers. Accordingly, an individual with a mismatch between phenotypic (gonadal) and genotypic sex, for example an individual sex-reversed by environmental effects, should have a lower fitness due to the lack of specialized, sex-specific parts of their genome. In this case, evolutionary transitions from GSD to ESD should be less likely than transitions in the opposite direction. This prediction contrasts with the view that GSD was the ancestral sex-determining mechanism for amniote vertebrates. Ancestral GSD would require several transitions from GSD to ESD associated with an independent dedifferentiation of sex chromosomes, at least in the ancestors of crocodiles, turtles, and lepidosaurs (tuataras and squamate reptiles). In this review, we argue that the alternative theory postulating ESD as ancestral in amniotes is more parsimonious and is largely concordant with the theoretical expectations and current knowledge of the phylogenetic distribution and homology of sex-determining mechanisms. © 2014 Cambridge Philosophical Society.
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Cases in which ancestral maximum likelihood will be confusingly misleading.
Handelman, Tomer; Chor, Benny
2017-05-07
Ancestral maximum likelihood (AML) is a phylogenetic tree reconstruction criteria that "lies between" maximum parsimony (MP) and maximum likelihood (ML). ML has long been known to be statistically consistent. On the other hand, Felsenstein (1978) showed that MP is statistically inconsistent, and even positively misleading: There are cases where the parsimony criteria, applied to data generated according to one tree topology, will be optimized on a different tree topology. The question of weather AML is statistically consistent or not has been open for a long time. Mossel et al. (2009) have shown that AML can "shrink" short tree edges, resulting in a star tree with no internal resolution, which yields a better AML score than the original (resolved) model. This result implies that AML is statistically inconsistent, but not that it is positively misleading, because the star tree is compatible with any other topology. We show that AML is confusingly misleading: For some simple, four taxa (resolved) tree, the ancestral likelihood optimization criteria is maximized on an incorrect (resolved) tree topology, as well as on a star tree (both with specific edge lengths), while the tree with the original, correct topology, has strictly lower ancestral likelihood. Interestingly, the two short edges in the incorrect, resolved tree topology are of length zero, and are not adjacent, so this resolved tree is in fact a simple path. While for MP, the underlying phenomenon can be described as long edge attraction, it turns out that here we have long edge repulsion. Copyright © 2017. Published by Elsevier Ltd.
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Using Resurrected Ancestral Proviral Proteins to Engineer Virus Resistance.
Delgado, Asunción; Arco, Rocio; Ibarra-Molero, Beatriz; Sanchez-Ruiz, Jose M
2017-05-09
Proviral factors are host proteins hijacked by viruses for processes essential for virus propagation such as cellular entry and replication. Pathogens and their hosts co-evolve. It follows that replacing a proviral factor with a functional ancestral form of the same protein could prevent viral propagation without fatally compromising organismal fitness. Here, we provide proof of concept of this notion. Thioredoxins serve as general oxidoreductases in all known cells. We report that several laboratory resurrections of Precambrian thioredoxins display substantial levels of functionality within Escherichia coli. Unlike E. coli thioredoxin, however, these ancestral thioredoxins are not efficiently recruited by the bacteriophage T7 for its replisome and therefore prevent phage propagation in E. coli. These results suggest an approach to the engineering of virus resistance. Diseases caused by viruses may have a devastating effect in agriculture. We discuss how the suggested approach could be applied to the engineering of plant virus resistance. Copyright © 2017 The Author(s). Published by Elsevier Inc. All rights reserved.
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[Rocky Mountain spotted fever in an American tourist].
de Pender, A M G; Bauer, A G C; van Genderen, P J J
2005-04-02
In a 28-year-old male American tourist who presented in the hospital with fever, cold shivers, headache, nausea, myalgia and arthralgia, Rocky Mountain spotted fever was suspected, partly because he came from an endemic region (the state of Georgia). The patient was treated with doxycycline, 100 mg b.i.d.; 9 days after the first appearance of the symptoms, the diagnosis was confirmed by the report of a positive antibody titre against Rickettsia rickettsii. The patient did not have exanthema. He was discharged in good general condition after two weeks of treatment. Rocky Mountain spotted fever, caused by the Gram-negative bacterium R. rickettsii, is a serious rickettsiosis. The disease is seen only sporadically in the Netherlands because the ticks in the Netherlands do not carry the bacterium. The travel history is still not a standard component of the anamnesis and is therefore often forgotten. This can lead to under-diagnosis and delayed treatment of diseases that were formerly limited to the continent. The early recognition and treatment of Rocky Mountain spotted fever is important since delayed treatment is associated with a clear increase in both morbidity and mortality.
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Kawasaki disease following Rocky Mountain spotted fever: a case report
Directory of Open Access Journals (Sweden)
Bal Aswine K
2009-07-01
Full Text Available Abstract Introduction Kawasaki disease is an idiopathic acute systemic vasculitis of childhood. Although it simulates the clinical features of many infectious diseases, an infectious etiology has not been established. This is the first reported case of Kawasaki disease following Rocky Mountain spotted fever. Case presentation We report the case of a 4-year-old girl who presented with fever and petechial rash. Serology confirmed Rocky Mountain spotted fever. While being treated with intravenous doxycycline, she developed swelling of her hands and feet. She had the clinical features of Kawasaki disease which resolved after therapy with intravenous immune globulin (IVIG and aspirin. Conclusion This case report suggests that Kawasaki disease can occur concurrently or immediately after a rickettsial illness such as Rocky Mountain spotted fever, hypothesizing an antigen-driven immune response to a rickettsial antigen.
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DEFF Research Database (Denmark)
Fahnøe, Ulrik; Pedersen, Anders Gorm; Dräger, Carolin
2015-01-01
necessarily be the descendant of a functional ancestor, we hypothesized that it should be possible to produce functional clones by reconstructing ancestral sequences. To test this we used phylogenetic methods to infer two ancestral sequences, which were then reconstructed as cDNA clones. Viruses rescued from...... the reconstructed cDNAs were tested in cell culture and pigs. Both reconstructed ancestral genomes proved functional, and displayed distinct phenotypes in vitro and in vivo. We suggest that reconstruction of ancestral viruses is a useful tool for experimental and computational investigations of virulence and viral...... evolution. Importantly, ancestral reconstruction can be done even on the basis of a set of sequences that all correspond to non-functional variants....
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John, David A.; du Bray, Edward A.; Henry, Christopher D.; Vikre, Peter
2015-01-01
Many epithermal gold-silver deposits are temporally and spatially associated with late Oligocene to Pliocene magmatism of the southern ancestral Cascade arc in western Nevada and eastern California. These deposits, which include both quartz-adularia (low- and intermediate-sulfidation; Comstock Lode, Tonopah, Bodie) and quartz-alunite (high-sulfidation; Goldfield, Paradise Peak) types, were major producers of gold and silver. Ancestral Cascade arc magmatism preceded that of the modern High Cascades arc and reflects subduction of the Farallon plate beneath North America. Ancestral arc magmatism began about 45 Ma, continued until about 3 Ma, and extended from near the Canada-United States border in Washington southward to about 250 km southeast of Reno, Nevada. The ancestral arc was split into northern and southern segments across an inferred tear in the subducting slab between Mount Shasta and Lassen Peak in northern California. The southern segment extends between 42°N in northern California and 37°N in western Nevada and was active from about 30 to 3 Ma. It is bounded on the east by the northeast edge of the Walker Lane. Ancestral arc volcanism represents an abrupt change in composition and style of magmatism relative to that in central Nevada. Large volume, caldera-forming, silicic ignimbrites associated with the 37 to 19 Ma ignimbrite flareup are dominant in central Nevada, whereas volcanic centers of the ancestral arc in western Nevada consist of andesitic stratovolcanoes and dacitic to rhyolitic lava domes that mostly formed between 25 and 4 Ma. Both ancestral arc and ignimbrite flareup magmatism resulted from rollback of the shallowly dipping slab that began about 45 Ma in northeast Nevada and migrated south-southwest with time. Most southern segment ancestral arc rocks have oxidized, high potassium, calc-alkaline compositions with silica contents ranging continuously from about 55 to 77 wt%. Most lavas are porphyritic and contain coarse plagioclase
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Perianth evolution in Ranunculaceae: are petals ancestral in the family?
Directory of Open Access Journals (Sweden)
Sophie Nadot
2016-04-01
Full Text Available Progress has been made recently towards the elucidation of phylogenetic relationships among subfamilies and tribes of the Ranunculaceae – the most recent hypothesis was published in 2016 by our team. Although relationships among the 10 tribes of the subfamily Ranunculoideae remain incompletely supported, this hypothesis provides an interesting framework to address the key issue of the ancestral vs. derived nature of a differentiated perianth within the family, and at the level of Ranunculales as a whole. Here, we present ancestral state reconstructions for several perianth characters, such as differentiation into sepals and petals, shape of petals, presence/absence of nectaries, and petaloid or sepaloid aspect of sepals. Characters were scored using the PROTEUS database and optimized on the most recent phylogeny of Ranunculaceae using parsimony and maximum likelihood methods. The results are discussed with regard to recent evo-devo studies focused on identifying genes involved in floral organs identity (the so-called ABC model in Ranunculales.
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Are seagrass beds indicators of anthropogenic nutrient stress in the rocky intertidal?
International Nuclear Information System (INIS)
Honig, Susanna E.; Mahoney, Brenna; Glanz, Jess S.; Hughes, Brent B.
2017-01-01
It is well established that anthropogenic nutrient inputs harm estuarine seagrasses, but the influence of nutrients in rocky intertidal ecosystems is less clear. In this study, we investigated the effect of anthropogenic nutrient loading on Phyllospadix spp., a rocky intertidal seagrass, at local and regional scales. At sites along California, Washington, and Oregon, we demonstrated a significant, negative correlation of urban development and Phyllospadix bed thickness. These results were echoed locally along an urban gradient on the central California coast, where Phyllospadix shoot δ 15 N was negatively associated with Phyllospadix bed thickness, and experimentally, where nutrient additions in mesocosms reduced Phyllospadix shoot formation and increased epiphytic cover on Phyllospadix shoots. These findings provide evidence that coastal development can threaten rocky intertidal seagrasses through increased epiphytism. Considering that seagrasses provide vital ecosystem services, mitigating eutrophication and other factors associated with development in the rocky intertidal coastal zone should be a management priority. - Highlights: • The effect of nutrient loading on rocky intertidal seagrasses is not well studied. • Regionally, development was negatively associated with Phyllospadix bed thickness. • Locally, shoot δ 15 N was negatively associated with Phyllospadix bed thickness. • Mesocosms with added nutrients had a net loss in shoots and increased epiphytes. • Nutrient loading may have a negative effect on intertidal seagrass bed health.
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Establishing bounding internal dose estimates for thorium activities at Rocky Flats.
Ulsh, Brant A; Rich, Bryce L; Chew, Melton H; Morris, Robert L; Sharfi, Mutty; Rolfes, Mark R
2008-07-01
As part of an evaluation of a Special Exposure Cohort petition filed on behalf of workers at the Rocky Flats Plant, the National Institute for Occupational Safety and Health (NIOSH) was required to demonstrate that bounding values could be established for radiation doses due to the potential intake of all radionuclides present at the facility. The main radioactive elements of interest at Rocky Flats were plutonium and uranium, but much smaller quantities of several other elements, including thorium, were occasionally handled at the site. Bounding potential doses from thorium has proven challenging at other sites due to the early historical difficulty in detecting this element through urinalysis methods and the relatively high internal dose delivered per unit intake. This paper reports the results of NIOSH's investigation of the uses of thorium at Rocky Flats and provides bounding dose reconstructions for these operations. During this investigation, NIOSH reviewed unclassified reports, unclassified extracts of classified materials, material balance and inventory ledgers, monthly progress reports from various groups, and health physics field logbooks, and conducted interviews with former Rocky Flats workers. Thorium operations included: (1) an experimental metal forming project with 240 kg of thorium in 1960; (2) the use of pre-formed parts in weapons mockups; (3) the removal of Th from U; (4) numerous analytical procedures involving trace quantities of thorium; and (5) the possible experimental use of thorium as a mold coating compound. The thorium handling operations at Rocky Flats were limited in scope, well-monitored and documented, and potential doses can be bounded.
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Approximate maximum parsimony and ancestral maximum likelihood.
Alon, Noga; Chor, Benny; Pardi, Fabio; Rapoport, Anat
2010-01-01
We explore the maximum parsimony (MP) and ancestral maximum likelihood (AML) criteria in phylogenetic tree reconstruction. Both problems are NP-hard, so we seek approximate solutions. We formulate the two problems as Steiner tree problems under appropriate distances. The gist of our approach is the succinct characterization of Steiner trees for a small number of leaves for the two distances. This enables the use of known Steiner tree approximation algorithms. The approach leads to a 16/9 approximation ratio for AML and asymptotically to a 1.55 approximation ratio for MP.
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Restoration of genetic connectivity among Northern Rockies wolf populations.
Hebblewhite, Mark; Musiani, Marco; Mills, L Scott
2010-10-01
Probably no conservation genetics issue is currently more controversial than the question of whether grey wolves (Canis lupus) in the Northern Rockies have recovered to genetically effective levels. Following the dispersal-based recolonization of Northwestern Montana from Canada, and reintroductions to Yellowstone and Central Idaho, wolves have vastly exceeded population recovery goals of 300 wolves distributed in at least 10 breeding pairs in each of Wyoming, Idaho and Montana. With >1700 wolves currently, efforts to delist wolves from endangered status have become mired in legal battles over the distinct population segment (DPS) clause of the Endangered Species Act (ESA), and whether subpopulations within the DPS were genetically isolated. An earlier study by vonHoldt et al. (2008) suggested Yellowstone National Park wolves were indeed isolated and was used against delisting in 2008. Since then, wolves were temporarily delisted, and a first controversial hunting season occurred in fall of 2009. Yet, concerns over the genetic recovery of wolves in the Northern Rockies remain, and upcoming District court rulings in the summer of 2010 will probably include consideration of gene flow between subpopulations. In this issue of Molecular Ecology, vonHoldt et al. (2010) conduct the largest analysis of gene flow and population structure of the Northern Rockies wolves to date. Using an impressive sampling design and novel analytic methods, vonHoldt et al. (2010) show substantial levels of gene flow between three identified subpopulations of wolves within the Northern Rockies, clarifying previous analyses and convincingly showing genetic recovery. © 2010 Blackwell Publishing Ltd.
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Early Hydrodynamic Escape Limits Rocky Planets to Less Than or Equal to 1.6 Earth Radii
Lehmer, O. R.; Catling, D. C.
2017-01-01
In the past decade thousands of exoplanet candidates and hundreds of confirmed exoplanets have been found. For sub-Neptune-sized planets, those less than approx. 10 Earth masses, we can separate planets into two broad categories: predominantly rocky planets, and gaseous planets with thick volatile sheaths. Observations and subsequent analysis of these planets show that rocky planets are only found with radii less than approx. 1.6 Earth radii. No rocky planet has yet been found that violates this limit. We propose that hydrodynamic escape of hydrogen rich protoatmospheres, accreted by forming planets, explains the limit in rocky planet size. Following the hydrodynamic escape model employed by Luger et al. (2015), we modelled the XUV driven escape from young planets (less than approx.100 Myr in age) around a Sun-like star. With a simple, first-order model we found that the rocky planet radii limit occurs consistently at approx. 1.6 Earth radii across a wide range of plausible parameter spaces. Our model shows that hydrodynamic escape can explain the observed cutoff between rocky and gaseous planets. Fig. 1 shows the results of our model for rocky planets between 0.5 and 10 Earth masses that accrete 3 wt. % H2/He during formation. The simulation was run for 100 Myr, after that time the XUV flux drops off exponentially and hydrodynamic escape drops with it. A cutoff between rocky planets and gaseous ones is clearly seen at approx. 1.5-1.6 Earth radii. We are only interested in the upper size limit for rocky planets. As such, we assumed pure hydrogen atmospheres and the highest possible isothermal atmospheric temperatures, which will produce an upper limit on the hydrodynamic loss rate. Previous work shows that a reasonable approximation for an upper temperature limit in a hydrogen rich protoatmosphere is 2000-3000 K, consistent with our assumptions. From these results, we propose that the observed dichotomy between mini-Neptunes and rocky worlds is simply explained by
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Numerical simulation of atmospheric dispersion in the vicinity of the Rocky Flats plant
International Nuclear Information System (INIS)
Bossert, J.E.; Poulos, G.S.
1993-01-01
The Atmospheric Studies in Complex Terrain (ASCOT) program sponsored a field experiment in the winter of 1991 near Rocky Flats, Colorado. Both meteorological and tracer dispersion measurements were taken. These two data sets provided an opportunity to investigate the influence of terrain-generated, radiatively-driven flows on the dispersion of the tracer. In this study, we use the Regional Atmospheric Modeling System (RAMS) to simulate meteorological conditions and tracer dispersion on the case night of 4--5 February 1991. The simulations were developed to examine the influence of nocturnal drainage flow from various topography regimes on the dispersion of tracer from the Rocky Flats plant. The simulation described herein demonstrates the extent to which Rocky Mountain drainage winds influence the flow at the mountain/plain interface for a particular case night, and shows the potential importance of canyon drainage on dispersion from the Rocky Flats area
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Rocky Mountain spotted fever in Mexico: past, present, and future.
Álvarez-Hernández, Gerardo; Roldán, Jesús Felipe González; Milan, Néstor Saúl Hernández; Lash, R Ryan; Behravesh, Casey Barton; Paddock, Christopher D
2017-06-01
Rocky Mountain spotted fever, a tick-borne zoonosis caused by Rickettsia rickettsii, is among the most lethal of all infectious diseases in the Americas. In Mexico, the disease was first described during the early 1940s by scientists who carefully documented specific environmental determinants responsible for devastating outbreaks in several communities in the states of Sinaloa, Sonora, Durango, and Coahuila. These investigators also described the pivotal roles of domesticated dogs and Rhipicephalus sanguineus sensu lato (brown dog ticks) as drivers of epidemic levels of Rocky Mountain spotted fever. After several decades of quiescence, the disease re-emerged in Sonora and Baja California during the early 21st century, driven by the same environmental circumstances that perpetuated outbreaks in Mexico during the 1940s. This Review explores the history of Rocky Mountain spotted fever in Mexico, current epidemiology, and the multiple clinical, economic, and social challenges that must be considered in the control and prevention of this life-threatening illness. Copyright © 2017 Elsevier Ltd. All rights reserved.
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Reconstruction of ancestral RNA sequences under multiple structural constraints.
Tremblay-Savard, Olivier; Reinharz, Vladimir; Waldispühl, Jérôme
2016-11-11
Secondary structures form the scaffold of multiple sequence alignment of non-coding RNA (ncRNA) families. An accurate reconstruction of ancestral ncRNAs must use this structural signal. However, the inference of ancestors of a single ncRNA family with a single consensus structure may bias the results towards sequences with high affinity to this structure, which are far from the true ancestors. In this paper, we introduce achARNement, a maximum parsimony approach that, given two alignments of homologous ncRNA families with consensus secondary structures and a phylogenetic tree, simultaneously calculates ancestral RNA sequences for these two families. We test our methodology on simulated data sets, and show that achARNement outperforms classical maximum parsimony approaches in terms of accuracy, but also reduces by several orders of magnitude the number of candidate sequences. To conclude this study, we apply our algorithms on the Glm clan and the FinP-traJ clan from the Rfam database. Our results show that our methods reconstruct small sets of high-quality candidate ancestors with better agreement to the two target structures than with classical approaches. Our program is freely available at: http://csb.cs.mcgill.ca/acharnement .
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Distinct crustal isostasy trends east and west of the Rocky Mountain Front
Schmandt, Brandon
2015-12-14
© 2015. American Geophysical Union. All Rights Reserved. Seismic structure beneath the contiguous U.S. was imaged with multimode receiver function stacking and inversion of Rayleigh wave dispersion and ellipticity measurements. Crust thickness and elevation are weakly correlated across the contiguous U.S., but the correlation is ∼3-4 times greater for separate areas east and west of the Rocky Mountain Front (RMF). Greater lower crustal shear velocities east of the RMF, particularly in low-elevation areas with thick crust, are consistent with deep crustal density as the primary cause of the contrasting crust thickness versus elevation trends. Separate eastern and western trends are best fit by Airy isostasy models that assume lower crust to uppermost mantle density increases of 0.18 g/cm3 and 0.40 g/cm3, respectively. The former value is near the minimum that is plausible for felsic lower crust. Location of the transition at the RMF suggests that Laramide to post-Laramide processes reduced western U.S. lower crustal density.
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Benchmarking and Performance Improvement at Rocky Flats Environmental Technology Site
Energy Technology Data Exchange (ETDEWEB)
Elliott, C. [Kaiser-Hill Co., LLC, Golden, CO (United States)], Doyle, D. [USDOE Rocky Flats Office, Golden, CO (United States)], Featherman, W.D. [Project Performance Corp., Sterline, VA (United States)
1997-12-31
The Rocky Flats Environmental Technology Site (RFETS) has initiated a major work process improvement campaign using the tools of formalized benchmarking and streamlining. This paper provides insights into some of the process improvement activities performed at Rocky Flats from November 1995 through December 1996. It reviews the background, motivation, methodology, results, and lessons learned from this ongoing effort. The paper also presents important gains realized through process analysis and improvement including significant cost savings, productivity improvements, and an enhanced understanding of site work processes.
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Structure Changes of Macrobenthic Community on Rocky Shores After the Hebei Spirit Oil Spill
Yun-Hwan Jung; Heung-Sik Park; Kon-Tak Yoon; Hyung-Gon Lee; Chae-Woo Ma
2013-01-01
In Korea, more than 300 oil spill accidents occur every year. Despite the frequency, only a small pool of data is available on the initial effect of oil spill on macrobenthic fauna inhabiting rocky shores. The aim of this study was to analyze the variation of macrobenthic fauna composition and community structure on rocky shores, and understand the impact of oil on rocky shore organisms after the Hebei Spirit oil spill. Field surveys were carried out in five regions dose to the wreck site in ...
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[Complications and cause of death in mexican children with rocky mountain spotted fever].
Martínez-Medina, Miguel Ángel; Rascón-Alcantar, Adela
Rocky Mountain spotted fever is a life threatening disease caused by Rickettsia rickettsia, characterized by multisystem involvement. We studied 19 dead children with Rocky Mountain spotted fever. All children who were suspected of having rickettsial infections were defined as having Rocky Mountain spotted fever by serology test and clinical features. Through the analysis of each case, we identified the clinical profile and complications associated to the death of a patient. In nine (69.2%) of 13 cases that died in the first three days of admission, the associated condition was septic shock. Others complications included respiratory distress causes by non-cardiogenic pulmonary edema, renal impairment, and multiple organ damage. The main cause of death in this study was septic shock. The fatality rate from Rocky Mountain spotted fever can be related to the severity of the infection, delay in diagnosis, and delay in initiation of antibiotic therapy. Pulmonary edema and cerebral edema can be usually precipitated by administration of excess intravenous fluids.
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Ancestrality and evolution of trait syndromes in finches (Fringillidae)
Ponge, Jean‐François; Zuccon, Dario; Elias, Marianne; Pavoine, Sandrine; Henry, Pierre‐Yves; Théry, Marc; Guilbert, Éric
2017-01-01
International audience; Species traits have been hypothesized by one of us (Ponge, 2013) to evolve in a correlated manner as species colonize stable, undisturbed habitats, shifting from “ancestral” to “derived” strategies. We predicted that generalism, r-selection, sexual monomorphism, and migration/gregariousness are the ancestral states (collectively called strategy A) and evolved correlatively toward specialism, K-selection, sexual dimorphism, and residence/territoriality as habitat stabil...
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Lack of Social Support Raises Stress Vulnerability in Rats with a History of Ancestral Stress.
Faraji, Jamshid; Soltanpour, Nabiollah; Lotfi, Hamid; Moeeini, Reza; Moharreri, Ali-Reza; Roudaki, Shabnam; Hosseini, S Abedin; Olson, David M; Abdollahi, Ali-Akbar; Soltanpour, Nasrin; Mohajerani, Majid H; Metz, Gerlinde A S
2017-07-13
Stress is a primary risk factor for psychiatric disorders. However, it is not fully understood why some stressed individuals are more vulnerable to psychiatric disorders than others. Here, we investigated whether multigenerational ancestral stress produces phenotypes that are sensitive to depression-like symptoms in rats. We also examined whether social isolation reveals potentially latent sensitivity to depression-like behaviours. F4 female rats born to a lineage of stressed mothers (F0-F3) received stress in adulthood while housed in pairs or alone. Social isolation during stress induced cognitive and psychomotor retardation only in rats exposed to ancestral stress. Social isolation also hampered the resilience of the hypothalamic-pituitary-adrenal axis to chronic stress and reduced hippocampal volume and brain-derived neurotrophic factor (BDNF) expression. Thus, synergy between social isolation and stress may unmask a latent history of ancestral stress, and raises vulnerability to mental health conditions. The findings support the notion that social support critically promotes stress coping and resilience.
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Plutonium in a grassland ecosystem. [Rocky Flats Plant
Energy Technology Data Exchange (ETDEWEB)
Little, C.A.
1976-08-01
A study was made of plutonium contamination of grassland at the Rocky Flats plant northwest of Denver, Colorado. Of interest were: the definition of major plutonium-containing ecosystem compartments; the relative amounts in those compartments; how those values related to studies done in other geographical areas; whether or not the predominant isotopes, /sup 238/Pu and /sup 239/Pu, behaved differently; and what mechanisms might have allowed for the observed patterns of contamination. Samples of soil, litter, vegetation, arthropods, and small mammals were collected for Pu analysis and mass determination from each of two macroplots. Small aliquots (5 g or less) were analyzed by a rapid liquid scintillation technique and by alpha spectrometry. Of the compartments sampled, greater than 99 percent of the total plutonium was contained in the soil and the concentrations were significantly inversely correlated with distance from the contamination source, depth of the sample, and particle size of the sieved soil samples. The soil data suggested that the distribution of contamination largely resulted from physical transport processes.
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Resurrecting ancestral genes in bacteria to interpret ancient biosignatures
Kacar, Betul; Guy, Lionel; Smith, Eric; Baross, John
2017-11-01
Two datasets, the geologic record and the genetic content of extant organisms, provide complementary insights into the history of how key molecular components have shaped or driven global environmental and macroevolutionary trends. Changes in global physico-chemical modes over time are thought to be a consistent feature of this relationship between Earth and life, as life is thought to have been optimizing protein functions for the entirety of its approximately 3.8 billion years of history on the Earth. Organismal survival depends on how well critical genetic and metabolic components can adapt to their environments, reflecting an ability to optimize efficiently to changing conditions. The geologic record provides an array of biologically independent indicators of macroscale atmospheric and oceanic composition, but provides little in the way of the exact behaviour of the molecular components that influenced the compositions of these reservoirs. By reconstructing sequences of proteins that might have been present in ancient organisms, we can downselect to a subset of possible sequences that may have been optimized to these ancient environmental conditions. How can one use modern life to reconstruct ancestral behaviours? Configurations of ancient sequences can be inferred from the diversity of extant sequences, and then resurrected in the laboratory to ascertain their biochemical attributes. One way to augment sequence-based, single-gene methods to obtain a richer and more reliable picture of the deep past, is to resurrect inferred ancestral protein sequences in living organisms, where their phenotypes can be exposed in a complex molecular-systems context, and then to link consequences of those phenotypes to biosignatures that were preserved in the independent historical repository of the geological record. As a first step beyond single-molecule reconstruction to the study of functional molecular systems, we present here the ancestral sequence reconstruction of the
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Expression, purification and crystallization of the ancestral androgen receptor-DHT complex.
Colucci, Jennifer K; Ortlund, Eric A
2013-09-01
Steroid receptors (SRs) are a closely related family of ligand-dependent nuclear receptors that mediate the transcription of genes critical for development, reproduction and immunity. SR dysregulation has been implicated in cancer, inflammatory diseases and metabolic disorders. SRs bind their cognate hormone ligand with exquisite specificity, offering a unique system to study the evolution of molecular recognition. The SR family evolved from an estrogen-sensitive ancestor and diverged to become sensitive to progestagens, corticoids and, most recently, androgens. To understand the structural mechanisms driving the evolution of androgen responsiveness, the ancestral androgen receptor (ancAR1) was crystallized in complex with 5α-dihydrotestosterone (DHT) and a fragment of the transcriptional mediator/intermediary factor 2 (Tif2). Crystals diffracted to 2.1 Å resolution and the resulting structure will permit a direct comparison with its progestagen-sensitive ancestor, ancestral steroid receptor 2 (AncSR2).
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Visual system evolution and the nature of the ancestral snake.
Simões, B F; Sampaio, F L; Jared, C; Antoniazzi, M M; Loew, E R; Bowmaker, J K; Rodriguez, A; Hart, N S; Hunt, D M; Partridge, J C; Gower, D J
2015-07-01
The dominant hypothesis for the evolutionary origin of snakes from 'lizards' (non-snake squamates) is that stem snakes acquired many snake features while passing through a profound burrowing (fossorial) phase. To investigate this, we examined the visual pigments and their encoding opsin genes in a range of squamate reptiles, focusing on fossorial lizards and snakes. We sequenced opsin transcripts isolated from retinal cDNA and used microspectrophotometry to measure directly the spectral absorbance of the photoreceptor visual pigments in a subset of samples. In snakes, but not lizards, dedicated fossoriality (as in Scolecophidia and the alethinophidian Anilius scytale) corresponds with loss of all visual opsins other than RH1 (λmax 490-497 nm); all other snakes (including less dedicated burrowers) also have functional sws1 and lws opsin genes. In contrast, the retinas of all lizards sampled, even highly fossorial amphisbaenians with reduced eyes, express functional lws, sws1, sws2 and rh1 genes, and most also express rh2 (i.e. they express all five of the visual opsin genes present in the ancestral vertebrate). Our evidence of visual pigment complements suggests that the visual system of stem snakes was partly reduced, with two (RH2 and SWS2) of the ancestral vertebrate visual pigments being eliminated, but that this did not extend to the extreme additional loss of SWS1 and LWS that subsequently occurred (probably independently) in highly fossorial extant scolecophidians and A. scytale. We therefore consider it unlikely that the ancestral snake was as fossorial as extant scolecophidians, whether or not the latter are para- or monophyletic. © 2015 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2015 European Society For Evolutionary Biology.
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Public distrust and hazard management success at the Rocky Flats nuclear weapons plant
International Nuclear Information System (INIS)
Hohenemser, C.
1987-01-01
Based on experience gained while serving a public oversight commission appointed by the governor of Colorado, hazard management at the Department of Energy's Rocky Flats nuclear weapons plant is reviewed. Specific reference is made to the plant's history of controversy, its defense-in-depth strategy of hazard control, occupational health issues, public exposure to plutonium, and the assessment of low-probability, high-consequence risks. This leads to the conclusion that Rocky flats is, by any objective standard, a hazard management success. It follows that public distrust of Rocky Flats arises as much from fear and loathing of nuclear weapons themselves as from the manufacturing process by which they are made
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International Nuclear Information System (INIS)
Hendrickson, D.W.; Biyani, R.K.; Brown, C.M.; Teter, W.L.
1995-11-01
Proposals for demonstration work under the Department of Energy's Mixed Waste Focus Area, during the 1996 through 1997 fiscal years included two applications of supercritical carbon dioxide to mixed waste pretreatment. These proposals included task RF15MW58 of Rocky Flats and task RL46MW59 of Hanford. Analysis of compatibilities in wastes and work scopes yielded an expectation of substantial collaboration between sites whereby Hanford waste streams may undergo demonstration testing at Rocky Flats, thereby eliminating the need for test facilities at Hanford. This form of collaboration is premised the continued deployment at Rocky Flats and the capability for Hanford samples to be treated at Rocky Flats. The recent creation of a thermal treatment contract for a facility near Hanford may alleviate the need to conduct organic extraction upon Rocky Flats wastes by providing a cost effective thermal treatment alternative, however, some waste streams at Hanford will continue to require organic extraction. Final site waste stream treatment locations are not within the scope of this document
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Energy Technology Data Exchange (ETDEWEB)
Hendrickson, D.W.; Biyani, R.K. [Westinghouse Hanford Co., Richland, WA (United States); Brown, C.M.; Teter, W.L. [Kaiser-Hill Co., Golden, CO (United States)
1995-11-01
Proposals for demonstration work under the Department of Energy`s Mixed Waste Focus Area, during the 1996 through 1997 fiscal years included two applications of supercritical carbon dioxide to mixed waste pretreatment. These proposals included task RF15MW58 of Rocky Flats and task RL46MW59 of Hanford. Analysis of compatibilities in wastes and work scopes yielded an expectation of substantial collaboration between sites whereby Hanford waste streams may undergo demonstration testing at Rocky Flats, thereby eliminating the need for test facilities at Hanford. This form of collaboration is premised the continued deployment at Rocky Flats and the capability for Hanford samples to be treated at Rocky Flats. The recent creation of a thermal treatment contract for a facility near Hanford may alleviate the need to conduct organic extraction upon Rocky Flats wastes by providing a cost effective thermal treatment alternative, however, some waste streams at Hanford will continue to require organic extraction. Final site waste stream treatment locations are not within the scope of this document.
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2011-02-17
... Organizations: Voluntary Delisting From Rocky Mountain Patient Safety Organization AGENCY: Agency for Healthcare... Organization: AHRQ has accepted a notification of voluntary relinquishment from Rocky Mountain Patient Safety Organization, a component entity of Colorado Hospital Association, of its status as a Patient Safety...
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Rocky Mountain spotted fever in dogs, Brazil.
Labruna, Marcelo B; Kamakura, Orson; Moraes-Filho, Jonas; Horta, Mauricio C; Pacheco, Richard C
2009-03-01
Clinical illness caused by Rickettsia rickettsii in dogs has been reported solely in the United States. We report 2 natural clinical cases of Rocky Mountain spotted fever in dogs in Brazil. Each case was confirmed by seroconversion and molecular analysis and resolved after doxycycline therapy.
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Ancestral genes can control the ability of horizontally acquired loci to confer new traits.
Directory of Open Access Journals (Sweden)
H Deborah Chen
2011-07-01
Full Text Available Horizontally acquired genes typically function as autonomous units conferring new abilities when introduced into different species. However, we reasoned that proteins preexisting in an organism might constrain the functionality of a horizontally acquired gene product if it operates on an ancestral pathway. Here, we determine how the horizontally acquired pmrD gene product activates the ancestral PmrA/PmrB two-component system in Salmonella enterica but not in the closely related bacterium Escherichia coli. The Salmonella PmrD protein binds to the phosphorylated PmrA protein (PmrA-P, protecting it from dephosphorylation by the PmrB protein. This results in transcription of PmrA-dependent genes, including those conferring polymyxin B resistance. We now report that the E. coli PmrD protein can activate the PmrA/PmrB system in Salmonella even though it cannot do it in E. coli, suggesting that these two species differ in an additional component controlling PmrA-P levels. We establish that the E. coli PmrB displays higher phosphatase activity towards PmrA-P than the Salmonella PmrB, and we identified a PmrB subdomain responsible for this property. Replacement of the E. coli pmrB gene with the Salmonella homolog was sufficient to render E. coli resistant to polymyxin B under PmrD-inducing conditions. Our findings provide a singular example whereby quantitative differences in the biochemical activities of orthologous ancestral proteins dictate the ability of a horizontally acquired gene product to confer species-specific traits. And they suggest that horizontally acquired genes can potentiate selection at ancestral loci.
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Rocky flats closure project - lessons learned in worker stakeholder engagement
International Nuclear Information System (INIS)
Sweeney, Laura; Mazur, Robert E.; Edelson, Martin
2013-01-01
The Rocky Flats Environmental Technology Site (EPA Superfund site near Denver, Colorado) produced plutonium components for nuclear weapons for the U.S. defense program. The facility shut down in 1989 and clean up began in 1992. To ensure safe remediation of inactive nuclear sites, site owners have begun to consult stakeholders more widely in recent years. The closure of Rocky Flats aimed to set the standard for stakeholder involvement in doing the work safely, complying with regulations/standards, in a cost-effective manner. We have studied, using ethnographic methods, the extent to which workers at Rocky Flats were involved in communication and decision making strategies. Our results point out that workers can have perceptions of the site remediation process that differ from management and even other workers and that a significant number of workers questioned the commitment by management to engage the worker as stakeholder. The most effective remediation efforts should involve careful consideration of the insights and observations of all workers, particularly those who face immediate and high-level health and safety risks. (authors)
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Rocky flats closure project - lessons learned in worker stakeholder engagement
Energy Technology Data Exchange (ETDEWEB)
Sweeney, Laura [Des Moines Area Community College, Ankeny, Iowa (United States); Mazur, Robert E. [Iowa State University, Ames, Iowa (United States); Edelson, Martin [Ames Laboratory-USDOE (Retired), Ames, Iowa (United States)
2013-07-01
The Rocky Flats Environmental Technology Site (EPA Superfund site near Denver, Colorado) produced plutonium components for nuclear weapons for the U.S. defense program. The facility shut down in 1989 and clean up began in 1992. To ensure safe remediation of inactive nuclear sites, site owners have begun to consult stakeholders more widely in recent years. The closure of Rocky Flats aimed to set the standard for stakeholder involvement in doing the work safely, complying with regulations/standards, in a cost-effective manner. We have studied, using ethnographic methods, the extent to which workers at Rocky Flats were involved in communication and decision making strategies. Our results point out that workers can have perceptions of the site remediation process that differ from management and even other workers and that a significant number of workers questioned the commitment by management to engage the worker as stakeholder. The most effective remediation efforts should involve careful consideration of the insights and observations of all workers, particularly those who face immediate and high-level health and safety risks. (authors)
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Plutonium contamination in soils in open space and residential areas near Rocky Flats, Colorado
International Nuclear Information System (INIS)
Litaor, M.I.
1999-01-01
Spatial analysis of the 240 Pu: 239 Pu isotopic ratio of 42 soil samples collected around Rocky Flats Plant near Golden, Colorado, was conducted to assess the effect of Rocky Flats Plant activity on the soil environment. Two probability maps that quantified the uncertainty of the spatial distribution of plutonium isotopic ratios were constructed using the sequential Gaussian simulation technique (sGs). Assuming a plutonium isotopic ratio range of 0.152 ± 0.003 to 0.169 ± 0.009 is characteristic to global fallout in Colorado, and a mean value of 0.155 is representative for the Rocky Flats Plant area, the main findings of the current work were (1) the areas northwest and southwest of Rocky Flats Plant exhibited a plutonium ratio ≥0.155, this were minimally impacted by the plant activity; (2) he study area east of Rocky Flats Plant exhibited a plutonium isotopic ratio ≤0.155, which is a definitive indicator of Rocky Flats Plant-derived plutonium; and (3) inventory calculations across the study area exhibited large standard error of estimates. These errors were originated from the high variability in plutonium activity over a small sampling scale and the uncertainty in the global fallout isotopic ratio. Using the mean simulated estimates of plutonium isotopic ratio, coupled with plutonium activity measured at 11 soil pits and additional plutonium information published elsewhere, the plutonium loading on the open space and residential areas amounted to 111.2 GBq, with a standard error of estimate of 50.8 GBq
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Energy Technology Data Exchange (ETDEWEB)
Joe M. Aldrich
2004-11-01
The Former Radiation Worker Medical Surveillance Program at Rocky Flats was conducted in Arvada, CO, by Oak Ridge Associated Universities through the Oak Ridge Institute for Science and Education under DOE Contract DE-AC05-00OR22750. Objectives of the program were to obtain information on the value of medical surveillance among at-risk former radiation workers and to provide long-term internal radiation dosimetry information to the scientific community. This program provided the former radiation workers of the Rocky Flats Environmental Technology Site (formerly Rocky Flats Plant) an opportunity to receive follow-up medical monitoring and a re-evaluation of their internal radiation dose. The former Rocky Flats radiation worker population is distinctive because it was a reasonably stable work force that received occupational exposures, at times substantial, over several decades. This report reflects the summation of health outcomes, statistical analyses, and dose assessment information on former Rocky Flats radiation workers to the date of study termination as of March 2004.
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International Nuclear Information System (INIS)
Aldrich, Joe M.
2004-01-01
The Former Radiation Worker Medical Surveillance Program at Rocky Flats was conducted in Arvada, CO, by Oak Ridge Associated Universities through the Oak Ridge Institute for Science and Education under DOE Contract DE-AC--05-00OR22750. Objectives of the program were to obtain information on the value of medical surveillance among at-risk former radiation workers and to provide long-term internal radiation dosimetry information to the scientific community. This program provided the former radiation workers of the Rocky Flats Environmental Technology Site (formerly Rocky Flats Plant) an opportunity to receive follow-up medical monitoring and a re-evaluation of their internal radiation dose. The former Rocky Flats radiation worker population is distinctive because it was a reasonably stable work force that received occupational exposures, at times substantial, over several decades. This report reflects the summation of health outcomes, statistical analyses, and dose assessment information on former Rocky Flats radiation workers to the date of study termination as of March 2004
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Residue management at Rocky Flats
International Nuclear Information System (INIS)
Olencz, J.
1995-01-01
Past plutonium production and manufacturing operations conducted at the Rocky Flats Environmental Technology Site (RFETS) produced a variety of plutonium-contaminated by-product materials. Residues are a category of these materials and were categorized as open-quotes materials in-processclose quotes to be recovered due to their inherent plutonium concentrations. In 1989 all RFETS plutonium production and manufacturing operations were curtailed. This report describes the management of plutonium bearing liquid and solid wastes
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Reconstruction of ancestral RNA sequences under multiple structural constraints
Directory of Open Access Journals (Sweden)
Olivier Tremblay-Savard
2016-11-01
Full Text Available Abstract Background Secondary structures form the scaffold of multiple sequence alignment of non-coding RNA (ncRNA families. An accurate reconstruction of ancestral ncRNAs must use this structural signal. However, the inference of ancestors of a single ncRNA family with a single consensus structure may bias the results towards sequences with high affinity to this structure, which are far from the true ancestors. Methods In this paper, we introduce achARNement, a maximum parsimony approach that, given two alignments of homologous ncRNA families with consensus secondary structures and a phylogenetic tree, simultaneously calculates ancestral RNA sequences for these two families. Results We test our methodology on simulated data sets, and show that achARNement outperforms classical maximum parsimony approaches in terms of accuracy, but also reduces by several orders of magnitude the number of candidate sequences. To conclude this study, we apply our algorithms on the Glm clan and the FinP-traJ clan from the Rfam database. Conclusions Our results show that our methods reconstruct small sets of high-quality candidate ancestors with better agreement to the two target structures than with classical approaches. Our program is freely available at: http://csb.cs.mcgill.ca/acharnement .
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Su?rez-Villota, Elkin Y.; Haro, Ronie E.; Vargas, Rodrigo A.; Gallardo, Milton H.
2016-01-01
Background The low-numbered 14-chromosome karyotype of marsupials has falsified the fusion hypothesis claiming ancestrality from a 22-chromosome karyotype. Since the 14-chromosome condition of the relict Dromiciops gliroides is reminecent of ancestrality, its interstitial traces of past putative fusions and heterochromatin banding patterns were studied and added to available marsupials? cytogenetic data. Fluorescent in situ hybridization (FISH) and self-genomic in situ hybridization (self-GIS...
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Rocky Flats Solar Evaporation Ponds RCRA hybrid-closure case study
International Nuclear Information System (INIS)
Ogg, R.T.; Everett, L.G.; Cullen, S.J.
1994-01-01
The Solar Evaporation Ponds (SEP)/Operable Unit 4 (OU 4), located at the Rocky Flats Plant (RFP) sixteen miles northwest of Denver, Colorado, is currently undergoing remediation/Resource Conservation and Recovery Act (RCRA) closure in accordance with the Rocky Flats Interagency Agreement (IAG) signed by the US Department of Energy (DOE), US Environmental Protection Agency (EPA) and Colorado Department of Health (CDH) on January 22, 1991. Based on the ''Phase 1'' (source and soils) RCRA Facility Investigation/Remedial Investigation (RFM data and interpretations), the DOE and EG and G Rocky Flats, Inc. (EG and G) have selected a permanent surface engineered/isolation barrier as the technological option for remediation of the SEP. The DOE and EG and G will utilize all natural materials to create an ''impermeable'' barrier/structure to isolate the waste being left in place from impacting human health and the environment for a minimum of 1,000 years. Their rationale for utilizing natural materials is two fold; (1) optimize long term performance of the barrier and; (2) design a structure which will be near maintenance free (passive remediation) for 1,000 years. The DOE and EG and G have taken a proactive approach in providing post closure performance assessment for this RCRA closure action. An integrated monitoring system has been designed which will include monitoring the engineered barrier, vadose zone and ground water systems. Rocky Flats will integrate instrumentation into the permanent engineered barrier which will provide early warning of potential liquid migration through the barrier and into the waste zone
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Temperature-dependent respiration-growth relations in ancestral maize cultivars
Bruce N. Smith; Jillian L. Walker; Rebekka L. Stone; Angela R. Jones; Lee D. Hansen
2001-01-01
Shoots from 4- to 6-day old seedlings of seven ancestral or old cultivars of Zea mays L. were placed in a calorimeter. Dark metabolic heat rate (q) and CO2 production rate (RCO2) were measured at nine temperatures (5, 10, 15, 20, 25, 30, 35, 40, and 45 °C). Temperature dependencies of q and RCO2 were used to model response of both growth and substrate carbon conversion...
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Butzin, Nicholas C; Lapierre, Pascal; Green, Anna G; Swithers, Kristen S; Gogarten, J Peter; Noll, Kenneth M
2013-01-01
The bacterial genomes of Thermotoga species show evidence of significant interdomain horizontal gene transfer from the Archaea. Members of this genus acquired many genes from the Thermococcales, which grow at higher temperatures than Thermotoga species. In order to study the functional history of an interdomain horizontally acquired gene we used ancestral sequence reconstruction to examine the thermal characteristics of reconstructed ancestral proteins of the Thermotoga lineage and its archaeal donors. Several ancestral sequence reconstruction methods were used to determine the possible sequences of the ancestral Thermotoga and Archaea myo-inositol-3-phosphate synthase (MIPS). These sequences were predicted to be more thermostable than the extant proteins using an established sequence composition method. We verified these computational predictions by measuring the activities and thermostabilities of purified proteins from the Thermotoga and the Thermococcales species, and eight ancestral reconstructed proteins. We found that the ancestral proteins from both the archaeal donor and the Thermotoga most recent common ancestor recipient were more thermostable than their descendants. We show that there is a correlation between the thermostability of MIPS protein and the optimal growth temperature (OGT) of its host, which suggests that the OGT of the ancestors of these species of Archaea and the Thermotoga grew at higher OGTs than their descendants.
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Directory of Open Access Journals (Sweden)
Nicholas C Butzin
Full Text Available The bacterial genomes of Thermotoga species show evidence of significant interdomain horizontal gene transfer from the Archaea. Members of this genus acquired many genes from the Thermococcales, which grow at higher temperatures than Thermotoga species. In order to study the functional history of an interdomain horizontally acquired gene we used ancestral sequence reconstruction to examine the thermal characteristics of reconstructed ancestral proteins of the Thermotoga lineage and its archaeal donors. Several ancestral sequence reconstruction methods were used to determine the possible sequences of the ancestral Thermotoga and Archaea myo-inositol-3-phosphate synthase (MIPS. These sequences were predicted to be more thermostable than the extant proteins using an established sequence composition method. We verified these computational predictions by measuring the activities and thermostabilities of purified proteins from the Thermotoga and the Thermococcales species, and eight ancestral reconstructed proteins. We found that the ancestral proteins from both the archaeal donor and the Thermotoga most recent common ancestor recipient were more thermostable than their descendants. We show that there is a correlation between the thermostability of MIPS protein and the optimal growth temperature (OGT of its host, which suggests that the OGT of the ancestors of these species of Archaea and the Thermotoga grew at higher OGTs than their descendants.
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Comparative risk analysis for the Rocky Flats Plant integrated project planning
International Nuclear Information System (INIS)
Jones, M.E.; Shain, D.I.
1994-01-01
The Rocky Flats Plant is developing, with active stakeholder a comprehensive planning strategy that will support transition of the Rocky Flats Plant from a nuclear weapons production facility to site cleanup and final disposition. Final disposition of the Rocky Flats Plant materials and contaminants requires consideration of the interrelated nature of sitewide problems, such as material movement and disposition, facility and land use endstates, costs relative risks to workers and the public, and waste disposition. Comparative Risk Analysis employs both incremental risk and cumulative risk evaluations to compare risks from postulated options or endstates. These postulated options or endstates can be various remedial alternatives, or future endstate uses of federal agency land. Currently, there does not exist any approved methodology that aggregates various incremental risk estimates. Comparative Risk Analysis has been developed to aggregate various incremental risk estimates to develop a site cumulative risk estimate. This paper discusses development of the Comparative Risk Analysis methodology, stakeholder participation and lessons learned from these challenges
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DEFF Research Database (Denmark)
Caspeta, Luis; Nielsen, Jens
2015-01-01
adaptive laboratory evolution, we previously isolated seven Saccharomyces cerevisiae strains with improved growth at 40°C. Here, we show that genetic adaptations to high temperature caused a growth trade-off at ancestral temperatures, reduced cellular functions, and improved tolerance of other stresses...... in the ancestral strain. The latter is an advantageous attribute for acquiring thermotolerance and correlates with the reduction of yeast functions associated with loss of respiration capacity. This trait caused glycerol overproduction that was associated with the growth trade-off at ancestral temperatures....... In combination with altered sterol composition of cellular membranes, glycerol overproduction was also associated with yeast osmotolerance and improved tolerance of high concentrations of glucose and ethanol. Our study shows that thermal adaptation of yeast is suitable for improving yeast resistance...
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The rocky flats controversy on radionuclide soil action levels
International Nuclear Information System (INIS)
Earle, T.C.
2004-01-01
An account of the Rocky Flats radionuclide soil action level controversy is presented as: a case study for the purpose of understanding the nature and value of stakeholder involvement in the management of radiological hazards. The report consists of three main sections. The first section outlines the Rocky Flats story, including the Cold War era, which was characterised by secrecy and distrust, the post-Cold War era, in which trust and co-operation between risk managers and the public began to develop. This contrast between these two historical periods provides the context necessary to understand the radionuclide soil action level controversy, the main events of which are described in the second section. In the final section, the Rocky Flats case is briefly discussed within the framework of a general model of stakeholder involvement and the lessons learned from the case are identified: (1) without a basis in shared values, collaborative public involvement in the management of radiological hazards is not possible; (2) given a basis in shared values, collaborative public involvement can lead to improved solutions to the management of radiological hazards; and (3) risk managers should therefore seek to understand the values of public stakeholders and to identify ways, through stakeholder involvement, that those values can be incorporated in management practice. (author)
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Masunari, Setuko; Oliveira, Edinalva; Kowalczuk, Vânia Graciele Lezan
1998-01-01
A study of the temporal distribution of the decapod populations from a rocky shore at Farol Isle, Matinhos, State of Paraná, Brazil (25o51'S e48o32'W) was carried out. The rocky shore is 13m wide when the tidal level is zero meter and about 8o inclination. In the supralittoral, the rocky basins is mostly covered by a layer of litter coming from the terrestrial environment. In the midlittoral and upper infralittoral, the rocky slope is overlayed by boulders and pebbles and they constitute a hi...
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Comparative risk analysis for the Rocky Flats Plant integrated project planning
International Nuclear Information System (INIS)
Jones, M.E.; Shain, D.I.
1994-01-01
The Rocky Flats Plant is developing, with active stakeholder participation, a comprehensive planning strategy that will support transition of the Rocky Flats Plant from a nuclear weapons production facility to site cleanup and final disposition. Consideration of the interrelated nature of sitewide problems, such as material movement and disposition, facility and land use endstates, costs, relative risks to workers and the public, and waste disposition are all needed. Comparative Risk Analysis employs both incremental risk and cumulative risk evaluations to compare risks from postulated options or endstates and is an analytical tool for the Rocky Flats Plant Integrated Project Planning which can assist a decision-maker in evaluating relative risks among proposed remediation activity. However, risks from all of the remediation activities, decontamination and decommissioning activities, and normal ongoing operations are imposed upon the Rocky Flats workers, the surrounding public, and the environment. Comparative Risk Analysis will provide risk information, both human health and ecological, to aid in reducing unnecessary resource and monetary expenditures by focusing these resources on the largest risks first. Comparative Risk Analysis has been developed to aggregate various incremental risk estimates to develop a site cumulative risk estimate. The Comparative Risk Analysis methodology Group, consisting of community stakeholders, was established. Early stakeholder involvement in the risk analysis methodology development provides an opportunity for stakeholders to influence the risk information delivered to a decision-maker. This paper discusses development of the Comparative Risk Analysis methodology, stakeholder participation and lessons learned from these challenges
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Reconstruction of ancestral RNA sequences under multiple structural constraints
Tremblay-Savard, Olivier; Reinharz, Vladimir; Waldisp?hl, J?r?me
2016-01-01
Background Secondary structures form the scaffold of multiple sequence alignment of non-coding RNA (ncRNA) families. An accurate reconstruction of ancestral ncRNAs must use this structural signal. However, the inference of ancestors of a single ncRNA family with a single consensus structure may bias the results towards sequences with high affinity to this structure, which are far from the true ancestors. Methods In this paper, we introduce achARNement, a maximum parsimony approach that, given...
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Schopp, Pascal; Müller, Dominik; Technow, Frank; Melchinger, Albrecht E
2017-01-01
Synthetics play an important role in quantitative genetic research and plant breeding, but few studies have investigated the application of genomic prediction (GP) to these populations. Synthetics are generated by intermating a small number of parents ([Formula: see text] and thereby possess unique genetic properties, which make them especially suited for systematic investigations of factors contributing to the accuracy of GP. We generated synthetics in silico from [Formula: see text]2 to 32 maize (Zea mays L.) lines taken from an ancestral population with either short- or long-range linkage disequilibrium (LD). In eight scenarios differing in relatedness of the training and prediction sets and in the types of data used to calculate the relationship matrix (QTL, SNPs, tag markers, and pedigree), we investigated the prediction accuracy (PA) of Genomic best linear unbiased prediction (GBLUP) and analyzed contributions from pedigree relationships captured by SNP markers, as well as from cosegregation and ancestral LD between QTL and SNPs. The effects of training set size [Formula: see text] and marker density were also studied. Sampling few parents ([Formula: see text]) generates substantial sample LD that carries over into synthetics through cosegregation of alleles at linked loci. For fixed [Formula: see text], [Formula: see text] influences PA most strongly. If the training and prediction set are related, using [Formula: see text] parents yields high PA regardless of ancestral LD because SNPs capture pedigree relationships and Mendelian sampling through cosegregation. As [Formula: see text] increases, ancestral LD contributes more information, while other factors contribute less due to lower frequencies of closely related individuals. For unrelated prediction sets, only ancestral LD contributes information and accuracies were poor and highly variable for [Formula: see text] due to large sample LD. For large [Formula: see text], achieving moderate accuracy requires
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DEFF Research Database (Denmark)
Batalha, N.M.; Borucki, W.J.; Bryson, S.T.
2011-01-01
NASA's Kepler Mission uses transit photometry to determine the frequency of Earth-size planets in or near the habitable zone of Sun-like stars. The mission reached a milestone toward meeting that goal: the discovery of its first rocky planet, Kepler-10b. Two distinct sets of transit events were...... tests on the photometric and pixel flux time series established the viability of the planet candidates triggering ground-based follow-up observations. Forty precision Doppler measurements were used to confirm that the short-period transit event is due to a planetary companion. The parent star is bright...
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Directory of Open Access Journals (Sweden)
Jun Zhang
Full Text Available Identification of a small panel of population structure informative markers can reduce genotyping cost and is useful in various applications, such as ancestry inference in association mapping, forensics and evolutionary theory in population genetics. Traditional methods to ascertain ancestral informative markers usually require the prior knowledge of individual ancestry and have difficulty for admixed populations. Recently Principal Components Analysis (PCA has been employed with success to select SNPs which are highly correlated with top significant principal components (PCs without use of individual ancestral information. The approach is also applicable to admixed populations. Here we propose a novel approach based on our recent result on summarizing population structure by graph laplacian eigenfunctions, which differs from PCA in that it is geometric and robust to outliers. Our approach also takes advantage of the priori sparseness of informative markers in the genome. Through simulation of a ring population and the real global population sample HGDP of 650K SNPs genotyped in 940 unrelated individuals, we validate the proposed algorithm at selecting most informative markers, a small fraction of which can recover the similar underlying population structure efficiently. Employing a standard Support Vector Machine (SVM to predict individuals' continental memberships on HGDP dataset of seven continents, we demonstrate that the selected SNPs by our method are more informative but less redundant than those selected by PCA. Our algorithm is a promising tool in genome-wide association studies and population genetics, facilitating the selection of structure informative markers, efficient detection of population substructure and ancestral inference.
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Evolution of sexes from an ancestral mating-type specification pathway.
Directory of Open Access Journals (Sweden)
Sa Geng
2014-07-01
Full Text Available Male and female sexes have evolved repeatedly in eukaryotes but the origins of dimorphic sexes and their relationship to mating types in unicellular species are not understood. Volvocine algae include isogamous species such as Chlamydomonas reinhardtii, with two equal-sized mating types, and oogamous multicellular species such as Volvox carteri with sperm-producing males and egg-producing females. Theoretical work predicts genetic linkage of a gamete cell-size regulatory gene(s to an ancestral mating-type locus as a possible step in the evolution of dimorphic gametes, but this idea has not been tested. Here we show that, contrary to predictions, a single conserved mating locus (MT gene in volvocine algae-MID, which encodes a RWP-RK domain transcription factor-evolved from its ancestral role in C. reinhardtii as a mating-type specifier, to become a determinant of sperm and egg development in V. carteri. Transgenic female V. carteri expressing male MID produced functional sperm packets during sexual development. Transgenic male V. carteri with RNA interference (RNAi-mediated knockdowns of VcMID produced functional eggs, or self-fertile hermaphrodites. Post-transcriptional controls were found to regulate cell-type-limited expression and nuclear localization of VcMid protein that restricted its activity to nuclei of developing male germ cells and sperm. Crosses with sex-reversed strains uncoupled sex determination from sex chromosome identity and revealed gender-specific roles for male and female mating locus genes in sexual development, gamete fitness and reproductive success. Our data show genetic continuity between the mating-type specification and sex determination pathways of volvocine algae, and reveal evidence for gender-specific adaptations in the male and female mating locus haplotypes of Volvox. These findings will enable a deeper understanding of how a master regulator of mating-type determination in an ancestral unicellular species was
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Do Père David's deer lose memories of their ancestral predators?
Directory of Open Access Journals (Sweden)
Chunwang Li
Full Text Available Whether prey retains antipredator behavior after a long period of predator relaxation is an important question in predator-prey evolution. Père David's deer have been raised in enclosures for more than 1200 years and this isolation provides an opportunity to study whether Père David's deer still respond to the cues of their ancestral predators or to novel predators. We played back the sounds of crows (familiar sound and domestic dogs (familiar non-predators, of tigers and wolves (ancestral predators, and of lions (potential naïve predator to Père David's deer in paddocks, and blank sounds to the control group, and videoed the behavior of the deer during the experiment. We also showed life-size photo models of dog, leopard, bear, tiger, wolf, and lion to the deer and video taped their responses after seeing these models. Père David's deer stared at and approached the hidden loudspeaker when they heard the roars of tiger or lion. The deer listened to tiger roars longer, approached to tiger roars more and spent more time staring at the tiger model. The stags were also found to forage less in the trials of tiger roars than that of other sound playbacks. Additionally, it took longer for the deer to restore their normal behavior after they heard tiger roars, which was longer than that after the trial of other sound playbacks. Moreover, the deer were only found to walk away after hearing the sounds of tiger and wolf. Therefore, the tiger was probably the main predator for Père David's deer in ancient time. Our study implies that Père David's deer still retain the memories of the acoustic and visual cues of their ancestral predators in spite of the long term isolation from natural habitat.
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A high resolution complex terrain dispersion study in the Rocky Flats, Colorado vicinity
International Nuclear Information System (INIS)
Poulos, G.S.; Bossert, J.E.
1992-01-01
In January/February, 1991 an intensive set of measurements was taken around Rocky Flats near Denver, CO under the auspices of the Department of Energy Atmospheric Studies over Complex Terrain (ASCOT) program. This region of the country is known as the Front Range, and is characterized by a transition from the relatively flat terrain of the Great Plains to the highly varied terrain of the Rocky Mountains. One goal of the ASCOT 1991 program was to gain insight into multi-scale meteorological interaction by observing wintertime drainage conditions at the mountain-valley-plains interface. ASCOT data included surface and upper air measurements on approximately a 50km 2 scale. Simultaneously, an SF 6 tracer release study was being conducted around Rocky Flats, a nuclear materials production facility. Detailed surface concentration measurements were completed for the SF 6 plume. This combination of meteorological and tracer concentration data provided a unique data set for comparisons of mesoscale and dispersion modeling results with observations and for evaluating our capability to predict pollutant transport. Our approach is to use the Regional Atmospheric Modeling System (RAMS) mesoscale model to simulate atmospheric conditions and the Lagrangian Particle Dispersion Model (LPDM), a component of the RAMS system, to model the dispersion of the SF 6 . We have chosen the 4--5 February, 1991 overnight period as our case study. This night was characterized by strong drainage flows from the Rocky Mountains to the west of Rocky Flats, southerly winds in a layer about lkm thick above the drainage flows, and northwesterly winds above that layer extending to the tropopause
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Limber pine health in the Canadian Rockies
Cyndi M. Smith; David Langor; Colin Myrholm; Jim Weber; Cameron Gillies; Jon Stuart-Smith
2011-01-01
Limber pine (Pinus flexilis) reaches the northern limit of its range at about 52 degrees latitude in Alberta (AB) and 51 degrees latitude in British Columbia (BC). Most populations are found on the eastern slopes of the Rocky Mountains, with a few disjunct populations west of the Continental Divide in southeastern BC.
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Public involvement and risk communiction for the Rocky Flats health studies
International Nuclear Information System (INIS)
Zoda, S.M.; Lockhart, A.J.
1993-01-01
In 1990, the State of Colorado and the U.S. Department of Energy entered into an Agreement in Principle that provides funding for state studies and monitoring of the Rocky Flats Nuclear Weapons Plant. The Colorado Department of Health initiated a two-phase study to identify releases of radioactive and other contaminants from the year 1952, when Rocky Flats opened, through 1989, and to estimate the potential offsite exposures and health effects. Because one of the main goals for the study is to answer citizen questions about past operations and impacts from the Rocky Flats Plant, the Department of Health designed an open study process featuring a multi-faceted program for public involvement and two-way communication. To provide independent scientific oversight and increase public accountability, Governor Roy Romer appointed a 12-member Health Advisory Panel that includes local and national technical experts and community members. This paper describes the study process and the public involvement and risk communication program designed to address citizen concerns, foster understanding and build credibility
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78 FR 70033 - Encana Marketing (USA) Inc. v. Rockies Express Pipeline LLC; Notice of Complaint
2013-11-22
... Marketing (USA) Inc. v. Rockies Express Pipeline LLC; Notice of Complaint Take notice that on November 15... Commission (Commission), 18 CFR 385.206, Encana Marketing (USA) Inc. (Encana Marketing or Complainant), filed... Rockies Express has unlawfully denied Encana Marketing's request to make changes to the primary delivery...
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Disposal of Rocky Flats residues as waste
International Nuclear Information System (INIS)
Dustin, D.F.; Sendelweck, V.S.
1993-01-01
Work is underway at the Rocky Flats Plant to evaluate alternatives for the removal of a large inventory of plutonium-contaminated residues from the plant. One alternative under consideration is to package the residues as transuranic wastes for ultimate shipment to the Waste Isolation Pilot Plant. Current waste acceptance criteria and transportation regulations require that approximately 1000 cubic yards of residues be repackaged to produce over 20,000 cubic yards of WIPP certified waste. The major regulatory drivers leading to this increase in waste volume are the fissile gram equivalent, surface radiation dose rate, and thermal power limits. In the interest of waste minimization, analyses have been conducted to determine, for each residue type, the controlling criterion leading to the volume increase, the impact of relaxing that criterion on subsequent waste volume, and the means by which rules changes may be implemented. The results of this study have identified the most appropriate changes to be proposed in regulatory requirements in order to minimize the costs of disposing of Rocky Flats residues as transuranic wastes
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Risk, media, and stigma at Rocky Flats
International Nuclear Information System (INIS)
Flynn, J.; Peters, E.; Mertz, C.K.; Slovic, P.
1998-01-01
Public responses to nuclear technologies are often strongly negative. Events, such as accidents or evidence of unsafe conditions at nuclear facilities, receive extensive and dramatic coverage by the news media. These news stories affect public perceptions of nuclear risks and the geographic areas near nuclear facilities. One result of these perceptions, avoidance behavior, is a form of technological stigma that leads to losses in property values near nuclear facilities. The social amplification of risk is a conceptual framework that attempts to explain how stigma is created through media transmission of information about hazardous places and public perceptions and decisions. This paper examines stigma associated with the US Department of energy's Rocky Flats facility, a major production plant in the nation's nuclear weapons complex, located near Denver, Colorado. This study, based upon newspaper analyses and a survey of Denver area residents, finds that the social amplification theory provides a reasonable framework for understanding the events and public responses that took place in regard to Rocky Flats during a 6-year period, beginning with an FBI raid of the facility in 1989
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Pollination and reproduction of an invasive plant inside and outside its ancestral range
Petanidou, Theodora; Price, Mary V.; Bronstein, Judith L.; Kantsa, Aphrodite; Tscheulin, Thomas; Kariyat, Rupesh; Krigas, Nikos; Mescher, Mark C.; De Moraes, Consuelo M.; Waser, Nickolas M.
2018-05-01
Comparing traits of invasive species within and beyond their ancestral range may improve our understanding of processes that promote aggressive spread. Solanum elaeagnifolium (silverleaf nightshade) is a noxious weed in its ancestral range in North America and is invasive on other continents. We compared investment in flowers and ovules, pollination success, and fruit and seed set in populations from Arizona, USA ("AZ") and Greece ("GR"). In both countries, the populations we sampled varied in size and types of present-day disturbance. Stature of plants increased with population size in AZ samples whereas GR plants were uniformly tall. Taller plants produced more flowers, and GR plants produced more flowers for a given stature and allocated more ovules per flower. Similar functional groups of native bees pollinated in AZ and GR populations, but visits to flowers decreased with population size and we observed no visits in the largest GR populations. As a result, plants in large GR populations were pollen-limited, and estimates of fecundity were lower on average in GR populations despite the larger allocation to flowers and ovules. These differences between plants in our AZ and GR populations suggest promising directions for further study. It would be useful to sample S. elaeagnifolium in Mediterranean climates within the ancestral range (e.g., in California, USA), to study asexual spread via rhizomes, and to use common gardens and genetic studies to explore the basis of variation in allocation patterns and of relationships between visitation and fruit set.
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Wan, Long; Tong, Jing; Zhou, Jinxing; Guo, Hongyan; Cui, Ming; Liu, Yuguo; Ning, Like; Tang, Fukai
2016-01-01
Over the past several decades, rocky desertification has led to severe ecological problems in karst areas in South China. After a rocky desertification treatment project was completed, the vegetation coverage changed greatly and, consequently, increased the ecology water consumption (approximately equal to the actual evapotranspiration) of the regional vegetation. Thus, it intensified the regional water stresses. This study explored the changes in the actual evapotranspiration (ETa) response to the vegetation coverage changes in the rocky desertification areas in South China based on the precipitation (P), potential evapotranspiration (ETp) and NDVI (the normalized difference vegetation index) datasets. The revised Bagrov model was used to simulate the actual evapotranspiration changes with the supposed increasing NDVI. The results indicated that the average NDVI value was lower when the rocky desertification was more severe. The ETa, evapotranspiration efficiency (ETa/ETp) and potential humidity (P/ETp) generally increased with the increasing NDVI. The sensitivity of the ETa response to vegetation coverage changes varied due to different precipitation conditions and different rocky desertification severities. The ETa was more sensitive under drought conditions. When a drought occurred, the ETa exhibited an average increase of 40~60 mm with the NDVI increasing of 0.1 in the rocky desertification areas. Among the 5 different severity categories of rocky desertification, the ETa values' responses to NDVI changes were less sensitive in the severe rocky desertification areas but more sensitive in the extremely and potential rocky desertification areas. For example, with the NDVI increasing of 0.025, 0.05, 0.075, and 0.1, the corresponding ETa changes increased by an average of 2.64 mm, 10.62 mm, 19.19 mm, and 27.58 mm, respectively, in severe rocky desertification areas but by 4.94 mm, 14.99 mm, 26.80, and 37.13 mm, respectively, in extremely severe rocky
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Inference of the ancestral vertebrate phenotype through vestiges of the whole-genome duplications.
Onimaru, Koh; Kuraku, Shigehiro
2018-03-16
Inferring the phenotype of the last common ancestor of living vertebrates is a challenging problem because of several unresolvable factors. They include the lack of reliable out-groups of living vertebrates, poor information about less fossilizable organs and specialized traits of phylogenetically important species, such as lampreys and hagfishes (e.g. secondary loss of vertebrae in adult hagfishes). These factors undermine the reliability of ancestral reconstruction by traditional character mapping approaches based on maximum parsimony. In this article, we formulate an approach to hypothesizing ancestral vertebrate phenotypes using information from the phylogenetic and functional properties of genes duplicated by genome expansions in early vertebrate evolution. We named the conjecture as 'chronological reconstruction of ohnolog functions (CHROF)'. This CHROF conjecture raises the possibility that the last common ancestor of living vertebrates may have had more complex traits than currently thought.
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An allele of an ancestral transcription factor dependent on a horizontally acquired gene product.
Chen, H Deborah; Jewett, Mollie W; Groisman, Eduardo A
2012-01-01
Changes in gene regulatory circuits often give rise to phenotypic differences among closely related organisms. In bacteria, these changes can result from alterations in the ancestral genome and/or be brought about by genes acquired by horizontal transfer. Here, we identify an allele of the ancestral transcription factor PmrA that requires the horizontally acquired pmrD gene product to promote gene expression. We determined that a single amino acid difference between the PmrA proteins from the human adapted Salmonella enterica serovar Paratyphi B and the broad host range S. enterica serovar Typhimurium rendered transcription of PmrA-activated genes dependent on the PmrD protein in the former but not the latter serovar. Bacteria harboring the serovar Typhimurium allele exhibited polymyxin B resistance under PmrA- or under PmrA- and PmrD-inducing conditions. By contrast, isogenic strains with the serovar Paratyphi B allele displayed PmrA-regulated polymyxin B resistance only when experiencing activating conditions for both PmrA and PmrD. We establish that the two PmrA orthologs display quantitative differences in several biochemical properties. Strains harboring the serovar Paratyphi B allele showed enhanced biofilm formation, a property that might promote serovar Paratyphi B's chronic infection of the gallbladder. Our findings illustrate how subtle differences in ancestral genes can impact the ability of horizontally acquired genes to confer new properties.
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Strategy and plan for siting and licensing a Rocky Mountain low-level radioactive waste facility
International Nuclear Information System (INIS)
Whitman, M.
1983-09-01
In 1979, the States of Nevada and Washington temporarily closed their commercial low-level radioactive waste (LLW) disposal facilities and South Carolina, the only other state hosting such a facility, restricted the amount of waste it would accept. All three states then announced that they did not intend to continue the status quo of accepting all of the country's commercial low-level radioactive waste. Faced with this situation, other states began considering alternative LLW management and disposal options. In the Rocky Mountain region, this evolved into discussions for the development of an interstate compact to manage low-level waste. Inherent in this management plan was a strategy to site and license a new LLW disposal facility for the Rocky Mountain region. The Rocky Mountain Low-Level Radioactive Waste Compact was negotiated over the course of a year, with final agreement on the language of the compact agreed to in early 1982. States eligible to join the compact are Arizona, Colorado, Nevada, New Mexico, Utah, and Wyoming. Colorado adopted the compact into law in 1982, and Nevada, New Mexico and Wyoming adopted it in 1983. Utah has joined the Northwest Compact, although it may decide to join the Rocky Mountain Compact after a new disposal facility is developed for the region. Arizona has taken no action on the Rocky Mountain Compact
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Low-level radioactive waste facility siting in the Rocky Mountain compact region
International Nuclear Information System (INIS)
Whitman, M.
1983-09-01
The puprose of the Rocky Mountain Low-Level Radioactive Waste Compact is to develop a regional management system for low-level waste (LLW) generated in the six states eligible for membership: Arizona, Colorado, Nevada, New Mexico, Utah and Wyoming. Under the terms of the compact, any party state generating at least 20% of the region's waste becomes responsible for hosting a regional LLW management facility. However, the compact prescribes no system which the host state must follow to develop a facility, but rather calls on the state to fulfill its responsibility through reliance on its own laws and regulations. Few of the Rocky Mountain compact states have legislation dealing specifically with LLW facility siting. Authority for LLW facility siting is usually obtained from radiation control statutes and solid or hazardous waste statutes. A state-by-state analysis of the siting authorities of each of the Rock Mountain compact states as they pertain to LLW disposal facility siting is presented. Siting authority for LLW disposal facilities in the Rocky Mountain compact region runs from no authority, as in Wyoming, to general statutory authority for which regulations would have to be promulgated, as in Arizona and Nevada, to more detailed siting laws, as in Colorado and New Mexico. Barring an amendment to, or different interpretation of, the Utah Hazardous Waste Facility Siting Act, none of the Rocky Mountain States' LLW facility siting authorities preempt local veto authorities
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Rocky Flats Plant Site, Golden, Colorado. Volume I. Draft environmental impact statement
International Nuclear Information System (INIS)
1977-09-01
Two previous environmental statements have been issued for the Rocky Flats Plant site. One concerned a new plutonium recovery facility (WASH-1517, USAEC, January 1972); the second concerned land acquisition (WASH-1518, USAEC, April 1972). This document responds to those who indicated concerns and also ERDA's anticipated concerns about activities associated with the Rocky Flats Plant. Most concerns focus on two points including the Plant's involvement in the production of nuclear weapons and the Plant's handling of hazardous materials, particularly the radioactive element plutonium. The production of nuclear weapons, in which the Rocky Flats Plant maintains a vital role, will probably continue for as long as the world situation suggests that this country must have a strong defense. Operations at the Rocky Flats Plant have resulted in some plutonium being released to the environment, but evidence does not indicate that the amounts involved have presented any measurable hazard to human health. Ongoing improvements to the Plant's facilities and operational procedures are intended to preclude any recurrence of past releases. Despite these improvements, some public concern has resulted from past releases and the potential adverse effects from any possible future releases. This DEIS addresses that concern. It comments on past mishaps along with their causes and effects. It discusses current operations plus related costs and benefits to the region. Various alternatives to continuing present operations are explored, and the costs and benefits of the different options are compared
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Levings, G.W.
1986-01-01
A preliminary appraisal was conducted in and near the ancestral Missouri River valley in northeastern Montana to describe the groundwater resources and to establish a data base for the area. The data base then could be used for future evaluation of possible changes in water levels or water quality. In this area, consolidated aquifers are the Upper Cretaceous Fox Hills-lower Hell Creek aquifer and the overlying Paleocene Fort Union Formation. Unconsolidated aquifers are Pleistocene terrace gravel and glacial deposits and Holocene alluvial deposits. Aquifers are recharged by precipitation, infiltration of streamflow, and possibly leakage from lakes and potholes. Groundwater moves from topographically higher areas to the ancestral valley, then along the ancestral valley to the southwest. Water is discharged from aquifers by evapotranspiration, springs and seeps, movement directly into streams and lakes, and from pumping wells. Average well yields are greatest for irrigation wells completed in outwash gravel (886 gallons/min). Eighteen wells were completed in various aquifers to monitor potential long-term changes in water levels and water quality. Measured water levels declined about 2 ft. or less during the study (1982-85). Chemical analysis of groundwater samples indicated that concentrations of some dissolved constituents exceeded U.S. Environmental Protection Agency standards for drinking water. (USGS)
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Kradin, Richard L
2012-04-01
The ancestral claims on an individual can evoke mental conflict when they involve separating from an ethnic group whose beliefs and customs are devalued by the dominant culture. However, these claims are engraved on the psyche early in development by caretakers to the level of pre-object relatedness, where contents and affect tones are implicit and may be unavailable for later psychoanalytical interventions. In addition, as the anthropologist Clifford Geertz notes, one's culture of origin precedes the development of psyche and creates its own set of claims that must be renegotiated when one encounters a different domain of cultural symbols, a confrontation that can produce psychological dissonance and self-alienation. In this paper, three cases are examined in which mental conflicts were evoked by attempts at divesting ancestral claims in response to conscious efforts to assimilate into the dominant culture. These patients suffered from separation guilt and unstable self-esteem and reported dream imagery suggesting psychological imbalance. The requirement to carefully delineate the ancestral claims on psyche as well as those contents and affects that may not be accessible to therapeutic intervention is emphasized, and the importance of compromise and acceptance with respect to the psychological demands of the unconscious are considered. 2012, The Society of Analytical Psychology.
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Leonard, E. M.; Laabs, B. J.; Refsnider, K. A.; Plummer, M. A.; Jacobsen, R. E.; Wollenberg, J. A.
2010-12-01
Global climate model (GCM) simulations of the last glacial maximum (LGM) in the western United States predict changes in atmospheric circulation and storm tracks that would have resulted in significantly less-than-modern precipitation in the Northwest and northern Rockies, and significantly more-than-modern precipitation in the Southwest and southern Rockies. Model simulations also suggest that late Pleistocene pluvial lakes in the intermontane West may have modified local moisture regimes in areas immediately downwind. In this study, we present results of the application of a coupled energy/mass balance and glacier-flow model (Plummer and Phillips, 2003) to reconstructed paleoglaciers in Rocky Mountains of Utah, New Mexico, Colorado, and Wyoming to assess the changes from modern climate that would have been necessary to sustain each glacier in mass-balance equilibrium at its LGM extent. Results demonstrate that strong west-to-east and north-to-south gradients in LGM precipitation, relative to present, would be required if a uniform LGM temperature depression with respect to modern is assumed across the region. At an assumed 7oC temperature depression, approximately modern precipitation would have been necessary to support LGM glaciation in the Colorado Front Range, significantly less than modern precipitation to support glaciation in the Teton Range, and almost twice modern precipitation to sustain glaciers in the Wasatch and Uinta ranges of Utah and the New Mexico Sangre de Cristo Range. The observed west-to-east (Utah-to-Colorado) LGM moisture gradient is consistent with precipitation enhancement from pluvial Lake Bonneville, decreasing with distance downwind from the lake. The north-to-south (Wyoming-to-New Mexico) LGM moisture gradient is consistent with a southward LGM displacement of the mean winter storm track associated with the winter position of the Pacific Jet Stream across the western U.S. Our analysis of paleoglacier extents in the Rocky Mountain
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International Nuclear Information System (INIS)
Beem, Katherine B.; Raja, Suresh; Schwandner, Florian M.; Taylor, Courtney; Lee, Taehyoung; Sullivan, Amy P.; Carrico, Christian M.; McMeeking, Gavin R.; Day, Derek; Levin, Ezra; Hand, Jenny; Kreidenweis, Sonia M.; Schichtel, Bret; Malm, William C.; Collett, Jeffrey L.
2010-01-01
Increases in reactive nitrogen deposition are a growing concern in the U.S. Rocky Mountain west. The Rocky Mountain Airborne Nitrogen and Sulfur (RoMANS) study was designed to improve understanding of the species and pathways that contribute to nitrogen deposition in Rocky Mountain National Park (RMNP). During two 5-week field campaigns in spring and summer of 2006, the largest contributor to reactive nitrogen deposition in RMNP was found to be wet deposition of ammonium (34% spring and summer), followed by wet deposition of nitrate (24% spring, 28% summer). The third and fourth most important reactive nitrogen deposition pathways were found to be wet deposition of organic nitrogen (17%, 12%) and dry deposition of ammonia (14%, 16%), neither of which is routinely measured by air quality/deposition networks operating in the region. Total reactive nitrogen deposition during the spring campaign was determined to be 0.45 kg ha -1 and more than doubled to 0.95 kg ha -1 during the summer campaign. - The reactive nitrogen deposition budget for Rocky Mountain National Park.
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O'Neill, R J; Eldridge, M D; Toder, R; Ferguson-Smith, M A; O'Brien, P C; Graves, J A
1999-06-01
Marsupial mammals show extraordinary karyotype stability, with 2n = 14 considered ancestral. However, macropodid marsupials (kangaroos and wallabies) exhibit a considerable variety of karyotypes, with a hypothesised ancestral karyotype of 2n = 22. Speciation and karyotypic diversity in rock wallabies (Petrogale) is exceptional. We used cross species chromosome painting to examine the chromosome evolution between the tammar wallaby (2n = 16) and three 2n = 22 rock wallaby species groups with the putative ancestral karyotype. Hybridization of chromosome paints prepared from flow sorted chromosomes of the tammar wallaby to Petrogale spp., showed that this ancestral karyotype is largely conserved among 2n = 22 rock wallaby species, and confirmed the identity of ancestral chromosomes which fused to produce the bi-armed chromosomes of the 2n = 16 tammar wallaby. These results illustrate the fission-fusion process of karyotype evolution characteristic of the kangaroo group.
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Restoring rocky intertidal communities: Lessons from a benthic macroalgal ecosystem engineer
International Nuclear Information System (INIS)
Bellgrove, Alecia; McKenzie, Prudence F.; Cameron, Hayley; Pocklington, Jacqueline B.
2017-01-01
As coastal population growth increases globally, effective waste management practices are required to protect biodiversity. Water authorities are under increasing pressure to reduce the impact of sewage effluent discharged into the coastal environment and restore disturbed ecosystems. We review the role of benthic macroalgae as ecosystem engineers and focus particularly on the temperate Australasian fucoid Hormosira banksii as a case study for rocky intertidal restoration efforts. Research focussing on the roles of ecosystem engineers is lagging behind restoration research of ecosystem engineers. As such, management decisions are being made without a sound understanding of the ecology of ecosystem engineers. For successful restoration of rocky intertidal shores it is important that we assess the thresholds of engineering traits (discussed herein) and the environmental conditions under which they are important. - Highlights: • Fucoid algae can be important ecosystem engineers in rocky reef ecosystems • Sewage-effluent disposal negatively affects fucoids and associated communities • Restoring fucoid populations can improve biodiversity of degraded systems • Clarifying the roles of fucoids in ecosystem function can improve restoration efforts • Thresholds of engineering traits and associated environmental conditions important
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Facility overview for commercial application of selected Rocky Flats facilities
International Nuclear Information System (INIS)
1996-11-01
The purpose of this Facility Overview is to support the Rocky Flats Local Impacts Initiative's Request for Interest, to solicit interest from commercial corporations for utilizing buildings 865 and 883, and the equipment contained within each building, for a commercial venture. In the following sections, this document describes the Rocky Flats Site, the buildings available for lease, the equipment within these buildings, the site services available to a tenant, the human resources available to support operations in buildings 865 and 883, and the environmental condition of the buildings and property. In addition, a brief description is provided of the work performed to date to explore the potential products that might be manufactured in Buildings 865 and 883, and the markets for these products
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Vascular plant flora of the alpine zone in the southern Rocky Mountains, U.S.A
James F. Fowler; B. E. Nelson; Ronald L. Hartman
2014-01-01
Field detection of changes in occurrence, distribution, or abundance of alpine plant species is predicated on knowledge of which species are in specific locations. The alpine zone of the Southern Rocky Mountain Region has been systematically inventoried by the staff and floristics graduate students from the Rocky Mountain Herbarium over the last 27 years. It is...
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Why sulfonamides are contraindicated in Rocky Mountain spotted fever
Ren, Vicky; Hsu, Sylvia
2014-01-01
Sulfonamide antibiotics are not effective for the treatment of Rocky Mountain spotted fever (RMSF). Patients suspected of having RMSF based on history and physical exam should be treated with doxycycline and not a sulfonamide to avoid increased morbidity and mortality.
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Why sulfonamides are contraindicated in Rocky Mountain spotted fever.
Ren, Vicky; Hsu, Sylvia
2014-02-18
Sulfonamide antibiotics are not effective for the treatment of Rocky Mountain spotted fever (RMSF). Patients suspected of having RMSF based on history and physical exam should be treated with doxycycline and not a sulfonamide to avoid increased morbidity and mortality.
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Synthetic Minor NSR Permit: Tesoro Logistics-Rockies - Ponderosa Compressor Station
This page contains documents related to the synthetic minor NSR permit for the Tesoro Logistics-Rockies Ponderosa Compressor Station, located on the Uintah and Ouray Indian Reservation in Uintah County, UT.
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Inferring ancestral distribution area and survival vegetation of Caragana (Fabaceae) in Tertiary
Mingli Zhang; Juanjuan Xue; Qiang Zhang; Stewart C. Sanderson
2015-01-01
Caragana, a leguminous genus mainly restricted to temperate Central and East Asia, occurs in arid, semiarid, and humid belts, and has forest, grassland, and desert ecotypes. Based on the previous molecular phylogenetic tree and dating, biogeographical analyses of extant species area and ecotype were conducted by means of four ancestral optimization approaches: S-DIVA,...
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Directory of Open Access Journals (Sweden)
Katherine Belov
2006-03-01
Full Text Available The first sequenced marsupial genome promises to reveal unparalleled insights into mammalian evolution. We have used the Monodelphis domestica (gray short-tailed opossum sequence to construct the first map of a marsupial major histocompatibility complex (MHC. The MHC is the most gene-dense region of the mammalian genome and is critical to immunity and reproductive success. The marsupial MHC bridges the phylogenetic gap between the complex MHC of eutherian mammals and the minimal essential MHC of birds. Here we show that the opossum MHC is gene dense and complex, as in humans, but shares more organizational features with non-mammals. The Class I genes have amplified within the Class II region, resulting in a unique Class I/II region. We present a model of the organization of the MHC in ancestral mammals and its elaboration during mammalian evolution. The opossum genome, together with other extant genomes, reveals the existence of an ancestral "immune supercomplex" that contained genes of both types of natural killer receptors together with antigen processing genes and MHC genes.
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Basic TRUEX process for Rocky Flats Plant
International Nuclear Information System (INIS)
Leonard, R.A.; Chamberlain, D.B.; Dow, J.A.; Farley, S.E.; Nunez, L.; Regalbuto, M.C.; Vandegrift, G.F.
1994-08-01
The Generic TRUEX Model was used to develop a TRUEX process flowsheet for recovering the transuranics (Pu, Am) from a nitrate waste stream at Rocky Flats Plant. The process was designed so that it is relatively insensitive to changes in process feed concentrations and flow rates. Related issues are considered, including solvent losses, feed analysis requirements, safety, and interaction with an evaporator system for nitric acid recycle
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Association analysis of PRNP gene region with chronic wasting disease in Rocky Mountain elk
Directory of Open Access Journals (Sweden)
Spraker Terry R
2010-11-01
Full Text Available Abstract Background Chronic wasting disease (CWD is a transmissible spongiform encephalopathy (TSE of cervids including white-tailed (Odocoileus virginianus and mule deer (Odocoileus hemionus, Rocky Mountain elk (Cervus elaphus nelsoni, and moose (Alces alces. A leucine variant at position 132 (132L in prion protein of Rocky Mountain elk confers a long incubation time with CWD, but not complete resistance. However, variants in regulatory regions outside the open reading frame of PRNP have been associated with varying degrees of susceptibility to prion disease in other species, and some variants have been observed in similar regions of Rocky Mountain elk PRNP. Thus, additional genetic variants might provide increased protection, either alone or in combination with 132L. Findings This study provided genomic sequence of all exons for PRNP of Rocky Mountain elk. Many functional sites in and around the PRNP gene region were sequenced, and this report approximately doubled (to 75 the number of known variants in this region. A haplotype-tagging approach was used to reduce the number of genetic variants required to survey this variation in the PRNP gene region of 559 Rocky Mountain elk. Eight haplotypes were observed with frequencies over 1.0%, and one haplotype was present at 71.2% frequency, reflecting limited genetic diversity in the PRNP gene region. Conclusions The presence of 132L cut odds of CWD by more than half (Odds Ratio = 0.43; P = 0.0031, which was similar to a previous report. However after accounting for 132L, no association with CWD was found for any additional variants in the PRNP region (P > 0.05.
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Long-term effects of Exxon Valdez oiling and shoreline treatments on rocky intertidal epibiota
International Nuclear Information System (INIS)
Houghton, J.P.; Fukuyama, A.K.; Lees, D.C.; Driskell, W.B.; Shigenaka, G.; Mearns, A.J.
1993-01-01
Hot-water treatments used to remove Exxon Valdez oil from rocky beaches of Prince William Sound in 1989 were shown to have severe short-term impacts on intertidal epibenthos. Quantitative sampling was conducted from 1989 through 1993 to evaluate recovery of littoral habitats from the effects of oiling and hotwater washing. Effects of hot-water treatments applied in 1989 remained visible in intertidal assemblages through 1993. Some hot-water treated rocky shores that had been stripped of biota showed little colonization by 1991; significant differences remained between epibiota on unoiled shores and that on oiled shores that were hot-water washed. On other oiled rocky shores that were not hot-water washed, the majority of the community dominants, including rockweed, mussels, barnacles, limpets, drills, and littorines, survived the oiling; by July 1991 these shores did not differ in most respects from unoiled shores. By July 1993 hot-water-washed rocky shores had been colonized by opportunistic species as well as by most of the original biota. Algal assemblages were heavily dominated by rockweed, but red algae reminded depressed, especially at lower elevations; otherwise, few significant differences remained in 1993 between the epibiota on unoiled and hot-water-washed shores. Full recovery appears to be several years away in many areas, however
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Are palaeoscolecids ancestral ecdysozoans?
Harvey, Thomas H P; Dong, Xiping; Donoghue, Philip C J
2010-01-01
The reconstruction of ancestors is a central aim of comparative anatomy and evolutionary developmental biology, not least in attempts to understand the relationship between developmental and organismal evolution. Inferences based on living taxa can and should be tested against the fossil record, which provides an independent and direct view onto historical character combinations. Here, we consider the nature of the last common ancestor of living ecdysozoans through a detailed analysis of palaeoscolecids, an early and extinct group of introvert-bearing worms that have been proposed to be ancestral ecdysozoans. In a review of palaeoscolecid anatomy, including newly resolved details of the internal and external cuticle structure, we identify specific characters shared with various living nematoid and scalidophoran worms, but not with panarthropods. Considered within a formal cladistic context, these characters provide most overall support for a stem-priapulid affinity, meaning that palaeoscolecids are far-removed from the ecdysozoan ancestor. We conclude that previous interpretations in which palaeoscolecids occupy a deeper position in the ecdysozoan tree lack particular morphological support and rely instead on a paucity of preserved characters. This bears out a more general point that fossil taxa may appear plesiomorphic merely because they preserve only plesiomorphies, rather than the mélange of primitive and derived characters anticipated of organisms properly allocated to a position deep within animal phylogeny.
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A history of forest entomology in the Intermountain and Rocky Mountain areas, 1901 to 1982
Malcolm M. Furniss
2007-01-01
This account spans the time from A.D. Hopkins' trip to the Black Hills, SD, in 1901 to my retirement in 1982. The focus is on personnel and the work of the Division of Forest Insect Investigations, USDA, and the Forest Service experiment stations in the Rocky Mountain and Intermountain areas. Information for the Intermountain and Northern Rocky Mountain station...
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Raczniak, Gregory A.; Kato, Cecilia; Chung, Ida H.; Austin, Amy; McQuiston, Jennifer H.; Weis, Erica; Levy, Craig; Carvalho, Maria da Gloria S.; Mitchell, Audrey; Bjork, Adam; Regan, Joanna J.
2014-01-01
Rocky Mountain spotted fever, a tick-borne disease caused by Rickettsia rickettsii, is challenging to diagnose and rapidly fatal if not treated. We describe a decedent who was co-infected with group A β-hemolytic streptococcus and R. rickettsii. Fatal cases of Rocky Mountain spotted fever may be underreported because they present as difficult to diagnose co-infections. PMID:25331804
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Crawford, D H; Powell, L W; Leggett, B A; Francis, J S; Fletcher, L M; Webb, S I; Halliday, J W; Jazwinska, E C
1995-01-01
Hemochromatosis (HC) is a common inherited disorder of iron metabolism for which neither the gene nor biochemical defect have yet been identified. The aim of this study was to look for clinical evidence that the predominant ancestral haplotype in Australian patients is associated with a common mutation in the gene. We compared indices of iron metabolism and storage in three groups of HC patients categorized according to the presence of the ancestral haplotype (i.e., patients with two copies, ...
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Characterization of Most Promising Sequestration Formations in the Rocky Mountain Region (RMCCS)
Energy Technology Data Exchange (ETDEWEB)
McPherson, Brian; Matthews, Vince
2013-09-30
The primary objective of the “Characterization of Most Promising Carbon Capture and Sequestration Formations in the Central Rocky Mountain Region” project, or RMCCS project, is to characterize the storage potential of the most promising geologic sequestration formations within the southwestern U.S. and the Central Rocky Mountain region in particular. The approach included an analysis of geologic sequestration formations under the Craig Power Station in northwestern Colorado, and application or extrapolation of those local-scale results to the broader region. A ten-step protocol for geologic carbon storage site characterization was a primary outcome of this project.
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Rocky Flats Neutron Detector Testing at Valduc, France
International Nuclear Information System (INIS)
Kim, S.S.; Dulik, G.M.
2011-01-01
Recent program requirements of the US Department of Energy/NNSA have led to a need for a criticality accident alarm system to be installed at a newly activated facility. The Criticality Safety Group of the Lawrence Livermore National Laboratory (LLNL) was able to recover and store for possible future use approximately 200 neutron criticality detectors and 20 master alarm panels from the former Rocky Flats Plant in Golden, Colorado when the plant was closed. The Criticality Safety Group participated in a facility analysis and evaluation, the engineering design and review process, as well as the refurbishment, testing, and recalibration of the Rocky Flats criticality alarm system equipment to be used in the new facility. In order to demonstrate the functionality and survivability of the neutron detectors to the effects of an actual criticality accident, neutron detector testing was performed at the French CEA Valduc SILENE reactor from October 7 to October 19, 2010. The neutron detectors were exposed to three criticality events or pulses generated by the SILENE reactor. The first excursion was performed with a bare or unshielded reactor, and the second excursion was made with a lead shielded/reflected reactor, and the third excursion with a polyethylene reflected core. These tests of the Rocky Flats neutron detectors were performed as a part of the 2010 Criticality Accident Alarm System Benchmark Measurements at the SILENE Reactor. The principal investigators for this series of experiments were Thomas M. Miller and John C. Wagner of the Oak Ridge National Laboratory, with Nicolas Authier and Nathalie Baclet of CEA Valduc. Several other organizations were also represented, including the Y-12 National Security Complex, Lawrence Livermore National Laboratory, Los Alamos National Laboratory, CEA Saclay, and Babcock International Group.
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Zientek, Jillian; Dahlgren, F Scott; McQuiston, Jennifer H; Regan, Joanna
2014-02-01
Among 2012 Docstyle survey respondents, 80% identified doxycycline as the appropriate treatment for Rocky Mountain spotted fever in patients ≥ 8 years old, but only 35% correctly chose doxycycline in patients Rocky Mountain spotted fever observed nationally. Targeted education efforts are needed. Crown Copyright © 2014. Published by Mosby, Inc. All rights reserved.
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Polymer solidification of mixed wastes at the Rocky Flats Plant
International Nuclear Information System (INIS)
Faucette, A.M.; Logsdon, B.W.; Lucerna, J.J.; Yudnich, R.J.
1994-01-01
The Rocky Flats Plant is pursuing polymer solidification as a viable treatment option for several mixed waste streams that are subject to land disposal restrictions within the Resource Conservation and Recovery Act provisions. Tests completed to date using both surrogate and actual wastes indicate that polyethylene microencapsulation is a viable treatment option for several mixed wastes at the Rocky Flats Plant, including nitrate salts, sludges, and secondary wastes such as ash. Treatability studies conducted on actual salt waste demonstrated that the process is capable of producing waste forms that comply with all applicable regulatory criteria, including the Toxicity Characteristic Leaching Procedure. Tests have also been conducted to evaluate the feasibility of macroencapsulating certain debris wastes in polymers. Several methods and plastics have been tested for macroencapsulation, including post-consumer recycle and regrind polyethylene
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Quantitative respirator man-testing at Rocky Flats
Energy Technology Data Exchange (ETDEWEB)
Leigh, J. D.
1978-01-01
The dioctyl phthalate quantitative respirator man-testing method used at Rocky Flats is outlined. Using this method, 93 persons trained to use self contained breathing equipment were tested with eight respiratory protective devices. Test results obtained with the seven devices using high efficiency particulate filters are compared to the results obtained with the self contained breathing equipment. Also comparison is made for these results to test results for 1667 other employees.
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Quantitative respirator man-testing at Rocky Flats
International Nuclear Information System (INIS)
Leigh, J.D.
The dioctyl phthalate quantitative respirator man-testing method used at Rocky Flats is outlined. Using this method, 93 persons trained to use self contained breathing equipment were tested with eight respiratory protective devices. Test results obtained with the seven devices using high efficiency particulate filters are compared to the results obtained with the self contained breathing equipment. Also comparison is made for these results to test results for 1667 other employees
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[A fatal case series of Rocky Mountain spotted fever in Sonora, México].
Delgado-De la Mora, Jesús; Licona-Enríquez, Jesús David; Leyva-Gastélum, Marcia; Delgado-De la Mora, David; Rascón-Alcantar, Adela; Álvarez-Hernández, Gerardo
2018-03-15
Rocky Mountain spotted fever is a highly lethal infectious disease, particularly if specific treatment with doxycycline is given belatedly. To describe the clinical profile of fatal Rocky Mountain spotted fever cases in hospitalized patients in the state of Sonora, México. We conducted a cross-sectional study on a series of 47 deaths caused by Rickettsia rickettsii from 2013 to 2016. The diagnosis of Rocky Mountain spotted fever was confirmed in a single blood sample by polymerase chain reaction (PCR) or by a four-fold increase in immunoglobulin G measured in paired samples analyzed by indirect immunofluorescence. Clinical and laboratory characteristics were compared stratifying subjects into two groups: pediatric and adult. There were no differences in clinical characteristics between groups; petechial rash was the most frequent sign (96%), followed by headache (70%) and myalgia (67%). Although that doxycycline was administered before the fifth day from the onset of symptoms, death occurred in 55% of patients. In clinical laboratory, thrombocytopenia, and biomarkers of liver acute failure and acute kidney failure were the most frequent. Rocky Mountain spotted fever remains as one of the most lethal infectious diseases, which may be related not only to the lack of diagnostic suspicion and delayed administration of doxycycline, but to genotypic characteristics of Rickettsia rickettsii that may play a role in the variability of the fatality rate that has been reported in other geographical regions where the disease is endemic.
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Directory of Open Access Journals (Sweden)
Ross eGillette
2015-03-01
Full Text Available Exposure to the endocrine disrupting chemical vinclozolin during gestation of an F0 generation and/or chronic restraint stress during adolescence of the F3 descendants affects behavior, physiology, and gene expression in the brain. Genes related to the networks of growth factors, signaling peptides and receptors, steroid hormone receptors and enzymes, and epigenetic related factors were measured using quantitative polymerase chain reaction via Taqman low density arrays targeting 48 genes in the central amygdaloid nucleus, medial amygdaloid nucleus, medial preoptic area, lateral hypothalamus, and the ventromedial nucleus of the hypothalamus. We found that growth factors are particularly vulnerable to ancestral exposure in the central and medial amygdala; restraint stress during adolescence affected neural growth factors in the medial amygdala. Signaling peptides were affected by both ancestral exposure and stress during adolescence primarily in hypothalamic nuclei. Steroid hormone receptors and enzymes were strongly affected by restraint stress in the medial preoptic area. Epigenetic related genes were affected by stress in the ventromedial hypothalamus and by both ancestral exposure and stress during adolescence independently in the central amygdala. It is noteworthy that the lateral hypothalamus showed no effects of either manipulation. Gene expression is discussed in the context of behavioral and physiological measures previously published.
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Gillette, Ross; Miller-Crews, Isaac; Skinner, Michael K; Crews, David
2015-01-01
Exposure to the endocrine disrupting chemical vinclozolin during gestation of an F0 generation and/or chronic restraint stress during adolescence of the F3 descendants affects behavior, physiology, and gene expression in the brain. Genes related to the networks of growth factors, signaling peptides, and receptors, steroid hormone receptors and enzymes, and epigenetic related factors were measured using quantitative polymerase chain reaction via Taqman low density arrays targeting 48 genes in the central amygdaloid nucleus, medial amygdaloid nucleus, medial preoptic area (mPOA), lateral hypothalamus (LH), and the ventromedial nucleus of the hypothalamus. We found that growth factors are particularly vulnerable to ancestral exposure in the central and medial amygdala; restraint stress during adolescence affected neural growth factors in the medial amygdala. Signaling peptides were affected by both ancestral exposure and stress during adolescence primarily in hypothalamic nuclei. Steroid hormone receptors and enzymes were strongly affected by restraint stress in the mPOA. Epigenetic related genes were affected by stress in the ventromedial nucleus and by both ancestral exposure and stress during adolescence independently in the central amygdala. It is noteworthy that the LH showed no effects of either manipulation. Gene expression is discussed in the context of behavioral and physiological measures previously published.
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Rocky Flats Plant Site Environmental Report for 1992
International Nuclear Information System (INIS)
Cirrincione, D.A.; Erdmann, N.L.
1992-01-01
The Rocky Rats Plant Site Environmental Report provides summary information on the plant's environmental monitoring programs and the results recorded during 1992. The report contains a compliance summary, results of environmental monitoring and other related programs, a review of environmental remediation activities, information on external gamma radiation dose monitoring, and radiation dose estimates for the surrounding population
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Rocky Flats Plant Site Environmental Report for 1992
Energy Technology Data Exchange (ETDEWEB)
Cirrincione, D.A.; Erdmann, N.L. [eds.
1992-12-31
The Rocky Rats Plant Site Environmental Report provides summary information on the plant`s environmental monitoring programs and the results recorded during 1992. The report contains a compliance summary, results of environmental monitoring and other related programs, a review of environmental remediation activities, information on external gamma radiation dose monitoring, and radiation dose estimates for the surrounding population.
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Natural phenomena risk assessment at Rocky Flats Plant
International Nuclear Information System (INIS)
Foppe, T.L.
1985-01-01
A realistic approach is currently being used at the Rocky Flats Plant to assess the risks of natural phenomena events. The methodology addresses frequency of occurrence estimates, damage stress on the facility and vital equipment, material-at-risk, release fractions and source terms, leakpath, dispersion and dosimetric models, risk curves, and an uncertainty analysis. 28 references, 1 figure
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Erratum: Vascular epiphyte vegetation in rocky savannas of southeastern Brazil
Czech Academy of Sciences Publication Activity Database
Alves, R. J. V.; Kolbek, Jiří; Becker, J.
2009-01-01
Roč. 27, č. 4 (2009), s. 351-352 ISSN 0107-055X Institutional research plan: CEZ:AV0Z60050516 Keywords : epiphytes * Brazil * rocky savannas Subject RIV: EF - Botanics Impact factor: 0.868, year: 2009
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Jing, Yi Ran; Deng, Xiang Wen; Wei, Hui; Li, Yan Qiong; Deng, Dong Hua; Liu, Hao Jian; Xiang, Wen Hua
2017-02-01
In this paper, we took the leaves of shrubland plants in rocky desertification area in Southwestern Hunan as the research object to analyze the nitrogen (N) and phosphorus (P) stoichiometry characteristics for different functional groups and different grades of rocky desertification, i.e., light rocky desertification (LRD), moderate rocky desertification (MRD) and intense rocky desertification (IRD). The results showed that the average contents of N and P were 12.89 and 1.19 g·kg -1 , respectively, and N/P was 11.24 in common shrubland plants in the study area, which indicated that the growth of most plants were mainly limited by N. The content of N was declined in order of deciduous shrubs > evergreen shrubs > annual herbs > perennial herbs. The content of P and N/P were higher in deciduous shrubs than in perennial herbs. Significant differences were found among the main families of plants in terms of the contents of N, P and N/P in the study sites. The plants of Gramineae had the lowest contents of N and P, andtheir growth was mostly restricted by N, while Leguminosae had the highest content of N and N/P, and their productivity was majorly controlled by P. The contents of N and P in the leaves were significantly higher in dicotyledon plants and C3 plants than in monocotyledon plants and C4 plants, but the N/P was not significantly diffe-rent between these two plant categories. The nitrogen-fixing plants had higher content of N and N/P than the non-nitrogen-fixing plants, but the P content was not significantly different between these two plant groups. There were significant correlations between contents of N and P, N/P and N in all study plots. No significant correlation was found between N/P and P content in the examined rocky desertification sites, except for that in MRD. There were no significant differences of the contents of N, P and N/P under different grades of rocky desertification.
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International Nuclear Information System (INIS)
Hodgin, C.R.
1986-01-01
The Rocky Flats Plant applies atmospheric dispersion modeling as a tool for Emergency Response, Risk Assessment, and Regulatory Compliance. Extreme variations in terrain around the facility have necessitated the development of an advanced modeling approach. The Terrain-Responsive Atmospheric Code (TRAC) was developed to treat realistically the changing wind, stability, dispersion, and deposition patterns that are experienced in mountainous areas. The result is a detailed picture of dose and deposition patterns associated with postulated or actual releases. A unified approach was taken to modeling needs at Rocky Flats. This produces consistent dose projections for all applications. A Risk Assessment version of TRAC is now operational. A high-speed version of the code is being implemented for Emergency Response, and development of a regulatory version is under way. Public, scientific, and governmental acceptance of TRAC is critical to successful applications at the Rocky Flats Plant. A program of peer review and regulatory approval was initiated to provide a full outside evaluation of our techniques. Full field validation (tracer testing) is key to demonstrating reliability of the TRAC model. A validation study was planned for implementation beginning in early CY-1986. The necessary funding ($500,000) is being sought. Although the TRAC model development and approval program was developed for site-specific needs at the Rocky Flats Plant, potential exists for wider application within the Department of Energy (DOE). The TRAC model can be easily applied at other sites in complex terrain. A coordinated approach to model validation throughout the Albquerque Operations Office (AL) or DOE complexes could prove more cost effective than site-by-site evaluations. Finally, the model approval procedure developed jointly by Rocky Flats and the Environmental Protection Agency (EPA) is general and could be applied to other models or as the basis for a DOE-wide program
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Adult Onset Still's Disease and Rocky Mountain Spotted Fever
Directory of Open Access Journals (Sweden)
Paul Persad
2010-01-01
Full Text Available Adult Still's Disease was first described in 1971 by Bywaters in fourteen adult female patients who presented with symptoms indistinguishable from that of classic childhood Still's Disease (Bywaters, 1971. George Still in 1896 first recognized this triad of quotidian (daily fevers, evanescent rash, and arthritis in children with what later became known as juvenile inflammatory arthritis (Still, 1990. Adult Onset Still's Disease (AOSD is an inflammatory condition of unknown etiology characterized by an evanescent rash, quotidian fevers, and arthralgias. Numerous infectious agents have been associated with its presentation. This case is to our knowledge the first presentation of AOSD in the setting of Rocky Mountain Spotted Fever. Although numerous infectious agents have been suggested, the etiology of this disorder remains elusive. Nevertheless, infection may in fact play a role in triggering the onset of symptoms in those with this disorder. Our case presentation is, to our knowledge, the first case of Adult Onset Still's Disease associated with Rocky Mountain spotted fever (RMSF.
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Perianth evolution in Ranunculaceae: are petals ancestral in the family?
Nadot S.; Sauquet H.; Damerval C.; Jabbour F.; Domenech B.
2016-01-01
Progress has been made recently towards the elucidation of phylogenetic relationships among subfamilies and tribes of the Ranunculaceae – the most recent hypothesis was published in 2016 by our team. Although relationships among the 10 tribes of the subfamily Ranunculoideae remain incompletely supported, this hypothesis provides an interesting framework to address the key issue of the ancestral vs. derived nature of a differentiated perianth within the family, and at the level of Ranunculales...
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Thermal Structure and Mantle Dynamics of Rocky Exoplanets
Wagner, F. W.; Tosi, N.; Hussmann, H.; Sohl, F.
2011-12-01
The confirmed detections of CoRoT-7b and Kepler-10b reveal that rocky exoplanets exist. Moreover, recent theoretical studies suggest that small planets beyond the Solar System are indeed common and many of them will be discovered by increasingly precise observational surveys in the years ahead. The knowledge about the interior structure and thermal state of exoplanet interiors provides crucial theoretical input not only for classification and characterization of individual planetary bodies, but also to better understand the origin and evolution of the Solar System and the Earth in general. These developments and considerations have motivated us to address several questions concerning thermal structure and interior dynamics of terrestrial exoplanets. In the present study, depth-dependent structural models of solid exoplanet interiors have been constructed in conjunction with a mixing length approach to calculate self-consistently the radial distribution of temperature and heat flux. Furthermore, 2-D convection simulations using the compressible anelastic approximation have been carried through to examine the effect of thermodynamic quantities (e.g., thermal expansivity) on mantle convection pattern within rocky planets more massive than the Earth. In comparison to parameterized convection models, our calculated results predict generally hotter planetary interiors, which are mainly attributed to a viscosity-regulating feedback mechanism involving temperature and pressure. We find that density and thermal conductivity increase with depth by a factor of two to three, however, thermal expansivity decreases by more than an order of magnitude across the mantle for planets as massive as CoRoT-7b or Kepler-10b. The specific heat capacity is observed to stay almost constant over an extended region of the lower mantle. The planform of mantle convection is strongly modified in the presence of depth-dependent thermodynamic quantities with hot upwellings (plumes) rising across
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Directory of Open Access Journals (Sweden)
Maria Carmen Cenit
Full Text Available CD5 plays a crucial role in autoimmunity and is a well-established genetic risk factor of developing RA. Recently, evidence of positive selection has been provided for the CD5 Pro224-Val471 haplotype in East Asian populations. The aim of the present work was to further analyze the functional relevance of non-synonymous CD5 polymorphisms conforming the ancestral and the newly derived haplotypes (Pro224-Ala471 and Pro224-Val471, respectively as well as to investigate the potential role of CD5 on the development of SLE and/or SLE nephritis.The CD5 SNPs rs2241002 (C/T; Pro224Leu and rs2229177 (C/T; Ala471Val were genotyped using TaqMan allelic discrimination assays in a total of 1,324 controls and 681 SLE patients of Spanish origin. In vitro analysis of CD3-mediated T cell proliferative and cytokine response profiles of healthy volunteers homozygous for the above mentioned CD5 haplotypes were also analyzed.T-cell proliferation and cytokine release were significantly increased showing a bias towards to a Th2 profile after CD3 cross-linking of peripheral mononuclear cells from healthy individuals homozygous for the ancestral Pro224-Ala471 (CC haplotype, compared to the more recently derived Pro224-Val471 (CT. The same allelic combination was statistically associated with Lupus nephritis.The ancestral Ala471 CD5 allele confers lymphocyte hyper-responsiveness to TCR/CD3 cross-linking and is associated with nephritis in SLE patients.
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Rocky flats community relations open-quotes coming out of the darkclose quotes
International Nuclear Information System (INIS)
Lockhart, F.R.
1991-01-01
Community relations is becoming an increasingly prominent aspect of the environmental restoration business. Historically the DOE has been closed to public scrutiny, dating back to the origins of the weapons complex in the Manhattan Project. Rocky Flats community relations can be viewed as having its painful start on June 6, 1989, when over fifty FBI agents entered Rocky Flats to gather information on alleged operational and procedural violations of environmental law. The Plutonium Recovery Modification Project (PRMP) was the first initiative to hold public meetings and provide for real dialogue in May 1990. Building on this start, the last year has seen a phenomenal growth of Rocky Flats community relations activities, now averaging over one public forum of some kind per week. We believe the effort has been very successful in building understanding and credibility within the local community. Although community relations is not a panacea, neither is it an ogre. Community relations for environmental restoration is mandated by law, and for good management is a necessary part of the DOE for the 1990's and beyond. Properly utilized, it can augment an ongoing environmental program and help smooth the road to success
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Bat population monitoring and conservation at the Rocky Mountain Arsenal NWR
Department of the Interior — A study of the bat populations at Rocky Mountain Arsenal National Wildlife Refuge (RMA) was conducted from 1997–1998, which provided basic population and contaminant...
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Adsorption study for uranium in Rocky Flats groundwater
International Nuclear Information System (INIS)
Laul, J.C.; Rupert, M.C.; Harris, M.J.; Duran, A.
1995-01-01
Six adsorbents were studied to determine their effectiveness in removing uranium in Rocky Flats groundwater. The bench column and batch (Kd) tests showed that uranium can be removed (>99.9%) by four adsorbents. Bone Charcoal (R1O22); F-1 Alumina (granular activated alumina); BIOFIX (immobilized biological agent); SOPBPLUS (mixed metal oxide); Filtrasorb 300 (granular activated carbon); and Zeolite (clinoptilolite)
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DEFF Research Database (Denmark)
Mailund, Thomas; Dutheil, Julien; Hobolth, Asger
2011-01-01
event has occurred to split them apart. The size of these segments of constant divergence depends on the recombination rate, but also on the speciation time, the effective population size of the ancestral population, as well as demographic effects and selection. Thus, inference of these parameters may......, and the ancestral effective population size. The model is efficient enough to allow inference on whole-genome data sets. We first investigate the power and consistency of the model with coalescent simulations and then apply it to the whole-genome sequences of the two orangutan sub-species, Bornean (P. p. pygmaeus......) and Sumatran (P. p. abelii) orangutans from the Orangutan Genome Project. We estimate the speciation time between the two sub-species to be thousand years ago and the effective population size of the ancestral orangutan species to be , consistent with recent results based on smaller data sets. We also report...
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Directory of Open Access Journals (Sweden)
Silvana Cristina Pereira Muniz de SOUZA
2011-06-01
Southwest of São Paulo state, a region where remnants of Cerrado and Atlantic Forest occur. Aiming to characterize and classify that vegetation, monthly visits were done between August 2008 and February 2010 for the collecting of botanical material. The species list obtained was compared with those of rocky grasslands and high-altitude grasslands. Comparisons were made through cluster analysis, TWINSPAN and NMS. We found 135 species, 48 families and 108 genera. The richest families were Fabaceae, Asteraceae, Bignoniaceae, Myrtaceae, Melastomataceae, Poaceae, Apocynaceae, Sapindaceae and Orchidaceae. The cluster analyses with the distribution of richness among families data suggested a greater floristic affinity between the rocky outcrop vegetation studied and rocky grasslands. For the species composition data the different linkage methods grouped the study area sometimes with high altitude grasslands, sometimes with rocky grasslands. The NMS highlighted the continuous character of the floristic variation, but also showed a greater similarity between the study area and the rocky grasslands. The TWINSPAN reinforced this hypothesis and pointed out the family Fabaceae and the species Miconia albicans (Sw. Steud. and Periandra mediterranea (Vell. Taub as indicators of rocky grasslands. The soil type, formed from sandstone rocks, is the most plausible determinant factor for the floristic relations found.
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Energy Technology Data Exchange (ETDEWEB)
NONE
1995-06-01
The Department of Energy (DOE) has prepared an environmental assessment (EA), DOE/EA -- 1060, for the consolidation, processing, and interim storage of Category I and II special nuclear material (SNM) in Building 371 at the Rocky Flats Environmental Technology Site (hereinafter referred to as Rocky Flats or Site), Golden, Colorado. The scope of the EA included alternatives for interim storage including the no action alternative, the construction of a new facility for interim storage at Rocky Flats, and shipment to other DOE facilities for interim storage.
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International Nuclear Information System (INIS)
1995-06-01
The Department of Energy (DOE) has prepared an environmental assessment (EA), DOE/EA -- 1060, for the consolidation, processing, and interim storage of Category I and II special nuclear material (SNM) in Building 371 at the Rocky Flats Environmental Technology Site (hereinafter referred to as Rocky Flats or Site), Golden, Colorado. The scope of the EA included alternatives for interim storage including the no action alternative, the construction of a new facility for interim storage at Rocky Flats, and shipment to other DOE facilities for interim storage
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Rocky Mountain spotted fever in the United States, 1997-2002.
Chapman, Alice S; Murphy, Staci M; Demma, Linda J; Holman, Robert C; Curns, Aaron T; McQuiston, Jennifer H; Krebs, John W; Swerdlow, David L
2006-01-01
Rocky Mountain spotted fever (RMSF) is the most commonly reported fatal tick-borne disease in the United States. During 1997-2002, 3,649 cases of RMSF were reported to the Centers for Disease Control and Prevention via the National Electronic Telecommunications System for Surveillance; 2,589 case report forms, providing supplemental information, were also submitted. The average annual RMSF incidence during 1997-2002 was 2.2 cases/million persons. The annual incidence increased during 1997-2002 to a rate of 3.8 cases/million persons in 2002. The incidence was lowest among persons aged<5 and 10-29 years, and highest among adults aged 60-69 years. The overall case-fatality rate was 1.4%; the rate peaked in 1998 at 2.9% and declined to 0.7% in 2001 and 2002. Children<5 years of age had a case-fatality rate (5%) that was significantly greater than the rates for age groups<60 years of age, except for that for 40-49 years of age. Continued national surveillance is needed to assess the effectiveness of prevention efforts and early treatment in decreasing severe morbidity and mortality associated with RMSF.
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International Nuclear Information System (INIS)
Gelles, C. M.; Sheppard, F. R.
2002-01-01
This paper details the development of the Rocky Flats Integrated Closure Project Baseline - an innovative project management effort undertaken to ensure proactive management of the Rocky Flats Closure Contract in support of the Department's goal for achieving the safe closure of the Rocky Flats Environmental Technology Site (RFETS) in December 2006. The accelerated closure of RFETS is one of the most prominent projects within the Department of Energy (DOE) Environmental Management program. As the first major former weapons plant to be remediated and closed, it is a first-of-kind effort requiring the resolution of multiple complex technical and institutional challenges. Most significantly, the closure of RFETS is dependent upon the shipment of all special nuclear material and wastes to other DOE sites. The Department is actively working to strengthen project management across programs, and there is increasing external interest in this progress. The development of the Rocky Flats Integrated Closure Project Baseline represents a groundbreaking and cooperative effort to formalize the management of such a complex project across multiple sites and organizations. It is original in both scope and process, however it provides a useful precedent for the other ongoing project management efforts within the Environmental Management program
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Directory of Open Access Journals (Sweden)
Daniel E Adkins
Full Text Available Only a subset of patients will typically respond to any given prescribed drug. The time it takes clinicians to declare a treatment ineffective leaves the patient in an impaired state and at unnecessary risk for adverse drug effects. Thus, diagnostic tests robustly predicting the most effective and safe medication for each patient prior to starting pharmacotherapy would have tremendous clinical value. In this article, we evaluated the use of genetic markers to estimate ancestry as a predictive component of such diagnostic tests. We first estimated each patient's unique mosaic of ancestral backgrounds using genome-wide SNP data collected in the Clinical Antipsychotic Trials of Intervention Effectiveness (CATIE (n = 765 and the Sequenced Treatment Alternatives to Relieve Depression (STAR*D (n = 1892. Next, we performed multiple regression analyses to estimate the predictive power of these ancestral dimensions. For 136/89 treatment-outcome combinations tested in CATIE/STAR*D, results indicated 1.67/1.84 times higher median test statistics than expected under the null hypothesis assuming no predictive power (p<0.01, both samples. Thus, ancestry showed robust and pervasive correlations with drug efficacy and side effects in both CATIE and STAR*D. Comparison of the marginal predictive power of MDS ancestral dimensions and self-reported race indicated significant improvements to model fit with the inclusion of MDS dimensions, but mixed evidence for self-reported race. Knowledge of each patient's unique mosaic of ancestral backgrounds provides a potent immediate starting point for developing algorithms identifying the most effective and safe medication for a wide variety of drug-treatment response combinations. As relatively few new psychiatric drugs are currently under development, such personalized medicine offers a promising approach toward optimizing pharmacotherapy for psychiatric conditions.
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Language Shift and Maintenance in Multilingual Mauritius: The Case of Indian Ancestral Languages
Bissoonauth, Anu
2011-01-01
This paper reports on a research study conducted in Mauritius between June and July 2009. The aim of this research was to investigate the use of Indian ancestral languages in the domestic domain by the younger generations. The data were collected in the field by means of a questionnaire and interviews from a quota sample of secondary school…
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SITE Technology Capsule. Demonstration of Rocky Mountain Remediation Services Soil Amendment
This report briefly summarizes the Rocky Mountain Remediation Services treatment technology demonstration of a soil amendment process for lead contaminated soil at Roseville, OH. The evaluation included leaching, bioavailability, geotechnical, and geochemical methods.
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Microwave solidification development for Rocky Flats waste
Energy Technology Data Exchange (ETDEWEB)
Dixon, D.; Erle, R.; Eschen, V. [and others
1994-04-01
The Microwave Engineering Team at the Rocky Flats Plant has developed a production-scale system for the treatment of hazardous, radioactive, and mixed wastes using microwave energy. The system produces a vitreous final form which meets the acceptance criteria for shipment and disposal. The technology also has potential for application on various other waste streams from the public and private sectors. Technology transfer opportunities are being identified and pursued for commercialization of the microwave solidification technology.
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Microwave solidification development for Rocky Flats waste
International Nuclear Information System (INIS)
Dixon, D.; Erle, R.; Eschen, V.
1994-04-01
The Microwave Engineering Team at the Rocky Flats Plant has developed a production-scale system for the treatment of hazardous, radioactive, and mixed wastes using microwave energy. The system produces a vitreous final form which meets the acceptance criteria for shipment and disposal. The technology also has potential for application on various other waste streams from the public and private sectors. Technology transfer opportunities are being identified and pursued for commercialization of the microwave solidification technology
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Rocky Mountain Research Station invasive species visionary white paper
D. E. Pearson; M. Kim; J. Butler
2011-01-01
Invasive species represent one of the single greatest threats to natural ecosystems and the services they provide. Effectively addressing the invasive species problem requires management that is based on sound research. We provide an overview of recent and ongoing invasive species research conducted by Rocky Mountain Research Station scientists in the Intermountain...
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Implementing DOE guidance for hazards assessments at Rocky Flats Plant
International Nuclear Information System (INIS)
Zimmerman, G.A.
1993-01-01
Hazards Assessments are performed for a variety of activities and facilities at Rocky Flats Plant. Prior to 1991, there was no guidance for performing Hazards Assessments. Each organization that performed Hazards Assessments used its own methodology with no attempt at standardization. In 1991, DOE published guidelines for the performance of Hazards Assessments for Emergency Planning (DOE-EPG-5500.1, ''Guidance for a Hazards Assessment Methodology''). Subsequently, in 1992, DOE published a standard for the performance of Hazards Assessments (DOE-STD-1027-92, ''Hazard Categorization and Accident Analysis, Techniques for Compliance with DOE Order 5480.23, Nuclear Safety Analysis Reports''). Although these documents are a step in the direction of standardization, there remains a great deal of interpretation and subjective implementation in the performance of Hazards Assessments. Rocky Flats Plant has initiated efforts to develop a uniform and standard process to be used for Hazards Assessments
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Actinide solution processing at the Rocky Flats Environmental Technology Site
International Nuclear Information System (INIS)
1995-04-01
The Department of Energy (DOE) has prepared an Environmental Assessment (EA), DOE/EA-1039, for radioactive solution removal and processing at Rocky Flats Environmental Technology Site, Golden, Colorado. The proposal for solution removal and processing is in response to independent safety assessments and an agreement with the State of Colorado to remove mixed residues at Rocky Flats and reduce the risk of future accidents. Monthly public meetings were held during the scoping and preparation of the EA. The scope of the EA included evaluations of alternative methods and locations of solution processing. A comment period from February 20, 1995 through March 21, 1995 was provided to the public and the State of Colorado to offer written comment on the EA. Comments were received from the State of Colorado and the U.S. Environmental Protection Agency. A response to the agency comments is included in the Final EA
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Energy Technology Data Exchange (ETDEWEB)
Rapacz, J.; Hasler-Rapacz, J.O. (Univ. of Wisconsin, Madison (United States)); Chen, L.; Wu, Mingjiuan; Schumaker, V.N. (Univ. of California, Los Angeles (United States)); Butler-Brunner, E.; Butler, R. (Swiss Red Cross Blood Transfusion Service, Bern (Switzerland))
1991-02-15
The probable ancestral haplotype for human apolipoprotein B (apoB) has been identified through immunological analysis of chimpanzee and gorilla serum and sequence analysis of their DNA. Moreover, the frequency of this ancestral apoB haplotype among different human populations provides strong support for the African origin of Homo sapiens sapiens and their subsequent migration from Africa to Europe and to the Pacific. The approach used here for the identification of the ancestral human apoB haplotype is likely to be applicable to many other genes.
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International Nuclear Information System (INIS)
Rapacz, J.; Hasler-Rapacz, J.O.; Chen, L.; Wu, Mingjiuan; Schumaker, V.N.; Butler-Brunner, E.; Butler, R.
1991-01-01
The probable ancestral haplotype for human apolipoprotein B (apoB) has been identified through immunological analysis of chimpanzee and gorilla serum and sequence analysis of their DNA. Moreover, the frequency of this ancestral apoB haplotype among different human populations provides strong support for the African origin of Homo sapiens sapiens and their subsequent migration from Africa to Europe and to the Pacific. The approach used here for the identification of the ancestral human apoB haplotype is likely to be applicable to many other genes
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Suárez-Villota, Elkin Y; Haro, Ronie E; Vargas, Rodrigo A; Gallardo, Milton H
2016-01-01
The low-numbered 14-chromosome karyotype of marsupials has falsified the fusion hypothesis claiming ancestrality from a 22-chromosome karyotype. Since the 14-chromosome condition of the relict Dromiciops gliroides is reminecent of ancestrality, its interstitial traces of past putative fusions and heterochromatin banding patterns were studied and added to available marsupials' cytogenetic data. Fluorescent in situ hybridization (FISH) and self-genomic in situ hybridization (self-GISH) were used to detect telomeric and repetitive sequences, respectively. These were complemented with C-, fluorescent banding, and centromere immunodetection over mitotic spreads. The presence of interstitial telomeric sequences (ITS) and diploid numbers were reconstructed and mapped onto the marsupial phylogenetic tree. No interstitial, fluorescent signals, but clearly stained telomeric regions were detected by FISH and self-GISH. Heterochromatin distribution was sparse in the telomeric/subtelomeric regions of large submetacentric chromosomes. Large AT-rich blocks were detected in the long arm of four submetacentrics and CG-rich block in the telomeric regions of all chromosomes. The ancestral reconstructions both ITS presence and diploid numbers suggested that ITS are unrelated to fusion events. Although the lack of interstitial signals in D. gliroides' karyotype does not prove absence of past fusions, our data suggests its non-rearranged plesiomorphic condition.
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Directory of Open Access Journals (Sweden)
Daniel Magee
2017-02-01
Full Text Available Ancestral state reconstructions in Bayesian phylogeography of virus pandemics have been improved by utilizing a Bayesian stochastic search variable selection (BSSVS framework. Recently, this framework has been extended to model the transition rate matrix between discrete states as a generalized linear model (GLM of genetic, geographic, demographic, and environmental predictors of interest to the virus and incorporating BSSVS to estimate the posterior inclusion probabilities of each predictor. Although the latter appears to enhance the biological validity of ancestral state reconstruction, there has yet to be a comparison of phylogenies created by the two methods. In this paper, we compare these two methods, while also using a primitive method without BSSVS, and highlight the differences in phylogenies created by each. We test six coalescent priors and six random sequence samples of H3N2 influenza during the 2014-15 flu season in the U.S. We show that the GLMs yield significantly greater root state posterior probabilities than the two alternative methods under five of the six priors, and significantly greater Kullback-Leibler divergence values than the two alternative methods under all priors. Furthermore, the GLMs strongly implicate temperature and precipitation as driving forces of this flu season and nearly unanimously identified a single root state, which exhibits the most tropical climate during a typical flu season in the U.S. The GLM, however, appears to be highly susceptible to sampling bias compared with the other methods, which casts doubt on whether its reconstructions should be favored over those created by alternate methods. We report that a BSSVS approach with a Poisson prior demonstrates less bias toward sample size under certain conditions than the GLMs or primitive models, and believe that the connection between reconstruction method and sampling bias warrants further investigation.
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Fire, fuels, and restoration of ponderosa pine-Douglas-fir forests in the Rocky Mountains, USA
Baker, W. L.; Veblen, T. T.; Sherriff, R. L.
2007-01-01
Forest restoration in ponderosa pine and mixed ponderosa pine–Douglas fir forests in the US Rocky Mountains has been highly influenced by a historical model of frequent, low-severity surface fires developed for the ponderosa pine forests of the Southwestern USA. A restoration model, based on this low-severity fire model, focuses on thinning and prescribed burning to restore historical forest structure. However, in the US Rocky Mountains, research on fire history and forest structure, and earl...
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Portugal, Adriana Brizon; Carvalho, Fabrício Lopes; Soares, Marcelo de Oliveira; Horta, Paulo Antunes; de Castro Nunes, José Marcos
2017-09-01
The structure of marine macroalgal communities and morpho-functional groups were investigated in a poorly characterized region on the Tropical Southwestern Atlantic coast, Brazil. The survey was conducted at six rocky shores located on the mainland and on coastal islands distributed inside a marine protected area (MPA) and outside the MPA (near a densely populated area). We hypothesized that tropical rocky shores inside the MPA and islands have higher species richness, diversity, and evenness of marine macroalgae. Results confirmed that species richness, diversity and evenness were significantly higher inside the MPA than in rocky shores outside the MPA. Only species richness was higher on islands than on the mainland. The results suggest that human impacts could lead to a competitive advantage and dominance in the articulated calcareous morphotype, resulting in community differences and lower benthic biodiversity in tropical ecosystems near urbanized sites. Copyright © 2017 Elsevier Ltd. All rights reserved.
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NPDES Permit for Rocky Mountain Arsenal Recycled Water Pipeline in Colorado
Under NPDES permit CO-0035009, the U.S. Department of Interior's Fish and Wildlife Service is authorized to discharge from the Rocky Mountain Arsenal recycled water pipeline to Lower Derby Lake in Adams County, Colo.
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Aquatic Resources of Rocky Mountain Arsenal Adams County, Colorado
1989-09-01
Consequently, temperatures rise and oxygen levels fall. Primary producers in these stretches shift from periphyton to phytoplankton (suspended algae ...trees and have rocky substrates. Primary production in these cold- water and coolwater reaches is generally limited to periphyton (attached algae ...Adams County. Biotic components investigated included phytoplankton , zooplankton, aquatic macrophytes, benthic macroinvertebrates, fish eggs and
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Analysis on the reconstruction accuracy of the Fitch method for inferring ancestral states
Directory of Open Access Journals (Sweden)
Grünewald Stefan
2011-01-01
Full Text Available Abstract Background As one of the most widely used parsimony methods for ancestral reconstruction, the Fitch method minimizes the total number of hypothetical substitutions along all branches of a tree to explain the evolution of a character. Due to the extensive usage of this method, it has become a scientific endeavor in recent years to study the reconstruction accuracies of the Fitch method. However, most studies are restricted to 2-state evolutionary models and a study for higher-state models is needed since DNA sequences take the format of 4-state series and protein sequences even have 20 states. Results In this paper, the ambiguous and unambiguous reconstruction accuracy of the Fitch method are studied for N-state evolutionary models. Given an arbitrary phylogenetic tree, a recurrence system is first presented to calculate iteratively the two accuracies. As complete binary tree and comb-shaped tree are the two extremal evolutionary tree topologies according to balance, we focus on the reconstruction accuracies on these two topologies and analyze their asymptotic properties. Then, 1000 Yule trees with 1024 leaves are generated and analyzed to simulate real evolutionary scenarios. It is known that more taxa not necessarily increase the reconstruction accuracies under 2-state models. The result under N-state models is also tested. Conclusions In a large tree with many leaves, the reconstruction accuracies of using all taxa are sometimes less than those of using a leaf subset under N-state models. For complete binary trees, there always exists an equilibrium interval [a, b] of conservation probability, in which the limiting ambiguous reconstruction accuracy equals to the probability of randomly picking a state. The value b decreases with the increase of the number of states, and it seems to converge. When the conservation probability is greater than b, the reconstruction accuracies of the Fitch method increase rapidly. The reconstruction
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Validation of KENO-based criticality calculations at Rocky Flats
International Nuclear Information System (INIS)
Felsher, P.D.; McKamy, J.N.; Monahan, S.P.
1992-01-01
In the absence of experimental data, it is necessary to rely on computer-based computational methods in evaluating the criticality condition of a nuclear system. The validity of the computer codes is established in a two-part procedure as outlined in ANSI/ANS 8.1. The first step, usually the responsibility of the code developer, involves verification that the algorithmic structure of the code is performing the intended mathematical operations correctly. The second step involves an assessment of the code's ability to realistically portray the governing physical processes in question. This is accomplished by determining the code's bias, or systematic error, through a comparison of computational results to accepted values obtained experimentally. In this paper, the authors discuss the validation process for KENO and the Hansen-Roach cross sections in use at EG and G Rocky Flats. The validation process at Rocky Flats consists of both global and local techniques. The global validation resulted in a maximum k eff limit of 0.95 for the limiting-accident scanarios of a criticality evaluation
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Palaeohistological Evidence for Ancestral High Metabolic Rate in Archosaurs.
Legendre, Lucas J; Guénard, Guillaume; Botha-Brink, Jennifer; Cubo, Jorge
2016-11-01
Metabolic heat production in archosaurs has played an important role in their evolutionary radiation during the Mesozoic, and their ancestral metabolic condition has long been a matter of debate in systematics and palaeontology. The study of fossil bone histology provides crucial information on bone growth rate, which has been used to indirectly investigate the evolution of thermometabolism in archosaurs. However, no quantitative estimation of metabolic rate has ever been performed on fossils using bone histological features. Moreover, to date, no inference model has included phylogenetic information in the form of predictive variables. Here we performed statistical predictive modeling using the new method of phylogenetic eigenvector maps on a set of bone histological features for a sample of extant and extinct vertebrates, to estimate metabolic rates of fossil archosauromorphs. This modeling procedure serves as a case study for eigenvector-based predictive modeling in a phylogenetic context, as well as an investigation of the poorly known evolutionary patterns of metabolic rate in archosaurs. Our results show that Mesozoic theropod dinosaurs exhibit metabolic rates very close to those found in modern birds, that archosaurs share a higher ancestral metabolic rate than that of extant ectotherms, and that this derived high metabolic rate was acquired at a much more inclusive level of the phylogenetic tree, among non-archosaurian archosauromorphs. These results also highlight the difficulties of assigning a given heat production strategy (i.e., endothermy, ectothermy) to an estimated metabolic rate value, and confirm findings of previous studies that the definition of the endotherm/ectotherm dichotomy may be ambiguous. © The Author(s) 2016. Published by Oxford University Press, on behalf of the Society of Systematic Biologists. All rights reserved. For Permissions, please email: journals.permissions@oup.com.
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Mikheyev, Alexander; Emborski, Carmen
2018-01-01
Ancestral exposures can influence phenotypic expression in subsequent generations, which influence diverse biological processes ranging from phenotypic plasticity to obesity. Currently, most transgenerational studies work under the assumption of transgenerational response stability and reproducibility through time and across exposure differences, relying on short-term (i.e. 2-3 generations) single-exposure experiments. Yet, little evidence exists in the literature to validate this assumption,...
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Environment, safety and Health Progress Assessment of the Rocky Flats Plant
International Nuclear Information System (INIS)
1993-05-01
This report documents the result of the US Department of Energy's (DOE) Environment, Safety and Health (ES ampersand H) Progress Assessment of the DOE Rocky Flats Plant (RFP) in Golden, Colorado. The assessment, which was conducted during the period of May 17 through May 28, 1993, included a selective review of the ES ampersand H management systems and programs of the responsible DOE Headquarters Program Offices (Defense Programs (DP) and Environmental Restoration and Waste Management (EM)), the DOE Rocky Flats Office (RFO), and the site contractor, EG ampersand G Rocky Flats, Inc. (EG ampersand G). Despite the near constant state of flux under which RFP has been required to operate, the Progress Assessment Team has concluded that significant progress has been made in correcting the deficiencies identified in the 1989 Assessment and in responding responsibly to regulations, and DOE directives and guidance that have been issued since that time. The Team concluded that the improvements have been concentrated in the activities associated with plutonium facilities and in regulatory driven programs. Much remains to be done with respect to implementing on a sitewide basis those management systems that anchor an organization's pursuit of continuous ES ampersand H improvement. Furthermore the Team concluded that the pace of improvement has been constrained by a combination of factors that have limited the site's ability to manage change in the pursuit of sitewide ES ampersand H excellence
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Long, Jian; Liao, Hong-Kai; Li, Juan; Chen, Cai-Yun
2012-06-01
Redundancy analysis (RDA) was employed to reveal the relationships between soil and rocky desertification through vegetation investigation and analysis of soil samples collected in typical karst mountain area of southwest Guizhou Province. The results showed that except TP, TK and ACa, all other variables including SOC, TN, MBC, ROC, DOC, available nutrients and basal respiration showed significant downward trends during the rocky desertification process. RDA results showed significant correlations between different types of desertification and soil variables, described as non-degraded > potential desertification > light desertification > moderate desertification > severe desertification. Moreover, RDA showed that using SOC, TN, AN, and BD as soil indicators, 74.4% of the variance information on soil and rocky desertification could be explained. Furthermore, the results of correlation analysis showed that soil variables were significantly affected by surface vegetation. Considering the ecological function of the aboveground vegetation and the soil quality, Zanthoxylum would be a good choice for restoration of local vegetation in karst mountain area.
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International Nuclear Information System (INIS)
Porter, Ellen; Johnson, Susan
2007-01-01
Concern over impacts of atmospheric nitrogen deposition to ecosystems in Rocky Mountain National Park, Colorado, has prompted the National Park Service, the State of Colorado Department of Public Health and Environment, the Environmental Protection Agency, and interested stakeholders to collaborate in the Rocky Mountain National Park Initiative, a process to address these impacts. The development of a nitrogen critical load for park aquatic resources has provided the basis for a deposition goal to achieve resource protection, and parties to the Initiative are now discussing strategies to meet that goal by reducing air pollutant emissions that contribute to nitrogen deposition in the Park. Issues being considered include the types and locations of emissions to be reduced, the timeline for emission reductions, and the impact of emission reductions from programs already in place. These strategies may serve as templates for addressing ecosystem impacts from deposition in other national parks. - A collaborative approach between scientists and policymakers is described for addressing nitrogen deposition effects to Rocky Mountain National Park, USA
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Taino and African maternal heritage in the Greater Antilles.
Bukhari, Areej; Luis, Javier Rodriguez; Alfonso-Sanchez, Miguel A; Garcia-Bertrand, Ralph; Herrera, Rene J
2017-12-30
Notwithstanding the general interest and the geopolitical importance of the island countries in the Greater Antilles, little is known about the specific ancestral Native American and African populations that settled them. In an effort to alleviate this lacuna of information on the genetic constituents of the Greater Antilles, we comprehensively compared the mtDNA compositions of Cuba, Dominican Republic, Haiti, Jamaica and Puerto Rico. To accomplish this, the mtDNA HVRI and HVRII regions, as well as coding diagnostic sites, were assessed in the Haitian general population and compared to data from reference populations. The Taino maternal DNA is prominent in the ex-Spanish colonies (61.3%-22.0%) while it is basically non-existent in the ex-French and ex-English colonies of Haiti (0.0%) and Jamaica (0.5%), respectively. The most abundant Native American mtDNA haplogroups in the Greater Antilles are A2, B2 and C1. The African mtDNA component is almost fixed in Haiti (98.2%) and Jamaica (98.5%), and the frequencies of specific African haplogroups vary considerably among the five island nations. The strong persistence of Taino mtDNA in the ex-Spanish colonies (and especially in Puerto Rico), and its absence in the French and English excolonies is likely the result of different social norms regarding mixed marriages with Taino women during the early years after the first contact with Europeans. In addition, this article reports on the results of an integrative approach based on mtDNA analysis and demographic data that tests the hypothesis of a southward shift in raiding zones along the African west coast during the period encompassing the Transatlantic Slave Trade. Copyright © 2017 Elsevier B.V. All rights reserved.
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Restoring rocky intertidal communities: Lessons from a benthic macroalgal ecosystem engineer.
Bellgrove, Alecia; McKenzie, Prudence F; Cameron, Hayley; Pocklington, Jacqueline B
2017-04-15
As coastal population growth increases globally, effective waste management practices are required to protect biodiversity. Water authorities are under increasing pressure to reduce the impact of sewage effluent discharged into the coastal environment and restore disturbed ecosystems. We review the role of benthic macroalgae as ecosystem engineers and focus particularly on the temperate Australasian fucoid Hormosira banksii as a case study for rocky intertidal restoration efforts. Research focussing on the roles of ecosystem engineers is lagging behind restoration research of ecosystem engineers. As such, management decisions are being made without a sound understanding of the ecology of ecosystem engineers. For successful restoration of rocky intertidal shores it is important that we assess the thresholds of engineering traits (discussed herein) and the environmental conditions under which they are important. Copyright © 2017 Elsevier Ltd. All rights reserved.
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Directory of Open Access Journals (Sweden)
José Gatti
2008-04-01
Full Text Available This essay calls for a reassessment of Carmen Miranda's work in Hollywood. Her singing and dancing can reveal unexpected ethnic and cultural alignments. The focus here is on the costumes she designed for Springtime in the Rockies, a Fox musical in which Brazilian as well as Native American cultural references are made explicit in Miranda's performance. This essay calls for a reassessment of Carmen Miranda's work in Hollywood. Her singing and dancing can reveal unexpected ethnic and cultural alignments. The focus here is on the costumes she designed for Springtime in the Rockies, a Fox musical in which Brazilian as well as Native American cultural references are made explicit in Miranda's performance.
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Mapping critical loads of nitrogen deposition for aquatic ecosystems in the Rocky Mountains, USA
International Nuclear Information System (INIS)
Nanus, Leora; Clow, David W.; Saros, Jasmine E.; Stephens, Verlin C.; Campbell, Donald H.
2012-01-01
Spatially explicit estimates of critical loads of nitrogen (N) deposition (CL Ndep ) for nutrient enrichment in aquatic ecosystems were developed for the Rocky Mountains, USA, using a geostatistical approach. The lowest CL Ndep estimates ( −1 yr −1 ) occurred in high-elevation basins with steep slopes, sparse vegetation, and abundance of exposed bedrock and talus. These areas often correspond with areas of high N deposition (>3 kg N ha −1 yr −1 ), resulting in CL Ndep exceedances ≥1.5 ± 1 kg N ha −1 yr −1 . CL Ndep and CL Ndep exceedances exhibit substantial spatial variability related to basin characteristics and are highly sensitive to the NO 3 − threshold at which ecological effects are thought to occur. Based on an NO 3 − threshold of 0.5 μmol L −1 , N deposition exceeds CL Ndep in 21 ± 8% of the study area; thus, broad areas of the Rocky Mountains may be impacted by excess N deposition, with greatest impacts at high elevations. - Highlights: ► Critical loads maps for nutrient enrichment effects of nitrogen deposition. ► Critical load estimates show spatial variability related to basin characteristics. ► Critical loads are sensitive to the nitrate threshold value for ecological effects. ► Broad areas of the Rocky Mountains may be impacted by excess nitrogen deposition. - Critical loads maps for nutrient enrichment effects of nitrogen deposition show that broad areas of the Rocky Mountains may be impacted by excess nitrogen deposition.
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The mammary gland-specific marsupial ELP and eutherian CTI share a common ancestral gene.
Pharo, Elizabeth A; De Leo, Alison A; Renfree, Marilyn B; Thomson, Peter C; Lefèvre, Christophe M; Nicholas, Kevin R
2012-06-08
The marsupial early lactation protein (ELP) gene is expressed in the mammary gland and the protein is secreted into milk during early lactation (Phase 2A). Mature ELP shares approximately 55.4% similarity with the colostrum-specific bovine colostrum trypsin inhibitor (CTI) protein. Although ELP and CTI both have a single bovine pancreatic trypsin inhibitor (BPTI)-Kunitz domain and are secreted only during the early lactation phases, their evolutionary history is yet to be investigated. Tammar ELP was isolated from a genomic library and the fat-tailed dunnart and Southern koala ELP genes cloned from genomic DNA. The tammar ELP gene was expressed only in the mammary gland during late pregnancy (Phase 1) and early lactation (Phase 2A). The opossum and fat-tailed dunnart ELP and cow CTI transcripts were cloned from RNA isolated from the mammary gland and dog CTI from cells in colostrum. The putative mature ELP and CTI peptides shared 44.6%-62.2% similarity. In silico analyses identified the ELP and CTI genes in the other species examined and provided compelling evidence that they evolved from a common ancestral gene. In addition, whilst the eutherian CTI gene was conserved in the Laurasiatherian orders Carnivora and Cetartiodactyla, it had become a pseudogene in others. These data suggest that bovine CTI may be the ancestral gene of the Artiodactyla-specific, rapidly evolving chromosome 13 pancreatic trypsin inhibitor (PTI), spleen trypsin inhibitor (STI) and the five placenta-specific trophoblast Kunitz domain protein (TKDP1-5) genes. Marsupial ELP and eutherian CTI evolved from an ancestral therian mammal gene before the divergence of marsupials and eutherians between 130 and 160 million years ago. The retention of the ELP gene in marsupials suggests that this early lactation-specific milk protein may have an important role in the immunologically naïve young of these species.
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Feucht, D. W.; Sheehan, A. F.; Bedrosian, P. A.
2017-12-01
We present an electrical resistivity model of the crust and upper mantle from two-dimensional (2-D) anisotropic inversion of magnetotelluric data collected along a 450 km transect of the Rio Grande rift, southern Rocky Mountains, and High Plains in Colorado, USA. Our model provides a window into the modern-day lithosphere beneath the Rocky Mountain Front to depths in excess of 150 km. Two key features of the 2-D resistivity model are (1) a broad zone ( 200 km wide) of enhanced electrical conductivity (minerals, with maximum hydration occurring beneath the Rocky Mountain Front. This lithospheric "hydration front" has implications for the tectonic evolution of the continental interior and the mechanisms by which water infiltrates the lithosphere.
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A fatal urban case of rocky mountain spotted fever presenting an eschar in San Jose, Costa Rica.
Argüello, Ana Patricia; Hun, Laya; Rivera, Patricia; Taylor, Lizeth
2012-08-01
This study reports the first urban human case of Rocky Mountain spotted fever caused by Rickettsia rickettsii, in Costa Rica. An 8-year-old female who died at the National Children's Hospital 4 days after her admission, and an important and significant observation was the presence of an "eschar" (tache noire), which is typical in some rickettsial infections but not frequent in Rocky Mountain spotted fever cases.
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Raczniak, Gregory A; Kato, Cecilia; Chung, Ida H; Austin, Amy; McQuiston, Jennifer H; Weis, Erica; Levy, Craig; Carvalho, Maria da Gloria S; Mitchell, Audrey; Bjork, Adam; Regan, Joanna J
2014-12-01
Rocky Mountain spotted fever, a tick-borne disease caused by Rickettsia rickettsii, is challenging to diagnose and rapidly fatal if not treated. We describe a decedent who was co-infected with group A β-hemolytic streptococcus and R. rickettsii. Fatal cases of Rocky Mountain spotted fever may be underreported because they present as difficult to diagnose co-infections. © The American Society of Tropical Medicine and Hygiene.
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A phylogenetic Kalman filter for ancestral trait reconstruction using molecular data.
Lartillot, Nicolas
2014-02-15
Correlation between life history or ecological traits and genomic features such as nucleotide or amino acid composition can be used for reconstructing the evolutionary history of the traits of interest along phylogenies. Thus far, however, such ancestral reconstructions have been done using simple linear regression approaches that do not account for phylogenetic inertia. These reconstructions could instead be seen as a genuine comparative regression problem, such as formalized by classical generalized least-square comparative methods, in which the trait of interest and the molecular predictor are represented as correlated Brownian characters coevolving along the phylogeny. Here, a Bayesian sampler is introduced, representing an alternative and more efficient algorithmic solution to this comparative regression problem, compared with currently existing generalized least-square approaches. Technically, ancestral trait reconstruction based on a molecular predictor is shown to be formally equivalent to a phylogenetic Kalman filter problem, for which backward and forward recursions are developed and implemented in the context of a Markov chain Monte Carlo sampler. The comparative regression method results in more accurate reconstructions and a more faithful representation of uncertainty, compared with simple linear regression. Application to the reconstruction of the evolution of optimal growth temperature in Archaea, using GC composition in ribosomal RNA stems and amino acid composition of a sample of protein-coding genes, confirms previous findings, in particular, pointing to a hyperthermophilic ancestor for the kingdom. The program is freely available at www.phylobayes.org.
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Reseeding of mussels on denuded rocky shores: preliminary studies ...
African Journals Online (AJOL)
A method is developed to establish clumps of mussels Perna perna in denuded areas on high-energy rocky shores on the south-east coast of South Africa. A total of 20 small (20–30 mm total length) mussels is placed under a 30 cm half-section of perforated PVC drainage pipe bolted to the rock surface. The pipe is left in ...
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Some aspects of organic and inorganic particulate transport at Rocky Flats. Final report
International Nuclear Information System (INIS)
Nichols, H.
Findings from the summer 1975 sampling program and the conclusions from the 1975-1976 winter sampling program are summarized. Large radionuclide particles were not found attached to pollen. Sampling the airborne pollen throughout the Rocky Flats area demonstrated that the Rocky Flats air samplers were deficient in their abilities to properly collect large lightweight pollen grains. This may not have serious consequences for the undetected transport of radionuclides by pollen, however, it has implications of sampling inefficiency in some particulate size ranges, and implies that if radionuclides are carried at times by larger particles, then the standard Rocky Flats air samplers are not sampling these materials efficiently. Some initial findings suggested that soil samples from downwind areas associated with winter snow accumulation had abnormally high fissile particle accumulations, and this suggested the need to sample these sites in winter. Areas of preferred particle accumulation such as snow banks had higher concentrations of radionuclide particles than surrounding areas which are more windswept. Any soil sampling program at Rocky Flats which seeks to monitor background radionuclide levels and movement of fissile particles across the site should take account of these topographically and wind-controlled accumulation areas, and not rely solely on a grid pattern of sampling. The snow samples contained radionuclide material in substantial quantities. In terms of fissile particulates smaller than 0.5 microns the snow banks three miles east of the plant site contained as much or more radionuclides than sites close to the Hot Spot contaminated area. The snow samples immediately east of the Hot Spot contained many more large particles (>0.5 m), as did soil samples from the upwind site next to the plant fence. The Hot Spot is clearly implicated again as the source of these materials
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Litigation Technical Support and Services, Rocky Mountain Arsenal
1989-05-01
34 d V) W C > - d) 4- -~ 0 - - .4 ..- di L *..L 3~1 3-~ v mi a- a t - --- w- Vdi 4 - ý 0 -4 0 m~ -j m0 m’ .- us 0 Ill i to -v .4 I 4 1 t A ~ 3Ul t -4...2060. Marlow, D. J. 1979g, November 8. Pest control report, October 1979. Rocky Mountain Arsenal. Microfilm RMA182, Franes 2048 -2053 Marlow, D. J
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Progress towards a lightning ignition model for the Northern Rockies
Paul Sopko; Don Latham
2010-01-01
We are in the process of constructing a lightning ignition model specific to the Northern Rockies using fire occurrence, lightning strike, ecoregion, and historical weather, NFDRS (National Fire Danger Rating System), lightning efficiency and lightning "possibility" data. Daily grids for each of these categories were reconstructed for the 2003 fire season (...
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Energy Technology Data Exchange (ETDEWEB)
Wayland, M.; Crosley, R. [Environmental Canada, Saskatoon, SK (Canada)
2006-05-15
We determined levels of Se, As, Cd, Pb, and Zn in aquatic insects at coal mine-impacted and reference sites in streams in the Rocky Mountain foothills of west central Alberta from 2001-2003. Selenium levels were greater at coal mine-impacted sites than at reference sites in caddisflies but not in mayflies or stoneflies. Arsenic levels were greater at coal mine-impacted sites than at reference sites in caddisflies and stoneflies but not in mayflies. Zn levels were higher at coal mine-impacted sites than at reference sites in all three groups of insects. At coal mine-impacted sites, Se levels in mayflies and caddisflies were greater than those in stoneflies while at reference sites mayflies contained greater concentrations of Se than either caddisflies or stoneflies. Arsenic levels in mayflies were greater than those in caddisflies at reference and coal mine-impacted sites and were greater than those in stoneflies at reference sites. At both types of sites Cd differed amongst insect taxa in the order of mayflies < caddisflies < stoneflies. The same was true of Zn at coal mine-affected sites. At reference sites, stoneflies had greater concentrations of Zn than both mayflies and caddisflies. At both types of sites, Pb levels were greater in mayflies and caddisflies than they were in stoneflies. Of the five trace elements considered in this study, only Se was sufficiently elevated in aquatic invertebrates to be of potential concern for consumers such as fish and aquatic birds. Such was the case at both coal mine-impacted and reference sites.
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Faria,R. G.; Araujo,A. F. B.
2004-01-01
We studied the ecology of Tropidurus itambere and T. oreadicus that occur syntopically in rocky habitats of Cerrado vegetation in central Brazil during the dry season (April to September 2000). The two species are ecologically similar, but somewhat differentiated in vertical microhabitat use. The two species preferred rocky surface microhabitat. Both species demonstrated a unimodal activity pattern, with a peak between 10 and 15 h. Their diets were similar in composition and prey size. The mo...
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Leonard, E. M.; Laabs, B. J.; Plummer, M. A.; Huss, E.; Spiess, V. M.; Mackall, B. T.; Jacobsen, R. E.; Quirk, B.
2012-12-01
Climate conditions at the time of the local Last Glacial Maximum (LGM) in the US Rocky Mountains were assessed using a 2-d coupled glacier energy/mass-balance and ice-flow model (Plummer and Phillips, 2003). The model was employed to understand the conditions that would be necessary to sustain valley glaciers and small mountain icecaps at their maximum extents in eight areas distributed along the crest of the range from northern New Mexico (35.8oN) to northern Montana (48.6oN). For each setting, model experiments yield a set of temperature and precipitation combinations that may have accompanied the local LGM. If the results of global and regional climate models are used to constrain temperature depression estimates from our model experiments, the following precipitation pattern emerges for the local LGM. In the northern Rocky Mountains in Montana and northern Wyoming, model results suggest a strong reduction in precipitation of 50% or more. In the central Rocky Mountains of southern Wyoming and Colorado, precipitation appears to have been 50-90% of modern. By contrast, precipitation appears to have been strongly enhanced in the southern Rocky Mountains of New Mexico. These results are broadly consistent with a pattern of precipitation observed in global and regional climate simulations of the LGM in the western U.S., in which precipitation was reduced in the northern Rocky Mountains but increased in the southern Rocky Mountains. This pattern may reflect a southward displacement of mean position the Pacific Jet Stream in western North America during and possibly following the LGM.
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Jonathan D. Coop; Anna W. Schoettle
2009-01-01
Rocky Mountain bristlecone pine (Pinus aristata) and limber pine (Pinus flexilis) are important highelevation pines of the southern Rockies that are forecast to decline due to the recent spread of white pine blister rust (Cronartium ribicola) into this region. Proactive management strategies to promote the evolution of rust resistance and maintain ecosystem function...
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Outbreak of Rocky Mountain spotted fever in Córdoba, Colombia.
Hidalgo, Marylin; Miranda, Jorge; Heredia, Damaris; Zambrano, Pilar; Vesga, Juan Fernando; Lizarazo, Diana; Mattar, Salim; Valbuena, Gustavo
2011-02-01
Rocky Mountain spotted fever (RMSF) is a tick-borne disease caused by the obligate intracellular bacterium Rickettsia rickettsii. Although RMSF was first reported in Colombia in 1937, it remains a neglected disease. Herein, we describe the investigation of a large cluster of cases of spotted fever rickettsiosis in a new area of Colombia.
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Rocky Mountain Research Station 2008-2012 National Fire Plan Investments
Erika Gallegos
2013-01-01
This report highlights selected accomplishments by the USDA Forest Service Rocky Mountain Research Station's Wildland Fire and Fuels Research & Development projects in support of the National Fire Plan from 2008 through 2012. These projects are examples of the broad range of knowledge and tools developed by National Fire Plan funding beginning in 2008.
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TEMPERATURE STRUCTURE AND ATMOSPHERIC CIRCULATION OF DRY TIDALLY LOCKED ROCKY EXOPLANETS
Energy Technology Data Exchange (ETDEWEB)
Koll, Daniel D. B.; Abbot, Dorian S., E-mail: dkoll@uchicago.edu [Department of the Geophysical Sciences, University of Chicago, Chicago, IL 60637 (United States)
2016-07-10
Next-generation space telescopes will observe the atmospheres of rocky planets orbiting nearby M-dwarfs. Understanding these observations will require well-developed theory in addition to numerical simulations. Here we present theoretical models for the temperature structure and atmospheric circulation of dry, tidally locked rocky exoplanets with gray radiative transfer and test them using a general circulation model (GCM). First, we develop a radiative-convective (RC) model that captures surface temperatures of slowly rotating and cool atmospheres. Second, we show that the atmospheric circulation acts as a global heat engine, which places strong constraints on large-scale wind speeds. Third, we develop an RC-subsiding model which extends our RC model to hot and thin atmospheres. We find that rocky planets develop large day–night temperature gradients at a ratio of wave-to-radiative timescales up to two orders of magnitude smaller than the value suggested by work on hot Jupiters. The small ratio is due to the heat engine inefficiency and asymmetry between updrafts and subsidence in convecting atmospheres. Fourth, we show, using GCM simulations, that rotation only has a strong effect on temperature structure if the atmosphere is hot or thin. Our models let us map out atmospheric scenarios for planets such as GJ 1132b, and show how thermal phase curves could constrain them. Measuring phase curves of short-period planets will require similar amounts of time on the James Webb Space Telescope as detecting molecules via transit spectroscopy, so future observations should pursue both techniques.
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Pedersen, Niklas; Holyoak, David T; Newton, Angela E
2007-06-01
The Bryaceae are a large cosmopolitan moss family including genera of significant morphological and taxonomic complexity. Phylogenetic relationships within the Bryaceae were reconstructed based on DNA sequence data from all three genomic compartments. In addition, maximum parsimony and Bayesian inference were employed to reconstruct ancestral character states of 38 morphological plus four habitat characters and eight insertion/deletion events. The recovered phylogenetic patterns are generally in accord with previous phylogenies based on chloroplast DNA sequence data and three major clades are identified. The first clade comprises Bryum bornholmense, B. rubens, B. caespiticium, and Plagiobryum. This corroborates the hypothesis suggested by previous studies that several Bryum species are more closely related to Plagiobryum than to the core Bryum species. The second clade includes Acidodontium, Anomobryum, and Haplodontium, while the third clade contains the core Bryum species plus Imbribryum. Within the latter clade, B. subapiculatum and B. tenuisetum form the sister clade to Imbribryum. Reconstructions of ancestral character states under maximum parsimony and Bayesian inference suggest fourteen morphological synapomorphies for the ingroup and synapomorphies are detected for most clades within the ingroup. Maximum parsimony and Bayesian reconstructions of ancestral character states are mostly congruent although Bayesian inference shows that the posterior probability of ancestral character states may decrease dramatically when node support is taken into account. Bayesian inference also indicates that reconstructions may be ambiguous at internal nodes for highly polymorphic characters.
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International Nuclear Information System (INIS)
1995-01-01
This is the fifth in a series of seven volumes which constitute a guide to records of the Rocky Flats Plant useful for conducting health-related research. The primary purpose of Volume 5 is to describe record series pertaining to waste management activities at the Department of Energy's (DOE) Rocky Flats Plant, now named the Rocky Flats Environmental Technology Site, near Denver, Colorado. History Associates Incorporated (HAI) prepared this guide as part of its work as the support services contractor for DOE's Epidemiologic Records Inventory Project. This introduction briefly describes the Epidemiologic Records Inventory Project and HAI's role in the project, provides a history of waste management practices at Rocky Flats, and identifies organizations contributing to waste management policies and activities. Other topics include the scope and arrangement of this volume and the organization to contact for access to these records
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Xiao, Shi-zhen; Xiong, Kang-ning; Lan, Jia-cheng; Zhang, Hui; Yang, Long
2015-05-01
Five springs representing different land-use types and different karst rocky desertification treatment models were chosen at the Huajiang Karst Rocky Desertification Treatment Demonstration Site in Guanling-Zhenfeng Counties in Guizhou, to analyze the features of underground water chemistry and dissolved inorganic carbon isotopes (δ13C(DIC)) and reveal the effect of rocky desertification treatment on karstification and water quality. It was found that, the underground water type of the research area was HCO3-Ca; the water quality of the springs which were relatively less affected by human activities including Shuijingwan Spring (SJW) , Gebei Spring (GB), and Maojiawan Spring (MJW) was better than those relatively more affected by human activities including Diaojing Spring (DJ) and Tanjiazhai Spring (TJZ) , the main ion concentrations and electrical conductivity of which were higher; pH, SIc and pCO2 were sensitive to land-use types and rocky desertification treatment, which could be shown by the higher pH and SIc and lower pCO2 in MJW than those in the other four springs; (Ca(2+) + Mg2+)/HCO(3-) of SJW, MJW and GB were nearly 1:1, dominated by carbonate rock weathering by carbon acid, while the (Ca(2+) + Mg2+) of DJ and TJZ was much higher than HCO3-, suggesting that sulfate and nitrate might also dissolve carbonate rock because of the agricultural activities; δ13C(DIC) was lighter in wet season because of the higher biological activities; the average δ13C(DIC) was in the order of DJ (-12.79 per thousand) desertification and lighter after the rocky desertification are treated and controlled.
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International Nuclear Information System (INIS)
Moment, R.L.; Gibbs, F.E.; Freiboth, C.J.
1999-01-01
This report documents the processing of Uranium-233 at the Rocky Flats Plant (Rocky Flats Environmental Technology Site). The information may be used to meet Waste Isolation Pilot Plant (WIPP) Waste Acceptance Criteria (WAC)and for determining potential Uranium-233 content in applicable residue waste streams
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Book Review :The Essential Guide to Rocky Mountain Mushrooms by Habitat
A mushroom guide book, 'The Essential Guide to Rocky Mountain Mushrooms by Habitat' by Cathy L. Cripps, Vera S. Evenson, and Michael Kou (University of Illinois Press, 260 pages), is reviewed in non-technical fashion from the standpoints of format, comprehensiveness, and clarity. Postive features (...
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Rocky Worlds Limited to ∼1.8 Earth Radii by Atmospheric Escape during a Star’s Extreme UV Saturation
Energy Technology Data Exchange (ETDEWEB)
Lehmer, Owen R.; Catling, David C., E-mail: info@lehmer.us [Dept. Earth and Space Sciences, Box 351310, University of Washington, Seattle, WA (United States)
2017-08-20
Recent observations and analysis of low-mass (<10 M {sub ⊕}) exoplanets have found that rocky planets only have radii up to 1.5–2 R {sub ⊕}. Two general hypotheses exist for the cause of the dichotomy between rocky and gas-enveloped planets (or possible water worlds): either low-mass planets do not necessarily form thick atmospheres of a few wt.%, or the thick atmospheres on these planets easily escape, driven by X-ray and extreme ultraviolet (XUV) emissions from young parent stars. Here, we show that a cutoff between rocky and gas-enveloped planets due to hydrodynamic escape is most likely to occur at a mean radius of 1.76 ± 0.38 (2 σ ) R {sub ⊕} around Sun-like stars. We examine the limit in rocky planet radii predicted by hydrodynamic escape across a wide range of possible model inputs, using 10,000 parameter combinations drawn randomly from plausible parameter ranges. We find a cutoff between rocky and gas-enveloped planets that agrees with the observed cutoff. The large cross-section available for XUV absorption in the extremely distended primitive atmospheres of low-mass planets results in complete loss of atmospheres during the ∼100 Myr phase of stellar XUV saturation. In contrast, more-massive planets have less-distended atmospheres and less escape, and so retain thick atmospheres through XUV saturation—and then indefinitely as the XUV and escape fluxes drop over time. The agreement between our model and exoplanet data leads us to conclude that hydrodynamic escape plausibly explains the observed upper limit on rocky planet size and few planets (a “valley”, or “radius gap”) in the 1.5–2 R {sub ⊕} range.
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Rocky Flats Plant Site Environmental Report: 1993 Highlights
International Nuclear Information System (INIS)
1993-01-01
The Rocky Flats Plant Site Environmental Report provides summary information on the plant's environmental monitoring programs and the results recorded during 1993. The report contains a compliance summary, results of environmental monitoring and other related programs, a review of environmental remediation activities, information on external gamma radiation dose monitoring, and radiation dose estimates for the surrounding population. This section provides an overview of these topics and summarizes more comprehensive discussions found in the main text of this annual report
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Comparative wood anatomy of some shrubs native to the Northern Rocky Mountains
Arlene Dale
1968-01-01
This paper describes some xylem characteristics of the more important shrub species of the Northern Rockies and presents a key for identifying shrub-wood specimens by microscopic characters. The paper contains photomicrographs of 55 shrub woods.
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Cascading effects of ocean acidification in a rocky subtidal community.
Directory of Open Access Journals (Sweden)
Valentina Asnaghi
Full Text Available Temperate marine rocky habitats may be alternatively characterized by well vegetated macroalgal assemblages or barren grounds, as a consequence of direct and indirect human impacts (e.g. overfishing and grazing pressure by herbivorous organisms. In future scenarios of ocean acidification, calcifying organisms are expected to be less competitive: among these two key elements of the rocky subtidal food web, coralline algae and sea urchins. In order to highlight how the effects of increased pCO2 on individual calcifying species will be exacerbated by interactions with other trophic levels, we performed an experiment simultaneously testing ocean acidification effects on primary producers (calcifying and non-calcifying algae and their grazers (sea urchins. Artificial communities, composed by juveniles of the sea urchin Paracentrotus lividus and calcifying (Corallina elongata and non-calcifying (Cystoseira amentacea var stricta, Dictyota dichotoma macroalgae, were subjected to pCO2 levels of 390, 550, 750 and 1000 µatm in the laboratory. Our study highlighted a direct pCO2 effect on coralline algae and on sea urchin defense from predation (test robustness. There was no direct effect on the non-calcifying macroalgae. More interestingly, we highlighted diet-mediated effects on test robustness and on the Aristotle's lantern size. In a future scenario of ocean acidification a decrease of sea urchins' density is expected, due to lower defense from predation, as a direct consequence of pH decrease, and to a reduced availability of calcifying macroalgae, important component of urchins' diet. The effects of ocean acidification may therefore be contrasting on well vegetated macroalgal assemblages and barren grounds: in the absence of other human impacts, a decrease of biodiversity can be predicted in vegetated macroalgal assemblages, whereas a lower density of sea urchin could help the recovery of shallow subtidal rocky areas affected by overfishing from
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Cascading effects of ocean acidification in a rocky subtidal community.
Asnaghi, Valentina; Chiantore, Mariachiara; Mangialajo, Luisa; Gazeau, Frédéric; Francour, Patrice; Alliouane, Samir; Gattuso, Jean-Pierre
2013-01-01
Temperate marine rocky habitats may be alternatively characterized by well vegetated macroalgal assemblages or barren grounds, as a consequence of direct and indirect human impacts (e.g. overfishing) and grazing pressure by herbivorous organisms. In future scenarios of ocean acidification, calcifying organisms are expected to be less competitive: among these two key elements of the rocky subtidal food web, coralline algae and sea urchins. In order to highlight how the effects of increased pCO2 on individual calcifying species will be exacerbated by interactions with other trophic levels, we performed an experiment simultaneously testing ocean acidification effects on primary producers (calcifying and non-calcifying algae) and their grazers (sea urchins). Artificial communities, composed by juveniles of the sea urchin Paracentrotus lividus and calcifying (Corallina elongata) and non-calcifying (Cystoseira amentacea var stricta, Dictyota dichotoma) macroalgae, were subjected to pCO2 levels of 390, 550, 750 and 1000 µatm in the laboratory. Our study highlighted a direct pCO2 effect on coralline algae and on sea urchin defense from predation (test robustness). There was no direct effect on the non-calcifying macroalgae. More interestingly, we highlighted diet-mediated effects on test robustness and on the Aristotle's lantern size. In a future scenario of ocean acidification a decrease of sea urchins' density is expected, due to lower defense from predation, as a direct consequence of pH decrease, and to a reduced availability of calcifying macroalgae, important component of urchins' diet. The effects of ocean acidification may therefore be contrasting on well vegetated macroalgal assemblages and barren grounds: in the absence of other human impacts, a decrease of biodiversity can be predicted in vegetated macroalgal assemblages, whereas a lower density of sea urchin could help the recovery of shallow subtidal rocky areas affected by overfishing from barren grounds to
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Field guide to diseases & insects of the Rocky Mountain Region
Forest Health Protection. Rocky Mountain Region
2010-01-01
This field guide is a forest management tool for field identification of biotic and abiotic agents that damage native trees in Colorado, Kansas, Nebraska, South Dakota, and Wyoming, which constitute the USDA Forest Service's Rocky Mountain Region. The guide focuses only on tree diseases and forest insects that have significant economic, ecological, and/ or...
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Sexually dimorphic effects of ancestral exposure to vinclozolin on stress reactivity in rats.
Gillette, Ross; Miller-Crews, Isaac; Nilsson, Eric E; Skinner, Michael K; Gore, Andrea C; Crews, David
2014-10-01
How an individual responds to the environment depends upon both personal life history as well as inherited genetic and epigenetic factors from ancestors. Using a 2-hit, 3 generations apart model, we tested how F3 descendants of rats given in utero exposure to the environmental endocrine-disrupting chemical (EDC) vinclozolin reacted to stress during adolescence in their own lives, focusing on sexually dimorphic phenotypic outcomes. In adulthood, male and female F3 vinclozolin- or vehicle-lineage rats, stressed or nonstressed, were behaviorally characterized on a battery of tests and then euthanized. Serum was used for hormone assays, and brains were used for quantitative PCR and transcriptome analyses. Results showed that the effects of ancestral exposure to vinclozolin converged with stress experienced during adolescence in a sexually dimorphic manner. Debilitating effects were seen at all levels of the phenotype, including physiology, behavior, brain metabolism, gene expression, and genome-wide transcriptome modifications in specific brain nuclei. Additionally, females were significantly more vulnerable than males to transgenerational effects of vinclozolin on anxiety but not sociality tests. This fundamental transformation occurs in a manner not predicted by the ancestral exposure or the proximate effects of stress during adolescence, an interaction we refer to as synchronicity.
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Directory of Open Access Journals (Sweden)
Jessica E. Halofsky
2017-08-01
Full Text Available Public lands in the US Rocky Mountains provide critical ecosystem services, especially to rural communities that rely on these lands for fuel, food, water, and recreation. Climate change will likely affect the ability of these lands to provide ecosystem services. We describe 2 efforts to assess climate change vulnerabilities and develop adaptation options on federal lands in the Rocky Mountains. We specifically focus on aspects that affect community economic security and livelihood security, including water quality and quantity, timber, livestock grazing, and recreation. Headwaters of the Rocky Mountains serve as the primary source of water for large populations, and these headwaters are located primarily on public land. Thus, federal agencies will play a key role in helping to protect water quantity and quality by promoting watershed function and water conservation. Although increased temperatures and atmospheric concentration of CO2 have the potential to increase timber and forage production in the Rocky Mountains, those gains may be offset by wildfires, droughts, insect outbreaks, non-native species, and altered species composition. Our assessment identified ways in which federal land managers can help sustain forest and range productivity, primarily by increasing ecosystem resilience and minimizing current stressors, such as invasive species. Climate change will likely increase recreation participation. However, recreation managers will need more flexibility to adjust practices, provide recreation opportunities, and sustain economic benefits to communities. Federal agencies are now transitioning from the planning phase of climate change adaptation to implementation to ensure that ecosystem services will continue to be provided from federal lands in a changing climate.
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Evaluation of episodic acidification and amphibian declines in the Rocky Mountains
Frank A. Vertucci; Paul Stephen Corn
1996-01-01
We define criteria for documenting episodic acidification of amphibian breeding habitats and examine whether episodic acidification is responsible for observed declines of amphibian populations in the Rocky Mountains. Anthropogenic episodic acidification, caused by atmospheric deposition of sulfate and nitrate, occurs when the concentration of acid anions increases...
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Dust Allergens within Rural Northern Rocky Mountain Residences.
Weiler, Emily; Semmens, Erin; Noonan, Curtis; Cady, Carol; Ward, Tony
2015-01-23
To date, few studies have characterized allergens within residences located in rural areas of the northern Rocky Mountain region. In this study, we collected dust samples from 57 homes located throughout western Montana and northern Idaho. Dust samples were collected and later analyzed for dust mite allergens Der f 1 and Der p 1 , Group 2 mite allergens ( Der p 2 and Der f 2 ), domestic feline ( Fel d 1 ), and canine ( Can f 1 ). Indoor temperature and humidity levels were also measured during the sampling program, as were basic characteristics of each home. Dog (96%) and cat (82%) allergens were the most prevalent allergens found in these homes (even when a feline or canine did not reside in the home). Results also revealed the presence of dust mites. Seven percent (7%) of homes tested positive for Der p 1 , 19% of homes were positive for Der f 1 , and 5% of homes were positive for the Group 2 mite allergens. Indoor relative humidity averaged 27.0 ± 7.6% within the homes. Overall, humidity was not significantly associated with dust mite presence, nor was any of the other measured home characteristics. This study provides a descriptive assessment of indoor allergen presence (including dust mites) in rural areas of the northern Rocky Mountains, and provides new information to assist regional patients with reducing allergen exposure using in-home intervention strategies.
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Circumscribing campo rupestre - megadiverse Brazilian rocky montane savanas.
Alves, R J V; Silva, N G; Oliveira, J A; Medeiros, D
2014-05-01
Currently campo rupestre (CR) is a name accepted and used internationally by botanists, zoologists, and other naturalists, usually applied to a very specific ecosystem, despite the lack of a consensual published circumscription. We present a tentative geographic circumscription of the term, combining data on climate, geology, geomorphology, soil, flora, fauna and vegetation. The circumscription of campo rupestre proposed herein is based on the following premises: (1) the classification of vegetation is not an exact science, and it is difficult to attain a high degree of consensus to the circumscription of vegetation names; (2) despite this, vegetation classification is useful for conservation and management. It is thus desirable to circumscribe vegetation types with the greatest attainable precision; (3) there is a need to preserve all montane and rocky vegetation types, regardless of classification, biome, etc; (4) the CRs are formed by a complex mosaic of vegetation types including rock-dwelling, psammophilous, aquatic, epiphytic, and penumbral plant communities. Campos rupestres stricto sensu are a Neotropical, azonal vegetation complex endemic to Brazil, forming a mosaic of rocky mountaintop "archipelagos" inserted within a matrix of zonal vegetation, mainly in the Cerrado and Caatinga provinces of the Brazilian Shield (southeastern, northeastern and central-western regions), occurring mainly above 900 m asl. up to altitudes exceeding 2000 m, having measured annual precipitation between 800 and 1500 mm, and an arid season of two to five months.
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Options for the disposition of current inventory of Rocky Flats Plant residues
International Nuclear Information System (INIS)
Chang, Lychin.
1994-01-01
With the end of the Cold War, much concern has been directed towards the accumulation of special nuclear material resulting from the dismantlement of a large number of nuclear weapons. This concern has opened up a debate over the final disposition of the large inventory of weapons-capable plutonium. Technologies for the conversion of plutonium into acceptable forms will need to be assessed and evaluated. Candidate strategies for interim and final disposition include a variety of immobilization techniques (vitrification in glass, ceramic, or metal), conversion to reactor fuel, or direct discard as waste. The selected disposition strategy will be chosen based upon a range of decision metric such as expected conversion costs, equipment requirements, and waste generation. To this end, a systems analysis approach is necessary for the evaluation and comparison of the different disposition strategies. Current data on inventory of plutonium, such as that at the Rocky Flats Plant (RFP), may be useful for the evaluation and selection of candidate disposition technologies. A preliminary analysis of the residues of scrap at Rocky Flats was performed to establish a foundation for comparison of candidate strategies. About 3 metric tons of plutonium and 270 metric tons of other wastes remain in the inventory at Rocky Flats. Estimates on the equipment, facility, manpower, and cost requirements to process this inventory over a proposed 10-year cleanup campaign will provide a benchmark for comparison and assessment of proposed disposition technologies
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Compaction-Driven Evolution of Pluto's Rocky Core: Implications for Water-Rock Interactions
Gabasova, L. R.; Tobie, G.; Choblet, G.
2018-05-01
We model the compaction of Pluto's rocky core after accretion and explore the potential for hydrothermal circulation within the porous layer, as well as examine its effect on core cooling and the persistence of a liquid internal ocean.
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Rocky Flats Environmental Technology Site Ecological Monitoring Program 1995 annual report
International Nuclear Information System (INIS)
1995-01-01
The Ecological Monitoring Program (ECMP) was established at the Rocky Flats Environmental Technology Site (Site) in September 1992. At that time, EcMP staff developed a Program Plan that was peer-reviewed by scientists from western universities before submittal to DOE RFFO in January 1993. The intent of the program is to measure several quantitative variables at different ecological scales in order to characterize the Rocky Flats ecosystem. This information is necessary to document ecological conditions at the Site in impacted and nonimpacted areas to determine if Site practices have had ecological impacts, either positive or negative. This information can be used by managers interested in future use scenarios and CERCLA activities. Others interested in impact analysis may also find the information useful. In addition, these measurements are entered into a database which will serve as a long-term information repository that will document long-term trends and potential future changes to the Site, both natural and anthropogenic
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239Pu contamination in snakes inhabiting the Rocky Flats Plant site
International Nuclear Information System (INIS)
Geiger, R.A.; Winsor, T.F.
1975-01-01
For approximately four years studies have been under way at the Rocky Flats plant to determine contamination patterns and concentrations of Pu in the biota. Contamination of the Rocky Flats environs has resulted from at least three incidents, a September 1957 fire, a May 1969 fire, and leaking barrels containing plutonium-laden cutting oil. The latter incident was considered by far the major source of the plutonium contamination. Results are reported from a study conducted to determine whether snake tissues of the area contained detectable amounts of 239 Pu and, if so, at what concentrations. Eastern yellow-bellied racers (Coluber constrictor flaviventris, bullsnakes (Pituophis melanoleucus sayi, and prairie rattlesnakes (Crotalus viridis viridis, were collected for 239 Pu bioassay of lung, liver, and bone tissues. Snakes were captured using drift fences terminating in funnel traps and by opportunistic sampling. Results led to the conclusion that snakes are not an important organism in the redistribution of 239 Pu
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Reactive barrier technologies for treatment of contaminated groundwater at Rocky Flats
International Nuclear Information System (INIS)
Marozas, D.C.; Bujewski, G.E.; Castaneda, N.
1997-01-01
The U.S. Department of Energy (DOE) Office of Science and Technology Subsurface Contaminants Focus Area is supporting the investigation of reactive barrier technologies to mitigate the risks associated with mixed organic/radioactive waste at several DOE sites. Groundwater from a small contaminated plume at the Rocky Flats Environmental Technology Site (RFETS) is being used to evaluate passive reactive material treatment. Permeable reactive barriers which intercept contaminants and destroy the VOC component while containing radionuclides are attractive for a number of reasons relating to public and regulatory acceptance. In situ treatment keeps contaminants away from the earth's surface, there is no above-ground treatment equipment that could expose workers and the public and operational costs are expected to be lower than currently used technologies. This paper will present results from preliminary site characterization and in-field small-scale column testing of reactive materials at RFETS. Successful demonstration is expected to lead to full-scale implementation of the technology at several DOE sites, including Rocky Flats
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Rocky Flats Environmental Technology Site Ecological Monitoring Program 1995 annual report
Energy Technology Data Exchange (ETDEWEB)
NONE
1995-05-31
The Ecological Monitoring Program (ECMP) was established at the Rocky Flats Environmental Technology Site (Site) in September 1992. At that time, EcMP staff developed a Program Plan that was peer-reviewed by scientists from western universities before submittal to DOE RFFO in January 1993. The intent of the program is to measure several quantitative variables at different ecological scales in order to characterize the Rocky Flats ecosystem. This information is necessary to document ecological conditions at the Site in impacted and nonimpacted areas to determine if Site practices have had ecological impacts, either positive or negative. This information can be used by managers interested in future use scenarios and CERCLA activities. Others interested in impact analysis may also find the information useful. In addition, these measurements are entered into a database which will serve as a long-term information repository that will document long-term trends and potential future changes to the Site, both natural and anthropogenic.
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Outbreak of Rocky Mountain spotted fever in Córdoba, Colombia
Directory of Open Access Journals (Sweden)
Marylin Hidalgo
2011-02-01
Full Text Available Rocky Mountain spotted fever (RMSF is a tick-borne disease caused by the obligate intracellular bacterium Rickettsia rickettsii. Although RMSF was first reported in Colombia in 1937, it remains a neglected disease. Herein, we describe the investigation of a large cluster of cases of spotted fever rickettsiosis in a new area of Colombia.
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Martin, Y. E.; Johnson, E. A.; Chaikina, O.
2013-10-01
During the cycle of forest disturbance, regeneration, and maturity, tree mortality leading to topple is a regular occurrence. When tree topple occurs relatively soon after mortality and if the tree has attained some threshold diameter at breast height (dbh) at the time of death, then notable amounts of soil may be upheaved along with the root wad. This upheaval may result in sediment transfers and soil production. A combination of field evidence and numerical modeling is used herein to gain insights regarding the temporal dynamics of tree topple, associated root throw processes, and pit-mound microtopography. Results from our model of tree population dynamics demonstrate temporal patterns in root throw processes in subalpine forests of the Canadian Rockies, a region in which forests are affected largely by wildfire disturbance. As the forest regenerates after disturbance, the new cohort of trees has to reach a critical dbh before significant root plate upheaval can occur; in the subalpine forests of the Canadian Rockies, this may take up to ~ 102 years. Once trees begin to reach this critical dbh for root plate upheaval, a period of sporadic root throw arises that is caused by mortality of trees during competition. In due course, another wildfire will occur on the landscape and a period of much increased root throw activity then takes place for the next several decades; tree sizes and, therefore, the amount of sediment disturbance will be greater the longer the time period since the previous fire. Results of previous root throw studies covering a number of regional settings are used to guide an exercise in diffusion modeling with the aim of defining a range of reasonable diffusion coefficients for pit-mound degradation; the most appropriate values to fit the field data ranged from 0.01 m2 y- 1 to 0.1 m2 y- 1. A similar exercise is then undertaken that is guided by our field observations in subalpine forests of the Canadian Rockies. For these forests, the most
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Ismail, Siti Izera; Batzer, Jean Carlson; Harrington, Thomas C; Crous, Pedro W; Lavrov, Dennis V; Li, Huanyu; Gleason, Mark L
2016-01-01
Members of the sooty blotch and flyspeck (SBFS) complex are epiphytic fungi in the Ascomycota that cause economically damaging blemishes of apples worldwide. SBFS fungi are polyphyletic, but approx. 96% of SBFS species are in the Capnodiales. Evolutionary origins of SBFS fungi remain unclear, so we attempted to infer their origins by means of ancestral state reconstruction on a phylogenetic tree built utilizing genes for the nuc 28S rDNA (approx. 830 bp from near the 59 end) and the second largest subunit of RNA polymerase II (RPB2). The analyzed taxa included the well-known genera of SBFS as well as non-SBFS fungi from seven families within the Capnodiales. The non-SBFS taxa were selected based on their distinct ecological niches, including plant-parasitic and saprophytic species. The phylogenetic analyses revealed that most SBFS species in the Capnodiales are closely related to plant-parasitic fungi. Ancestral state reconstruction provided strong evidence that plant-parasitic fungi were the ancestors of the major SBFS lineages. Knowledge gained from this study may help to better understand the ecology and evolution of epiphytic fungi. © 2016 by The Mycological Society of America.
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Pickering, Judith
2012-11-01
This paper explores how untold and unresolved intergenerational trauma may be transmitted through unconscious channels of communication, manifesting in the dreams of descendants. Unwitting carriers for that which was too horrific for their ancestors to bear, descendants may enter analysis through an unconscious need to uncover past secrets, piece together ancestral histories before the keys to comprehending their terrible inheritance die with their forebears. They seek the relational containment of the analytic relationship to provide psychological conditions to bear the unbearable, know the unknowable, speak the unspeakable and redeem the unredeemable. In the case of 'Rachael', initial dreams gave rise to what Hobson (1984) called 'moving metaphors of self' in the analytic field. Dream imagery, projective and introjective processes in the transference-countertransference dynamics gradually revealed an unknown ancestral history. I clarify the back and forth process from dream to waking dream thoughts to moving metaphors and differentiate the moving metaphor from a living symbol. I argue that the containment of the analytic relationship nested within the security of the analytic space is a necessary precondition for such healing processes to occur. © 2012, The Society of Analytical Psychology.
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2013-01-01
Background Ancestral environmental exposures to a variety of environmental factors and toxicants have been shown to promote the epigenetic transgenerational inheritance of adult onset disease. The present work examined the potential transgenerational actions of the insecticide dichlorodiphenyltrichloroethane (DDT) on obesity and associated disease. Methods Outbred gestating female rats were transiently exposed to a vehicle control or DDT and the F1 generation offspring bred to generate the F2 generation and F2 generation bred to generate the F3 generation. The F1 and F3 generation control and DDT lineage rats were aged and various pathologies investigated. The F3 generation male sperm were collected to investigate methylation between the control and DDT lineage male sperm. Results The F1 generation offspring (directly exposed as a fetus) derived from the F0 generation exposed gestating female rats were not found to develop obesity. The F1 generation DDT lineage animals did develop kidney disease, prostate disease, ovary disease and tumor development as adults. Interestingly, the F3 generation (great grand-offspring) had over 50% of males and females develop obesity. Several transgenerational diseases previously shown to be associated with metabolic syndrome and obesity were observed in the testis, ovary and kidney. The transgenerational transmission of disease was through both female (egg) and male (sperm) germlines. F3 generation sperm epimutations, differential DNA methylation regions (DMR), induced by DDT were identified. A number of the genes associated with the DMR have previously been shown to be associated with obesity. Conclusions Observations indicate ancestral exposure to DDT can promote obesity and associated disease transgenerationally. The etiology of disease such as obesity may be in part due to environmentally induced epigenetic transgenerational inheritance. PMID:24228800
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Rocky Flats Plant Site Environmental Report: 1993 Highlights
Energy Technology Data Exchange (ETDEWEB)
1993-12-31
The Rocky Flats Plant Site Environmental Report provides summary information on the plant`s environmental monitoring programs and the results recorded during 1993. The report contains a compliance summary, results of environmental monitoring and other related programs, a review of environmental remediation activities, information on external gamma radiation dose monitoring, and radiation dose estimates for the surrounding population. This section provides an overview of these topics and summarizes more comprehensive discussions found in the main text of this annual report.
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DOE awards first economic conversion project at Rocky Flats
International Nuclear Information System (INIS)
Lobsenz, G.
1993-01-01
In the first economic conversion project at an Energy Department weapons facility, a Colorado company this week was given permission to refurbish four buildings at DOE's Rocky Flats plant to recycle slightly radioactive scrap metal. DOE, acting in conjunction with the Environmental Protection Agency and Colorado authorities, announced Tuesday it had given the go-ahead to Manufacturing Sciences Corp. of Golden, Colorado, to proceed with planning for the project
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Directory of Open Access Journals (Sweden)
Keightley Peter D
2008-09-01
Full Text Available Abstract Background Molecular evolutionary studies in mammals often estimate nucleotide substitution rates within and outside CpG dinucleotides separately. Frequently, in alignments of two sequences, the division of sites into CpG and non-CpG classes is based simply on the presence or absence of a CpG dinucleotide in either sequence, a procedure that we refer to as CpG/non-CpG assignment. Although it likely that this procedure is biased, it is generally assumed that the bias is negligible if species are very closely related. Results Using simulations of DNA sequence evolution we show that assignment of the ancestral CpG state based on the simple presence/absence of the CpG dinucleotide can seriously bias estimates of the substitution rate, because many true non-CpG changes are misassigned as CpG. Paradoxically, this bias is most severe between closely related species, because a minimum of two substitutions are required to misassign a true ancestral CpG site as non-CpG whereas only a single substitution is required to misassign a true ancestral non-CpG site as CpG in a two branch tree. We also show that CpG misassignment bias differentially affects fourfold degenerate and noncoding sites due to differences in base composition such that fourfold degenerate sites can appear to be evolving more slowly than noncoding sites. We demonstrate that the effects predicted by our simulations occur in a real evolutionary setting by comparing substitution rates estimated from human-chimp coding and intronic sequence using CpG/non-CpG assignment with estimates derived from a method that is largely free from bias. Conclusion Our study demonstrates that a common method of assigning sites into CpG and non CpG classes in pairwise alignments is seriously biased and recommends against the adoption of ad hoc methods of ancestral state assignment.
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Movements and habitat use of rocky mountain elk and mule deer.
Alan A. Ager; Haiganoush K. Preisler; Bruce K. Johnson; John G. Kie
2004-01-01
Understanding how ungulates use large landscapes to meet their daily needs for food, security and other resources is critical to wildlife management and conservation practices (Johnson et al. 2002). For ungulates like Rocky Mountain elk (Gems elaphui) and mule deer (Odocoileus hemionus), landscapes are a mosaic of different...
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A Fatal Urban Case of Rocky Mountain Spotted Fever Presenting an Eschar in San José, Costa Rica
Argüello, Ana Patricia; Hun, Laya; Rivera, Patricia; Taylor, Lizeth
2012-01-01
This study reports the first urban human case of Rocky Mountain spotted fever caused by Rickettsia rickettsii, in Costa Rica. An 8-year-old female who died at the National Children's Hospital 4 days after her admission, and an important and significant observation was the presence of an “eschar” (tache noire), which is typical in some rickettsial infections but not frequent in Rocky Mountain spotted fever cases. PMID:22855769
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A Fatal Urban Case of Rocky Mountain Spotted Fever Presenting an Eschar in San José, Costa Rica
Argüello, Ana Patricia; Hun, Laya; Rivera, Patricia; Taylor, Lizeth
2012-01-01
This study reports the first urban human case of Rocky Mountain spotted fever caused by Rickettsia rickettsii, in Costa Rica. An 8-year-old female who died at the National Children's Hospital 4 days after her admission, and an important and significant observation was the presence of an “eschar” (tache noire), which is typical in some rickettsial infections but not frequent in Rocky Mountain spotted fever cases.
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Esthetic evaluation of timber harvesting in the Northern Rockies - a progressive report
Dennis L. Schweitzer; James R. Ullrich; Robert E. Benson
1976-01-01
Panels of judges have been evaluating the esthetic dimension of harvested areas in the Northern Rockies. Studies conducted in Wyoming and Montana agree with intuition in that forest scenes are generally liked less as the evidence of man's activities increases.
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Vegetation of the coastal fynbos and rocky headlands south of George, South Africa
Directory of Open Access Journals (Sweden)
D. B. Hoare
2000-02-01
Full Text Available Community structure and composition of the coastal fynbos and rocky headland plant communities south of George, southern Cape, were studied. Vegetation was analysed using standard sampling procedures of the floristic-sociological approach of Braun-Blanquet. The releve data were subject to TWIN SPAN-based divisive classification, and ordinated by Principal Coordinates Analysis with the aim to identify vegetation coenocline subsequently interpreted in terms of underlying environmental gradients. Most of the sampled vegetation was classified as coastal fynbos. The Leucadendron salignum-Tetraria cuspidata Fynbos Community was found to occupy sheltered habitats, whereas the Relhania calyci- na-Passerina vulgaris Fynbos Community was found in exposed habitats The other two communities characterise strongly exposed rocky headlands. The Pterocelastrus tricuspidatus-Ruschia tenella Community is wind-sheared scrub, and the Gazania rigens- Limonium scabrum Rocky Headland Community is a loose-canopy, low-grown herbland, characterised by the occurrence of partly salt-tolerant and succulent herbs. The ordination of the fynbos communities revealed a horseshoe structure allowing a direct recognition of a coenocline spanning two fynbos communities along the Axis 1 interpreted in terms of exposure to wind and salt spray. A considerable amount of alien plant infestation was also present. This appears to be the largest threat to the continued existence of this coastal fynbos.
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What's new in Rocky Mountain spotted fever?
Chen, Luke F; Sexton, Daniel J
2008-09-01
Rocky Mountain spotted fever (RMSF) remains an important illness despite an effective therapy because it is difficult to diagnose and is capable of producing a fatal outcome. The pathogenesis of RMSF remains, in large part, an enigma. However, recent research has helped shed light on this mystery. Importantly, the diagnosis of RMSF must be considered in all febrile patients who have known or possible exposure to ticks, especially if they live in or have traveled to endemic regions during warmer months. Decisions about giving empiric therapy to such patients are difficult and require skill and careful judgement.
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The mammary gland-specific marsupial ELP and eutherian CTI share a common ancestral gene
Directory of Open Access Journals (Sweden)
Pharo Elizabeth A
2012-06-01
Full Text Available Abstract Background The marsupial early lactation protein (ELP gene is expressed in the mammary gland and the protein is secreted into milk during early lactation (Phase 2A. Mature ELP shares approximately 55.4% similarity with the colostrum-specific bovine colostrum trypsin inhibitor (CTI protein. Although ELP and CTI both have a single bovine pancreatic trypsin inhibitor (BPTI-Kunitz domain and are secreted only during the early lactation phases, their evolutionary history is yet to be investigated. Results Tammar ELP was isolated from a genomic library and the fat-tailed dunnart and Southern koala ELP genes cloned from genomic DNA. The tammar ELP gene was expressed only in the mammary gland during late pregnancy (Phase 1 and early lactation (Phase 2A. The opossum and fat-tailed dunnart ELP and cow CTI transcripts were cloned from RNA isolated from the mammary gland and dog CTI from cells in colostrum. The putative mature ELP and CTI peptides shared 44.6%-62.2% similarity. In silico analyses identified the ELP and CTI genes in the other species examined and provided compelling evidence that they evolved from a common ancestral gene. In addition, whilst the eutherian CTI gene was conserved in the Laurasiatherian orders Carnivora and Cetartiodactyla, it had become a pseudogene in others. These data suggest that bovine CTI may be the ancestral gene of the Artiodactyla-specific, rapidly evolving chromosome 13 pancreatic trypsin inhibitor (PTI, spleen trypsin inhibitor (STI and the five placenta-specific trophoblast Kunitz domain protein (TKDP1-5 genes. Conclusions Marsupial ELP and eutherian CTI evolved from an ancestral therian mammal gene before the divergence of marsupials and eutherians between 130 and 160 million years ago. The retention of the ELP gene in marsupials suggests that this early lactation-specific milk protein may have an important role in the immunologically naïve young of these species.
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Evidence for Ancestral Programming of Resilience in a Two-Hit Stress Model
Directory of Open Access Journals (Sweden)
Jamshid Faraji
2017-05-01
Full Text Available In a continuously stressful environment, the effects of recurrent prenatal stress (PS may accumulate across generations and alter stress vulnerability and resilience. Here, we report in female rats that a family history of recurrent ancestral PS facilitates certain aspects of movement performance, and that these benefits are abolished by the experience of a second hit, induced by a silent ischemia during adulthood. Female F4-generation rats with and without a family history of cumulative multigenerational PS (MPS were tested for skilled motor function before and after the induction of a minor ischemic insult by endothelin-1 infusion into the primary motor cortex. MPS resulted in improved skilled motor abilities and blunted hypothalamic-pituitary-adrenal (HPA axis function compared to non-stressed rats. Deep sequencing revealed downregulation of miR-708 in MPS rats along with upregulation of its predicted target genes Mapk10 and Rasd2. Through miR-708 stress may regulate mitogen-activated protein kinase (MAPK pathway activity. Hair trace elemental analysis revealed an increased Na/K ratio, which suggests a chronic shift in adrenal gland function. The ischemic lesion activated the HPA axis in MPS rats only; the lesion, however, abolished the advantage of MPS in skilled reaching. The findings indicate that MPS generates adaptive flexibility in movement, which is challenged by a second stressor, such as a neuropathological condition. Thus, a second “hit” by a stressor may limit behavioral flexibility and neural plasticity associated with ancestral stress.
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Energy Technology Data Exchange (ETDEWEB)
Wang, Shih-Yu. [Iowa State University, Department of Geological and Atmospheric Sciences, Ames, IA (United States); Utah State University, Utah Climate Center, Logan, UT (United States); Chen, Tsing-Chang [Iowa State University, Department of Geological and Atmospheric Sciences, Ames, IA (United States); Takle, Eugene S. [Iowa State University, Department of Geological and Atmospheric Sciences, Ames, IA (United States); Iowa State University, Department of Agronomy, Ames, IA (United States)
2011-04-15
Propagating convective storms across the US northern plains are often coupled with preexisting midtropospheric perturbations (MPs) initiated over the Rocky Mountains. A companion study (Part I) notes that such MPs occur most commonly at 12 UTC (early morning) and 00 UTC (late afternoon). Using a regional reanalysis and a general circulation model (GCM), this study investigates how such a bimodal distribution of the MP frequency is formed. The results point to two possible mechanisms working together while each has a different timing in terms of maximum effect. The diurnal evolutions between the midtropospheric flows over the Rockies and over the Great Plains are nearly out-of-phase due to inertial oscillation. During the nighttime, the westerly flows at 700-500 mb over the Rockies intensify while flows at the same level over the Great Plains turn easterly. These two flows converge over the eastern Rockies and induce cyclonic vorticity through vortex stretching. After sunrise, the convergence dissipates and the cyclonic vorticity is redistributed by horizontal vorticity advection, moving it downstream. This process creates a climatological zonally propagating vorticity signal which, in turn, facilitates the early-morning MP genesis at 12 UTC. The analysis also reveals marked dynamic instability conducive to subsynoptic-scale disturbances in the midtroposphere over the Rockies. Strong meridional temperature gradients appear over the north-facing slopes of the Rockies due to terrain heating to the south and the presence of cooler air to the north. This feature, along with persistent vertical shear, creates a Charney-Stern type of instability (i.e. sign changes of the meridional potential vorticity gradient). Meanwhile, the development of terrain boundary layer reduces the Rossby deformation radius which, subsequently, enhances the likelihood for baroclinic short waves. Such effects are most pronounced in the late afternoon and therefore are supportive to the MP
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Fire Regime and Ecosystem Effects of Climate-driven Changes in Rocky Mountains Hydrology
Westerling, A. L.; Das, T.; Lubetkin, K.; Romme, W.; Ryan, M. G.; Smithwick, E. A.; Turner, M.
2009-12-01
Western US Forest managers face more wildfires than ever before, and it is increasingly imperative to anticipate the consequences of this trend. Large fires in the northern Rocky Mountains have increased in association with warmer temperatures, earlier snowmelt, and longer fire seasons (1), and this trend is likely to continue with global warming (2). Increased wildfire occurrence is already a concern shared by managers from many federal land-management agencies (3). However, new analyses for the western US suggest that future climate could diverge even more rapidly from past climate than previously suggested. Current model projections suggest end-of-century hydroclimatic conditions like those of 1988 (the year of the well-known Yellowstone Fires) may represent close to the average year rather than an extreme year. The consequences of a shift of this magnitude for the fire regime, post-fire succession and carbon (C) balance of western forest ecosystems are well beyond what scientists have explored to date, and may fundamentally change the potential of western forests to sequester atmospheric C. We link hydroclimatic extremes (spring and summer temperature and cumulative water-year moisture deficit) to extreme fire years in northern Rockies forests, using large forest fire histories and 1/8-degree gridded historical hydrologic simulations (1950 - 2005) (4) forced with historical gridded temperature and precipitation (5). The frequency of extremes in hydroclimate associated with historic severe fire years in the northern Rocky Mountains is compared to those projected under a range of climate change projections, using global climate model runs for the A2 and B1 emissions pathways for three global climate models (NCAR PCM1, GFDL CM2.1, CNRM CM3). Coarse-scale climatic variables are downscaled to a 1/8 degree grid and used to force hydrologic simulations (6, 7). We will present preliminary results using these hydrologic simulations to model spatially explicit annual
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Immune Thrombocytopenia as a Consequence of Rocky Mountain Spotted Fever.
Baldeo, Cherisse; Seegobin, Karan; Zuberi, Lara
2017-01-01
Primary immune thrombocytopenia (ITP) - also called idiopathic thrombocytopenic purpura or immune thrombocytopenic purpura - is an acquired thrombocytopenia caused by autoantibodies against platelet antigens. It is one of the more common causes of thrombocytopenia in otherwise asymptomatic adults. Rocky Mountain spotted fever (RMSF) is a potentially lethal, but curable, tick-borne disease. We present a case of ITP that was triggered by RMSF.
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Directory of Open Access Journals (Sweden)
Edgardo Londoño-Cruz
2014-02-01
Full Text Available Organisms found on rocky shores must endure harsh environmental conditions during tidal changes but scientific studies on tropical rocky shores are scarce, particularly in Colombian shores. Here we describe the spatial distribution of macroinvertebrates associated to the intertidal rocky ecosystems of Gorgona Island, Colombia (Tropical Eastern Pacific. Sampling was carried out in four localities around the Island: La Ventana and La Camaronera (sampled during October 2010 and La Mancora and El Muelle (sampled during March 2011. Two methodologies were used: rapid ecological assessments for qualitative data and quadrats for quantitative data. The richness, abundance, diversity (Shannon-Wiener H’, and evenness (Pielou J’ of macroinvertebrates were determined for and compared between, using one way ANOVA, each locality and the three intertidal zones of La Ventana (see methods. One hundred twenty-one species of macroinvertebrates were found during the sampling period. In all localities, Mollusca was the richest and most abundant taxon (46% of the species and 59% of the individuals, followed by Crustacea (32% of the species and 33% of the individuals. The other groups accounted for the remaining 22% of the richness and 8% of the abundance. Several studies have demonstrated that mollusks and crustaceans are the richest and most abundant taxa in marine benthic communities. Most of the abundant species found were herbivores. The species composition varied among zones. The results of dominant species for each zone are consistent with the ones observed in other tropical rocky intertidal shores. All response variables showed a decreasing pattern from the low to the high intertidal (in La Ventana. Post-hoc results indicated that the high intertidal, the zone with the harshest environmental conditions, had significantly lower values than the other two zones for all response variables. Comparisons between the low intertidal zones of the different localities
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A skull might lie: modelling ancestral ranges and diet from genes and shape of tree squirrels
Czech Academy of Sciences Publication Activity Database
Pečnerová, Patrícia; Moravec, Jiří C.; Martínková, Natália
2015-01-01
Roč. 64, č. 6 (2015), s. 1074-1088 ISSN 1063-5157 EU Projects: European Commission(XE) CZ.1.07/2.4.00/17.0138 Institutional support: RVO:68081766 Keywords : Sciurini * multilocus phylogeny * geometric morphometry * speciation * ancestral range reconstruction * diet modelling Subject RIV: EG - Zoology Impact factor: 8.225, year: 2015
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Cardona-Castro, Nora; Cortés, Edwin; Beltrán, Camilo; Romero, Marcela; Badel-Mogollón, Jaime E; Bedoya, Gabriel
2015-01-01
Recent reports have suggested that leprosy originated in Africa, extended to Asia and Europe, and arrived in the Americas during European colonization and the African slave trade. Due to colonization, the contemporary Colombian population is an admixture of Native-American, European and African ancestries. Because microorganisms are known to accompany humans during migrations, patterns of human migration can be traced by examining genomic changes in associated microbes. The current study analyzed 118 leprosy cases and 116 unrelated controls from two Colombian regions endemic for leprosy (Atlantic and Andean) in order to determine possible associations of leprosy with patient ancestral background (determined using 36 ancestry informative markers), Mycobacterium leprae genotype and/or patient geographical origin. We found significant differences between ancestral genetic composition. European components were predominant in Andean populations. In contrast, African components were higher in the Atlantic region. M. leprae genotypes were then analyzed for cluster associations and compared with the ancestral composition of leprosy patients. Two M. leprae principal clusters were found: haplotypes C54 and T45. Haplotype C54 associated with African origin and was more frequent in patients from the Atlantic region with a high African component. In contrast, haplotype T45 associated with European origin and was more frequent in Andean patients with a higher European component. These results suggest that the human and M. leprae genomes have co-existed since the African and European origins of the disease, with leprosy ultimately arriving in Colombia during colonization. Distinct M. leprae strains followed European and African settlement in the country and can be detected in contemporary Colombian populations.
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International Nuclear Information System (INIS)
Luo Xuqiang; Wang Shijie; Wang Chengyuan; Liang Yuhua; Liao Xinrong; Yang Hongyan
2011-01-01
Isotopic composition and spatial distribution characteristic of total nitrogen of the surficial soil in karst rocky desertification area, including different types, different grades and different disturbed modes karst rocky desertification within the same small catchment, which belong to the Wangjiazhai peak-cluster depression basin and located in Qingzhen City, Guizhou Province were discussed in this study. Results showed that δ 15 N values of total nitrogen in top soil in yellow soil area were mainly between +0.35‰ ∼ +6.82% with the average of +4.50‰, and between +2.70‰ ∼ +6.50‰ in black calcareous with the average of +4.27‰. In both yellow soil area and black calcareous area, there were no significant difference in the δ 15 N values of total nitrogen on sample lands of rocky desertification at different levels, different ways of interruption and different slope positions, and no obvious difference on the whole (P≤0.05), which is mainly due to the high habitat heterogeneity of karst area. (authors)
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The analysis of morphometric data on rocky mountain wolves and artic wolves using statistical method
Ammar Shafi, Muhammad; Saifullah Rusiman, Mohd; Hamzah, Nor Shamsidah Amir; Nor, Maria Elena; Ahmad, Noor’ani; Azia Hazida Mohamad Azmi, Nur; Latip, Muhammad Faez Ab; Hilmi Azman, Ahmad
2018-04-01
Morphometrics is a quantitative analysis depending on the shape and size of several specimens. Morphometric quantitative analyses are commonly used to analyse fossil record, shape and size of specimens and others. The aim of the study is to find the differences between rocky mountain wolves and arctic wolves based on gender. The sample utilised secondary data which included seven variables as independent variables and two dependent variables. Statistical modelling was used in the analysis such was the analysis of variance (ANOVA) and multivariate analysis of variance (MANOVA). The results showed there exist differentiating results between arctic wolves and rocky mountain wolves based on independent factors and gender.
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Rickettsia parkeri rickettsiosis and its clinical distinction from Rocky Mountain spotted fever.
Paddock, Christopher D; Finley, Richard W; Wright, Cynthia S; Robinson, Howard N; Schrodt, Barbara J; Lane, Carole C; Ekenna, Okechukwu; Blass, Mitchell A; Tamminga, Cynthia L; Ohl, Christopher A; McLellan, Susan L F; Goddard, Jerome; Holman, Robert C; Openshaw, John J; Sumner, John W; Zaki, Sherif R; Eremeeva, Marina E
2008-11-01
Rickettsia parkeri rickettsiosis, a recently identified spotted fever transmitted by the Gulf Coast tick (Amblyomma maculatum), was first described in 2004. We summarize the clinical and epidemiological features of 12 patients in the United States with confirmed or probable disease attributable to R. parkeri and comment on distinctions between R. parkeri rickettsiosis and other United States rickettsioses. Clinical specimens from patients in the United States who reside within the range of A. maculatum for whom an eschar or vesicular rash was described were evaluated by > or =1 laboratory assays at the Centers for Disease Control and Prevention (Atlanta, GA) to identify probable or confirmed infection with R. parkeri. During 1998-2007, clinical samples from 12 patients with illnesses epidemiologically and clinically compatible with R. parkeri rickettsiosis were submitted for diagnostic evaluation. Using indirect immunofluorescence antibody assays, immunohistochemistry, polymerase chain reaction assays, and cell culture isolation, we identified 6 confirmed and 6 probable cases of infection with R. parkeri. The aggregate clinical characteristics of these patients revealed a disease similar to but less severe than classically described Rocky Mountain spotted fever. Closer attention to the distinct clinical features of the various spotted fever syndromes that exist in the United States and other countries of the Western hemisphere, coupled with more frequent use of specific confirmatory assays, may unveil several unique diseases that have been identified collectively as Rocky Mountain spotted fever during the past century. Accurate assessments of these distinct infections will ultimately provide a more valid description of the currently recognized distribution, incidence, and case-fatality rate of Rocky Mountain spotted fever.
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Portrait of a Cult Film Audience: "The Rocky Horror Picture Show."
Austin, Bruce A.
1981-01-01
Examines the phenomenon of the cult film and the characteristics of the audiences of the "Rocky Horror Picture Show." Suggests that the preparation, waiting, and finally the active participation in the viewing of the film itself appear to be part of a group ritual which characterizes the cult film as an event. (JMF)
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Soreghan, M. J.; Soreghan, G. S.
2017-12-01
The Permo-Pennsylvanian was characterized by intense orogenesis associated with Pangaean assembly, and profound climate shifts as earth transitioned from full icehouse conditions in the Pennsylvanian-early Permian to collapse into greenhouse conditions by latest Permian time. The modern U.S. Midcontinent was part of equatorial western Pangaea (North America) sandwiched between a continental-scale orogenic zone to the east and south (Appalachian-Ouachita-Marathon orogenic belt) and a series of basement-cored, intra-plate uplifts along western Pangaea (Ancestral Rocky Mountains). Here, we present a compilation of detrital zircon geochronology data from the Permo-Pennsylvanian of the Midcontinent as well as coeval strata of the east and west to explore sediment dispersal and potential tectonic and climatic influences on these provenance signatures. Zircon provenance data come from mostly eolian and fluvial silt- and sandstones of Early Pennsylvanian through Mid Permian age, although some data include marine sandstones. Our new data were acquired by LA-ICPMS at the University of Arizona Laserchron, and predominant age groups include >2500 Ma (Archean), 1600-1800 Ma (Yavapai-Matzatzal), 1300-900 Ma (Grenville), 790-570 Ma (Neoproterozoic), and 480-360 (E-M Paleozoic). However, the relative distributions of these populations exhibit distinctive temporal differences, especially across the Pennsylvanian-Permian boundary, but also spatially in comparison to published data from the Appalachian-Ouachita-Marathon basin, Ancestral Rocky Mountain basins, and the western Pangaean margin. Although the Central Pangaean Mountains, and in particular the Grenville-age basement rocks, were a dominant source of sediment to the Midcontinent, the data suggest an abrupt introduction of Neoproterozoic zircons in the early Permian. This signature also appears within the Ancestral Rocky Mountains region, but is rare along the western margin and the Appalachian basin in the early Permian. This
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Stabilization of mixed waste - Rocky Flats solar ponds
International Nuclear Information System (INIS)
Bittner, T.A.; Mathew, S.A.; Henderson, W.C.
1993-01-01
Among the wastes that require disposal as part of the Department of Energy's (DOE's) Environmental Restoration Program are large amounts of contaminated sludge and inorganic wastes. Halliburton NUS Corporation was awarded a contract by EG ampersand G Rocky Flats in March 1991 to stabilize mixed waste sludge contained in five solar evaporator ponds and to reprocess billets of solidified waste called Pondcrete and Saltcrete at DOE's Rocky Flats Plant. The scope of the project consists of waste characterization and treatability studies for process development, followed by design, construction and operation of various process trains to remediate different waste forms ranging from solid Pondcrete/Saltcrete blocks to aqueous brine solutions. One of the significant advances made was the development of a durable and certifiable stabilization formulation capable of treating concentrated nitrate solution wastes. The project uses high-volume grout mixing and pumping technologies with process control techniques that accommodate the heterogeneity of the wastes. To comply with all relevant environmental regulations and to provide a safe working atmosphere for plant personnel, Halliburton NUS designed process trains such that all emissions were eliminated during the remediation process. Personnel protection equipment requirements have been downgraded due to safeguards incorporated in the design. The technical and regulatory issues that were encountered would be typical of stabilization efforts underway at other DOE sites. Thus the lessons learned and concepts developed can be expected to have widespread application
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Jackson, Hazel; Strubbe, Diederik; Tollington, Simon; Prys-Jones, Robert; Matthysen, Erik; Groombridge, Jim J
2015-08-01
Invasive species present a major threat to global biodiversity. Understanding genetic patterns and evolutionary processes that reinforce successful establishment is paramount for elucidating mechanisms underlying biological invasions. Among birds, the ring-necked parakeet (Psittacula krameri) is one of the most successful invasive species, established in over 35 countries. However, little is known about the evolutionary genetic origins of this species and what population genetic signatures tell us about patterns of invasion. We reveal the ancestral origins of populations across the invasive range and explore the potential influence of climate and propagule pressure from the pet trade on observed genetic patterns. Ring-necked parakeet samples representing the ancestral native range (n = 96) were collected from museum specimens, and modern samples from the invasive range (n = 855) were gathered from across Europe, Mauritius and Seychelles, and sequenced for two mitochondrial DNA markers comprising 868 bp of cytochrome b and control region, and genotyped at 10 microsatellite loci. Invasive populations comprise birds that originate predominantly from Pakistan and northern areas of India. Haplotypes associated with more northerly distribution limits in the ancestral native range were more prevalent in invasive populations in Europe, and the predominance of Asian haplotypes in Europe is consistent with the higher number of Asian birds transported by the pet trade outside the native range. Successful establishment of invasive species is likely to be underpinned by a combination of environmental and anthropogenic influences. © 2015 John Wiley & Sons Ltd.
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Vitrification of plutonium at Rocky Flats the argument for a pilot plant
Energy Technology Data Exchange (ETDEWEB)
Moore, L. [Rocky Mountain Peace Center, Boulder, CO (United States)
1996-05-01
Current plans for stabilizing and storing the plutonium at Rocky Flats Plant fail to put the material in a form suitable for disposition and resistant to proliferation. Vitrification should be considered as an alternate technology. The vitrification should begin with a small-scale pilot plant.
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A preliminary survey of the cichlid fishes of rocky habitats in Lake ...
African Journals Online (AJOL)
given on some of the other rocky shore fishes particularly in the genus Cyrtocara. ... biology, numerical abundance and distribution. Indeed, ... some species have very limited distributions. Exporters of ..... Fishelson (1974) to describe the diversity of fishes at par- ..... zooplankton, phytoplankton, benthic Invertebrata, fish fry.
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Cobo-Viveros, Alba Marina; Cantera-Kintz, Jaime Ricardo
2015-10-01
Bioerosion is an important process that destroys coastal rocks in the tropics. However, the rates at which this process occurs, the organisms involved, and the dynamics of rocky cliffs in tropical latitudes have been less studied than in temperate and subtropical latitudes. To contribute to the knowledge of the bioerosion process in rocky cliffs on the Pacific coast of Colombia (Eastern Tropical Pacific) we compared: 1) boring volume, 2) grain size distribution of the rocks, and 3) rock porosity, across three tidal zones of two cliffs with different wave exposure; these factors were related to the bioeroding community found. We observed that cliffs that were not exposed to wave action (IC, internal cliffs) exhibited high percentages of clays in their grain size composition, and a greater porosity (47.62%) and perforation (15.86%) than exposed cliffs (EC, external cliffs). However, IC also exhibited less diversity and abundance of bioeroding species (22 species and 314 individuals, respectively) compared to the values found in EC (41.11%, 14.34%, 32 and 491, respectively). The most abundant bioeroders were Petrolisthes zacae in IC and Pachygrapsus transversus in EC. Our findings show that the tidal zone is the common factor controlling bioerosion on both cliffs; in addition to the abundance of bioeroders on IC and the number of bioeroding species on EC. The integration of geology, sedimentology, and biology allows us to obtain a more comprehensive view of the patterns and trends in the process of bioerosion.
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Trends in clinical diagnoses of Rocky Mountain spotted fever among American Indians, 2001-2008.
Folkema, Arianne M; Holman, Robert C; McQuiston, Jennifer H; Cheek, James E
2012-01-01
American Indians are at greater risk for Rocky Mountain spotted fever (RMSF) than the general U.S. population. The epidemiology of RMSF among American Indians was examined by using Indian Health Service inpatient and outpatient records with an RMSF International Classification of Diseases, Ninth Revision, Clinical Modification diagnosis. For 2001-2008, 958 American Indian patients with clinical diagnoses of RMSF were reported. The average annual RMSF incidence was 94.6 per 1,000,000 persons, with a significant increasing incidence trend from 24.2 in 2001 to 139.4 in 2008 (P = 0.006). Most (89%) RMSF hospital visits occurred in the Southern Plains and Southwest regions, where the average annual incidence rates were 277.2 and 49.4, respectively. Only the Southwest region had a significant increasing incidence trend (P = 0.005), likely linked to the emergence of brown dog ticks as an RMSF vector in eastern Arizona. It is important to continue monitoring RMSF infection to inform public health interventions that target RMSF reduction in high-risk populations.
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Directory of Open Access Journals (Sweden)
Jia-Yu Chen
2015-07-01
Full Text Available While some human-specific protein-coding genes have been proposed to originate from ancestral lncRNAs, the transition process remains poorly understood. Here we identified 64 hominoid-specific de novo genes and report a mechanism for the origination of functional de novo proteins from ancestral lncRNAs with precise splicing structures and specific tissue expression profiles. Whole-genome sequencing of dozens of rhesus macaque animals revealed that these lncRNAs are generally not more selectively constrained than other lncRNA loci. The existence of these newly-originated de novo proteins is also not beyond anticipation under neutral expectation, as they generally have longer theoretical lifespan than their current age, due to their GC-rich sequence property enabling stable ORFs with lower chance of non-sense mutations. Interestingly, although the emergence and retention of these de novo genes are likely driven by neutral forces, population genetics study in 67 human individuals and 82 macaque animals revealed signatures of purifying selection on these genes specifically in human population, indicating a proportion of these newly-originated proteins are already functional in human. We thus propose a mechanism for creation of functional de novo proteins from ancestral lncRNAs during the primate evolution, which may contribute to human-specific genetic novelties by taking advantage of existed genomic contexts.
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Hechemy, K E; Stevens, R W; Sasowski, S; Michaelson, E E; Casper, E A; Philip, R N
1979-01-01
Only 4.2% of 284 single specimens and 17.6% of 51 pairs of sera reactive in Weil-Felix agglutination tests for Rocky Mountain spotted fever were confirmed by a specific Rickettsia rickettsii microimmunofluorescence test. PMID:107194
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Griffith, Oliver W; Blackburn, Daniel G; Brandley, Matthew C; Van Dyke, James U; Whittington, Camilla M; Thompson, Michael B
2015-09-01
To understand evolutionary transformations it is necessary to identify the character states of extinct ancestors. Ancestral character state reconstruction is inherently difficult because it requires an accurate phylogeny, character state data, and a statistical model of transition rates and is fundamentally constrained by missing data such as extinct taxa. We argue that model based ancestral character state reconstruction should be used to generate hypotheses but should not be considered an analytical endpoint. Using the evolution of viviparity and reversals to oviparity in squamates as a case study, we show how anatomical, physiological, and ecological data can be used to evaluate hypotheses about evolutionary transitions. The evolution of squamate viviparity requires changes to the timing of reproductive events and the successive loss of features responsible for building an eggshell. A reversal to oviparity requires that those lost traits re-evolve. We argue that the re-evolution of oviparity is inherently more difficult than the reverse. We outline how the inviability of intermediate phenotypes might present physiological barriers to reversals from viviparity to oviparity. Finally, we show that ecological data supports an oviparous ancestral state for squamates and multiple transitions to viviparity. In summary, we conclude that the first squamates were oviparous, that frequent transitions to viviparity have occurred, and that reversals to oviparity in viviparous lineages either have not occurred or are exceedingly rare. As this evidence supports conclusions that differ from previous ancestral state reconstructions, our paper highlights the importance of incorporating biological evidence to evaluate model-generated hypotheses. © 2015 Wiley Periodicals, Inc.
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Integrated wastewater management planning for DOE's Rocky Flats Environmental Technology Site
International Nuclear Information System (INIS)
Hopkins, J.; Barthel, J.; Wheeler, M.; Conroy, K.
1996-01-01
Rocky Mountain Remediation Services, L.L.C. (RMRS), jointly formed by Morrison Knudsen Corporation and BNFL Inc., provides international experience in the nuclear, environmental, waste management, decontamination and decommissioning (D ampersand D) , and project management industry. The company is currently the environmental restoration, waste management, and D ampersand D subcontractor for Kaiser-Hill Company at the Rocky Flats Environmental Technology Site (RFETS). RMRS offers unique solutions and state-of-the-art technology to assist in resolving the issues that face industries today. RMRS has been working on methods to improve cost savings recognized at RFETS, through application of unique technologies and process engineering. RMRS prepared and is implementing a strategy that focused on identifying an approach to improve cost savings in current wastewater treatment systems and to define a low-cost, safe and versatile wastewater treatment system for the future. Development of this strategy, was targeted by Department of Energy (DOE) Headquarters, DOE Rocky Flats Field Office and Kaiser-Hill as a ''Project Breakthrough'' where old concepts were thrown out the door and the project goals and objectives were developed from the groundup. The objectives of the strategy developed in a project break through session with DOE included lower lifecycle costs, shutdown of one of two buildings at RFETS, Building 374 or Building 774, reduced government capital investment, and support of site closure program goals, identified as the site's Accelerated Site Action Plan (ASAP). The recommended option allows for removal of water treatment functions from Building 374, the existing process wastewater treatment facility. This option affords the lowest capital cost, lowest unit operating cost, lowest technical management risk, greatest support of ASAP phasing and provides the greatest flexibility for design with unforeseen future needs
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Large-scale spatial distribution patterns of gastropod assemblages in rocky shores.
Directory of Open Access Journals (Sweden)
Patricia Miloslavich
Full Text Available Gastropod assemblages from nearshore rocky habitats were studied over large spatial scales to (1 describe broad-scale patterns in assemblage composition, including patterns by feeding modes, (2 identify latitudinal pattern of biodiversity, i.e., richness and abundance of gastropods and/or regional hotspots, and (3 identify potential environmental and anthropogenic drivers of these assemblages. Gastropods were sampled from 45 sites distributed within 12 Large Marine Ecosystem regions (LME following the NaGISA (Natural Geography in Shore Areas standard protocol (www.nagisa.coml.org. A total of 393 gastropod taxa from 87 families were collected. Eight of these families (9.2% appeared in four or more different LMEs. Among these, the Littorinidae was the most widely distributed (8 LMEs followed by the Trochidae and the Columbellidae (6 LMEs. In all regions, assemblages were dominated by few species, the most diverse and abundant of which were herbivores. No latitudinal gradients were evident in relation to species richness or densities among sampling sites. Highest diversity was found in the Mediterranean and in the Gulf of Alaska, while highest densities were found at different latitudes and represented by few species within one genus (e.g. Afrolittorina in the Agulhas Current, Littorina in the Scotian Shelf, and Lacuna in the Gulf of Alaska. No significant correlation was found between species composition and environmental variables (r≤0.355, p>0.05. Contributing variables to this low correlation included invasive species, inorganic pollution, SST anomalies, and chlorophyll-a anomalies. Despite data limitations in this study which restrict conclusions in a global context, this work represents the first effort to sample gastropod biodiversity on rocky shores using a standardized protocol across a wide scale. Our results will generate more work to build global databases allowing for large-scale diversity comparisons of rocky intertidal assemblages.
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Nanus, Leora; Campbell, Donald H.; Lehmann, Christopher M. B.; Mast, M. Alisa
2018-03-01
Variation in source areas and source types of atmospheric nitrogen (N) deposition to high-elevation ecosystems in the Rocky Mountains were evaluated using spatially and temporally distributed N isotope data from atmospheric deposition networks for 1995-2016. This unique dataset links N in wet deposition and snowpack to mobile and stationary emissions sources, and enhances understanding of the impacts of anthropogenic activities and environmental policies that mitigate effects of accelerated N cycling across the Rocky Mountain region. δ15N-NO3- at 50 U.S. Geological Survey Rocky Mountain Snowpack (Snowpack) sites ranged from -3.3‰ to +6.5‰, with a mean value of +1.4‰. At 15 National Atmospheric Deposition Program (NADP)/National Trends Network wet deposition (NADP Wetfall) sites, summer δ15N-NO3- is significantly lower ranging from -7.6‰ to -1.3‰ while winter δ15N-NO3- ranges from -2.6‰ to +5.5‰, with a mean value of +0.7‰ during the cool season. The strong seasonal difference in NADP Wetfall δ15N-NO3- is due in part to variation in the proportion of N originating from source regions at different times of the year due to seasonal changes in weather patterns. Snowpack NO3- and δ15N-NO3- are significantly related to NADP Wetfall (fall and winter) suggesting that bulk snowpack samples provide a reliable estimate at high elevations. Spatial trends show higher NO3- concentrations and δ15N-NO3- in the Southern Rocky Mountains located near larger anthropogenic N emission sources compared to the Northern Rocky Mountains. NADP Wetfall δ15N-NH4+ ranged from -10‰ to 0‰, with no observed spatial pattern. However, the lowest δ15N-NH4+(-9‰), and the highest NH4+ concentration (35 μeq/L) were observed at a Utah site dominated by local agricultural activities, whereas the higher δ15N-NH4+ observed in Colorado and Wyoming are likely due to mixed sources, including fossil fuel combustion and agricultural sources. These findings show spatial and
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Nanus, Leora; Campbell, Donald H.; Lehmann, Christopher M.B.; Mast, M. Alisa
2018-01-01
Variation in source areas and source types of atmospheric nitrogen (N) deposition to high-elevation ecosystems in the Rocky Mountains were evaluated using spatially and temporally distributed N isotope data from atmospheric deposition networks for 1995-2016. This unique dataset links N in wet deposition and snowpack to mobile and stationary emissions sources, and enhances understanding of the impacts of anthropogenic activities and environmental policies that mitigate effects of accelerated N cycling across the Rocky Mountain region. δ15N−NO3− at 50 U.S. Geological Survey Rocky Mountain Snowpack (Snowpack) sites ranged from −3.3‰ to +6.5‰, with a mean value of +1.4‰. At 15 National Atmospheric Deposition Program (NADP)/National Trends Network wet deposition (NADP Wetfall) sites, summer δ15N−NO3− is significantly lower ranging from −7.6‰ to −1.3‰ while winter δ15N−NO3− ranges from −2.6‰ to +5.5‰, with a mean value of +0.7‰ during the cool season. The strong seasonal difference in NADP Wetfall δ15N−NO3− is due in part to variation in the proportion of N originating from source regions at different times of the year due to seasonal changes in weather patterns. Snowpack NO3− and δ15N−NO3− are significantly related to NADP Wetfall (fall and winter) suggesting that bulk snowpack samples provide a reliable estimate at high elevations. Spatial trends show higher NO3−concentrations and δ15N−NO3− in the Southern Rocky Mountains located near larger anthropogenic N emission sources compared to the Northern Rocky Mountains. NADP Wetfall δ15N−NH4+ ranged from −10‰ to 0‰, with no observed spatial pattern. However, the lowest δ15N−NH4+(−9‰), and the highest NH4+ concentration (35 μeq/L) were observed at a Utah site dominated by local agricultural activities, whereas the higher δ15N−NH4+observed in Colorado and Wyoming are likely due to mixed sources, including fossil fuel combustion and
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Logging residues in principal forest types of the Northern Rocky Mountains
Robert E. Benson; Joyce A. Schlieter
1980-01-01
An estimated 466 million ft 3 of forest residue material (nonmerchantable, 3 inches diameter and larger) is generated annually in the Northern Rocky Mountains (Montana, Idaho, Wyoming). Extensive studies of residues in the major forest types show a considerable portion is suited for various products. The lodgepole pine type has the greatest potential for increased...
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Immune Thrombocytopenia as a Consequence of Rocky Mountain Spotted Fever
Baldeo, Cherisse; Seegobin, Karan; Zuberi, Lara
2017-01-01
Primary immune thrombocytopenia (ITP) – also called idiopathic thrombocytopenic purpura or immune thrombocytopenic purpura – is an acquired thrombocytopenia caused by autoantibodies against platelet antigens. It is one of the more common causes of thrombocytopenia in otherwise asymptomatic adults. Rocky Mountain spotted fever (RMSF) is a potentially lethal, but curable, tick-borne disease. We present a case of ITP that was triggered by RMSF.
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Immune Thrombocytopenia as a Consequence of Rocky Mountain Spotted Fever
Directory of Open Access Journals (Sweden)
Cherisse Baldeo
2017-10-01
Full Text Available Primary immune thrombocytopenia (ITP – also called idiopathic thrombocytopenic purpura or immune thrombocytopenic purpura – is an acquired thrombocytopenia caused by autoantibodies against platelet antigens. It is one of the more common causes of thrombocytopenia in otherwise asymptomatic adults. Rocky Mountain spotted fever (RMSF is a potentially lethal, but curable, tick-borne disease. We present a case of ITP that was triggered by RMSF.
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DEFF Research Database (Denmark)
Natarajan, Chandrasekhar; Kumar, Amit; Moriyama, Hideaki
2016-01-01
the functional effects of causative mutations on the genetic background in which they actually occurred during evolution (i.e., in the BHG ancestor). An alternative ‘vertical’ approach is to reconstruct and resurrect ancestral proteins to test the effects of historical mutations on the genetic background...
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Community Surveys Low Dose Radiation. Fernald, Ohio and Rocky Flats, Colorado
Mertz, C K; Johnson, S; MacGregor, D G; Satterfield, T
2002-01-01
This report is intended to present a basic description of the data from the two community surveys and to document the text of the questions; the methods used for the survey data collection; and a brief overview of the results. Completed surveys were conducted at local communities near the Rocky Flats, Colorado and the Fernald, Ohio sites; no survey was conducted for the Brookhaven, New York site. Fernald. The Fernald sample was randomly selected from 98% of all potential residential telephones in the townships of Ross, Morgan, and Crosby. The only telephone exchanges not used for the Fernald study had 4%, or fewer, of the holders of the telephone numbers actually living in either of the three target townships. Surveying started on July 24, 2001 and finished on August 30, 2001. A total of 399 completed interviews were obtained resulting in a CASRO response rate of 41.8%. The average length of an interview was 16.5 minutes. Rocky Flats. The sample was randomly selected from all potential residential telephones ...
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Rocky Mountain spotted fever acquired in Florida, 1973-83.
Sacks, J J; Janowski, H T
1985-01-01
From 1973 to 1983, 49 Florida residents were reported with confirmed Rocky Mountain spotted fever (RMSF), 25 of whom were considered to have had Florida-acquired disease. Although there was no history of tick exposure for six of these 25 persons, all had contact with dogs or outdoor activities during the incubation period. The tick vectors of RMSF are widely distributed throughout Florida. We conclude that RMSF, although rare in Florida, can be acquired in the state. PMID:4061716
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Treatment of pond sludge at the Rocky Flats Plant
International Nuclear Information System (INIS)
Wienand, J.; Tyler, R.; Baldwin, C.
1992-01-01
The treatment of low-level radioactive/hazardous materials sludges from five inactive solar evaporation settling ponds at the Rocky Flats Plant is discussed. The paper presents information on the following topics: history of the ponds; previous pond cleanout activities; current approach to the problem with respect to water management, sludge management, regulatory actions, and disposal; and future processing technology needs in the areas of polymer solidification, microwave solidification, joule-heated glass melters, and advanced technology incineration
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The marriage of RCRA and CERCLA at the Rocky Flats Environmental Technology Site
International Nuclear Information System (INIS)
Shelton, D.C.; Brooks, L.M.
1998-01-01
A key goal of the Rocky Flats Cleanup Agreement (RFCA) signed in July of 1996 was to provide a seamless marriage of the Resource Conservation and Recovery Act (RCRA) (and other media specific programs) and the Comprehensive Environmental Response, Compensation and Liability Act (CERCLA) and the implementing agencies of each. This paper examines the two years since the signing of RFCA and identifies the successes, failures, and stresses of the marriage. RFCA has provided an excellent vehicle for regulatory and substantive progress at the Department of Energy's Rocky Flats facility. The key for a fully successful marriage is to build on the accomplishments to date and to continually improve the internal and external systems and relationships. To date, the parties can be proud of both the substantial accomplishment of substantive environmental work and the regulatory systems that have enabled the work
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/sup 239/Pu contamination in snakes inhabiting the Rocky Flats Plant site
Energy Technology Data Exchange (ETDEWEB)
Geiger, R.A.; Winsor, T.F.
1975-01-01
For approximately four years studies have been under way at the Rocky Flats plant to determine contamination patterns and concentrations of Pu in the biota. Contamination of the Rocky Flats environs has resulted from at least three incidents, a September 1957 fire, a May 1969 fire, and leaking barrels containing plutonium-laden cutting oil. The latter incident was considered by far the major source of the plutonium contamination. Results are reported from a study conducted to determine whether snake tissues of the area contained detectable amounts of /sup 239/Pu and, if so, at what concentrations. Eastern yellow-bellied racers (Coluber constrictor flaviventris, bullsnakes (Pituophis melanoleucus sayi, and prairie rattlesnakes (Crotalus viridis viridis, were collected for /sup 239/Pu bioassay of lung, liver, and bone tissues. Snakes were captured using drift fences terminating in funnel traps and by opportunistic sampling. Results led to the conclusion that snakes are not an important organism in the redistribution of /sup 239/Pu. (CH)
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Directory of Open Access Journals (Sweden)
Jeremy T Claisse
Full Text Available Kelp Bass (Paralabrax clathratus and California Sheephead (Semicossyphus pulcher are economically and ecologically valuable rocky reef fishes in southern California, making them likely indicator species for evaluating resource management actions. Multiple spatial datasets, aerial and satellite photography, underwater observations and expert judgment were used to produce a comprehensive map of nearshore natural rocky reef habitat for the Santa Monica Bay region (California, USA. It was then used to examine the relative contribution of individual reefs to a regional estimate of abundance and reproductive potential of the focal species. For the reefs surveyed for fishes (i.e. 18 out of the 22 in the region, comprising 82% the natural rocky reef habitat 30% was produced from a relatively small proportion of the regional reef area (c. 10%. Natural nearshore rocky reefs make up only 11% of the area in the newly designated MPAs in this region, but results provide some optimism that regional fisheries could benefit through an increase in overall reproductive output, if adequate increases in size structure of targeted species are realized.
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Seasonal Patterns of Dry Deposition at a High-Elevation Site in the Colorado Rocky Mountains
Oldani, Kaley M.; Mladenov, Natalie; Williams, Mark W.; Campbell, Cari M.; Lipson, David A.
2017-10-01
In the Colorado Rocky Mountains, high-elevation barren soils are deficient in carbon (C) and phosphorus (P) and enriched in nitrogen (N). The seasonal variability of dry deposition and its contributions to alpine elemental budgets is critical to understanding how dry deposition influences biogeochemical cycling in high-elevation environments. In this 2 year study, we evaluated dry and wet deposition inputs to the Niwot Ridge Long Term Ecological Research (NWT LTER) site in the Colorado Rocky Mountains. The total organic C flux in wet + dry (including soluble and particulate C) deposition was >30 kg C ha-1 yr-1 and represents a substantial input for this C-limited environment. Our side-by-side comparison of dry deposition collectors with and without marble insert indicated that the insert improved retention of dry deposition by 28%. Annual average dry deposition fluxes of water-soluble organic carbon (4.25 kg C ha-1 yr-1) and other water-soluble constituents, including ammonium (0.16 kg NH4+ha-1 yr-1), nitrate (1.99 kg NO3- ha-1 yr-1), phosphate (0.08 kg PO43- ha-1 yr-1), and sulfate (1.20 kg SO42- ha-1 yr-1), were comparable to those in wet deposition, with highest values measured in the summer. Backward trajectory analyses implicate air masses passing through the arid west and Four Corners, USA, as dominant source areas for dry deposition, especially in spring months. Synchronous temporal patterns of deposition observed at the NWT LTER site and a distant Rocky Mountain National Park Clean Air Status and Trends Network site indicate that seasonal dry deposition patterns are regional phenomena with important implications for the larger Rocky Mountain region.
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Geology of uranium deposits in the southern part of the Rocky Mountain province of Colorado
International Nuclear Information System (INIS)
Malan, R.C.
1983-07-01
This report summarizes the geology of uranium deposits in the southern part of the Rocky Mountains of Colorado, an area of about 20,000 square miles. In January 1966, combined ore reserves and ore production at 28 uranium deposits were about 685,000 tons of ore averaging 0.24 percent U 3 O 8 (3.32 million pounds U 3 O 8 ). About half of these deposits each contain <1,000 tons of ore. The two largest deposits, the Pitch in the Marshall Pass locality southwest of Salida and the T-1 in the Cochetopa locality southeast of Gunnison, account for about 90 percent of all production and available reserves. The probability in excellent for major expansion of reserves in Marshall Pass and is favorable at a few other vein localities. There are six types of uranium deposits, and there were at least four ages of emplacement of these deposits in the southern part of the Colorado Rockies. There are eight types of host rocks of eight different ages. Veins and stratiform deposits each account for about 40 percent of the total number of deposits, but the veins of early and middle Tertiary age account for nearly all of the total reserves plus production. The remaining 20 percent of the deposits include uraniferous pegmatites, irregular disseminations in porphyry, and other less important types. The wall rocks at the large Tertiary vein deposits in the southern part of the Rocky Mountains of Colorado are Paleozoic and Mesozoic sedimentary rocks, whereas Precambrian metamorphic wall rocks predominate at the large veins in the Front Range of the northern Colorado Rockies. Metallogenetic considerations and tectonic influences affecting the distribution of uranium in Colorado and in adjacent portions of the western United States are analyzed
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van der Pluijm, B.; Lynch, E. A.; Pana, D.; Yonkee, A.
2017-12-01
Recent Ar dating of clay-rich fault rock in the Canadian Rockies identified multiple orogenic pulses: Late Jurassic (163-146 Ma), Mid-Cretaceous (103-99 Ma), Late Cretaceous (76-72 Ma) and Eocene (54-52 Ma; Pana and van der Pluijm, GSAB 2015). New dating in the US Rockies combined with ages in the most frontal section along an Idaho-Wyoming transect show a remarkably similar age pattern: Meade Thrust, 108-102 Ma; (S)Absaroka Thrust, 73 Ma; Darby-Bear Thrust, 56-50 Ma. These radiometric fault ages in the US Rockies match field and tectono-stratigraphic predictions, analogues to those in the Canadian Rockies. Thus, a remarkably long (>1500km) lateral tract along the North American Sevier orogen is characterized by at least three major orogenic pulses that are structurally contiguous. These orogenic pulses are progressively younger in the direction of easterly thrust fault motion (toward cratonic interior) and are separated by long periods of relative tectonic quiescence. We interpret the extensive regional continuity of deformation pulses and tectonic quiescence along the Sevier Orogen as the result of three plate reorganization events in western North America since the Late Jurassic.
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Directory of Open Access Journals (Sweden)
Esperança Gacia
2007-06-01
Full Text Available Erosion problems in coastal zones are increasingly threatening Mediterranean shores. In tourist areas such as the Catalan coast, there has been an increasing demand for the construction of low crested structures (LCS to maintain beaches for recreational purposes. We studied the composition of the biota from three LCS and compared it with that of nearby natural rocky shores. Our purpose was to assess the composition of the communities growing on the LCS at a regional scale and to explore potential patterns of community composition in LCS in relation to the nature of the surrounding coast (i.e. sand or rocky shore, distance from natural hard-bottom communities and orientation of the blocks within the structure. The communities growing on the LCS were similar to those from nearby natural shores but the diversity and the number of taxa was always lower. Sixty to 95% of the species present on natural rocky shores grew on LCS, and differences in the number of taxa between the natural and the artificial substrates increased with increasing distances between them. On the Catalan coast, LCS act as impoverished rocky shores that never become natural ‘climax’ communities.
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International Nuclear Information System (INIS)
1995-01-01
This is the fourth in a series of seven volumes which constitute a guide to records of the Rocky Flats Plant useful for conducting health-related research. The primary purpose of Volume 4 is to describe record series pertaining to production and materials handling activities at the Department of Energy's (DOE) Rocky Flats Plant, now named the Rocky Flats Environmental Technology Site, near Denver, Colorado. History Associates Incorporated (HAI) prepared this guide as part of its work as the support services contractor for DOE's Epidemiologic Records Inventory Project. This introduction briefly describes the Epidemiologic Records Inventory Project and HAI's role in the project, provides a history of production and materials handling practices at Rocky Flats, and identifies organizations contributing to production and materials handling policies and activities. Other topics include the scope and arrangement of the guide and the organization to contact for access to these records
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Whole-community facilitation regulates biodiversity on Patagonian rocky shores.
Directory of Open Access Journals (Sweden)
Brian R Silliman
Full Text Available Understanding the factors that generate and maintain biodiversity is a central goal in ecology. While positive species interactions (i.e., facilitation have historically been underemphasized in ecological research, they are increasingly recognized as playing important roles in the evolution and maintenance of biodiversity. Dominant habitat-forming species (foundation species buffer environmental conditions and can therefore facilitate myriad associated species. Theory predicts that facilitation will be the dominant community-structuring force under harsh environmental conditions, where organisms depend on shelter for survival and predation is diminished. Wind-swept, arid Patagonian rocky shores are one of the most desiccating intertidal rocky shores ever studied, providing an opportunity to test this theory and elucidate the context-dependency of facilitation.Surveys across 2100 km of southern Argentinean coastline and experimental manipulations both supported theoretical predictions, with 43 out of 46 species in the animal assemblage obligated to living within the matrices of mussels for protection from potentially lethal desiccation stress and predators having no detectable impact on diversity.These results provide the first experimental support of long-standing theoretical predictions and reveal that in extreme climates, maintenance of whole-community diversity can be maintained by positive interactions that ameliorate physical stress. These findings have important conservation implications and emphasize that preserving foundation species should be a priority in remediating the biodiversity consequences of global climate change.
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Directory of Open Access Journals (Sweden)
Nora Cardona-Castro
Full Text Available Recent reports have suggested that leprosy originated in Africa, extended to Asia and Europe, and arrived in the Americas during European colonization and the African slave trade. Due to colonization, the contemporary Colombian population is an admixture of Native-American, European and African ancestries. Because microorganisms are known to accompany humans during migrations, patterns of human migration can be traced by examining genomic changes in associated microbes. The current study analyzed 118 leprosy cases and 116 unrelated controls from two Colombian regions endemic for leprosy (Atlantic and Andean in order to determine possible associations of leprosy with patient ancestral background (determined using 36 ancestry informative markers, Mycobacterium leprae genotype and/or patient geographical origin. We found significant differences between ancestral genetic composition. European components were predominant in Andean populations. In contrast, African components were higher in the Atlantic region. M. leprae genotypes were then analyzed for cluster associations and compared with the ancestral composition of leprosy patients. Two M. leprae principal clusters were found: haplotypes C54 and T45. Haplotype C54 associated with African origin and was more frequent in patients from the Atlantic region with a high African component. In contrast, haplotype T45 associated with European origin and was more frequent in Andean patients with a higher European component. These results suggest that the human and M. leprae genomes have co-existed since the African and European origins of the disease, with leprosy ultimately arriving in Colombia during colonization. Distinct M. leprae strains followed European and African settlement in the country and can be detected in contemporary Colombian populations.
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Castro-Fernandez, Víctor; Herrera-Morande, Alejandra; Zamora, Ricardo; Merino, Felipe; Gonzalez-Ordenes, Felipe; Padilla-Salinas, Felipe; Pereira, Humberto M; Brandão-Neto, Jose; Garratt, Richard C; Guixe, Victoria
2017-09-22
One central goal in molecular evolution is to pinpoint the mechanisms and evolutionary forces that cause an enzyme to change its substrate specificity; however, these processes remain largely unexplored. Using the glycolytic ADP-dependent kinases of archaea, including the orders Thermococcales , Methanosarcinales , and Methanococcales , as a model and employing an approach involving paleoenzymology, evolutionary statistics, and protein structural analysis, we could track changes in substrate specificity during ADP-dependent kinase evolution along with the structural determinants of these changes. To do so, we studied five key resurrected ancestral enzymes as well as their extant counterparts. We found that a major shift in function from a bifunctional ancestor that could phosphorylate either glucose or fructose 6-phosphate (fructose-6-P) as a substrate to a fructose 6-P-specific enzyme was started by a single amino acid substitution resulting in negative selection with a ground-state mode against glucose and a subsequent 1,600-fold change in specificity of the ancestral protein. This change rendered the residual phosphorylation of glucose a promiscuous and physiologically irrelevant activity, highlighting how promiscuity may be an evolutionary vestige of ancestral enzyme activities, which have been eliminated over time. We also could reconstruct the evolutionary history of substrate utilization by using an evolutionary model of discrete binary characters, indicating that substrate uses can be discretely lost or acquired during enzyme evolution. These findings exemplify how negative selection and subtle enzyme changes can lead to major evolutionary shifts in function, which can subsequently generate important adaptive advantages, for example, in improving glycolytic efficiency in Thermococcales . © 2017 by The American Society for Biochemistry and Molecular Biology, Inc.
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Park, Joonhong; Kim, Myungshin; Jang, Woori; Chae, Hyojin; Kim, Yonggoo; Chung, Nack-Gyun; Lee, Jae-Wook; Cho, Bin; Jeong, Dae-Chul; Park, In Yang; Park, Mi Sun
2015-05-01
A common ancestral haplotype is strongly suggested in the Korean and Japanese patients with Fanconi anemia (FA), because common mutations have been frequently found: c.2546delC and c.3720_3724delAAACA of FANCA; c.307+1G>C, c.1066C>T, and c.1589_1591delATA of FANCG. Our aim in this study was to investigate the origin of these common mutations of FANCA and FANCG. We genotyped 13 FA patients consisting of five FA-A patients and eight FA-G patients from the Korean FA population. Microsatellite markers used for haplotype analysis included four CA repeat markers which are closely linked with FANCA and eight CA repeat markers which are contiguous with FANCG. As a result, Korean FA-A patients carrying c.2546delC or c.3720_3724delAAACA did not share the same haplotypes. However, three unique haplotypes carrying c.307+1G>C, c.1066C > T, or c.1589_1591delATA, that consisted of eight polymorphic loci covering a flanking region were strongly associated with Korean FA-G, consistent with founder haplotypes reported previously in the Japanese FA-G population. Our finding confirmed the common ancestral haplotypes on the origins of the East Asian FA-G patients, which will improve our understanding of the molecular population genetics of FA-G. To the best of our knowledge, this is the first report on the association between disease-linked mutations and common ancestral haplotypes in the Korean FA population. © 2015 John Wiley & Sons Ltd/University College London.
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Sebastian, Anthony; Frassetto, Lynda A; Sellmeyer, Deborah E; Merriam, Renée L; Morris, R Curtis
2002-12-01
Natural selection has had diet resulting from the inventions of agriculture and animal husbandry. The objective was to estimate the net systemic load of acid (net endogenous acid production; NEAP) from retrojected ancestral preagricultural diets and to compare it with that of contemporary diets, which are characterized by an imbalance of nutrient precursors of hydrogen and bicarbonate ions that induces a lifelong, low-grade, pathogenically significant systemic metabolic acidosis. Using established computational methods, we computed NEAP for a large number of retrojected ancestral preagricultural diets and compared them with computed and measured values for typical American diets. The mean (+/- SD) NEAP for 159 retrojected preagricultural diets was -88 +/- 82 mEq/d; 87% were net base-producing. The computational model predicted NEAP for the average American diet (as recorded in the third National Health and Nutrition Examination Survey) as 48 mEq/d, within a few percentage points of published measured values for free-living Americans; the model, therefore, was not biased toward generating negative NEAP values. The historical shift from negative to positive NEAP was accounted for by the displacement of high-bicarbonate-yielding plant foods in the ancestral diet by cereal grains and energy-dense, nutrient-poor foods in the contemporary diet-neither of which are net base-producing. The findings suggest that diet-induced metabolic acidosis and its sequelae in humans eating contemporary diets reflect a mismatch between the nutrient composition of the diet and genetically determined nutritional requirements for optimal systemic acid-base status.
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Time-Dependent-Asymmetric-Linear-Parsimonious Ancestral State Reconstruction.
Didier, Gilles
2017-10-01
The time-dependent-asymmetric-linear parsimony is an ancestral state reconstruction method which extends the standard linear parsimony (a.k.a. Wagner parsimony) approach by taking into account both branch lengths and asymmetric evolutionary costs for reconstructing quantitative characters (asymmetric costs amount to assuming an evolutionary trend toward the direction with the lowest cost). A formal study of the influence of the asymmetry parameter shows that the time-dependent-asymmetric-linear parsimony infers states which are all taken among the known states, except for some degenerate cases corresponding to special values of the asymmetry parameter. This remarkable property holds in particular for the Wagner parsimony. This study leads to a polynomial algorithm which determines, and provides a compact representation of, the parametric reconstruction of a phylogenetic tree, that is for all the unknown nodes, the set of all the possible reconstructed states associated with the asymmetry parameters leading to them. The time-dependent-asymmetric-linear parsimony is finally illustrated with the parametric reconstruction of the body size of cetaceans.
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A branch-heterogeneous model of protein evolution for efficient inference of ancestral sequences.
Groussin, M; Boussau, B; Gouy, M
2013-07-01
Most models of nucleotide or amino acid substitution used in phylogenetic studies assume that the evolutionary process has been homogeneous across lineages and that composition of nucleotides or amino acids has remained the same throughout the tree. These oversimplified assumptions are refuted by the observation that compositional variability characterizes extant biological sequences. Branch-heterogeneous models of protein evolution that account for compositional variability have been developed, but are not yet in common use because of the large number of parameters required, leading to high computational costs and potential overparameterization. Here, we present a new branch-nonhomogeneous and nonstationary model of protein evolution that captures more accurately the high complexity of sequence evolution. This model, henceforth called Correspondence and likelihood analysis (COaLA), makes use of a correspondence analysis to reduce the number of parameters to be optimized through maximum likelihood, focusing on most of the compositional variation observed in the data. The model was thoroughly tested on both simulated and biological data sets to show its high performance in terms of data fitting and CPU time. COaLA efficiently estimates ancestral amino acid frequencies and sequences, making it relevant for studies aiming at reconstructing and resurrecting ancestral amino acid sequences. Finally, we applied COaLA on a concatenate of universal amino acid sequences to confirm previous results obtained with a nonhomogeneous Bayesian model regarding the early pattern of adaptation to optimal growth temperature, supporting the mesophilic nature of the Last Universal Common Ancestor.
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[Rocky Mountain regional low-level waste compact development and establishment of disposals
International Nuclear Information System (INIS)
1986-01-01
This Compact Issue Study was intended to determine if state institutions in the Rocky Mountain region could reduce low-level radioactive waste shipping and disposal costs through jointly shipping their low-level radioactive wastes. Public institutions in the state of Colorado were used as a test case for this study
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Barrón, C.; Marbu, N.; Duarte, C.M.; Pedersen, M.F.; Lindblad, C.; Kersting, K.; Moy, F.; Bokn, T.
2003-01-01
We studied the effect of nutrient inputs on the carbon (C) budget of rocky shore communities using a set of eight large experimental mesocosms. The mesocosms received a range of inorganic nitrogen (N) and phosphorus (P) additions, at an N:P ratio of 16. These additions were designed to elevate the
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Irvine, Gail V.
2010-01-01
Glacier Bay National Park and Preserve in southeastern Alaska includes extensive coastlines representing a major proportion of all coastlines held by the National Park Service. The marine plants and invertebrates that occupy intertidal shores form highly productive communities that are ecologically important to a number of vertebrate and invertebrate consumers and that are vulnerable to human disturbances. To better understand these communities and their sensitivity, it is important to obtain information on species abundances over space and time. During field studies from 1997 to 2001, I investigated probability-based rocky intertidal monitoring designs that allow inference of results to similar habitat within the bay and that reduce bias. Aerial surveys of a subset of intertidal habitat indicated that the original target habitat of bedrock-dominated sites with slope less than or equal to 30 degrees was rare. This finding illustrated the value of probability-based surveys and led to a shift in the target habitat type to more mixed rocky habitat with steeper slopes. Subsequently, I investigated different sampling methods and strategies for their relative power to detect changes in the abundances of the predominant sessile intertidal taxa: barnacles -Balanomorpha, the mussel Mytilus trossulus and the rockweed Fucus distichus subsp. evanescens. I found that lower-intensity sampling of 25 randomly selected sites (= coarse-grained sampling) provided a greater ability to detect changes in the abundances of these taxa than did more intensive sampling of 6 sites (= fine-grained sampling). Because of its greater power, the coarse-grained sampling scheme was adopted in subsequent years. This report provides detailed analyses of the 4 years of data and evaluates the relative effect of different sampling attributes and management-set parameters on the ability of the sampling to detect changes in the abundances of these taxa. The intent was to provide managers with information
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Good Days on the Trail, 1938-1942: Film Footage of the Rocky Mountains, Colorado
National Oceanic and Atmospheric Administration, Department of Commerce — This film documents student hiking trips conducted by the University of Colorado at Boulder in the Rocky Mountains, Colorado, USA during the summers of 1938-1942....
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William L. Baker: Fire ecology in Rocky Mountain landscapes [book review
Daniel. Yaussy
2010-01-01
Every so often, we need something to make us question our beliefs and views of the natural order of things, to open our minds to different versions of reality so that we become better informed and open to new avenues of thought. The author comes across as slightly antagonistic in his attempt to set the record straight concerning fires in the Rocky Mountains.
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New assay of protective activity of Rocky Mountain spotted fever vaccines.
Anacker, R L; Smith, R F; Mann, R E; Hamilton, M A
1976-01-01
Areas under the fever curves of guinea pigs inoculated with Rocky Mountain spotted fever vaccine over a restricted dose range and infected with a standardized dose of Rickettsia rickettsii varied linearly with log10 dose of vaccine. A calculator was programmed to plot fever curves and calculate the vaccine dose that reduced the fever of infected animals by 50%. PMID:823177
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Rocky intertidal macrobenthic communities across a large-scale estuarine gradient
Directory of Open Access Journals (Sweden)
Luis Giménez
2010-03-01
Full Text Available We evaluated relationships between (1 salinity and species richness and (2 frontal zones and community structure for the rocky intertidal macrobenthic community of the Uruguayan coast. A large-scale sampling design (extent ~500 km covering 9 rocky shores across 3 intertidal levels was performed between September and November 2002. The linear relationship between salinity and species richness (minimum at the freshwater extreme and the lack of correlation between variation in salinity and richness rejected two previous empirical models, explaining variations in species richness along the salinity gradient. Other factors (e.g. turbidity may explain this discrepancy. The estuarine front defined two communities—freshwater and estuarine-marine—differing in species composition and richness. The freshwater community was characterised by low richness and few individuals confined to crevices or tide pools, and must be structured by physical processes (e.g. desiccation; the estuarine-marine community, with individuals occupying almost all available substrata, must be structured by both physical and biological processes. A marine front, separating estuarine and marine habitats, had a weak effect on community structure although estuarine and marine assemblages differed according to species characterising different functional groups. We conclude that the position of the estuarine frontal zones is important for explaining large-scale patterns of community structure in the study area.
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Cost-benefit of three different methods for studying Mediterranean rocky benthic assemblages
Directory of Open Access Journals (Sweden)
Natàlia Sant
2017-03-01
Full Text Available Here we compare the applicability, the information provided and the cost-benefit of three sampling methods usually used in the study of rocky benthic assemblages. For comparative purposes, sampling was performed seasonally and along a depth gradient (0-50 m in the Cabrera Archipelago (western Mediterranean. The destructive scraping (collection method was the least cost-effective but provided the best qualitative and quantitative information. The in situ visual method was the most time-effective but provided low levels of taxonomic resolution and its accuracy decreased with depth due to the increasing difficulty of recognizing species in situ due to nitrogen narcosis, reduced light and cold. The photoquadrat method showed intermediate values of cost-effectiveness and information but was not suitable for multilayered assemblages, as it only accounted for the overstory. A canonical correspondence analysis showed that depth was highlighted as the main environmental gradient (16.0% of variance by the three methods. However, differences due to the sampling method (7.9% of variance were greater than differences due to temporal variability (5.8% of variance, suggesting that the three methods are valid but their selection has to be carefully assessed in relation to the targeted assemblages and the specific goals of each study.
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Plutonium dissolution from Rocky Flats Plant incinerator ash
International Nuclear Information System (INIS)
Delegard, C.H.
1985-06-01
Rockwell Hanford Operations (Rockwell) soon will commence recovery of plutonium from Rocky Flats Plant incinerator ash. In preparation for this processing, Rockwell undertook literature and laboratory studies to identify, select and optimize plutonium dissolution methods for treating the ash. Ash reburning, followed by dissolution in nitric acid containing calcium fluoride, was selected as the processing method for the ash. Recommended values of process parameters were identified. Using the selected process, 99.5% plutonium recovery was achieved, leaving about 12.7 wt % heel residue for an equal weight composite of the three ashes tested. 15 refs., 26 figs
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[Rocky mountain spotted fever: report of two cases].
Martínez-Medina, Miguel Angel; Padilla-Zamudio, Guillermo; Solís-Gallardo, Lilia Patricia; Guevara-Tovar, Marcela
2005-01-01
Rocky Mountain spotted fever (RMSF) is an acute febrile illness caused by infection with Ricketsia Rickettsii, characterized by the presence of petechial rash. Even though the etiology, clinical characteristics and availability of effective antibiotics are known, RMSF related deaths have a prevalence of 4%. In its early stages RMFS can resemble many others infectious conditions and the diagnosis can be difficult. The present paper reports two patients with RMSF; these cases underscore the importance of prompt diagnosis and appropriate antimicrobial therapy, and consider RMSF as a differential diagnosis in any patient who develops fever and rash in an endemic area.
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Trends in Clinical Diagnoses of Rocky Mountain Spotted Fever among American Indians, 2001–2008
Folkema, Arianne M.; Holman, Robert C.; McQuiston, Jennifer H.; Cheek, James E.
2012-01-01
American Indians are at greater risk for Rocky Mountain spotted fever (RMSF) than the general U.S. population. The epidemiology of RMSF among American Indians was examined by using Indian Health Service inpatient and outpatient records with an RMSF International Classification of Diseases, Ninth Revision, Clinical Modification diagnosis. For 2001–2008, 958 American Indian patients with clinical diagnoses of RMSF were reported. The average annual RMSF incidence was 94.6 per 1,000,000 persons, with a significant increasing incidence trend from 24.2 in 2001 to 139.4 in 2008 (P = 0.006). Most (89%) RMSF hospital visits occurred in the Southern Plains and Southwest regions, where the average annual incidence rates were 277.2 and 49.4, respectively. Only the Southwest region had a significant increasing incidence trend (P = 0.005), likely linked to the emergence of brown dog ticks as an RMSF vector in eastern Arizona. It is important to continue monitoring RMSF infection to inform public health interventions that target RMSF reduction in high-risk populations. PMID:22232466
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Biogeographic, cultural, and historical setting of the Northern Rocky Mountains [Chapter 2
S. Karen. Dante-Wood
2018-01-01
The Northern Rockies Adaptation Partnership (NRAP) includes diverse landscapes, ranging from high mountains to grasslands, from alpine glaciers to broad rivers (fig. 1.1). This region, once inhabited solely by Native Americans, has been altered by two centuries of settlement by Euro- Americans through extractive practices such as timber harvest, grazing, and mining,...
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Department of Energy treatment capabilities for greater-than-Class C low-level radioactive waste
International Nuclear Information System (INIS)
Morrell, D.K.; Fischer, D.K.
1995-01-01
This report provides brief profiles for 26 low-level and high-level waste treatment capabilities available at the Idaho National Engineering Laboratory (INEL), Lawrence Livermore National Laboratory (LLNL), Los Alamos National Laboratory (LANL), Oak Ridge National Laboratory (ORNL), Pacific Northwest Laboratory (PNL), Rocky Flats Plant (RFP), Savannah River Site (SRS), and West Valley Demonstration Plant (WVDP). Six of the treatments have potential use for greater-than-Class C low-level waste (GTCC LLW). They include: (a) the glass ceramic process and (b) the Waste Experimental Reduction Facility incinerator at INEL; (c) the Super Compaction and Repackaging Facility and (d) microwave melting solidification at RFP; (e) the vitrification plant at SRS; and (f) the vitrification plant at WVDP. No individual treatment has the capability to treat all GTCC LLW streams. It is recommended that complete physical and chemical characterizations be performed for each GTCC waste stream, to permit using multiple treatments for GTCC LLW
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Management of spruce-fir in even-aged stands in the central Rocky Mountains
Robert R. Alexander; Carleton B. Edminster
1980-01-01
Potential production of Engelmann spruce and subalpine fir in the central Rocky Mountains is simulated for vario.us combinations of stand density, site quality, ages, and thinning schedules. Such estimates are needed to project future development of stands managed in different ways for various uses.
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U-234/U-238 ratio: Qualitative estimate of groundwater flow in Rocky Flats monitoring wells
International Nuclear Information System (INIS)
Laul, J.C.
1994-01-01
Groundwater movement through various pathways is the primary mechanism for the transport of radionuclides and trace elements in a water/rock interaction. About three dozen wells, installed in the Rocky Flats Plant (RFP) Solar Evaporation Ponds (SEP) area, are monitored quarterly to evaluate the extent of any lateral and downgradient migration of contaminants from the Solar Evaporation Ponds: 207-A; 207-B North, 207-B Center, and 207-B South; and 207-C. The Solar Ponds are the main source for the various contaminants: radionuclides (U-238, U-234, Pu-239, 240 and Am-241); anions; and trace metals to groundwaters. The U-238 concentrations in Rocky Flats groundwaters vary from 2 (CO 3 ) 2 2- , because of the predominant bicarbonate medium
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Properties of vitrified rocky flats TRUW with different waste loadings
International Nuclear Information System (INIS)
Eddy, T.L.; Sears, J.W.; Grandy, J.D.; Miley, D.V.; Erickson, A.W.; Farnsworth, R.N.; Larsen, E.D.
1994-01-01
Leach rates, phase structures, and mechanical properties of simulated Rocky Flats Plant 1st and 2nd slate sludge vitrified in an arc melter are described as a function of waste to soil fraction and method of devitrification to produce the glass-ceramic waste form. Volatile, hazardous, and transuranic (TRU) surrogate metals were added to assess dissolution effects. Zirconia and titania were also added to confirm their ability as transuranic-surrogate getters
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DEFF Research Database (Denmark)
Li, Ruiqiang; Ye, Jia; Li, Songgang
2005-01-01
in comparison to their ancestral sequences. Tested on the japonica rice genome, ReAS was able to reconstruct all of the high copy sequences in the Repbase repository of known TEs, and increase the effectiveness of RepeatMasker in identifying TEs from genome sequences. Udgivelsesdato: 2005-Sep...
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DEFF Research Database (Denmark)
Sørensen, Anne Mehlin; Surlyk, Finn
2013-01-01
a lower taxonomic agreement to the death assemblage than found in previous published studies. Rocky shore life and death assemblages thus appear to show lower taxonomic agreement compared to muddy or sandy shelf assemblages due to the mix after death with the sandy beach assemblage. A hypothetical fossil......Comparison of a modern rocky shore mollusc life assemblage from Thailand with the associated death assemblage, and interpretation of the fossilization potential of the latter, are used to investigate the fidelity in reconstruction of ancient analogues. The fauna from the death assemblage represents...... species from the rocky shore and the associated sandy pocket beaches, and only a few exotic species from other, completely different habitats are present. The environmental fidelity between the life and death assemblage is thus high, with the majority of species from the death assemblage representing...
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Henry, C. D.; Cousens, B.; John, D. A.; Colgan, J. P.
2009-12-01
The character and even existence of an ancestral Tertiary Cascades arc in western Nevada and eastern California south of the modern arc are controversial. Based on extensive published and new data on the regional distribution, timing, style, and composition of magmatism, we conclude that an ancestral arc was established by WSW migration of magmatism into western NV and the northeastern Sierra Nevada in the Oligocene and Miocene as a result of progressive rollback of the shallow subducted slab. Magma migration started with the well-known southward sweep through NE NV and NW UT between ~46 and 36 Ma. By ~30 Ma, migration of the leading edge and central belt of activity was much more WSW, especially after removing younger ~E-W extension. Locally sourced, initially dispersed and small volume, intermediate to mafic lavas erupted in western NV and northeastern CA by ~30 Ma and the eastern Sierra Nevada by ~28 Ma, contemporaneous with the much more voluminous ignimbrite flare-up in central NV. As migration continued, the ignimbrite flare-up tapered off. A voluminous, NNW-trending, dominantly effusive volcanic belt developed by ~22-18 Ma in western NV and was continuous from the Bodie Hills (CA/NV) to the Warner Range (northeast CA) by ~16-15 Ma. The volcanic belt was dominated by intermediate to mafic magmas compositionally similar to those of the modern south Cascades arc but reflecting melting of an old, subduction-modified lithosphere (Cousens et al. 2008; Geosphere). Extensive middle Miocene bimodal rocks related to the Yellowstone hotspot cover these rocks in NW NV, NE CA, and SE OR, but 30-23 Ma, intermediate to mafic and lesser silicic rocks are voluminous wherever older rocks are exposed below the middle Miocene rocks. Between ~25 Ma and the present, magmatism migrated WSW at an average rate of ~8 km/Ma but was at least partly stepwise, as exemplified by an ~50 km westward step at 2 Ma in the Lassen area (Guffanti et al. 1990, JGR). The magmatic belt was as much
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Taylor, Janis L.
2012-01-01
The Middle Rockies Ecoregion—characterized by steep, high-elevation mountain ranges and intermountain valleys—is a disjunct ecoregion composed of three distinct geographic areas: the Greater Yellowstone area in northwest Wyoming, southwest Montana, and eastern Idaho; the Bighorn Mountains in north-central Wyoming and south-central Montana; and the Black Hills in western South Dakota and eastern Wyoming (Omernik, 1987; U.S. Environmental Protection Agency, 1997). The ecoregion covers approximately 90,160 km2 (34,881 mi2), and its three distinct geographic sections are bordered by several other ecoregions (fig. 1). The Yellowstone section abuts the Montana Valley and Foothill Prairies and the Northern Rockies Ecoregions to the north, the Snake River Basin and the Central Basin and Range Ecoregions to the west, and the Wyoming Basin Ecoregion to the south and east. The Bighorn Mountains section lies between the Wyoming Basin Ecoregion to the west and the Northwestern Great Plains Ecoregion to the east, and it abuts the Montana Valleys and Foothill Prairies Ecoregion to the north. The Black Hills section is entirely surrounded by the Northwestern Great Plains Ecoregion. The Continental Divide crosses the ecoregion from the southeast along the Wind River Range, through Yellowstone National Park, and west along the Montana-Idaho border. On both sides of the divide, topographic relief causes local climate variability, particularly the effects of aspect, exposure to prevailing wind, thermal inversions, and rain-shadow effects, that are reflected in the wide variety of flora and fauna within the ecoregion (Ricketts and others, 1999).
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Computational analysis and functional expression of ancestral copepod luciferase.
Takenaka, Yasuhiro; Noda-Ogura, Akiko; Imanishi, Tadashi; Yamaguchi, Atsushi; Gojobori, Takashi; Shigeri, Yasushi
2013-10-10
We recently reported the cDNA sequences of 11 copepod luciferases from the superfamily Augaptiloidea in the order Calanoida. They were classified into two groups, Metridinidae and Heterorhabdidae/Lucicutiidae families, by phylogenetic analyses. To elucidate the evolutionary processes, we have now further isolated 12 copepod luciferases from Augaptiloidea species (Metridia asymmetrica, Metridia curticauda, Pleuromamma scutullata, Pleuromamma xiphias, Lucicutia ovaliformis and Heterorhabdus tanneri). Codon-based synonymous/nonsynonymous tests of positive selection for 25 identified copepod luciferases suggested that positive Darwinian selection operated in the evolution of Heterorhabdidae luciferases, whereas two types of Metridinidae luciferases had diversified via neutral mechanism. By in silico analysis of the decoded amino acid sequences of 25 copepod luciferases, we inferred two protein sequences as ancestral copepod luciferases. They were expressed in HEK293 cells where they exhibited notable luciferase activity both in intracellular lysates and cultured media, indicating that the luciferase activity was established before evolutionary diversification of these copepod species. © 2013.
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Options for the disposition of current inventory of Rocky Flats Plant residues. Revision 1
International Nuclear Information System (INIS)
Chang, L.
1994-01-01
With the end of the Cold War, much concern has been directed towards the accumulation of special nuclear material resulting from the dismantlement of a large number of nuclear weapons. This concern has opened up a debate over the final disposition of the large inventory of weapons-capable plutonium. Technologies for the conversion of plutonium into acceptable forms will need to be assessed and evaluated. Candidate strategies for interim and final disposition include a variety of immobilization techniques (vitrification in glass, ceramic, or metal), conversion to reactor fuel, or direct discard as waste. The selected disposition strategy will be chosen based upon a range of decision metrics such as expected conversion costs, equipment requirements, and waste generation. To this end, a systems analysis approach is necessary for the evaluation and comparison of the different disposition strategies. Current data on inventory of plutonium, such as that at the Rocky Flats Plant (RFP), may be useful for the evaluation and selection of candidate disposition technologies. A preliminary analysis of the residues of scrap at Rocky Flats was performed to establish a foundation for comparison of candidate strategies. About 3 metric tons of plutonium and 270 metric tons of other wastes remain in the inventory at Rocky Flats. Estimates on the equipment, facility, manpower, and cost requirements to process this inventory over a proposed 10-year cleanup campaign will provide a benchmark for comparison and assessment of proposed disposition technologies
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Studies on ’Macaca mulatta’ Infected with Rocky Mountain Spotted Fever
1976-09-10
Mountain spotted fever (RMSF) rickettsiae. The LD50 in monkeys of the yolk-sac-grown seed stock was 10 to the 1.35th power plaque-forming units. Blood...acid glycoprotein, haptoglobin and albumin) were measured during a study in 16 male rhesus monkeys to determine the median lethal dose (LD50) of Rocky
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Diseases of whooping cranes seen during annual migration of the Rocky Mountain flock
Snyder, S. Bret; Richard, Michael J.; Drewien, Roderick C.; Thomas, Nancy J.; Thilsted, John P.; Junge, Randall E.
1991-01-01
Diagnosis and treatment of ill whooping cranes of the Rocky Mountain flock was provided by a zoological facility. Cases of avian cholera, lead poisoning and avian tuberculosis were encountered. The zoo efforts were an adjunct to the U.S. Fish and Wildlife Service, Whooping Crane Recovery Plan.
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International Nuclear Information System (INIS)
Hardin, D.
1990-08-01
The study objectives are to describe seasonal and successional variation in rocky Intertidal community structure; determine the response of rocky Intertidal communities to natural and human-induced disturbances and correlate these responses with successional, seasonal, and latitudinal variation; and correlate life history information and oil toxicity data with data from this and other relevant studies. The Year III and IV report is for the third (1987) and fourth (1988) years of a five-year field experimental study investigating two biological assemblages, the Mytilus assemblage and the Endocladia/Mastocarpus papillatus assemblage, that are being studied at six sites along the California coast. Experimental treatments include clearing three plots in spring 1985 and three plots in fall 1985. Data from the program will be correlated with oil toxicity data and other studies to provide indications of the long term effects of an oil spill on rocky Intertidal communities. The report is volume 3 of a 5 volume set
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Circumscribing campo rupestre – megadiverse Brazilian rocky montane savanas
Directory of Open Access Journals (Sweden)
RJV. Alves
Full Text Available Currently campo rupestre (CR is a name accepted and used internationally by botanists, zoologists, and other naturalists, usually applied to a very specific ecosystem, despite the lack of a consensual published circumscription. We present a tentative geographic circumscription of the term, combining data on climate, geology, geomorphology, soil, flora, fauna and vegetation. The circumscription of campo rupestre proposed herein is based on the following premises: (1 the classification of vegetation is not an exact science, and it is difficult to attain a high degree of consensus to the circumscription of vegetation names; (2 despite this, vegetation classification is useful for conservation and management. It is thus desirable to circumscribe vegetation types with the greatest attainable precision; (3 there is a need to preserve all montane and rocky vegetation types, regardless of classification, biome, etc; (4 the CRs are formed by a complex mosaic of vegetation types including rock-dwelling, psammophilous, aquatic, epiphytic, and penumbral plant communities. Campos rupestres stricto sensu are a Neotropical, azonal vegetation complex endemic to Brazil, forming a mosaic of rocky mountaintop “archipelagos” inserted within a matrix of zonal vegetation, mainly in the Cerrado and Caatinga provinces of the Brazilian Shield (southeastern, northeastern and central-western regions, occurring mainly above 900 m asl. up to altitudes exceeding 2000 m, having measured annual precipitation between 800 and 1500 mm, and an arid season of two to five months.
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Paleozoic and mesozoic GIS data from the Geologic Atlas of the Rocky Mountain Region: Volume 1
Graeber, Aimee; Gunther, Gregory
2017-01-01
The Rocky Mountain Association of Geologists (RMAG) is, once again, publishing portions of the 1972 Geologic Atlas of the Rocky Mountain Region (Mallory, ed., 1972) as a geospatial map and data package. Georeferenced tiff (Geo TIFF) images of map figures from this atlas has served as the basis for these data products. Shapefiles and file geodatabase features have been generated and cartographically represented for select pages from the following chapters:• Phanerozoic Rocks (page 56)• Cambrian System (page 63)• Ordovician System (pages 78 and 79)• Silurian System (pages 87 - 89)• Devonian System (pages 93, 94, and 96 - 98)• Mississippian System (pages 102 and 103)• Pennsylvanian System (pages 114 and 115)• Permian System (pages 146 and 149 - 154)• Triassic System (pages 168 and 169)• Jurassic System (pages 179 and 180)• Cretaceous System (pages 197 - 201, 207 - 210, 215, - 218, 221, 222, 224, 225, and 227).The primary purpose of this publication is to provide regional-scale, as well as local-scale, geospatial data of the Rocky Mountain Region for use in geoscience studies. An important aspect of this interactive map product is that it does not require extensive GIS experience or highly specialized software.
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Effects of climate change on ecological disturbance in the Northern Rockies Region [Chapter 8
Loehman, Rachel A.; Bentz, Barbara J.; DeNitto, Gregg A.; Keane, Robert E.; Manning, Mary E.; Duncan, Jacob P.; Egan, Joel M.; Jackson, Marcus B.; Kegley, Sandra; Lockman, I. Blakey; Pearson, Dean E.; Powell, James A.; Shelly, Steve; Steed, Brytten E.; Zambino, Paul J.
2018-01-01
This chapter describes the ecology of important disturbance regimes in the Forest Service, U.S. Department of Agriculture (USFS) Northern Region and the Greater Yellowstone Area, hereafter called the Northern Rockies region, and potential shifts in these regimes as a consequence of observed and projected climate change. The term disturbance regime describes the general temporal and spatial characteristics of a disturbance agent - insect, disease, fire, weather, even human activity - and the effects of that agent on the landscape (table 8.1). More specifically, a disturbance regime is the cumulative effect of multiple disturbance events over space and time (Keane 2013). Disturbances disrupt an ecosystem, community, or population structure and change elements of the biological environment, physical environment, or both (White and Pickett 1985). The resulting shifting mosaic of diverse ecological patterns and structures in turn affects future patterns of disturbance, in a reciprocal, linked relationship that shapes the fundamental character of landscapes and ecosystems. Disturbance creates and maintains biological diversity in the form of shifting, heterogeneous mosaics of diverse communities and habitats across a landscape (McKinney and Drake 1998), and biodiversity is generally highest when disturbance is neither too rare nor too frequent on the landscape (Grime 1973).
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International Nuclear Information System (INIS)
Walsh, B.; Fisher, C.; Zigler, G.; Clark, R.A.
1990-01-01
FSARs. Rockwell International, as operating contractor at the Rocky Flats plant, conducted a safety analysis program during the 1980s. That effort resulted in Final Safety Analysis Reports (FSARs) for several buildings, one of them being the Building 707 Final Safety Analysis Report, June 87 (707FSAR) and a Plant Safety Analysis Report. Rocky Flats Risk Assessment Guide, March 1985 (RFRAG85) documents the methodologies that were used for those FSARs. Resources available for preparation of those Rocky Flats FSARs were very limited. After addressing the more pressing safety issues, some of which are described below, the present contractor (EG ampersand G) intends to conduct a program of upgrading the FSARs. This report presents the results of a review of the methodologies described in RFRAG85 and 707FSAR and contains suggestions that might be incorporated into the methodology for the FSAR upgrade effort
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Sustainability of ancestral methods of agricultural production in Perú: ¿keep or replace?
Directory of Open Access Journals (Sweden)
Dani Eduardo Vargas Huanca
2016-09-01
Full Text Available Based on the success of some Andean products such as quinoa, potatoes or maca in international food trade and the growing environmental degradation facing developing countries, resulting from intensive exploitation activities; Our research seeks to show the trend that is assumed from the academic / scientific community and public officials in the food sector in Peru, against the need to maintain sustainable various ancestral modes of agricultural production (case quinoa, for it analyze quantitative and qualitative obtained from public institutions and Peruvian universities.
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International Nuclear Information System (INIS)
Jierree, C.; Ticknor, K.
1996-10-01
With shrinking budgets and downsizing, a need for streamlined compliance initiatives became evident at the Rocky Flats Environmental Technology Site (RFETS). Therefore, Rocky Mountain Remediation Services (RMRS) at the RFETS successfully and quickly modified the RFETS RCRA Part B Permit to obtain significant cost savings and increased flexibility. This 'was accomplished by requesting operations personnel to suggest changes to the Part B Permit which did not diminish overall compliance and which would be most. cost beneficial. The U.S. Department of Energy (DOE) subsequently obtained approval of those changes from the Colorado Department of Public Health and the Environment (CDPHE)
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ROCKY EXTRASOLAR PLANETARY COMPOSITIONS DERIVED FROM EXTERNALLY POLLUTED WHITE DWARFS
International Nuclear Information System (INIS)
Klein, B.; Jura, M.; Zuckerman, B.; Koester, D.
2011-01-01
We report Keck High Resolution Echelle Spectrometer data and model atmosphere analysis of two helium-dominated white dwarfs, PG1225–079 and HS2253+8023, whose heavy pollutions most likely derive from the accretion of terrestrial-type planet(esimal)s. For each system, the minimum accreted mass is ∼10 22 g, that of a large asteroid. In PG1225–079, Mg, Cr, Mn, Fe, and Ni have abundance ratios similar to bulk Earth values, while we measure four refractory elements, Ca, Sc, Ti, and V, all at a factor of ∼2-3 higher abundance than in the bulk Earth. For HS2253+8023 the swallowed material was compositionally similar to bulk Earth in being more than 85% by mass in the major element species, O, Mg, Si, and Fe, and with abundances in the distinctive proportions of mineral oxides—compelling evidence for an origin in a rocky parent body. Including previous studies we now know of four heavily polluted white dwarfs where the measured oxygen and hydrogen are consistent with the view that the parents' bodies formed with little ice, interior to any snow line in their nebular environments. The growing handful of polluted white dwarf systems with comprehensive abundance measurements form a baseline for characterizing rocky exoplanet compositions that can be compared with bulk Earth.
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Land disposal restriction (LDR) waste management strategy at Rocky Flats
International Nuclear Information System (INIS)
Tyler, R.W.; Anderson, S.A.; Rising, T.L.
1993-01-01
The Rocky Flats Plant (RFP) is a government-owned, contractor-operated facility which is a part of the nationwide DOE nuclear weapons production complex. Rocky Flats has accumulated (and will continue to generate) a substantial quantity of mixed waste subject to regulation under the land disposal restrictions (LDR) of the Resource Conservation and Recovery Act (RCRA). These waste streams include low level mixed waste and transuranic mixed waste which are LDR primarily due to solvent and heavy metal contamination. DOE and EPA have entered into a Federal Facility Compliance Agreement (FFCA) which requires actions to be taken to ensure the accurate identification, safe storage and minimization of LDR mixed wastes prior to their ultimate treatment and/or disposal. As required by the FFCA, DOE has prepared a Comprehensive Treatment and Management Plant (CTMP) which describes the strategy and commitments for bringing LDR wastes at RFP into compliance with applicable regulations. This strategy includes waste characterization and reclassification, utilization of existing commercial and DOE treatment capacity, as well as, the development and implementation of treatment systems (and other management systems) for the purpose of achieving LDR regulatory compliance and ultimate waste disposal. This paper will give an overview of this strategy including a description of the major waste streams being addressed, the regulatory drivers, and plans and status of ongoing treatment systems technology development and implementation efforts
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Criticality safety evaluation of Rocky Flats Plant one-gallon shipping containers
International Nuclear Information System (INIS)
Shaw, M.E.
1991-12-01
Criticality safety calculations have been performed to provide an analytical basis for handling, storage and transport of Rocky Flats Plant (RFP) one-gallon shipping containers. A mass limit was establish for metal (solid uranium or plutonium) and slurries (undissolved U or Pu solids in a ''mud,'' ''sludge,'' or ''slurry''). A separate volume limit was developed for plutonium solutions (liquids, either aqueous or organic, containing no visible undissolved solids)
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Criticality safety evaluation of Rocky Flats Plant one-gallon shipping containers
Energy Technology Data Exchange (ETDEWEB)
Shaw, M.E.
1991-12-01
Criticality safety calculations have been performed to provide an analytical basis for handling, storage and transport of Rocky Flats Plant (RFP) one-gallon shipping containers. A mass limit was establish for metal (solid uranium or plutonium) and slurries (undissolved U or Pu solids in a ``mud,`` ``sludge,`` or ``slurry``). A separate volume limit was developed for plutonium solutions (liquids, either aqueous or organic, containing no visible undissolved solids).
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National Research Council Canada - National Science Library
Gunnison, Douglas
1997-01-01
Rocky Mountain Arsenal (RMA) was for many years a site of military chemical weapons manufacturing activities, including manufacture and assembly of weapons containing intermediate and toxic chemical end-products, incendiary...
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International Nuclear Information System (INIS)
Reyes, M.; Wilkinson, G.S.; Acquavella, J.F.
1984-03-01
The Plutonium Workers Study is a multifaceted epidemiologic investigation of workers at six Department of Energy (DOE) facilities: Los Alamos, Rocky Flats, Mound, Savannah River, Oak Ridge, and Hanford. Information from a variety of record sources has been collected and abstracted for these studies. This report considers the accuracy of the demographic, occupational, and radiation exposure data collected for studies at Rocky Flats. the majority of the information was accurately abstracted, and analyses based on these data may be conducted
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Impacts and effects of ocean warming on intertidal rocky habitats
Hawkins, Stephen J.; Evans, A J; Firth, L B; Genner, Martin J; Herbert, R J H; Adams, L C; Moore, P J; Mieszkowska, N; Thompson, R.C.; Burrows, M.T.; Fenberg, P.B.
2016-01-01
• Intertidal rocky habitats comprise over 50% of the shorelines of the world, supporting a diversity of marine life and providing extensive ecosystem services worth in the region of US$ 5-10 trillion per year. • They are valuable indicators of the impacts of climate change on the wider marine environment and ecosystems. • Changes in species distributions, abundance and phenology have already been observed around the world in response to recent rapid climate change. • Species-level responses w...
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Barbara Holzer for the LHC Team
2012-01-01
A rocky re-start with beam followed a successful machine development period and the first technical stop of 2012. Today, Friday 11 May, the machine began running again with 1380 bunches. A short, two-day machine development period was successfully completed on 21-22 April. It focused on topics relevant for the 2012 physics beam operation. This was then followed by a five-day technical stop, the first of the year. The technical stop finished on time on Friday 26 April. The re-start with beam was somewhat tortuous and hampered by an unlucky succession of technical faults leading to extended periods of downtime. The planned intensity increase was put on hold for three days with the machine operating with 1092 bunches and a moderate bunch intensity of 1.3x1011 protons. This delivered a reasonable peak luminosity of 3.6x1033 cm-2s-1 to ATLAS and CMS. Higher than usual beam losses were observed in the ramp and squeeze, and time was required to investigate the causes and to implement mitigati...
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2013-08-07
... Plan and Environmental Impact Statement; Two Ponds National Wildlife Refuge, Arvada, CO; Comprehensive... prepare a Comprehensive Conservation Plan (CCP) and an Environmental Impact Statement (EIS) for the Rocky..., including more than 120 species of birds, coyote and red fox, muskrat, raccoon, and beaver, deer, several...
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Zientek, Jillian; Dahlgren, F. Scott; McQuiston, Jennifer H.; Regan, Joanna
2013-01-01
Among 2012 Docstyle survey respondents, 80% identified doxycycline as the appropriate treatment for Rocky Mountain spotted fever in patients ≥8 years old, but only 35% correctly chose doxycycline in patients
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Effects of climate change on forest vegetation in the northern Rockies [Chapter 5
Robert E. Keane; Mary Frances Mahalovich; Barry L. Bollenbacher; Mary E. Manning; Rachel A. Loehman; Terrie B. Jain; Lisa M. Holsinger; Andrew J. Larson
2018-01-01
Increasing air temperature, through its influence on soil moisture, is expected to cause gradual changes in the abundance and distribution of tree, shrub, and grass species throughout the Northern Rockies, with drought tolerant species becoming more competitive. The earliest changes will be at ecotones between lifeforms (e.g., upper and lower treelines). Ecological...
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Effects of climate change on ecological disturbance in the northern Rockies
Loehman, Rachel A.; Bentz, Barbara J.; DeNitto, Gregg A.; Keane, Robert E.; Manning, Mary E.; Duncan, Jacob P.; Egan, Joel M.; Jackson, Marcus B.; Kegley, Sandra; Lockman, I. Blakey; Pearson, Dean E.; Powell, James A.; Shelly, Steve; Steed, Brytten E.; Zambino, Paul J.; Halofsky, Jessica E.; Peterson, David L.
2018-01-01
Disturbances alter ecosystem, community, or population structure and change elements of the biological and/or physical environment. Climate changes can alter the timing, magnitude, frequency, and duration of disturbance events, as well as the interactions of disturbances on a landscape, and climate change may already be affecting disturbance events and regimes. Interactions among disturbance regimes, such as the cooccurrence in space and time of bark beetle outbreaks and wildfires, can result in highly visible, rapidly occurring, and persistent changes in landscape composition and structure. Understanding how altered disturbance patterns and multiple disturbance interactions might result in novel and emergent landscape behaviors is critical for addressing climate change impacts and for designing land management strategies that are appropriate for future climates This chapter describes the ecology of important disturbance regimes in the Northern Rockies region, and potential shifts in these regimes as a consequence of observed and projected climate change. We summarize five disturbance types present in the Northern Rockies that are sensitive to a changing climate--wildfires, bark beetles, white pine blister rust (Cronartium ribicola), other forest diseases, and nonnative plant invasions—and provide information that can help managers anticipate how, when, where, and why climate changes may alter the characteristics of disturbance regimes.
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KEPLER'S FIRST ROCKY PLANET: KEPLER-10b
International Nuclear Information System (INIS)
Batalha, Natalie M.; Borucki, William J.; Bryson, Stephen T.; Haas, Michael R.; Koch, David G.; Lissauer, Jack J.; Rowe, Jason F.; Buchhave, Lars A.; Fressin, Francois; Latham, David W.; Caldwell, Douglas A.; Jenkins, Jon M.; Christensen-Dalsgaard, Joergen; Kjeldsen, Hans; Ciardi, David; Dunham, Edward W.; Gautier, Thomas N. III; Gilliland, Ronald L.; Howell, Steve B.; Marcy, Geoffrey W.
2011-01-01
NASA's Kepler Mission uses transit photometry to determine the frequency of Earth-size planets in or near the habitable zone of Sun-like stars. The mission reached a milestone toward meeting that goal: the discovery of its first rocky planet, Kepler-10b. Two distinct sets of transit events were detected: (1) a 152 ± 4 ppm dimming lasting 1.811 ± 0.024 hr with ephemeris T [BJD] =2454964.57375 +0.00060 -0.00082 + N*0.837495 +0.000004 -0.000005 days and (2) a 376 ± 9 ppm dimming lasting 6.86 ± 0.07 hr with ephemeris T [BJD] =2454971.6761 +0.0020 -0.0023 + N*45.29485 +0.00065 -0.00076 days. Statistical tests on the photometric and pixel flux time series established the viability of the planet candidates triggering ground-based follow-up observations. Forty precision Doppler measurements were used to confirm that the short-period transit event is due to a planetary companion. The parent star is bright enough for asteroseismic analysis. Photometry was collected at 1 minute cadence for >4 months from which we detected 19 distinct pulsation frequencies. Modeling the frequencies resulted in precise knowledge of the fundamental stellar properties. Kepler-10 is a relatively old (11.9 ± 4.5 Gyr) but otherwise Sun-like main-sequence star with T eff = 5627 ± 44 K, M * = 0.895 ± 0.060 M sun , and R * = 1.056 ± 0.021 R sun . Physical models simultaneously fit to the transit light curves and the precision Doppler measurements yielded tight constraints on the properties of Kepler-10b that speak to its rocky composition: M P = 4.56 +1.17 -1.29 M + , R P = 1.416 +0.033 -0.036 R + , and ρ P = 8.8 +2.1 -2.9 g cm -3 . Kepler-10b is the smallest transiting exoplanet discovered to date.
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Illa, Eudald; Sargent, Daniel J; Lopez Girona, Elena; Bushakra, Jill; Cestaro, Alessandro; Crowhurst, Ross; Pindo, Massimo; Cabrera, Antonio; van der Knaap, Esther; Iezzoni, Amy; Gardiner, Susan; Velasco, Riccardo; Arús, Pere; Chagné, David; Troggio, Michela
2011-01-12
Comparative genome mapping studies in Rosaceae have been conducted until now by aligning genetic maps within the same genus, or closely related genera and using a limited number of common markers. The growing body of genomics resources and sequence data for both Prunus and Fragaria permits detailed comparisons between these genera and the recently released Malus × domestica genome sequence. We generated a comparative analysis using 806 molecular markers that are anchored genetically to the Prunus and/or Fragaria reference maps, and physically to the Malus genome sequence. Markers in common for Malus and Prunus, and Malus and Fragaria, respectively were 784 and 148. The correspondence between marker positions was high and conserved syntenic blocks were identified among the three genera in the Rosaceae. We reconstructed a proposed ancestral genome for the Rosaceae. A genome containing nine chromosomes is the most likely candidate for the ancestral Rosaceae progenitor. The number of chromosomal translocations observed between the three genera investigated was low. However, the number of inversions identified among Malus and Prunus was much higher than any reported genome comparisons in plants, suggesting that small inversions have played an important role in the evolution of these two genera or of the Rosaceae.
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Directory of Open Access Journals (Sweden)
Velasco Riccardo
2011-01-01
Full Text Available Abstract Background Comparative genome mapping studies in Rosaceae have been conducted until now by aligning genetic maps within the same genus, or closely related genera and using a limited number of common markers. The growing body of genomics resources and sequence data for both Prunus and Fragaria permits detailed comparisons between these genera and the recently released Malus × domestica genome sequence. Results We generated a comparative analysis using 806 molecular markers that are anchored genetically to the Prunus and/or Fragaria reference maps, and physically to the Malus genome sequence. Markers in common for Malus and Prunus, and Malus and Fragaria, respectively were 784 and 148. The correspondence between marker positions was high and conserved syntenic blocks were identified among the three genera in the Rosaceae. We reconstructed a proposed ancestral genome for the Rosaceae. Conclusions A genome containing nine chromosomes is the most likely candidate for the ancestral Rosaceae progenitor. The number of chromosomal translocations observed between the three genera investigated was low. However, the number of inversions identified among Malus and Prunus was much higher than any reported genome comparisons in plants, suggesting that small inversions have played an important role in the evolution of these two genera or of the Rosaceae.
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Effects of human trampling on a rocky shore fauna on the Sao Paulo coast, southeastern Brazil.
Ferreira, M N; Rosso, S
2009-11-01
Increased tourist activity in coastal regions demands management strategies to reduce impacts on rocky shores. The highly populated coastal areas in southeastern Brazil are an example of degradation caused by development of industry and tourism. Among different shore impacts, trampling has been intensively studied, and may represent a significant source of stress for intertidal fauna. A randomised blocks design was applied to experimentally study the effects of two different trampling intensities on richness, diversity, density and biomass of the rocky shore fauna of Obuseiro beach, Guarujá, southeastern Brazil. Blocks were distributed in two portions of the intertidal zone, dominated respectively by Chthamalus bisinuatus (Cirripedia) and Isognomon bicolor (Bivalvia). Blocks were trampled over three months, simulating the vacation period in Brazil and were monitored for the following nine months. Results indicate that Chthamalus bisinuatus is vulnerable to trampling impacts. Richness, diversity and turn-over index tended to be higher in trampled plots four months after trampling ceased. In general, results agree with previous trampling studies, suggesting that even low intensities of trampling may cause some impact on intertidal communities. Management strategies should include isolation of sensitive areas, construction of boardwalks, visitor education and monitoring programmes. In Brazil, additional data obtained from experimental studies are necessary in order to achieve a better understanding of trampling impacts on rocky shore communities.
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Tinjauan Kebutuhan Aktualisasi Diri Karyawan Operasional di Hotel Grand Rocky Bukittinggi
Mauliddy, Yozi; Chair, Ira Meirina; Kasmita, Kasmita
2015-01-01
This research aimed to describe about self actualitation needs operational employees in Grand Rocky Hotel Bukittinggi which in term of three indicators : achievement needs, safety needs and status needs. The type of this research is descriptive with qualitative data. Data collection techniques by using observation, interview and documentation. Based on the reseach about (1) achievement needs to do something better than the competitor, obtaining or passing through a dificult target, to develop...
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Criticality safety evaluation of Rocky Flats Plant one-gallon shipping containers
Energy Technology Data Exchange (ETDEWEB)
Shaw, M.E.
1991-12-01
Criticality safety calculations have been performed to provide an analytical basis for handling, storage and transport of Rocky Flats Plant (RFP) one-gallon shipping containers. A mass limit was establish for metal (solid uranium or plutonium) and slurries (undissolved U or Pu solids in a mud,'' sludge,'' or slurry''). A separate volume limit was developed for plutonium solutions (liquids, either aqueous or organic, containing no visible undissolved solids).
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Atmospheric Circulations of Rocky Planets as Heat Engines
Koll, D. D. B.
2017-12-01
Rocky planets are extremely common in the galaxy and include Earth, Mars, Venus, and hundreds of exoplanets. To understand and compare the climates of these planets, we need theories that are general enough to accommodate drastically different atmospheric and planetary properties. Unfortunately, few such theories currently exist.For Earth, there is a well-known principle that its atmosphere resembles a heat engine - the atmosphere absorbs heat near the surface, at a hot temperature, and emits heat to space in the upper troposphere, at a cold temperature, which allows it to perform work and balance dissipative processes such as friction. However, previous studies also showed that Earth's hydrological cycle uses up a large fraction of the heat engine's work output, which makes it difficult to view other atmospheres as heat engines.In this work I extend the heat engine principle from Earth towards other rocky planets. I explore both dry and moist atmospheres in an idealized general circulation model (GCM), and quantify their work output using entropy budgets. First, I show that convection and turbulent heat diffusion are important entropy sources in dry atmospheres. I develop a scaling that accounts for its effects, which allows me to predict the strength of frictional dissipation in dry atmospheres. There are strong parallels between my scaling and so-called potential intensity theory, which is a seminal theory for understanding tropical cyclones on Earth. Second, I address how moisture affects atmospheric heat engines. Moisture modifies both the thermodynamic properties of air and releases latent heat when water vapor condenses. I explore the impact of both effects, and use numerical simulations to explore the difference between dry and moist atmospheric circulations across a wide range of climates.
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Detection ratios on winter surveys of Rocky Mountain Trumpeter Swans Cygnus buccinator
Bart, J.; Mitchell, C.D.; Fisher, M.N.; Dubovsky, J.A.
2007-01-01
We estimated the detection ratio for Rocky Mountain Trumpeter Swans Cygnus buccinator that were counted during aerial surveys made in winter. The standard survey involved counting white or grey birds on snow and ice and thus might be expected to have had low detection ratios. On the other hand, observers were permitted to circle areas where the birds were concentrated multiple times to obtain accurate counts. Actual numbers present were estimated by conducting additional intensive aerial counts either immediately before or immediately after the standard count. Surveyors continued the intensive surveys at each area until consecutive counts were identical. The surveys were made at 10 locations in 2006 and at 19 locations in 2007. A total of 2,452 swans were counted on the intensive surveys. Detection ratios did not vary detectably with year, observer, which survey was conducted first, age of the swans, or the number of swans present. The overall detection ratio was 0.93 (90% confidence interval 0.82-1.04), indicating that the counts were quite accurate. Results are used to depict changes in population size for Rocky Mountain Trumpeter Swans from 1974-2007. ?? Wildfowl & Wetlands Trust.
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Hydrology of a nuclear-processing plant site, Rocky Flats, Jefferson County, Colorado
Hurr, R. Theodore
1976-01-01
Accidental releases of contaminants resulting from the operation of the U.S. Energy Research and Development Administration's nuclear-processing and recovery plant located on Rocky Flats will move at different rates through -different parts of the hydrologic system. Rates of movement are dependent upon the magnitude of the accidental release and the hydrologic conditions at the time of the release. For example, during wet periods, a contaminant resulting from a 5,000-gallon (19,000-1itre) release on the land surface would enter the ground-water system in about 2 to 12 hours. Ground-water flow in the Rocky Flats Alluvium might move the contaminant eastward at a rate of about 3 to 11 feet (0.9 to 3.4 metres) per day, if it remains dissolved. Maximum time to a point of discharge would be about 3 years; minimum time could be a few days. A contaminant entering a stream would then move at a rate of about 60 feet (18 metres) per minute under pool-and-riffle conditions. The rate of movement might be about 420 feet (128 metres) per minute under open-channel-flow conditions following intense thunderstorms.
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Relational Database for the Geology of the Northern Rocky Mountains - Idaho, Montana, and Washington
Causey, J. Douglas; Zientek, Michael L.; Bookstrom, Arthur A.; Frost, Thomas P.; Evans, Karl V.; Wilson, Anna B.; Van Gosen, Bradley S.; Boleneus, David E.; Pitts, Rebecca A.
2008-01-01
A relational database was created to prepare and organize geologic map-unit and lithologic descriptions for input into a spatial database for the geology of the northern Rocky Mountains, a compilation of forty-three geologic maps for parts of Idaho, Montana, and Washington in U.S. Geological Survey Open File Report 2005-1235. Not all of the information was transferred to and incorporated in the spatial database due to physical file limitations. This report releases that part of the relational database that was completed for that earlier product. In addition to descriptive geologic information for the northern Rocky Mountains region, the relational database contains a substantial bibliography of geologic literature for the area. The relational database nrgeo.mdb (linked below) is available in Microsoft Access version 2000, a proprietary database program. The relational database contains data tables and other tables used to define terms, relationships between the data tables, and hierarchical relationships in the data; forms used to enter data; and queries used to extract data.
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Mapping critical loads of nitrogen deposition for aquatic ecosystems in the Rocky Mountains, USA
Nanus, Leora; Clow, David W.; Saros, Jasmine E.; Stephens, Verlin C.; Campbell, Donald H.
2012-01-01
Spatially explicit estimates of critical loads of nitrogen (N) deposition (CLNdep) for nutrient enrichment in aquatic ecosystems were developed for the Rocky Mountains, USA, using a geostatistical approach. The lowest CLNdep estimates (-1 yr-1) occurred in high-elevation basins with steep slopes, sparse vegetation, and abundance of exposed bedrock and talus. These areas often correspond with areas of high N deposition (>3 kg N ha-1 yr-1), resulting in CLNdep exceedances ≥1.5 ± 1 kg N ha-1 yr-1. CLNdep and CLNdep exceedances exhibit substantial spatial variability related to basin characteristics and are highly sensitive to the NO3- threshold at which ecological effects are thought to occur. Based on an NO3- threshold of 0.5 μmol L-1, N deposition exceeds CLNdep in 21 ± 8% of the study area; thus, broad areas of the Rocky Mountains may be impacted by excess N deposition, with greatest impacts at high elevations.
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Metamorphosis Is Ancestral for Crown Euarthropods, and Evolved in the Cambrian or Earlier.
Wolfe, Joanna M
2017-09-01
Macroevolutionary developmental biology employs fossilized ontogenetic data and phylogenetic comparative methods to probe the evolution of development at ancient nodes. Despite the prevalence of ecologically differentiated larval forms in marine invertebrates, it has been frequently presumed that the ancestors of arthropods were direct developers, and that metamorphosis may not have evolved until the Ordovician or later. Using fossils and new dated phylogenies, I infer that metamorphosis was likely ancestral for crown arthropods, contradicting this assumption. Based on a published morphological dataset encompassing 217 exceptionally preserved fossil and 96 extant taxa, fossils were directly incorporated into both the topology and age estimates, as in "tip dating" analyses. Using data from post-embryonic fossils representing 25 species throughout stem and crown arthropod lineages (as well as most of the 96 extant taxa), characters for metamorphosis were assigned based on inferred ecological changes in development (e.g., changes in habitat and adaptive landscape). Under all phylogenetic hypotheses, metamorphosis was supported as most likely ancestral to both ecdysozoans and euarthropods. Care must be taken to account for potential drastic post-embryonic morphological changes in evolutionary analyses. Many stem group euarthrpods may have had ecologically differentiated larval stages that did not preserve in the fossil record. Moreover, a complex life cycle and planktonic ecology may have evolved in the Ediacaran or earlier, and may have typified the pre-Cambrian explosion "wormworld" prior to the origin of crown group euarthropods. © The Author 2017. Published by Oxford University Press on behalf of the Society for Integrative and Comparative Biology. All rights reserved. For permissions please email: journals.permissions@oup.com.
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International Nuclear Information System (INIS)
Bowen, S.M.; Cisneros, M.R.; Jacobson, L.L.; Schroeder, N.C.; Ames, R.L.
1998-01-01
This report describes tests on a proposed flowsheet designed to stabilize combustible residues that were generated at the Rocky Flats Environmental Technology Site (RFETS) during the machining of plutonium metal. Combustible residues are essentially laboratory trash contaminated with halogenated organic solvents and plutonium metal. The proposed flowsheet, designed by RFETS, follows a glovebox procedure that includes (1) the sorting and shredding of materials, (2) a low temperature thermal desorption of solvents from the combustible materials, (3) an oxidation of plutonium metal with steam, and (4) packaging of the stabilized residues. The role of Los Alamos National Laboratory (LANL) in this study was to determine parameters for the low temperature thermal desorption and steam oxidation steps. Thermal desorption of carbon tetrachloride (CCl 4 ) was examined using a heated air stream on a Rocky Flats combustible residue surrogate contaminated with CCl 4 . Three types of plutonium metal were oxidized with steam in a LANL glovebox to determine the effectiveness of this procedure for residue stabilization. The results from these LANL experiments are used to recommend parameters for the proposed RFETS stabilization flowsheet
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Energy Technology Data Exchange (ETDEWEB)
NONE
1995-08-01
This is the seventh in a series of seven volumes which constitute a guide to records of the Rocky Flats Plant useful for conducting health-related research. The primary purpose of Volume VII is to describe record series pertaining to employee occupational exposure and health at the Department of Energy`s (DOE) Rocky Flats Plant, now named the Rocky Flats Environmental Technology Site, near Denver, Colorado. History Associates Incorporated (HAI) prepared this guide as part of its work as the support services contractor for DOE`s Epidemiologic Records Inventory Project. This introduction briefly describes the Epidemiologic Records Inventory Project and HAI`s role in the project, provides a history of occupational exposure monitoring and health practices at Rocky Flats, and identifies organizations contributing to occupational exposure monitoring and health policies and activities. Other topics include the scope and arrangement of the guide and the organization to contact for access to these records. Comprehensive introductory and background information is available in Volume 1. Other volumes in the guide pertain to administrative and general subjects, facilities and equipment, production and materials handling, environmental and workplace monitoring, and waste management. In addition, HAI has produced a subject-specific guide, titled The September 1957 Rocky Flats Fire: A Guide to Record Series of the Department of Energy and Its Contractors, which researchers should consult for further information about records related to this incident.
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Foods and nutritional components of diets of black bear in Rocky Mountain National Park, Colorado
Baldwin, R.A.; Bender, L.C.
2009-01-01
We used scat analysis to determine diets and relative nutritional values of diets for black bears (Ursus americanus Pallas, 1780) in Rocky Mountain National Park, Colorado, from 2003 to 2006, and compared foods consumed and nutritional components to identify important sources of fecal gross energy (GE), crude fat (CF), and fecal nitrogen (FN) in annual and seasonal diets. Patterns of use of food classes followed typical seasonal patterns for bears, although use of animal matter was among the highest reported (>49% annually). Use of animal matter increased after spring, although crude protein levels in bear diets were always >25%. GE was typically lowest for grasses and other herbaceous plants and highest for ants and ungulates; FN was strongly positively related to most animal sources, but negatively correlated with vegetative matter; and CF showed the strongest positive relationship with ungulates and berries, with the latter likely influenced by the presence of seeds. Compared with historic data (1984-1991), contemporary diets included substantially greater prevalence of anthropogenic foods, which likely contributed to increases in size, condition, and productivity of the contemporary bear population. Management strategies are needed to increase quantity and quality of natural foods while minimizing dependence on anthropogenic sources.
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Between a Rock and a Blue Chair: David Hockney’s Rocky Mountains and Tired Indians (1965
Directory of Open Access Journals (Sweden)
Martin Hammer
2017-04-01
Full Text Available Travel and cultural exchange between the United Kingdom and the United States of America became a key feature of the 1960s, shaping the world view of many a British artist, curator, architect, writer, film-maker, and academic. Against that wider backdrop, I offer here a focused reading of David Hockney’s 1965 painting, Rocky Mountains and Tired Indians. With its faux-naive idiom and overt but quirkily un-modern American theme, the work conveys the artist’s singular take on what it felt like to be a Brit at large in the US, an environment at once wondrously exotic and at times strikingly banal. Close analysis discloses Hockney’s rich repertoire of artistic and literary allusions in Rocky Mountains, and the meanings and associations these may have encapsulated.
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A Long, Winding (and Rocky) Road to Environmental Education for Sustainability in 2006
Gough, Annette
2006-01-01
This article charts the history of environmental education over four decades--from the 1960s to 2006--as a rocky road of determined chocolate with the possibilities of rocks (nuts) and easy passage (marshmallow). There were distractions such as suggestions of changing names and new directions (add fruit?) along the way but the road has continued…
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Patterns of resistance to Cronartium ribicola in Pinus aristata, Rocky Mountain bristlecone pine
A. W. Schoettle; R. A. Sniezko; A. Kegley; R. Danchok; K. S. Burns
2012-01-01
The core distribution of Rocky Mountain bristlecone pine, Pinus aristata Engelm., extends from central Colorado into northern New Mexico, with a disjunct population on the San Francisco Peaks in northern Arizona. Populations are primarily at high elevations and often define the alpine treeline; however, the species can also be found in open mixed conifer stands with...
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Rocky Planet Formation: Quick and Neat
Kenyon, Scott J.; Najita, Joan R.; Bromley, Benjamin C.
2016-11-01
We reconsider the commonly held assumption that warm debris disks are tracers of terrestrial planet formation. The high occurrence rate inferred for Earth-mass planets around mature solar-type stars based on exoplanet surveys (˜20%) stands in stark contrast to the low incidence rate (≤2%-3%) of warm dusty debris around solar-type stars during the expected epoch of terrestrial planet assembly (˜10 Myr). If Earth-mass planets at au distances are a common outcome of the planet formation process, this discrepancy suggests that rocky planet formation occurs more quickly and/or is much neater than traditionally believed, leaving behind little in the way of a dust signature. Alternatively, the incidence rate of terrestrial planets has been overestimated, or some previously unrecognized physical mechanism removes warm dust efficiently from the terrestrial planet region. A promising removal mechanism is gas drag in a residual gaseous disk with a surface density ≳10-5 of the minimum-mass solar nebula.
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NEPA/CERCLA integration at Rocky Flats
International Nuclear Information System (INIS)
Schassburger, R.J.
1991-01-01
Integration of two laws, the Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) and the National Environmental Policy Act (NEPA) was mandated by the US Department of Energy (DOE) with issuance of DOE Order 5400.4 in October 6, 1989. NEPA documentation is required for all federal actions to thereby consider the impacts of such actions prior to the action taking place. On the other hand, CERCLA actions taken by the US Environmental Protection Agency (EPA) at non-federal and federal sites do not normally take NEPA into consideration, although it is not exempted at federal sites. EPA claims that CERCLA is functionally equivalent to N-EPA and therefore NEPA is not required. Although EPA maintains the functional equivalency of the two laws and formerly resisted to recognize NEPA even in Inter-Agency Agreements (IAGs), Rocky Flats has been integrating the two laws within documents to avoid duplication of information and effort
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Rocky Mountain spotted fever in Argentina.
Paddock, Christopher D; Fernandez, Susana; Echenique, Gustavo A; Sumner, John W; Reeves, Will K; Zaki, Sherif R; Remondegui, Carlos E
2008-04-01
We describe the first molecular confirmation of Rickettsia rickettsii, the cause of Rocky Mountain spotted fever (RMSF), from a tick vector, Amblyomma cajennense, and from a cluster of fatal spotted fever cases in Argentina. Questing A. cajennense ticks were collected at or near sites of presumed or confirmed cases of spotted fever rickettsiosis in Jujuy Province and evaluated by polymerase chain reaction assays for spotted fever group rickettsiae. DNA of R. rickettsii was amplified from a pool of A. cajennense ticks and from tissues of one of four patients who died during 2003-2004 after illnesses characterized by high fever, severe headache, myalgias, and petechial rash. The diagnosis of spotted fever rickettsiosis was confirmed in the other patients by indirect immunofluorescence antibody and immunohistochemical staining techniques. These findings show the existence of RMSF in Argentina and emphasize the need for clinicians throughout the Americas to consider RMSF in patients with febrile rash illnesses.
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Caspeta, Luis; Nielsen, Jens
2015-07-21
A major challenge for the production of ethanol from biomass-derived feedstocks is to develop yeasts that can sustain growth under the variety of inhibitory conditions present in the production process, e.g., high osmolality, high ethanol titers, and/or elevated temperatures (≥ 40 °C). Using adaptive laboratory evolution, we previously isolated seven Saccharomyces cerevisiae strains with improved growth at 40 °C. Here, we show that genetic adaptations to high temperature caused a growth trade-off at ancestral temperatures, reduced cellular functions, and improved tolerance of other stresses. Thermotolerant yeast strains showed horizontal displacement of their thermal reaction norms to higher temperatures. Hence, their optimal and maximum growth temperatures increased by about 3 °C, whereas they showed a growth trade-off at temperatures below 34 °C. Computational analysis of the physical properties of proteins showed that the lethal temperature for yeast is around 49 °C, as a large fraction of the yeast proteins denature above this temperature. Our analysis also indicated that the number of functions involved in controlling the growth rate decreased in the thermotolerant strains compared with the number in the ancestral strain. The latter is an advantageous attribute for acquiring thermotolerance and correlates with the reduction of yeast functions associated with loss of respiration capacity. This trait caused glycerol overproduction that was associated with the growth trade-off at ancestral temperatures. In combination with altered sterol composition of cellular membranes, glycerol overproduction was also associated with yeast osmotolerance and improved tolerance of high concentrations of glucose and ethanol. Our study shows that thermal adaptation of yeast is suitable for improving yeast resistance to inhibitory conditions found in industrial ethanol production processes. Yeast thermotolerance can significantly reduce the production costs of biomass
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International Nuclear Information System (INIS)
Nelson, Jody K.
2013-01-01
Land stewardship is one of nine sustainability programs in the U.S. Department of Energy's Environmental Management System. Land stewardship includes maintaining and improving ecosystem health. At the Rocky Flats Site near Westminster, Colorado, land stewardship is an integral component of the Office of Legacy Management's post-closure monitoring and management at the site. Nearly 263 hectares (650 acres) were disturbed and re-vegetated during site cleanup and closure operations. Proactive management of revegetation areas is critical to the successful reestablishment of native grasslands, wetlands, and riparian communities. The undisturbed native plant communities that occur at the site also require active management to maintain the high-quality wetlands and other habitats that are home to numerous species of birds and other wildlife such as elk and deer, rare plant communities, and the federally listed threatened Preble's meadow jumping mouse. Over the past several decades, an increase of Noxious weeds has impacted much of Colorado's Front Range. As a result, weed control is a key component of the land stewardship program at Rocky Flats. Thirty-three species of state-listed Noxious weeds are known to occur in the Central and Peripheral Operable Units at Rocky Flats, along with another five species that are considered invasive at the site. Early detection and rapid response to control new invasive species is crucial to the program. An integrated weed control/vegetation management approach is key to maintaining healthy, sustainable plant communities that are able to resist Noxious weed invasions. Weed mapping, field surveys, and field-staff training sessions (to learn how to identify new potential problem species) are conducted to help detect and prevent new weed problems. The integrated approach at Rocky Flats includes administrative and cultural techniques (prevention), mechanical controls, biological controls, and chemical controls. Several species of biocontrol
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Origin of amphibian and avian chromosomes by fission, fusion, and retention of ancestral chromosomes
Voss, Stephen R.; Kump, D. Kevin; Putta, Srikrishna; Pauly, Nathan; Reynolds, Anna; Henry, Rema J.; Basa, Saritha; Walker, John A.; Smith, Jeramiah J.
2011-01-01
Amphibian genomes differ greatly in DNA content and chromosome size, morphology, and number. Investigations of this diversity are needed to identify mechanisms that have shaped the evolution of vertebrate genomes. We used comparative mapping to investigate the organization of genes in the Mexican axolotl (Ambystoma mexicanum), a species that presents relatively few chromosomes (n = 14) and a gigantic genome (>20 pg/N). We show extensive conservation of synteny between Ambystoma, chicken, and human, and a positive correlation between the length of conserved segments and genome size. Ambystoma segments are estimated to be four to 51 times longer than homologous human and chicken segments. Strikingly, genes demarking the structures of 28 chicken chromosomes are ordered among linkage groups defining the Ambystoma genome, and we show that these same chromosomal segments are also conserved in a distantly related anuran amphibian (Xenopus tropicalis). Using linkage relationships from the amphibian maps, we predict that three chicken chromosomes originated by fusion, nine to 14 originated by fission, and 12–17 evolved directly from ancestral tetrapod chromosomes. We further show that some ancestral segments were fused prior to the divergence of salamanders and anurans, while others fused independently and randomly as chromosome numbers were reduced in lineages leading to Ambystoma and Xenopus. The maintenance of gene order relationships between chromosomal segments that have greatly expanded and contracted in salamander and chicken genomes, respectively, suggests selection to maintain synteny relationships and/or extremely low rates of chromosomal rearrangement. Overall, the results demonstrate the value of data from diverse, amphibian genomes in studies of vertebrate genome evolution. PMID:21482624
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Wiring a periscope--ocelli, retinula axons, visual neuropils and the ancestrality of sea spiders.
Lehmann, Tobias; Hess, Martin; Melzer, Roland R
2012-01-01
The Pycnogonida or sea spiders are cryptic, eight-legged arthropods with four median ocelli in a 'periscope' or eye tubercle. In older attempts at reconstructing phylogeny they were Arthropoda incertae sedis, but recent molecular trees placed them as the sister group either to all other euchelicerates or even to all euarthropods. Thus, pycnogonids are among the oldest extant arthropods and hold a key position for the understanding of arthropod evolution. This has stimulated studies of new sets of characters conductive to cladistic analyses, e.g. of the chelifores and of the hox gene expression pattern. In contrast knowledge of the architecture of the visual system is cursory. A few studies have analysed the ocelli and the uncommon "pseudoinverted" retinula cells. Moreover, analyses of visual neuropils are still at the stage of Hanström's early comprehensive works. We have therefore used various techniques to analyse the visual fibre pathways and the structure of their interrelated neuropils in several species. We found that pycnogonid ocelli are innervated to first and second visual neuropils in close vicinity to an unpaired midline neuropil, i.e. possibly the arcuate body, in a way very similar to ancestral euarthropods like Euperipatoides rowelli (Onychophora) and Limulus polyphemus (Xiphosura). This supports the ancestrality of pycnogonids and sheds light on what eyes in the pycnogonid ground plan might have 'looked' like. Recently it was suggested that arthropod eyes originated from simple ocelli similar to larval eyes. Hence, pycnogonid eyes would be one of the early offshoots among the wealth of more sophisticated arthropod eyes.
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Wiring a periscope--ocelli, retinula axons, visual neuropils and the ancestrality of sea spiders.
Directory of Open Access Journals (Sweden)
Tobias Lehmann
Full Text Available The Pycnogonida or sea spiders are cryptic, eight-legged arthropods with four median ocelli in a 'periscope' or eye tubercle. In older attempts at reconstructing phylogeny they were Arthropoda incertae sedis, but recent molecular trees placed them as the sister group either to all other euchelicerates or even to all euarthropods. Thus, pycnogonids are among the oldest extant arthropods and hold a key position for the understanding of arthropod evolution. This has stimulated studies of new sets of characters conductive to cladistic analyses, e.g. of the chelifores and of the hox gene expression pattern. In contrast knowledge of the architecture of the visual system is cursory. A few studies have analysed the ocelli and the uncommon "pseudoinverted" retinula cells. Moreover, analyses of visual neuropils are still at the stage of Hanström's early comprehensive works. We have therefore used various techniques to analyse the visual fibre pathways and the structure of their interrelated neuropils in several species. We found that pycnogonid ocelli are innervated to first and second visual neuropils in close vicinity to an unpaired midline neuropil, i.e. possibly the arcuate body, in a way very similar to ancestral euarthropods like Euperipatoides rowelli (Onychophora and Limulus polyphemus (Xiphosura. This supports the ancestrality of pycnogonids and sheds light on what eyes in the pycnogonid ground plan might have 'looked' like. Recently it was suggested that arthropod eyes originated from simple ocelli similar to larval eyes. Hence, pycnogonid eyes would be one of the early offshoots among the wealth of more sophisticated arthropod eyes.
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Climate vulnerability of native cold-water salmonids in the Northern Rockies Region [Chapter 5
Michael K. Young; Daniel J. Isaak; Scott Spaulding; Cameron A. Thomas; Scott A. Barndt; Matthew C. Groce; Dona Horan; David E. Nagel
2018-01-01
During the 21st century, climate change is expected to alter aquatic habitats throughout the Northern Rocky Mountains, intermountain basins, and western Great Plains. Particularly in montane watersheds, direct changes are likely to include warmer water temperatures, earlier snowmelt-driven runoff, earlier declines to summer baseflow, downhill movement of perennial...
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vonHoldt, Bridgett M; Stahler, Daniel R; Bangs, Edward E; Smith, Douglas W; Jimenez, Mike D; Mack, Curt M; Niemeyer, Carter C; Pollinger, John P; Wayne, Robert K
2010-10-01
The successful re-introduction of grey wolves to the western United States is an impressive accomplishment for conservation science. However, the degree to which subpopulations are genetically structured and connected, along with the preservation of genetic variation, is an important concern for the continued viability of the metapopulation. We analysed DNA samples from 555 Northern Rocky Mountain wolves from the three recovery areas (Greater Yellowstone Area, Montana, and Idaho), including all 66 re-introduced founders, for variation in 26 microsatellite loci over the initial 10-year recovery period (1995-2004). The population maintained high levels of variation (H(O) = 0.64-0.72; allelic diversity k=7.0-10.3) with low levels of inbreeding (F(IS) wolves will rely on management decisions that promote natural dispersal dynamics and minimize anthropogenic factors that reduce genetic connectivity. © 2010 Blackwell Publishing Ltd.
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Causon Deguara, Joanna; Gauci, Ritienne
2017-04-01
Rocky coasts are considered as relatively stable coastlines, subject to erosional processes that change the landscape over long periods of time. Block quarrying is one such process, occurring when hydraulic pressure from wave impact dislodges boulders from within the outcropping bedrock. These dislodged boulders can be either deposited inland or dragged seaward by further wave action. This process can be evidenced from boulder deposits on the coast, as well as sockets and detachment scarps that are identified at the shoreline and in the backshore. This study seeks to identify the role of attributes such as aspect, geological structure and water depth have on erosion of rocky coasts through boulder quarrying processes. This is being done through observation of coastline morphology and an analysis of boulder accumulations and erosional features identified on a 3km stretch of rocky shore. The study area is situated on the SE coast of the Island of Malta (Central Mediterranean). The coastline being analysed generally trends NW - SE and consists of a series of limestone beds that dip slightly towards the NE. The boulder deposits observed along the site vary in size, quantity and position with respect to the shoreline. Whilst some areas exhibit large boulder accumulations, other areas are distinguished by the complete absence of such deposits. Taking into consideration the wave climate, the variable size, quantity and distribution of boulder accumulations observed along the site may indicate that geological structure and aspect play an important role in boulder dislodgment by wave action. Key words: rock coast, boulder quarrying, erosional process, Malta
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Glen Dowell; Robert J. David
2011-01-01
Until 1993, all liquor stores in the Canadian province of Alberta were government owned and run. In the fall of 1993, the provincial government exited liquor retailing, all government stores were shut down, and entrepreneurs were allowed to open private liquor stores. In this article, we take advantage of this abrupt regulatory change in the Alberta liquor-retailing industry to address two related issues that have received little empirical attention. First, we investigate how an ancestral pop...
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Anselmetti, Yoann; Duchemin, Wandrille; Tannier, Eric; Chauve, Cedric; Bérard, Sèverine
2018-05-09
Genomes rearrangements carry valuable information for phylogenetic inference or the elucidation of molecular mechanisms of adaptation. However, the detection of genome rearrangements is often hampered by current deficiencies in data and methods: Genomes obtained from short sequence reads have generally very fragmented assemblies, and comparing multiple gene orders generally leads to computationally intractable algorithmic questions. We present a computational method, ADSEQ, which, by combining ancestral gene order reconstruction, comparative scaffolding and de novo scaffolding methods, overcomes these two caveats. ADSEQ provides simultaneously improved assemblies and ancestral genomes, with statistical supports on all local features. Compared to previous comparative methods, it runs in polynomial time, it samples solutions in a probabilistic space, and it can handle a significantly larger gene complement from the considered extant genomes, with complex histories including gene duplications and losses. We use ADSEQ to provide improved assemblies and a genome history made of duplications, losses, gene translocations, rearrangements, of 18 complete Anopheles genomes, including several important malaria vectors. We also provide additional support for a differentiated mode of evolution of the sex chromosome and of the autosomes in these mosquito genomes. We demonstrate the method's ability to improve extant assemblies accurately through a procedure simulating realistic assembly fragmentation. We study a debated issue regarding the phylogeny of the Gambiae complex group of Anopheles genomes in the light of the evolution of chromosomal rearrangements, suggesting that the phylogenetic signal they carry can differ from the phylogenetic signal carried by gene sequences, more prone to introgression.
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2011-05-10
... DEPARTMENT OF TRANSPORTATION Surface Transportation Board [Docket No. FD 35501] Carolina Coastal Railway, Inc.--Acquisition and Operation Exemption--Rocky Mount & Western Railroad Co., Inc. d/b/a Nash County Railroad Carolina Coastal Railway, Inc. (CLNA), a Class III rail carrier, has filed a verified...
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The Rocky Flats Environmental Technology Site beryllium characterization project
International Nuclear Information System (INIS)
Morrell, D.M.; Miller, J.R.; Allen, D.F.
1999-01-01
A site beryllium characterization project was completed at the Rocky Flats Environmental Technology Site (RFETS) in 1997. Information from historical reviews, previous sampling surveys, and a new sampling survey were used to establish a more comprehensive understanding of the locations and levels of beryllium contamination in 35 buildings. A feature of the sampling strategy was to test if process knowledge was a good predictor of where beryllium contamination could be found. Results revealed that this technique was effective at identifying where surface contamination levels might exceed the RFETS smear control level but that it was not effective in identifying where low concentrations of beryllium might be found
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Recovery of plutonium from incinerator ash at Rocky Flats
International Nuclear Information System (INIS)
Johnson, T.C.
1976-01-01
Incineration of combustible materials highly contaminated with plutonium produces a residue of incinerator ash. Recovery of plutonium from incinerator ash residues at Rocky Flats is accomplished by a continuous leaching operation with nitric acid containing fluoride ion. Special equipment used in the leaching operation consists of a screw feeder, air-lift dissolvers, filters, solids dryer, and vapor collection system. Each equipment item is described in detail. The average dissolution efficiency of plutonium experienced with the process was 68% on the first pass, 74% on the second pass, and 64% on each subsequent pass. Total-solids dissolution efficiencies averaged 47% on the first pass and about 25% on each subsequent pass
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Here today, here tomorrow: Managing forests for fisher habitat in the Northern Rockies
Sue Miller; Michael Schwartz; Lucretia E. Olson
2016-01-01
The fisher is a unique member of the weasel family and a sensitive species in the northern Rockies. They were almost extirpated by trapping in the early twentieth century, but these animals (a mix between a native and introduced population) now inhabit a swath of mesic coniferous forests in Idaho and Montana. Forest managers need information on fisher distribution and...
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Energy Technology Data Exchange (ETDEWEB)
Melis, Carl [Center for Astrophysics and Space Sciences, University of California, San Diego, CA 92093-0424 (United States); Dufour, P., E-mail: cmelis@ucsd.edu [Institut de Recherche sur les Exoplanètes (iREx), Université de Montréal, Montréal, QC H3C 3J7 (Canada)
2017-01-01
We present spectroscopic observations of the dust- and gas-enshrouded, polluted, single white dwarf star SDSS J104341.53+085558.2 (hereafter SDSS J1043+0855). Hubble Space Telescope Cosmic Origins Spectrograph far-ultraviolet spectra combined with deep Keck HIRES optical spectroscopy reveal the elements C, O, Mg, Al, Si, P, S, Ca, Fe, and Ni and enable useful limits for Sc, Ti, V, Cr, and Mn in the photosphere of SDSS J1043+0855. From this suite of elements we determine that the parent body being accreted by SDSS J1043+0855 is similar to the silicate Moon or the outer layers of Earth in that it is rocky and iron-poor. Combining this with comparison to other heavily polluted white dwarf stars, we are able to identify the material being accreted by SDSS J1043+0855 as likely to have come from the outermost layers of a differentiated object. Furthermore, we present evidence that some polluted white dwarfs (including SDSS J1043+0855) allow us to examine the structure of differentiated extrasolar rocky bodies. Enhanced levels of carbon in the body polluting SDSS J1043+0855 relative to the Earth–Moon system can be explained with a model where a significant amount of the accreted rocky minerals took the form of carbonates; specifically, through this model the accreted material could be up to 9% calcium-carbonate by mass.
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Development of State Interindustry Models for Rocky Mountain Region and California
Energy Technology Data Exchange (ETDEWEB)
Sathaye, Jayant A.; Kunin, Leonard
1976-02-01
Interindustry tables have been developed for the eight Rocky Mountain States and California. These tables are based on the 367-order 1967 national interindustry table. The national matrix was expanded to 404 sectors by disaggregating the seven minerals industries to 44 industries. The state tables can be used for energy and other resource analysis. Regional impacts of alternate development strategies can be evaluated with their use. A general computer program has been developed to facilitate construction of state interindustry tables.
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Demonstration tools for the facility/land use planning process at Rocky Flats
International Nuclear Information System (INIS)
Ryan, K.B.
1994-01-01
The new mission for the Rocky Flats Site states, open-quotes Manage waste and materials, clean up and convert the Rocky Flats Site to beneficial use in a manner that is safe, environmentally and socially responsible, physical secure, and cost-effective.close quotes. In addition, community recognition and support is encouraged and expected. To accomplish this ambitious mission of converting to another use and incorporating stakeholder input, many tools must be developed. These tools must be clearly understandable and readily available, with the hope and plan that similar outcomes will be much more apparent if the same or similar tools are applied by all decision markers, both internal and external. Since the task is monumental and extremely complex, establishing and understanding these available tools early in the planning process is important. All decision makers must be identified and the availability of the tools should be shared to eliminate redundancy and expedite the planning process. Most documents utilized for decision making are very technical in nature. Since numerous and varied stakeholders will be involved, these documents must be socialized or open-quotes detechnicalized.close quotes This paper discusses developing internal and universally acceptable demonstration tools for explaining how facilities and land will be analyzed for constraints and opportunities during the planning process
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International Nuclear Information System (INIS)
1982-06-01
Research conducted to clarify the socioeconomic impacts on the Denver-Boulder area of potential changes in missions at the Rocky Flats Plant and the mitigation measures taken to contain these impacts are described. Two primary alternatives have been examined, including the relocation of certain activities associated with radioactive materials, as well as a total phase out of the plant over the next decade. These perspectives include an assessment of alternative uses for Rocky Flats by both governmental agencies and private sector developers. Major findings address location, employment, public involvement, private enterprises, community attitudes, employee relocation; land use; and environment
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International Nuclear Information System (INIS)
1982-09-01
An aerial radiological survey of the Rocky Flats Plant was conducted during August 1981. The survey consisted of an airborne measurement of both natural and man-made gamma radiation from the terrain surface in and around the Rocky Flats Plant. These measurements allowed an estimate of the distribution of isotope concentrations in the survey area. Results are reported as exposure rate, man-made, and 241 Am isopleths superimposed on photographs of the area. The survey covered a square area approximately 9.7 km on each side. Gamma ray energy spectra are also presented for the net man-made radionuclides
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Foster, A.; Shuman, J. K.; Shugart, H. H., Jr.; Dwire, K. A.; Fornwalt, P.; Sibold, J.; Negrón, J. F.
2016-12-01
Forests in the Rocky Mountains are a crucial part of the North American carbon budget, but increases in disturbances such as insect outbreaks and fire, in conjunction with climate change, threaten their vitality. Mean annual temperatures in the western United States have increased by 2°C since 1950 and the higher elevations are warming faster than the rest of the landscape. It is predicted that this warming trend will continue, and that by the end of this century, nearly 50% of the western US landscape will have climate profiles with no current analog within that region. Individual tree-based modeling allows various climate change scenarios and their effects on forest dynamics to be tested. We use an updated individual-based gap model, the University of Virginia Forest Model Enhanced (UVAFME) at a subalpine site in the southern Rocky Mountains. UVAFME has been quantitatively and qualitatively validated in the southern Rocky Mountains, and results show that UVAFME-output on size structure, biomass, and species composition compares reasonably to inventory data and descriptions of vegetation zonation and successional dynamics for the region. We perform a climate sensitivity test in which temperature is first increased linearly by 2°C over 100 years, stabilized for 200 years, cooled back to present climate values over 100 years, and again stabilized for 200 years. This test is conducted to determine what effect elevated temperatures may have on vegetation zonation, and how persistent the changes may be if the climate is brought back to its current state. Results show that elevated temperatures within the southern Rocky Mountains may lead to decreases in biomass and changes in species composition as species migrate upslope. These changes are also likely to be fairly persistent for at least one- to two-hundred years. The results from this study suggest that UVAFME and other individual-based gap models can be used to inform forest management and climate mitigation
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Samuel A. Cushman; Erin L. Landguth; Curtis H. Flather
2012-01-01
Aim: The goal of this study was to evaluate the sufficiency of the network of protected lands in the U.S. northern Rocky Mountains in providing protection for habitat connectivity for 105 hypothetical organisms. A large proportion of the landscape...
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Fish assemblage structure and relations with environmental conditions in a Rocky Mountain watershed
Quist, M.C.; Hubert, W.A.; Isaak, D.J.
2004-01-01
Fish and habitat were sampled from 110 reaches in the Salt River basin (Idaho and Wyoming) during 1996 and 1997 to assess patterns in fish assemblage structure across a Rocky Mountain watershed. We identified four distinct fish assemblages using cluster analysis: (1) allopatric cutthroat trout (Oncorhynchus clarki (Richardson, 1836)); (2) cutthroat trout - brook trout (Salvelinus fontinalis (Mitchell, 1814)) - Paiute sculpin (Cottus beldingi Eigenmann and Eigenmann, 1891); (3) cutthroat trout - brown trout (Salmo trutta L., 1758) - mottled sculpin (Cottus bairdi Girard, 1850); and (4) Cyprinidae-Catostomidae. The distribution of fish assemblages was explained by thermal characteristics, stream geomorphology, and local habitat features. Reaches with allopatric cutthroat trout and the cutthroat trout - brook trout - Paiute sculpin assemblage were located in high-elevation, high-gradient streams. The other two fish assemblages were generally located in low-elevation streams. Associations between habitat gradients, locations of reaches in the watershed, and occurrence of species were further examined using canonical correspondence analysis. The results suggest that stream geomorphology, thermal conditions, and local habitat characteristics influence fish assemblage structure across a Rocky Mountain watershed, and they provide information on the ecology of individual species that can guide conservation activities. ?? 2004 NRC Canada.
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International Nuclear Information System (INIS)
Chiba, Z.; Lewis, P.R.; Kahle, R.W.
1993-03-01
The Mediated Electrochemical Oxidation (MEO) process was studied for destroying low-level combustible mixed wastes at Rocky Flats (RFP). Tests were performed with nonradioactive surrogate materials: Trimsol for the contaminated oils, and reagent-grade cellulose for the cellulosic wastes. Extensive testing was carried out on Trimsol in both small laboratory-scale apparatus and on a large-scale system incorporating an industrial-size electrochemical cell. Preliminary tests were also carried out in the small-scale system with cellulose. The following operating and system parameters were studied: use of a silver-nitric acid versus a cobalt-sulfuric acid system, effect of electrolyte temperature, effect of acid concentration, effect of current density, and use of ultrasonic agitation. Destruction and coulombic efficiencies were calculated using data obtained from continuous carbon dioxide monitors and total organic carbon (TOC) analysis of electrolyte samples. For Trimsol, the best performance was achieved with the silver-nitrate system at high acid concentrations, temperatures, and current densities. Destruction efficiencies of 98% or greater and coulombic efficiencies close to 50% were obtained in both small- and large-scale systems. For the cellulose, high destruction efficiencies and reasonable coulombic efficiencies were obtained for both silver-nitrate and cobalt-sulfate systems
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Karlin, Eric F; Smouse, Peter E
2017-08-01
Allopolyploids exhibit both different levels and different patterns of genetic variation than are typical of diploids. However, scant attention has been given to the partitioning of allelic information and diversity in allopolyploids, particularly that among homeologous monoploid components of the hologenome. Sphagnum × falcatulum is a double allopolyploid peat moss that spans a considerable portion of the Holantarctic. With monoploid genomes from three ancestral species, this organism exhibits a complex evolutionary history involving serial inter-subgeneric allopolyploidizations. Studying populations from three disjunct regions [South Island (New Zealand); Tierra de Fuego archipelago (Chile, Argentina); Tasmania (Australia)], allelic information for five highly stable microsatellite markers that differed among the three (ancestral) monoploid genomes was examined. Using Shannon information and diversity measures, the holoploid information, as well as the information within and among the three component monoploid genomes, was partitioned into separate components for individuals within and among populations and regions, and those information components were then converted into corresponding diversity measures. The majority (76 %) of alleles detected across these five markers are most likely to have been captured by hybridization, but the information within each of the three monoploid genomes varied, suggesting a history of recurrent allopolyploidization between ancestral species containing different levels of genetic diversity. Information within individuals, equivalent to the information among monoploid genomes (for this dataset), was relatively stable, and represented 83 % of the grand total information across the Holantarctic, with both inter-regional and inter-population diversification each accounting for about 5 % of the total information. Sphagnum × falcatulum probably inherited the great majority of its genetic diversity at these markers by reticulation
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CERN. Geneva
2017-01-01
Today, great efforts are made to detect Earth-mass rocky planets in the so-called habitable zone of their host stars. What are the difficulties, the instrumental projects and the already detected interesting systems ?
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Directory of Open Access Journals (Sweden)
Craig L. Shafer
2015-01-01
Full Text Available The grizzly bear (Ursus arctos horribilis population in the Greater Yellowstone Ecosystem (GYE is perceived to have been isolated from the population in the Northern Continental Divide Ecosystem for a century. Better land use planning is needed to thwart progressive intra- and inter-ecosystem habitat fragmentation, especially due to private land development. The dilemma of private lands being intermixed in large landscapes is addressed. This review attempts to identify some land use planning levels and tools which might facilitate dispersal by the grizzly bear and other large mammals. The planning levels discussed include national, regional, state, county and municipal, and federal land management agency. Specific potential federal tools mentioned include zoning, Landscape Conservation Cooperatives, the Endangered Species Act, beyond boundary authority, land exchanges, less-than-fee acquisition and other incentives, the Northern Rockies Ecosystem Protection Act, and federal land annexation. Besides summarizing existing recommendations, some derived observations are offered.
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Excess unsupported sup(210)Pb in lake sediment from Rocky Mountain lakes
International Nuclear Information System (INIS)
Norton, S.A.; Hess, C.T.; Blake, G.M.; Morrison, M.L.; Baron, J.
1985-01-01
Sediment cores from four high-altitude (approximately 3200 m) lakes in Rocky Mountain National Park, Colorado, were dated by sup(210)Pb chronology. Background (supported) sup(210)Pb activities for the four cores range from 0.26 to 0.93 Beq/g dry weight, high for typical oligotrophic lakes. Integrated unsupported sup(210)Pb ranges from 0.81 (a typical value for most lakes) to 11.0 Beq/cmsup(2). The sup(210)Pb activity in the surface sediments ranges from 1.48 to 22.2 Beq/g dry weight. Sedimentation from Lake Louise, the most unusual of the four, has 22.2 Beq/g dry weight at the sediment surface, an integrated unsupported sup(210)Pb=11.0 Beq/cmsup(2), and supported sup(210)Pb=0.74 Beq/g dry weight. sup(226)Ra content of the sediment is insufficient to explain either the high unsupported sup(210)Pb or the sup(222)Rn content of the water column of Lake Louise, which averaged 96.2 Beq/L. We concluded that sup(222)Rn-rich groundwater entering the lake is the source of the high sup(222)Rn in the water column. This, in turn, is capable of supporting the unusually high sup(210)Pb flux to the sediment surface. Groundwater with high sup(222)Rn may control the sup(210)Pb budget of lakes where sediment cores have integrated unsupported sup(210)Pb greater than 2 Beq/cmsup(2)
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Ancestral Variations of the PCDHG Gene Cluster Predispose to Dyslexia in a Multiplex Family
Directory of Open Access Journals (Sweden)
Teesta Naskar
2018-02-01
Full Text Available Dyslexia is a heritable neurodevelopmental disorder characterized by difficulties in reading and writing. In this study, we describe the identification of a set of 17 polymorphisms located across 1.9 Mb region on chromosome 5q31.3, encompassing genes of the PCDHG cluster, TAF7, PCDH1 and ARHGAP26, dominantly inherited with dyslexia in a multi-incident family. Strikingly, the non-risk form of seven variations of the PCDHG cluster, are preponderant in the human lineage, while risk alleles are ancestral and conserved across Neanderthals to non-human primates. Four of these seven ancestral variations (c.460A > C [p.Ile154Leu], c.541G > A [p.Ala181Thr], c.2036G > C [p.Arg679Pro] and c.2059A > G [p.Lys687Glu] result in amino acid alterations. p.Ile154Leu and p.Ala181Thr are present at EC2: EC3 interacting interface of γA3-PCDH and γA4-PCDH respectively might affect trans-homophilic interaction and hence neuronal connectivity. p.Arg679Pro and p.Lys687Glu are present within the linker region connecting trans-membrane to extracellular domain. Sequence analysis indicated the importance of p.Ile154, p.Arg679 and p.Lys687 in maintaining class specificity. Thus the observed association of PCDHG genes encoding neural adhesion proteins reinforces the hypothesis of aberrant neuronal connectivity in the pathophysiology of dyslexia. Additionally, the striking conservation of the identified variants indicates a role of PCDHG in the evolution of highly specialized cognitive skills critical to reading.
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Prato, Tony; Fagre, Daniel B.
2007-01-01
Prato and Fagre offer the first systematic, multi-disciplinary assessment of the challenges involved in managing the Crown of the Continent Ecosystem ( CCE), an area of the Rocky Mountains that includes northwestern Montana, southwestern Alberta, and southeastern British Columbia. The spectacular landscapes, extensive recreational options, and broad employment opportunities of the CCE have made it one of the fastest growing regions in the United States and Canada, and have lead to a shift in its economic base from extractive resource industries to service-oriented recreation and tourism industries. In the process, however, the amenities and attributes that draw people to this “New West” are under threat. Pastoral scenes are disappearing as agricultural lands and other open spaces are converted to residential uses, biodiversity is endangered by the fragmentation of fish and wildlife habitats, and many areas are experiencing a decline in air and water quality. Sustaining Rocky Mountain Landscapes provides a scientific basis for communities to develop policies for managing the growth and economic transformation of the CCE without sacrificing the quality of life and environment for which the land is renowned. This forthcoming edited volume focuses on five aspects of sustaining mountain landscapes in the CCE and similar regions in the Rocky Mountains. The five aspects are: 1) how social, economic, demo graphic and environmental forces are transforming ecosystem structure and function, 2) trends in use and conditions for human and environmental resources, 3) activating science, policy and education to enhance sustainable landscape management, 4) challenges to sustainable management of public and private lands, and 5) future prospects for achieving sustainable landscapes.
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Effects of climate change and wildfire on soil loss in the Southern Rockies Ecoregion
S. E. Litschert; D. M. Theobald; T. C. Brown
2014-01-01
Forests in the Southern Rockies Ecoregion surround the headwaters of several major rivers in the western and central US. Future climatic changes will increase the incidence of wildfire in those forests, and will likely lead to changes in downstream water quality, including sediment loads.We estimated soil loss under the historic climate and two IPCC climate change...
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Why replication is important in landscape genetics: American black bear in the Rocky Mountains
R. A. Short Bull; Samuel Cushman; R. Mace; T. Chilton; K. C. Kendall; E. L. Landguth; Michael Schwartz; Kevin McKelvey; Fred W. Allendorf; G. Luikart
2011-01-01
We investigated how landscape features influence gene flow of black bears by testing the relative support for 36 alternative landscape resistance hypotheses, including isolation by distance (IBD) in each of 12 study areas in the north central U.S. Rocky Mountains. The study areas all contained the same basic elements, but differed in extent of forest fragmentation,...
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Biochar effects on the nursery propagation of 4 northern Rocky Mountain native plant species
Clarice P. Matt; Christopher R. Keyes; R. Kasten Dumroese
2018-01-01
Biochar has emerged as a promising potential amendment of soilless nursery media for plant propagation. With this greenhouse study we used biochar to displace standard soilless nursery media at 4 rates (0, 15, 30, and 45% [v:v]) and then examined media chemistry, irrigation frequency, and the growth of 4 northern Rocky Mountain native plant species: Clarkia pulchella...
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Directory of Open Access Journals (Sweden)
D. T. Bautdinov
2016-01-01
Full Text Available Objectives. The aim of this study consists ina parametric analysis of the stress state of transversely isotropic rocky ground in the vicinity of a circular cross-sectional hydraulic tunnel taking into account the dead load of the subsoil medium under various relations of the elastic characteristics of the subsoil environment in orthogonal directions and at different angles of inclination of the plane of isotropy. Methods. A transversely isotropic medium model (a special case of an anisotropic medium is applied, in which the subsoil in one plane has the characteristics of an isotropic medium (isotropic plane but in a perpendicular direction – in contradistinction to the characteristics of an isotropic medium.The angle of isotropic planar inclination models the oblique bedding of subsoil layers. Results. The determination of tangential stresses on the contour generation allows the strength of the subsoil medium to be estimated at different depths of emplacement. The calculation of extensive hydraulic engineering tunnels, constructed in strong, transversely isotropic rocky ground, is reduced to a problem of plane strain elasticity theory for a transversely isotropic medium surrounding the tunnel construction. Since the solution of this problem cannot be achieved using analytical methods, the analysis of the stress state was carried out by finite element method using the ANSYS software complex. The type and size of the finite element appropriate for the calculation were pre-identified based on solutions to the task of verification. For the verificatory task, the Kirsch problem was adopted. Conclusion.When designing underground structures, it is necessary to determine the physical and mechanical properties of rocky soils in greater detail and to pay special attention to the elastic characteristics. The absence of tensile stresses in the upper section of development with some relations of the moduli of deformation and Poisson's ratios benefit the
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Directory of Open Access Journals (Sweden)
Juniator Tulius
2016-07-01
Full Text Available This paper examines some significant elements of the pig story (tiboi sakkoko. This tale contains crucial information about the collective identity, ancestors and historical events affecting particular Mentawai kin-groups. As families do not preserve their culture and traditions in written form, storytellers of kin-groups have narrated the pig story from generation to generation so as to preserve it carefully. In the course of time, storytellers establish particular ways of telling their stories so as to remember the content and plot of the stories easily. Through the pig story, members of kin groups also recollect their ancestral place of origin and plots of ancestral lands. The role of human memory is indispensable to recalling all these important elements. Therefore, this paper analyses memories of the past of different family generations. To achieve its aims, this paper also evaluates the roles of family stories in the culture and traditions of Mentawai society.
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Energy Technology Data Exchange (ETDEWEB)
NONE
1995-07-19
The primary purpose of this guide is to help the DOE locate and make available information relating to the 1957 Rocky Flats fire. The records are arranged into six categories: administrative and general; facilities and equipment; production and materials handling; waste management; workplace and environmental monitoring; and employee occupational exposure and health. A brief explanation of each category follows. The administrative and general section pertains to the administration of individual contractor organizations and DOE divisions at Rocky Flats. It also contains records which encompass several different subject areas and therefore can not be placed in a single category. The facilities and equipment category relates to the routine construction and maintenance of plant buildings as well as the purchase and installation of equipment. The production and materials handling records relate primarily to the inventory and production of nuclear materials and weapons components. The waste management records series found under this heading relate to the storage, handling, treatment, and disposal of radioactive, chemical or mixed materials produced or used at Rocky Flats. The records consist mostly of waste sampling and shipment records. The workplace and environmental monitoring records series found in this section pertain to monitoring of the workplace. The section also includes records that document efforts to monitor the environment outside of buildings, either onsite or offsite. Records in this category consist of sampling data and environmental impact reports. The employee occupational exposure and health section pertains to documentation relating to the health and occupational exposures of employees and visitors at Rocky Flats. Records series consist generally of dosimeter data, radiation exposure records, and medical records. Many of the records contain personal data pertaining to individual employees and may therefore be Privacy Act systems and records.
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International Nuclear Information System (INIS)
McKinley, K.B.; Nielsen, T.H.
1989-01-01
This paper reports how the Rocky Flats RCRA/CERCLA group at the Rocky Flats Plant in Golden, Colorado is developing a computerized schedule and budget management system. The system will aggregate schedule, budgets, and regulatory commitments provided by RCRA/CERCLA program managers. The system will provide tabular and graphical representations of the schedule and budget information at various levels of detail. The system will perform a variety of analyses on the schedule and budget. The RCRA/CERCLA group will use the results to develop realistic compliance schedules and the budgets necessary to meet them. Presentation of the schedules and budgets in a consistent graphical and tabular form will give a good appreciation of the remediation costs as understood by the RCRA/CERCLA group. The system will then be used to test resource availability and remediation period scenarios, differing from the optimal combination as determined by the RCRA/CERCLA group
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The HARPS-N Rocky Planet Search
DEFF Research Database (Denmark)
Motalebi, F.; Udry, S.; Gillon, M.
2015-01-01
We know now from radial velocity surveys and transit space missions that planets only a few times more massive than our Earth are frequent around solar-type stars. Fundamental questions about their formation history, physical properties, internal structure, and atmosphere composition are, however......, still to be solved. We present here the detection of a system of four low-mass planets around the bright (V = 5.5) and close-by (6.5 pc) star HD 219134. This is the first result of the Rocky Planet Search programme with HARPS-N on the Telescopio Nazionale Galileo in La Palma. The inner planet orbits...... on a close-in, quasi-circular orbit with a period of 6.767 ± 0.004 days. The third planet in the system has a period of 46.66 ± 0.08 days and a minimum-mass of 8.94 ± 1.13 M⊕, at 0.233 ± 0.002 AU from the star. Its eccentricity is 0.46 ± 0.11. The period of this planet is close to the rotational period...
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Anna W. Schoettle; Betsy A. Goodrich; Valerie Hipkins; Christopher Richards; Julie Kray
2012-01-01
Pinus aristata Engelm., Rocky Mountain bristlecone pine, has a narrow core geographic and elevational distribution, occurs in disjunct populations, and is threatened by rapid climate change, white pine blister rust, and bark beetles. Knowledge of genetic diversity and population structure will help guide gene conservation strategies for this species. Sixteen sites...
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Community Surveys: Low Dose Radiation. Fernald, Ohio and Rocky Flats, Colorado
Energy Technology Data Exchange (ETDEWEB)
C. K. Mertz; James Flynn; Donald G. MacGregor; Theresa Satterfield; Stephen M. Johnson; Seth Tuler; Thomas Webler
2002-10-16
This report is intended to present a basic description of the data from the two community surveys and to document the text of the questions; the methods used for the survey data collection; and a brief overview of the results. Completed surveys were conducted at local communities near the Rocky Flats, Colorado and the Fernald, Ohio sites; no survey was conducted for the Brookhaven, New York site. Fernald. The Fernald sample was randomly selected from 98% of all potential residential telephones in the townships of Ross, Morgan, and Crosby. The only telephone exchanges not used for the Fernald study had 4%, or fewer, of the holders of the telephone numbers actually living in either of the three target townships. Surveying started on July 24, 2001 and finished on August 30, 2001. A total of 399 completed interviews were obtained resulting in a CASRO response rate of 41.8%. The average length of an interview was 16.5 minutes. Rocky Flats. The sample was randomly selected from all potential residential telephones in Arvada and from 99% of the potential telephones in Westminster. Surveying started on August 10, 2001 and finished on September 25, 2001. A total of 401 completed interviews were obtained with a CASRO response rate of 32.5%. The average length of an interview was 15.7 minutes. Overall, respondents hold favorable views of science. They indicate an interest in developments in science and technology, feel that the world is better off because of science, and that science makes our lives healthier, easier, and more comfortable. However, respondents are divided on whether science should decide what is safe or not safe for themselves and their families. The majority of the respondents think that standards for exposure to radiation should be based on what science knows about health effects of radiation and on what is possible with today's technology. Although few respondents had visited the sites, most had heard or read something about Fernald or Rocky Flat s in
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Community Surveys: Low Dose Radiation. Fernald, Ohio and Rocky Flats, Colorado
International Nuclear Information System (INIS)
C. K. Mertz; James Flynn; Donald G. MacGregor; Theresa Satterfield; Stephen M. Johnson; Seth Tuler; Thomas Webler email ckmertz@decisionresearch.org
2002-01-01
This report is intended to present a basic description of the data from the two community surveys and to document the text of the questions; the methods used for the survey data collection; and a brief overview of the results. Completed surveys were conducted at local communities near the Rocky Flats, Colorado and the Fernald, Ohio sites; no survey was conducted for the Brookhaven, New York site. Fernald. The Fernald sample was randomly selected from 98% of all potential residential telephones in the townships of Ross, Morgan, and Crosby. The only telephone exchanges not used for the Fernald study had 4%, or fewer, of the holders of the telephone numbers actually living in either of the three target townships. Surveying started on July 24, 2001 and finished on August 30, 2001. A total of 399 completed interviews were obtained resulting in a CASRO response rate of 41.8%. The average length of an interview was 16.5 minutes. Rocky Flats. The sample was randomly selected from all potential residential telephones in Arvada and from 99% of the potential telephones in Westminster. Surveying started on August 10, 2001 and finished on September 25, 2001. A total of 401 completed interviews were obtained with a CASRO response rate of 32.5%. The average length of an interview was 15.7 minutes. Overall, respondents hold favorable views of science. They indicate an interest in developments in science and technology, feel that the world is better off because of science, and that science makes our lives healthier, easier, and more comfortable. However, respondents are divided on whether science should decide what is safe or not safe for themselves and their families. The majority of the respondents think that standards for exposure to radiation should be based on what science knows about health effects of radiation and on what is possible with today's technology. Although few respondents had visited the sites, most had heard or read something about Fernald or Rocky Flat s in the
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Wiring a Periscope – Ocelli, Retinula Axons, Visual Neuropils and the Ancestrality of Sea Spiders
Lehmann, Tobias; Heß, Martin; Melzer, Roland R.
2012-01-01
The Pycnogonida or sea spiders are cryptic, eight-legged arthropods with four median ocelli in a ‘periscope’ or eye tubercle. In older attempts at reconstructing phylogeny they were Arthropoda incertae sedis, but recent molecular trees placed them as the sister group either to all other euchelicerates or even to all euarthropods. Thus, pycnogonids are among the oldest extant arthropods and hold a key position for the understanding of arthropod evolution. This has stimulated studies of new sets of characters conductive to cladistic analyses, e.g. of the chelifores and of the hox gene expression pattern. In contrast knowledge of the architecture of the visual system is cursory. A few studies have analysed the ocelli and the uncommon “pseudoinverted” retinula cells. Moreover, analyses of visual neuropils are still at the stage of Hanström's early comprehensive works. We have therefore used various techniques to analyse the visual fibre pathways and the structure of their interrelated neuropils in several species. We found that pycnogonid ocelli are innervated to first and second visual neuropils in close vicinity to an unpaired midline neuropil, i.e. possibly the arcuate body, in a way very similar to ancestral euarthropods like Euperipatoides rowelli (Onychophora) and Limulus polyphemus (Xiphosura). This supports the ancestrality of pycnogonids and sheds light on what eyes in the pycnogonid ground plan might have ‘looked’ like. Recently it was suggested that arthropod eyes originated from simple ocelli similar to larval eyes. Hence, pycnogonid eyes would be one of the early offshoots among the wealth of more sophisticated arthropod eyes. PMID:22279594
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Lefèvre, Christophe M; Sharp, Julie A; Nicholas, Kevin R
2009-01-01
Using a milk-cell cDNA sequencing approach we characterised milk-protein sequences from two monotreme species, platypus (Ornithorhynchus anatinus) and echidna (Tachyglossus aculeatus) and found a full set of caseins and casein variants. The genomic organisation of the platypus casein locus is compared with other mammalian genomes, including the marsupial opossum and several eutherians. Physical linkage of casein genes has been seen in the casein loci of all mammalian genomes examined and we confirm that this is also observed in platypus. However, we show that a recent duplication of beta-casein occurred in the monotreme lineage, as opposed to more ancient duplications of alpha-casein in the eutherian lineage, while marsupials possess only single copies of alpha- and beta-caseins. Despite this variability, the close proximity of the main alpha- and beta-casein genes in an inverted tail-tail orientation and the relative orientation of the more distant kappa-casein genes are similar in all mammalian genome sequences so far available. Overall, the conservation of the genomic organisation of the caseins indicates the early, pre-monotreme development of the fundamental role of caseins during lactation. In contrast, the lineage-specific gene duplications that have occurred within the casein locus of monotremes and eutherians but not marsupials, which may have lost part of the ancestral casein locus, emphasises the independent selection on milk provision strategies to the young, most likely linked to different developmental strategies. The monotremes therefore provide insight into the ancestral drivers for lactation and how these have adapted in different lineages.
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¿Con o sin ancestros? Vigencia de lo ancestral en la Amazonía peruana
Directory of Open Access Journals (Sweden)
Thomas Mouriès
2014-07-01
Full Text Available The existence —or not— of the concept of ancestors in the indigenous Amazon has been the subject of much debate. However, regional leaders do not hesitate to call upon ‘ancestral’ knowledge, customs, or territories in the sense that, from an academic point of view, could appear enigmatic. «Ancestral, but… with or without ancestors?» is the question a confused anthropologist might ask. In this article, I propose to offer elements of a response to this question,based on a case study in Peru. First I analyze how Amazonian indigenous leaders, following international law, have adopted the legal notion of ‘ancestral possession’ of their territory to adapt it to the political sphere. This approach accounts for the recent generalization and uniformization of the term ‘ancestral’, but poses the problem of how it articulates with the indigenous cosmologies that it supposes to reflect. For this reason, I explore in the second section the pertinence of the category of ‘ancestor’ in the indigenous Amazon, briefly drawing upon the academic debate in order to define inwhat way this category takes on meaning. Based on testimony from an experienced Awajún leader, we thus return in the third section more explicitly to the different meanings and planes of reference that unfold when one uses the term ‘ancestral’, showing how Amazonian indigenous people not only adopt external conceptual elements and arguments, but also transform them based on their own cosmological singularities and political perspectives.
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Du, Xue-Lian; Wang, Shi-Jie; Rong, Li
2011-12-01
By measuring the foliar delta13C values of 5 common shrub species (Rhamnus davurica, Pyracantha fortuneana, Rubus biflorus, Zanthoxylum planispinum, and Viburnum utile) growing in various microhabitats in Wangjiazhai catchment, a typical karst desertification area in Guizhou Province, this paper studied the spatial heterogeneity of plant water use at niche scale and the response of the heterogeneity to different karst rocky desertification degrees. The foliar delta13C values of the shrub species in the microhabitats followed the order of stony surface > stony gully > stony crevice > soil surface, and those of the majority of the species were more negative in the microhabitat soil surface than in the others. The foliar delta13C values decreased in the sequence of V. utile > R. biflorus > Z. planispinum > P. fortuneana > R. davurica, and the mean foliar delta13C value of the shrubs and that of typical species in various microhabitats all increased with increasing karst rocky desertification degree, differed significantly among different microhabitats. It was suggested that with the increasing degree of karst rocky desertification, the structure and functions of karst habitats were impaired, microhabitats differentiated gradually, and drought degree increased.
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Directory of Open Access Journals (Sweden)
Armando Rotondi
2016-11-01
Full Text Available Lo spettacolo teatrale The Rocky Horror Show (1973 di Richard O’Brien e, successivamente, l’adattamento cinematografico The Rocky Horror Picture Show (1975 di Jim Sharman possono essere considerate due pietre miliari del musical. Per temi e struttura, essi rappresentano la massima espressione della rivoluzione sessuale che va a cavalli tra gli anni '60 e '70 ed emblema del movimento di libertà sessuale. Il successo del musical risiede nella presa in giro degli stereotipi del gotico sia letterario che cinematografico, creando una enorme, irriverente parodia. Se il riferimento più evidente è il Frankenstein di Mary Shelley e la versione cinematografica di James Whale, meno analizzato è il rapporto con Benighted (1927 by John B. Priestley e la pellicola The Old Dark House (1932 sempre di Whale e adattata dal romanzo di Priestley. Proprio questa risulta, infatti, vera fonte di ispirazione per il lavoro di O’Brien, piuttosto che il Frankestein. Il contributo analizzerà questo rapporto, focalizzando la sua attenzione sugli elementi della “liturgia del Rocky Horror Show”, sui riferimenti in parodia e proponendo una visione dell’opera di O’Brien come una meta-aprodia.
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2011-02-11
... the central Idaho and Yellowstone area nonessential experimental populations of gray wolves in the...-0000-C3] Nonessential Experimental Populations of Gray Wolves in the Northern Rocky Mountains; Lethal Take of Wolves in the Lolo Elk Management Zone of Idaho; Draft Environmental Assessment AGENCY: Fish...
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Bokn, T.L.; Moy, F.E.; Christie, H.; Engelbert, S.; Karez, R.; Kersting, K.; Kraufvelin, P.; Lindblad, C.; Marba, N.; Pedersen, M.F.; Sorensen, K.
2002-01-01
The response of rocky shore ecosystems to increased nutrient availability was examined in eight land-based mesocosms designed for hard-bottom littoral communities built at Marine Research Station Solbergstrand (Norway). The average seawater volume in each basin was 9 m3 with an average water
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McLeod, Jeffrey D; Brinkman, Gregory L; Milford, Jana B
2014-11-18
Enhanced prospects for natural gas production raise questions about the balance of impacts on air quality, as increased emissions from production activities are considered alongside the reductions expected when natural gas is burned in place of other fossil fuels. This study explores how trends in natural gas production over the coming decades might affect emissions of greenhouse gases (GHG), volatile organic compounds (VOCs) and nitrogen oxides (NOx) for the United States and its Rocky Mountain region. The MARKAL (MARKet ALlocation) energy system optimization model is used with the U.S. Environmental Protection Agency's nine-region database to compare scenarios for natural gas supply and demand, constraints on the electricity generation mix, and GHG emissions fees. Through 2050, total energy system GHG emissions show little response to natural gas supply assumptions, due to offsetting changes across sectors. Policy-driven constraints or emissions fees are needed to achieve net reductions. In most scenarios, wind is a less expensive source of new electricity supplies in the Rocky Mountain region than natural gas. U.S. NOx emissions decline in all the scenarios considered. Increased VOC emissions from natural gas production offset part of the anticipated reductions from the transportation sector, especially in the Rocky Mountain region.
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International Nuclear Information System (INIS)
McGlochlin, S.C.; Harder, R.V.; Jensen, R.T.; Pettis, S.A.; Roggenthen, D.K.
1990-01-01
Several technologies for destroying or decontaminating hazardous wastes were evaluated (during early 1988) as potential processes for treating low-level mixed wastes destined for destruction in the Fluidized Bed Incinerator. The processes that showed promise were retained for further consideration and placed into one (or more) of three categories based on projected availability: short, intermediate, and long-term. Three potential short-term options were identified for managing low-level mixed wastes generated or stored at the Rocky Flats Plant (operated by Rockwell International in 1988). These options are: (1) Continue storing at Rocky Flats, (2) Ship to Nevada Test Site for landfill disposal, or (3) Ship to the Idaho National Engineering Laboratory for incineration in the Waste Experimental Reduction Facility. The third option is preferable because the wastes will be destroyed. Idaho National Engineering Laboratory has received interim status for processing solid and liquid low-level mixed wastes. However, low-level mixed wastes will continue to be stored at Rocky Flats until the Department of Energy approval is received to ship to the Nevada Test Site or Idaho National Engineering Laboratory. Potential intermediate and long-term processes were identified; however, these processes should be combined into complete waste treatment ''systems'' that may serve as alternatives to the Fluidized Bed Incinerator. Waste treatment systems will be the subject of later work. 59 refs., 2 figs
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Effects of climate change on forest vegetation in the northern Rockies
Keane, Robert E.; Mahalovich, Mary Frances; Bollenbacher, Barry L.; Manning, Mary E.; Loehman, Rachel A.; Jain, Terrie B.; Holsinger, Lisa M.; Larson, Andrew J.; Halofsky, Jessica E.; Peterson, David L.
2018-01-01
Increasing air temperature, through its influence on soil moisture, is expected to cause gradual changes in the abundance and distribution of tree, shrub, and grass species throughout the Northern Rockies, with drought tolerant species becoming more competitive. The earliest changes will be at ecotones between lifeforms (e.g., upper and lower treelines). Ecological disturbance, including wildfire and insect outbreaks, will be the primary facilitator of vegetation change, and future forest landscapes may be dominated by younger age classes and smaller trees. High-elevation forests will be especially vulnerable if disturbance frequency
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Rocky Mountain Spotted Fever in a patient treated with anti-TNF-alpha inhibitors.
Mays, Rana M; Gordon, Rachel A; Durham, K Celeste; LaPolla, Whitney J; Tyring, Stephen K
2013-03-15
Rocky Mountain Spotted Fever (RMSF) is a tick-bourne illness, which can be fatal if unrecognized. We discuss the case of a patient treated with an anti-TNF-alpha inhibitor for rheumatoid arthritis who later developed a generalized erythematous macular eruption accompanied by fever. The clinical findings were suggestive of RMSF, which was later confirmed with serology. Prompt treatment with doxyclycine is recommended for all patients with clinical suspicion of RMSF.
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International Nuclear Information System (INIS)
Pascale, E.; Valle, E.; Furano, A.V.
1990-01-01
Each mammalian genus examined so far contains 50,000-100,000 members of an L1 (LINE 1) family of long interspersed repeated DNA elements. Current knowledge on the evolution of L1 families presents a paradox because, although L1 families have been in mammalian genomes since before the mammalian radiation ∼80 million years ago, most members of the L1 families are only a few million years old. Accordingly it has been suggested either that the extensive amplification that characterizes present-day L1 families did not occur in the past or that old members were removed as new one were generated. However, the authors show here that an ancestral rodent L1 family was extensively amplified ∼10 million years ago and that the relics of this amplification have persisted in modern murine genomes. This amplification occurred just before the divergence of modern murine genera from their common ancestor and identifies the murine node in the lineage of modern muroid rodents The results suggest that repeated amplification of L1 elements is a feature of the evaluation of mammalian genomes and that ancestral amplification events could provide a useful tool for determining mammalian lineages
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DEFF Research Database (Denmark)
Henryon, M; Berg, P; Sørensen, A C
2009-01-01
We reasoned that mating animals by minimising the covariance between ancestral contributions (MCAC mating) will generate less inbreeding and at least as much genetic gain as minimum-coancestry mating in breeding schemes where the animals are truncation-selected. We tested this hypothesis by stoch...
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Clow, David W.; Williams, Mark W.; Schuster, Paul F.
2016-01-01
Mountain snowpacks are a vital natural resource for ∼1.5 billion people in the northern Hemisphere, helping to meet human and ecological demand for water in excess of that provided by summer rain. Springtime warming and aeolian dust deposition accelerate snowmelt, increasing the risk of water shortages during late summer, when demand is greatest. While climate networks provide data that can be used to evaluate the effect of warming on snowpack resources, there are no established regional networks for monitoring aeolian dust deposition to snow. In this study, we test the hypothesis that chemistry of snow, wet deposition, and aerosols can be used as a surrogate for dust deposition to snow. We then analyze spatial patterns and temporal trends in inferred springtime dust deposition to snow across the Rocky Mountains, USA, for 1993–2014. Geochemical evidence, including strong correlations (r2 ≥ 0.94) between Ca2+, alkalinity, and dust concentrations in snow deposited during dust events, indicate that carbonate minerals in dust impart a strong chemical signature that can be used to track dust deposition to snow. Spatial patterns in chemistry of snow, wet deposition, and aerosols indicate that dust deposition increases from north to south in the Rocky Mountains, and temporal trends indicate that winter/spring dust deposition increased by 81% in the southern Rockies during 1993–2014. Using a multivariate modeling approach, we determined that increases in dust deposition and decreases in springtime snowfall combined to accelerate snowmelt timing in the southern Rockies by approximately 7–18 days between 1993 and 2014. Previous studies have shown that aeolian dust emissions may have doubled globally during the 20th century, possibly due to drought and land-use change. Climate projections for increased aridity in the southwestern U.S., northern Africa, and other mid-latitude regions of the northern Hemisphere suggest that aeolian dust emissions may continue to
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Bark-beetle infestation affects water quality in the Rocky Mountains of Colorado
Mikkelson, K.; Dickenson, E.; Maxwell, R. M.; McCray, J. E.; Sharp, J. O.
2012-12-01
In the previous decade, millions of acres in the Rocky Mountains of Colorado have been infested by the mountain pine beetle (MPB) leading to large-scale tree mortality. These vegetation changes can impact hydrological and biogeochemical processes, possibly altering the leaching of natural organic matter to surrounding waters and increasing the potential for harmful disinfection byproducts (DBP) during water treatments. To investigate these adverse outcomes, we have collected water quality data sets from local water treatment facilities in the Rocky Mountains of Colorado that have either been infested with MPB or remain a control. Results demonstrate significantly more total organic carbon (TOC) and DBPs in water treatment facilities receiving their source water from infested watersheds as compared to the control sites. Temporal DBP concentrations in MPB-watersheds also have increased significantly in conjunction with the bark-beetle infestation. Interestingly, only modest increases in TOC concentrations were observed in infested watersheds despite more pronounced increases in DBP concentrations. Total trihalomethanes, a heavily regulated DBP, was found to approach the regulatory limit in two out of four reporting quarters at facilities receiving their water from infested forests. These findings indicate that bark-beetle infestation alters TOC composition and loading in impacted watersheds and that this large-scale phenomenon has implications on the municipal water supply in the region.
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Armando Rotondi
2016-01-01
Lo spettacolo teatrale The Rocky Horror Show (1973) di Richard O’Brien e, successivamente, l’adattamento cinematografico The Rocky Horror Picture Show (1975) di Jim Sharman possono essere considerate due pietre miliari del musical. Per temi e struttura, essi rappresentano la massima espressione della rivoluzione sessuale che va a cavalli tra gli anni '60 e '70 ed emblema del movimento di libertà sessuale. Il successo del musical risiede nella presa in giro degli stereotipi del gotico sia lett...
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Roberts, James J.; Kurt D. Fausch,; Hooten, Mevin B.; Peterson, Douglas P.
2017-01-01
Effective conservation of Cutthroat Trout Oncorhynchus clarkii lineages native to the Rocky Mountains will require estimating effects of multiple stressors and directing management toward the most important ones. Recent
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Elemental compositions of two extrasolar rocky planetesimals
Energy Technology Data Exchange (ETDEWEB)
Xu, S.; Jura, M.; Klein, B.; Zuckerman, B. [Department of Physics and Astronomy, University of California, Los Angeles, CA 90095-1562 (United States); Koester, D., E-mail: sxu@astro.ucla.edu, E-mail: jura@astro.ucla.edu, E-mail: kleinb@astro.ucla.edu, E-mail: ben@astro.ucla.edu, E-mail: koester@astrophysik.uni-kiel.de [Institut fur Theoretische Physik und Astrophysik, University of Kiel, D-24098 Kiel (Germany)
2014-03-10
We report Keck/HIRES and Hubble Space Telescope/COS spectroscopic studies of extrasolar rocky planetesimals accreted onto two hydrogen atmosphere white dwarfs, G29-38 and GD 133. In G29-38, eight elements are detected, including C, O, Mg, Si, Ca, Ti, Cr, and Fe while in GD 133, O, Si, Ca, and marginally Mg are seen. These two extrasolar planetesimals show a pattern of refractory enhancement and volatile depletion. For G29-38, the observed composition can be best interpreted as a blend of a chondritic object with some refractory-rich material, a result from post-nebular processing. Water is very depleted in the parent body accreted onto G29-38, based on the derived oxygen abundance. The inferred total mass accretion rate in GD 133 is the lowest of all known dusty white dwarfs, possibly due to non-steady state accretion. We continue to find that a variety of extrasolar planetesimals all resemble to zeroth order the elemental composition of bulk Earth.
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Fiscal year 1990 Rocky Flats Plant environmental restoration program current-year work plan
International Nuclear Information System (INIS)
Nielsen, T.; Waage, E.; Miller, D.
1990-01-01
This paper reports on the FY90 Current Year Work Plan (CYWP), intended to serve as a guiding document with which the Environmental Restoration and RCRA Compliance programs will be implemented at the Rocky Flats Plant, The Current Year Work Plan document serves to provide in one single document any cross-references necessary to understand how the DOE Five Year Plan, Site Specific Plan, or any other related documents fit into the Current Year Work Plan for the Rocky Flats Environmental Restoration. The scope of this paper will compare the planned Fiscal Year 1990 environmental restoration activities to those actually achieved at the end of the fiscal year. The DOE Headquarters (HQ) issued the Environmental Restoration and Waste Management (ER/WM) Five-Year Plan (FYP). The purpose of the FYP is to establish an agenda for compliance and cleanup against which progress will be measured. The Five Year Plan has been updated to include the Colorado Department of Health (CDH), Evironmental Protection Agency (EPA), and Department of Energy (DOE) Inter Agency Agreement Environmental Restoration activities. It addresses hazardous wastes, radioactive wastes, mixed wastes (radioactive and hazardous), and sanitary wastes. It also addresses facilities and sites contaminated with or used in the management of those wastes
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Acute toxicity of zinc to several aquatic species native to the Rocky Mountains.
Brinkman, Stephen F; Johnston, Walter D
2012-02-01
National water-quality criteria for the protection of aquatic life are based on toxicity tests, often using organisms that are easy to culture in the laboratory. Species native to the Rocky Mountains are poorly represented in data sets used to derive national water-quality criteria. To provide additional data on the toxicity of zinc, several laboratory acute-toxicity tests were conducted with a diverse assortment of fish, benthic invertebrates, and an amphibian native to the Rocky Mountains. Tests with fish were conducted using three subspecies of cutthroat trout (Colorado River cutthroat trout Oncorhynchus clarkii pleuriticus, greenback cutthroat trout O. clarkii stomias, and Rio Grande cutthroat trout O. clarkii virginalis), mountain whitefish (Prosopium williamsoni), mottled sculpin (Cottus bairdi), longnose dace (Rhinichthys cataractae), and flathead chub (Platygobio gracilis). Aquatic invertebrate tests were conducted with mayflies (Baetis tricaudatus, Drunella doddsi, Cinygmula sp. and Ephemerella sp.), a stonefly (Chloroperlidae), and a caddis fly (Lepidostoma sp.). The amphibian test was conducted with tadpoles of the boreal toad (Bufo boreas). Median lethal concentrations (LC(50)s) ranged more than three orders of magnitude from 166 μg/L for Rio Grande cutthroat trout to >67,000 μg/L for several benthic invertebrates. Of the organisms tested, vertebrates were the most sensitive, and benthic invertebrates were the most tolerant.
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Directory of Open Access Journals (Sweden)
Maritrini Colón
Full Text Available BACKGROUND: Gene duplication is a key evolutionary mechanism providing material for the generation of genes with new or modified functions. The fate of duplicated gene copies has been amply discussed and several models have been put forward to account for duplicate conservation. The specialization model considers that duplication of a bifunctional ancestral gene could result in the preservation of both copies through subfunctionalization, resulting in the distribution of the two ancestral functions between the gene duplicates. Here we investigate whether the presumed bifunctional character displayed by the single branched chain amino acid aminotransferase present in K. lactis has been distributed in the two paralogous genes present in S. cerevisiae, and whether this conservation has impacted S. cerevisiae metabolism. PRINCIPAL FINDINGS: Our results show that the KlBat1 orthologous BCAT is a bifunctional enzyme, which participates in the biosynthesis and catabolism of branched chain aminoacids (BCAAs. This dual role has been distributed in S. cerevisiae Bat1 and Bat2 paralogous proteins, supporting the specialization model posed to explain the evolution of gene duplications. BAT1 is highly expressed under biosynthetic conditions, while BAT2 expression is highest under catabolic conditions. Bat1 and Bat2 differential relocalization has favored their physiological function, since biosynthetic precursors are generated in the mitochondria (Bat1, while catabolic substrates are accumulated in the cytosol (Bat2. Under respiratory conditions, in the presence of ammonium and BCAAs the bat1Δ bat2Δ double mutant shows impaired growth, indicating that Bat1 and Bat2 could play redundant roles. In K. lactis wild type growth is independent of BCAA degradation, since a Klbat1Δ mutant grows under this condition. CONCLUSIONS: Our study shows that BAT1 and BAT2 differential expression and subcellular relocalization has resulted in the distribution of the
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Inference of Ancestral Recombination Graphs through Topological Data Analysis
Cámara, Pablo G.; Levine, Arnold J.; Rabadán, Raúl
2016-01-01
The recent explosion of genomic data has underscored the need for interpretable and comprehensive analyses that can capture complex phylogenetic relationships within and across species. Recombination, reassortment and horizontal gene transfer constitute examples of pervasive biological phenomena that cannot be captured by tree-like representations. Starting from hundreds of genomes, we are interested in the reconstruction of potential evolutionary histories leading to the observed data. Ancestral recombination graphs represent potential histories that explicitly accommodate recombination and mutation events across orthologous genomes. However, they are computationally costly to reconstruct, usually being infeasible for more than few tens of genomes. Recently, Topological Data Analysis (TDA) methods have been proposed as robust and scalable methods that can capture the genetic scale and frequency of recombination. We build upon previous TDA developments for detecting and quantifying recombination, and present a novel framework that can be applied to hundreds of genomes and can be interpreted in terms of minimal histories of mutation and recombination events, quantifying the scales and identifying the genomic locations of recombinations. We implement this framework in a software package, called TARGet, and apply it to several examples, including small migration between different populations, human recombination, and horizontal evolution in finches inhabiting the Galápagos Islands. PMID:27532298
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Energy Technology Data Exchange (ETDEWEB)
Nelson, Jody K. [Stoller LMS Team, Contractor to the U.S. Department of Energy Office of Legacy Management, 11025 Dover Street, Suite 1000, Westminster, Colorado 80021 (United States)
2013-07-01
Land stewardship is one of nine sustainability programs in the U.S. Department of Energy's Environmental Management System. Land stewardship includes maintaining and improving ecosystem health. At the Rocky Flats Site near Westminster, Colorado, land stewardship is an integral component of the Office of Legacy Management's post-closure monitoring and management at the site. Nearly 263 hectares (650 acres) were disturbed and re-vegetated during site cleanup and closure operations. Proactive management of revegetation areas is critical to the successful reestablishment of native grasslands, wetlands, and riparian communities. The undisturbed native plant communities that occur at the site also require active management to maintain the high-quality wetlands and other habitats that are home to numerous species of birds and other wildlife such as elk and deer, rare plant communities, and the federally listed threatened Preble's meadow jumping mouse. Over the past several decades, an increase of Noxious weeds has impacted much of Colorado's Front Range. As a result, weed control is a key component of the land stewardship program at Rocky Flats. Thirty-three species of state-listed Noxious weeds are known to occur in the Central and Peripheral Operable Units at Rocky Flats, along with another five species that are considered invasive at the site. Early detection and rapid response to control new invasive species is crucial to the program. An integrated weed control/vegetation management approach is key to maintaining healthy, sustainable plant communities that are able to resist Noxious weed invasions. Weed mapping, field surveys, and field-staff training sessions (to learn how to identify new potential problem species) are conducted to help detect and prevent new weed problems. The integrated approach at Rocky Flats includes administrative and cultural techniques (prevention), mechanical controls, biological controls, and chemical controls. Several
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2011-03-29
... nonessential experimental population areas for the gray wolf under section 10(j) of the ESA: the Yellowstone...-0000-C3] Nonessential Experimental Populations of Gray Wolves in the Northern Rocky Mountains; Lethal Take of Wolves in the West Fork Elk Management Unit of Montana; Draft Environmental Assessment AGENCY...
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Association between sepsis and Rocky Mountain spotted fever.
Bacci, Marcelo Rodrigues; Namura, José Jorge
2012-12-06
Rocky Mountain spotted fever (RMSF) is a disease caused by the Gram-negative coccobacillus Rickettsia ricketsii which has been on the rise since the last decade in the USA. The symptoms are common to the many viral diseases, and the classic triad of fever, rash and headache is not always present when RMSF is diagnosed. It may progress to severe cases such as renal failure, disseminated intravascular coagulation and septicaemia. This report aims to present a fulminant case of RMSF associated with sepsis. It describes a female patient's case that quickly progressed to sepsis and death. The patient showed non-specific symptoms for 5 days before being admitted to a hospital. The fact that she lived in an area highly infested with Amblyomma aureolatum ticks was unknown to the medical staff until the moment she died.
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Digital Repository Service at National Institute of Oceanography (India)
Sukumaran, S.; Mulik, J.; Rokade, M.A; Kamble, A
A collision between the ships MSC Chitra and MV Khalijia 3 in the mouth region of Mumbai Harbour led to a leakage of around 800 t of fuel oil in August 2010, affecting the rocky intertidal region of Colaba. To evaluate the impact...
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Gans, K. D.; Blondes, M. S.; Reidy, M. E.; Conaway, C. H.; Thordsen, J. J.; Rowan, E. L.; Kharaka, Y. K.; Engle, M.
2016-12-01
The Rocky Mountain states; Wyoming, Colorado, Montana, New Mexico and Utah produce annually approximately 470,000 acre-feet (3.66 billion barrels) of produced water - water that coexists with oil and gas and is brought to the surface with the pumping of oil and gas wells. Concerns about severe drought, groundwater depletion, and contamination have prompted petroleum operators and water districts to examine the recycling of produced water. Knowledge of the geochemistry of produced waters is valuable in determining the feasibility of produced water reuse. Water with low salinity can be reclaimed for use inside and outside of the petroleum industry. Since a great proportion of petroleum wells in the Rocky Mountain states, especially coal-bed methane wells, have produced water with relatively low salinity (generally oil recovery, and even for municipal uses, such as drinking water. The USGS Produced Waters Geochemical Database, available at http://eerscmap.usgs.gov/pwapp, has 60,000 data points in this region (this includes 35,000 new data points added to the 2002 database) and will facilitate studies on the management of produced water for reclamation in the Rocky Mountain region. Expanding on the USGS 2002 database, which contains geochemical analyses of major ions and total dissolved solids, the new data also include geochemical analyses of minor ions and stable isotopes. We have added an interactive web map application which allows the user to filter data on chosen fields (e.g. TDS data set can provide critical insight for better management of produced waters in water-constrained regions of the Rocky Mountains.
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Energy Technology Data Exchange (ETDEWEB)
Rood, A.S.; Killough, G.G.; Till, J.E.
1999-08-01
Five atmospheric transport models were evaluated for use in Phase II of the Historical Public Exposures Studies at the Rocky Flats Plant. Models included a simple straight-line Gaussian plume model (ISCST2), several integrated puff models (RATCHET, TRIAD, and INPUFF2), and a complex terrain model (TRAC). Evaluations were based on how well model predictions compared with sulfur hexafluoride tracer measurements taken in the vicinity of Rocky Flats in February 1991. Twelve separate tracer experiments were conducted, each lasting 9 hr and measured at 140 samplers in arcs 8 and 16 km from the release point at Rocky Flats. Four modeling objectives were defined based on the endpoints of the overall study: (1) the unpaired maximum hourly average concentration, (2) paired time-averaged concentration, (3) unpaired time-averaged concentration, and (4) arc-integrated concentration. Performance measures were used to evaluate models and focused on the geometric mean and standard deviation of the predicted-to-observed ratio and the correlation coefficient between predicted and observed concentrations. No one model consistently outperformed the others in all modeling objectives and performance measures. The overall performance of the RATCHET model was somewhat better than the other models.
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Cementation and solidification of Rocky Flats Plant incinerator ash
International Nuclear Information System (INIS)
Phillips, J.A.; Semones, G.B.
1994-01-01
Cementation studies on various aqueous waste streams at Rocky Flats have shown this technology to be effective for immobilizing the RCRA constituents in the waste. Cementation is also being evaluated for encapsulation of incinerator ash. Experiments will initially evaluate a surrogate ash waste using a Taguchi experimental design to optimize the cement formulation and waste loading levels for this application. Variables of waste loading, fly ash additions, water/cement ratio, and cement type will be tested at three levels each during the course of this work. Tests will finally be conducted on actual waste using the optimized cement formulation developed from this testing. This progression of tests will evaluate the effectiveness of cement encapsulation for this waste stream without generating any additional wastes