Glycosylation-mediated phenylpropanoid partitioning in Populus tremuloides cell cultures
Babst Benjamin A
2009-12-01
Full Text Available Abstract Background Phenylpropanoid-derived phenolic glycosides (PGs and condensed tannins (CTs comprise large, multi-purpose non-structural carbon sinks in Populus. A negative correlation between PG and CT concentrations has been observed in several studies. However, the molecular mechanism underlying the relationship is not known. Results Populus cell cultures produce CTs but not PGs under normal conditions. Feeding salicyl alcohol resulted in accumulation of salicins, the simplest PG, in the cells, but not higher-order PGs. Salicin accrual reflected the stimulation of a glycosylation response which altered a number of metabolic activities. We utilized this suspension cell feeding system as a model for analyzing the possible role of glycosylation in regulating the metabolic competition between PG formation, CT synthesis and growth. Cells accumulated salicins in a dose-dependent manner following salicyl alcohol feeding. Higher feeding levels led to a decrease in cellular CT concentrations (at 5 or 10 mM, and a negative effect on cell growth (at 10 mM. The competition between salicin and CT formation was reciprocal, and depended on the metabolic status of the cells. We analyzed gene expression changes between controls and cells fed with 5 mM salicyl alcohol for 48 hr, a time point when salicin accumulation was near maximum and CT synthesis was reduced, with no effect on growth. Several stress-responsive genes were up-regulated, suggestive of a general stress response in the fed cells. Salicyl alcohol feeding also induced expression of genes associated with sucrose catabolism, glycolysis and the Krebs cycle. Transcript levels of phenylalanine ammonia lyase and most of the flavonoid pathway genes were reduced, consistent with down-regulated CT synthesis. Conclusions Exogenous salicyl alcohol was readily glycosylated in Populus cell cultures, a process that altered sugar utilization and phenolic partitioning in the cells. Using this system, we
Glycosylation-mediated phenylpropanoid partitioning in
2009-01-01
Abstract Background Phenylpropanoid-derived phenolic glycosides (PGs) and condensed tannins (CTs) comprise large, multi-purpose non-structural carbon sinks in Populus. A negative correlation between PG and CT concentrations has been observed in several studies. However, the molecular mechanism underlying the relationship is not known. Results Populus cell cultures produce CTs but not PGs under normal conditions. Feeding salicyl alcohol resulted in accumulation of salicins, the simplest PG, in...
Babst, Benjamin A; Chen, Han-Yi; Wang, Hong-Qiang; Payyavula, Raja S; Thomas, Tina P; Harding, Scott A; Tsai, Chung-Jui
2014-08-01
The diversity of phenylpropanoids offers a rich inventory of bioactive chemicals that can be exploited for plant improvement and human health. Recent evidence suggests that glycosylation may play a role in the partitioning of phenylpropanoid precursors for a variety of downstream uses. This work reports the functional characterization of a stress-responsive glycosyltransferase, GT1-316 in Populus. GT1-316 belongs to the UGT84A subfamily of plant glycosyltransferase family 1 and is designated UGT84A17. Recombinant protein analysis showed that UGT84A17 is a hydroxycinnamate glycosyltransferase and able to accept a range of unsubstituted and substituted cinnamic and benzoic acids as substrates in vitro. Overexpression of GT1-316 in transgenic Populus led to plant-wide increases of hydroxycinnamoyl-glucose esters, which were further elevated under N-limiting conditions. Levels of the two most abundant flavonoid glycosides, rutin and kaempferol-3-O-rutinoside, decreased, while levels of other less abundant flavonoid and phenylpropanoid conjugates increased in leaves of the GT1-316-overexpressing plants. Transcript levels of representative phenylpropanoid pathway genes were unchanged in transgenic plants, supporting a glycosylation-mediated redirection of phenylpropanoid carbon flow as opposed to enhanced phenylpropanoid pathway flux. The metabolic response of N-replete transgenic plants overlapped with that of N-stressed wild types, as the majority of phenylpropanoid derivatives significantly affected by GT1-316 overexpression were also significantly changed by N stress in the wild types. These results suggest that UGT84A17 plays an important role in phenylpropanoid metabolism by modulating biosynthesis of hydroxycinnamoyl-glucose esters and their derivatives in response to developmental and environmental cues.
2014-01-01
The diversity of phenylpropanoids offers a rich inventory of bioactive chemicals that can be exploited for plant improvement and human health. Recent evidence suggests that glycosylation may play a role in the partitioning of phenylpropanoid precursors for a variety of downstream uses. This work reports the functional characterization of a stress-responsive glycosyltransferase, GT1-316 in Populus. GT1-316 belongs to the UGT84A subfamily of plant glycosyltransferase family 1 and is designated ...
[Phenylpropanoids from Saussureae hieracioides].
Wang, Yu-jie; Tan, Rong; Zhou, Li-shi; Gu, Rui; Zhang, Yi
2015-01-01
To isolate and identify the phenylpropanoids from Saussurea hieracioides. The compounds were isolated by chromatographic and their structures were elucidated on the basis of spectra data. Seven compounds were isolated and identified as umbelliferone (1), scopoletin(2), caffeic acid (3), esculetin (4), skimmin (5), scopolin (6) and chlorogenic acid (7), respectively. Compounds 3, 4 and 7 are isolated from this plant for the first time.
The Phenylpropanoid Pathway in Arabidopsis
Fraser, Christopher M.; Chapple, Clint
2011-01-01
The phenylpropanoid pathway serves as a rich source of metabolites in plants, being required for the biosynthesis of lignin, and serving as a starting point for the production of many other important compounds, such as the flavonoids, coumarins, and lignans. In spite of the fact that the phenylpropanoids and their derivatives are sometimes classified as secondary metabolites, their relevance to plant survival has been made clear via the study of Arabidopsis and other plant species. As a model system, Arabidopsis has helped to elucidate many details of the phenylpropanoid pathway, its enzymes and intermediates, and the interconnectedness of the pathway with plant metabolism as a whole. These advances in our understanding have been made possible in large part by the relative ease with which mutations can be generated, identified, and studied in Arabidopsis. Herein, we provide an overview of the research progress that has been made in recent years, emphasizing both the genes (and gene families) associated with the phenylpropanoid pathway in Arabidopsis, and the end products that have contributed to the identification of many mutants deficient in the phenylpropanoid metabolism: the sinapate esters. PMID:22303276
Phenylpropanoid derivatives from edible canna, Canna edulis.
Yun, Young Sook; Satake, Motoyoshi; Katsuki, Shigeki; Kunugi, Akira
2004-07-01
Two phenylpropanoid sucrose esters were isolated from dry rhizomes of Canna edulis Ker Gawl., along with a known phenylpropanoid sucrose ester and four known phenylpropanoids. On the basis of analysis of spectroscopic data and chemical evidence, these two phenylpropanoid sucrose esters were shown to be 3-O-p-coumaroyl-6-O-feruloyl-beta-D-fructofuranosyl 6-O-acetyl-alpha-D-glucopyranoside and 3,6-di-O-p-coumaroyl-beta-D-fructofuranosyl 6-O-acetyl-alpha-D-glucopyranoside.
Changes in potato phenylpropanoid metabolism during tuber development.
Navarre, Duroy A; Payyavula, Raja S; Shakya, Roshani; Knowles, N Richard; Pillai, Syamkumar S
2013-04-01
Phenylpropanoid metabolite and transcript expression during different developmental stages were examined in field grown potatoes. Carbohydrate and shikimic acid metabolism was assessed to determine how tuber primary metabolism influences phenylpropanoid metabolism. Phenylpropanoid concentrations were highest in immature tubers, as were some transcript levels and enzyme activities including phenylalanine ammonia lyase (PAL). Phenylpropanoid concentration differences between mature and immature tubers varied by genotype, but in some cases were approximately three-fold. The most abundant phenylpropanoid was chlorogenic acid (5CGA), which decreased during tuber maturation. Hydroxycinnamoyl-CoA:quinate hydroxycinnamoyl transferase (HQT) transcripts were highly expressed relative to other phenylpropanoid genes, but were not well correlated with 5CGA concentrations (r = -0.16), whereas HQT enzyme activity was. In contrast to 5CGA, less abundant chlorogenic isomers increased during development. Concentrations of hydroxycinnamic acid amides were higher in immature tubers, as was expression of arginine- and ornithine decarboxylases. Expression of several genes involved in carbohydrate or shikimate metabolism, including sucrose synthase and DAHP, showed similar developmental patterns to phenylpropanoid pools, as did shikimate dehydrogenase enzyme activity. Sucrose, glucose and fructose concentrations were highest in immature tubers. Exogenous treatment of potatoes with sugars stimulated phenylpropanoid biosynthesis, suggesting sugars contribute to the higher phenylpropanoid concentrations in immature tubers. These changes in phenylpropanoid expression suggest the nutritional value of potatoes varies during development.
A new phenylpropanoid glycoside from Cirsium setosum.
Ke, Rui; Zhu, En-Yuan; Chou, Gui-xin
2010-07-01
To study the chemical constituents of Cirsium setosum (Willd.) MB., 70% ethanol extract of the aerial parts was subjected to column chromatography. One new phenylpropanoid glycoside, sinapyl alcohol 9-O-(E)-p-coumaroyl-4-O-beta-D-glucopyanoside (1) was isolated, along with three known compounds: lycoperodine-1 (2), apigenin-7-O-(6"-(E)-p-coumaroyl)-beta-D-galactopyranoside (3) and quercetin (4). The structures were elucidated on the basis of spectral and chemical evidence. Compound 2 was obtained from Cirsium genus for the first time, compounds 3 and 4 were obtained from this plant for the first time.
Two new phenylpropanoids from Micromelum integerrimum.
Wang, Zhi-Yao; He, Wen-Jun; Zhou, Wen-Bing; Zeng, Guang-Zhi; Yin, Zhi-Qi; Zhao, Shou-Xun; Tan, Ning-Hua
2014-08-01
To investigate the chemical and bioactive constituents from the stems and leaves of Micromelum integerrimum. The chemical constituents were isolated and purified by silica gel, Sephadex LH-20, and HPLC. Their structures were mainly elucidated on the basis of extensive 1D- and 2D-NMR spectroscopy and mass spectrometry. Their cytotoxicity and antimicrobial activities were tested by the SRB and turbidimetric methods, respectively. Two new phenylpropanoids and two known coumarins were obtained, and their structures were identified as microintegerrin A (1), microintegerrin B (2), scopoletin (3), and scopolin (4). All of the compounds were tested for their cytotoxicity against three cancer cell lines (HeLa, A549, and BGC-823) and for antimicrobial activity against the fungus Candida albicans and the bacterium Staphylococcus aureus. Two new phenylpropanoids 1 and 2 were isolated and identified from the stems and leaves of M. intgerrimum. None of the compounds showed cytotoxic or antimicrobial activity at the tested concentration of 20 μg·mL(-1). Copyright © 2014 China Pharmaceutical University. Published by Elsevier B.V. All rights reserved.
Fabio Burderi
2007-05-01
Full Text Available Motivated by the study of decipherability conditions for codes weaker than Unique Decipherability (UD, we introduce the notion of coding partition. Such a notion generalizes that of UD code and, for codes that are not UD, allows to recover the ``unique decipherability" at the level of the classes of the partition. By tacking into account the natural order between the partitions, we define the characteristic partition of a code X as the finest coding partition of X. This leads to introduce the canonical decomposition of a code in at most one unambiguouscomponent and other (if any totally ambiguouscomponents. In the case the code is finite, we give an algorithm for computing its canonical partition. This, in particular, allows to decide whether a given partition of a finite code X is a coding partition. This last problem is then approached in the case the code is a rational set. We prove its decidability under the hypothesis that the partition contains a finite number of classes and each class is a rational set. Moreover we conjecture that the canonical partition satisfies such a hypothesis. Finally we consider also some relationships between coding partitions and varieties of codes.
Isolation and pharmacological activity of phenylpropanoid esters from Marrubium vulgare.
Sahpaz, Sevser; Garbacki, Nancy; Tits, Monique; Bailleul, Francois
2002-03-01
The isolation and identification of major phenylpropanoid esters from Marrubium vulgare: (+) (E)-caffeoyl-L-malic acid 1, acteoside 2, forsythoside B 3, arenarioside 4, ballotetroside 5, as well as their anti-inflammatory activity are reported for the first time. We evaluated the inhibitory effects of these five compounds on cyclooxygenase (Cox) catalysed prostaglandin biosynthesis activity. Only the glycosidic phenylpropanoid esters showed an inhibitory activity towards the Cox-2 enzyme and three of them: acteoside 2, forsythoside B 3, arenarioside 4, exhibited higher inhibitory potencies on Cox-2 than on Cox-1. These results are of interest, as Cox-2 is mainly associated with inflammation and the Cox-1 inhibition with adverse side effects often observed with non-steroidal anti-inflammatory drugs. The occurrence of these phenylpropanoid esters could also explain some other pharmacological properties of M. vulgare.
Lignans, phenylpropanoids and polyacetylenes from Chaerophyllum aureum L. (Apiaceae).
Rollinger, Judith M; Zidorn, Christian; Dobner, Michael J; Ellmerer, Ernst P; Stuppner, Hermann
2003-01-01
Sub-aerial parts of Chaerophyllum aureum L. yielded two polyacetylenes, falcarinol (1), falcarindiol (2), three lignans, namely nemerosin (3), deoxypodorhizone (4), deoxypodo-phyllotoxin (5), two phenylpropanoids, 1'-hydroxymyristicin (6) and its angeloyl ester (7). Compounds 6 and 7 were isolated for the first time from plant material and their structures were elucidated by means of extensive 1- and 2-dimensional NMR spectroscopy and high resolution mass spectrometry. In bioautographic tests on TLC plates the dichloromethane extract showed a significant antimicrobial activity. Falcarindiol was identified as the main active principle whereas the phenylpropanoids and lignans showed no activity.
Differential effects of environment on potato phenylpropanoid and carotenoid expression
Payyavula Raja S
2012-03-01
Full Text Available Abstract Background Plant secondary metabolites, including phenylpropanoids and carotenoids, are stress inducible, have important roles in potato physiology and influence the nutritional value of potatoes. The type and magnitude of environmental effects on tuber phytonutrients is unclear, especially under modern agricultural management that minimizes stress. Understanding factors that influence tuber secondary metabolism could facilitate production of more nutritious crops. Metabolite pools of over forty tuber phenylpropanoids and carotenoids, along with the expression of twenty structural genes, were measured in high-phenylpropanoid purple potatoes grown in environmentally diverse locations in North America (Alaska, Texas and Florida. Results Phenylpropanoids, including chlorogenic acid (CGA, were higher in samples from the northern latitudes, as was the expression of phenylpropanoid genes including phenylalanine ammonia lyase (PAL, which had over a ten-fold difference in relative abundance. Phenylpropanoid gene expression appeared coordinately regulated and was well correlated with metabolite pools, except for hydroxycinnamoyl-CoA:quinatehydroxcinnamoyl transferase (HQT; r = -0.24. In silico promoter analysis identified two cis-acting elements in the HQT promoter not found in the other phenylpropanoid genes. Anthocyanins were more abundant in Alaskan samples and correlated with flavonoid genes including DFR (r = 0.91, UFGT (r = 0.94 and F3H (r = 0.77. The most abundant anthocyanin was petunidin-3-coum-rutinoside-5-glu, which ranged from 4.7 mg g-1 in Alaska to 2.3 mg g-1 in Texas. Positive correlations between tuber sucrose and anthocyanins (r = 0.85, suggested a stimulatory effect of sucrose. Smaller variation was observed in total carotenoids, but marked differences occurred in individual carotenoids, which had over a ten-fold range. Violaxanthin, lutein or zeaxanthin were the predominant carotenoids in tubers from Alaska, Texas and Florida
A new Phenylpropanoid Derivative Isolated from Carthamus tinctorius L.
Xiaojia Hu
2016-01-01
Full Text Available A new phenylpropanoid derivative, named carthamusin A (1, along with two known compounds β -daucosterol (2 and stigmasterol (3 were isolated fromCarthamus tinctorius L. The structures were elucidated by extensive 1D and 2D (HMBC, HMQC, 1H- 1H COSY NMR and MS spectroscopy.
A new phenylpropanoid glycoside from Jasminum subtriplinerve Blume.
Huong, Nguyen Thi Hong; Cu, Nguyen Khac Quynh; Quy, Trinh Van; Zidorn, Christian; Ganzera, Markus; Stuppner, Hermann
2008-01-01
From the ethyl acetate extract of the aerial parts of Jasminum subtriplinerve Blume (Oleaceae), 6'-O-menthiafoloylverbascoside (1), rutin (2), isoverbascoside (4), isooleoverbascoside (6), apiosylverbascoside (7), astragalin (9), isoquercitrin (10), and verbascoside (11) were isolated. Their structures were elucidated by extensive MS and NMR spectroscopy. Amongst 6'-O-menthiafoloylverbascoside (1) is a new phenylpropanoid glycoside.
Five new phenylpropanoid glycosides from Paraboea glutinosa (Gesneriaceae).
Wang, Xiaoqin; Li, Li; Bai, Zhenfang; Peng, Yong; Xiao, Peigen; Liu, Yong
2011-04-01
Five new phenylpropanoid glycosides, paraboside A, paraboside B, paraboside I, paraboside II and paraboside III along with the three known phenylethanoids, nuomioside A, caleolarioside B, isonuomioside A have been isolated from the whole plants of Paraboea glutinosa. The structures of the new compounds have been elucidated on the basis of spectroscopic data.
New glycosides of acetophenone derivatives and phenylpropanoids from Juniperus occidentalis.
Inatomi, Yuka; Murata, Hiroko; Inada, Akira; Nakanishi, Tsutomu; Lang, Frank A; Murata, Jin; Iinuma, Munekazu
2013-04-01
New glycosides of seven acetophenone derivatives (1-7) and two phenylpropanoids (8, 9), named juniperosides III-XI, have been isolated from the MeOH extract of the leaves and stems of Juniperus occidentalis Hook. (Cupressaceae), together with eleven other known compounds. The structures of these compounds have been successfully elucidated using a variety of spectroscopic techniques.
Differential effects of environment on potato phenylpropanoid and carotenoid expression
2012-01-01
Abstract Background Plant secondary metabolites, including phenylpropanoids and carotenoids, are stress inducible, have important roles in potato physiology and influence the nutritional value of potatoes. The type and magnitude of environmental effects on tuber phytonutrients is unclear, especially under modern agricultural management that minimizes stress. Understanding factors that influence tuber secondary metabolism could facilitate production of more nutritious crops. Metabolite pools o...
Exploiting phenylpropanoid derivatives to enhance the nutraceutical values of cereals and legumes
Sangam Lal Dwivedi
2016-06-01
Full Text Available Phenylpropanoids are a diverse chemical class with immense health benefits that are biosynthesized from the aromatic amino acid L-phenylalanine. This article reviews the progress for accessing variation in phenylpropanoids in germplasm collections, the genetic and molecular basis of phenylpropanoid biosynthesis, and the development of cultivars dense in seed-phenylpropanoids. Progress is also reviewed on high-throughput assays, factors that influence phenylpropanoids, the site of phenylpropanoids accumulation in seed, Genotype × Environment interactions, and on consumer attitudes for the acceptance of staple foods rich in phenylpropanoids. A paradigm shift was noted in barley, maize, rice, sorghum, soybean, and wheat, wherein cultivars rich in phenylpropanoids are grown in Europe and North and Central America. Studies have highlighted some biological constraints that need to be addressed for development of high-yielding cultivars that are rich in phenylpropanoids. Genomics-assisted breeding is expected to facilitate rapid introgression into improved genetic backgrounds by minimizing linkage drag. More research is needed to systematically characterize germplasm pools for assessing variation to support crop genetic enhancement, and assess consumer attitudes to foods rich in phenylpropanoids.
Phenylpropanoid glycosides from the leaves of Paulownia coreana.
Kim, Jin-Kyu; Si, Chuan-Ling; Bae, Young-Soo
2008-02-15
Study on the water soluble fraction from the leaves of Paulownia coreana led to the isolation of verbascoside (1), isoverbascoside (2), campneoside II (3), and a new phenylpropanoid glycoside, (R,S)-7-hydroxy-7-(3,4-dihydroxyphenyl)-ethyl-O-alpha-L-rhamnopyranosyl(1 --> 3)-beta-d-(6-O-caffeoyl)-glucopyranoside (4). The structures of these compounds were established on the basis of spectroscopic evidence.
Okonkwo, Tochukwu J N; Osadebe, Patience O; Proksch, Peter
2016-01-01
Landolphia owariensis P. Beauv is economically important for latex/rubber and folklore medicine. Its stringy seed pulp is freely eaten by humans and animals. Thus, L. owariensis stringy seed pulp was extracted serially with hexane and acetone to isolate and characterize its active pharmaceutical ingredients. Solvent/solvent partition and chromatographic separations afforded four bioactive compounds, (E)-3-(3,4-Dihydroxylcinnamoyl)quinic acid [(E)-Chlorogenic acid], I; (E)-3-(3,4-Dihydroxylcinnamoyl)quinic acid methyl ester [(E)-Chlorogenic acid methyl ester], II; 3,4-Dihydroxylbenzoic acid, (Protocatechuic acid), III; and 22,23-Dihydrostigmaster-3β-ol (3β-Sitosterol) (IV). Structures of I, II and III were assigned by combinations of high-performance liquid chromatography-ultraviolet-visible spectroscopy, 1D and 2D nuclear magnetic resonance spectroscopy, high-performance liquid chromatography-mass spectrometry and reference to published literatures, while compound IV was identified by chemical methods and gas chromatography-mass spectrometry. The phenylpropanoids and phenolic acid (compounds I, II and III) are notable standard antioxidants with confirmed hepatic-protective activity and other exciting biological activities. Compound IV has been reported to possess anti-inflammatory activity, anti-colon cancer action and a cholesterol-lowering effect. The described compounds are important medicinal constituents of L. owariensis stringy seed pulp, and this is the first major report on the phytochemistry of L. owariensis P. Beauv.
A New Phenylpropanoid Glycoside from Dragon's Blood of Dracaena cambodiana
SHEN Hai-yan; WANG Hui; ZUO Wen-jian; ZHAO You-xing; LUO Ying; MEI Wen-li; DAI Hao-fu
2013-01-01
A new phenylpropanoid glycoside,named cambodianin F(1),together with three known compounds,1-O-β-D-glucopyranosyl-2-hydroxy-4-allylbenzene(2),1-O-(6-O-α-L-rhamnopyranosyl-β-D-glucopyranosyl)-2-hydroxy-4-allylbenzene(3) and 1,2-di-O-β-D-glucopyranosyl-4-allylbenzene(4) was isolated from the dragon's blood of Dracaena cambodiana.The new compound was elucidated by HR-ESI-MS and spectroscopic techniques(UV,IR,1D and 2D NMR).
Phenylpropanoid Glycosides from the Leaves of Ananas comosus.
Chen, Wen-Hao; Huang, Xiao-Juan; Shu, Huo-Ming; Hui, Yang; Guo, Fei-Yan; Song, Xiao-Ping; Ji, Ming-Hui; Chen, Guang-Ying
2015-12-01
Two new phenylpropanoid glycosides, named β-D-(1-O-acetyl-3,6-O-diferuloyl) fructofuranosyl β-D-6'-O-acetylglucopyranoside (1) and β-D-(1-O-acetyl-3,6-O-diferuloyl) fructofuranosyl α-D-glucopyranoside (2), along with two known analogues (3-4) and four glycerides (5-8), were isolated from the EtOAc extract of the leaves of Ananas comosus. Their structures were elucidated on the basis of 1D- and 2D-NMR analyses, as well as HR-ESI-MS experiments. Compounds 1-4 showed significant antibacterial activities against Staphylococcus aureus and Escherichia coli.
Software Partitioning Technologies
2001-05-29
1 Software Partitioning Technologies Tim Skutt Smiths Aerospace 3290 Patterson Ave. SE Grand Rapids, MI 49512-1991 (616) 241-8645 skutt_timothy...Limitation of Abstract UU Number of Pages 12 2 Agenda n Software Partitioning Overview n Smiths Software Partitioning Technology n Software Partitioning...Partition Level OS Core Module Level OS Timers MMU I/O API Layer Partitioning Services 6 Smiths Software Partitioning Technology n Smiths has developed
王潘奋; 郑荣梁; 高建军; 贾忠建; 王文峰; 姚思德; 张加山; 林念芸
1996-01-01
Using pulse radiolysis technique, the reaction between hydroxyl radical and 7 phenylpropanoidglycosides: echinacoside, verbascoside, leucosceptoside A, martynoside, pediculariosides A, M and N which were isolated from Pedicularis were examined. The rate constants of these reactions were determined by transient absorption spectra. All 7 phenylpropanoid glycosides react with hydroxyl radical at high rate constants within (0.97-1.91)×1010L · mol-1 · s-1. suggesting that they are effective hydroxyl radical scavengers. The results demonstrate that the numbers of phenolic hydroxyl groups of phenylpropanoid glycosides are directly related to their scavenging activities. The scavenging activities are likely related to o-dihydroxy group of phenylpropanoid glycosides as well.
Kfoury, Miriana; Lounès-Hadj Sahraoui, Anissa; Bourdon, Natacha; Laruelle, Frédéric; Fontaine, Joël; Auezova, Lizette; Greige-Gerges, Hélène; Fourmentin, Sophie
2016-04-01
Effects of the encapsulation in cyclodextrins (CDs) on the solubility, photostability and antifungal activities of some phenylpropanoids (PPs) were investigated. Solubility experiments were carried out to evaluate the effect of CDs on PPs aqueous solubility. Loading capacities and encapsulation efficiencies of freeze-dried inclusion complexes were determined. Moreover, photostability assays for both inclusion complexes in solution and solid state were performed. Finally, two of the most widespread phytopathogenic fungi, Fusarium oxysporum and Botrytis cinerea, were chosen to examine the antifungal activity of free and encapsulated PPs. Results showed that encapsulation in CDs significantly increased the solubility and photostability of studied PPs (by 2 to 17-fold and 2 to 44-fold, respectively). Free PPs revealed remarkable antifungal properties with isoeugenol showing the lowest half-maximal inhibitory concentration (IC50) values of mycelium growth and spore germination inhibition. Encapsulated PPs, despite their reduced antifungal activity, could be helpful to solve drawbacks such as solubility and stability.
2013-01-01
Much remains unknown about how transcription factors and sugars regulate phenylpropanoid metabolism in tuber crops like potato (Solanum tuberosum). Based on phylogeny and protein similarity to known regulators of phenylpropanoid metabolism, 15 transcription factors were selected and their expression was compared in white, yellow, red, and purple genotypes with contrasting phenolic and anthocyanin profiles. Red and purple genotypes had increased phenylalanine ammonia lyase (PAL) enzyme activit...
Payyavula, Raja S; Singh, Rajesh K; Navarre, Duroy A
2013-11-01
Much remains unknown about how transcription factors and sugars regulate phenylpropanoid metabolism in tuber crops like potato (Solanum tuberosum). Based on phylogeny and protein similarity to known regulators of phenylpropanoid metabolism, 15 transcription factors were selected and their expression was compared in white, yellow, red, and purple genotypes with contrasting phenolic and anthocyanin profiles. Red and purple genotypes had increased phenylalanine ammonia lyase (PAL) enzyme activity, markedly higher levels of phenylpropanoids, and elevated expression of most phenylpropanoid structural genes, including a novel anthocyanin O-methyltransferase. The transcription factors Anthocyanin1 (StAN1), basic Helix Loop Helix1 (StbHLH1), and StWD40 were more strongly expressed in red and purple potatoes. Expression of 12 other transcription factors was not associated with phenylpropanoid content, except for StMYB12B, which showed a negative relationship. Increased expression of AN1, bHLH1, and WD40 was also associated with environmentally mediated increases in tuber phenylpropanoids. Treatment of potato plantlets with sucrose induced hydroxycinnamic acids, flavonols, anthocyanins, structural genes, AN1, bHLH1, WD40, and genes encoding the sucrose-hydrolysing enzymes SUSY1, SUSY4, and INV2. Transient expression of StAN1 in tobacco leaves induced bHLH1, structural genes, SUSY1, SUSY4, and INV1, and increased phenylpropanoid amounts. StAN1 infiltration into tobacco leaves decreased sucrose and glucose concentrations. In silico promoter analysis revealed the presence of MYB and bHLH regulatory elements on sucrolytic gene promoters and sucrose-responsive elements on the AN1 promoter. These findings reveal an interesting dynamic between AN1, sucrose, and sucrose metabolic genes in modulating potato phenylpropanoids.
Bessenrodt, Christine; Olsson, Jørn Børling; Sellers, James A.
2013-01-01
We give a complete classification of the unique path partitions and study congruence properties of the function which enumerates such partitions.......We give a complete classification of the unique path partitions and study congruence properties of the function which enumerates such partitions....
van Summeren-Wesenhagen, Philana V; Marienhagen, Jan
2013-01-01
Phenylpropanoids and phenylpropanoid-derived phenolic compounds such as flavonoids, anthocyanins, or stilbenes are secondary plant metabolites which serve as pigments and scent compounds or provide protection against environmental stress. Due to their antioxidant properties they also have been widely recognized for their benefit on human health. Traditionally, such compounds are extracted from their natural plant sources, but this approach is limited by low abundance and environmental, seasonal as well as regional variations in yield. Chemical synthesis is not a true alternative for the large scale production of more complex phenylpropanoid-derived substances since chemical synthesis becomes commercially unfeasible as the structural complexity of these plant natural products increases. In the last years, many biosynthetic pathways for plant natural products have been elucidated through the advancements in DNA sequencing technologies. In combination with new recombinant DNA technologies this technical progress opens the door toward the functional integration of full biosynthetic pathways for the synthesis of phenylpropanoids and phenylpropanoid-derived compounds in microorganisms. We believe that this approach has great potential to provide sufficient quantities of the desired plant natural product from cheap and renewable resources. This commentary highlights recent advances in the microbial production of phenylpropanoid-derived compounds with an emphasis on flavonoids and stilbenes.
Jian Qiu
Full Text Available The rare wild species of snow lotus Saussurea involucrata is a commonly used medicinal herb with great pharmacological value for human health, resulting from its uniquely high level of phenylpropanoid compound production. To gain information on the phenylpropanid biosynthetic pathway genes in this critically important medicinal plant, global transcriptome sequencing was performed. It revealed that the phenylpropanoid pathway genes were well represented in S. involucrata. In addition, we introduced two key phenylpropanoid pathway inducing transcription factors (PAP1 and Lc into this medicinal plant. Transgenic S. involucrata co-expressing PAP1 and Lc exhibited purple pigments due to a massive accumulation of anthocyanins. The over-expression of PAP1 and Lc largely activated most of the phenylpropanoid pathway genes, and increased accumulation of several phenylpropanoid compounds significantly, including chlorogenic acid, syringin, cyanrine and rutin. Both ABTS (2,2'-azinobis-3-ethylbenzotiazo-line-6-sulfonic acid and FRAP (ferric reducing anti-oxidant power assays revealed that the antioxidant capacity of transgenic S. involucrata lines was greatly enhanced over controls. In addition to providing a deeper understanding of the molecular basis of phenylpropanoid metabolism, our results potentially enable an alternation of bioactive compound production in S. involucrata through metabolic engineering.
Bioactive phenylpropanoid analogues from Piper betle L. var. haldia leaves.
Atiya, Akhtar; Sinha, Barij Nayan; Lal, Uma Ranjan
2017-02-15
Phytochemical analyses of the chloroform extract of Piper betle L. var. birkoli, Piperaceae, leaves led to the isolation of two new phenylpropanoid analogues: bis-chavicol dodecanoyl ester (2) and bis-hydroxychavicol dodecanoyl ester (3), along with one known compound: allyl-3-methoxy-4-hydroxybenzene (1) on the basis of spectroscopic data 1D ((1)H and (13)C) and 2D ((1)H-(1)H COSY and HMBC) NMR, as well as ESI-MS, FT-IR, HR-ESI-MS and LC-ESI-MS. Compound 2 and 3 exhibited excellent antioxidant DPPH radical scavenging activity with IC50 values of 12.67 μg/mL and 1.08 μg/mL compared to ascorbic acid as a standard antioxidant drug with IC50 value of 6.60 μg/mL. Evaluation of cytotoxic activity against two human oral cancer cell lines (AW13516 and AW8507) showed significant effect with GI50 values of 19.61 and 23.01 μg/mL for compound 2 and 10.25 and 13.12 μg/mL for compound 3, compared to Doxorubicin(®) as a standard cytotoxic drug with GI50 value of < 10 μg/mL.
Phytotoxic phenylpropanoids isolated from Ophryosporus charua (Griseb.) Hieron.
Bravetti, Margarita M Del M; Vico, Raquel V; Carpinella, Maria C; Ferrayoli, Carlos C; Palacios, Sara M
2017-03-06
Bioguided isolation of the EtOH extract from the medicinal native plant, Ophryosporus charua, against Raphanus sativus, yielded three phenylpropanoids, charuol A [(Z)-4-((1S,2R)-3-acetoxy-1,2-dihydroxypropyl)phenyl) 2-methylbut-2-enoate], charuepoxide [(Z)-4-((2S,3R)-3-(acetoxymethyl oxiran-2-yl)phenyl) 2-methylbut-2-enoate] and charuol B [(Z)-4-((1R,2R)-3-acetoxy-1,2-dihydroxypropyl)phenyl) 2-methylbut-2-enoate]. Their structures and absolute configuration were established by extensive spectroscopic analyses. The effective concentrations for 50% inhibition of germination (ECg50) and root (ECr50) and shoot (ECs50) elongations were determined for these compounds against P. miliaceum (monocot) and Raphanus sativus (dicot). Charuol A was the most active in the inhibition of germination of P. miliaceum (ECg50 = 0.97 mM), followed by charuol B and charuepoxide, although charuol B was the most effective in regulating the root growth of P. miliaceum seedlings, with an ECr50 of 1.0 mM. Charuol A inhibited the germination of R. sativus, while its seedling development was also affected by all three compounds with different effectiveness. Charuol A was also highly effective in the 0.09-0.30 mM range against other test species such as Lactuca sativa, Eruca sativa, Allium ampeloprasum and Secale cereale.
Ballester, A.R.; Lafuente, M.T.; Vos, de R.C.H.; Bovy, A.G.; González-Candelas, L.
2013-01-01
Penicillium spp. are among the major postharvest pathogens of citrus fruit. Induction of natural resistance in fruits constitutes one of the alternatives to chemical fungicides. Here, we investigated the involvement of the phenylpropanoid pathway in the induction of resistance in Navelate oranges by
Characterization of phenylpropanoid pathway genes within European maize (Zea mays L.) inbreds
Andersen, Jeppe Reitan; Zein, Imad; Wenzel, Gerhard
2008-01-01
genomic fragments of six putative phenylpropanoid pathway genes in a panel of elite European inbred lines of maize (Zea mays L.) contrasting in forage quality traits. Six loci, encoding C4H, 4CL1, 4CL2, C3H, F5H, and CAD, displayed different levels of nucleotide diversity and linkage disequilibrium (LD...
Yuan LI; Dong Ming ZHANG; Shi Shan YU; Jian Bei LI; Yong Ming LUO
2006-01-01
A novel phenylpropanoid-substituted catechin glycoside glabraoside A 1 and a new dihydrochalcone 3'-(7″-allylphenyl)-2′,4′,4″-trihydroxy-6′-methoxydihydrochalcone 2 were isolated from the herbs of Sarcandra glabra. Their structures were elucidated on the basis of spectroscopic analyses and chiroptical methods.
Characterization of phenylpropanoid pathway genes within European maize (Zea mays L.) inbreds
Andersen, Jeppe Reitan; Zein, Imad; Wenzel, Gerhard;
2008-01-01
genomic fragments of six putative phenylpropanoid pathway genes in a panel of elite European inbred lines of maize (Zea mays L.) contrasting in forage quality traits. Six loci, encoding C4H, 4CL1, 4CL2, C3H, F5H, and CAD, displayed different levels of nucleotide diversity and linkage disequilibrium (LD...
Chlorogenic acid (CGA) is the major phenolic sink in potato tubers and can constitute over 90% of total phenylpropanoids. The regulation of CGA biosynthesis in potato and the role of the CGA biosynthetic gene hydroxycinnamoyl-CoA:quinate hydroxycinnamoyl transferase (HQT) was characterized. A sucros...
Partitive descriptions in Korean
Keun Young Shin
2017-02-01
Full Text Available This paper examines Korean partitive constructions to investigate the typology of the partitive structure. In Korean, a quantifier precedes the nominal in a non-partitive, but it follows the nominal in a partitive. The relative order between a quantifier and its associated nominal indicates that a quantifier in Korean partitive does not function as a NP adjunct but takes a DP as its argument. I argue that Korean postnominal (floating quantifier constructions can be interpreted as partitives or pseudo-partitives/quantitatives because a postnominal (floating quantifier denoting a part-of relation can occur with a kind-denoting DP as well as a definite DP. I also propose that a quantifier denoting a part-of relation is associated with the argument of a verb via composition with a verbal predicate in the floating quantifier construction. This approach can provide an account for several idiosyncratic properties of floating quantifier constructions, which are difficult to capture under the assumption that a floating quantifier construction is derived by moving a quantifier away from its associated nominal. This article is part of the Special Collection: Partitives
Combinatorics of set partitions
Mansour, Toufik
2012-01-01
Focusing on a very active area of mathematical research in the last decade, Combinatorics of Set Partitions presents methods used in the combinatorics of pattern avoidance and pattern enumeration in set partitions. Designed for students and researchers in discrete mathematics, the book is a one-stop reference on the results and research activities of set partitions from 1500 A.D. to today. Each chapter gives historical perspectives and contrasts different approaches, including generating functions, kernel method, block decomposition method, generating tree, and Wilf equivalences. Methods and d
Fuzzy Partition Models for Fitting a Set of Partitions.
Gordon, A. D.; Vichi, M.
2001-01-01
Describes methods for fitting a fuzzy consensus partition to a set of partitions of the same set of objects. Describes and illustrates three models defining median partitions and compares these methods to an alternative approach to obtaining a consensus fuzzy partition. Discusses interesting differences in the results. (SLD)
Kellerstein, M; Verbaarschot, J J M
2016-01-01
The behavior of quenched Dirac spectra of two-dimensional lattice QCD is consistent with spontaneous chiral symmetry breaking which is forbidden according to the Coleman-Mermin-Wagner theorem. One possible resolution of this paradox is that, because of the bosonic determinant in the partially quenched partition function, the conditions of this theorem are violated allowing for spontaneous symmetry breaking in two dimensions or less. This goes back to work by Niedermaier and Seiler on nonamenable symmetries of the hyperbolic spin chain and earlier work by two of the auhtors on bosonic partition functions at nonzero chemical potential. In this talk we discuss chiral symmetry breaking for the bosonic partition function of QCD at nonzero isospin chemical potential and a bosonic random matrix theory at imaginary chemical potential and compare the results with the fermionic counterpart. In both cases the chiral symmetry group of the bosonic partition function is noncompact.
Carbon partitioning in photosynthesis.
Melis, Anastasios
2013-06-01
The work seeks to raise awareness of a fundamental problem that impacts the renewable generation of fuels and chemicals via (photo)synthetic biology. At issue is regulation of the endogenous cellular carbon partitioning between different biosynthetic pathways, over which the living cell exerts stringent control. The regulation of carbon partitioning in photosynthesis is not understood. In plants, microalgae and cyanobacteria, methods need be devised to alter photosynthetic carbon partitioning between the sugar, terpenoid, and fatty acid biosynthetic pathways, to lower the prevalence of sugar biosynthesis and correspondingly upregulate terpenoid and fatty acid hydrocarbons production in the cell. Insight from unusual but naturally occurring carbon-partitioning processes can help in the design of blueprints for improved photosynthetic fuels and chemicals production.
Water-soluble phenylpropanoid constituents from aerial roots of Ficus microcarpa.
Ouyang, Ming-An; Chen, Pei-Qing; Wang, Si-Bing
2007-07-20
New water-soluble phenylpropanoid constituents, ficuscarpanoside A, guaiacylglycerol 9-O-beta-D-glucopyranoside, and erythro-guaiacylglycerol 9-O-beta-D-glucopyranoside, along with known guaiacylglycerol, erythro-guaiacylglycerol, 4-methoxy guaiacylglycerol 7-O-beta-D-glucopyranoside, and 3-(4-hydroxy-3-methoxy phenyl) propan-1,2-diol, have been isolated from the aerial roots of Ficus microcarpa. Their structures were elucidated on the basis of 1D and 2D NMR experiments.
Two new phenylpropanoid glycosides with interesterification from Scrophularia dentata Royle ex Benth
Zhang, Liuqiang; Yang, Zhuo; Jia, Qi; Dorje, Gaawe; Zhao, Zhili; Guo, Fujiang; Li, Yiming
2013-10-01
Two new phenylpropanoid glycosides (1-2), along with seven known ones (3-9), were isolated from the whole plant of Scrophularia dentata Royle ex Benth. Their structures were elucidated by spectroscopic methods. Among them, compounds 1 and 2 failed to separated, because they can easily transform into each other by acyl migrant reaction. In this paper, the interesterification mechanism was discussed firstly and the rule can be used in the similar structure elucidation in future.
Characterization of phenylpropanoid pathway genes within European maize (Zea mays L.) inbreds.
Andersen, Jeppe Reitan; Zein, Imad; Wenzel, Gerhard; Darnhofer, Birte; Eder, Joachim; Ouzunova, Milena; Lübberstedt, Thomas
2008-01-03
Forage quality of maize is influenced by both the content and structure of lignins in the cell wall. Biosynthesis of monolignols, constituting the complex structure of lignins, is catalyzed by enzymes in the phenylpropanoid pathway. In the present study we have amplified partial genomic fragments of six putative phenylpropanoid pathway genes in a panel of elite European inbred lines of maize (Zea mays L.) contrasting in forage quality traits. Six loci, encoding C4H, 4CL1, 4CL2, C3H, F5H, and CAD, displayed different levels of nucleotide diversity and linkage disequilibrium (LD) possibly reflecting different levels of selection. Associations with forage quality traits were identified for several individual polymorphisms within the 4CL1, C3H, and F5H genomic fragments when controlling for both overall population structure and relative kinship. A 1-bp indel in 4CL1 was associated with in vitro digestibility of organic matter (IVDOM), a non-synonymous SNP in C3H was associated with IVDOM, and an intron SNP in F5H was associated with neutral detergent fiber. However, the C3H and F5H associations did not remain significant when controlling for multiple testing. While the number of lines included in this study limit the power of the association analysis, our results imply that genetic variation for forage quality traits can be mined in phenylpropanoid pathway genes of elite breeding lines of maize.
Tavares, Sílvia; Vesentini, Damiano; Fernandes, João Carlos; Ferreira, Ricardo B; Laureano, Olga; Ricardo-Da-Silva, Jorge M; Amâncio, Sara
2013-05-01
Grapevine (Vitis vinifera L.) is rich in phenylpropanoid compounds, namely flavonoids and stilbenes which, present in most tissues, are described as antioxidants and known to accumulate in response to biotic and abiotic stress. Grapevine is then a choice model for studying the interplay between the phenylpropanoid pathway and nutrient deficiency. Here we report the response to sulfur deficiency (-S) of flavonoids and stilbenes biosynthetic pathways in chlorophyll tissues (plantlets) and cell culture. Anthocyanins and trans-resveratrol accumulated in plantlets and trans-resveratrol glucoside in cell cultures in response to sulfur deficiency, while a significant decrease in chlorophyll was observed in -S plantlets. The up-regulation of chalcone synthase gene and the downstream flavonoid biosynthesis genes dihydroflavonol reductase and anthocyanidin synthase matched the accumulation of anthocyanins in -S V. vinifera plantlets. The mRNA level of stilbene synthase gene(s) was correlated tightly with the increase in trans-resveratrol and trans-resveratrol glucoside levels, respectively in -S plantlets and cell cultures. As a whole, the present study unveil that V. vinifera under sulfur deficiency allocates resources to the phenylpropanoid pathway, probably consecutive to inhibition of protein synthesis, which can be advantageous to resist against oxidative stress symptoms evoked by -S conditions.
Aye Aye Thwe
Full Text Available Buckwheat, Fagopyrum tataricum Gaertn., is an important medicinal plant, which contains several phenolic compounds, including one of the highest content of rutin, a phenolic compound with anti-inflammatory properties. An experiment was conducted to investigate the level of expression of various genes in the phenylpropanoid biosynthetic pathway to analyze in vitro production of anthocyanin and phenolic compounds from hairy root cultures derived from 2 cultivars of tartary buckwheat (Hokkai T8 and T10. A total of 47 metabolites were identified by gas chromatography-time-of-flight mass spectrometry (GC-TOFMS and subjected to principal component analysis (PCA in order to fully distinguish between Hokkai T8 and T10 hairy roots. The expression levels of phenylpropanoid biosynthetic pathway genes, through qRT-PCR, showed higher expression for almost all the genes in T10 than T8 hairy root except for FtF3'H-2 and FtFLS-2. Rutin, quercetin, gallic acid, caffeic acid, ferulic acid, 4-hydroxybenzoic acid, and 2 anthocyanin compounds were identified in Hokkai T8 and T10 hairy roots. The concentration of rutin and anthocyanin in Hokkai T10 hairy roots of tartary buckwheat was several-fold higher compared with that obtained from Hokkai T8 hairy root. This study provides useful information on the molecular and physiological dynamic processes that are correlated with phenylpropanoid biosynthetic gene expression and phenolic compound content in F. tataricum species.
Payyavula, Raja S; Shakya, Roshani; Sengoda, Venkatesan G; Munyaneza, Joseph E; Swamy, Prashant; Navarre, Duroy A
2015-05-01
Chlorogenic acid (CGA) is the major phenolic sink in potato tubers and can constitute over 90% of total phenylpropanoids. The regulation of CGA biosynthesis in potato and the role of the CGA biosynthetic gene hydroxycinnamoyl CoA:quinate hydroxycinnamoyl transferase (HQT) was characterized. A sucrose induced accumulation of CGA correlated with the increased expression of phenylalanine ammonia-lyase (PAL) rather than HQT. Transient expression of the potato MYB transcription factor StAN1 (anthocyanin 1) in tobacco increased CGA. RNAi suppression of HQT resulted in over a 90% reduction in CGA and resulted in early flowering. The reduction in total phenolics and antioxidant capacity was less than the reduction in CGA, suggesting flux was rerouted into other phenylpropanoids. Network analysis showed distinct patterns in different organs, with anthocyanins and phenolic acids showing negative correlations in leaves and flowers and positive in tubers. Some flavonols increased in flowers, but not in leaves or tubers. Anthocyanins increased in flowers and showed a trend to increase in leaves, but not tubers. HQT suppression increased biosynthesis of caffeoyl polyamines, some of which are not previously reported in potato. Decreased PAL expression and enzyme activity was observed in HQT suppressed lines, suggesting the existence of a regulatory loop between CGA and PAL. Electrophysiology detected no effect of CGA suppression on potato psyllid feeding. Collectively, this research showed that CGA in potatoes is synthesized through HQT and HQT suppression altered phenotype and redirected phenylpropanoid flux.
Fritz, Christina; Palacios-Rojas, Natalia; Feil, Regina; Stitt, Mark
2006-05-01
Interactions between nitrogen and carbon metabolism modulate many aspects of the metabolism, physiology and development of plants. This paper investigates the contribution of nitrate and nitrogen metabolism to the regulation of phenylpropanoid and nicotine synthesis. Wild-type tobacco was grown on 12 or 0.2 mm nitrate and compared with a nitrate reductase-deficient mutant [Nia30(145)] growing on 12 mm nitrate. Nitrate-deficient wild-type plants accumulate high levels of a range of phenylpropanoids including chlorogenic acid, contain high levels of rutin, are highly lignified, but contain less nicotine than nitrogen-replete wild-type tobacco. Nia30(145) resembles nitrate-deficient wild-type plants with respect to the levels of amino acids, but accumulates large amounts of nitrate. The levels of phenylpropanoids, rutin and lignin resemble those in nitrogen-replete wild-type plants, whereas the level of nicotine resembles that in nitrate-deficient wild-type plants. Expression arrays and real time RT-PCR revealed that a set of genes required for phenylpropanoid metabolism including PAL, 4CL and HQT are induced in nitrogen-deficient wild-type plants but not in Nia30(145). It is concluded that nitrogen deficiency leads to a marked shift from the nitrogen-containing alkaloid nicotine to carbon-rich phenylpropanoids. The stimulation of phenylpropanoid metabolism is triggered by changes of nitrate, rather than downstream nitrogen metabolites, and is mediated by induction of a set of enzymes in the early steps of the phenylpropanoid biosynthetic pathway.
Partition Function of Spacetime
Makela, Jarmo
2008-01-01
We consider a microscopic model of spacetime, where spacetime is assumed to be a specific graph with Planck size quantum black holes on its vertices. As a thermodynamical system under consideration we take a certain uniformly accelerating, spacelike two-surface of spacetime which we call, for the sake of brevity and simplicity, as {\\it acceleration surface}. Using our model we manage to obtain an explicit and surprisingly simple expression for the partition function of an acceleration surface. Our partition function implies, among other things, the Unruh and the Hawking effects. It turns out that the Unruh and the Hawking effects are consequences of a specific phase transition, which takes place in spacetime, when the temperature of spacetime equals, from the point of view of an observer at rest with respect to an acceleration surface, to the Unruh temperature measured by that observer. When constructing the partition function of an acceleration surface we are forced to introduce a quantity which plays the ro...
Partition density functional theory
Nafziger, Jonathan
Partition density functional theory (PDFT) is a method for dividing a molecular electronic structure calculation into fragment calculations. The molecular density and energy corresponding to Kohn Sham density-functional theory (KS-DFT) may be exactly recovered from these fragments. Each fragment acts as an isolated system except for the influence of a global one-body 'partition' potential which deforms the fragment densities. In this work, the developments of PDFT are put into the context of other fragment-based density functional methods. We developed three numerical implementations of PDFT: One within the NWChem computational chemistry package using basis sets, and the other two developed from scratch using real-space grids. It is shown that all three of these programs can exactly reproduce a KS-DFT calculation via fragment calculations. The first of our in-house codes handles non-interacting electrons in arbitrary one-dimensional potentials with any number of fragments. This code is used to explore how the exact partition potential changes for different partitionings of the same system and also to study features which determine which systems yield non-integer PDFT occupations and which systems are locked into integer PDFT occupations. The second in-house code, CADMium, performs real-space calculations of diatomic molecules. Features of the exact partition potential are studied for a variety of cases and an analytical formula determining singularities in the partition potential is derived. We introduce an approximation for the non-additive kinetic energy and show how this quantity can be computed exactly. Finally a PDFT functional is developed to address the issues of static correlation and delocalization errors in approximations within DFT. The functional is applied to the dissociation of H2 + and H2.
Matrix string partition function
Kostov, Ivan K; Kostov, Ivan K.; Vanhove, Pierre
1998-01-01
We evaluate quasiclassically the Ramond partition function of Euclidean D=10 U(N) super Yang-Mills theory reduced to a two-dimensional torus. The result can be interpreted in terms of free strings wrapping the space-time torus, as expected from the point of view of Matrix string theory. We demonstrate that, when extrapolated to the ultraviolet limit (small area of the torus), the quasiclassical expressions reproduce exactly the recently obtained expression for the partition of the completely reduced SYM theory, including the overall numerical factor. This is an evidence that our quasiclassical calculation might be exact.
Distributed Evolutionary Graph Partitioning
Sanders, Peter
2011-01-01
We present a novel distributed evolutionary algorithm, KaFFPaE, to solve the Graph Partitioning Problem, which makes use of KaFFPa (Karlsruhe Fast Flow Partitioner). The use of our multilevel graph partitioner KaFFPa provides new effective crossover and mutation operators. By combining these with a scalable communication protocol we obtain a system that is able to improve the best known partitioning results for many inputs in a very short amount of time. For example, in Walshaw's well known benchmark tables we are able to improve or recompute 76% of entries for the tables with 1%, 3% and 5% imbalance.
Ververidis, Filippos; Trantas, Emmanouil; Douglas, Carl; Vollmer, Guenter; Kretzschmar, Georg; Panopoulos, Nickolas
2007-10-01
Plant natural products derived from phenylalanine and the phenylpropanoid pathways are impressive in their chemical diversity and are the result of plant evolution, which has selected for the acquisition of large repertoires of pigments, structural and defensive compounds, all derived from a phenylpropanoid backbone via the plant-specific phenylpropanoid pathway. These compounds are important in plant growth, development and responses to environmental stresses and thus can have large impacts on agricultural productivity. While plant-based medicines containing phenylpropanoid-derived active components have long been used by humans, the benefits of specific flavonoids and other phenylpropanoid-derived compounds to human health and their potential for long-term health benefits have only been recognized more recently. In this part of the review, we discuss in detail the recent strategies and achievements used in the reconstruction of multienzyme pathways in plants and microbes in an effort to be able to attain higher amounts of the desired flavonoids and stilbenoids exploiting their beneficial properties as analyzed extensively in Part I of this review.
New Aperture Partitioning Element
Griffin, S.; Calef, B.; Williams, S.
Postprocessing in an optical system can be aided by adding an optical element to partition the pupil into a number of segments. When imaging through the atmosphere, the recorded data are blurred by temperature-induced variations in the index of refraction along the line of sight. Using speckle imaging techniques developed in the astronomy community, this blurring can be corrected to some degree. The effectiveness of these techniques is diminished by redundant baselines in the pupil. Partitioning the pupil reduces the degree of baseline redundancy, and therefore improves the quality of images that can be obtained from the system. It is possible to implement the described approach on an optical system with a segmented primary mirror, but not very practical. This is because most optical systems do not have segmented primary mirrors, and those that do have relatively low bandwidth positioning of segments due to their large mass and inertia. It is much more practical to position an active aperture partitioning element at an aft optics pupil of the optical system. This paper describes the design, implementation and testing of a new aperture partitioning element that is completely reflective and reconfigurable. The device uses four independent, annular segments that can be positioned with a high degree of accuracy without impacting optical wavefront of each segment. This mirror has been produced and is currently deployed and working on the 3.6 m telescope.
Partitions with Initial Repetitions
George E. ANDREWS
2009-01-01
A variety of interesting connections with modular forms, mock theta functions and Rogers-Ramanujan type identities arise in consideration of partitions in which the smaller integers are repeated as summands more often than the larger summands. In particular, this concept leads to new interpre-tations of the Rogers-Selberg identities and Bailey's modulus 9 identities.
Rubal, Juan J; Moreno-Dorado, F Javier; Guerra, Francisco M
2010-01-01
A phenylpropanoid 1, a slovenolide 2, and two germacranes bearing a methylthiopropenoate moiety, 3 and 4, along with twenty known metabolites have been isolated from the roots of THAPSIA VILLOSA var. VILLOSA L. The structures of two known phenylpropanoids 5 and 6 have been corrected. Compounds 7 ...
Two new phenylpropanoid glycosides from the aerial parts of Lespedeza cuneata
Chuangfeng Zhang
2016-10-01
Full Text Available Two new phenylpropanoid glycosides named cuneataside E (1 and cuneataside F (2, were isolated from the aerial parts of Lespedeza cuneata (Dum. Cours. G. Don, whose structures were E and Z isomer, respectively. Their structures were elucidated on the basis of comprehensive spectroscopic analysis (UV, IR, HR-ESI-MS, 1D and 2D NMR. In in vitro bioassays at 10 μmol/L, compound 1 showed moderate hepatoprotective activity against N-acetyl-p-aminophenol (APAP-induced toxicity in HeG2 cells.
On partitions avoiding right crossings
Yan, Sherry H F
2011-01-01
Recently, Chen et al. derived the generating function for partitions avoiding right nestings and posed the problem of finding the generating function for partitions avoiding right crossings. In this paper, we derive the generating function for partitions avoiding right crossings via an intermediate structure of partial matchings avoiding 2-right crossings and right nestings. We show that there is a bijection between partial matchings avoiding 2-right crossing and right nestings and partitions avoiding right crossings.
Mattson, W.J. [Forestry Sciences Lab., Rhinelander, WI (United States); Julkunen-Tiitto, R. [Univ. of Joensuu, Biology Dept., Joensuu (Finland); Herms, D.A. [Ohio State Univ., Dept. of Entmology, Wooster, OH (United States)
2005-11-01
Rising levels of atmospheric CO{sub 2} can alter plant growth and partitioning to secondary metabolites. The protein competition model (PCM) and the extended growth/differentiation balance model (GDB{sub e}) are similar but alternative models that address ontogenetic and environmental effects on whole-plant carbon partitioning to the phenylpropanoid biosynthetic pathway, making many divergentpredictins. To test the validity of the models, we compare plant responses to one key prediction: if CO{sub 2} enrichment simultaneously stimulates both photosynthesis and growth, then PCM predicts that partitioning to phenolic compounds will decline, whereas GDB{sub e} generally predicts the opposite. Elevated CO{sub 2} (at 548 ppm) increased the biomass growth (ca 23%) as well as the net photosynthesis (ca 13%) of 1-year-old potted paper birch, Betula papyrifera Marsch., in a free air carbon dioxide enrichment study (FACE) in northern Wisconsin. Concomitantly, elevated CO{sub 2} increased carbon partitioning to all measured classes of phenolics (Folin-Denis phenolics, HPLC low molecular weight phenolics (i.e. cinnamic acid derivatives, flavonol flycosides, and flavon-3-ols), condensed tannins, and acid-detergent lignin) in leaves. In stem tissues, tannins and lignin increased, but F-D phenolics did not. In root tissues, F-D phenolics, and tannins increased, but lignin did not. The data suggest that CO{sub 2} enrichment stimulated pathway-wide increase in carbon partitioning to phenylpropanoids. High CO{sub 2} plants had 11.8% more F-D phenolics, 19.3% more tannin, and 10% more lignin than ambient plants after adjusting for plant mass via analysis of covariance. In general, the results unequivocally support the predictions of the GDB{sub e} model. By way of contrast, results from many parallel studies on FACE trembling aspen, Populus tremuloides Michx., suggest that although 2 enrichment has consistently stimulated both photosynthesis and growth, it apparently did not
Partitional clustering algorithms
2015-01-01
This book summarizes the state-of-the-art in partitional clustering. Clustering, the unsupervised classification of patterns into groups, is one of the most important tasks in exploratory data analysis. Primary goals of clustering include gaining insight into, classifying, and compressing data. Clustering has a long and rich history that spans a variety of scientific disciplines including anthropology, biology, medicine, psychology, statistics, mathematics, engineering, and computer science. As a result, numerous clustering algorithms have been proposed since the early 1950s. Among these algorithms, partitional (nonhierarchical) ones have found many applications, especially in engineering and computer science. This book provides coverage of consensus clustering, constrained clustering, large scale and/or high dimensional clustering, cluster validity, cluster visualization, and applications of clustering. Examines clustering as it applies to large and/or high-dimensional data sets commonly encountered in reali...
The Fibonacci partition triangles
Fahr, Philipp
2011-01-01
In two previous papers we have presented partition formulae for the Fibonacci numbers motivated by the appearance of the Fibonacci numbers in the representation theory of the 3-Kronecker quiver and its universal cover, the 3-regular tree. Here we show that the basic information can be rearranged in two triangles. They are quite similar to the Pascal triangle of the binomial coefficients, but in contrast to the additivity rule for the Pascal triangle, we now deal with additivity along hooks, or, equivalently, with additive functions for valued translation quivers. As for the Pascal triangle, we see that the numbers in these Fibonacci partition triangles are given by evaluating polynomials. We show that the two triangles can be obtained from each other by looking at differences of numbers, it is sufficient to take differences along arrows and knight's moves.
Generalised twisted partition functions
Petkova, V B
2001-01-01
We consider the set of partition functions that result from the insertion of twist operators compatible with conformal invariance in a given 2D Conformal Field Theory (CFT). A consistency equation, which gives a classification of twists, is written and solved in particular cases. This generalises old results on twisted torus boundary conditions, gives a physical interpretation of Ocneanu's algebraic construction, and might offer a new route to the study of properties of CFT.
Foda, Omar; Wheeler, Michael [Department of Mathematics and Statistics, University of Melbourne, Parkville, Victoria 3010 (Australia)
2007-01-15
Using BKP neutral fermions, we derive a product expression for the generating function of volume-weighted plane partitions that satisfy two conditions. If we call a set of adjacent equal height-h columns, h > 0, an h-path, then 1. Every h-path can assume one of two possible colours. 2. There is a unique way to move along an h-path from any column to another.
Hadamard partitioned difference families
Buratti, Marco
2017-01-01
We prove that every Hadamard difference set of order $u^2$ leads to a partitioned difference family of any order $v\\equiv4u^2$ (mod $8u^2$) and blocks of sizes $4u^2-2u$, $4u^2$ and $4u^2+2u$ provided that the maximal prime power divisors of $v\\over4u^2$ are all greater than $4u^2+2u$.
Boba, Aleksandra; Kostyn, Kamil; Kostyn, Anna; Wojtasik, Wioleta; Dziadas, Mariusz; Preisner, Marta; Szopa, Jan; Kulma, Anna
2017-01-01
Flax (Linum usitatissimum) is a crop plant valued for its oil and fiber. Unfortunately, large losses in cultivation of this plant are caused by fungal infections, with Fusarium oxysporum being one of its most dangerous pathogens. Among the plant's defense strategies, changes in the expression of genes of the shikimate/phenylpropanoid/benzoate pathway and thus in phenolic contents occur. Among the benzoates, salicylic acid, and its methylated form methyl salicylate play an important role in regulating plants' response to stress conditions. Upon treatment of flax plants with the fungus we found that methyl salicylate content increased (4.8-fold of the control) and the expression profiles of the analyzed genes suggest that it is produced most likely from cinnamic acid, through the β-oxidative route. At the same time activation of some genes involved in lignin and flavonoid biosynthesis was observed. We suggest that increased methyl salicylate biosynthesis during flax response to F. oxysporum infection may be associated with phenylpropanoid pathway activation. PMID:28163709
López-Munguía, Agustín; Hernández-Romero, Yanet; Pedraza-Chaverri, José; Miranda-Molina, Alfonso; Regla, Ignacio; Martínez, Ana; Castillo, Edmundo
2011-01-01
Phenylpropanoid glycosides (PPGs) are natural compounds present in several medicinal plants that have high antioxidant power and diverse biological activities. Because of their low content in plants (less than 5% w/w), several chemical synthetic routes to produce PPGs have been developed, but their synthesis is a time consuming process and the achieved yields are often low. In this study, an alternative and efficient two-step biosynthetic route to obtain natural PPG analogues is reported for the first time. Two galactosides were initially synthesized from vanillyl alcohol and homovanillyl alcohol by a transgalactosylation reaction catalyzed by Kluyveromyces lactis β-galactosidase in saturated lactose solutions with a 30%–35% yield. To synthesize PPGs, the galactoconjugates were esterified with saturated and unsaturated hydroxycinnamic acid derivatives using Candida antarctica Lipase B (CaL-B) as a biocatalyst with 40%–60% yields. The scavenging ability of the phenolic raw materials, intermediates and PPGs was evaluated by the 2,2-diphenyl-1-picrylhydrazyl radical (DPPH•) method. It was found that the biosynthesized PPGs had higher scavenging abilities when compared to ascorbic acid, the reference compound, while their antioxidant activities were found similar to that of natural PPGs. Moreover, density functional theory (DFT) calculations were used to determine that the PPGs antioxidant mechanism proceeds through a sequential proton loss single electron transfer (SPLET). The enzymatic process reported in this study is an efficient and versatile route to obtain PPGs from different phenylpropanoid acids, sugars and phenolic alcohols. PMID:21674039
Phenylpropanoid glycosides from Scrophularia scorodonia: in vitro anti-inflammatory activity.
Díaz, Ana María; Abad, María José; Fernández, Lidia; Silván, Ana Maria; De Santos, Javier; Bermejo, Paulina
2004-04-02
Five phenylpropanoid glycosides isolated from Scrophularia scorodonia L. (Scrophulariaceae), namely angoroside A (1), angoroside C (2), angoroside D (3), acteoside (4) and isoacteoside (5), had been evaluated as potential inhibitors of some macrophage functions involved in the inflammatory process. These compounds have been tested in two experimental systems: ionophore-stimulated mouse peritoneal macrophages and human platelets serve as source of COX-1 and 5-LOX, and mouse peritoneal macrophages stimulated with E. coli LPS are the means of testing for COX-2, NO and TNF-alpha activity. None of compounds assayed had a significant effect on LTC(4)-release from calcium ionophore-stimulated mouse peritoneal macrophages. However, the release of PGE(2) by mouse peritoneal macrophages stimulated with calcium ionophore was inhibited by most of these compounds. In the TXB(2)-release assay, acteoside (4), angoroside A (1) and angoroside C (2) showed a significant effect. These five compounds, except angoroside C (2) significantly inhibited LPS-induced PGE(2), NO and TNF-alpha in a concentration-dependent manner. In LPS-stimulated macrophages, the phenylpropanoid glycoside angoroside C (2) only had activity on NO. These results indicate that the pharmacology of these compounds may participate in the anti-inflammatory effect of Scrophularia scorodonia.
Tschaplinski, Timothy J [ORNL; Tsai, Chung-Jui [Michigan Technological University; Harding, Scott A [Michigan Technological University; Lindroth, richard L [University of Wisconsin, Madison; Yuan, Yinan [Michigan Technological University
2006-01-01
Salicin-based phenolic glycosides, hydroxycinnamate derivatives and flavonoid-derived condensed tannins comprise up to one-third of Populus leaf dry mass. Genes regulating the abundance and chemical diversity of these substances have not been comprehensively analysed in tree species exhibiting this metabolically demanding level of phenolic metabolism. Here, shikimate-phenylpropanoid pathway genes thought to give rise to these phenolic products were annotated from the Populus genome, their expression assessed by semiquantitative or quantitative reverse transcription polymerase chain reaction (PCR), and metabolic evidence for function presented. Unlike Arabidopsis, Populus leaves accumulate an array of hydroxycinnamoyl-quinate esters, which is consistent with broadened function of the expanded hydroxycinnamoyl-CoA transferase gene family. Greater flavonoid pathway diversity is also represented, and flavonoid gene families are larger. Consistent with expanded pathway function, most of these genes were upregulated during wound-stimulated condensed tannin synthesis in leaves. The suite of Populus genes regulating phenylpropanoid product accumulation should have important application in managing phenolic carbon pools in relation to climate change and global carbon cycling.
Design, synthesis, molecular docking studies and anti-HBV activity of phenylpropanoid derivatives.
Liu, Sheng; Li, Yubin; Wei, Wanxing; Wang, Kuiwu; Wang, Lisheng; Wang, Jianyi
2016-05-01
In this work, a series of phenylpropanoid derivatives were synthesized, and their anti-hepatitis B virus (HBV) activity was evaluated. Most of the synthesized derivatives showed effective anti-HBV activity. And compound 4d-3 showed the most effective anti-HBV activity, performing strong potent inhibitory not only on the secretion of HBsAg (IC50 = 58.28 μM, SI = 23.26) and HBeAg (IC50 = 97.21 μM, SI = 13.95), but also on the HBV DNA replication (IC50 = 42.28 μM, SI = 32.06). The structure-activity relationships (SARs) of the derivatives had been discussed, which were useful for developing phenylpropanoid derivatives as novel anti-HBV agents. Moreover, the docking study of all synthesized compounds inside the HLA-A protein (PDB ID: 3OX8) active site was carried out to explore the molecular interactions and a molecular target for activity and a modified assay method measuring the interaction between our derivatives and HBcAg was investigated, indicating that the HBV core protein might be their potential target for anti-HBV. This study identified a new class of potent non-nucleoside anti-HBV agents.
VANUDEN, W; PRAS, N; MALINGRE, TM
1990-01-01
In order to improve the production of the cytotoxic lignan podophyllotoxin, seven precursors from the phenylpropanoid-routing and one related compound were fed to cell suspension cultures derived from the rhizomes of Podophyllum hexandrum Royle. These cell cultures were able to convert only coniferi
Identification of transcription factors ZmMYB111and ZmMYB148 involved in phenylpropanoid metabolism
Junjie eZhang
2016-02-01
Full Text Available Maize is the leading crop worldwide in terms of both planting area and total yields, but environmental stresses cause significant losses in productivity. Phenylpropanoid compounds play an important role in plant stress resistance; however, the mechanism of their synthesis is not fully understood, especially in regard to the expression and regulation of key genes. Phenylalanine ammonia-lyase (PAL is the first key enzyme involved in phenylpropanoid metabolism, and it has a significant effect on the synthesis of important phenylpropanoid compounds. According to the results of sequence alignments and functional prediction, we selected two conserved R2R3-MYB transcription factors as candidate genes for the regulation of phenylpropanoid metabolism. The two candidate R2R3-MYB genes, which we named ZmMYB111and ZmMYB148, were cloned, and then their structural characteristics and phylogenetic placement were predicted and analyzed. In addition, a series of evaluations were performed, including expression profiles, subcellular localization, transcription activation, protein-DNA interaction, and transient expression in maize endosperm. Our results indicated that both ZmMYB111 and ZmMYB148 are indeed R2R3-MYB transcription factors and that they may play a regulatory role in PAL gene expression.
Gibbard, Philip L.; Lewin, John
2016-11-01
We review the historical purposes and procedures for stratigraphical division and naming within the Quaternary, and summarize the current requirements for formal partitioning through the International Commission on Stratigraphy (ICS). A raft of new data and evidence has impacted traditional approaches: quasi-continuous records from ocean sediments and ice cores, new numerical dating techniques, and alternative macro-models, such as those provided through Sequence Stratigraphy and Earth-System Science. The practical usefulness of division remains, but there is now greater appreciation of complex Quaternary detail and the modelling of time continua, the latter also extending into the future. There are problems both of commission (what is done, but could be done better) and of omission (what gets left out) in partitioning the Quaternary. These include the challenge set by the use of unconformities as stage boundaries, how to deal with multiphase records in ocean and terrestrial sediments, what happened at the 'Early-Mid- (Middle) Pleistocene Transition', dealing with trends that cross phase boundaries, and the current controversial focus on how to subdivide the Holocene and formally define an 'Anthropocene'.
Chen, Si; Huang, Hung-Yi; Cheng, Ming-Jen; Wu, Chin-Chung; Ishikawa, Tsutomu; Peng, Chien-Fang; Chang, Hsun-Shou; Wang, Chyi-Jia; Wong, Su-Ling; Chen, Ih-Sheng
2013-09-01
Bioassay-guided fractionation of roots from Piper taiwanense led to isolation of three neolignans, diallylcatechol (1) and neotaiwanensols A, B (2, 3), two diphenylpropanoid ethers, taiwandimerols A, B (4, 5), with one phenylpropanoid, 2,3-diacetoxy-1-methoxy-5-allylbenzene (6), previously unknown in nature, together with 18 known compounds (7-24). Their structures were elucidated by spectroscopic evidence. Among the isolates, hydroxychavicol acetate (7), and 4-allylcatechol (8) showed potent inhibitory activities against platelet aggregation induced by collagen, with IC50 values of 2.1, and 5.3 μM, respectively. Hydroxychavicol acetate (7), 4-allylcatechol (8), and trans-caffeicaldehyde (9) showed antitubercular activities against Mycobacterium tuberculosis H37Rv, with MIC values of 30.3, 27.6, and 25.5 μg/mL, respectively.
Sendker, Jandirk; Petereit, Frank; Lautenschläger, Marcus; Hellenbrand, Nils; Hensel, Andreas
2013-01-01
The rational use of hawthorn leafs and flowers from Crataegus spp. for declining cardiac performance is mainly due to flavon-C-glycosides and oligomeric procyanidins (OPC). From OPC-enriched extracts from different batches, a dimeric phenylpropanoid-substituted procyanidin (cinchonain II b, 1) was isolated and characterized by MS, CD, and NMR. Also the presence of higher oligomeric cinchonains (degree of polymerization 3 to 8) in hawthorn extracts was shown by a specific ultrahigh-pressure liquid chromatography-ESI-qTOF-MS method. Interestingly, strong evidence for the occurrence of oligomeric procyanidin hexosides was found by ultrahigh-pressure liquid chromatography-ESI-qTOF-MS analysis which additionally revealed the presence of peaks indicative of dimeric procyanidin hexosides by their exact mass, which were clearly distinguishable from the cinchonain II type peaks. Georg Thieme Verlag KG Stuttgart · New York.
Santiago, Rogelio; Butron, Ana; Arnason, John T; Reid, Lana M; Souto, Xose C; Malvar, Rosa A
2006-03-22
The stem borer Sesamia nonagrioides (Lefèbvre) is the most important insect pest that attacks maize, Zea mays L., in northwestern Spain. Host plant resistance to this borer was investigated in relation to the cell wall phenylpropanoids content in the pith. Eight inbred lines that differ in resistance were analyzed. Three major simple phenolic acids, p-coumaric, trans-ferulic, and cis-ferulic acids, and three isomers of diferulic acid, 8-5', 8-O-4', and 8-5'b (benzofuran form), were identified. The amount of all these compounds was correlated with the resistance level in the genotypes, with the resistant inbreds having the highest concentrations. The role of these compounds in cell wall fortification and lignification is well-documented, suggesting their possible intervention in S. nonagrioides resistance. Future studies that focus on these compounds could be useful to enhance S. nonagroides resistance.
Wangchuk, Phurpa; Pyne, Stephen G; Keller, Paul A; Taweechotipatr, Malai; Kamchonwongpaisane, Sumalee
2014-07-01
With the objective of determining safety and verifying the traditional uses of the Bhutanese medicinal plant, Pleurospermum amabile Craib & W. W. Smith, we investigated its crude extracts and the isolated phytochemicals for their biological activities. Four phenylpropanoids [(E)-isomyristicin (1), (E)-isoapiol (2), methyl eugenol (3) and (E)-isoelemicin (4)] and six furanocoumarins [psoralen (5), bergapten (6), isoimperatorin (7), isopimpinellin (8), oxypeucedanin hydrate (9) and oxypeucedanin methanolate (10)] were isolated from this plant. Among the test samples, compound 10 showed weak antibacterial activity against Bacillus subtilis and best antimalarial activity against the Plasmodium falciparum strains, TM4/8.2 (chloroquine and antifolate sensitive) and K1CB1 (multidrug resistant). None of the test samples showed cytotoxicity. This study generated scientific data that support the traditional medical uses of the plant.
Hong, Seong Su; Oh, Joa Sub
2012-02-01
A new phenylpropanoid ester mixture, (E)-geranylferulic acid (1a) and (Z)-geranylferulic acid (1b), along with 13 known compounds, [6]-gingerol (2), [8]-gingerol (3), [10]-gingerdione (4), 1-dehydro-[6]-gingerdione (5), 1-dehydro-[8]-gingerdione (6), [6]-paradol (7), [8]-paradol (8), [6]-gingeroldiacetate (9), 6-hydroxy-[6]-shogaol (10), galanolactone (11), trans-®-sesquiphellandrol (12), trans-sesquipiperitol (13), and 4α,5β-dihydroxybisabola-2,10-diene (14) were isolated from ethanol extract of Zingiber officinale. Their structures were determined based on the spectroscopic (1D, 2D-NMR and MS) and chemical evidence. All of the isolates were evaluated for their potential to inhibit LPS-induced production of nitric oxide in murine macrophage RAW264.7 cells. Compounds 1-12 were found to inhibit nitric oxide production with IC(50) values ranging from 5.5 to 28.5 μM.
Antioxidant activity and phenylpropanoids of Phlomis lychnitis L.: a traditional herbal tea.
López, Víctor; Jäger, Anna K; Akerreta, Silvia; Cavero, Rita Yolanda; Calvo, Maria Isabel
2010-06-01
Phlomis lychnitis L. (Lamiaceae) is consumed as a traditional herbal tea in Spain. The antioxidant-protective effects as well as its phytoconstituents have never been established. The ability of the methanolic extract to protect cells from oxidative stress was evaluated in rat pheochromocytoma cells (PC12) using hydrogen peroxide as toxic agent. The viability of PC12 cells pre-treated with the methanolic extract of Phlomis lychnitis, determined by the MTT and LDH assays, was significantly improved at the highest dose (p antioxidant activity was confirmed evaluating the capacity of the plant to scavenge ABTS, DPPH, O(2) . (-) radicals and to inhibit XO. Bioassay guided fractionation led to antioxidant compounds. Qualitative HPLC/DAD/ESI/MS analysis reported phenylpropanoids, verbascoside being the major antioxidant constituent.
Ververidis, Filippos; Trantas, Emmanouil; Douglas, Carl; Vollmer, Guenter; Kretzschmar, Georg; Panopoulos, Nickolas
2007-10-01
Plant natural products derived from phenylalanine and the phenylpropanoid pathway are impressive in their chemical diversity and are the result of plant evolution, which has selected for the acquisition of large repertoires of pigments, structural and defensive compounds, all derived from a phenylpropanoid backbone via the plant-specific phenylpropanoid pathway. These compounds are important in plant growth, development and responses to environmental stresses and thus can have large impacts on agricultural productivity. While plant-based medicines containing phenylpropanoid-derived active components have long been used by humans, the benefits of specific flavonoids and other phenylpropanoid-derived compounds to human health and their potential for long-term health benefits have been only recognized more recently. In this part of the review, we discuss the diversity and biosynthetic origins of phenylpropanoids and particularly of the flavonoid and stilbenoid natural products. We then review data pertaining to the modes of action and biological properties of these compounds, referring on their effects on human health and physiology and their roles as plant defense and antimicrobial compounds. This review continues in Part II discussing the use of biotechnological tools targeting the rational reconstruction of multienzyme pathways in order to modify the production of such compounds in plants and model microbial systems for the benefit of agriculture and forestry.
Zhao, Shicheng; Park, Chang Ha; Li, Xiaohua; Kim, Yeon Bok; Yang, Jingli; Sung, Gyoo Byung; Park, Nam Il; Kim, Soonok; Park, Sang Un
2015-09-30
Mulberry (Morus alba L.) is used in traditional Chinese medicine and is the sole food source of the silkworm. Here, 21 cDNAs encoding phenylpropanoid biosynthetic genes and 21 cDNAs encoding triterpene biosynthetic genes were isolated from mulberry. The expression levels of genes involved in these biosynthetic pathways and the accumulation of rutin, betulin, and betulinic acid, important secondary metabolites, were investigated in different plant organs. Most phenylpropanoid and triterpene biosynthetic genes were highly expressed in leaves and/or fruit, and most genes were downregulated during fruit ripening. The accumulation of rutin was more than fivefold higher in leaves than in other organs, and higher levels of betulin and betulinic acid were found in roots and leaves than in fruit. By comparing the contents of these compounds with gene expression levels, we speculate that MaUGT78D1 and MaLUS play important regulatory roles in the rutin and betulin biosynthetic pathways.
Instantons on ALE spaces and orbifold partitions
Dijkgraaf, Robbert; Sułkowski, Piotr
2008-03-01
We consider Script N = 4 theories on ALE spaces of Ak-1 type. As is well known, their partition functions coincide with Ak-1 affine characters. We show that these partition functions are equal to the generating functions of some peculiar classes of partitions which we introduce under the name 'orbifold partitions'. These orbifold partitions turn out to be related to the generalized Frobenius partitions introduced by G. E. Andrews some years ago. We relate the orbifold partitions to the blended partitions and interpret explicitly in terms of a free fermion system.
Instantons on ALE spaces and orbifold partitions
Dijkgraaf, Robbert
2008-01-01
We consider N=4 theories on ALE spaces of $A_{k-1}$ type. As is well known, their partition functions coincide with $A_{k-1}$ affine characters. We show that these partition functions are equal to the generating functions of some peculiar classes of partitions which we introduce under the name 'orbifold partitions'. These orbifold partitions turn out to be related to the generalized Frobenius partitions introduced by G. E. Andrews some years ago. We relate the orbifold partitions to the blended partitions and interpret explicitly in terms of a free fermion system.
Vrancken, K; Holtappels, M; Schoofs, H; Deckers, T; Treutter, D; Valcke, R
2013-11-01
Flavonoids, which are synthesized by the phenylpropanoid-flavonoid pathway, not only contribute to fruit colour and photoprotection, they also may provide antimicrobial and structural components during interaction with micro-organisms. A possible response of this pathway was assessed in both mature and immature leaves of shoots of 2-year-old pear trees cv. Conférence, which were inoculated with the gram-negative bacterium Erwinia amylovora strain SGB 225/12, were mock-inoculated or were left untreated. The phenylpropanoid-flavonoid pathway was analysed by histological studies, by gene expression using RT-qPCR and by HPLC analyses of the metabolites at different time intervals after infection. Transcription patterns of two key genes anthocyanidin reductase (ANR) and chalcone synthase (CHS) related to the phenylpropanoid-flavonoid pathway showed differences between control, mock-inoculated and E. amylovora-inoculated mature leaves, with the strongest reaction 48 h after inoculation. The impact of E. amylovora was also visualised in histological sections, and confirmed by HPLC, as epicatechin -which is produced via ANR- augmented 72 h after inoculation in infected leaf tissue. Besides the effect of treatments, ontogenesis-related differences were found as well. The increase of certain key genes, the rise in epicatechin and the visualisation in several histological sections in this study suggest a non-negligible impact on the phenylpropanoid-flavonoid pathway in Pyrus communis due to inoculation with E. amylovora. In this study, we propose a potential role of this pathway in defence mechanisms, providing a detailed analysis of the response of this system attributable to inoculation with E. amylovora.
Porth Ilga
2011-12-01
Full Text Available Abstract Background In trees, a substantial amount of carbon is directed towards production of phenolics for development and defense. This metabolic pathway is also a major factor in resistance to insect pathogens in spruce. In such gene families, environmental stimuli may have an important effect on the evolutionary fate of duplicated genes, and different expression patterns may indicate functional diversification. Results Gene families in spruce (Picea have expanded to superfamilies, including O-methyltransferases, cytochrome-P450, and dirigents/classIII-peroxidases. Neo-functionalization of superfamily members from different clades is reflected in expression diversification. Genetical genomics can provide new insights into the genetic basis and evolution of insect resistance in plants. Adopting this approach, we merged genotype data (252 SNPs in a segregating pedigree, gene expression levels (for 428 phenylpropanoid-related genes and measures of susceptibility to Pissodes stobi, using a partial-diallel crossing-design with white spruce (Picea glauca. Thirty-eight expressed phenylpropanoid-related genes co-segregated with weevil susceptibility, indicating either causative or reactive effects of these genes to weevil resistance. We identified eight regulatory genomic regions with extensive overlap of quantitative trait loci from susceptibility and growth phenotypes (pQTLs and expression QTL (eQTL hotspots. In particular, SNPs within two different CCoAOMT loci regulate phenotypic variation from a common set of 24 genes and three resistance traits. Conclusions Pest resistance was associated with individual candidate genes as well as with trans-regulatory hotspots along the spruce genome. Our results showed that specific genes within the phenylpropanoid pathway have been duplicated and diversified in the conifer in a process fundamentally different from short-lived angiosperm species. These findings add to the information about the role of the
Partitioning ecosystems for sustainability.
Murray, Martyn G
2016-03-01
Decline in the abundance of renewable natural resources (RNRs) coupled with increasing demands of an expanding human population will greatly intensify competition for Earth's natural resources during this century, yet curiously, analytical approaches to the management of productive ecosystems (ecological theory of wildlife harvesting, tragedy of the commons, green economics, and bioeconomics) give only peripheral attention to the driving influence of competition on resource exploitation. Here, I apply resource competition theory (RCT) to the exploitation of RNRs and derive four general policies in support of their sustainable and equitable use: (1) regulate resource extraction technology to avoid damage to the resource base; (2) increase efficiency of resource use and reduce waste at every step in the resource supply chain and distribution network; (3) partition ecosystems with the harvesting niche as the basic organizing principle for sustainable management of natural resources by multiple users; and (4) increase negative feedback between consumer and resource to bring about long-term sustainable use. A simple policy framework demonstrates how RCT integrates with other elements of sustainability science to better manage productive ecosystems. Several problem areas of RNR management are discussed in the light of RCT, including tragedy of the commons, overharvesting, resource collapse, bycatch, single species quotas, and simplification of ecosystems.
Yi, Jee Hwan; Perumalsamy, Haribalan; Sankarapandian, Karuppasamy; Choi, Byeoung-Ryeol; Ahn, Young-Joon
2015-06-01
Lycoriella ingenua (Dufour) (Diptera: Sciaridae) and Coboldia fuscipes (Meigen) (Diptera: Scatopsidae) are two of the most economically important insect pests of cultivated mushrooms. The toxicities to the fly larvae of the three phenylpropanoids (methyleugenol, myristicin, and safrole) from aerial parts of Asarum sieboldii Miquel (Aristolochiaceae) were compared with those of the currently available carbamate insecticide benfuracarb. In a contact+fumigant mortality bioassay with L. ingenua and C. fuscipes larvae, methyleugenol (1.46 and 2.33 µg/cm2) was the most toxic compound, followed by safrole (2.03 and 2.59 µg/cm2) and myristicin (3.59 and 4.96 µg/cm2), based on 24-h LC50 values. The phenylpropanoids were less toxic than benfuracarb (LC50, 0.75 and 0.55 µg/cm2). In vapor-phase mortality tests with the larvae, the phenylpropanoids were consistently more toxic in closed versus open containers, indicating that the effect of the compounds was largely a result of vapor action. Global efforts to reduce the level of highly toxic synthetic insecticides in the agricultural environment justify further studies on A. sieboldii plant-derived products as potential fumigants for the control of mushroom fly populations in mushroom houses and mushroom compost.
Emiliani, Giovanni; Traversi, Maria Laura; Anichini, Monica; Giachi, Guido; Giovannelli, Alessio
2011-10-01
In temperate regions, latewood is produced when cambial activity declines with the approach of autumnal dormancy. The understanding of the temporal (cambium activity vs dormancy) and spatial (phloem, cambial region, maturing xylem) regulation of key genes involved in the phenylpropanoid pathway during latewood formation represents a crucial step towards providing new insights into the molecular basis of xylogenesis. In this study, the temporal pattern of transcript accumulation of 12 phenylpropanoid genes (PAL1, C4H3/5, C4H4, 4CL3, 4CL4, HCT1, C3H3, CCoAOMT1, COMT2, COMT5, CCR2) was analyzed in maturing xylem and phloem of Picea abies during latewood formation. Quantitative reverse transcription-polymerase chain reaction analyses revealed a well-defined RNA accumulation pattern of genes involved in the phenylpropanoid pathway during latewood formation. Differences in the RNA accumulation patterns were detected between the different tissue types analyzed. The results obtained here demonstrated that the molecular processes involved in monolignol biosynthesis are not restricted to the cambial activity timeframe but continued after the end of cambium cell proliferation. Furthermore, since it has been shown that lignification of maturing xylem takes place in late autumn, we argue on the basis of our data that phloem could play a key role in the monolignol biosynthesis process. © 2011 Institute of Botany, Chinese Academy of Sciences.
Giovanni Emiliani; Maria Laura Traversi; Monica Anichini; Guido Giachi; Aiessio Giovannelli
2011-01-01
In temperate regions,latewood is produced when cambial activity declines with the approach of autumnal dormancy.The understanding of the temporal (cambium activity vs dormancy) and spatial (phloem,cambial region,maturing xylem) regulation of key genes involved in the phenylpropanoid pathway during latewood formation represents a crucial step towards providing new insights into the molecular basis of xylogenesis.In this study,the temporal pattern of transcript accumulation of 12 phenylpropanoid genes (PAL1,C4H3I5,C4H4,4CL3,4CL4,HCT1,C3H3,CCoAOMT1,COMT2,COMT5,CCR2) was analyzed in maturing xylem and phloem of Picea abies during latewood formation.Quantitative reverse transcription-polymerase chain reaction analyses revealed a well-defined RNA accumulation pattern of genes involved in the phenylpropanoid pathway during latewood formation.Differences in the RNA accumulation patterns were detected between the different tissue types analyzed.The results obtained here demonstrated that the molecular processes involved in monolignol biosynthesis are not restricted to the cambial activity timeframe but continued after the end of cambium cell proliferation.Furthermore,since it has been shown that lignification of maturing xylem takes place in late autumn,we argue on the basis of our data that phloem could play a key role in the monolignol biosynthesis process.
Conde, Artur; Pimentel, Diana; Neves, Andreia; Dinis, Lia-Tânia; Bernardo, Sara; Correia, Carlos M.; Gerós, Hernâni; Moutinho-Pereira, José
2016-01-01
Drought, elevated air temperature, and high evaporative demand are increasingly frequent during summer in grape growing areas like the Mediterranean basin, limiting grapevine productivity and berry quality. The foliar exogenous application of kaolin, a radiation-reflecting inert mineral, has proven effective in mitigating the negative impacts of these abiotic stresses in grapevine and other fruit crops, however, little is known about its influence on the composition of the grape berry and on key molecular mechanisms and metabolic pathways notably important for grape berry quality parameters. Here, we performed a thorough molecular and biochemical analysis to assess how foliar application of kaolin influences major secondary metabolism pathways associated with berry quality-traits, leading to biosynthesis of phenolics and anthocyanins, with a focus on the phenylpropanoid, flavonoid (both flavonol- and anthocyanin-biosynthetic) and stilbenoid pathways. In grape berries from different ripening stages, targeted transcriptional analysis by qPCR revealed that several genes involved in these pathways—VvPAL1, VvC4H1, VvSTSs, VvCHS1, VvFLS1, VvDFR, and VvUFGT—were more expressed in response to the foliar kaolin treatment, particularly in the latter maturation phases. In agreement, enzymatic activities of phenylalanine ammonia lyase (PAL), flavonol synthase (FLS), and UDP-glucose:flavonoid 3-O-glucosyltransferase (UFGT) were about two-fold higher in mature or fully mature berries from kaolin-treated plants, suggesting regulation also at a transcriptional level. The expression of the glutathione S-transferase VvGST4, and of the tonoplast anthocyanin transporters VvMATE1 and VvABCC1 were also all significantly increased at véraison and in mature berries, thus, when anthocyanins start to accumulate in the vacuole, in agreement with previously observed higher total concentrations of phenolics and anthocyanins in berries from kaolin-treated plants, especially at full
Teresa eDocimo
2016-01-01
Full Text Available Phenylpropanoids are major secondary metabolites in eggplant (Solanum melongena fruits. Chlorogenic acid (CGA accounts for 70 to 90% of total phenolics in flesh tissues, while anthocyanins are mainly present in the fruit skin. As a contribution to the understanding of the peculiar accumulation of these health-promoting metabolites in eggplant, we report on metabolite abundance, regulation of CGA and anthocyanin biosynthesis, and characterization of candidate CGA biosynthetic genes in S. melongena.Higher contents of CGA, Delphinidin 3-rutinoside and rutin were found in eggplant fruits compared to other tissues, associated to an elevated transcript abundance of structural genes such as PAL, HQT, DFR and ANS, suggesting that active in situ biosynthesis contributes to anthocyanin and CGA accumulation in fruit tissues. Putative orthologs of the two CGA biosynthetic genes PAL and HQT, as well as a variant of a MYB1 transcription factor showing identity with group 6 MYBs, were isolated from an Occidental S. melongena traditional variety and demonstrated to differ from published sequences from Asiatic varieties.In silico analysis of the isolated SmPAL1, SmHQT1, SmANS, and SmMyb1 promoters revealed the presence of several Myb regulatory elements for the biosynthetic genes and unique elements for the TF, suggesting its involvement in other physiological roles beside phenylpropanoid biosynthesis regulation.Transient overexpression in Nicotiana benthamiana leaves of SmMyb1 and of a C-terminal SmMyb1 truncated form (SmMyb1Δ9 resulted in anthocyanin accumulation only of SmMyb1 agro-infiltrated leaves. A yeast two-hybrid assay confirmed the interaction of both SmMyb1 and SmMyb1Δ9 with an anthocyanin-related potato bHLH1 TF. Interestingly, a doubled amount of CGA was detected in both SmMyb1 and SmMyb1Δ9 agro-infiltrated leaves, thus suggesting that the N-terminal region of SmMyb1 is sufficient to activate its synthesis. These data suggest that a deletion of
Gonzalez Delkin O
2006-11-01
Full Text Available Abstract Background Reports of plant molecular responses to pathogenic infections have pinpointed increases in activity of several genes of the phenylpropanoid pathway leading to the synthesis of lignin and flavonoids. The majority of those findings were derived from single gene studies and more recently from several global gene expression analyses. We undertook a global transcriptional analysis focused on the response of genes of the multiple branches of the phenylpropanoid pathway to infection by the Pseudomonas syringae pv. glycinea with or without the avirulence gene avrB to characterize more broadly the contribution of the multiple branches of the pathway to the resistance response in soybean. Transcript abundance in leaves was determined from analysis of soybean cDNA microarray data and hybridizations to RNA blots with specific gene probes. Results The majority of the genes surveyed presented patterns of increased transcript accumulation. Some increased rapidly, 2 and 4 hours after inoculation, while others started to accumulate slowly by 8 – 12 hours. In contrast, transcripts of a few genes decreased in abundance 2 hours post inoculation. Most interestingly was the opposite temporal fluctuation in transcript abundance between early responsive genes in defense (CHS and IFS1 and F3H, the gene encoding a pivotal enzyme in the synthesis of anthocyanins, proanthocyanidins and flavonols. F3H transcripts decreased rapidly 2 hours post inoculation and increased during periods when CHS and IFS transcripts decreased. It was also determined that all but one (CHS4 family member genes (CHS1, CHS2, CHS3, CHS5, CHS6 and CHS7/8 accumulated higher transcript levels during the defense response provoked by the avirulent pathogen challenge. Conclusion Based on the mRNA profiles, these results show the strong bias that soybean has towards increasing the synthesis of isoflavonoid phytoalexins concomitant with the down regulation of genes required for the
Reinprecht, Yarmilla; Yadegari, Zeinab; Perry, Gregory E.; Siddiqua, Mahbuba; Wright, Lori C.; McClean, Phillip E.; Pauls, K. Peter
2013-01-01
Legumes contain a variety of phytochemicals derived from the phenylpropanoid pathway that have important effects on human health as well as seed coat color, plant disease resistance and nodulation. However, the information about the genes involved in this important pathway is fragmentary in common bean (Phaseolus vulgaris L.). The objectives of this research were to isolate genes that function in and control the phenylpropanoid pathway in common bean, determine their genomic locations in silico in common bean and soybean, and analyze sequences of the 4CL gene family in two common bean genotypes. Sequences of phenylpropanoid pathway genes available for common bean or other plant species were aligned, and the conserved regions were used to design sequence-specific primers. The PCR products were cloned and sequenced and the gene sequences along with common bean gene-based (g) markers were BLASTed against the Glycine max v.1.0 genome and the P. vulgaris v.1.0 (Andean) early release genome. In addition, gene sequences were BLASTed against the OAC Rex (Mesoamerican) genome sequence assembly. In total, fragments of 46 structural and regulatory phenylpropanoid pathway genes were characterized in this way and placed in silico on common bean and soybean sequence maps. The maps contain over 250 common bean g and SSR (simple sequence repeat) markers and identify the positions of more than 60 additional phenylpropanoid pathway gene sequences, plus the putative locations of seed coat color genes. The majority of cloned phenylpropanoid pathway gene sequences were mapped to one location in the common bean genome but had two positions in soybean. The comparison of the genomic maps confirmed previous studies, which show that common bean and soybean share genomic regions, including those containing phenylpropanoid pathway gene sequences, with conserved synteny. Indels identified in the comparison of Andean and Mesoamerican common bean 4CL gene sequences might be used to develop inter
Enzymes of phenylpropanoid metabolism in the important medicinal plant Melissa officinalis L.
Weitzel, Corinna; Petersen, Maike
2010-08-01
Lemon balm (Melissa officinalis, Lamiaceae) is a well-known medicinal plant. Amongst the biologically active ingredients are a number of phenolic compounds, the most prominent of which is rosmarinic acid. To obtain better knowledge of the biosynthesis of these phenolic compounds, two enzymes of the general phenylpropanoid pathway, phenylalanine ammonia-lyase (PAL) and 4-coumarate:coenzyme A-ligase (4CL), were investigated in suspension cultures of lemon balm. MoPAL1 and Mo4CL1 cDNAs were cloned and heterologously expressed in Escherichia coli and the enzymes characterised. Expression analysis of both genes showed a correlation with the enzyme activities and rosmarinic acid content during a cultivation period of the suspension culture. Southern-blot analysis suggested the presence of most probably two gene copies in the M. officinalis genome of both PAL and 4CL. The genomic DNA sequences of MoPAL1 and Mo4CL1 were amplified and sequenced. MoPAL1 contains one phase 2 intron of 836 bp at a conserved site, whilst Mo4CL1 was devoid of introns.
Anti-inflammatory and antitumor phenylpropanoid sucrosides from the seeds of Raphanus sativus.
Kim, Ki Hyun; Kim, Chung Sub; Park, Yong Joo; Moon, Eunjung; Choi, Sang Un; Lee, Jei Hyun; Kim, Sun Yeou; Lee, Kang Ro
2015-01-01
A bioassay-guided fractionation and chemical investigation of the MeOH extract of Raphanus sativus seeds resulted in the isolation and identification of eight phenylpropanoid sucrosides (1-8) including two new compounds, named raphasativuside A and B (1-2) from the most active CHCl₃-soluble fraction. The structures of these new compounds were elucidated through spectral analysis, including extensive 2D-NMR data, and chemical reaction experiments. We evaluated the anti-inflammatory effects of 1-8 in lipopolysaccharide (LPS)-stimulated murine microglia BV2 cells. Compounds 2 and 5 exhibited significant inhibitory effect on nitric oxide production in LPS-activated BV-2 cells with IC₅₀ values of 21.63 and 26.96 μM, respectively. All isolates were also evaluated for their antiproliferative activities against four human tumor cell lines (A549, SK-OV-3, SK-MEL-2, and HCT-15). Compounds 1-7 showed consistent cytotoxicity against A549, SK-OV-3, SK-MEL-2, and HCT-15 cell lines with IC50 values of 6.71-27.92 μM. Additionally, the free-radical scavenging activity of 1-8 was assessed using the DPPH (2,2-diphenyl-1-picrylhydrazyl) assay where compounds 1, 3, and 4 scavenged DPPH radical strongly with IC₅₀ values of 23.05, 27.10, and 29.63 μg/mL, respectively.
Zahra Boghrati
2016-08-01
Full Text Available Objective(s: In food industry, the inhibition of tyrosinase is very important, because this enzyme catalyzes the oxidation of phenolic compounds found in fruits and vegetables into quinones, which contribute in undesirable color and taste of fruits and vegetables. Teucrium polium L. var. gnaphalodes (Lamiaceae, a wild-growing flowering plant that has many applications in food preparations and traditional medicine. In Persian language, this medicinal herb is called Kalpoureh. Materials and Methods: 1D- and 2D-NMR experiments were used to determine the chemical structures of the isolated compounds. Antioxidant and tyrosinase inhibitory activities of the isolated compounds were evaluated using DPPH, FRAP and mushroom tyrosinase inhibition assays. Results: In this research, we isolated two phenylpropanoid glycosides including verbascoside and poliumoside and two flavonoids including jaranol and isorhoifolin using chromatographic techniques. We found promising antioxidant and anti-tyrosinase compounds from Teucrium polium L. var. gnaphalodes. Conclusion: To date, different compounds have been isolated and characterized from T. polium including terpenoids and flavonoids. But no phytochemical study has been reported from T. polium var. gnaphalodes. Poliumoside and jaranol showed promising antioxidant and tyrosinase inhibitory activities, respectively.
Reaction of hydroxyl radical with phenylpropanoid glycoside and its derivatives by pulse radiolysis
石益民; 王文锋; 康九红; 师彦平; 贾忠建; 王瑛; 苏保宁; 姚思德; 林念芸; 郑荣梁
1999-01-01
The reaction of hydroxyl radical with 1 phenylpropanoid glycoside （ PPG）, cistanoside C, and its 3 derivatives: 1-O-β-D-2-（p-hydroxyphenyl）-ethanyl-glucose, 6-O-（E）-feruloyl-glucose and 6-O-（E）-p-hydroxy-cinnamoylglucose isolated from folk medicinal herbs was investigated by pulse radiolysis technique respectively. The reaction rate constants were determined by analysis of built-up trace of absorption at λmax of specific transient absorption spectra of PPG and its derivatives upon attacking·OH. All four compounds react with·OH at close to diffusion controlled rate (1.03×109—19.139×109 L·mol-1·s-1), suggesting that they are effective·OH scavengers. The results demonstrated that the numbers of phenolic hydroxyl groups of PPG and its derivatives are directly related to their scavenging activities. By comparing the reaction rates of·OH with 1-O-β-D-2-（p-hydroxyphenyl）-ethanyl-glucose, 6-O-（E）-feruloyl-glueose or 6-O-（E）-p-hydroxy-cinnomoyl-glucose, it is evident that the phenylethyl g
Early Phenylpropanoid Biosynthetic Steps in Cannabis sativa: Link between Genes and Metabolites
Immacolata Coraggio
2013-06-01
Full Text Available Phenylalanine ammonia-lyase (PAL, Cinnamic acid 4-hydroxylase (C4H and 4-Coumarate: CoA ligase (4CL catalyze the first three steps of the general phenylpropanoid pathway whereas chalcone synthase (CHS catalyzes the first specific step towards flavonoids production. This class of specialized metabolites has a wide range of biological functions in plant development and defence and a broad spectrum of therapeutic activities for human health. In this study, we report the isolation of hemp PAL and 4CL cDNA and genomic clones. Through in silico analysis of their deduced amino acid sequences, more than an 80% identity with homologues genes of other plants was shown and phylogenetic relationships were highlighted. Quantitative expression analysis of the four above mentioned genes, PAL and 4CL enzymatic activities, lignin content and NMR metabolite fingerprinting in different Cannabis sativa tissues were evaluated. Furthermore, the use of different substrates to assay PAL and 4CL enzymatic activities indicated that different isoforms were active in different tissues. The diversity in secondary metabolites content observed in leaves (mainly flavonoids and roots (mainly lignin was discussed in relation to gene expression and enzymatic activities data.
Ritter, Holger; Schulz, Georg E
2004-12-01
Because of its key role in secondary phenylpropanoid metabolism, Phe ammonia-lyase is one of the most extensively studied plant enzymes. To provide a basis for detailed structure-function studies, the enzyme from parsley (Petroselinum crispum) was crystallized, and the structure was elucidated at 1.7-A resolution. It contains the unusual electrophilic 4-methylidene-imidazole-5-one group, which is derived from a tripeptide segment in two autocatalytic dehydration reactions. The enzyme resembles His ammonia-lyase from the general His degradation pathway but contains 207 additional residues, mainly in an N-terminal extension rigidifying a domain interface and in an inserted alpha-helical domain restricting the access to the active center. Presumably, Phe ammonia-lyase developed from His ammonia-lyase when fungi and plants diverged from the other kingdoms. A pathway of the catalyzed reaction is proposed in agreement with established biochemical data. The inactivation of the enzyme by a nucleophile is described in detail.
Yarmilla eReinprecht
2013-09-01
Full Text Available Legumes contain a variety of phytochemicals derived from the phenylpropanoid pathway that have important effects on human health as well as seed coat color, plant disease resistance and nodulation. However, the information about the genes involved in this important pathway is fragmentary in common bean (Phaseolus vulgaris L.. The objectives of this research were to isolate genes that function in and control the phenylpropanoid pathway in common bean, determine their genomic locations in silico in common bean and soybean, and analyze sequences of the 4CL gene family in two common bean genotypes. Sequences of phenylpropanoid pathway genes available for common bean or other plant species were aligned, and the conserved regions were used to design sequence-specific primers. The PCR products were cloned and sequenced and the gene sequences along with common bean gene-based (g markers were BLASTed against the Glycine max v.1.0 genome and the P. vulgaris v.1.0 (Andean early release genome. In addition, gene sequences were BLASTed against the OAC Rex (Mesoamerican genome sequence assembly. In total, fragments of 46 structural and regulatory phenylpropanoid pathway genes were characterized in this way and placed in silico on common bean and soybean sequence maps. The maps contain over 250 common bean g and SSR (simple sequence repeat markers and identify the positions of more than 60 additional phenylpropanoid pathway gene sequences, plus the putative locations of seed coat color genes. The majority of cloned phenylpropanoid pathway gene sequences were mapped to one location in the common bean genome but had two positions in soybean. The comparison of the genomic maps confirmed previous studies, which show that common bean and soybean share genomic regions, including those containing phenylpropanoid pathway gene sequences, with conserved synteny. Indels identified in the comparison of Andean and Mesoamerican common bean sequences might be used to develop
Efficient FM Algorithm for VLSI Circuit Partitioning
M.RAJESH
2013-04-01
Full Text Available In FM algorithm initial partitioning matrix of the given circuit is assigned randomly, as a result for larger circuit having hundred or more nodes will take long time to arrive at the final partition if theinitial partitioning matrix is close to the final partitioning then the computation time (iteration required is small . Here we have proposed novel approach to arrive at initial partitioning by using spectralfactorization method the results was verified using several circuits.
Classification algorithms using adaptive partitioning
Binev, Peter
2014-12-01
© 2014 Institute of Mathematical Statistics. Algorithms for binary classification based on adaptive tree partitioning are formulated and analyzed for both their risk performance and their friendliness to numerical implementation. The algorithms can be viewed as generating a set approximation to the Bayes set and thus fall into the general category of set estimators. In contrast with the most studied tree-based algorithms, which utilize piecewise constant approximation on the generated partition [IEEE Trans. Inform. Theory 52 (2006) 1335.1353; Mach. Learn. 66 (2007) 209.242], we consider decorated trees, which allow us to derive higher order methods. Convergence rates for these methods are derived in terms the parameter - of margin conditions and a rate s of best approximation of the Bayes set by decorated adaptive partitions. They can also be expressed in terms of the Besov smoothness β of the regression function that governs its approximability by piecewise polynomials on adaptive partition. The execution of the algorithms does not require knowledge of the smoothness or margin conditions. Besov smoothness conditions are weaker than the commonly used Holder conditions, which govern approximation by nonadaptive partitions, and therefore for a given regression function can result in a higher rate of convergence. This in turn mitigates the compatibility conflict between smoothness and margin parameters.
Gentile statistics and restricted partitions
C S Srivatsan; M V N Murthy; R K Bhaduri
2006-03-01
In a recent paper (Tran et al, Ann. Phys. 311, 204 (2004)), some asymptotic number theoretical results on the partitioning of an integer were derived exploiting its connection to the quantum density of states of a many-particle system. We generalise these results to obtain an asymptotic formula for the restricted or coloured partitions $p_{k}^{s} (n)$, which is the number of partitions of an integer into the summand of th powers of integers such that each power of a given integer may occur utmost times. While the method is not rigorous, it reproduces the well-known asymptotic results for = 1 apart from yielding more general results for arbitrary values of .
Extremal sizes of subspace partitions
Heden, Olof; Nastase, Esmeralda; Sissokho, Papa
2011-01-01
A subspace partition $\\Pi$ of $V=V(n,q)$ is a collection of subspaces of $V$ such that each 1-dimensional subspace of $V$ is in exactly one subspace of $\\Pi$. The size of $\\Pi$ is the number of its subspaces. Let $\\sigma_q(n,t)$ denote the minimum size of a subspace partition of $V$ in which the largest subspace has dimension $t$, and let $\\rho_q(n,t)$ denote the maximum size of a subspace partition of $V$ in which the smallest subspace has dimension $t$. In this paper, we determine the values of $\\sigma_q(n,t)$ and $\\rho_q(n,t)$ for all positive integers $n$ and $t$. Furthermore, we prove that if $n\\geq 2t$, then the minimum size of a maximal partial $t$-spread in $V(n+t-1,q)$ is $\\sigma_q(n,t)$.
The Partition Ensemble Fallacy Fallacy
Nemoto, K; Nemoto, Kae; Braunstein, Samuel L.
2002-01-01
The Partition Ensemble Fallacy was recently applied to claim no quantum coherence exists in coherent states produced by lasers. We show that this claim relies on an untestable belief of a particular prior distribution of absolute phase. One's choice for the prior distribution for an unobservable quantity is a matter of `religion'. We call this principle the Partition Ensemble Fallacy Fallacy. Further, we show an alternative approach to construct a relative-quantity Hilbert subspace where unobservability of certain quantities is guaranteed by global conservation laws. This approach is applied to coherent states and constructs an approximate relative-phase Hilbert subspace.
Partitions of generalized split graphs
Shklarsky, Oren
2012-01-01
We discuss matrix partition problems for graphs that admit a partition into k independent sets and ` cliques. We show that when k + ` 6 2, any matrix M has finitely many (k; `) minimal obstructions and hence all of these problems are polynomial time solvable. We provide upper bounds for the size of any (k; `) minimal obstruction when k = ` = 1 (split graphs), when k = 2; ` = 0 (bipartite graphs), and when k = 0; ` = 2 (co-bipartite graphs). When k = ` = 1, we construct an exponential size spl...
The complexity of string partitioning
Condon, Anne; Thachuk, Chris
2012-01-01
Given a string $w$ over a finite alphabet $\\Sigma$ and an integer $K$, can $w$ be partitioned into strings of length at most $K$, such that there are no \\emph{collisions}? We refer to this question as the \\emph{string partition} problem and show it is \\NP-complete for various definitions of collision and for a number of interesting restrictions including $|\\Sigma|=2$. This establishes the hardness of an important problem in contemporary synthetic biology, namely, oligo design for gene synthesis.
Pietrowska-Borek, Małgorzata; Nuc, Katarzyna
2013-09-01
Cyclic nucleotides (cAMP and cGMP) are important signaling molecules that control a range of cellular functions and modulate different reactions. It is known that under abiotic or biotic stress plant cells synthesize these nucleotides and that they also enhance the activity of the phenylpropanoid pathway. Wondering what is the relation between these two facts, we investigated how the exogenously applied membrane-permeable derivatives, 8-Br-cAMP or 8-Br-cGMP, which are believed to act as the original cyclic nucleotides, affect the expression of the genes for and the specific activity of three enzymes of the phenylpropanoid pathway in Arabidopsis thaliana seedlings. We found that the expression of the genes of phenylalanine ammonia-lyase (PAL2), 4-coumarate:coenzyme A ligase (4CL1) and chalcone synthase (CHS), and the specific activities of PAL (EC 4.3.1.5), 4CL (EC 6.2.1.12) and CHS (EC 2.3.1.74) were induced in the same way by either of these cyclic nucleotides used at 5 μM concentration. None of the possible cAMP and cGMP degradation products (AMP, GMP, adenosine or guanosine) evoked such effects. Expression of PAL1, 4CL2 and 4CL3 were practically not affected. Although the investigated nucleotides induced rapid expression of the aforementioned enzymes, they did not affect the level of anthocyanins within the same period. We discuss the effects exerted by the exogenously administered cyclic nucleotides, their relation with stress and the role which the phenylpropanoid pathways the cyclic nucleotides may play in plants.
Gribaldo Simonetta
2009-02-01
Full Text Available Abstract Background The pioneering ancestor of land plants that conquered terrestrial habitats around 500 million years ago had to face dramatic stresses including UV radiation, desiccation, and microbial attack. This drove a number of adaptations, among which the emergence of the phenylpropanoid pathway was crucial, leading to essential compounds such as flavonoids and lignin. However, the origin of this specific land plant secondary metabolism has not been clarified. Results We have performed an extensive analysis of the taxonomic distribution and phylogeny of Phenylalanine Ammonia Lyase (PAL, which catalyses the first and essential step of the general phenylpropanoid pathway, leading from phenylalanine to p-Coumaric acid and p-Coumaroyl-CoA, the entry points of the flavonoids and lignin routes. We obtained robust evidence that the ancestor of land plants acquired a PAL via horizontal gene transfer (HGT during symbioses with soil bacteria and fungi that are known to have established very early during the first steps of land colonization. This horizontally acquired PAL represented then the basis for further development of the phenylpropanoid pathway and plant radiation on terrestrial environments. Conclusion Our results highlight a possible crucial role of HGT from soil bacteria in the path leading to land colonization by plants and their subsequent evolution. The few functional characterizations of sediment/soil bacterial PAL (production of secondary metabolites with powerful antimicrobial activity or production of pigments suggest that the initial advantage of this horizontally acquired PAL in the ancestor of land plants might have been either defense against an already developed microbial community and/or protection against UV. Reviewers This article was reviewed by Purificación López-García, Janet Siefert, and Eugene Koonin.
Assimilate Partitioning and Plant Development
Yong-Ling Ruan; John W.Patrick; Hans Weber
2010-01-01
@@ It has been a pleasure to organize this special issue of Molecular Plant on 'Assimilate Partitioning and Plant Development'. Assimilate, a collective term describing organic carbon (C) and nitrogen (N), is of paramount importance for plant development and realization of crop productivity.
Gershgorin domains for partitioned matrices
Sluis, A. van der
1979-01-01
Inclusion domains for the eigenvalues of a partitioned matrix are specified in terms of perturbations of its diagonal blocks. The size of such perturbations is measured using the Kantorovitch-Robert-Deutsch vectorial norms. The inclusion domains obtained thereby are compared with inclusion domains o
Optimized Local Trigonometric Bases with Nonuniform Partitions
Qiao Fang LIAN; Yong Ge WANG; Dun Yan YAN
2006-01-01
The authors provide optimized local trigonometric bases with nonuniform partitions which efficiently compress trigonometric functions. Numerical examples demonstrate that in many cases the proposed bases provide better compression than the optimized bases with uniform partitions obtained by Matviyenko.
Partitioning of selected antioxidants in mayonnaise
Jacobsen, Charlotte; Schwarz, K.; Stockmann, H.
1999-01-01
This study examined partitioning of alpha-, beta-, and gamma- tocopherol and six polar antioxidants (Trolox, ferulic acid, caffeic acid, propyl gallate, gallic acid, and catechin) in mayonnaise. Partitioning of antioxidants between different phases was determined after separation of mayonnaise by...
On free fermions and plane partitions
Foda, O; Zuparic, M
2008-01-01
We use free fermion methods to re-derive a result of Okounkov and Reshetikhin relating charged fermions to random plane partitions, and to extend it to relate neutral fermions to strict plane partitions.
Effects of Sequence Partitioning on Compression Rate
Alagoz, B Baykant
2010-01-01
In the paper, a theoretical work is done for investigating effects of splitting data sequence into packs of data set. We proved that a partitioning of data sequence is possible to find such that the entropy rate at each subsequence is lower than entropy rate of the source. Effects of sequence partitioning on overall compression rate are argued on the bases of partitioning statistics, and then, an optimization problem for an optimal partition is defined to improve overall compression rate of a sequence.
Sil, Bipradut; Mukherjee, Chiranjit; Jha, Sumita; Mitra, Adinpunya
2015-07-01
Cotransformed hairy roots containing a gene that encodes a fungal elicitor protein, β-cryptogein, were established in Withania somnifera, a medicinal plant widely used in Indian systems of medicine. To find out whether β-cryptogein protein endogenously elicits the pathway of withasteroid biosynthesis, withaferin A and withanolide A contents along with transcript accumulation of farnesyl pyrophosphate (FPP) synthase, 3-hydroxy-3-methyl-glutaryl-CoA reductase (HMGR), and sterol glycosyltransferase (SGT) were analyzed in both cryptogein-cotransformed and normal hairy roots of W. somnifera. It was observed that the withaferin A and withanolide A contents were drastically higher in normal hairy roots than cryptogein-cotransformed ones. Similar trends were also observed on the levels of transcript accumulation. Subsequently, the enzyme activity of phenylalanine ammonia lyase (PAL), one of the key enzymes of phenylpropanoid pathway, was measured in both cryptogein-cotransformed and normal hairy roots of W. somnifera along with the levels of PAL transcript accumulation. Upliftment of PAL activity was observed in cryptogein-cotransformed hairy roots as compared to the normal ones, and the PAL expression also reflected a similar trend, i.e., enhanced expression in the cryptogein-cotransformed lines. Upliftment of wall-bound ferulic acid accumulation was also observed in the cryptogein-cotransformed lines, as compared to normal hairy root lines. Thus, the outcome of the above studies suggests a metabolic shift from withanolide accumulation to phenylpropanoid biosynthesis in cryptogein-cotransformed hairy roots of W. somnifera.
Reginaldo Bezerra dos Santos
2010-01-01
Full Text Available Dengue fever is one of the main public health problems in the world. Many mosquitoes have developed resistance to the conventional insecticides used. Thus, the search for vegetable extracts and natural substances as alternative insecticides has increased. In this study, chemometric methods were employed to classify a group of terpenoid and phenylpropanoid compounds with biological activity against the larval of the A. aegypti mosquitoes. The AM1 (Austin Model 1 method was used to calculate a set of molecular descriptors (properties for the studied compounds. Then, the descriptors were analyzed using the following methods of pattern recognition: Principal Component Analysis (PCA and Hierarchical Clustering Analysis (HCA. The PCA and HCA methods have shown to be very effective for the classification of the study compounds in two groups (active and inactive. The electronic variables EHOMO-1, EHOMO-2, ELUMO, ELUMO+2, and the structural LogP were used to classify as active and inactive compounds. In most studied compounds, the variables responsible for separating active from inactive compounds were electronic descriptors. Thus, it can be concluded that electronic effects play a fundamental role in the interaction between biological receptor and terpenoid and phenylpropanoid compounds with activity against larval A. aegypti mosquitoes.
Hoang, Van L T; Innes, David J; Shaw, P Nicholas; Monteith, Gregory R; Gidley, Michael J; Dietzgen, Ralf G
2015-07-30
Mango fruits contain a broad spectrum of phenolic compounds which impart potential health benefits; their biosynthesis is catalysed by enzymes in the phenylpropanoid-flavonoid (PF) pathway. The aim of this study was to reveal the variability in genes involved in the PF pathway in three different mango varieties Mangifera indica L., a member of the family Anacardiaceae: Kensington Pride (KP), Irwin (IW) and Nam Doc Mai (NDM) and to determine associations with gene expression and mango flavonoid profiles. A close evolutionary relationship between mango genes and those from the woody species poplar of the Salicaceae family (Populus trichocarpa) and grape of the Vitaceae family (Vitis vinifera), was revealed through phylogenetic analysis of PF pathway genes. We discovered 145 SNPs in total within coding sequences with an average frequency of one SNP every 316 bp. Variety IW had the highest SNP frequency (one SNP every 258 bp) while KP and NDM had similar frequencies (one SNP every 369 bp and 360 bp, respectively). The position in the PF pathway appeared to influence the extent of genetic diversity of the encoded enzymes. The entry point enzymes phenylalanine lyase (PAL), cinnamate 4-mono-oxygenase (C4H) and chalcone synthase (CHS) had low levels of SNP diversity in their coding sequences, whereas anthocyanidin reductase (ANR) showed the highest SNP frequency followed by flavonoid 3'-hydroxylase (F3'H). Quantitative PCR revealed characteristic patterns of gene expression that differed between mango peel and flesh, and between varieties. The combination of mango expressed sequence tags and availability of well-established reference PF biosynthetic genes from other plant species allowed the identification of coding sequences of genes that may lead to the formation of important flavonoid compounds in mango fruits and facilitated characterisation of single nucleotide polymorphisms between varieties. We discovered an association between the extent of sequence variation and
Solving set partitioning problems using lagrangian relaxation
van Krieken, M.G.C.
2006-01-01
This thesis focuses on the set partitioning problem. Given a collection of subsets of a certain root set and costs associated to these subsets, the set partitioning problem is the problem of finding a minimum cost partition of the root set. Many real-life problems, such as vehicle routing and crew s
Ontology Partitioning: Clustering Based Approach
Soraya Setti Ahmed
2015-05-01
Full Text Available The semantic web goal is to share and integrate data across different domains and organizations. The knowledge representations of semantic data are made possible by ontology. As the usage of semantic web increases, construction of the semantic web ontologies is also increased. Moreover, due to the monolithic nature of the ontology various semantic web operations like query answering, data sharing, data matching, data reuse and data integration become more complicated as the size of ontology increases. Partitioning the ontology is the key solution to handle this scalability issue. In this work, we propose a revision and an enhancement of K-means clustering algorithm based on a new semantic similarity measure for partitioning given ontology into high quality modules. The results show that our approach produces meaningful clusters than the traditional algorithm of K-means.
Discretized configurations and partial partitions
Abrams, Aaron; Hower, Valerie
2010-01-01
We show that the discretized configuration space of $k$ points in the $n$-simplex is homotopy equivalent to a wedge of spheres of dimension $n-k+1$. This space is homeomorphic to the order complex of the poset of ordered partial partitions of $\\{1,\\...,n+1\\}$ with exactly $k$ parts. We also compute the Euler characteristic in two different ways, thereby obtaining a topological proof of a combinatorial recurrence satisfied by the Stirling numbers of the second kind.
On higher spin partition functions
Beccaria, M
2015-01-01
We observe that the partition function of the set of all free massless higher spins s=0,1,2,3,... in flat space is equal to one: the ghost determinants cancel against the "physical" ones or, equivalently, the (regularized) total number of degrees of freedom vanishes. This reflects large underlying gauge symmetry and suggests analogy with supersymmetric or topological theory. The Z=1 property extends also to the AdS background, i.e. the 1-loop vacuum partition function of Vasiliev theory is equal to 1 (assuming a particular regularization of the sum over spins); this was noticed earlier as a consistency requirement for the vectorial AdS/CFT duality. We find that Z=1 is also true in the conformal higher spin theory (with higher-derivative d^{2s} kinetic terms) expanded near flat or conformally flat S^4 background. We also consider the partition function of free conformal theory of symmetric traceless rank s tensor field which has 2-derivative kinetic term but only scalar gauge invariance in flat space. This non...
Jones A Maxwell P
2012-05-01
Full Text Available Abstract Background Protoplast technologies offer unique opportunities for fundamental research and to develop novel germplasm through somatic hybridization, organelle transfer, protoclonal variation, and direct insertion of DNA. Applying protoplast technologies to develop Dutch elm disease resistant American elms (Ulmus americana L. was proposed over 30 years ago, but has not been achieved. A primary factor restricting protoplast technology to American elm is the resistance of the cell walls to enzymatic degradation and a long lag phase prior to cell wall re-synthesis and cell division. Results This study suggests that resistance to enzymatic degradation in American elm was due to water soluble phenylpropanoids. Incubating tobacco (Nicotiana tabacum L. leaf tissue, an easily digestible species, in aqueous elm extract inhibits cell wall digestion in a dose dependent manner. This can be mimicked by p-coumaric or ferulic acid, phenylpropanoids known to re-enforce cell walls. Culturing American elm tissue in the presence of 2-aminoindane-2-phosphonic acid (AIP; 10-150 μM, an inhibitor of phenylalanine ammonia lyase (PAL, reduced flavonoid content, decreased tissue browning, and increased isolation rates significantly from 11.8% (±3.27 in controls to 65.3% (±4.60. Protoplasts isolated from callus grown in 100 μM AIP developed cell walls by day 2, had a division rate of 28.5% (±3.59 by day 6, and proliferated into callus by day 14. Heterokaryons were successfully produced using electrofusion and fused protoplasts remained viable when embedded in agarose. Conclusions This study describes a novel approach of modifying phenylpropanoid biosynthesis to facilitate efficient protoplast isolation which has historically been problematic for American elm. This isolation system has facilitated recovery of viable protoplasts capable of rapid cell wall re-synthesis and sustained cell division to form callus. Further, isolated protoplasts survived
Arshia Hematpoor
Full Text Available Aedes aegypti, Aedes albopictus and Culex quinquefasciatus are vectors of dengue fever and West Nile virus diseases. This study was conducted to determine the toxicity, mechanism of action and the binding interaction of three active phenylpropanoids from Piper sarmentosum (Piperaceae toward late 3rd or early 4th larvae of above vectors. A bioassay guided-fractionation on the hexane extract from the roots of Piper sarmentosum led to the isolation and identification of three active phenylpropanoids; asaricin 1, isoasarone 2 and trans-asarone 3. The current study involved evaluation of the toxicity and acetylcholinesterase (AChE inhibition of these compounds against Aedes aegypti, Aedes albopictus and Culex quinquefasciatus larvae. Asaricin 1 and isoasarone 2 were highly potent against Aedes aegypti, Aedes albopictus and Culex quinquefasciatus larvae causing up to 100% mortality at ≤ 15 μg/mL concentration. The ovicidal activity of asaricin 1, isoasarone 2 and trans-asarone 3 were evaluated through egg hatching. Asaricin 1 and isoasarone 2 showed potent ovicidal activity. Ovicidal activity for both compounds was up to 95% at 25μg/mL. Asaricin 1 and isoasarone 2 showed strong inhibition on acetylcholinesterase with relative IC50 values of 0.73 to 1.87 μg/mL respectively. These findings coupled with the high AChE inhibition may suggest that asaricin 1 and isoasarone 2 are neuron toxic compounds toward Aedes aegypti, Aedes albopictus and Culex quinquefasciatus. Further computational docking with Autodock Vina elaborates the possible interaction of asaricin 1 and isoasarone 2 with three possible binding sites of AChE which includes catalytic triads (CAS: S238, E367, H480, the peripheral sites (PAS: E72, W271 and anionic binding site (W83. The binding affinity of asaricin 1 and isoasarone 2 were relatively strong with asaricin 1 showed a higher binding affinity in the anionic pocket.
Hematpoor, Arshia; Liew, Sook Yee; Chong, Wei Lim; Azirun, Mohd Sofian; Lee, Vannajan Sanghiran; Awang, Khalijah
2016-01-01
Aedes aegypti, Aedes albopictus and Culex quinquefasciatus are vectors of dengue fever and West Nile virus diseases. This study was conducted to determine the toxicity, mechanism of action and the binding interaction of three active phenylpropanoids from Piper sarmentosum (Piperaceae) toward late 3rd or early 4th larvae of above vectors. A bioassay guided-fractionation on the hexane extract from the roots of Piper sarmentosum led to the isolation and identification of three active phenylpropanoids; asaricin 1, isoasarone 2 and trans-asarone 3. The current study involved evaluation of the toxicity and acetylcholinesterase (AChE) inhibition of these compounds against Aedes aegypti, Aedes albopictus and Culex quinquefasciatus larvae. Asaricin 1 and isoasarone 2 were highly potent against Aedes aegypti, Aedes albopictus and Culex quinquefasciatus larvae causing up to 100% mortality at ≤ 15 μg/mL concentration. The ovicidal activity of asaricin 1, isoasarone 2 and trans-asarone 3 were evaluated through egg hatching. Asaricin 1 and isoasarone 2 showed potent ovicidal activity. Ovicidal activity for both compounds was up to 95% at 25μg/mL. Asaricin 1 and isoasarone 2 showed strong inhibition on acetylcholinesterase with relative IC50 values of 0.73 to 1.87 μg/mL respectively. These findings coupled with the high AChE inhibition may suggest that asaricin 1 and isoasarone 2 are neuron toxic compounds toward Aedes aegypti, Aedes albopictus and Culex quinquefasciatus. Further computational docking with Autodock Vina elaborates the possible interaction of asaricin 1 and isoasarone 2 with three possible binding sites of AChE which includes catalytic triads (CAS: S238, E367, H480), the peripheral sites (PAS: E72, W271) and anionic binding site (W83). The binding affinity of asaricin 1 and isoasarone 2 were relatively strong with asaricin 1 showed a higher binding affinity in the anionic pocket.
Hematpoor, Arshia; Liew, Sook Yee; Chong, Wei Lim; Azirun, Mohd Sofian; Lee, Vannajan Sanghiran; Awang, Khalijah
2016-01-01
Aedes aegypti, Aedes albopictus and Culex quinquefasciatus are vectors of dengue fever and West Nile virus diseases. This study was conducted to determine the toxicity, mechanism of action and the binding interaction of three active phenylpropanoids from Piper sarmentosum (Piperaceae) toward late 3rd or early 4th larvae of above vectors. A bioassay guided-fractionation on the hexane extract from the roots of Piper sarmentosum led to the isolation and identification of three active phenylpropanoids; asaricin 1, isoasarone 2 and trans-asarone 3. The current study involved evaluation of the toxicity and acetylcholinesterase (AChE) inhibition of these compounds against Aedes aegypti, Aedes albopictus and Culex quinquefasciatus larvae. Asaricin 1 and isoasarone 2 were highly potent against Aedes aegypti, Aedes albopictus and Culex quinquefasciatus larvae causing up to 100% mortality at ≤ 15 μg/mL concentration. The ovicidal activity of asaricin 1, isoasarone 2 and trans-asarone 3 were evaluated through egg hatching. Asaricin 1 and isoasarone 2 showed potent ovicidal activity. Ovicidal activity for both compounds was up to 95% at 25μg/mL. Asaricin 1 and isoasarone 2 showed strong inhibition on acetylcholinesterase with relative IC50 values of 0.73 to 1.87 μg/mL respectively. These findings coupled with the high AChE inhibition may suggest that asaricin 1 and isoasarone 2 are neuron toxic compounds toward Aedes aegypti, Aedes albopictus and Culex quinquefasciatus. Further computational docking with Autodock Vina elaborates the possible interaction of asaricin 1 and isoasarone 2 with three possible binding sites of AChE which includes catalytic triads (CAS: S238, E367, H480), the peripheral sites (PAS: E72, W271) and anionic binding site (W83). The binding affinity of asaricin 1 and isoasarone 2 were relatively strong with asaricin 1 showed a higher binding affinity in the anionic pocket. PMID:27152416
Polona Kogovšek
Full Text Available Potato production is one of the most important agricultural sectors, and it is challenged by various detrimental factors, including virus infections. To control losses in potato production, knowledge about the virus-plant interactions is crucial. Here, we investigated the molecular processes in potato plants as a result of Potato virus Y (PVY infection, the most economically important potato viral pathogen. We performed an integrative study that links changes in the metabolome and gene expression in potato leaves inoculated with the mild PVYN and aggressive PVYNTN isolates, for different times through disease development. At the beginning of infection (1 day post-inoculation, virus-infected plants showed an initial decrease in the concentrations of metabolites connected to sugar and amino-acid metabolism, the TCA cycle, the GABA shunt, ROS scavangers, and phenylpropanoids, relative to the control plants. A pronounced increase in those metabolites was detected at the start of the strong viral multiplication in infected leaves. The alterations in these metabolic pathways were also seen at the gene expression level, as analysed by quantitative PCR. In addition, the systemic response in the metabolome to PVY infection was analysed. Systemic leaves showed a less-pronounced response with fewer metabolites altered, while phenylpropanoid-associated metabolites were strongly accumulated. There was a more rapid onset of accumulation of ROS scavengers in leaves inoculated with PVYN than those inoculated with PVYNTN. This appears to be related to the lower damage observed for leaves of potato infected with the milder PVYN strain, and at least partially explains the differences between the phenotypes observed.
Asselin, Jo Ann E; Lin, Jinshan; Perez-Quintero, Alvaro L; Gentzel, Irene; Majerczak, Doris; Opiyo, Stephen O; Zhao, Wanying; Paek, Seung-Mann; Kim, Min Gab; Coplin, David L; Blakeslee, Joshua J; Mackey, David
2015-03-01
AvrE family type III effector proteins share the ability to suppress host defenses, induce disease-associated cell death, and promote bacterial growth. However, despite widespread contributions to numerous bacterial diseases in agriculturally important plants, the mode of action of these effectors remains largely unknown. WtsE is an AvrE family member required for the ability of Pantoea stewartii ssp. stewartii (Pnss) to proliferate efficiently and cause wilt and leaf blight symptoms in maize (Zea mays) plants. Notably, when WtsE is delivered by a heterologous system into the leaf cells of susceptible maize seedlings, it alone produces water-soaked disease symptoms reminiscent of those produced by Pnss. Thus, WtsE is a pathogenicity and virulence factor in maize, and an Escherichia coli heterologous delivery system can be used to study the activity of WtsE in isolation from other factors produced by Pnss. Transcriptional profiling of maize revealed the effects of WtsE, including induction of genes involved in secondary metabolism and suppression of genes involved in photosynthesis. Targeted metabolite quantification revealed that WtsE perturbs maize metabolism, including the induction of coumaroyl tyramine. The ability of mutant WtsE derivatives to elicit transcriptional and metabolic changes in susceptible maize seedlings correlated with their ability to promote disease. Furthermore, chemical inhibitors that block metabolic flux into the phenylpropanoid pathways targeted by WtsE also disrupted the pathogenicity and virulence activity of WtsE. While numerous metabolites produced downstream of the shikimate pathway are known to promote plant defense, our results indicate that misregulated induction of phenylpropanoid metabolism also can be used to promote pathogen virulence. © 2015 American Society of Plant Biologists. All Rights Reserved.
Intrinsic energy partition in fission
Mirea M.
2013-03-01
Full Text Available The intrinsic energy partition between two complementary fission fragments is investigated microscopically. The intrinsic excitation energy of fission fragments is dynamically evaluated in terms of the time-dependent pairing equations. These equations are corroborated with two conditions. One of them fixes the number of particles and the other separates the pairing active spaces associated to the two fragments in the vicinity of the scission configuration. The excitation energy in a wide distribution of fission fragments is calculated for the 234U parent nucleus.
On the partition dimension of unicyclic graphs
Rodriguez-Velazquez, Juan A; Fernau, Henning
2011-01-01
Given an ordered partition $\\Pi =\\{P_1,P_2, ...,P_t\\}$ of the vertex set $V$ of a connected graph $G=(V,E)$, the \\emph{partition representation} of a vertex $v\\in V$ with respect to the partition $\\Pi$ is the vector $r(v|\\Pi)=(d(v,P_1),d(v,P_2),...,d(v,P_t))$, where $d(v,P_i)$ represents the distance between the vertex $v$ and the set $P_i$. A partition $\\Pi$ of $V$ is a \\emph{resolving partition} if different vertices of $G$ have different partition representations, i.e., for every pair of vertices $u,v\\in V$, $r(u|\\Pi)\
On the partition dimension of trees
Rodriguez-Velazquez, Juan A; Lemanska, Magdalena
2011-01-01
Given an ordered partition $\\Pi =\\{P_1,P_2, ...,P_t\\}$ of the vertex set $V$ of a connected graph $G=(V,E)$, the \\emph{partition representation} of a vertex $v\\in V$ with respect to the partition $\\Pi$ is the vector $r(v|\\Pi)=(d(v,P_1),d(v,P_2),...,d(v,P_t))$, where $d(v,P_i)$ represents the distance between the vertex $v$ and the set $P_i$. A partition $\\Pi$ of $V$ is a \\emph{resolving partition} of $G$ if different vertices of $G$ have different partition representations, i.e., for every pair of vertices $u,v\\in V$, $r(u|\\Pi)\
Hardware/software partitioning in Verilog.
2002-01-01
We propose in this paper an algebraic approach to hardware/software partitioning in Verilog HDL. We explore a collection of algebraic laws for Verilog programs, from which we design a set of syntax-based algebraic rules to conduct hardware/software partitioning. The co-specification language and the target hardware and software description languages are specific subsets of Verilog, which brings forth our successful verification for the correctness of the partitioning process by algebra of Ver...
Data Partitioning View of Mining Big Data
Zhang, Shichao
2016-01-01
There are two main approximations of mining big data in memory. One is to partition a big dataset to several subsets, so as to mine each subset in memory. By this way, global patterns can be obtained by synthesizing all local patterns discovered from these subsets. Another is the statistical sampling method. This indicates that data partitioning should be an important strategy for mining big data. This paper recalls our work on mining big data with a data partitioning and shows some interesti...
Evolution of Task Partitioning in Swarm Robotics
Ferrante, Eliseo,; Duenez-Guzman, E.; Turgut, A. E.; Wenseleers, Tom
2013-01-01
International audience; Task-partitioning refers to the process whereby a task is divided into two or more sub-tasks. Through task partitioning both efficiency and effectiveness can be improved provided the right environmental conditions. We synthesize self-organized task partitioning behaviors for a swarm of mobile robots using artificial evolution. Through validation experiments, we show that the synthesized behaviors exploits behavioral specialization despite being based on homogeneous ind...
Combinatorial set theory partition relations for cardinals
Erdös, P; Hajnal, A; Rado, P
2011-01-01
This work presents the most important combinatorial ideas in partition calculus and discusses ordinary partition relations for cardinals without the assumption of the generalized continuum hypothesis. A separate section of the book describes the main partition symbols scattered in the literature. A chapter on the applications of the combinatorial methods in partition calculus includes a section on topology with Arhangel''skii''s famous result that a first countable compact Hausdorff space has cardinality, at most continuum. Several sections on set mappings are included as well as an account of
HPAM: Hirshfeld partitioned atomic multipoles
Elking, Dennis M.; Perera, Lalith; Pedersen, Lee G.
2012-02-01
An implementation of the Hirshfeld (HD) and Hirshfeld-Iterated (HD-I) atomic charge density partitioning schemes is described. Atomic charges and atomic multipoles are calculated from the HD and HD-I atomic charge densities for arbitrary atomic multipole rank l on molecules of arbitrary shape and size. The HD and HD-I atomic charges/multipoles are tested by comparing molecular multipole moments and the electrostatic potential (ESP) surrounding a molecule with their reference ab initio values. In general, the HD-I atomic charges/multipoles are found to better reproduce ab initio electrostatic properties over HD atomic charges/multipoles. A systematic increase in precision for reproducing ab initio electrostatic properties is demonstrated by increasing the atomic multipole rank from l=0 (atomic charges) to l=4 (atomic hexadecapoles). Both HD and HD-I atomic multipoles up to rank l are shown to exactly reproduce ab initio molecular multipole moments of rank L for L⩽l. In addition, molecular dipole moments calculated by HD, HD-I, and ChelpG atomic charges only ( l=0) are compared with reference ab initio values. Significant errors in reproducing ab initio molecular dipole moments are found if only HD or HD-I atomic charges used. Program summaryProgram title: HPAM Catalogue identifier: AEKP_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AEKP_v1_0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: GNU General Public License v2 No. of lines in distributed program, including test data, etc.: 500 809 No. of bytes in distributed program, including test data, etc.: 13 424 494 Distribution format: tar.gz Programming language: C Computer: Any Operating system: Linux RAM: Typically, a few hundred megabytes Classification: 16.13 External routines: The program requires 'formatted checkpoint' files obtained from the Gaussian 03 or Gaussian 09 quantum chemistry program. Nature of problem: An ab initio
Crossings and nestings in colored set partitions
Marberg, Eric
2012-01-01
Several years ago, Chen, Deng, Du, Stanley, and Yan introduced the notion of $k$-crossings and $k$-nestings for set partitions, and proved that the sizes of the largest $k$-crossings and $k$-nestings in the partitions of an $n$-set possess a symmetric joint distribution. The present work extends these results to $r$-colored set partitions, by which we mean set partitions whose arcs are labeled by an $r$-element set. A $k$-crossing or $k$-nesting in this context is a sequence or arcs, all with the same color, which form a $k$-crossing or $k$-nesting in the usual sense. To prove our extension, we produce a bijection from $r$-colored set partitions to certain sequences of $r$-partite partitions, which in the uncolored case specializes to a novel description of the map from set partitions to vacillating tableaux given by Chen et al. Among other applications, we explain how our construction implies recent results of Chen and Guo on colored matchings, and also an analogous symmetric joint distribution of crossings ...
Compactified webs and domain wall partition functions
Shabbir, Khurram [Government College University, Department of Mathematics, Lahore (Pakistan)
2017-04-15
In this paper we use the topological vertex formalism to calculate a generalization of the ''domain wall'' partition function of M-strings. This generalization allows calculation of partition function of certain compactified webs using a simple gluing algorithm similar to M-strings case. (orig.)
Graph Partitioning Models for Parallel Computing
Hendrickson, B.; Kolda, T.G.
1999-03-02
Calculations can naturally be described as graphs in which vertices represent computation and edges reflect data dependencies. By partitioning the vertices of a graph, the calculation can be divided among processors of a parallel computer. However, the standard methodology for graph partitioning minimizes the wrong metric and lacks expressibility. We survey several recently proposed alternatives and discuss their relative merits.
Partition functions for supersymmetric black holes
Manschot, J.
2008-01-01
This thesis presents a number of results on partition functions for four-dimensional supersymmetric black holes. These partition functions are important tools to explain the entropy of black holes from a microscopic point of view. Such a microscopic explanation was desired after the association of a
[On the partition of acupuncture academic schools].
Yang, Pengyan; Luo, Xi; Xia, Youbing
2016-05-01
Nowadays extensive attention has been paid on the research of acupuncture academic schools, however, a widely accepted method of partition of acupuncture academic schools is still in need. In this paper, the methods of partition of acupuncture academic schools in the history have been arranged, and three typical methods of"partition of five schools" "partition of eighteen schools" and "two-stage based partition" are summarized. After adeep analysis on the disadvantages and advantages of these three methods, a new method of partition of acupuncture academic schools that is called "three-stage based partition" is proposed. In this method, after the overall acupuncture academic schools are divided into an ancient stage, a modern stage and a contemporary stage, each schoolis divided into its sub-school category. It is believed that this method of partition can remedy the weaknesses ofcurrent methods, but also explore a new model of inheritance and development under a different aspect through thedifferentiation and interaction of acupuncture academic schools at three stages.
Data Partitioning Technique for Improved Video Prioritization
Ismail Amin Ali
2017-07-01
Full Text Available A compressed video bitstream can be partitioned according to the coding priority of the data, allowing prioritized wireless communication or selective dropping in a congested channel. Known as data partitioning in the H.264/Advanced Video Coding (AVC codec, this paper introduces a further sub-partition of one of the H.264/AVC codec’s three data-partitions. Results show a 5 dB improvement in Peak Signal-to-Noise Ratio (PSNR through this innovation. In particular, the data partition containing intra-coded residuals is sub-divided into data from: those macroblocks (MBs naturally intra-coded, and those MBs forcibly inserted for non-periodic intra-refresh. Interactive user-to-user video streaming can benefit, as then HTTP adaptive streaming is inappropriate and the High Efficiency Video Coding (HEVC codec is too energy demanding.
Rohde, Antje; Morreel, Kris; Ralph, John; Goeminne, Geert; Hostyn, Vanessa; De Rycke, Riet; Kushnir, Sergei; Van Doorsselaere, Jan; Joseleau, Jean-Paul; Vuylsteke, Marnik; Van Driessche, Gonzalez; Van Beeumen, Jozef; Messens, Eric; Boerjan, Wout
2004-01-01
The first enzyme of the phenylpropanoid pathway, Phe ammonia-lyase (PAL), is encoded by four genes in Arabidopsis thaliana. Whereas PAL function is well established in various plants, an insight into the functional significance of individual gene family members is lacking. We show that in the absence of clear phenotypic alterations in the Arabidopsis pall and pal2 single mutants and with limited phenotypic alterations in the pall pal2 double mutant, significant modifications occur in the tran...
Fock-Bastide, Isabelle; Palama, Tony Lionel; Bory, Séverine; Lécolier, Aurélie; Noirot, Michel; Joët, Thierry
2014-01-01
In Vanilla planifolia pods, development of flavor precursors is dependent on the phenylpropanoid pathway. The distinctive vanilla aroma is produced by numerous phenolic compounds of which vanillin is the most important. Because of the economic importance of vanilla, vanillin biosynthetic pathways have been extensively studied but agreement has not yet been reached on the processes leading to its accumulation. In order to explore the transcriptional control exerted on these pathways, five key phenylpropanoid genes expressed during pod development were identified and their mRNA accumulation profiles were evaluated during pod development and maturation using quantitative real-time PCR. As a prerequisite for expression analysis using qRT-PCR, five potential reference genes were tested, and two genes encoding Actin and EF1 were shown to be the most stable reference genes for accurate normalization during pod development. For the first time, genes encoding a phenylalanine ammonia-lyase (VpPAL1) and a cinnamate 4-hydroxylase (VpC4H1) were identified in vanilla pods and studied during maturation. Among phenylpropanoid genes, differential regulation was observed from 3 to 8 months after pollination. VpPAL1 was gradually up-regulated, reaching the maximum expression level at maturity. In contrast, genes encoding 4HBS, C4H, OMT2 and OMT3 did not show significant increase in expression levels after the fourth month post-pollination. Expression profiling of these key phenylpropanoid genes is also discussed in light of accumulation patterns for key phenolic compounds. Interestingly, VpPAL1 gene expression was shown to be positively correlated to maturation and vanillin accumulation.
Rohde, Antje; Morreel, Kris; Ralph, John; Goeminne, Geert; Hostyn, Vanessa; De Rycke, Riet; Kushnir, Sergej; Van Doorsselaere, Jan; Joseleau, Jean-Paul; Vuylsteke, Marnik; Van Driessche, Gonzalez; Van Beeumen, Jozef; Messens, Eric; Boerjan, Wout
2004-10-01
The first enzyme of the phenylpropanoid pathway, Phe ammonia-lyase (PAL), is encoded by four genes in Arabidopsis thaliana. Whereas PAL function is well established in various plants, an insight into the functional significance of individual gene family members is lacking. We show that in the absence of clear phenotypic alterations in the Arabidopsis pal1 and pal2 single mutants and with limited phenotypic alterations in the pal1 pal2 double mutant, significant modifications occur in the transcriptome and metabolome of the pal mutants. The disruption of PAL led to transcriptomic adaptation of components of the phenylpropanoid biosynthesis, carbohydrate metabolism, and amino acid metabolism, revealing complex interactions at the level of gene expression between these pathways. Corresponding biochemical changes included a decrease in the three major flavonol glycosides, glycosylated vanillic acid, scopolin, and two novel feruloyl malates coupled to coniferyl alcohol. Moreover, Phe overaccumulated in the double mutant, and the levels of many other amino acids were significantly imbalanced. The lignin content was significantly reduced, and the syringyl/guaiacyl ratio of lignin monomers had increased. Together, from the molecular phenotype, common and specific functions of PAL1 and PAL2 are delineated, and PAL1 is qualified as being more important for the generation of phenylpropanoids.
Yang, Li; Zhao, Xin; Ran, Lingyu; Li, Chaofeng; Fan, Di; Luo, Keming
2017-01-01
Some R2R3 MYB transcription factors have been shown to be major regulators of phenylpropanoid biosynthetic pathway and impact secondary wall formation in plants. In this study, we describe the functional characterization of PtoMYB156, encoding a R2R3-MYB transcription factor, from Populus tomentosa. Expression pattern analysis showed that PtoMYB156 is widely expressed in all tissues examined, but predominantly in leaves and developing wood cells. PtoMYB156 localized to the nucleus and acted as a transcriptional repressor. Overexpression of PtoMYB156 in poplar repressed phenylpropanoid biosynthetic genes, leading to a reduction in the amounts of total phenolic and flavonoid compounds. Transgenic plants overexpressing PtoMYB156 also displayed a dramatic decrease in secondary wall thicknesses of xylem fibers and the content of cellulose, lignin and xylose compared with wild-type plants. Transcript accumulation of secondary wall biosynthetic genes was down-regulated by PtoMYB156 overexpression. Transcriptional activation assays revealed that PtoMYB156 was able to repress the promoter activities of poplar CESA17, C4H2 and GT43B. By contrast, knockout of PtoMYB156 by CRISPR/Cas9 in poplar resulted in ectopic deposition of lignin, xylan and cellulose during secondary cell wall formation. Taken together, these results show that PtoMYB156 may repress phenylpropanoid biosynthesis and negatively regulate secondary cell wall formation in poplar. PMID:28117379
GÓMEZ‐VÁSQUEZ, ROCÍO; DAY, ROBERT; BUSCHMANN, HOLGER; RANDLES, SOPHIE; BEECHING, JOHN R.; COOPER, RICHARD M.
2004-01-01
• Background and aims Control of diseases in the key tropical staple, cassava, is dependent on resistant genotypes, but the innate mechanisms are unknown. The aim was to study phenylpropanoids and associated enzymes as possible defence components. • Methods Phenylalanine ammonia‐lyase (PAL), phenylpropanoids and peroxidases (POD) were investigated in elicited cassava suspension cells and leaves. Yeast elicitor was the most effective of several microbial and endogenous elicitors. Fungitoxicity was determined against the cassava pathogens Fusarium solani, F. oxysporum and the saprotroph Trichoderma harzianum. • Key results A single and rapid (≥2–3 min) oxidative burst, measured as hydrogen peroxide, occurred in elicited cells. PAL activity was induced maximally at 15 h and was preceded by PAL mRNA accumulation, which peaked at 9 h. Symplasmic POD activity increased four‐fold in cells, 48 h post‐elicitation. POD isoforms (2–7 isoforms, pI 3·1–8·8) were detected in elicited and unelicited cells, extracellular medium and leaves but two extracellular isoforms were enhanced post‐elicitation. Also expression of a cassava peroxidase gene MecPOD1 increased in elicited cells. Only anionic forms oxidized scopoletin, with highest activity by isoform pI 3·6, present in all samples. Unidentified phenolics and possibly scopolin increased post‐elicitation, but there was no enhancement of scopoletin, rutin or kaempferol‐3‐O‐rutinoside concentration. Fungal germ tube elongation was inhibited more than germination by esculetin, ferulic acid, quercetin and scopoletin. T. harzianum was generally more sensitive than the pathogens and was inhibited by ≥50 µg mL–1 of ferulic acid and quercetin and ≥10 µg mL–1 of scopoletin. • Conclusions Phenolic levels in cells were not enhanced and were, theoretically, too low to be inhibitory. However, in combination and when oxidized they may contribute to defence, because oxidation of esculetin and
Anterola, Aldwin M.; Jeon, Jae-Heung; Davin, Laurence B.; Lewis, Norman G.
2002-01-01
Transcriptional profiling of the phenylpropanoid pathway in Pinus taeda cell suspension cultures was carried out using quantitative real time PCR analyses of all known genes involved in the biosynthesis of the two monolignols, p-coumaryl and coniferyl alcohols (lignin/lignan precursors). When the cells were transferred to a medium containing 8% sucrose and 20 mm potassium iodide, the monolignol/phenylpropanoid pathway was induced, and transcript levels for phenylalanine ammonia lyase, cinnamate 4-hydroxylase, p-coumarate 3-hydroxylase, 4-coumarate:CoA ligase, caffeoyl-CoA O-methyltransferase, cinnamoyl-CoA reductase, and cinnamyl alcohol dehydrogenase were coordinately up-regulated. Provision of increasing levels of exogenously supplied Phe to saturating levels (40 mm) to the induction medium resulted in further up-regulation of their transcript levels in the P. taeda cell cultures; this in turn was accompanied by considerable increases in both p-coumaryl and coniferyl alcohol formation and excretion. By contrast, transcript levels for both cinnamate 4-hydroxylase and p-coumarate 3-hydroxylase were only slightly up-regulated. These data, when considered together with metabolic profiling results and genetic manipulation of various plant species, reveal that carbon allocation to the pathway and its differential distribution into the two monolignols is controlled by Phe supply and differential modulation of cinnamate 4-hydroxylase and p-coumarate 3-hydroxylase activities, respectively. The coordinated up-regulation of phenylalanine ammonia lyase, 4-coumarate:CoA ligase, caffeoyl-CoA O-methyltransferase, cinnamoyl-CoA reductase and cinnamyl alcohol dehydrogenase in the presence of increasing concentrations of Phe also indicates that these steps are not truly rate-limiting, because they are modulated according to metabolic demand. Finally, the transcript profile of a putative acid/ester O-methyltransferase, proposed as an alternative catalyst for O-methylation leading
Reinforcement learning with partitioning function system
李伟; 叶庆泰; 朱昌明
2004-01-01
The size of state-space is the limiting factor in applying reinforcement learning algorithms to practical cases. A reinforcement learning system with partitioning function (RLWPF) is established, in which statespace is partitioned into several regions. Inside the performance principle of RLWPF is based on a Semi-Markov decision process and has general significance. It can be applied to any reinforcement learning with a large statespace. In RLWPF, the partitioning module dispatches agents into different regions in order to decrease the state-space of each agent. This article proves the convergence of the SARSA algorithm for a Semi-Markov decision process, ensuring the convergence of RLWPF by analyzing the equivalence of two value functions in two Semi-Markov decision processes before and after partitioning. This article can show that the optimal policy learned by RLWPF is consistent with prior domain knowledge. An elevator group system is devised to decrease the average waiting time of passengers. Four agents control four elevator cars respectively. Based on RLWPF, a partitioning module is developed through defining a uniform round trip time as the partitioning criteria, making the wait time of most passengers more or less identical then elevator cars should only answer hall calls in their own region. Compared with ordinary elevator systems and reinforcement learning systems without partitioning module, the performance results show the advantage of RLWPF.
DYNAMIC TASK PARTITIONING MODEL IN PARALLEL COMPUTING
Javed Ali
2012-04-01
Full Text Available Parallel computing systems compose task partitioning strategies in a true multiprocessing manner. Such systems share the algorithm and processing unit as computing resources which leads to highly inter process communications capabilities. The main part of the proposed algorithm is resource management unit which performs task partitioning and co-scheduling .In this paper, we present a technique for integrated task partitioning and co-scheduling on the privately owned network. We focus on real-time and non preemptive systems. A large variety of experiments have been conducted on the proposed algorithm using synthetic and real tasks. Goal of computation model is to provide a realistic representation of the costs of programming The results show the benefit of the task partitioning. The main characteristics of our method are optimal scheduling and strong link between partitioning, scheduling and communication. Some important models for task partitioning are also discussed in the paper. We target the algorithm for task partitioning which improve the inter process communication between the tasks and use the recourses of the system in the efficient manner. The proposed algorithm contributes the inter-process communication cost minimization amongst the executing processes.
Partial domain wall partition functions
Foda, O
2012-01-01
We consider six-vertex model configurations on a rectangular lattice with n (N) horizontal (vertical) lines, and "partial domain wall boundary conditions" defined as 1. all 2n arrows on the left and right boundaries point inwards, 2. n_u (n_l) arrows on the upper (lower) boundary, such that n_u + n_l = N - n, also point inwards, 3. all remaining n+N arrows on the upper and lower boundaries point outwards, and 4. all spin configurations on the upper and lower boundaries are summed over. To generate (n-by-N) "partial domain wall configurations", one can start from A. (N-by-N) configurations with domain wall boundary conditions and delete n_u (n_l) upper (lower) horizontal lines, or B. (2n-by-N) configurations that represent the scalar product of an n-magnon Bethe eigenstate and an n-magnon generic state on an N-site spin-1/2 chain, and delete the n lines that represent the Bethe eigenstate. The corresponding "partial domain wall partition function" is computed in construction {A} ({B}) as an N-by-N (n-by-n) det...
Energy partitioning schemes: a dilemma.
Mayer, I
2007-01-01
Two closely related energy partitioning schemes, in which the total energy is presented as a sum of atomic and diatomic contributions by using the "atomic decomposition of identity", are compared on the example of N,N-dimethylformamide, a simple but chemically rich molecule. Both schemes account for different intramolecular interactions, for instance they identify the weak C-H...O intramolecular interactions, but give completely different numbers. (The energy decomposition scheme based on the virial theorem is also considered.) The comparison of the two schemes resulted in a dilemma which is especially striking when these schemes are applied for molecules distorted from their equilibrium structures: one either gets numbers which are "on the chemical scale" and have quite appealing values at the equilibrium molecular geometries, but exhibiting a counter-intuitive distance dependence (the two-center energy components increase in absolute value with the increase of the interatomic distances)--or numbers with too large absolute values but "correct" distance behaviour. The problem is connected with the quick decay of the diatomic kinetic energy components.
An Algebraic Hardware/Software Partitioning Algorithm
秦胜潮; 何积丰; 裘宗燕; 张乃孝
2002-01-01
Hardware and software co-design is a design technique which delivers computer systems comprising hardware and software components. A critical phase of the co-design process is to decompose a program into hardware and software. This paper proposes an algebraic partitioning algorithm whose correctness is verified in program algebra. The authors introduce a program analysis phase before program partitioning and develop a collection of syntax-based splitting rules. The former provides the information for moving operations from software to hardware and reducing the interaction between components, and the latter supports a compositional approach to program partitioning.
PARTITION PROPERTY OF DOMAIN DECOMPOSITION WITHOUT ELLIPTICITY
Mo Mu; Yun-qing Huang
2001-01-01
Partition property plays a central role in domain decomposition methods. Existing theory essentially assumes certain ellipticity. We prove the partition property for problems without ellipticity which are of practical importance. Example applications include implicit schemes applied to degenerate parabolic partial differential equations arising from superconductors, superfluids and liquid crystals. With this partition property, Schwarz algorithms can be applied to general non-elliptic problems with an h-independent optimal convergence rate. Application to the time-dependent Ginzburg-Landau model of superconductivity is illustrated and numerical results are presented.
Jucys-Murphy elements for partition algebras
Enyang, John
2010-01-01
An inductive formula is given for a family of elements which are shown to play a role in the partition algebras which is analogous to the part played by classical Jucys-Murphy elements in the symmetric group. Using Schur-Weyl duality it is shown that the aforementioned inductive definition is equivalent to the combinatorial definition given by Halverson and Ram for Jucys-Murphy elements of partition algebras. As a consequence of the inductive formula for Jucys-Murphy elements, a new presentation for partition algebras in terms of certain involutions is also derived.
Agatonovic-Kustrin, S; Loescher, Christine M; Singh, Ragini
2013-01-01
Echinacea preparations are among the most popular herbal remedies worldwide. Although it is generally assigned immune enhancement activities, the effectiveness of Echinacea is highly dependent on the Echinacea species, part of the plant used, the age of the plant, its location and the method of extraction. The aim of this study was to investigate the capacity of an artificial neural network (ANN) to analyse thin-layer chromatography (TLC) chromatograms as fingerprint patterns for quantitative estimation of three phenylpropanoid markers (chicoric acid, chlorogenic acid and echinacoside) in commercial Echinacea products. By applying samples with different weight ratios of marker compounds to the system, a database of chromatograms was constructed. One hundred and one signal intensities in each of the TLC chromatograms were correlated to the amounts of applied echinacoside, chlorogenic acid and chicoric acid using an ANN. The developed ANN correlation was used to quantify the amounts of three marker compounds in Echinacea commercial formulations. The minimum quantifiable level of 63, 154 and 98 ng and the limit of detection of 19, 46 and 29 ng were established for echinacoside, chlorogenic acid and chicoric acid respectively. A novel method for quality control of herbal products, based on TLC separation, high-resolution digital plate imaging and ANN data analysis has been developed. The method proposed can be adopted for routine evaluation of the phytochemical variability in Echinacea formulations available in the market. Copyright © 2012 John Wiley & Sons, Ltd.
Lee, Ji Yun; Kim, Chang Jong
2010-06-01
We previously reported that arctigenin, a phenylpropanoid dibenzylbutyrolactone lignan isolated from Forsythia koreana, exhibits anti-inflammatory, antioxidant, and analgesic effects in animal models. In addition, arctigenin inhibited eosinophil peroxidase and activated myeloperoxidase in inflamed tissues. In this study, we tested the effects of arctigenin on type I-IV allergic inflammation and pro-inflammatory enzymes in vitro and in vivo. Arctigenin significantly inhibited the heterologous passive cutaneous anaphylaxis induced by ovalbumin in mice at 15 mg/kg, p.o., and compound 48/80-induced histamine release from rat peritoneal mast cells at 10 microM. Arctigenin (15 mg/kg, p.o.) significantly inhibited reversed cutaneous anaphylaxis. Further, arctigenin (15 mg/kg, p.o.) significantly inhibited the Arthus reaction to sheep's red blood cells, decreasing the hemolysis titer, the hemagglutination titer, and the plaque-forming cell number for SRBCs. In addition, arctigenin significantly inhibited delayed type hypersensitivity at 15 mg/kg, p.o. and the formation of rosette-forming cells at 45 mg/kg, p.o. Contact dermatitis induced by picrylchloride and dinitrofluorobenzene was significantly (p arctigenin (0.3 mg/ear). Furthermore, arctigenin dose-dependently inhibited pro-inflammatory enzymes, such as cyclooxygenase-1 and 2, 5-lipoxygenase, phospholipase A2, and phosphodiesterase. Our results show that arctigenin significantly inhibited B- and T-cell mediated allergic inflammation as well as pro-inflammatory enzymes.
Chen, Si; Cheng, Ming-Jen; Wu, Chin-Chung; Peng, Chien-Fang; Huang, Hung-Yi; Chang, Hsun-Shuo; Wang, Chyi-Jia; Chen, Ih-Sheng
2014-05-01
Bioassay-guided fractionation of the active AcOEt-soluble fraction from the roots of Piper taiwanense has led to the isolation of two new phenylpropanoids, taiwanensols A and B (1 and 2, resp.), a new natural product, taiwanensol C (3), and 3-acetoxy-4-hydroxy-1-allylbenzene (4). The compounds were obtained as two isomer mixtures (1/2 and 3/4, resp.). Their structures were elucidated by spectroscopic analyses, including 1D- and 2D-NMR spectroscopy and mass spectrometry, and by the comparison of their NMR data with those of related compounds. Compounds 1-4 were evaluated for their antiplatelet and antitubercular activities. The mixtures 1/2 and 3/4 showed potent inhibitory activities against platelet aggregation induced by collagen, with IC50 values of 35.2 and 8.8 μM, respectively. In addition, 1/2 and 3/4 showed antitubercular activities against Mycobacterium tuberculosis H37Rv, with MIC values of 30.0 and 48.0 μg/ml, respectively.
Guo, Zhi-Yong; Li, Ping; Huang, Wen; Wang, Jian-Jun; Liu, Yu-Jing; Liu, Bo; Wang, Ye-Ling; Wu, Shi-Biao; Kennelly, Edward J; Long, Chun-Lin
2014-10-01
Eight compounds including four caffeoyl phenylpropanoid glycosides, jasnervosides A-D (1-4), one monoterpenoid glycoside, jasnervoside E (5), and three secoiridoid glycosides, jasnervosides F-H (10-12), were isolated from the stems of Jasminum nervosum Lour. (Oleaceae), along with four known compounds, poliumoside (6), verbascoside (7), α-l-rhamnopyranosyl-(1→3)-O-(α-l-rhamnopyranosyl(1→6)-1-O-E-caffeoyl-β-d-glucopyranoside (8), and jaspolyanthoside (9). Their structures were elucidated on the basis of their physicochemical and spectroscopic properties. Compounds 1, 2, 4 and 11 displayed potent antioxidant activities in the DPPH assay, while 2 and 3 displayed good activities against LPS-induced TNF-α and IL-1β production in BV2 cells. Compounds 1-5 and 10-12 were evaluated for their cytotoxic activities against three human cancer cell lines (A-549, Bel-7402, and HCT-8), but none displayed significant activity. Copyright © 2014 Elsevier Ltd. All rights reserved.
Bermejo, Paulina; Abad, María José; Díaz, Ana María; Fernández, Lidia; De Santos, Javier; Sanchez, Sandra; Villaescusa, Lucinda; Carrasco, Luis; Irurzun, Alicia
2002-02-01
As part of our screening of antiviral agents from medicinal plants, 11 compounds from plant origin (Bupleurum rigidum and Scrophularia scorodonia), three saikosaponins, seven iridoids and one phenylpropanoid glycoside were tested in vitro against herpes simplex type I (HSV-1), vesicular stomatitis virus (VSV) and poliovirus type 1. Five of these compounds showed antiviral activity against VSV. The percentages of cellular viability at the non-toxic limit concentrations of the active compounds were: verbascoside 53.6 % at 500 microg/ml, 8-acetylharpagide 32.1 % at 500 microg/ml, harpagoside 43.3 % at 450 microg/ml, scorodioside 47.8 % at 500 microg/ml and buddlejasaponin IV 56.9 % at 25 microg/ml. Although none of the saikosaponins were active against HSV-1, the iridoid scorodioside showed moderate in vitro anti-HSV-1 activity (30.6 % at 500 microg/ml). However, none of the compounds tested in this survey had any effect against poliovirus.
Jones, Andrew Maxwell Phineas; Saxena, Praveen Kumar
2013-01-01
Oxidative browning is a common and often severe problem in plant tissue culture systems caused by the accumulation and oxidation of phenolic compounds. The current study was conducted to investigate a novel preventative approach to address this problem by inhibiting the activity of the phenylalanine ammonia lyase enzyme (PAL), thereby reducing the biosynthesis of phenolic compounds. This was accomplished by incorporating 2-aminoindane-2-phosphonic acid (AIP), a competitive PAL inhibitor, into culture media of Artemisia annua as a model system. Addition of AIP into culture media resulted in significant reductions in visual tissue browning, a reduction in total phenol content, as well as absorbance and autoflourescence of tissue extracts. Reduced tissue browning was accompanied with a significant increase in growth on cytokinin based medium. Microscopic observations demonstrated that phenolic compounds accumulated in discrete cells and that these cells were more prevalent in brown tissue. These cells were highly plasmolyzed and often ruptured during examination, demonstrating a mechanism in which phenolics are released into media in this system. These data indicate that inhibiting phenylpropanoid biosynthesis with AIP is an effective approach to reduce tissue browning in A. annua. Additional experiments with Ulmus americana and Acer saccharum indicate this approach is effective in many species and it could have a wide application in systems where oxidative browning restricts the development of biotechnologies.
Taddeo, Vito Alessandro; Epifano, Francesco; Fiorito, Serena; Genovese, Salvatore
2016-09-10
In this paper the presence of selected prenylated and unprenylated phenylpropanoids, namely ferulic acid 1, boropinic acid 2, 4'-geranyloxyferulic acid 3, umbelliferone 4, 7-isopentenyloxycoumarin 5, and auraptene 6, have been determined in Italian raw propolis after having been extracted with different methodologies. An aqueous solution of β-cyclodextrin was the best extraction method for ferulic acid 1, treatment with indifferently EtOH or aqueous β-cyclodextrin were the most effective one for umbelliferone 4, boropinic acid 2 gave the best yields either with H2O/β-cyclodextrin or olive oil treatment or in biphasic systems, maceration with biphasic mixtures of aqueous β-cyclodextrin and olive oil was seen to be the most effective procedure for 7-isopentenyloxycoumarin 5, the only method providing significant quantities of 4'-geranyloxyferulic acid 3 was the maceration of raw propolis with olive oil, and finally auraptene 4 was best extracted with absolute EtOH. "Classic" maceration in general performed better than ultrasound-assisted one.
Achnine, Lahoucine; Blancaflor, Elison B; Rasmussen, Susanne; Dixon, Richard A
2004-11-01
Metabolic channeling has been proposed to occur at the entry point into plant phenylpropanoid biosynthesis. To determine whether isoforms of L-Phe ammonia-lyase (PAL), the first enzyme in the pathway, can associate with the next enzyme, the endomembrane-bound cinnamate 4-hydroxylase (C4H), to facilitate channeling, we generated transgenic tobacco (Nicotiana tabacum) plants independently expressing epitope-tagged versions of two PAL isoforms (PAL1 and PAL2) and C4H. Subcellular fractionation and protein gel blot analysis using epitope- and PAL isoform-specific antibodies indicated both microsomal and cytosolic locations of PAL1 but only cytosolic localization of PAL2. However, both PAL isoforms were microsomally localized in plants overexpressing C4H. These results, which suggest that C4H itself may organize the complex for membrane association of PAL, were confirmed using PAL-green fluorescent protein (GFP) fusions with localization by confocal microscopy. Coexpression of unlabeled PAL1 with PAL2-GFP resulted in a shift of fluorescence localization from endomembranes to cytosol in C4H overexpressing plants, whereas coexpression of unlabeled PAL2 with PAL1-GFP did not affect PAL1-GFP localization, indicating that PAL1 has a higher affinity for its membrane localization site than does PAL2. Dual-labeling immunofluorescence and fluorescence energy resonance transfer (FRET) studies confirmed colocalization of PAL and C4H. However, FRET analysis with acceptor photobleaching suggested that the colocalization was not tight.
Reducing variance in batch partitioning measurements
Mariner, Paul E.
2010-08-11
The partitioning experiment is commonly performed with little or no attention to reducing measurement variance. Batch test procedures such as those used to measure K{sub d} values (e.g., ASTM D 4646 and EPA402 -R-99-004A) do not explain how to evaluate measurement uncertainty nor how to minimize measurement variance. In fact, ASTM D 4646 prescribes a sorbent:water ratio that prevents variance minimization. Consequently, the variance of a set of partitioning measurements can be extreme and even absurd. Such data sets, which are commonplace, hamper probabilistic modeling efforts. An error-savvy design requires adjustment of the solution:sorbent ratio so that approximately half of the sorbate partitions to the sorbent. Results of Monte Carlo simulations indicate that this simple step can markedly improve the precision and statistical characterization of partitioning uncertainty.
OPTIMAL PARTITIONS OF DATA IN HIGHER DIMENSIONS
National Aeronautics and Space Administration — OPTIMAL PARTITIONS OF DATA IN HIGHER DIMENSIONS BRADLEY W. JACKSON*, JEFFREY D. SCARGLE, AND CHRIS CUSANZA, DAVID BARNES, DENNIS KANYGIN, RUSSELL SARMIENTO, SOWMYA...
Connections between groundwater flow and transpiration partitioning
Maxwell, Reed M.; Condon, Laura E.
2016-07-01
Understanding freshwater fluxes at continental scales will help us better predict hydrologic response and manage our terrestrial water resources. The partitioning of evapotranspiration into bare soil evaporation and plant transpiration remains a key uncertainty in the terrestrial water balance. We used integrated hydrologic simulations that couple vegetation and land-energy processes with surface and subsurface hydrology to study transpiration partitioning at the continental scale. Both latent heat flux and partitioning are connected to water table depth, and including lateral groundwater flow in the model increases transpiration partitioning from 47 ± 13 to 62 ± 12%. This suggests that lateral groundwater flow, which is generally simplified or excluded in Earth system models, may provide a missing link for reconciling observations and global models of terrestrial water fluxes.
Spatially Partitioned Embedded Runge--Kutta Methods
Ketcheson, David I.
2013-10-30
We study spatially partitioned embedded Runge--Kutta (SPERK) schemes for partial differential equations (PDEs), in which each of the component schemes is applied over a different part of the spatial domain. Such methods may be convenient for problems in which the smoothness of the solution or the magnitudes of the PDE coefficients vary strongly in space. We focus on embedded partitioned methods as they offer greater efficiency and avoid the order reduction that may occur in nonembedded schemes. We demonstrate that the lack of conservation in partitioned schemes can lead to nonphysical effects and propose conservative additive schemes based on partitioning the fluxes rather than the ordinary differential equations. A variety of SPERK schemes are presented, including an embedded pair suitable for the time evolution of fifth-order weighted nonoscillatory spatial discretizations. Numerical experiments are provided to support the theory.
Generating Milton Babbitt's all-partition arrays
Bemman, Brian; Meredith, David
2016-01-01
by this algorithm to generate the specific all-partition arrays used in three of Babbitt’s works. Finally, we evaluate the algorithm and the heuristics in terms of how well they predict the sequences of integer partitions used in two of Babbitt’s works. We also explore the effect of the heuristics...... on the performance of the algorithm when it is used in an attempt to generate a novel array....
Perturbative partition function for squashed S^5
Imamura, Yosuke
2012-01-01
We compute the index of 6d N=(1,0) theories on S^5xR containing vector and hypermultiplets. We only consider the perturbative sector without instantons. By compactifying R to S^1 with a twisted boundary condition and taking the small radius limit, we derive the perturbative partition function on a squashed S^5. The 1-loop partition function is represented in a simple form with the triple sine function.
Congruences involving F-partition functions
James Sellers
1994-01-01
Full Text Available The primary goal of this note is to prove the congruence ϕ3(3n+2≡0(mod3, where ϕ3(n denotes the number of F-partitions of n with at most 3 repetitions. Secondarily, we conjecture a new family of congruences involving cϕ2(n, the number of F-partitions of n with 2 colors.
Actinide and fission product partitioning and transmutation
NONE
1997-07-01
The fourth international information exchange meeting on actinide and fission product partitioning and transmutation, took place in Mito City in Japan, on 111-13 September 1996. The proceedings are presented in six sessions: the major programmes and international cooperation, the partitioning and transmutation programs, feasibility studies, particular separation processes, the accelerator driven transmutation, and the chemistry of the fuel cycle. (A.L.B.)
A Gray path on binary partitions
Colthurst, Thomas
2009-01-01
A binary partition of a positive integer $n$ is a partition of $n$ in which each part has size a power of two. In this note we first construct a Gray sequence on the set of binary partitions of $n$. This is an ordering of the set of binary partitions of each $n$ (or of all $n$) such that adjacent partitions differ by one of a small set of elementary transformations; here the allowed transformatios are replacing $2^k+2^k$ by $2^{k+1}$ or vice versa (or addition of a new +1). Next we give a purely local condition for finding the successor of any partition in this sequence; the rule is so simple that successive transitions can be performed in constant time. Finally we show how to compute directly the bijection between $k$ and the $k$th term in the sequence. This answers a question posed by Donald Knuth in section 7.2.1 of The Art of Computer Programming.
Certificate Revocation Using Fine Grained Certificate Space Partitioning
Goyal, Vipul
A new certificate revocation system is presented. The basic idea is to divide the certificate space into several partitions, the number of partitions being dependent on the PKI environment. Each partition contains the status of a set of certificates. A partition may either expire or be renewed at the end of a time slot. This is done efficiently using hash chains.
Kok-Keong Loke
2017-02-01
Full Text Available Background Polygonum minus is an herbal plant in the Polygonaceae family which is rich in ethnomedicinal plants. The chemical composition and characteristic pungent fragrance of Polygonum minus have been extensively studied due to its culinary and medicinal properties. There are only a few transcriptome sequences available for species from this important family of medicinal plants. The limited genetic information from the public expressed sequences tag (EST library hinders further study on molecular mechanisms underlying secondary metabolite production. Methods In this study, we performed a hybrid assembly of 454 and Illumina sequencing reads from Polygonum minus root and leaf tissues, respectively, to generate a combined transcriptome library as a reference. Results A total of 34.37 million filtered and normalized reads were assembled into 188,735 transcripts with a total length of 136.67 Mbp. We performed a similarity search against all the publicly available genome sequences and found similarity matches for 163,200 (86.5% of Polygonum minus transcripts, largely from Arabidopsis thaliana (58.9%. Transcript abundance in the leaf and root tissues were estimated and validated through RT-qPCR of seven selected transcripts involved in the biosynthesis of phenylpropanoids and flavonoids. All the transcripts were annotated against KEGG pathways to profile transcripts related to the biosynthesis of secondary metabolites. Discussion This comprehensive transcriptome profile will serve as a useful sequence resource for molecular genetics and evolutionary research on secondary metabolite biosynthesis in Polygonaceae family. Transcriptome assembly of Polygonum minus can be accessed at http://prims.researchfrontier.org/index.php/dataset/transcriptome.
Loke, Kok-Keong; Rahnamaie-Tajadod, Reyhaneh; Yeoh, Chean-Chean; Mohamed-Hussein, Zeti-Azura; Zainal, Zamri; Ismail, Ismanizan; Mohd Noor, Normah
2017-01-01
Background Polygonum minus is an herbal plant in the Polygonaceae family which is rich in ethnomedicinal plants. The chemical composition and characteristic pungent fragrance of Polygonum minus have been extensively studied due to its culinary and medicinal properties. There are only a few transcriptome sequences available for species from this important family of medicinal plants. The limited genetic information from the public expressed sequences tag (EST) library hinders further study on molecular mechanisms underlying secondary metabolite production. Methods In this study, we performed a hybrid assembly of 454 and Illumina sequencing reads from Polygonum minus root and leaf tissues, respectively, to generate a combined transcriptome library as a reference. Results A total of 34.37 million filtered and normalized reads were assembled into 188,735 transcripts with a total length of 136.67 Mbp. We performed a similarity search against all the publicly available genome sequences and found similarity matches for 163,200 (86.5%) of Polygonum minus transcripts, largely from Arabidopsis thaliana (58.9%). Transcript abundance in the leaf and root tissues were estimated and validated through RT-qPCR of seven selected transcripts involved in the biosynthesis of phenylpropanoids and flavonoids. All the transcripts were annotated against KEGG pathways to profile transcripts related to the biosynthesis of secondary metabolites. Discussion This comprehensive transcriptome profile will serve as a useful sequence resource for molecular genetics and evolutionary research on secondary metabolite biosynthesis in Polygonaceae family. Transcriptome assembly of Polygonum minus can be accessed at http://prims.researchfrontier.org/index.php/dataset/transcriptome. PMID:28265493
Soler, Marçal; Plasencia, Anna; Lepikson-Neto, Jorge; Camargo, Eduardo L. O.; Dupas, Annabelle; Ladouce, Nathalie; Pesquet, Edouard; Mounet, Fabien; Larbat, Romain; Grima-Pettenati, Jacqueline
2016-01-01
Comparative phylogenetic analyses of the R2R3-MYB transcription factor family revealed that five subgroups were preferentially found in woody species and were totally absent from Brassicaceae and monocots (Soler et al., 2015). Here, we analyzed one of these subgroups (WPS-I) for which no gene had been yet characterized. Most Eucalyptus members of WPS-I are preferentially expressed in the vascular cambium, the secondary meristem responsible for tree radial growth. We focused on EgMYB88, which is the most specifically and highly expressed in vascular tissues, and showed that it behaves as a transcriptional activator in yeast. Then, we functionally characterized EgMYB88 in both transgenic Arabidopsis and poplar plants overexpressing either the native or the dominant repression form (fused to the Ethylene-responsive element binding factor-associated Amphiphilic Repression motif, EAR). The transgenic Arabidopsis lines had no phenotype whereas the poplar lines overexpressing EgMYB88 exhibited a substantial increase in the levels of the flavonoid catechin and of some salicinoid phenolic glycosides (salicortin, salireposide, and tremulacin), in agreement with the increase of the transcript levels of landmark biosynthetic genes. A change in the lignin structure (increase in the syringyl vs. guaiacyl, S/G ratio) was also observed. Poplar lines overexpressing the EgMYB88 dominant repression form did not show a strict opposite phenotype. The level of catechin was reduced, but the levels of the salicinoid phenolic glycosides and the S/G ratio remained unchanged. In addition, they showed a reduction in soluble oligolignols containing sinapyl p-hydroxybenzoate accompanied by a mild reduction of the insoluble lignin content. Altogether, these results suggest that EgMYB88, and more largely members of the WPS-I group, could control in cambium and in the first layers of differentiating xylem the biosynthesis of some phenylpropanoid-derived secondary metabolites including lignin. PMID
Jeong, Yu Jeong; An, Chul Han; Woo, Su Gyeong; Park, Ji Hye; Lee, Ki-Won; Lee, Sang-Hoon; Rim, Yeonggil; Jeong, Hyung Jae; Ryu, Young Bae; Kim, Cha Young
2016-09-01
The biosynthesis of flavonoids such as anthocyanin and stilbenes has attracted increasing attention because of their potential health benefits. Anthocyanins and stilbenes share common phenylpropanoid precursor pathways. We previously reported that the overexpression of sweetpotato IbMYB1a induced anthocyanin pigmentation in transgenic tobacco (Nicotiana tabacum) plants. In the present study, transgenic tobacco (Nicotiana tabacum SR1) plants (STS-OX and ROST-OX) expressing the RpSTS gene encoding stilbene synthase from rhubarb (Rheum palmatum L. cv. Jangyeop) and the RpSTS and VrROMT genes encoding resveratrol O-methyltransferase from frost grape (Vitis riparia) were generated under the control of 35S promoter. Phenotypic alterations in floral organs, such as a reduction in floral pigments and male sterility, were observed in STS-OX transgenic tobacco plants. However, we failed to obtain STS-OX and ROST-OX plants with high levels of resveratrol compounds. Therefore, to improve the production of resveratrol derivatives in plants, we cross-pollinated flowers of STS-OX or ROST-OX and IbMYB1a-OX transgenic lines (SM and RSM). Phenotypic changes in vegetative and reproductive development of SM and RSM plants were observed. Furthermore, by HPLC and LC-MS analyses, we found enhanced production of resveratrol derivatives such as piceid, piceid methyl ether, resveratrol methyl ether O-hexoside, and 5-methyl resveratrol-3,4'-O-β-D-diglucopyranoside in SM and RSM cross-pollinated lines. Here, total contents of trans- and cis-piceids ranged from approximately 104-240 µg/g fresh weight in SM (F2). Collectively, we suggest that coexpression of RpSTS and IbMYB1a via cross-pollination can induce enhanced production of resveratrol compounds in plants by increasing metabolic flux into stilbenoid biosynthesis.
Govender, Nisha T; Mahmood, Maziah; Seman, Idris A; Wong, Mui-Yun
2017-01-01
Basal stem rot, caused by the basidiomycete fungus, Ganoderma boninense, is an economically devastating disease in Malaysia. Our study investigated the changes in lignin content and composition along with activity and expression of the phenylpropanoid pathway enzymes and genes in oil palm root tissues during G. boninense infection. We sampled control (non-inoculated) and infected (inoculated) seedlings at seven time points [1, 2, 3, 4, 8, and 12 weeks post-inoculation (wpi)] in a randomized design. The expression profiles of phenylalanine ammonia lyase (PAL), cinnamyl alcohol dehydrogenase (CAD), and peroxidase (POD) genes were monitored at 1, 2, and 3 wpi using real-time quantitative polymerase chain reaction. Seedlings at 4, 8, and 12 wpi were screened for lignin content, lignin composition, enzyme activities (PAL, CAD, and POD), growth (weight and height), and disease severity (DS). Gene expression analysis demonstrated up-regulation of PAL, CAD, and POD genes in the infected seedlings, relative to the control seedlings at 1, 2, and 3 wpi. At 2 and 3 wpi, CAD showed highest transcript levels compared to PAL and POD. DS increased progressively throughout sampling, with 5, 34, and 69% at 4, 8, and 12 wpi, respectively. Fresh weight and height of the infected seedlings were significantly lower compared to the control seedlings at 8 and 12 wpi. Lignin content of the infected seedlings at 4 wpi was significantly higher than the control seedlings, remained elicited with no change at 8 wpi, and then collapsed with a significant reduction at 12 wpi. The nitrobenzene oxidation products of oil palm root lignin yielded both syringyl and guaiacyl monomers. Accumulation of lignin in the infected seedlings was in parallel to increased syringyl monomers, at 4 and 8 wpi. The activities of PAL and CAD enzymes in the infected seedlings at DS = 5-34% were significantly higher than the control seedlings and thereafter collapsed at DS = 69%.
Nisha T. Govender
2017-08-01
Full Text Available Basal stem rot, caused by the basidiomycete fungus, Ganoderma boninense, is an economically devastating disease in Malaysia. Our study investigated the changes in lignin content and composition along with activity and expression of the phenylpropanoid pathway enzymes and genes in oil palm root tissues during G. boninense infection. We sampled control (non-inoculated and infected (inoculated seedlings at seven time points [1, 2, 3, 4, 8, and 12 weeks post-inoculation (wpi] in a randomized design. The expression profiles of phenylalanine ammonia lyase (PAL, cinnamyl alcohol dehydrogenase (CAD, and peroxidase (POD genes were monitored at 1, 2, and 3 wpi using real-time quantitative polymerase chain reaction. Seedlings at 4, 8, and 12 wpi were screened for lignin content, lignin composition, enzyme activities (PAL, CAD, and POD, growth (weight and height, and disease severity (DS. Gene expression analysis demonstrated up-regulation of PAL, CAD, and POD genes in the infected seedlings, relative to the control seedlings at 1, 2, and 3 wpi. At 2 and 3 wpi, CAD showed highest transcript levels compared to PAL and POD. DS increased progressively throughout sampling, with 5, 34, and 69% at 4, 8, and 12 wpi, respectively. Fresh weight and height of the infected seedlings were significantly lower compared to the control seedlings at 8 and 12 wpi. Lignin content of the infected seedlings at 4 wpi was significantly higher than the control seedlings, remained elicited with no change at 8 wpi, and then collapsed with a significant reduction at 12 wpi. The nitrobenzene oxidation products of oil palm root lignin yielded both syringyl and guaiacyl monomers. Accumulation of lignin in the infected seedlings was in parallel to increased syringyl monomers, at 4 and 8 wpi. The activities of PAL and CAD enzymes in the infected seedlings at DS = 5–34% were significantly higher than the control seedlings and thereafter collapsed at DS = 69%.
Lehka, Beata Joanna; Eichenberger, Michael; Bjorn-Yoshimoto, Walden Emil
2016-01-01
Phenylpropanoids, such as flavonoids and stilbenoids, are of great commercial interest, and their production in Saccharomyces cerevisiae is a very promising strategy. However, to achieve commercially viable production, each step of the process must be optimised. We looked at carbon loss, known...... to occur in the heterologous flavonoid pathway in yeast, and identified an endogenous enzyme, the enoyl reductase Tsc13, which turned out to be responsible for the accumulation of phloretic acid via reduction of p-coumaroyl-CoA. Tsc13 is an essential enzyme involved in fatty acid synthesis and cannot...
A biologically motivated partitioning of mortality.
Carnes, B. A.; Olshansky, S. J.; Center for Mechanistic Biology and Biotechnology; Univ. of Chicago
1997-01-01
For over a century, actuaries and biologists working independently of each other have presented arguments for why total mortality needs to be partitioned into biologically meaningful subcomponents. These mortality partitions tended to overlook genetic diseases that are inherited because the partitions were motivated by a paradigm focused on aging. In this article, we combine and extend the concepts from these disciplines to develop a conceptual partitioning of total mortality into extrinsic and intrinsic causes of death. An extrinsic death is either caused or initiated by something that originates outside the body of an individual, while an intrinsic death is either caused or initiated by processes that originate within the body. It is argued that extrinsic mortality has been a driving force in determining why we die when we do from intrinsic causes of death. This biologically motivated partitioning of mortality provides a useful perspective for researchers interested in comparative mortality analyses, the consequences of population aging, limits to human life expectancy, the progress made by the biomedical sciences against lethal diseases, and demographic models that predict the life expectancy of future populations.
Computational prediction of solubilizers' effect on partitioning.
Hoest, Jan; Christensen, Inge T; Jørgensen, Flemming S; Hovgaard, Lars; Frokjaer, Sven
2007-02-01
A computational model for the prediction of solubilizers' effect on drug partitioning has been developed. Membrane/water partitioning was evaluated by means of immobilized artificial membrane (IAM) chromatography. Four solubilizers were used to alter the partitioning in the IAM column. Two types of molecular descriptors were calculated: 2D descriptors using the MOE software and 3D descriptors using the Volsurf software. Structure-property relationships between each of the two types of descriptors and partitioning were established using partial least squares, projection to latent structures (PLS) statistics. Statistically significant relationships between the molecular descriptors and the IAM data were identified. Based on the 2D descriptors structure-property relationships R(2)Y=0. 99 and Q(2)=0.82-0.83 were obtained for some of the solubilizers. The most important descriptor was related to logP. For the Volsurf 3D descriptors models with R(2)Y=0.53-0.64 and Q(2)=0.40-0.54 were obtained using five descriptors. The present study showed that it is possible to predict partitioning of substances in an artificial phospholipid membrane, with or without the use of solubilizers.
PARTITIONING A GRAPH INTO MONOPOLY SETS
AHMED MOHAMMED NAJI
2017-06-01
Full Text Available In a graph G = (V, E, a subset M of V (G is said to be a monopoly set of G if every vertex v ∈ V - M has, at least, d(v/ 2 neighbors in M. The monopoly size of G, denoted by mo(G, is the minimum cardinality of a monopoly set. In this paper, we study the problem of partitioning V (G into monopoly sets. An M-partition of a graph G is the partition of V (G into k disjoint monopoly sets. The monatic number of G, denoted by μ(G, is the maximum number of sets in M-partition of G. It is shown that 2 ≤ μ(G ≤ 3 for every graph G without isolated vertices. The properties of each monopoly partite set of G are presented. Moreover, the properties of all graphs G having μ(G = 3, are presented. It is shown that every graph G having μ(G = 3 is Eulerian and have χ (G ≤ 3. Finally, it is shown that for every integer k which is different from {1, 2, 4}, there exists a graph G of order n = k having μ(G = 3.
Screening of pesticides for environmental partitioning tendency.
Gramatica, Paola; Di Guardo, Antonio
2002-06-01
The partitioning tendency of chemicals, in this study pesticides in particular, into different environmental compartments depends mainly on the concurrent relevance of the physico-chemical properties of the chemical itself. To rank the pesticides according to their distribution tendencies in the different environmental compartments we propose a multivariate approach: the combination, by principal component analysis, of those physico-chemical properties like organic carbon partition coefficient (Koc), n-octanol/water partition coefficient (Kow), water solubility (Sw), vapour pressure and Henry's law constant (H) that are more relevant to the determination of environmental partitioning. The resultant macrovariables, the PC1 and PC2 scores here named leaching index (LIN) and volatality index (VIN), are proposed as preliminary environmental partitioning indexes in different media. These two indexes are modeled by theoretical molecular descriptors with satisfactory predictive power. Such an approach allows a rapid pre-determination and screening of the environmental distribution of pesticides starting only from the molecular structure of the pesticide, without any a priori knowledge of the physico-chemical properties.
Harding, Scott, A; Tsai, Chung-jui; Lindroth, Richard, L
2013-03-24
conserved. Overall phenylpropanoid composition exhibited changes due to large effects on phenolic glycosides containing a salicin moiety. There were no effects on lignin content. Efforts to publish this work continue, and depend on additional data which we are still collecting. This ongoing work is expected to strengthen our most provocative metabolic profiling data which suggests as yet unreported links controlling the balance between the two major leaf phenylpropanoid sinks, the CTs and the salicin-PGs. Objective 2: Ontogenic effects on leaf CT accrual and phenylpropanoid complexity (Objective 2) have been reported in the past and we contributed two manuscripts on how phenylpropanoid sinks in roots and stems could have an increasing effect on leaf CT as plants grow larger and plant proportions of stem, root and leaf change. Tsai C.-J., El Kayal W., Harding S.A. (2006) Populus, the new model system for investigating phenylpropanoid complexity. International Journal of Applied Science and Engineering 4: 221-233. We presented evidence that flavonoid precursors of CT rapidly decline in roots under conditions that favor CT accrual in leaves. Harding SA, Jarvie MM, Lindroth RL, Tsai C-J (2009) A comparative analysis of phenylpropanoid metabolism, N utilization and carbon partitioning in fast- and slow-growing Populus hybrid clones. Journal of Experimental Botany. 60:3443-3452. We presented evidence that nitrogen delivery to leaves as a fraction of nitrogen taken up by the roots is lower in high leaf CT genotypes. We presented a hypothesis from our data that N was sequestered in proportion to lignin content in stem tissues. Low leaf N content and high leaf CT in genotypes with high stem lignin was posited to be a systemic outcome of N demand in lignifiying stem tissues. Thereby, stem lignin and leaf CT accrual might be systemically linked, placing control of leaf phenylpropanoids under systemic rather than solely organ specific determinants. Analyses of total structural and non
Acyl-CoA metabolism and partitioning
Grevengoed, Trisha J; Klett, Eric L; Coleman, Rosalind A
2014-01-01
expression patterns and subcellular locations. Their acyl-CoA products regulate metabolic enzymes and signaling pathways, become oxidized to provide cellular energy, and are incorporated into acylated proteins and complex lipids such as triacylglycerol, phospholipids, and cholesterol esters. Their differing...... metabolic fates are determined by a network of proteins that channel the acyl-CoAs toward or away from specific metabolic pathways and serve as the basis for partitioning. This review evaluates the evidence for acyl-CoA partitioning by reviewing experimental data on proteins that are believed to contribute...... to acyl-CoA channeling, the metabolic consequences of loss of these proteins, and the potential role of maladaptive acyl-CoA partitioning in the pathogenesis of metabolic disease and carcinogenesis....
Partitioning a macroscopic system into independent subsystems
Delle Site, Luigi; Ciccotti, Giovanni; Hartmann, Carsten
2017-08-01
We discuss the problem of partitioning a macroscopic system into a collection of independent subsystems. The partitioning of a system into replica-like subsystems is nowadays a subject of major interest in several fields of theoretical and applied physics. The thermodynamic approach currently favoured by practitioners is based on a phenomenological definition of an interface energy associated with the partition, due to a lack of easily computable expressions for a microscopic (i.e. particle-based) interface energy. In this article, we outline a general approach to derive sharp and computable bounds for the interface free energy in terms of microscopic statistical quantities. We discuss potential applications in nanothermodynamics and outline possible future directions.
Combinatorics and complexity of partition functions
Barvinok, Alexander
2016-01-01
Partition functions arise in combinatorics and related problems of statistical physics as they encode in a succinct way the combinatorial structure of complicated systems. The main focus of the book is on efficient ways to compute (approximate) various partition functions, such as permanents, hafnians and their higher-dimensional versions, graph and hypergraph matching polynomials, the independence polynomial of a graph and partition functions enumerating 0-1 and integer points in polyhedra, which allows one to make algorithmic advances in otherwise intractable problems. The book unifies various, often quite recent, results scattered in the literature, concentrating on the three main approaches: scaling, interpolation and correlation decay. The prerequisites include moderate amounts of real and complex analysis and linear algebra, making the book accessible to advanced math and physics undergraduates. .
Partition functions and graphs: A combinatorial approach
Solomon, A I; Duchamp, G; Horzela, A; Penson, K A; Solomon, Allan I.; Blasiak, Pawel; Duchamp, Gerard; Horzela, Andrzej; Penson, Karol A.
2004-01-01
Although symmetry methods and analysis are a necessary ingredient in every physicist's toolkit, rather less use has been made of combinatorial methods. One exception is in the realm of Statistical Physics, where the calculation of the partition function, for example, is essentially a combinatorial problem. In this talk we shall show that one approach is via the normal ordering of the second quantized operators appearing in the partition function. This in turn leads to a combinatorial graphical description, giving essentially Feynman-type graphs associated with the theory. We illustrate this methodology by the explicit calculation of two model examples, the free boson gas and a superfluid boson model. We show how the calculation of partition functions can be facilitated by knowledge of the combinatorics of the boson normal ordering problem; this naturally gives rise to the Bell numbers of combinatorics. The associated graphical representation of these numbers gives a perturbation expansion in terms of a sequen...
Parallel Graph Partitioning for Complex Networks
Meyerhenke, Henning; Schulz, Christian
2014-01-01
Processing large complex networks like social networks or web graphs has recently attracted considerable interest. In order to do this in parallel, we need to partition them into pieces of about equal size. Unfortunately, previous parallel graph partitioners originally developed for more regular mesh-like networks do not work well for these networks. This paper addresses this problem by parallelizing and adapting the label propagation technique originally developed for graph clustering. By introducing size constraints, label propagation becomes applicable for both the coarsening and the refinement phase of multilevel graph partitioning. We obtain very high quality by applying a highly parallel evolutionary algorithm to the coarsened graph. The resulting system is both more scalable and achieves higher quality than state-of-the-art systems like ParMetis or PT-Scotch. For large complex networks the performance differences are very big. For example, our algorithm can partition a web graph with 3.3 billion edges ...
Partitioning of selected antioxidants in mayonnaise
Jacobsen, Charlotte; Schwarz, K.; Stockmann, H.
1999-01-01
This study examined partitioning of alpha-, beta-, and gamma- tocopherol and six polar antioxidants (Trolox, ferulic acid, caffeic acid, propyl gallate, gallic acid, and catechin) in mayonnaise. Partitioning of antioxidants between different phases was determined after separation of mayonnaise...... by either (a) centrifugation + ultracentrifugation or (b) centrifugation + dialysis. Antioxidants partitioned in accordance with their chemical structure and polarity: Tocopherols were concentrated in the oil phase (93-96%), while the proportion of polar antioxidants in the oil phase ranged from 0% (gallic...... acid and catechin) to 83% (Trolox). Accordingly, proportions of 6% (Trolox) to 80% (gallic acid and catechin) were found in the aqueous phase. Similar trends were observed after dialysis. After ultracentrifugation, large proportions of polar antioxidants were found in the "emulsion phase...
Program Partitioning using Dynamic Trust Models
Søndergaard, Dan; Probst, Christian W.; Jensen, Christian D.;
2006-01-01
-based scenarios. Language-based technologies have been suggested to support developers of those applications---the \\$\\backslash\\$emph{Decentralized Label Model} and \\$\\backslash\\$emph{Secure Program Partitioning} allow to annotate programs with security specifications, and to partition the annotated program...... across a set of hosts, obeying both the annotations and the trust relation between the principals. The resulting applications guarantee \\$\\backslash\\$emph{by construction} that safety and confidentiality of both data and computations are ensured. In this work, we develop a generalised version...
Partitioning and transmutation. Annual Report 1997
Enarsson, Aa.; Landgren, A.; Liljenzin, J.O.; Skaalberg, M.; Spjuth, L. [Chalmers Univ. of Technology, Goeteborg (Sweden). Dept. of Nuclear Chemistry
1997-12-01
The current research project on partitioning and transmutation at the Dept. of Nuclear Chemistry, CTH, has the primary objective to investigate separation processes useful in connection with transmutation of long-lived radionuclides in high level nuclear waste. Partitioning is necessary in order to recover and purify the elements before and after each irradiation in a P and T treatment. In order to achieve a high transmutation efficiency the chemical separation process used must have small losses to various waste streams. At present, only aqueous based separation processes are known to be able to achieve the high recovery and separation efficiencies necessary for a useful P and T process. Refs, figs, tabs.
Advanced Coarsening Schemes for Graph Partitioning
Safro, Ilya; Schulz, Christian
2012-01-01
The graph partitioning problem is widely used and studied in many practical and theoretical applications. The multilevel strategies represent today one of the most effective and efficient generic frameworks for solving this problem on large-scale graphs. Most of the attention in designing the multilevel partitioning frameworks has been on the refinement phase. In this work we focus on the coarsening phase, which is responsible for creating structurally similar to the original but smaller graphs. We compare different matching- and AMG-based coarsening schemes, experiment with the algebraic distance between nodes, and demonstrate computational results on several classes of graphs that emphasize the running time and quality advantages of different coarsenings.
Cochlear implant in incomplete partition type I.
Berrettini, S; Forli, F; De Vito, A; Bruschini, L; Quaranta, N
2013-02-01
In this investigation, we report on 4 patients affected by incomplete partition type I submitted to cochlear implant at our institutions. Preoperative, surgical, mapping and follow-up issues as well as results in cases with this complex malformation are described. The cases reported in the present study confirm that cochlear implantation in patients with incomplete partition type I may be challenging for cochlear implant teams. The results are variable, but in many cases satisfactory, and are mainly related to the surgical placement of the electrode and residual neural nerve fibres. Moreover, in some cases the association of cochlear nerve abnormalities and other disabilities may significantly affect results.
Yan Zhang
Full Text Available Pinoresinol diglucoside (PDG and pinoresinol (Pin are normally produced by plant cells via the phenylpropanoid pathway. This study reveals the existence of a related pathway in Phomopsis sp. XP-8, a PDG-producing fungal strain isolated from the bark of the Tu-chung tree (Eucommiaulmoides Oliv.. After addition of 0.15 g/L glucose to Phomopsis sp. XP-8, PDG and Pin formed when phenylalanine, tyrosine, leucine, cinnamic acid, and p-coumaric acid were used as the substrates respectively. No PDG formed in the absence of glucose, but Pin was detected after addition of all these substrates except leucine. In all systems in the presence of glucose, production of PDG and/or Pin and the accumulation of phenylalanine, cinnamic acid, or p-coumaric acid correlated directly with added substrate in a time- and substrate concentration- dependent manner. After analysis of products produced after addition of each substrate, the mass flow sequence for PDG and Pin biosynthesis was defined as: glucose to phenylalanine, phenylalanine to cinnamic acid, then to p-coumaric acid, and finally to Pin or PDG. During the bioconversion, the activities of four key enzymes in the phenylpropanoid pathway were also determined and correlated with accumulation of their corresponding products. PDG production by Phomopsis sp. exhibits greater efficiency and cost effectiveness than the currently-used plant-based system and will pave the way for large scale production of PDG and/or Pin for medical applications.
Zhang, Yan; Shi, Junling; Liu, Laping; Gao, Zhenhong; Che, Jinxin; Shao, Dongyan; Liu, Yanlin
2015-01-01
Pinoresinol diglucoside (PDG) and pinoresinol (Pin) are normally produced by plant cells via the phenylpropanoid pathway. This study reveals the existence of a related pathway in Phomopsis sp. XP-8, a PDG-producing fungal strain isolated from the bark of the Tu-chung tree (Eucommiaulmoides Oliv.). After addition of 0.15 g/L glucose to Phomopsis sp. XP-8, PDG and Pin formed when phenylalanine, tyrosine, leucine, cinnamic acid, and p-coumaric acid were used as the substrates respectively. No PDG formed in the absence of glucose, but Pin was detected after addition of all these substrates except leucine. In all systems in the presence of glucose, production of PDG and/or Pin and the accumulation of phenylalanine, cinnamic acid, or p-coumaric acid correlated directly with added substrate in a time- and substrate concentration- dependent manner. After analysis of products produced after addition of each substrate, the mass flow sequence for PDG and Pin biosynthesis was defined as: glucose to phenylalanine, phenylalanine to cinnamic acid, then to p-coumaric acid, and finally to Pin or PDG. During the bioconversion, the activities of four key enzymes in the phenylpropanoid pathway were also determined and correlated with accumulation of their corresponding products. PDG production by Phomopsis sp. exhibits greater efficiency and cost effectiveness than the currently-used plant-based system and will pave the way for large scale production of PDG and/or Pin for medical applications.
Kamalipourazad, Maryam; Sharifi, Mohsen; Maivan, Hassan Zare; Behmanesh, Mehrdad; Chashmi, Najmeh Ahmadian
2016-10-01
Manipulation of cell culture media by elicitors is one of most important strategies to inducing secondary metabolism for the production of valuable metabolites. In this investigation, inducing effect of chitosan on physiological, biochemical, and molecular parameters were investigated in cell suspension cultures of Scrophularia striata Boiss. The results showed that chitosan concentration and time of elicitation are determinants of the effectiveness of the elicitor. Accumulation of aromatic amino acids (phenylalanine [Phe] and tyrosine [Tyr]), phenylpropanoid compounds (phenolic acids [PAs] and echinacoside [ECH]), hydrogen peroxide (H2O2) production, phenylalanine ammonia-lyase (PAL) activity and gene expression, and antioxidant enzymes (superoxide dismutase [SOD], peroxidase [POX], catalase [CAT]) activities were altered by changing the exposure time of elicitation. Results showed that, upon elicitation with chitosan, oxidative events were induced, antioxidant responses of S. striata cells were boosted through enhanced activity of an effective series of scavenging enzymes (SOD, CAT, and POX), and biosynthesis of non-enzymatic antioxidants (ECH and PAs [cinnamic, p-coumaric and, caffeic acids]). The increase in amino acid content and PAL activity at early days of exposure to chitosan was related with rises in phenolic compounds. These results provide evidence that chitosan by up-regulation of PAL gene differentially improves the production of phenylpropanoid compounds, which are of medical commercial value with good biotechnological prospects.
Takshak, Swabha; Agrawal, S B
2014-11-01
The present study aims to investigate the effects of supplemental ultraviolet B (3.6 kJ m(-2)day(-1) above ambient) radiation on secondary metabolites and phenylpropanoid pathway enzymes of Withania somnifera under field conditions at 40, 70, and 100 days after transplantation. Secondary metabolites' (alkaloids, anthocyanins, carotenoids, flavonoids, lignin, phytosterols, saponins, and tannins) concentrations were analysed at the end of the treatments. Activities of phenylalanine ammonia lyase (PAL), cinnamyl alcohol dehydrogenase (CAD), 4-coumarate-CoA ligase (4CL), chalcone-flavanone isomerase (CHI), and dihydroflavonol reductase (DFR) were also determined. In treated plants, secondary metabolite-concentrations generally increased (higher concentrations being recorded in roots compared to leaves). Anomalies were recorded for lycopene in roots and phytosterols in leaves (all sampling ages); β-carotene declined in leaves at third sampling age. s-UV-B-treated plants depicted decrease in withanolide A content with concomitant increase in withaferin A (two major alkaloids analysed by HPLC) compared to their respective controls. Phenylpropanoid pathway enzyme-activities increased in leaves and roots under s-UV-B treatment, the latter showing greater increase. The study concludes that s-UV-B is a potent factor in increasing the concentrations of secondary metabolites and their biosynthetic pathway enzymes in W. somnifera.
Kim, Jung-Hoon
2017-09-15
Microwave-assisted extraction (MAE), an efficient extraction tool, was employed to extract a coumarin and five phenylpropanoids (cinnamic acid, cinnamyl alcohol, cinnamaldehyde, 2-hydroxycinnamadehyde, and 2-methoxycinnamaldehyde) from Cinnamomum cassia bark using water as the extraction solvent. Six marker compounds were quantified by high-performance liquid chromatography-diode array detector using a validated analytical method. To investigate the influences of temperature and time on the extraction yields of the six marker compounds, the water extracts of C. cassia bark were prepared using a MAE method at six different extraction temperatures (70, 75, 80, 85, 90, and 95°C) and times (2, 4, 6, 8, 10, and 12min). Their influences were assessed by multiple regression analysis. The results obtained demonstrated that higher extraction temperature and longer extraction time positively affected coumarin and cinnamyl alcohol contents, but negatively affected extract contents of cinnamic acid, cinnamaldehyde and 2-hydroxycinnamaldehyde (all p-extraction of 2-methoxycinnamaldehyde was affected by both positively and negatively by increasing temperature and time. These changes during MAE were assumed by the chemical natures of the marker compounds with various functional groups. In conclusion, temperature and times significantly affected the extraction efficiencies of a coumarin and five phenylpropanoids from C. cassia bark when a water-based MAE method was used. This study provides a novel approach to the preparation of the water extract of C. cassia bark using MAE. Copyright © 2017 Elsevier B.V. All rights reserved.
Msizi I Mhlongo
Full Text Available Plants have evolved both constitutive and inducible defence strategies to cope with different biotic stimuli and stresses. Exposure of a plant to a challenging stress can lead to a primed state that allows it to launch a more rapid and stronger defence. Here we applied a metabolomic approach to study and compare the responses induced in Nicotiana tabacum cells by microbe-associated molecular pattern (MAMP molecules, namely lipopolysaccharides (LPS, chitosan (CHT and flagellin-22 (FLG22. Early response metabolites, extracted with methanol, were analysed by UHPLC-MS/MS. Using multivariate statistical tools the metabolic profiles induced by these elicitors were analysed. In the metabolic fingerprint of these agents a total of 19 cinnamic acid derivatives conjugated to quinic acids (chlorogenic acids, shikimic acid, tyramine, polyamines or glucose were found as discriminant biomarkers. In addition, treatment with the phytohormones salicylic acid (SA, methyljasmonic acid (MJ and abscisic acid (ABA resulted in differentially-induced phenylpropanoid pathway metabolites. The results indicate that the phenylpropanoid pathway is activated by these elicitors while hydroxycinnamic acid derivatives are commonly associated with the metabolic response to the MAMPs, and that the activated responses are modulated by both SA and MJ, with ABA not playing a role.
Tattini, Massimiliano; Loreto, Francesco; Fini, Alessio; Guidi, Lucia; Brunetti, Cecilia; Velikova, Violeta; Gori, Antonella; Ferrini, Francesco
2015-08-01
The hypothesis was tested that isoprenoids and phenylpropanoids play a prominent role in countering photooxidative stress, following the depletion of antioxidant enzyme activity in plants exposed to severe drought stress under high solar irradiance and high temperatures. Platanus × acerifolia, a high isoprene-emitting species, was drought-stressed during summer (WS) and compared with unstressed controls (WW). Water relations and photosynthetic parameters were measured under mild, moderate, and severe drought stress conditions. Volatile and nonvolatile isoprenoids, antioxidant enzymes, and phenylpropanoids were measured with the same time course, but in four different periods of the day. Drought severely inhibited photosynthesis, whereas it did not markedly affect the photochemical machinery. Isoprene emission and zeaxanthin concentration were higher in WS than in WW leaves, particularly at mild and moderate stresses, and during the hottest hours of the day. The activities of catalase and ascorbate peroxidase steeply declined during the day, while the activity of guaiacol peroxidase and the concentration of quercetin increased during the day, peaking in the hottest hours in both WW and WS plants. Our experiment reveals a sequence of antioxidants that were used daily by plants to orchestrate defense against oxidative stress induced by drought and associated high light and high temperature. Secondary metabolites seem valuable complements of antioxidant enzymes to counter oxidative stress during the hottest daily hours.
Topological String Partition Function on Generalised Conifolds
Gasparim, Elizabeth; Suzuki, Bruno; Torres-Gomez, Alexander
2016-01-01
We show that the partition function on a generalised conifold $C_{m,n}$ with ${m+n \\choose m}$ crepant resolutions can be equivalently computed on the compound du Val singularity $A_{m+n-1}\\times \\mathbb C$ with a unique crepant resolution.
Protium, an infrastructure for partitioned applications
Mullender, Sape J.; Young, C.; Szymanski, T.; Reppy, J.; Presotto, D.; Pike, R.; Narlikar, G.
Remote access feels different from local access. The major issues are consistency (machines vary in GUIs, applications, and devices) and responsiveness (the user must wait for network and server delays). Protium attacks these by partitioning programs into local viewers that connect to remote
Fair Partitions of Polygons: An Elementary Introduction
R Nandakumar; N Ramana Rao
2012-08-01
We introduce the question: Given a positive integer , can any 2D convex polygonal region be partitioned into convex pieces such that all pieces have the same area and the same perimeter? The answer to this question is easily `yes’ for =2. We give an elementary proof that the answer is `yes’ for =4 and generalize it to higher powers of 2.
A Discrete Dynamical Model of Signed Partitions
G. Chiaselotti
2013-01-01
Full Text Available We use a discrete dynamical model with three evolution rules in order to analyze the structure of a partially ordered set of signed integer partitions whose main properties are actually not known. This model is related to the study of some extremal combinatorial sum problems.
Countering oversegmentation in partitioning-based connectivities
Ouzounis, Georgios K.; Wilkinson, Michael H.F.
2005-01-01
A new theoretical development is presented for handling the over-segmentation problem in partitioning-based connected openings. The definition we propose treats singletons generated with the earlier method, as elements of a larger connected component. Unlike the existing formalism, this new method a
Plasmid and chromosome partitioning: surprises from phylogeny
Gerdes, Kenn; Møller-Jensen, Jakob; Bugge Jensen, Rasmus
2000-01-01
Plasmids encode partitioning genes (par) that are required for faithful plasmid segregation at cell division. Initially, par loci were identified on plasmids, but more recently they were also found on bacterial chromosomes. We present here a phylogenetic analysis of par loci from plasmids and chr...
Mapping Pesticide Partition Coefficients By Electromagnetic Induction
A potential method for reducing pesticide leaching is to base application rates on the leaching potential of a specific chemical and soil combination. However, leaching is determined in part by the partitioning of the chemical between the soil and soil solution, which varies across a field. Standard...
Scheduling Driven Partitioning of Heterogeneous Embedded Systems
Pop, Paul; Eles, Petru; Peng, Zebo
1998-01-01
In this paper we present an algorithm for system level hardware/software partitioning of heterogeneous embedded systems. The system is represented as an abstract graph which captures both data-flow and the flow of control. Given an architecture consisting of several processors, ASICs and shared b...
Subsets of configurations and canonical partition functions
Bloch, J.; Bruckmann, F.; Kieburg, M.;
2013-01-01
We explain the physical nature of the subset solution to the sign problem in chiral random matrix theory: the subset sum over configurations is shown to project out the canonical determinant with zero quark charge from a given configuration. As the grand canonical chiral random matrix partition...
Hydrologic transport and partitioning of phosphorus fractions
Berretta, C.; Sansalone, J.
2011-06-01
SummaryPhosphorus (P) in rainfall-runoff partitions between dissolved and particulate matter (PM) bound phases. This study investigates the transport and partitioning of P to PM fractions in runoff from a landscaped and biogenically-loaded carpark in Gainesville, FL (GNV). Additionally, partitioning and concentration results are compared to a similarly-sized concrete-paved source area of a similar rainfall depth frequency distribution in Baton Rouge, LA (BTR), where in contrast vehicular traffic represents the main source of pollutants. Results illustrate that concentrations of P fractions (dissolved, suspended, settleable and sediment) for GNV are one to two orders of magnitude higher than BTR. Despite these differences the dissolved fraction ( f d) and partitioning coefficient ( K d) distributions are similar, illustrating that P is predominantly bound to PM fractions. Examining PM size fractions, specific capacity for P (PSC) indicates that the P concentration order is suspended > settleable > sediment for GNV, similarly to BTR. For GNV the dominant PM mass fraction is sediment (>75 μm), while the mass of P is distributed predominantly between sediment and suspended (<25 μm) fractions since these PM mass fractions dominated the settleable one. With respect to transport of PM and P fractions the predominance of events for both areas is mass-limited first-flush, although each fraction illustrated unique washoff parameters. However, while transport is predominantly mass-limited, the transport of each PM and P fraction is influenced by separate hydrologic parameters.
Actinide and fission product partitioning and transmutation
NONE
1995-07-01
The third international information exchange meeting on actinide and fission product partitioning and transmutation, took place in Cadarache France, on 12-14 December 1994. The proceedings are presented in six sessions : an introduction session, the major programmes and international cooperation, the systems studies, the reactors fuels and targets, the chemistry and a last discussions session. (A.L.B.)
Partitioning of selected antioxidants in mayonnaise.
Jacobsen, C; Schwarz, K; Stöckmann, H; Meyer, A S; Adler-Nissen, J
1999-09-01
This study examined partitioning of alpha-, beta-, and gamma-tocopherol and six polar antioxidants (Trolox, ferulic acid, caffeic acid, propyl gallate, gallic acid, and catechin) in mayonnaise. Partitioning of antioxidants between different phases was determined after separation of mayonnaise by either (a) centrifugation + ultracentrifugation or (b) centrifugation + dialysis. Antioxidants partitioned in accordance with their chemical structure and polarity: Tocopherols were concentrated in the oil phase (93-96%), while the proportion of polar antioxidants in the oil phase ranged from 0% (gallic acid and catechin) to 83% (Trolox). Accordingly, proportions of 6% (Trolox) to 80% (gallic acid and catechin) were found in the aqueous phase. Similar trends were observed after dialysis. After ultracentrifugation, large proportions of polar antioxidants were found in the "emulsion phase" and the "precipitate" (7-34% and 2-7%, respectively). This indicated entrapment of antioxidants at the oil-water interface in mayonnaise. The results signify that antioxidants partitioning into different phases of real food emulsions may vary widely.
Protium, an Infrastructure for Partitioned Applications
Mullender, S.J.; Young, C.; Szymanski, T.; Reppy, J.; Presotto, D.; Pike, R.; Narlikar, G.
2001-01-01
Remote access feels different from local access. The major issues are consistency (machines vary in GUIs, applications, and devices) and responsiveness (the user must wait for network and server delays). Protium attacks these by partitioning programs into local viewers that connect to remote service
Domain wall partition functions and KP
Foda, O; Zuparic, M
2009-01-01
We observe that the partition function of the six vertex model on a finite square lattice with domain wall boundary conditions is (a restriction of) a KP tau function and express it as an expectation value of charged free fermions (up to an overall normalization).
Discrepancy of LS-sequences of partitions
Carbone, Ingrid
2010-01-01
In this paper we give a precise estimate of the discrepancy of a class of uniformly distributed sequences of partitions. Among them we found a large class having low discrepancy (which means of order 1/N. One of them is the Kakutani-Fibonacci sequence.
Polynomial Structure of Topological String Partition Functions
Zhou, Jie
2015-01-01
We review the polynomial structure of the topological string partition functions as solutions to the holomorphic anomaly equations. We also explain the connection between the ring of propagators defined from special K\\"ahler geometry and the ring of almost-holomorphic modular forms defined on modular curves.
Hardware Index to Set Partition Converter
2013-01-01
Boolean matching under permutation by efficient computation of canonical form. IEICE Trans. Fundamentals (12), 3134–3140 (2004) 6. Beeler, M., Gosper...Wesley ISBN: 0-321-58050-8 9. Kawano, S., Nakano, S.: Constant time generation of set partitions. IEICE Trans. Fundamentals E88-A(4), 930–934 (2005) 10
Integral complete r-partite graphs
Wang, Ligong; Li, Xueliang; Hoede, C.
2004-01-01
A graph is called integral if all the eigenvalues of its adjacency matrix are integers. In this paper, we give a useful sufficient and necessary condition for complete r-partite graphs to be integral, from which we can construct infinite many new classes of such integral graphs. It is proved that
Open software tools for eddy covariance flux partitioning
Agro-ecosystem management and assessment will benefit greatly from the development of reliable techniques for partitioning evapotranspiration (ET) into evaporation (E) and transpiration (T). Among other activities, flux partitioning can aid in evaluating consumptive vs. non-consumptive agricultural...
An ETL optimization framework using partitioning and parallelization
Iftikhar, Nadeem
2015-01-01
presents an optimization framework using partitioning and parallelization. The framework first partitions an ETL dataflow into multiple execution trees according to the characteristics of ETL constructs, then within an execution tree pipelined parallelism and shared cache are used to optimize...
The importance of applying an appropriate data partitioning
Dimitrov, Gancho; The ATLAS collaboration
2015-01-01
In this presentation are described specific technical solutions put in place in various database applications of the ATLAS experiment at LHC where we make use of several partitioning techniques available in Oracle 11g. With the broadly used range partitioning and its option of automatic interval partitioning we add our own logic in PLSQL procedures and scheduler jobs to sustain data sliding windows in order to enforce various data retention policies. We also make use of the new Oracle 11g reference partitioning in the ATLAS Nightly Build System to achieve uniform data segmentation. However the most challenging was to segment the data of the new ATLAS Distributed Data Management system, which resulted in tens of thousands list type partitions and sub-partitions. Partition and sub-partition management, index strategy, statistics gathering and queries execution plan stability are important factors when choosing an appropriate physical model for the application data management. The so-far accumulated knowledge wi...
Shetty, Radhakrishna; Fretté, Xavier; Jensen, Birgit
2011-01-01
in the phenylpropanoid pathway (phenylalanine ammonia lyase, cinnamyl alcohol dehydrogenase, and chalcone synthase) was up-regulated. The increase in phenolic compounds correlated with a 46% reduction in disease severity compared with inoculated leaves without Si application (Si-). Furthermore, Si application without...
Mathe, Zoltan; Charpentier, Philippe
2014-06-01
The LHCb experiment produces a huge amount of data which has associated metadata such as run number, data taking condition (detector status when the data was taken), simulation condition, etc. The data are stored in files, replicated on the Computing Grid around the world. The LHCb Bookkeeping System provides methods for retrieving datasets based on their metadata. The metadata is stored in a hybrid database model, which is a mixture of Relational and Hierarchical database models and is based on the Oracle Relational Database Management System (RDBMS). The database access has to be reliable and fast. In order to achieve a high timing performance, the tables are partitioned and the queries are executed in parallel. When we store large amounts of data the partition pruning is essential for database performance, because it reduces the amount of data retrieved from the disk and optimises the resource utilisation. This research presented here is focusing on the extended composite partitioning strategy such as range-hash partition, partition pruning and usage of the Partition-Wise joins. The system has to serve thousands of queries per minute, the performance and capability of the system is measured when the above performance optimization techniques are used.
Using Reward/Utility Based Impact Scores in Partitioning
2014-05-01
ing approach called Reward/Utility-Based Impact ( RUBI ). RUBI nds an e ective partitioning of agents while requir- ing no prior domain knowledge...provides better performance by discovering a non-trivial agent partitioning, and leads to faster simulations. We test RUBI in the Air Tra c Flow Management...partitioning with RUBI in the ATFMP, there is a 37% increase in per- formance, with a 510x speed up per simulation step over non-partitioning approaches
GPU Acceleration of Graph Matching, Clustering, and Partitioning
Fagginger Auer, B.O.|info:eu-repo/dai/nl/326659072
2013-01-01
We consider sequential algorithms for hypergraph partitioning and GPU (i.e., fine-grained shared-memory parallel) algorithms for graph partitioning and clustering. Our investigation into sequential hypergraph partitioning is concerned with the efficient construction of high-quality matchings for hyp
GPU Acceleration of Graph Matching, Clustering, and Partitioning
Fagginger Auer, B.O.
2013-01-01
We consider sequential algorithms for hypergraph partitioning and GPU (i.e., fine-grained shared-memory parallel) algorithms for graph partitioning and clustering. Our investigation into sequential hypergraph partitioning is concerned with the efficient construction of high-quality matchings for hyp
Bounds for the Eventual Positivity of Difference Functions of Partitions
Woodford, Roger
2007-01-01
In this paper we specialize work done by Bateman and Erdos concerning difference functions of partition functions. In particular, we are concerned with partitions into fixed powers of the primes. We show that any difference function of these partition functions is eventually increasing, and derive explicit bounds for when it will attain strictly positive values. From these bounds an asymptotic result is derived.
Gilbert, Dorothea; Witt, Gesine; Smedes, Foppe
2016-01-01
as the basis for a deeper insight into partitioning differences of HOCs between polymers, calibrating analytical methods, and consistency checking of existing and calculation of new partition coefficients. Polymer-polymer partition coefficients were determined for polychlorinated biphenyls (PCBs), polycyclic...... larger deviations from unity were indicated within the group of silicones and between silicones and LDPE. Uncertainty in polymer volume due to imprecise coating thickness or the presence of fillers was identified as the source of error for partition coefficients. New polymer-based (LDPE-lipid, PDMS......-air) and multimedia partition coefficients (lipid-water, air-water) were calculated by applying the new concept of a polymer as reference partitioning phase and by using polymer-polymer partition coefficients as conversion factors. The present study encourages the use of polymer-polymer partition coefficients...
The Benefits of Adaptive Partitioning for Parallel AMR Applications
Steensland, Johan [Sandia National Lab. (SNL-CA), Livermore, CA (United States). Advanced Software Research and Development
2008-07-01
Parallel adaptive mesh refinement methods potentially lead to realistic modeling of complex three-dimensional physical phenomena. However, the dynamics inherent in these methods present significant challenges in data partitioning and load balancing. Significant human resources, including time, effort, experience, and knowledge, are required for determining the optimal partitioning technique for each new simulation. In reality, scientists resort to using the on-board partitioner of the computational framework, or to using the partitioning industry standard, ParMetis. Adaptive partitioning refers to repeatedly selecting, configuring and invoking the optimal partitioning technique at run-time, based on the current state of the computer and application. In theory, adaptive partitioning automatically delivers superior performance and eliminates the need for repeatedly spending valuable human resources for determining the optimal static partitioning technique. In practice, however, enabling frameworks are non-existent due to the inherent significant inter-disciplinary research challenges. This paper presents a study of a simple implementation of adaptive partitioning and discusses implied potential benefits from the perspective of common groups of users within computational science. The study is based on a large set of data derived from experiments including six real-life, multi-time-step adaptive applications from various scientific domains, five complementing and fundamentally different partitioning techniques, a large set of parameters corresponding to a wide spectrum of computing environments, and a flexible cost function that considers the relative impact of multiple partitioning metrics and diverse partitioning objectives. The results show that even a simple implementation of adaptive partitioning can automatically generate results statistically equivalent to the best static partitioning. Thus, it is possible to effectively eliminate the problem of determining the
Partitioning and transmutation. Annual Report 1999
Ekberg, C.; Enarsson, Aa.; Gustavsson, C.; Landgren, A.; Liljenzin, J.O.; Spjuth, L. [Chalmers Univ. of Technology, Goeteborg (Sweden). Dept. of Nuclear Chemistry
2000-05-01
The current research project on partitioning and transmutation at the Dept. of Nuclear Chemistry, CTH, has the primary objective to investigate separation processes useful in connection with transmutation of long-lived radionuclides in high level nuclear waste. Partitioning is necessary in order to recover and purify the elements before and after each irradiation in a P and T treatment. In order to achieve a high transmutation efficiency the chemical separation process used must have small losses to various waste streams. At present, only aqueous based separation processes are known to be able to achieve the high recovery and separation efficiencies necessary for a useful P and T process. During 1999 two of the three PhD students in this project have finalised their dissertations. Lena Spjuth has been working with oligo pyridines, triazines and malonamides; Anders Landgren has studied Aliquat-336 and redox kinetics. Two papers, included as appendices in the report, have been separately indexed.
Analysis of fractals with combined partition
Dedovich, T. G.; Tokarev, M. V.
2016-03-01
The space—time properties in the general theory of relativity, as well as the discreteness and non-Archimedean property of space in the quantum theory of gravitation, are discussed. It is emphasized that the properties of bodies in non-Archimedean spaces coincide with the properties of the field of P-adic numbers and fractals. It is suggested that parton showers, used for describing interactions between particles and nuclei at high energies, have a fractal structure. A mechanism of fractal formation with combined partition is considered. The modified SePaC method is offered for the analysis of such fractals. The BC, PaC, and SePaC methods for determining a fractal dimension and other fractal characteristics (numbers of levels and values of a base of forming a fractal) are considered. It is found that the SePaC method has advantages for the analysis of fractals with combined partition.
Partitioning Complete Graphs by Heterochromatic Trees
Ze-min JIN; Xue-liang LI
2012-01-01
A heterochromatic tree is an edge-colored tree in which any two edges have different colors.The heterochroratic tree partition number of an r-edge-colored graph G,denoted by tr(G),is the minimum positive integer p such that whenever the edges of the graph G are colored with r colors,the vertices of G can be covered by at most p vertex-disjoint heterochromatic trees.In this paper we determine the heterochromatic tree partition number of r-edge-colored complete graphs.We also find at most tr(Kn) vertex-disjoint heterochromatic trees to cover all the vertices in polynomial time for a given r-edge-coloring of Kn.
Supersymmetric partition functions on Riemann surfaces
Benini, Francesco
2016-01-01
We present a compact formula for the supersymmetric partition function of 2d N=(2,2), 3d N=2 and 4d N=1 gauge theories on $\\Sigma_g \\times T^n$ with partial topological twist on $\\Sigma_g$, where $\\Sigma_g$ is a Riemann surface of arbitrary genus and $T^n$ is a torus with n=0,1,2, respectively. In 2d we also include certain local operator insertions, and in 3d we include Wilson line operator insertions along $S^1$. For genus g=1, the formula computes the Witten index. We present a few simple Abelian and non-Abelian examples, including new tests of non-perturbative dualities. We also show that the large N partition function of ABJM theory on $\\Sigma_g \\times S^1$ reproduces the Bekenstein-Hawking entropy of BPS black holes in AdS4 whose horizon has $\\Sigma_g$ topology.
Partition-DFT on the Water Dimer
Gómez, Sara; Restrepo, Albeiro; Wasserman, Adam
2016-01-01
As is well known, the ground-state symmetry group of the water dimer switches from its equilibrium $C_{s}$-character to $C_{2h}$-character as the distance between the two oxygen atoms of the dimer decreases below $R_{\\rm O-O}\\sim 2.5$ \\AA{}. For a range of $R_{\\rm O-O}$ between 1 and 5 \\AA{}, and for both symmetries, we apply Partition Density Functional Theory (PDFT) to find the unique monomer densities that sum to the correct dimer densities while minimizing the sum of the monomer energies. We calculate the work involved in deforming the isolated monomer densities and find that it is slightly larger for the $C_s$ geometry for all $R_{\\rm O-O}$. We discuss how the PDFT densities and the corresponding partition potentials support the orbital-interaction picture of hydrogen-bond formation.
Spectral partitioning of random regular blockmodels
Barucca, Paolo
2016-01-01
Graph partitioning problems emerge in a wide variety of complex systems, ranging from biology to finance, but can be rigorously analyzed and solved only for a few graph ensembles. Here, an ensemble of random graphs with regular block structure is introduced, for which analytical results can be obtained. In particular, the spectral density of such random regular blockmodels is computed exactly for a modular, bipartite and core-periphery structure. McKay's law for random regular graphs is found analytically to apply also for regular modular and bipartite structures when blocks are homogeneous. In core-periphery structures, where blocks are intrinsically heterogeneous, a new law is found to apply for the spectral density. Exact solution to the inference problem is provided for the models discussed. All analytical results show perfect agreement with numerical experiments. Final discussion summarizes results and outlines the relevance of the results for the solution of graph partitioning problems in other graph en...
Non-parametric partitioning of SAR images
Delyon, G.; Galland, F.; Réfrégier, Ph.
2006-09-01
We describe and analyse a generalization of a parametric segmentation technique adapted to Gamma distributed SAR images to a simple non parametric noise model. The partition is obtained by minimizing the stochastic complexity of a quantized version on Q levels of the SAR image and lead to a criterion without parameters to be tuned by the user. We analyse the reliability of the proposed approach on synthetic images. The quality of the obtained partition will be studied for different possible strategies. In particular, one will discuss the reliability of the proposed optimization procedure. Finally, we will precisely study the performance of the proposed approach in comparison with the statistical parametric technique adapted to Gamma noise. These studies will be led by analyzing the number of misclassified pixels, the standard Hausdorff distance and the number of estimated regions.
An exact algorithm for graph partitioning
Hager, William; Zhang, Hongchao
2009-01-01
An exact algorithm is presented for solving edge weighted graph partitioning problems. The algorithm is based on a branch and bound method applied to a continuous quadratic programming formulation of the problem. Lower bounds are obtained by decomposing the objective function into convex and concave parts and replacing the concave part by an affine underestimate. It is shown that the best affine underestimate can be expressed in terms of the center and the radius of the smallest sphere containing the feasible set. The concave term is obtained either by a constant diagonal shift associated with the smallest eigenvalue of the objective function Hessian, or by a diagonal shift obtained by solving a semidefinite programming problem. Numerical results show that the proposed algorithm is competitive with state-of-the-art graph partitioning codes.
Hypergraph Partitioning through Vertex Separators on Graphs
Kayaaslan, Enver; Catalyurek, Umit V; Aykanat, Cevdet
2011-01-01
The modeling flexibility provided by hypergraphs has drawn a lot of interest from the combinatorial scientific community, leading to novel models and algorithms, their applications, and development of associated tools. Hypergraphs are now a standard tool in combinatorial scientific computing. The modeling flexibility of hypergraphs however, comes at a cost: algorithms on hypergraphs are inherently more complicated than those on graphs, which sometimes translate to nontrivial increases in processing times. Neither the modeling flexibility of hypergraphs, nor the runtime efficiency of graph algorithms can be overlooked. Therefore, the new research thrust should be how to cleverly trade-off between the two. This work addresses one method for this trade-off by solving the hypergraph partitioning problem by finding vertex separators on graphs. Specifically, we investigate how to solve the hypergraph partitioning problem by seeking a vertex separator on its net intersection graph (NIG), where each net of the hyperg...
Nested partitions method, theory and applications
Shi, Leyuan
2009-01-01
There is increasing need to solve large-scale complex optimization problems in a wide variety of science and engineering applications, including designing telecommunication networks for multimedia transmission, planning and scheduling problems in manufacturing and military operations, or designing nanoscale devices and systems. Advances in technology and information systems have made such optimization problems more and more complicated in terms of size and uncertainty. Nested Partitions Method, Theory and Applications provides a cutting-edge research tool to use for large-scale, complex systems optimization. The Nested Partitions (NP) framework is an innovative mix of traditional optimization methodology and probabilistic assumptions. An important feature of the NP framework is that it combines many well-known optimization techniques, including dynamic programming, mixed integer programming, genetic algorithms and tabu search, while also integrating many problem-specific local search heuristics. The book uses...
On the Potts Model Partition Function in an External Field
McDonald, Leslie M.; Moffatt, Iain
2012-03-01
We study the partition function of the Potts model in an external (magnetic) field, and its connections with the zero-field Potts model partition function. Using a deletion-contraction formulation for the partition function Z for this model, we show that it can be expanded in terms of the zero-field partition function. We also show that Z can be written as a sum over the spanning trees, and the spanning forests, of a graph G. Our results extend to Z the well-known spanning tree expansion for the zero-field partition function that arises though its connections with the Tutte polynomial.
A Contraction-based Ratio-cut Partitioning Algorithm
Youssef Saab
2002-01-01
Full Text Available Partitioning is a fundamental problem in the design of VLSI circuits. In recent years, ratio-cut partitioning has received attention due to its tendency to partition circuits into their natural clusters. Node contraction has also been shown to enhance the performance of iterative partitioning algorithms. This paper describes a new simple ratio-cut partitioning algorithm using node contraction. This new algorithm combines iterative improvement with progressive cluster formation. Under suitably mild assumptions, the new algorithm runs in linear time. It is also shown that the new algorithm compares favorably with previous approaches.
Partitioning coefficients between olivine and silicate melts
Bédard, J. H.
2005-08-01
Variation of Nernst partition coefficients ( D) between olivine and silicate melts cannot be neglected when modeling partial melting and fractional crystallization. Published natural and experimental olivine/liquidD data were examined for covariation with pressure, temperature, olivine forsterite content, and melt SiO 2, H 2O, MgO and MgO/MgO + FeO total. Values of olivine/liquidD generally increase with decreasing temperature and melt MgO content, and with increasing melt SiO 2 content, but generally show poor correlations with other variables. Multi-element olivine/liquidD profiles calculated from regressions of D REE-Sc-Y vs. melt MgO content are compared to results of the Lattice Strain Model to link melt MgO and: D0 (the strain compensated partition coefficient), EM3+ (Young's Modulus), and r0 (the size of the M site). Ln D0 varies linearly with Ln MgO in the melt; EM3+ varies linearly with melt MgO, with a dog-leg at ca. 1.5% MgO; and r0 remains constant at 0.807 Å. These equations are then used to calculate olivine/liquidD for these elements using the Lattice Strain Model. These empirical parameterizations of olivine/liquidD variations yield results comparable to experimental or natural partitioning data, and can easily be integrated into existing trace element modeling algorithms. The olivine/liquidD data suggest that basaltic melts in equilibrium with pure olivine may acquire small negative Ta-Hf-Zr-Ti anomalies, but that negative Nb anomalies are unlikely to develop. Misfits between results of the Lattice Strain Model and most light rare earth and large ion lithophile partitioning data suggest that kinetic effects may limit the lower value of D for extremely incompatible elements in natural situations characterized by high cooling/crystallization rates.
Metal partitioning and toxicity in sewage sludge
Carlson-Ekvall, C.E.A.; Morrison, G.M. [Chalmers Univ. of Technology, Goeteborg (Sweden). Dept. of Sanitary Engineering
1995-12-31
Over 20 years of research has failed to provide an unequivocal correlation between chemically extracted metals in sewage sludge applied to agricultural soil and either metal toxicity to soil organisms or crop uptake. Partitioning of metals between phases and species can provide a better estimation of mobility and potential bioavailability. Partition coefficients, K{sub D} for Cd, Cu, Pb and Zn in a sludge/water solution were determined considering the sludge/water solution as a three-phase system (particulate, colloidal and electrochemically available) over a range of pH values, ionic strengths, contact times and sludge/water ratios and compared with the KD values for sludge/water solution as a two-phase system (aqueous phase and particulate phase). Partitioning results were interpreted in terms of metal mobility from sludge to colloids and in terms of potential bioavailability from colloids to electrochemically available. The results show that both mobility and potential bioavailability are high for Zn, while Cu partitions into the mobile colloidal phase which is relatively non-bioavailable. Lead is almost completely bound to the solid phase, and is neither mobile nor bioavailable. A comparison between K, values and toxicity shows that Zn in sludge is more toxic than can be accounted for in the aqueous phase, which can be due to synergistic effects between sludge organics and Zn. Copper demonstrates clear synergism which can be attributed to the formation of lipid-soluble Cu complexes with known sludge components such as LAS, caffeine, myristic acid and nonylphenol.
Partition of polycyclic aromatic hydrocarbons on organobentonites
无
2001-01-01
A series of organobentonites synthesized by exchanging organiccation such as dodecyltri-methylammonium (DTMA),benzyldimethyltetradecylammonium (BDTDA), cetyltrimethyl-ammonium (CTMA), octodeyltrimethylammonium (OTMA) on bentonite. The optimal condition, properties and mechanisms for the organobentonites to sorb phenanthrene, anthracene, naphthalene, acenaphthene in water were investigated in detail. The partition behavior was determined for four polycyclic aromatic hydrocarbons (PAHs), such as naphthalene, phenanthrene, anthracene and acenaphthene, from water to a series of organobentonites. The interlayer spacings and organic carbon contents of organobentonites, removal rate and sorption capacities for organobentonites to treat phenanthrene,anthracene, naphthalene, acenaphthene were correlated to the length of alkyl chains and the amounts of cation surfactant exchanged on Foundation item: the bentonite. Phenanthrene, anthracene, naphthalene, and acenaphthene sorption to organobentonites were characterized by linear isotherms, indicating solute partition between water and the organic phase composed of the large alkyl functional groups of quaternary ammonium cations. PAHs distribution coefficients (Kd)between organobentonites and water were proportional to the organic carbon contents of organobentonites. However, the partition coefficients (Koc) were nearly constants for PAHs in the system of organobentonite-water. The Koc of phenanthrene, anthracene,naphthalene, acenaphthene were 2.621x105, 2.106x105, 2.247x104,5.085x104, respectively. The means Koc values on the organobentonites are about ten to twenty times larger than the values on the soils/sediments, what is significant prerequisite for organobentonite to apply to remediation of pollution soil and groundwater. The sorption mechanism was also evaluated from octanol-water partition coefficients and aqueous solubility of PAHs. The correlations between lgKoc and 1gkow, 1gKoc and 1gS for PAHs in the system of water
Recursive formulae for the multiplicative partition function
Jun Kyo Kim
1999-01-01
Full Text Available For a positive integer n, let f(n be the number of essentially different ways of writing n as a product of factors greater than 1, where two factorizations of a positive integer are said to be essentially the same if they differ only in the order of the factors. This paper gives a recursive formula for the multiplicative partition function f(n.
SCORE SETS IN ORIENTED 3-PARTITE GRAPHS
无
2007-01-01
Let D(U, V, W) be an oriented 3-partite graph with |U|=p, |V|=q and |W|= r. For any vertex x in D(U, V, W), let d+x and d-x be the outdegree and indegree of x respectively. Define aui (or simply ai) = q + r + d+ui - d-ui, bvj(or simply bj) = p + r + d+vj - d-vj and Cwk (or simply ck) = p + q + d+wk - d-wk as the scores of ui in U, vj in V and wk in Wrespectively. The set A of distinct scores of the vertices of D(U, V, W) is called its score set. In this paper, we prove that if a1 is a non-negative integer, ai(2≤i≤n - 1) are even positive integers and an is any positive integer, then for n≥3, there exists an oriented 3-partite graph with the score set A = {a1,2∑i=1 ai,…,n∑i=1 ai}, except when A = {0,2,3}. Some more results for score sets in oriented 3-partite graphs are obtained.
Gilbert, Dorothea; Witt, Gesine; Smedes, Foppe; Mayer, Philipp
2016-06-07
Polymers are increasingly applied for the enrichment of hydrophobic organic chemicals (HOCs) from various types of samples and media in many analytical partitioning-based measuring techniques. We propose using polymers as a reference partitioning phase and introduce polymer-polymer partitioning as the basis for a deeper insight into partitioning differences of HOCs between polymers, calibrating analytical methods, and consistency checking of existing and calculation of new partition coefficients. Polymer-polymer partition coefficients were determined for polychlorinated biphenyls (PCBs), polycyclic aromatic hydrocarbons (PAHs), and organochlorine pesticides (OCPs) by equilibrating 13 silicones, including polydimethylsiloxane (PDMS) and low-density polyethylene (LDPE) in methanol-water solutions. Methanol as cosolvent ensured that all polymers reached equilibrium while its effect on the polymers' properties did not significantly affect silicone-silicone partition coefficients. However, we noticed minor cosolvent effects on determined polymer-polymer partition coefficients. Polymer-polymer partition coefficients near unity confirmed identical absorption capacities of several PDMS materials, whereas larger deviations from unity were indicated within the group of silicones and between silicones and LDPE. Uncertainty in polymer volume due to imprecise coating thickness or the presence of fillers was identified as the source of error for partition coefficients. New polymer-based (LDPE-lipid, PDMS-air) and multimedia partition coefficients (lipid-water, air-water) were calculated by applying the new concept of a polymer as reference partitioning phase and by using polymer-polymer partition coefficients as conversion factors. The present study encourages the use of polymer-polymer partition coefficients, recognizing that polymers can serve as a linking third phase for a quantitative understanding of equilibrium partitioning of HOCs between any two phases.
Świeca, Michał
2016-02-01
This paper presents the study on impact of elicitation and the phenylpropanoid pathway feeding on the nutritional quality, the potentially bioaccessible phenolics and the antioxidant capacity of young buckwheat sprouts. Phenolics content was increased by elicitation and feeding with tyrosine and shikimic acid--an elevation of 30% and 17%, respectively. Antioxidant capacity was improved by feeding with tyrosine--an increase of 16.7% and 17.1% in both untreated and treated sprouts, respectively. The highest protein digestibility was determined for the control sprouts and those obtained after tyrosine feeding. The lowest starch digestibility was found for elicited sprouts obtained from seeds fed with tyrosine (a decrease by 52%). An increase of expected glycemic index by 38% was determined for elicited sprouts obtained after phenylalanine feeding. Starch and protein digestibility were negatively correlated with total phenolics (r = -0.55 and -0.58, respectively), however starch digestibility was also affected by resistant starch content.
Gao, Zhong-Hua; Shi, Yi-Ming; Qiang, Zhe; Wang, Xia; Shang, Shan-Zhai; Yang, Yan; Du, Bao-Wen; Peng, Hui-Pan; Ji, Xu; Li, Honglin; Wang, Fei; Xiao, Wei-Lie
2016-04-01
Plasiatine (1), isolated from the seeds of Plantago asiatica, is an unprecedented indole analogue linked to a phenylpropanoid moiety via a carbon bond that builds up a novel heteromeric construction with a C19N2 scaffold. Its structure was determined by spectroscopic data and computational evidence. Notably, experimental assay demonstrated that 1 significantly enhanced the activity of the nonreceptor protein tyrosine phosphatase Shp2 in vitro in a concentration-dependent manner with an EC50 value of 0.97 μM, and activated phosphorylation of ERK, a known target of Shp2. Moreover, plasiatine (1) promoted hepatocellular HepG2 cells migration. Molecular docking suggested that plasiatine (1) binds to the catalytic cleft of Shp2. These results identified plasiatine (1) as the first small molecule Shp2 activator, and it warrants further investigation as a novel pharmaceutical tool to study the function of Shp2 in tumorigenesis.
Hadas Peled-Zehavi
2015-11-01
Full Text Available Plants produce a diverse repertoire of specialized metabolites that have multiple roles throughout their life cycle. Some of these metabolites are essential components of the aroma and flavor of flowers and fruits. Unfortunately, attempts to increase the yield and prolong the shelf life of crops have generally been associated with reduced levels of volatile specialized metabolites and hence with decreased aroma and flavor. Thus, there is a need for the development of new varieties that will retain their desired traits while gaining enhanced scent and flavor. Metabolic engineering holds great promise as a tool for improving the profile of emitted volatiles of domesticated crops. This mini review discusses recent attempts to utilize metabolic engineering of the phenylpropanoid and its primary precursor pathway to enhance the aroma and flavor of flowers and fruits.
Schmitt, S; Schaefer, U; Sporer, F; Reichling, J
2010-02-01
Essential oils are ingredients of cosmetic and health care products as well as massage oil used in aromatherapy. There is no doubt that essential oils and their components are able to permeate human skin. But information is rare dealing with percutanous absorption of essential oils in more detail. In this paper we investigated the in vitro skin permeation of monoterpenes and phenylpropanoids applied in pure rose oil and in form of neat single substances. We found that the application form had an exceeding influence on the skin permeation behaviour of the compounds. For substances applied in rose oil a clear relationship between their lipophilic character, chemical structure, and skin permeation could be confirmed. Regarding the P(app)-values the substances are ranked in the order: monoterpene hydrocarbons rose oil than in their neat form. This suggests that co-operative interactions between essential oil components may promote skin permeation behaviour of essential oil and its components.
Yao, Yinan; You, Jingjing; Ou, Yongbin; Ma, Jinbiao; Wu, Xiuli; Xu, Gang
2015-05-01
Ascorbate and tocopherol are important hydrophilic or lipophilic antioxidants in plants, while their crucial roles in the antioxidant defense system under ultraviolet B radiation were not well understood. The mutants of Arabidopsis thaliana deficient in ascorbate (vtc1 and vtc2) or tocopherol (vte1) were used to analyze their physiological, biochemical and metabolic change in responses to Ultraviolet B radiation. Results showed that loss of either ascorbate or tocopherol caused reduction in phenylpropanoid and flavonol glycosides compounds, as well as reduction in superoxide dismutase activity and total cellular antioxidant capacity. This ultimately led to higher oxidative stress as well as lower levels of photosynthetic pigments (carotenoid and chlorophyll) and CO2 assimilation rate in the vtc1, vtc2, and vte1 mutants than the wild type under UV-B radiation, besides unstable early light-induced protein (ELIP1) in those mutants. On the other hand, the loss of tocopherol in vte1 mutants was compensated by the increase of zeaxanthin and anthocyanin contents, which armed vte1 mutants with higher heat dissipation capacity in PS II and higher antioxidative capacity than vtc mutants. Consequently the tolerance to UV-B radiation were much higher in vte1 mutant than in vtc mutants, furthermore, PS II function and light harvesting protein (LHCb1) abundance were reduced only in ascorbate-deficient mutant relative to wild type. Our results suggested that the ascorbate and tocopherol provided not only direct protective function against UV-B radiation but also indirect effects by influencing other protective system, in particular by affecting the stability of various carotenoid and phenylpropanoid compounds.
Mathe, Z
2013-01-01
The LHCb experiment produces a huge amount of data which has associated metadata such as run number, data taking condition (detector status when the data was taken), simulation condition, etc. The data are stored in files, replicated on the Computing Grid around the world. The LHCb Bookkeeping System provides methods for retrieving datasets based on their metadata. The metadata is stored in a hybrid database model, which is a mixture of Relational and Hierarchical database models and is based on the Oracle Relational Database Management System (RDBMS). The database access has to be reliable and fast. In order to achieve a high timing performance, the tables are partitioned and the queries are executed in parallel. When we store large amounts of data the partition pruning is essential for database performance, because it reduces the amount of data retrieved from the disk and optimises the resource utilisation. This research presented here is focusing on the extended composite partitioning strategy such as rang...
A brief history of partitions of numbers, partition functions and their modern applications
Debnath, Lokenath
2016-04-01
'Number rules the universe.' The Pythagoras 'If you wish to forsee the future of mathematics our course is to study the history and present conditions of the science.' Henri Poincaré 'The primary source (Urqell) of all mathematics are integers.' Hermann Minkowski This paper is written to commemorate the centennial anniversary of the Mathematical Association of America. It deals with a short history of different kinds of natural numbers including triangular, square, pentagonal, hexagonal and k-gonal numbers, and their simple properties and their geometrical representations. Included are Euclid's and Pythagorean's main contributions to elementary number theory with the main contents of the Euclid Elements of the 13-volume masterpiece of mathematical work. This is followed by Euler's new discovery of the additive number theory based on partitions of numbers. Special attention is given to many examples, Euler's theorems on partitions of numbers with geometrical representations of Ferrers' graphs, Young's diagrams, Lagrange's four-square theorem and the celebrated Waring problem. Included are Euler's generating functions for the partitions of numbers, Euler's pentagonal number theorem, Gauss' triangular and square number theorems and the Jacobi triple product identity. Applications of the theory of partitions of numbers to different statistics such as the Bose- Einstein, Fermi- Dirac, Gentile, and Maxwell- Boltzmann statistics are briefly discussed. Special attention is given to pedagogical information through historical approach to number theory so that students and teachers at the school, college and university levels can become familiar with the basic concepts of partitions of numbers, partition functions and their modern applications, and can pursue advanced study and research in analytical and computational number theory.
Payyavula, Raja S; Tay, Kate H C; Tsai, Chung-Jui; Harding, Scott A
2011-03-01
Plasma membrane, proton-coupled Group II sucrose symporters (SUT) mediate apoplastic phloem loading and sucrose efflux from source leaves in Arabidopsis and agricultural crop species that have been studied to date. We now report that the most abundantly expressed SUT isoform in Populus tremula×alba, PtaSUT4, is a tonoplast (Group IV) symporter. PtaSUT4 transcripts were readily detected in conducting as well as mesophyll cells in stems and source leaves. In comparison, Group II orthologs PtaSUT1 and PtaSUT3 were very weakly expressed in leaves. Both Group II and Group IV SUT genes were expressed in secondary stem xylem of Populus. Transgenic poplars with RNAi-suppressed PtaSUT4 exhibited increased leaf-to-stem biomass ratios, elevated sucrose content in source leaves and stems, and altered phenylpropanoid metabolism. Transcript abundance of several carbohydrate-active enzymes and phenylalanine ammonia-lyases was also altered in transgenic source leaves. Nitrogen-limitation led to a down-regulation of vacuolar invertases in all plants, which resulted in an augmentation of sucrose pooling and hexose depletion in source leaves and secondary xylem of the transgenic plants. These results are consistent with a major role for PtaSUT4 in orchestrating the intracellular partitioning, and consequently, the efflux of sucrose from source leaves and the utilization of sucrose by lateral and terminal sinks. Our findings also support the idea that PtaSUT4 modulates sucrose efflux and utilization in concert with plant N-status.
Knowledge base rule partitioning design for CLIPS
Mainardi, Joseph D.; Szatkowski, G. P.
1990-01-01
This describes a knowledge base (KB) partitioning approach to solve the problem of real-time performance using the CLIPS AI shell when containing large numbers of rules and facts. This work is funded under the joint USAF/NASA Advanced Launch System (ALS) Program as applied research in expert systems to perform vehicle checkout for real-time controller and diagnostic monitoring tasks. The Expert System advanced development project (ADP-2302) main objective is to provide robust systems responding to new data frames of 0.1 to 1.0 second intervals. The intelligent system control must be performed within the specified real-time window, in order to meet the demands of the given application. Partitioning the KB reduces the complexity of the inferencing Rete net at any given time. This reduced complexity improves performance but without undo impacts during load and unload cycles. The second objective is to produce highly reliable intelligent systems. This requires simple and automated approaches to the KB verification & validation task. Partitioning the KB reduces rule interaction complexity overall. Reduced interaction simplifies the V&V testing necessary by focusing attention only on individual areas of interest. Many systems require a robustness that involves a large number of rules, most of which are mutually exclusive under different phases or conditions. The ideal solution is to control the knowledge base by loading rules that directly apply for that condition, while stripping out all rules and facts that are not used during that cycle. The practical approach is to cluster rules and facts into associated 'blocks'. A simple approach has been designed to control the addition and deletion of 'blocks' of rules and facts, while allowing real-time operations to run freely. Timing tests for real-time performance for specific machines under R/T operating systems have not been completed but are planned as part of the analysis process to validate the design.
Zero-sum partition theorems for graphs
Y. Caro
1994-01-01
Full Text Available Let q=pn be a power of an odd prime p. We show that the vertices of every graph G can be partitioned into t(q classes V(G=⋃t=1t(qVi such that the number of edges in any induced subgraph 〈Vi〉 is divisible by q, where t(q≤32(q−1−(2(q−1−1124+98, and if q=2n, then t(q=2q−1.
Surface defects and instanton partition functions
Gaiotto, Davide; Kim, Hee-Cheol
2016-10-01
We study the superconformal index of five-dimensional SCFTs and the sphere partition function of four-dimensional gauge theories with eight supercharges in the presence of co-dimension two half-BPS defects. We derive a prescription which is valid for defects which can be given a "vortex construction", i.e. can be defined by RG flow from vortex configurations in a larger theory. We test the prescription against known results and expected dualities. We employ our prescription to develop a general computational strategy for defects defined by coupling the bulk degrees of freedom to a Gauged Linear Sigma Model living in co-dimension two.
Modular properties of full 5D SYM partition function
Qiu, Jian; Winding, Jacob; Zabzine, Maxim
2015-01-01
We study properties of the full partition function for the $U(1)$ 5D $\\mathcal{N}=2^*$ gauge theory with adjoint hypermultiplet of mass $M$. This theory is ultimately related to abelian 6D (2,0) theory. We construct the full non-perturbative partition function on toric Sasaki-Einstein manifolds by gluing flat copies of the Nekrasov partition function and we express the full partition function in terms of the generalized double elliptic gamma function $G_2^C$ associated with a certain moment map cone $C$. The answer exhibits a curious $SL(4,\\mathbb{Z})$ modular property. Finally, we propose a set of rules to construct the partition function that resembles the calculation of 5D supersymmetric partition function with the insertion of defects of various co-dimensions.
Modular properties of full 5D SYM partition function
Qiu, Jian; Tizzano, Luigi; Winding, Jacob; Zabzine, Maxim
2016-03-01
We study properties of the full partition function for the U(1) 5D N = {2}^{ast } gauge theory with adjoint hypermultiplet of mass M . This theory is ultimately related to abelian 6D (2,0) theory. We construct the full non-perturbative partition function on toric Sasaki-Einstein manifolds by gluing flat copies of the Nekrasov partition function and we express the full partition function in terms of the generalized double elliptic gamma function G 2 C associated with a certain moment map cone C. The answer exhibits a curious SL(4 , ℤ) modular property. Finally, we propose a set of rules to construct the partition function that resembles the calculation of 5d supersymmetric partition function with the insert ion of defects of various co-dimensions.
Partition Equilibrium Between Charged Membrane and Single Electrolyte Aqueous Solution
徐铜文; 杨伟华; 何柄林
2001-01-01
Ionic partition equilibrium in charged membrane immersed in solution of single electrolyte with monovalence or multi-valence is systematically investigated and several expressions are established for determination of partition coefficients. On this basis, the effects of the ratio of membrane charge density to hulk electrolyte solution concentration, the charge sign and valence of electrolyte ions and the type of membrane on the partition equilibrium were analyzed and simulated with in chosen parameters. It is revealed that ion partition is not related solely withthe respective concentrations but also definitely with the concentration ratio of fixed group to bulk solution in addition to the charge sign and the valence. For a counterion, the partition coefficient increases with this ratio and the valence; while for a coion, the partition coefficient decreases with this ratio and the valence. The theoreticalcal culations were compared with the experimental data and a good agreement was observed.
Partition Equilibrium Between Charged Membrane and Single Electrolyte Aqueous Solution
无
2001-01-01
Ionic partition equilibrium in charged membrane immersed in solution of single electrolyte with mono valence or multi-valence is systematically investigated and several expressions are established for determination of partition coefficients. On this basis, the effects of the ratio of membrane charge density to bulk electrolyte solution concentration, the charge sign and valence of electrolyte ions and the type of membrane on the partition equilibrium were analyzed and simulated within chosen parameters. It is revealed that ion partition is not related solely with the respective concentrations but also definitely with the concentration ratio of fixed group to bulk solution in addition to the charge sign and the valence. For a counterion, the partition coefficient increases with this ratio and the valence; while for a coion, the partition coefficient decreases with this ratio and the valence. The theoretical calculations were compared with the experimental data and a good agreement was observed.
Vertical partitioning of relational OLTP databases using integer programming
Amossen, Rasmus Resen
2010-01-01
A way to optimize performance of relational row store databases is to reduce the row widths by vertically partition- ing tables into table fractions in order to minimize the number of irrelevant columns/attributes read by each transaction. This pa- per considers vertical partitioning algorithms...... for relational row- store OLTP databases with an H-store-like architecture, meaning that we would like to maximize the number of single-sited transactions. We present a model for the vertical partitioning problem that, given a schema together with a vertical partitioning and a workload, estimates the costs...... (bytes read/written by storage layer access methods and bytes transferred between sites) of evaluating the workload on the given partitioning. The cost model allows for arbitrarily prioritizing load balancing of sites vs. total cost minimization. We show that finding a minimum-cost vertical partitioning...
CLASSIFICATION OF COMPLETE 5-PARTITE GRAPHS AND CHROMATICITY OF 5-PARTITE GRAPHSWITH 5n VERTICES
ZhaoHaixing; LiuRuying; ZhangShenggui
2004-01-01
For a graph G,P(G,λ)denotes the chromatic polynomial of G. Two graphs G and H are said to be chromatically equivalent,denoted by G-H,if P(G,λ)=p(H,λ). Let[G]= {H|H-G}. If [G]={G},then G is said to be chromatically unique. For a complete 5-partite graph G with 5n vertices, define θ(G)=(a(G,6)-2n+1-2n-1+5)/2n-2,where a(G,6) denotes the number of 6-independent partitions of G. In this paper, the authors show that θ(G)≥0 and determine all graphs with θ(G)= 0, 1, 2, 5/2, 7/2, 4, 17/4. By using these results the chromaticity of 5-partite graphs of the form G-S with θ(G)=0,1,2,5/2,7/2,4,17/4 is investigated,where S is a set of edges of G. Many new chromatically unique 5-partite graphs are obtained.
Partition function of nearest neighbour Ising models: Some new insights
G Nandhini; M V Sangaranarayanan
2009-09-01
The partition function for one-dimensional nearest neighbour Ising models is estimated by summing all the energy terms in the Hamiltonian for N sites. The algebraic expression for the partition function is then employed to deduce the eigenvalues of the basic 2 × 2 matrix and the corresponding Hermitian Toeplitz matrix is derived using the Discrete Fourier Transform. A new recurrence relation pertaining to the partition function for two-dimensional Ising models in zero magnetic field is also proposed.
Partitioning and lipophilicity in quantitative structure-activity relationships.
Dearden, J. C.
1985-01-01
The history of the relationship of biological activity to partition coefficient and related properties is briefly reviewed. The dominance of partition coefficient in quantitation of structure-activity relationships is emphasized, although the importance of other factors is also demonstrated. Various mathematical models of in vivo transport and binding are discussed; most of these involve partitioning as the primary mechanism of transport. The models describe observed quantitative structure-ac...
THE ALGORITHMS OF AN INTEGER PARTITIONING WITH ITS APPLICATIONS
曹立明; 周强
1994-01-01
In the light of the ideals of Artificial Intelligence(AI) , three algorithms of an integer partitioning have been given in this paper:generate and test algorithm ,and two heuristic algorithms about forward partition and backward partition. PROLOG has been used to describe algorithms, it is reasonable, direct and simple. In the sight of describing algorithms ,it is a new and valid try. At last, some intresting applications of the algorithms mentioned in the paper have been presented.
Differential Evolution and Particle Swarm Optimization for Partitional Clustering
Krink, Thiemo; Paterlini, Sandra
2006-01-01
Many partitional clustering algorithms based on genetic algorithms (GA) have been proposed to tackle the problem of finding the optimal partition of a data set. Very few studies considered alternative stochastic search heuristics other than GAs or simulated annealing. Two promising algorithms...... to implement and requires hardly any parameter tuning compared to substantial tuning for GAs and PSOs. Our study shows that DE rather than GAs should receive primary attention in partitional clustering algorithms....
Method for chemical amplification based on fluid partitioning in an immiscible liquid
Anderson, Brian L.; Colston, Bill W.; Elkin, Christopher J.
2017-02-28
A system for nucleic acid amplification of a sample comprises partitioning the sample into partitioned sections and performing PCR on the partitioned sections of the sample. Another embodiment of the invention provides a system for nucleic acid amplification and detection of a sample comprising partitioning the sample into partitioned sections, performing PCR on the partitioned sections of the sample, and detecting and analyzing the partitioned sections of the sample.
Apparatus for chemical amplification based on fluid partitioning in an immiscible liquid
Anderson, Brian L [Lodi, CA; Colston, Bill W [San Ramon, CA; Elkin, Christopher J [San Ramon, CA
2012-05-08
A system for nucleic acid amplification of a sample comprises partitioning the sample into partitioned sections and performing PCR on the partitioned sections of the sample. Another embodiment of the invention provides a system for nucleic acid amplification and detection of a sample comprising partitioning the sample into partitioned sections, performing PCR on the partitioned sections of the sample, and detecting and analyzing the partitioned sections of the sample.
Partitioning kinetic energy during freewheeling wheelchair maneuvers.
Medola, Fausto O; Dao, Phuc V; Caspall, Jayme J; Sprigle, Stephen
2014-03-01
This paper describes a systematic method to partition the kinetic energy (KE) of a free-wheeling wheelchair. An ultralightweight rigid frame wheelchair was instrumented with two axle-mounted encoders and data acquisition equipment to accurately measure the velocity of the drive wheels. A mathematical model was created combining physical specifications and geometry of the wheelchair and its components. Two able-bodied subjects propelled the wheelchair over four courses that involved straight and turning maneuvers at differing speeds. The KE of the wheelchair was divided into three components: translational, rotational, and turning energy. This technique was sensitive to the changing contributions of the three energy components across maneuvers. Translational energy represented the major component of total KE in all maneuvers except a zero radius turn in which turning energy was dominant. Both translational and rotational energies are directly related to wheelchair speed. Partitioning KE offers a useful means of investigating the dynamics of a moving wheelchair. The described technique permits analysis of KE imparted to the wheelchair during maneuvers involving changes in speed and direction, which are most representative of mobility in everyday life. This technique can be used to study the effort required to maneuver different types and configurations of wheelchairs.
Approximation Algorithms for Submodular Multiway Partition
Chekuri, Chandra
2011-01-01
We study algorithms for the Submodular Multiway Partition problem (SubMP). An instance of SubMP consists of a finite ground set $V$, a subset of $k$ elements $S = \\{s_1,s_2,...,s_k\\}$ called terminals, and a non-negative submodular set function $f:2^V\\rightarrow \\mathbb{R}_+$ on $V$ provided as a value oracle. The goal is to partition $V$ into $k$ sets $A_1,...,A_k$ such that for $1 \\le i \\le k$, $s_i \\in A_i$ and $\\sum_{i=1}^k f(A_i)$ is minimized. SubMP generalizes some well-known problems such as the Multiway Cut problem in graphs and hypergraphs, and the Node-weighed Multiway Cut problem in graphs. SubMP for arbitrarysubmodular functions (instead of just symmetric functions) was considered by Zhao, Nagamochi and Ibaraki \\cite{ZhaoNI05}. Previous algorithms were based on greedy splitting and divide and conquer strategies. In very recent work \\cite{ChekuriE11} we proposed a convex-programming relaxation for SubMP based on the Lov\\'asz-extension of a submodular function and showed its applicability for some ...
Gait Partitioning Methods: A Systematic Review
Juri Taborri
2016-01-01
Full Text Available In the last years, gait phase partitioning has come to be a challenging research topic due to its impact on several applications related to gait technologies. A variety of sensors can be used to feed algorithms for gait phase partitioning, mainly classifiable as wearable or non-wearable. Among wearable sensors, footswitches or foot pressure insoles are generally considered as the gold standard; however, to overcome some inherent limitations of the former, inertial measurement units have become popular in recent decades. Valuable results have been achieved also though electromyography, electroneurography, and ultrasonic sensors. Non-wearable sensors, such as opto-electronic systems along with force platforms, remain the most accurate system to perform gait analysis in an indoor environment. In the present paper we identify, select, and categorize the available methodologies for gait phase detection, analyzing advantages and disadvantages of each solution. Finally, we comparatively examine the obtainable gait phase granularities, the usable computational methodologies and the optimal sensor placements on the targeted body segments.
Ferrous iron partitioning in the lower mantle
Muir, Joshua M. R.; Brodholt, John P.
2016-08-01
We used density functional theory (DFT) to examine the partitioning of ferrous iron between periclase and bridgmanite under lower mantle conditions. To study the effects of the three major variables - pressure, temperature and concentration - these have been varied from 0 to 150 GPa, from 1000 to 4000 K and from 0 to 100% total iron content. We find that increasing temperature increases KD, increasing iron concentration decreases KD, while pressure can both increase and decrease KD. We find that KD decreases slowly from about 0.32 to 0.06 with depth under lower mantle conditions. We also find that KD increases sharply to 0.15 in the very lowermost mantle due to the strong temperature increases near the CMB. Spin transitions have a large effect on the activity of ferropericlase which causes KD to vary with pressure in a peak-like fashion. Despite the apparently large changes in KD through the mantle, this actually results in relatively small changes in total iron content in the two phases, with XFefp ranging from about 0.20 to 0.35, before decreasing again to about 0.28 at the CMB, and XFebd has a pretty constant value of about 0.04-0.07 throughout the lower mantle. For the very high Fe concentrations suggested for ULVZs, Fe partitions very strongly into ferropericlase.
Strictly nonnegative tensors and nonnegative tensor partition
HU ShengLong; HUANG ZhengHai; QI LiQun
2014-01-01
We introduce a new class of nonnegative tensors—strictly nonnegative tensors.A weakly irreducible nonnegative tensor is a strictly nonnegative tensor but not vice versa.We show that the spectral radius of a strictly nonnegative tensor is always positive.We give some necessary and su？cient conditions for the six wellconditional classes of nonnegative tensors,introduced in the literature,and a full relationship picture about strictly nonnegative tensors with these six classes of nonnegative tensors.We then establish global R-linear convergence of a power method for finding the spectral radius of a nonnegative tensor under the condition of weak irreducibility.We show that for a nonnegative tensor T,there always exists a partition of the index set such that every tensor induced by the partition is weakly irreducible;and the spectral radius of T can be obtained from those spectral radii of the induced tensors.In this way,we develop a convergent algorithm for finding the spectral radius of a general nonnegative tensor without any additional assumption.Some preliminary numerical results show the feasibility and effectiveness of the algorithm.
Inversion of hematocrit partition at microfluidic bifurcations.
Shen, Zaiyi; Coupier, Gwennou; Kaoui, Badr; Polack, Benoît; Harting, Jens; Misbah, Chaouqi; Podgorski, Thomas
2016-05-01
Partitioning of red blood cells (RBCs) at the level of bifurcations in the microcirculatory system affects many physiological functions yet it remains poorly understood. We address this problem by using T-shaped microfluidic bifurcations as a model. Our computer simulations and in vitro experiments reveal that the hematocrit (ϕ0) partition depends strongly on RBC deformability, as long as ϕ0<20% (within the normal range in microcirculation), and can even lead to complete deprivation of RBCs in a child branch. Furthermore, we discover a deviation from the Zweifach-Fung effect which states that the child branch with lower flow rate recruits less RBCs than the higher flow rate child branch. At small enough ϕ0, we get the inverse scenario, and the hematocrit in the lower flow rate child branch is even higher than in the parent vessel. We explain this result by an intricate up-stream RBC organization and we highlight the extreme dependence of RBC transport on geometrical and cell mechanical properties. These parameters can lead to unexpected behaviors with consequences on the microcirculatory function and oxygen delivery in healthy and pathological conditions.
Gait Partitioning Methods: A Systematic Review
Taborri, Juri; Palermo, Eduardo; Rossi, Stefano; Cappa, Paolo
2016-01-01
In the last years, gait phase partitioning has come to be a challenging research topic due to its impact on several applications related to gait technologies. A variety of sensors can be used to feed algorithms for gait phase partitioning, mainly classifiable as wearable or non-wearable. Among wearable sensors, footswitches or foot pressure insoles are generally considered as the gold standard; however, to overcome some inherent limitations of the former, inertial measurement units have become popular in recent decades. Valuable results have been achieved also though electromyography, electroneurography, and ultrasonic sensors. Non-wearable sensors, such as opto-electronic systems along with force platforms, remain the most accurate system to perform gait analysis in an indoor environment. In the present paper we identify, select, and categorize the available methodologies for gait phase detection, analyzing advantages and disadvantages of each solution. Finally, we comparatively examine the obtainable gait phase granularities, the usable computational methodologies and the optimal sensor placements on the targeted body segments. PMID:26751449
Inversion of hematocrit partition at microfluidic bifurcations
Shen, Zaiyi; Kaoui, Badr; Polack, Benoît; Harting, Jens; Misbah, Chaouqi; Podgorski, Thomas
2016-01-01
Partitioning of red blood cells (RBCs) at the level of bifurcations in the microcirculatory system affects many physiological functions yet it remains poorly understood. We address this problem by using T-shaped microfluidic bifurcations as a model. Our computer simulations and in vitro experiments reveal that the hematocrit ($\\phi_0$) partition depends strongly on RBC deformability, as long as $\\phi_0 <20$% (within the normal range in microcirculation), and can even lead to complete deprivation of RBCs in a child branch. Furthermore, we discover a deviation from the Zweifach-Fung effect which states that the child branch with lower flow rate recruits less RBCs than the higher flow rate child branch. At small enough $\\phi_0$, we get the inverse scenario, and the hematocrit in the lower flow rate child branch is even higher than in the parent vessel. We explain this result by an intricate up-stream RBC organization and we highlight the extreme dependence of RBC transport on geometrical and cell mechanical p...
New parallel SOR method by domain partitioning
Xie, Dexuan [Courant Inst. of Mathematical Sciences New York Univ., NY (United States)
1996-12-31
In this paper, we propose and analyze a new parallel SOR method, the PSOR method, formulated by using domain partitioning together with an interprocessor data-communication technique. For the 5-point approximation to the Poisson equation on a square, we show that the ordering of the PSOR based on the strip partition leads to a consistently ordered matrix, and hence the PSOR and the SOR using the row-wise ordering have the same convergence rate. However, in general, the ordering used in PSOR may not be {open_quote}consistently ordered{close_quotes}. So, there is a need to analyze the convergence of PSOR directly. In this paper, we present a PSOR theory, and show that the PSOR method can have the same asymptotic rate of convergence as the corresponding sequential SOR method for a wide class of linear systems in which the matrix is {open_quotes}consistently ordered{close_quotes}. Finally, we demonstrate the parallel performance of the PSOR method on four different message passing multiprocessors (a KSR1, the Intel Delta, an Intel Paragon and an IBM SP2), along with a comparison with the point Red-Black and four-color SOR methods.
Investigations into children's acquisition of the partitive structure
Helen Stickney
2008-02-01
Full Text Available Recent literature suggests that children’s acquisition of DP is a process of gradual feature acquisition (Roeper 2006. This study looks at the acquisition of DP’s barrier feature from the perspective of the acquisition of the syntax of the English partitive construction. This study explores the contrast between the partitive and the pseudopartitive. An adjective preceding the partitive cannot modify the lower noun, but it can in an equivalent pseudopartitive construction. This study shows that children aged 3-5 do not make this distinction, suggesting that children don’t recognize partitive-internal DP as a barrier to adjectival modification.
Aspects of system modelling in Hardware/Software partitioning
Knudsen, Peter Voigt; Madsen, Jan
1996-01-01
This paper addresses fundamental aspects of system modelling and partitioning algorithms in the area of Hardware/Software Codesign. Three basic system models for partitioning are presented and the consequences of partitioning according to each of these are analyzed. The analysis shows...... the importance of making a clear distinction between the model used for partitioning and the model used for evaluation It also illustrates the importance of having a realistic hardware model such that hardware sharing can be taken into account. Finally, the importance of integrating scheduling and allocation...
S^3/Z_n partition function and dualities
Imamura, Yosuke
2012-01-01
We investigate S^3/Z_n partition function of N = 2 supersymmetric gauge theories. A gauge theory on the orbifold has degenerate vacua specified by the holonomy. The partition function is obtained by summing up the contributions of saddle points with different holonomies. An appropriate choice of the phase of each contribution is essential to obtain the partition function. We determine the relative phases in the holonomy sum in a few examples by using duality to non-gauge theories. In the case of odd n the phase factors can be absorbed by modifying a single function appearing in the partition function.
Deep eutectic solvents in countercurrent and centrifugal partition chromatography.
Roehrer, Simon; Bezold, Franziska; García, Eva Marra; Minceva, Mirjana
2016-02-19
Deep eutectic solvents (DESs) were evaluated as solvents in centrifugal partition chromatography, a liquid-liquid chromatography separation technology. To this end, the partition coefficients of ten natural compounds of different hydrophobicity were determined in non-aqueous biphasic systems containing DES. The influence of the composition of DESs and the presence of water in the biphasic system on the partition coefficient were also examined. In addition, several process relevant physical properties of the biphasic system, such as the density and viscosity of the phases, were measured. A mixture of three to four hydrophobic compounds was successfully separated in a centrifugal partition extractor using a heptane/ethanol/DES biphasic system.
Molecular partitioning based on the kinetic energy density
Noorizadeh, Siamak
2016-05-01
Molecular partitioning based on the kinetic energy density is performed to a number of chemical species, which show non-nuclear attractors (NNA) in their gradient maps of the electron density. It is found that NNAs are removed using this molecular partitioning and although the virial theorem is not valid for all of the basins obtained in the being used AIM, all of the atoms obtained using the new approach obey this theorem. A comparison is also made between some atomic topological parameters which are obtained from the new partitioning approach and those calculated based on the electron density partitioning.
Liekhus, K.; Grandy, J.; Chambers, A. [and others
1997-03-01
A preliminary study of toxic metals and radionuclide partitioning during high-temperature processing of mixed waste has been conducted during Fiscal Year 1996 within the Environmental Management Technology Evaluation Project. The study included: (a) identification of relevant partitioning mechanisms that cause feed material to be distributed between the solid, molten, and gas phases within a thermal treatment system; (b) evaluations of existing test data from applicable demonstration test programs as a means to identify and understand elemental and species partitioning; and, (c) evaluation of theoretical or empirical partitioning models for use in predicting elemental or species partitioning in a thermal treatment system. This preliminary study was conducted to identify the need for and the viability of developing the tools capable of describing and predicting toxic metals and radionuclide partitioning in the most applicable mixed waste thermal treatment processes. This document presents the results and recommendations resulting from this study that may serve as an impetus for developing and implementing these predictive tools.
Gális, Ivan; Simek, Petr; Van Onckelen, Henri A; Kakiuchi, Yasutaka; Wabiko, Hiroetsu
2002-08-01
We previously reported that the Agrobacterium tumefaciens C58-6b gene confers resistance to growth-inhibitory levels of exogenously applied N(6)-benzyladenine (BA, cytokinin) in transgenic tobacco (Nicotiana tabacum) seedlings. Here, we found that intracellular levels of indoleacetic acid (IAA, auxin) increased in transgenics but declined in wild-type seedlings upon BA treatment. Since exogenously supplied 1-naphthalene acetic acid (NAA), a stable synthetic auxin, counteracted the growth inhibition of wild-type seedlings by BA, we suggest that BA-induced growth inhibition in wild-type seedlings occurs, at least in part, as a result of intracellular IAA deficiency. Further HPLC analysis of cell extracts from BA-treated seedlings revealed that a fluorescent compound, later identified as the phenylpropanoid, scopolin, and the major phenolic compound, chlorogenic acid, accumulated earlier in transgenics than in wild-type seedlings. Gene transcripts encoding phenylalanine ammonia-lyase, cinnamate 4-hydroxylase, and 4-coumarate:CoA ligase, which are responsible for the early steps of phenylpropanoid biosynthesis, accumulated earlier and to higher levels in transgenics than in wild-type seedlings as determined by Northern hybridization analysis, thus accounting for the early accumulation of scopolin and chlorogenic acid in transgenics. As some phenolic compounds, including chlorogenic acid and scopoletin (aglycon of scopolin) are suggested to inhibit IAA catabolism, we further propose that C58-6b gene expression protects IAA from degradation by inducing the early phenylpropanoid pathway.
Abdollahi Mandoulakani, Babak; Eyvazpour, Elham; Ghadimzadeh, Morteza
2017-03-30
Basil (Ocimum basilicum L.), a medicinal plant of the Lamiaceae family, is used in traditional medicine; its essential oil is a rich source of phenylpropanoids. Methylchavicol and methyleugenol are the most important constituents of basil essential oil. Drought stress is proposed to enhance the essential oil composition and expression levels of the genes involved in its biosynthesis. In the current investigation, an experiment based on a completely randomized design (CRD) with three replications was conducted in the greenhouse to study the effect of drought stress on the expression level of four genes involved in the phenylpropanoid biosynthesis pathway in O. basilicum c.v. Keshkeni luvelou. The genes studied were chavicol O-methyl transferase (CVOMT), eugenol O-methyl transferase (EOMT), cinnamate 4-hydroxylase (C4H), 4-coumarate coA ligase (4CL), and cinnamyl alcohol dehydrogenase (CAD). The effect of drought stress on the essential oil compounds and their relationship with the expression levels of the studied genes were also investigated. Plants were subjected to levels of 100%, 75%, and 50% of field capacity (FC) at the 6-8 leaf stage. Essential oil compounds were identified by gas chromatography/mass spectrometry (GC-MS) at flowering stage and the levels of gene expression were determind by real time PCR in plant leaves at the same stage. Results showed that drought stress increased the amount of methylchavicol, methyleugenol, β-Myrcene and α-bergamotene. The maximum amount of these compounds was observed at 50% FC. Real-time PCR analysis revealed that severe drought stress (50% FC) increased the expression level of CVOMT and EOMT by about 6.46 and 46.33 times, respectively, whereas those of CAD relatively remained unchanged. The expression level of 4CL and C4H reduced under drought stress conditions. Our results also demonstrated that changes in the expression levels of CVOMT and EOMT are significantly correlated with methylchavicol (r = 0.94, P ≤ 0
大高良姜根茎中的两个新苯丙素化合物%Two new phenylpropanoids isolated from the rhizomes of Alpinia galanga
赵玲; 陈旅翼; 梁敬钰
2012-01-01
AIM:To study the chemical constituents and bioactivity of the rhizomes of Alpinia galangal Willd.(Zingiberaceae).METHODS:The chemical constituents were isolated using various chromatographic methods and crystallization,and the chemical structures were elucidated on the basis of spectral analysis.In addition,cytotoxic activities toward four tumor cell lines (HepG2,EC109,A549 and Vero) were tested by MTT method.RESULTS:Six phenylpropanoids were obtained and their structures were identified as (S)-l'-ethoxy chavicol acetate (1),(E)-4-acetoxy cinnamyl ethyl ether (2),(E)-4-hydroxycinnamaldehyde (3),(E)-4-acetoxy cinnamyl alcohol (4),4-acetoxy cinnamyl acetate (5),and 4,4'[(2E,2'E)-bis(prop-2-ene)-1,1'-oxy]-diphenyl-7,7'-diacetate (6).CONCLUSION:Compounds 1 and 2 were two new phenylpropanoids.Compound 5 shows selective cytotoxic activity on human lung adenocarcinoma cell A549 (IC50 19.35 μmol·L-1).%目的:研究大高良姜的化学成分及活性.方法:运用各种柱色谱方法和重结晶手段分离纯化化合物,并通过波谱数据鉴定化合物结构.此外,运用MTT法测定了化合物对四种肿瘤细胞株(HepG2,EC109,A549和Vero)的细胞毒活性.结果:从大高良姜中分离得到6个苯丙素类化合物,其结构分别鉴定为(S)-1'-ethoxy chavicol acetate (1),(E)-4-acetoxy cinnamyl ethyl ether (2),(E)-4-hydroxy-cinnamaldehyde (3),(E)-4-acetoxy cinnamyl alcohol (4),4-acetoxy cinnamyl acetate (5)和4,4'[(2E,2'E)-bis(prop-2-ene)-1,1'-oxy]-diphenyl-7,7'-diacetate (6).结论:化合物1和2为新化合物.化合物5对A549肿瘤细胞有一定的细胞毒活性,IC50为19.35 μmol·L-1.
Pepper injury and partitioning response to ozone
Bennett, J.P.; Oshima, R.J.; Lippert, L.F.
1977-08-01
Pepper plants (Capsicum annuum L.) grown in containers and exposed intermittently to 0.12 or 0.20 ppm ozone (O/sub 3/) while they grew to final yield, increased in plant height and total number of leaves in spite of the formation of chlorotic leaves. On an absolute basis, root, stem and leaf dry weights were not significantly affected by O/sub 3/, but fruit dry matter fell by as much as 54%. However, on a relative basis, dry matter partitioning to fruit was not constant and a significant alteration of the expected dry matter distribution was observed in the O/sub 3/ treatment. O/sub 3/ also significantly accentuated the inverse relationship between crown fruit and leaf production. A conceptual model for whole plant response to O/sub 3/ was developed.
Advanced Aqueous Separation Systems for Actinide Partitioning
Nash, Kenneth L.; Clark, Sue; Meier, G Patrick; Alexandratos, Spiro; Paine, Robert; Hancock, Robert; Ensor, Dale
2012-03-21
One of the most challenging aspects of advanced processing of spent nuclear fuel is the need to isolate transuranium elements from fission product lanthanides. This project expanded the scope of earlier investigations of americium (Am) partitioning from the lanthanides with the synthesis of new separations materials and a centralized focus on radiochemical characterization of the separation systems that could be developed based on these new materials. The primary objective of this program was to explore alternative materials for actinide separations and to link the design of new reagents for actinide separations to characterizations based on actinide chemistry. In the predominant trivalent oxidation state, the chemistry of lanthanides overlaps substantially with that of the trivalent actinides and their mutual separation is quite challenging.
Exometabolite niche partitioning among sympatric soil bacteria
Baran, Richard; Brodie, Eoin L.; Mayberry-Lewis, Jazmine; Hummel, Eric; Da Rocha, Ulisses Nunes; Chakraborty, Romy; Bowen, Benjamin P.; Karaoz, Ulas; Cadillo-Quiroz, Hinsby; Garcia-Pichel, Ferran; Northen, Trent R.
2015-01-01
Soils are arguably the most microbially diverse ecosystems. Physicochemical properties have been associated with the maintenance of this diversity. Yet, the role of microbial substrate specialization is largely unexplored since substrate utilization studies have focused on simple substrates, not the complex mixtures representative of the soil environment. Here we examine the exometabolite composition of desert biological soil crusts (biocrusts) and the substrate preferences of seven biocrust isolates. The biocrust's main primary producer releases a diverse array of metabolites, and isolates of physically associated taxa use unique subsets of the complex metabolite pool. Individual isolates use only 13−26% of available metabolites, with only 2 out of 470 used by all and 40% not used by any. An extension of this approach to a mesophilic soil environment also reveals high levels of microbial substrate specialization. These results suggest that exometabolite niche partitioning may be an important factor in the maintenance of microbial diversity. PMID:26392107
Generalization of the partitioning of shannon diversity.
Eric Marcon
Full Text Available Traditional measures of diversity, namely the number of species as well as Simpson's and Shannon's indices, are particular cases of Tsallis entropy. Entropy decomposition, i.e. decomposing gamma entropy into alpha and beta components, has been previously derived in the literature. We propose a generalization of the additive decomposition of Shannon entropy applied to Tsallis entropy. We obtain a self-contained definition of beta entropy as the information gain brought by the knowledge of each community composition. We propose a correction of the estimation bias allowing to estimate alpha, beta and gamma entropy from the data and eventually convert them into true diversity. We advocate additive decomposition in complement of multiplicative partitioning to allow robust estimation of biodiversity.
Discrete and Continuous Models for Partitioning Problems
Lellmann, Jan
2013-04-11
Recently, variational relaxation techniques for approximating solutions of partitioning problems on continuous image domains have received considerable attention, since they introduce significantly less artifacts than established graph cut-based techniques. This work is concerned with the sources of such artifacts. We discuss the importance of differentiating between artifacts caused by discretization and those caused by relaxation and provide supporting numerical examples. Moreover, we consider in depth the consequences of a recent theoretical result concerning the optimality of solutions obtained using a particular relaxation method. Since the employed regularizer is quite tight, the considered relaxation generally involves a large computational cost. We propose a method to significantly reduce these costs in a fully automatic way for a large class of metrics including tree metrics, thus generalizing a method recently proposed by Strekalovskiy and Cremers (IEEE conference on computer vision and pattern recognition, pp. 1905-1911, 2011). © 2013 Springer Science+Business Media New York.
Recursive Partitioning Method on Competing Risk Outcomes
Xu, Wei; Che, Jiahua; Kong, Qin
2016-01-01
In some cancer clinical studies, researchers have interests to explore the risk factors associated with competing risk outcomes such as recurrence-free survival. We develop a novel recursive partitioning framework on competing risk data for both prognostic and predictive model constructions. We define specific splitting rules, pruning algorithm, and final tree selection algorithm for the competing risk tree models. This methodology is quite flexible that it can corporate both semiparametric method using Cox proportional hazards model and parametric competing risk model. Both prognostic and predictive tree models are developed to adjust for potential confounding factors. Extensive simulations show that our methods have well-controlled type I error and robust power performance. Finally, we apply both Cox proportional hazards model and flexible parametric model for prognostic tree development on a retrospective clinical study on oropharyngeal cancer patients. PMID:27486300
Partitioned quantum cellular automata are intrinsically universal
Arrighi, Pablo
2010-01-01
There have been several non-axiomatic approaches taken to define Quantum Cellular Automata (QCA). Partitioned QCA (PQCA) are the most canonical of these non-axiomatic definitions. In this work we show that any QCA can be put into the form of a PQCA. Our construction reconciles all the non-axiomatic definitions of QCA, showing that they can all simulate one another, and hence that they are all equivalent to the axiomatic definition. This is achieved by defining generalised n-dimensional intrinsic simulation, which brings the computer science based concepts of simulation and universality closer to theoretical physics. The result is not only an important simplification of the QCA model, it also plays a key role in the identification of a minimal n-dimensional intrinsically universal QCA.
Metal separations using aqueous biphasic partitioning systems
Chaiko, D.J.; Zaslavsky, B.; Rollins, A.N.; Vojta, Y.; Gartelmann, J.; Mego, W. [Argonne National Lab., IL (United States). Chemical Technology Div.
1996-05-01
Aqueous biphasic extraction (ABE) processes offer the potential for low-cost, highly selective separations. This countercurrent extraction technique involves selective partitioning of either dissolved solutes or ultrafine particulates between two immiscible aqueous phases. The extraction systems that the authors have studied are generated by combining an aqueous salt solution with an aqueous polymer solution. They have examined a wide range of applications for ABE, including the treatment of solid and liquid nuclear wastes, decontamination of soils, and processing of mineral ores. They have also conducted fundamental studies of solution microstructure using small angle neutron scattering (SANS). In this report they review the physicochemical fundamentals of aqueous biphase formation and discuss the development and scaleup of ABE processes for environmental remediation.
Smoothed analysis of partitioning algorithms for Euclidean functionals
Bläser, Markus; Manthey, Bodo; Rao, B.V. Raghavendra
2013-01-01
Euclidean optimization problems such as TSP and minimum-length matching admit fast partitioning algorithms that compute near-optimal solutions on typical instances. In order to explain this performance, we develop a general framework for the application of smoothed analysis to partitioning algorithm
Smoothed analysis of partitioning algorithms for Euclidean functionals
Bläser, Markus; Manthey, Bodo; Rao, B.V. Raghavendra; Dehne, F.; Iacono, J.; Sack, J.-R.
2011-01-01
Euclidean optimization problems such as TSP and minimum-length matching admit fast partitioning algorithms that compute near-optimal solutions on typical instances. We develop a general framework for the application of smoothed analysis to partitioning algorithms for Euclidean optimization problems.
Dynamic State Space Partitioning for External Memory Model Checking
Evangelista, Sami; Kristensen, Lars Michael
2009-01-01
We describe a dynamic partitioning scheme usable by model checking techniques that divide the state space into partitions, such as most external memory and distributed model checking algorithms. The goal of the scheme is to reduce the number of transitions that link states belonging to different...
Matrix models for β-ensembles from Nekrasov partition functions
Sułkowski, P.
2010-01-01
We relate Nekrasov partition functions, with arbitrary values of ∊ 1, ∊ 2 parameters, to matrix models for β-ensembles. We find matrix models encoding the instanton part of Nekrasov partition functions, whose measure, to the leading order in ∊ 2 expansion, is given by the Vandermonde determinant to
Facet-defining inequalities for the simple graph partitioning polytope
Sørensen, Michael Malmros
2007-01-01
The simple graph partitioning problem is to partition an edge-weighted graph into mutually node-disjoint subgraphs, each containing at most b nodes, such that the sum of the weights of all edges in the subgraphs is maximal. In this paper we provide several classes of facet-defining inequalities...
Predicting blood:air partition coefficients using basic physicochemical properties
Buist, H.E.; Wit-Bos, L. de; Bouwman, T.; Vaes, W.H.J.
2012-01-01
Quantitative Property Property Relationships (QPPRs) for human and rat blood:air partition coefficients (PBAs) have been derived, based on vapour pressure (Log(VP)), the octanol:water partition coefficient (Log(K_OW)) and molecular weight (MW), using partial least squares multilinear modelling. Thes
REE and Strontium Partition Coefficients for Nakhla Pyroxenes
Oe, K.; McKay, G.; Le, L.
2001-01-01
We present new partition coefficients for REE and Sr determined using a synthetic melt that crystallizes pyroxenes very similar in composition to Nakhla pyroxene cores. We believe these are the most appropriate partition coefficients to use in studying Nakhla Additional information is contained in the original extended abstract..
Superconformal indices and partition functions for supersymmetric field theories
Gahramanov, I.B. [Deutsches Elektronen-Synchrotron (DESY), Hamburg (Germany); Humboldt-Universitaet, Berlin (Germany). Inst. fuer Physik; Vartanov, G.S. [Deutsches Elektronen-Synchrotron (DESY), Hamburg (Germany)
2012-12-15
Recently there was a substantial progress in understanding of supersymmetric theories (in particular, their BPS spectrum) in space-times of different dimensions due to the exact computation of superconformal indices and partition functions using localization method. Here we discuss a connection of 4d superconformal indices and 3d partition functions using a particular example of supersymmetric theories with matter in antisymmetric representation.
Partition Equilibrium Always Exists in Resource Selection Games
Anshelevich, Elliot; Caskurlu, Bugra; Hate, Ameya
We consider the existence of Partition Equilibrium in Resource Selection Games. Super-strong equilibrium, where no subset of players has an incentive to change their strategies collectively, does not always exist in such games. We show, however, that partition equilibrium (introduced in [4] to model coalitions arising in a social context) always exists in general resource selection games, as well as how to compute it efficiently. In a partition equilibrium, the set of players has a fixed partition into coalitions, and the only deviations considered are by coalitions that are sets in this partition. Our algorithm to compute a partition equilibrium in any resource selection game (i.e., load balancing game) settles the open question from [4] about existence of partition equilibrium in general resource selection games. Moreover, we show how to always find a partition equilibrium which is also a Nash equilibrium. This implies that in resource selection games, we do not need to sacrifice the stability of individual players when forming solutions stable against coalitional deviations. In addition, while super-strong equilibrium may not exist in resource selection games, we show that its existence can be decided efficiently, and how to find one if it exists.
Polyhedral Computations for the Simple Graph Partitioning Problem
Sørensen, Michael Malmros
The simple graph partitioning problem is to partition an edge-weighted graph into mutually disjoint subgraphs, each containing no more than b nodes, such that the sum of the weights of all edges in the subgraphs is maximal. In this paper we present a branch-and-cut algorithm for the problem that ...
Combining search space partition and search Space partition and abstraction for LTL model checking
无
2007-01-01
The state space explosion problem is still the key obstacle for applying model checking to systems of industrial size.Abstraction-based methods have been particularly successful in this regard.This paper presents an approach based on refinement of search space partition and abstraction which combines these two techniques for reducing the complexity of model checking.The refinement depends on the representation of each portion of search space. Especially, search space can be refined stepwise to get a better reduction. As reported in the case study, the Integration of search space partition and abstraction improves the efficiencyof verification with respect to the requirement of memory and obtains significant advantage over the use of each of them in isolation.
Nutrient partitioning and seedling development in the genus Leucaena
Dovel, R.L.
1987-01-01
Slow establishment of the genus Leucaena from seed has been attributed to law seedling vigor and late nodulation. Observation of early seedling growth indicated that partitioning of a large proportion of resources to the root of young Leucaena seedlings could account, in part, for the slow initial shoot growth observed in this genus. Therefore, a series of experiments were conducted to examine the partitioning of stored seed reserves, photosynthate, and nitrogen in developing Leucaena seedlings. The effects of nodulation and nitrogen fertilization on partitioning of nutrients in the seedling were also examined. Seed reserves were initially used for radicle growth in dark grown seedlings; however, partitioning soon shifted to the hypocotyl. By four days after imbibition, hypocotyl weight exceeded radicle weight in both species tested (L. leucocephala and L. retusa), at all temperatures above 20/sup 0/C. Two experiments were conducted examining the carbon partitioning of L. leucocephala cultivar K-8 using /sup 14/CO/sub 2/ pulse labeling techniques.
APPROACH FOR MODULE PARTITION OF BLOCKS IN SHIPBUILDING
TENG Xiaoyan; KONG Fankai; ZHANG Jiatai
2008-01-01
To manage the complexities of hull module partitions, a new approach to the partitions of hierarchical modules for shipbuilding is proposed. Based on the assembly and manufacture process, the approach determines the hierarchy and basis of the module partition first, and then according to the type of connection between the parts of the block module, the degree of membership for the rational connection is gained and the fuzzy relation matrix between different parts is then established. The fuzzy clustering technique is used to partition the modules, and then the method of fuzzy comprehensive assessment is used to choose a relative reasonable scheme. A case study has been conducted, which proves that the approach is feasible and applicable; Especially it obtains the sub-module partition, which sets up the shipbuilding process at a higher-level assembly and has offered effective tools for the modular ship design.
On Efficient Data Reduction for Network Partition Forecasting in WSNs
Faisal Karim Shaikh
2011-04-01
Full Text Available WSNs (Wireless Sensor Networks are generally deployed for long-lived missions. However, they rely on finite energy resources which lead to network partitioning. Network partitioning limits the dependability of WSN by making relevant spatial regions disconnected thus requiring the maintenance of the network. The network maintenance necessitates early warning and consequently forecasting of the network partitioning such that some early action can be taken to mitigate the problem. There exist approaches allowing for detection of network partitioning but none for its forecasting. We present an efficient approach for a proactive network ParFor (Partition Forecasting based on energy maps. ParFor implements spatial and temporal suppression mechanisms such that from energy weak regions only a few nodes report short alarms to the sink. Using these alarms the forecasting is done centrally at the sink. Using simulations we highlight the efficiency and accuracy of ParFor.
Dominant partition method. [based on a wave function formalism
Dixon, R. M.; Redish, E. F.
1979-01-01
By use of the L'Huillier, Redish, and Tandy (LRT) wave function formalism, a partially connected method, the dominant partition method (DPM) is developed for obtaining few body reductions of the many body problem in the LRT and Bencze, Redish, and Sloan (BRS) formalisms. The DPM maps the many body problem to a fewer body one by using the criterion that the truncated formalism must be such that consistency with the full Schroedinger equation is preserved. The DPM is based on a class of new forms for the irreducible cluster potential, which is introduced in the LRT formalism. Connectivity is maintained with respect to all partitions containing a given partition, which is referred to as the dominant partition. Degrees of freedom corresponding to the breakup of one or more of the clusters of the dominant partition are treated in a disconnected manner. This approach for simplifying the complicated BRS equations is appropriate for physical problems where a few body reaction mechanism prevails.
Discrete Partitioning and Coverage Control for Gossiping Robots
Durham, Joseph W; Frasca, Paolo; Bullo, Francesco
2010-01-01
We propose distributed algorithms to automatically deploy a group of mobile robots to partition and provide coverage of a non-convex environment. To handle arbitrary non-convex environments, we represent them as connected graphs. Our partitioning and coverage algorithm requires only short-range, unreliable pairwise "gossip" communication among the agents. The algorithm has two components: (1) a motion protocol to ensure that each robot communicates with its neighbors at least sporadically, and (2) a pairwise partitioning rule to update territory ownership whenever two robots communicate. By studying an appropriate dynamical system on the space of partitions, we show that territory ownership converges to a centroidal Voronoi partition in finite time. Additionally, we characterize the scalability properties for the algorithm and describe how it can be implemented on robots with limited computational resources. Finally, we report on large-scale simulations in complex environments and hardware experiments using t...
Veksler, Ilya V.; Dorfman, Alexander M.; Danyushevsky, Leonid V.; Jakobsen, Jakob K.; Dingwell, Donald B.
2006-12-01
This study investigates partitioning of elements between immiscible aluminosilicate and borosilicate liquids using three synthetic mixtures doped with 32 trace elements. In order to get a good spatial separation of immiscible liquids, we employed a high-temperature centrifuge. Experiments were performed at 1,050-1,150°C, 1 atm, in sealed Fe and Pt containers. Quenched products were analysed by electron microprobe and LA ICP-MS. Nernst partition coefficients ( D’s) between the Fe-rich and Si-rich aluminosilicate immiscible liquids are the highest for Zn (3.3) and Fe (2.6) and the lowest for Rb and K (0.4-0.5). The plots of D values against ionic potential Z/r in all the compositions show a convex upward trend, which is typical also for element partitioning between immiscible silicate and salt melts. The results bear upon the speciation and structural position of elements in multicomponent silicate liquids. The ferrobasalt-rhyolite liquid immiscibility is observed in evolved basaltic magmas, and may play an important role in large gabbroic intrusions, such as Skaergaard, and during the generation of unusual lavas, such as ferropicrites.
Chong, Julie; Baltz, Rachel; Schmitt, Corinne; Beffa, Roland; Fritig, Bernard; Saindrenan, Patrick
2002-05-01
Plant UDP-Glc:phenylpropanoid glucosyltransferases (UGTs) catalyze the transfer of Glc from UDP-Glc to numerous substrates and regulate the activity of compounds that play important roles in plant defense against pathogens. We previously characterized two tobacco salicylic acid- and pathogen-inducible UGTs (TOGTs) that act very efficiently on the hydroxycoumarin scopoletin and on hydroxycinnamic acids. To identify the physiological roles of these UGTs in plant defense, we generated TOGT-depleted tobacco plants by antisense expression. After inoculation with Tobacco mosaic virus (TMV), TOGT-inhibited plants exhibited a significant decrease in the glucoside form of scopoletin (scopolin) and a decrease in scopoletin UGT activity. Unexpectedly, free scopoletin levels also were reduced in TOGT antisense lines. Scopolin and scopoletin reduction in TOGT-depleted lines resulted in a strong decrease of the blue fluorescence in cells surrounding TMV lesions and was associated with weakened resistance to infection with TMV. Consistent with the proposed role of scopoletin as a reactive oxygen intermediate (ROI) scavenger, TMV also triggered a more sustained ROI accumulation in TOGT-downregulated lines. Our results demonstrate the involvement of TOGT in scopoletin glucosylation in planta and provide evidence of the crucial role of a UGT in plant defense responses. We propose that TOGT-mediated glucosylation is required for scopoletin accumulation in cells surrounding TMV lesions, where this compound could both exert a direct antiviral effect and participate in ROI buffering.
Baumert, A; Mock, H P; Schmidt, J; Herbers, K; Sonnewald, U; Strack, D
2001-03-01
The patterns of secondary metabolites in leaves of yeast invertase-transgenic tobacco plants (Nicotiana tabacum L. cv. Samsun NN) were analyzed. Plants expressing cytosolic yeast-derived invertase (cytInv) or apoplastic (cell wall associated) yeast invertase (cwInv) showed a characteristic phytochemical phenotype compared to untransformed controls (wild-type plants). The level of phenylpropanoids decreased in the cytInv plants but increased in the cwInv plants, which showed an induced de novo synthesis of a caffeic acid amide, i.e. N-caffeoylputrescine. In addition, the level of the coumarin glucoside scopolin was markedly enhanced. Increased accumulation of scopolin in the cwInv plants is possibly correlated with the induction of defense reactions and the appearance of necrotic lesions similar to the hypersensitive response caused by avirulent pathogens. This is consistent with results from potato virus Y-infected plants. Whereas there was no additional increase in the coumarins in leaves following infection in cwInv plants, wild-type plants showed a slight increase and cytInc a marked increase.
Vaganan, M Mayil; Ravi, I; Nandakumar, A; Sarumathi, S; Sundararaju, P; Mustaffa, M M
2014-03-01
Activity differences of the first (phenylalanine ammonia lyase, PAL) and the last (cinnamyl alcohol dehydrogenase, CAD) enzymes of phenylpropanoid pathway in the roots of resistant (Yangambi Km5 and Anaikomban) and susceptible (Nendran and Robusta) banana cultivars caused by root lesion nematode, Pratylenchus coffeae, were investigated. Also, the accumulation of phenolics and deposition of lignin polymers in cell walls in relation to resistance of the banana cultivars to the nematode were analyzed. Compared to the susceptible cultivars, the resistant cultivars had constitutively significantly higher PAL activity and total soluble and cell wall-bound phenolics than in susceptible cultivars. The resistant cultivars responded strongly to the infection of the nematode by induction of several-time higher PAL and CAD enzymes activities, soluble and wall-bound phenolics and enrichment of lignin polymers in cell wall and these biochemical parameters reached maximum at 7th day postinoculation. In addition, profiles of phenolic acid metabolites in roots of Yangambi Km5 and Nendran were analyzed by HPLC to ascertain the underlying biochemical mechanism of bananas resistance to the nematode. Identification and quantification of soluble and cell wall-bound phenolic acids showed six metabolites and only quantitative, no qualitative, differences occurred between the resistant and susceptible cvs. and between constitutive and induced contents. A very prominent increase of p-coumaric, ferulic and sinapic acids, which are precursors of monolignols of lignin, in resistant cv. was found. These constitutive and induced biochemical alterations are definitely the chemical defenses of resistant cvs. to the nematode infection.
Inostroza-Blancheteau, Claudio; Reyes-Díaz, Marjorie; Arellano, Alejandro; Latsague, Mirtha; Acevedo, Patricio; Loyola, Rodrigo; Arce-Johnson, Patricio; Alberdi, Miren
2014-12-01
The effects of increased doses of UV-B radiation on anatomical, biochemical and molecular features of leaves of two highbush blueberry (Vaccinium corymbosum L. cv. Brigitta and Bluegold) genotypes were investigated. Plants were grown in a solid substrate and exposed to 0, 0.07, 0.12 and 0.19 Wm(-2) of biologically effective UV-B radiation for up to 72 h. Leaf thickness and the adaxial epidermis thickness fell more than 3-fold in both genotypes at the highest UV-B dose. Moreover, in Bluegold an evident disorganization in the different cell layers was observed at the highest UV-B radiation. A significant decrease in chlorophyll a/b after 6 h in Brigitta under the greater UV-B doses was observed. Anthocyanin and total phenolics were increased, especially at 0.19 Wm(-2), when compared to the control in both genotypes.Chlorogenic acid was the most abundant hydroxycinnamic acid in Brigitta, and was significantly higher (P ≤ 0.05) than in Bluegold leaves. Regarding the expression of phenylpropanoid genes, only the transcription factor VcMYBPA1 showed a significant and sustained induction at higher doses of UV-B radiation in both genotypes compared to the controls. Thus, the reduction of leaf thickness concomitant with a lower lipid peroxidation and rapid enhancement of secondary metabolites, accompanied by a stable induction of the VcMYBPA1 transcription factor suggest a better performance against UV-B radiation of the Brigitta genotype.
Matsuda, Fumio; Morino, Keiko; Miyashita, Masahiro; Miyagawa, Hisashi [Kyoto Univ. (Japan). Department of Agriculture
2003-05-01
The metabolic flux of two phenylpropanoid metabolites, N-p-coumaroyloctopamine (p-CO) and chlorogenic acid (CGA), in the wound-healing potato tuber tissue was quantitatively analyzed by a newly developed method based upon the tracer experiment using stable isotope-labeled compounds and LC-MS. Tuber disks were treated with aqueous solution of L-phenyl-d{sub 5}-alanine, and the change in the ratio of stable isotope-labeled compound to non-labeled (isotope abundance) was monitored for p-CO and CGA in the tissue extract by LC-MS. The time-dependent change in the isotope abundance of each metabolite was fitted to an equation that was derived from the formation and conversion kinetics of each compound. Good correlations were obtained between the observed and calculated isotope abundances for both p-CO and CGA. The rates of p-CO formation and conversion (i.e. fluxes) were 1.15 and 0.96 nmol (g FW){sup -1}h{sup -1}, respectively, and for CGA, the rates 4.63 and 0.42 nmol (g FW){sup -1}h{sup -1}, respectively. This analysis enabled a direct comparison of the biosynthetic activity between these two compounds. (author)
Burant, Aniela S.; Thompson, Christopher J.; Lowry, Gregory; Karamalidis, Athanasios
2016-05-17
Partitioning coefficients of organic compounds between water and supercritical CO2 (sc-CO2) are necessary to assess the risk of migration of these chemicals from subsurface CO2 storage sites. Despite the large number of potential organic contaminants, the current data set of published water-sc-CO2 partitioning coefficients is very limited. Here, the partitioning coefficients of thiophene, pyrrole, and anisole were measured in situ over a range of temperatures and pressures using a novel pressurized batch reactor system with dual spectroscopic detectors: a near infrared spectrometer for measuring the organic analyte in the CO2 phase, and a UV detector for quantifying the analyte in the aqueous phase. Our measured partitioning coefficients followed expected trends based on volatility and aqueous solubility. The partitioning coefficients and literature data were then used to update a published poly-parameter linear free energy relationship and to develop five new linear free energy relationships for predicting water-sc-CO2 partitioning coefficients. Four of the models targeted a single class of organic compounds. Unlike models that utilize Abraham solvation parameters, the new relationships use vapor pressure and aqueous solubility of the organic compound at 25 °C and CO2 density to predict partitioning coefficients over a range of temperature and pressure conditions. The compound class models provide better estimates of partitioning behavior for compounds in that class than the model built for the entire dataset.
Bollmann, Ulla E; Ou, Yi; Mayer, Philipp; Trapp, Stefan; Bester, Kai
2015-01-01
In recent years, the application of polymer-based renders and paints for façade coatings of buildings has risen enormously due to the increased mounting of thermal insulation systems. These materials are commonly equipped with biocides - algaecides, fungicides, and bactericides - to protect the materials from biological deterioration. However, the biocides need to be present in the water phase in order to be active and, hence, they are flushed of the material by rain water. In order to increase the knowledge about the partitioning of biocides from render into the water phase, partition constants between the polymer - in this case polyacrylate - and water were studied using glass fibre filters coated with polyacrylate. The polyacrylate-water partition constants (logKAcW) of ten biocides used in construction material varied between 1.66 (isoproturon) and 3.57 (dichloro-N-octylisothiazolinone). The correlation of the polyacrylate-water partition constants with the octanol-water partition constants is significant, but the polyacrylate-water partition constants were predominantly below octanol-water partition constants (Kow). The comparison with render-water distribution constants showed that estimating the leaching of biocides from render based on polymer-water partitioning is a useful and practical tool.
Association mapping of partitioning loci in barley
Mackay Ian J
2008-02-01
Full Text Available Abstract Background Association mapping, initially developed in human disease genetics, is now being applied to plant species. The model species Arabidopsis provided some of the first examples of association mapping in plants, identifying previously cloned flowering time genes, despite high population sub-structure. More recently, association genetics has been applied to barley, where breeding activity has resulted in a high degree of population sub-structure. A major genotypic division within barley is that between winter- and spring-sown varieties, which differ in their requirement for vernalization to promote subsequent flowering. To date, all attempts to validate association genetics in barley by identifying major flowering time loci that control vernalization requirement (VRN-H1 and VRN-H2 have failed. Here, we validate the use of association genetics in barley by identifying VRN-H1 and VRN-H2, despite their prominent role in determining population sub-structure. Results By taking barley as a typical inbreeding crop, and seasonal growth habit as a major partitioning phenotype, we develop an association mapping approach which successfully identifies VRN-H1 and VRN-H2, the underlying loci largely responsible for this agronomic division. We find a combination of Structured Association followed by Genomic Control to correct for population structure and inflation of the test statistic, resolved significant associations only with VRN-H1 and the VRN-H2 candidate genes, as well as two genes closely linked to VRN-H1 (HvCSFs1 and HvPHYC. Conclusion We show that, after employing appropriate statistical methods to correct for population sub-structure, the genome-wide partitioning effect of allelic status at VRN-H1 and VRN-H2 does not result in the high levels of spurious association expected to occur in highly structured samples. Furthermore, we demonstrate that both VRN-H1 and the candidate VRN-H2 genes can be identified using association mapping
Wirelength Minimization in Partitioning and Floorplanning Using Evolutionary Algorithms
I. Hameem Shanavas
2011-01-01
Full Text Available Minimizing the wirelength plays an important role in physical design automation of very large-scale integration (VLSI chips. The objective of wirelength minimization can be achieved by finding an optimal solution for VLSI physical design components like partitioning and floorplanning. In VLSI circuit partitioning, the problem of obtaining a minimum delay has prime importance. In VLSI circuit floorplanning, the problem of minimizing silicon area is also a hot issue. Reducing the minimum delay in partitioning and area in floorplanning helps to minimize the wirelength. The enhancements in partitioning and floorplanning have influence on other criteria like power, cost, clock speed, and so forth. Memetic Algorithm (MA is an Evolutionary Algorithm that includes one or more local search phases within its evolutionary cycle to obtain the minimum wirelength by reducing delay in partitioning and by reducing area in floorplanning. MA applies some sort of local search for optimization of VLSI partitioning and floorplanning. The algorithm combines a hierarchical design technique like genetic algorithm and constructive technique like Simulated Annealing for local search to solve VLSI partitioning and floorplanning problem. MA can quickly produce optimal solutions for the popular benchmark.
Fat polygonal partitions with applications to visualization and embeddings
Mark de Berg
2013-12-01
Full Text Available Let T be a rooted and weighted tree, where the weight of any node is equal to the sum of the weights of its children. The popular Treemap algorithm visualizes such a tree as a hierarchical partition of a square into rectangles, where the area of the rectangle corresponding to any node in T is equal to the weight of that node. The aspect ratio of the rectangles in such a rectangular partition necessarily depends on the weights and can become arbitrarily high.We introduce a new hierarchical partition scheme, called a polygonal partition, which uses convex polygons rather than just rectangles. We present two methods for constructing polygonal partitions, both having guarantees on the worst-case aspect ratio of the constructed polygons; in particular, both methods guarantee a bound on the aspect ratio that is independent of the weights of the nodes.We also consider rectangular partitions with slack, where the areas of the rectangles may differ slightly from the weights of the corresponding nodes. We show that this makes it possible to obtain partitions with constant aspect ratio. This result generalizes to hyper-rectangular partitions in ℝd. We use these partitions with slack for embedding ultrametrics into d-dimensional Euclidean space: we give a polylog(Δ-approximation algorithm for embedding n-point ultrametrics into ℝd with minimum distortion, where Δ denotes the spread of the metric. The previously best-known approximation ratio for this problem was polynomial in n. This is the first algorithm for embedding a non-trivial family of weighted-graph metrics into a space of constant dimension that achieves polylogarithmic approximation ratio.
Partitioning the Conventional DBT System for Multiprocessors
Ru-Hui Ma; Hai-Bing Guan; Er-Zhou Zhu; Hong-Bo Yang; Yin-Dong Yang; A-Lei Liang
2011-01-01
Noticeable performance improvement via ever-increasing transistors is gradually trapped into a predicament since software cannot logically and efficiently utilize hardware resource, such as multi-core resource. This is an inevitable problem in dynamic binary translation (DBT) system as well. Though special purpose hardware as aide tool, through some interfaces, provided by DBT enables the system to achieve higher performance, the limitation of it is significant, that is, it is impossible to be used widely by another one. To overcome this drawback, we focus on building compatible software architecture to acquire higher performance without platform dependence. In this paper, we propose a novel multithreaded architecture for DBT system through partitioning distinct function module, which is to adequately utilize multiprocessors resource. This new architecture devides couples the common DBT system (DBTs) working routine into dynamic translation, optimization, and translated code execution phases, and then ramifies them into different threads to enable them concurrently executed. In this new architecture, several efficient novel methods are presented to cope with intractable work that puzzles most researchers, such as communication mechanism, cache layout, and mutual exclusion between threads. Experimental results using SPECint 2000 indicate that this new architecture for DBT system can achieve higher performance-speed up the traditional DBT system by about average 10.75%, with better CPU utilization.
Assimilate partitioning in avocado, Persea americana
Finazzo, S.; Davenport, T.L.
1986-04-01
Assimilate partitioning is being studied in avocado, Persea americana cv. Millborrow in relation to fruit set. Single leaves on girdled branches of 10 year old trees were radiolabeled for 1 hr with 13..mu..Ci of /sup 14/CO/sub 2/. The source leaves were sampled during the experiment to measure translocation rates. At harvest the sink tissues were dissected and the incorporated radioactivity was measured. The translocation of /sup 14/C-labelled compounds to other leaves was minimal. Incorporation of label into fruitlets varied with the tissue and the stage of development. Sink (fruitlets) nearest to the labelled leaf and sharing the same phyllotaxy incorporated the most /sup 14/C. Source leaves for single non-abscising fruitlets retained 3X more /sup 14/C-labelled compounds than did source leaves for 2 or more fruitlets at 31 hrs. post-labelling. Export of label decreased appreciably when fruitlets abscised. If fruitlets abscised within 4 days of labeling then the translocation pattern was similar to the pattern for single fruitlets. If the fruitlet abscised later, the translocation pattern was intermediate between the single and double fruitlet pattern.
Bandwidth Partitioning in Decentralized Wireless Networks
Jindal, Nihar; Weber, Steven
2007-01-01
This paper addresses the following question, which is of interest in the design of a multiuser decentralized network. Given a total system bandwidth of W Hz and a fixed data rate constraint of R bps for each transmission, how many frequency slots N of size W/N should the band be partitioned into in order to maximize the number of simultaneous links in the network? Dividing the available spectrum results in two competing effects. On the positive side, a larger N allows for more parallel, non-interfering communications to take place in the same area. On the negative side, a larger N increases the SINR requirement for each link because the same information rate must be achieved over less bandwidth, which in turn increases the area consumed by each transmission. Exploring this tradeoff and determining the optimum value of N in terms of the system parameters is the focus of the paper. Using stochastic geometry, the optimal SINR threshold - which directly corresponds to the optimal spectral efficiency - is derived ...
Boosting Moving Object Indexing through Velocity Partitioning
Nguyen, Thi; Zhang, Rui; Ward, Phillip
2012-01-01
There have been intense research interests in moving object indexing in the past decade. However, existing work did not exploit the important property of skewed velocity distributions. In many real world scenarios, objects travel predominantly along only a few directions. Examples include vehicles on road networks, flights, people walking on the streets, etc. The search space for a query is heavily dependent on the velocity distribution of the objects grouped in the nodes of an index tree. Motivated by this observation, we propose the velocity partitioning (VP) technique, which exploits the skew in velocity distribution to speed up query processing using moving object indexes. The VP technique first identifies the "dominant velocity axes (DVAs)" using a combination of principal components analysis (PCA) and k-means clustering. Then, a moving object index (e.g., a TPR-tree) is created based on each DVA, using the DVA as an axis of the underlying coordinate system. An object is maintained in the index whose DVA...
Kinetic partitioning mechanism of HDV ribozyme folding
Chen, Jiawen; Gong, Sha; Wang, Yujie; Zhang, Wenbing
2014-01-01
RNA folding kinetics is directly tied to RNA biological functions. We introduce here a new approach for predicting the folding kinetics of RNA secondary structure with pseudoknots. This approach is based on our previous established helix-based method for predicting the folding kinetics of RNA secondary structure. In this approach, the transition rates for an elementary step: (1) formation, (2) disruption of a helix stem, and (3) helix formation with concomitant partial melting of an incompatible helix, are calculated with the free energy landscape. The folding kinetics of the Hepatitis delta virus (HDV) ribozyme and the mutated sequences are studied with this method. The folding pathways are identified by recursive searching the states with high net flux-in(out) population starting from the native state. The theory results are in good agreement with that of the experiments. The results indicate that the bi-phasic folding kinetics for the wt HDV sequence is ascribed to the kinetic partitioning mechanism: Part of the population will quickly fold to the native state along the fast pathway, while another part of the population will fold along the slow pathway, in which the population is trapped in a non-native state. Single mutation not only changes the folding rate but also the folding pathway.
Partition Decomposition for Roll Call Data
Leibon, Greg; Rockmore, Daniel N; Savell, Robert
2011-01-01
In this paper we bring to bear some new tools from statistical learning on the analysis of roll call data. We present a new data-driven model for roll call voting that is geometric in nature. We construct the model by adapting the "Partition Decoupling Method," an unsupervised learning technique originally developed for the analysis of families of time series, to produce a multiscale geometric description of a weighted network associated to a set of roll call votes. Central to this approach is the quantitative notion of a "motivation," a cluster-based and learned basis element that serves as a building block in the representation of roll call data. Motivations enable the formulation of a quantitative description of ideology and their data-dependent nature makes possible a quantitative analysis of the evolution of ideological factors. This approach is generally applicable to roll call data and we apply it in particular to the historical roll call voting of the U.S. House and Senate. This methodology provides a...
Kinetic partitioning mechanism of HDV ribozyme folding
Chen, Jiawen; Gong, Sha; Wang, Yujie; Zhang, Wenbing, E-mail: wbzhang@whu.edu.cn [Department of Physics, Wuhan University, Wuhan, Hubei 430072 (China)
2014-01-14
RNA folding kinetics is directly tied to RNA biological functions. We introduce here a new approach for predicting the folding kinetics of RNA secondary structure with pseudoknots. This approach is based on our previous established helix-based method for predicting the folding kinetics of RNA secondary structure. In this approach, the transition rates for an elementary step: (1) formation, (2) disruption of a helix stem, and (3) helix formation with concomitant partial melting of an incompatible helix, are calculated with the free energy landscape. The folding kinetics of the Hepatitis delta virus (HDV) ribozyme and the mutated sequences are studied with this method. The folding pathways are identified by recursive searching the states with high net flux-in(out) population starting from the native state. The theory results are in good agreement with that of the experiments. The results indicate that the bi-phasic folding kinetics for the wt HDV sequence is ascribed to the kinetic partitioning mechanism: Part of the population will quickly fold to the native state along the fast pathway, while another part of the population will fold along the slow pathway, in which the population is trapped in a non-native state. Single mutation not only changes the folding rate but also the folding pathway.
Partitioned R-matrix theory for molecules
Tennyson, Jonathan [Department of Physics and Astronomy, University College London, Gower St., London WC1E 6BT (United Kingdom)
2004-03-14
R-matrix calculations usually require all the eigenvalues and eigenvectors of the inner region Hamiltonian matrix. For molecular problems, particularly when large configuration interaction expansions are used for the target, the Hamiltonian matrix is often too large to be completely diagonalized. Berrington and Ballance (2002 J. Phys. B: At. Mol. Opt. Phys. 35 2275) proposed a partitioned R-matrix theory which only required a proportion of the solutions of the Hamiltonian matrix. This theory was implemented and tested in the atomic R-matrix code. The theory is adapted to the needs of R-matrix calculations on low-energy electron-molecule collisions. A number of alternative procedures are tested. The best is shown to give reliable results with explicit inclusion of only a fraction of the solutions. It is shown that with this revised theory the number of solutions required does not depend on the complexity of the target wavefunction even though this strongly influences the size of the final Hamiltonian matrix. This method will be implemented as part of the UK molecular R-matrix program suite.
Dual partitioning for effective Hamiltonians to avoid intruders
Ten-no, Seiichiro
2015-01-01
We present a new Hamiltonian partitioning which converges an arbitrary number of states of interest in the effective Hamiltonian to the full configuration interaction limits simultaneously. This feature is quite useful for the recently developed model space quantum Monte Carlo. A dual partitioning (DP) technique is introduced to avoid the intruder state problem present in the previous eigenvalue independent partitioning of Coope. The new approach is computationally efficient and applicable to general excited states involving conical intersections. We present a preliminary application of the method to model systems to investigate the performance.
b-Tree Facets for the Simple Graph Partitioning Polytope
Sørensen, Michael Malmros
2000-01-01
The simple graph partitioning problem is to partition an edge-weighted graph into mutually disjoint subgraphs, each consisting of no more than b nodes, such that the sum of the weights of all edges in the subgraphs is maximal. In this paper we introduce a large class of facet defining inequalities...... for the simple graph partitioning polytopes P_n(b), b >= 3, associated with the complete graph on n nodes. These inequalities are induced by a graph configuration which is built upon trees of cardinality b. We provide a closed-form theorem that states all necessary and sufficient conditions for the facet...
b-tree facets for the simple graph partitioning polytope
Sørensen, Michael Malmros
2004-01-01
The simple graph partitioning problem is to partition an edge-weighted graph into mutually disjoint subgraphs, each consisting of no more than b nodes, such that the sum of the weights of all edges in the subgraphs is maximal. In this paper we introduce a large class of facet defining inequalities...... for the simple graph partitioning polytopes P_n(b), b >= 3, associated with the complete graph on n nodes. These inequalities are induced by a graph configuration which is built upon trees of cardinality b. We provide a closed-form theorem that states all necessary and sufficient conditions for the facet...
Generalization of a few results in Integer Partitions
Dastidar, Manosij Ghosh
2011-01-01
In this paper, we generalize a few important results in Integer Partitions; namely the results known as Stanley's theorem and Elder's theorem, and the congruence results proposed by Ramanujan for the partition function. We generalize the results of Stanley and Elder from a fixed integer to an array of subsequent integers, and propose an analogue of Ramanujan's congruence relations for the `number of parts' function instead of the partition function. We also deduce the generating function for the `number of parts', and relate the technical results with their graphical interpretations through a novel use of the Ferrer's diagrams.
Fractional crystallization of iron meteorites: Constant versus changing partition coefficients
Jones, J. H.
1994-01-01
Analyses of magmatic iron meteorites, plotted on LogC(sub i) vs LogC(sub Ni) diagrams, often form linear arrays. Traditionally, this linearity has been ascribed to fractional crystallization under the assumption of constant partition coefficients (i.e., Rayleigh fractionation). Paradoxically, however, partition coefficients in the Fe-Ni-S-P system are decidedly not constant. This contribution provides a rationale for understanding how trends on LogC(sub i) vs LogC(sub Ni) diagrams can be linear, even when partition coefficients are changing rapidly.
Bosonic Partition Functions at Nonzero (Imaginary) Chemical Potential
Kellerstein, M
2016-01-01
We consider bosonic random matrix partition functions at nonzero chemical potential and compare the chiral condensate, the baryon number density and the baryon number susceptibility to the result of the corresponding fermionic partition function. We find that as long as results are finite, the phase transition of the fermionic theory persists in the bosonic theory. However, in case that bosonic partition function diverges and has to be regularized, the phase transition of the fermionic theory does not occur in the bosonic theory, and the bosonic theory is always in the broken phase.
Supersymmetric Gauge Theories with Matters, Toric Geometries and Random Partitions
Noma, Y
2006-01-01
We derive the relation between the Hilbert space of certain geometries under the Bohr-Sommerfeld quantization and the perturbative prepotentials for the supersymmetric five-dimensional SU(N) gauge theories with massive fundamental matters and with one massive adjoint matter. The gauge theory with one adjoint matter shows interesting features. A five-dimensional generalization of Nekrasov's partition function can be written as a correlation function of two-dimensional chiral bosons and as a partition function of a statistical model of partitions. From a ground state of the statistical model we reproduce the polyhedron which characterizes the Hilbert space.
Approximating the partition function of the ferromagnetic Potts model
Goldberg, Leslie Ann
2010-01-01
We provide evidence that it is computationally difficult to approximate the partition function of the ferromagnetic q-state Potts model when q>2. Specifically we show that the partition function is hard for the complexity class #RHPi_1 under approximation-preserving reducibility. Thus, it is as hard to approximate the partition function as it is to find approximate solutions to a wide range of counting problems, including that of determining the number of independent sets in a bipartite graph. Our proof exploits the second order phase transition of the "random cluster" model, which is a probability distribution on graphs that is closely related to the q-state Potts
Exact partition functions for gauge theories on Rλ3
Jean-Christophe Wallet
2016-11-01
Full Text Available The noncommutative space Rλ3, a deformation of R3, supports a 3-parameter family of gauge theory models with gauge-invariant harmonic term, stable vacuum and which are perturbatively finite to all orders. Properties of this family are discussed. The partition function factorizes as an infinite product of reduced partition functions, each one corresponding to the reduced gauge theory on one of the fuzzy spheres entering the decomposition of Rλ3. For a particular sub-family of gauge theories, each reduced partition function is exactly expressible as a ratio of determinants. A relation with integrable 2-D Toda lattice hierarchy is indicated.
Exact partition functions for gauge theories on Rλ3
Wallet, Jean-Christophe
2016-11-01
The noncommutative space R,SUB>λ3, a deformation of R3, supports a 3-parameter family of gauge theory models with gauge-invariant harmonic term, stable vacuum and which are perturbatively finite to all orders. Properties of this family are discussed. The partition function factorizes as an infinite product of reduced partition functions, each one corresponding to the reduced gauge theory on one of the fuzzy spheres entering the decomposition of R&x03bb;3. For a particular sub-family of gauge theories, each reduced partition function is exactly expressible as a ratio of determinants. A relation with integrable 2-D Toda lattice hierarchy is indicated.
Shoeib, Mahiba; Harner, Tom
2002-05-01
Octanol-air partition coefficients (Koa) were measured directly for 19 organochlorine (OC) pesticides over the temperature range of 5 to 35 degrees C. Values of log Koa at 25 degrees C ranged over three orders of magnitude, from 7.4 for hexachlorobenzene to 10.1 for 1,1-dichloro-2,2-bis(p-chlorophenyl) ethane. Measured values were compared to values calculated as KowRT/H (where R is the ideal gas constant [8.314 J mol(-1) K(-1)], T is absolute temperature, and H is Henry's law constant) were, in general, larger. Discrepancies of up to three orders of magnitude were observed, highlighting the need for direct measurements of Koa. Plots of Koa versus inverse absolute temperature exhibited a log-linear correlation. Enthalpies of phase transition between octanol and air (deltaHoa) were determined from the temperature slopes and were in the range of 56 to 105 kJ mol(-1) K(-1). Activity coefficients in octanol (gamma(o)) were determined from Koa and reported supercooled liquid vapor pressures (pL(o)), and these were in the range of 0.3 to 12, indicating near-ideal solution behavior. Differences in Koa values for structural isomers of hexachlorocyclohexane were also explored. A Koa-based model was described for predicting the partitioning of OC pesticides to aerosols and used to calculate particulate fractions at 25 and -10 degrees C. The model also agreed well with experimental results for several OC pesticides that were equilibrated with urban aerosols in the laboratory. A log-log regression of the particle-gas partition coefficient versus Koa had a slope near unity, indicating that octanol is a good surrogate for the aerosol organic matter.
Reducing and exaggerating escalation of commitment by option partitioning.
Kwong, Jessica Y Y; Wong, Kin Fai Ellick
2014-07-01
Options under escalation situations can be presented as a general class (e.g., investing in electronic products) or be partitioned into disjunctive suboptions within that class (e.g., investing in MP3 players, portable TV game consoles, and other electronic products). Drawing from the theoretical bases of partition priming and mental accounting, this research found support from 4 experiments that (a) a decision maker's commitment to a failing course of action is exaggerated when the escalation options are partitioned into multiple suboptions, whereas such commitment is reduced when the alternative options are portioned into suboptions, and (b) these partitioning effects are mediated by the subjective utility, including subjective values and probability, of the escalation option.
Scale dependent partitioning of one-dimensional aperiodic set diffraction
Elkharrat, A.
2004-06-01
We give a multiresolution partition of pure point parts of diffraction patterns of one-dimensional aperiodic sets. When an aperiodic set is related to the Golden Ratio, denoted by tau, it is well known that the pure point part of its diffractive measure is supported by the extension ring of tau, denoted by mathbb{Z}[tau]. The partition we give is based on the formalism of the so called tau-integers, denoted by mathbb{Z}_tau. The set of tau-integers is a selfsimilar set obeying mathbb{Z}_tau/tau^{j-1}subsetmathbb{Z}_tau/tau^j subset mathbb{Z}_tau/tau^{j + 1} subsetmathbb{Z}[tau], jinmathbb{Z}. The pure point spectrum is then partitioned with respect to this “Russian doll” like sequence of subsets mathbb{Z}_tau/tau^j. Thus we deduce the partition of the pure point part of the diffractive measure of aperiodic sets.
Developing Key Parameters for Green Performance of Partition Wall Blocks
Goh Cheng Siew
2016-01-01
Full Text Available To promote sustainable construction, it is important to consider green performance of construction materials throughout the life cycle. Selecting inappropriate materials could not only affect the functional performance but also preclude the achievement of green building performance as a whole. Green performance of construction materials has therefore been one of the primary considerations of green building assessment systems. Using partition wall blocks as an example, this paper examines green performance of building materials primarily from the cradle to gate boundaries. Nine key parameters are proposed for the green performance of partition wall blocks. Apart from environmental features, technical performance of partition wall blocks is also taken into consideration since it is the determinant of the lifecycle performance. This paper offers a roadmap to decision makers to make environmentally responsible choices for their materials of internal walls and partitions, and hence provides a potential sustainable solution for green buildings.
Entanglement resonances of driven multi-partite quantum systems
Sauer, Simeon; Buchleitner, Andreas
2011-01-01
We show that periodic driving of a weakly interacting set of qubits can generate strongly entangled multi-partite dressed states. Floquet theory allows to predict, from single particle dynamics only, the driving parameters at which such "entanglement resonances" occur.
A new method for counting trees with vertex partition
2008-01-01
A direct and elementary method is provided in this paper for counting trees with vertex partition instead of recursion, generating function, functional equation, Lagrange inversion, and matrix methods used before.
Energy-Aware Task Partitioning on Heterogeneous Multiprocessor Platforms
Saad, Elsayed; Shalan, Mohamed; Elewi, Abdullah
2012-01-01
Efficient task partitioning plays a crucial role in achieving high performance at multiprocessor plat forms. This paper addresses the problem of energy-aware static partitioning of periodic real-time tasks on heterogeneous multiprocessor platforms. A Particle Swarm Optimization variant based on Min-min technique for task partitioning is proposed. The proposed approach aims to minimize the overall energy consumption, meanwhile avoid deadline violations. An energy-aware cost function is proposed to be considered in the proposed approach. Extensive simulations and comparisons are conducted in order to validate the effectiveness of the proposed technique. The achieved results demonstrate that the proposed partitioning scheme significantly surpasses previous approaches in terms of both number of iterations and energy savings.
String partition functions in Rindler space and maximal acceleration
Mertens, Thomas G; Zakharov, Valentin I
2015-01-01
We revisit non-interacting string partition functions in Rindler space by summing over fields in the spectrum. Using recent results of JHEP 1505 (2015) 106, this construction, first done by Emparan, can be put on much firmer ground. For open strings, we demonstrate that surface contributions to the higher spin fields correspond to open strings piercing the Rindler origin, unifying the higher spin surface contributions in string language. We generalize the construction of these partition functions to type II and heterotic superstrings and demonstrate modular invariance for the resulting partition functions. Also, explicit signs of spacetime supersymmetry are visible. All of these exhibit an IR divergence that can be interpreted as a maximal acceleration with $T_{\\text{crit}} = T_{H}/\\pi$ close to the black hole horizon. Ultimately, these partition functions are not physical, and divergences here should not be viewed as a failure of string theory: maximal acceleration is a feature of a faulty treatment of the h...
47 CFR 101.1111 - Partitioning and disaggregation.
2010-10-01
... spectrum at any time following the grant of their licenses. (c) Technical standards—(1) Partitioning. In... recognized service area is utilized (i.e., Major Trading Area, Basic Trading Area, Metropolitan Service Area...
47 CFR 90.911 - Partitioned licenses and disaggregated spectrum.
2010-10-01
... assignment of a license pursuant to § 90.153(c). (b) Technical standards—(1) Partitioning. In the case of... is utilized (i.e., Major Trading Area, Basic Trading Area, Metropolitan Service Area, Rural Service...
47 CFR 90.813 - Partitioned licenses and disaggregated spectrum.
2010-10-01
... assignment of a license pursuant to § 1.948 of this chapter. (b) Technical standards—(1) Partitioning. In the... recognized service area is utilized (i.e., Major Trading Area, Basic Trading Area, Metropolitan Service Area...
Factorization of S^3/Z_n partition function
Imamura, Yosuke; Yokoyama, Daisuke
2013-01-01
We investigate S^3/Z_n partition function of 3d N = 2 supersymmetric field theories. In a gauge theory the partition function is the sum of the contributions of sectors specified by holonomies, and we should carefully choose the relative signs among the contributions. We argue that the factorization to holomorphic blocks is a useful criterion to determine the signs and propose a formula for them. We show that the orbifold partition function of a general non-gauge theory is correctly factorized provided that we take appropriate relative signs. We also present a few examples of gauge theories. We point out that the sign factor for the orbifold partition function is closely related to a similar sign factor in the lens space index and the 3d index.
Surface Modifications of Support Partitions for Stabilizing Biomimetic Membrane Arrays
Perry, Mark; Hansen, Jesper Schmidt; Jensen, Karin Bagger Stibius;
2011-01-01
Black lipid membrane (BLM) formation across apertures in an ethylene tetra-fluoroethylene (ETFE) partition separating two aqueous compartments is an established technique for the creation of biomimetic membranes. Recently multi-aperture BLM arrays have attracted interest and in order to increase...... modified partitions were similar and significantly lower than for arrays formed using untreated ETFE partitions. For single side n-hexene modification average membrane array lifetimes were not significantly changed compared to untreated ETFE. Double-sided n-hexene modification greatly improved average...... membrane array lifetimes compared to membrane arrays formed across untreated ETFE partitions. n-hexene modifications resulted in BLM membrane arrays which over time developed significantly lower conductance (Gm) and higher capacitance (Cm) values compared to the other membranes with the strongest effect...
The Kostant partition functions for twisted Kac-Moody algebras
Ranabir Chakrabarti
2000-01-01
Full Text Available Employing the method of generating functions and making use of some infinite product identities like Euler, Jacobi's triple product and pentagon identities we derive recursion relations for Kostant's partition functions for the twisted Kac-Moody algebras.
Resource Partitioning and Routing Optimization in Relay Enhanced Cellular Network
LIU Tao; RONG Meng-tian; SHI Hong-kui; XUE Yi-sheng
2007-01-01
A joint routing and resource partitioning scheme were proposed to improve cell capacity and user throughput of cellular network enhanced with two-hop fixed relay nodes (FRNs).Radio resources are partitioned under a reuse partitioning based framework, which guarantees effective and efficient inter-cell interference management.At the same time, each mobile terminal was assigned a channel-dependent route by the routing controller,which tries to maximize the cell capacity under the constraint imposed by reuse partitioning.Intensive computer simulations demonstrate the performance superiority of the FRN enhanced cellular network employing this scheme in comparison with conventional network, as well as the validity of the channel-dependent routing mechanism.
Leaf area controls on energy partitioning of a mountain grassland
A. Hammerle
2007-10-01
Full Text Available Using a six year data set of eddy covariance flux measurements of sensible and latent heat, soil heat flux, net radiation, above-ground phytomass and meteorological driving forces energy partitioning was investigated at a temperate mountain grassland managed as a hay meadow in the Stubai Valley (Austria. The main findings of the study were: i Energy partitioning was dominated by latent heat, followed by sensible heat and the soil heat flux; ii When compared to standard environmental forcings, the amount of green plant matter, which due to three cuts varied considerably during the vegetation period, explained similar, and partially larger, fractions of the variability in energy partitioning; ii There were little, if any, indications of water stress effects on energy partitioning, despite reductions in soil water availability in combination with high evaporative demand, e.g. during the summer drought of 2003.
The Kostant partition functions for twisted Kac-Moody algebras
Ranabir Chakrabarti; Santhanam, Thalanayar S.
2000-01-01
Employing the method of generating functions and making use of some infinite product identities like Euler, Jacobi's triple product and pentagon identities we derive recursion relations for Kostant's partition functions for the twisted Kac-Moody algebras.
Feng, Fengjuan; Li, Mingjun; Ma, Fengwang; Cheng, Lailiang
2013-08-01
The shaded peel of 'Fortune' (a red cultivar) and 'Mutsu' (a yellow/green cultivar) apple (Malus domestica Borkh.) was exposed to full sun by turning fruit 180° at about one week before harvest to determine the expression of key genes involved in anthocyanin synthesis in response to sunlight exposure and their relationships with the levels of anthocyanins and other phenolics. For the unturned (control) fruit, the shaded peel had lower expression levels of MdMYB10 (a transcriptional factor in the regulation of anthocyanin biosynthesis) and seven structural genes in anthocyanin synthesis (MdPAL, MdCHS, MdCHI, MdF3H, MdDFR1, MdLDOX, and MdUFGT), and lower levels of anthocyanins and flavonols than the sun-exposed peel in both cultivars. Exposure of the shaded peel to full sun caused marked up-regulation of the expression of MdMYB10 and all seven structural genes, which peaked between 6 h and 30 h after fruit turning, consequently leading to higher levels of anthocyanins, flavonols, and total phenolics than in the shaded peel and even in the sun-exposed peel of control fruit. Interestingly, the levels of flavonols were higher in the shaded peel of turned fruit (the original sun-exposed peel) than in the sun-exposed peel of both control and turned fruit in both cultivars, suggesting that competition for substrates exists in different branches of the phenylpropanoid pathway. These results indicate that sunlight exposure stimulates the expression of MdMYB10 and structural genes in anthocyanin synthesis, thereby elevating the levels of anthocyanins and other phenolic compounds in both red and yellow/green cultivars. Copyright © 2013 Elsevier Masson SAS. All rights reserved.
Francisco Espinosa
Full Text Available Roots of intact olive seedlings, axenically cultured, were alternatively placed in contact with Rhizophagus irregularis (mycorrhizal or Verticillim dahliae (pathogenic fungi. MeJA treatments were also included. In vivo redox activities in the apoplast of the intact roots (anion superoxide generation, superoxide dismutase and peroxidase activities were measured. All our results showed that apoplastic redox activities of intact seedling roots in contact with the compatible mycorrhizal fungus were clearly attenuated in comparison with the pathogenic fungus or treated with MeJA, even at the early stages of treatment used. Total phenolics, flavonoids and phenylpropanoid glycosides were also quantified. Roots in contact with the mycorrhizal fungus did not enhance the biosynthesis of phenolic compounds with respect to controls, while those in contact with the pathogenic one significantly enhanced the biosynthesis of all phenolic fractions measured. Reactive oxygen species and nitric oxid accumulation in roots were examined by fluorescence microscopy. All of them presented much higher accumulation in roots in contact with the pathogenic than with the mycorrhizal fungus. Altogether these results indicate that intact olive seedling roots clearly differentiated between mycorrhizal and pathogenic fungi, attenuating defense reactions against the first to facilitate its establishment, while inducing a strong and sustained defense reaction against the second. Both reactive oxygen and nitrogen species seemed to be involved in these responses from the first moments of contact. However, further investigations are required to clarify the proposed crosstalk between them and their respective roles in these responses since fluorescence images of roots revealed that reactive oxygen species were mainly accumulated in the apoplast (congruently with the measured redox activities in this compartment while nitric oxid was mainly stored in the cytosol.
Mutuku, J Musembi; Nose, Akihiro
2012-06-01
Rhizoctonia solani Kuhn causes sheath blight disease in rice, and genetic resistance against it is the most desirable characteristic. Current improvement efforts are based on analysis of polygenic quantitative trait loci (QTLs), but interpretation is limited by the lack of information on the changes in metabolic pathways. Our previous studies linked activation of the glycolytic pathway to enhanced generation of lignin in the phenylpropanoid pathway. The current studies investigated the regulation of glycolysis by examining the time course of changes in enzymatic activities and metabolite contents. The results showed that the activities of all glycolytic enzymes as well as fructose-6-phosphate (F-6-P), fructose-1,6-bisphosphate (F-1,6-P(2)), dihydroxyacetone phosphate (DHAP), glyceraldehyde-3-phosphate (GAP), 3-phosphoglycerate (3-PG), phosphoenolpyruvate (PEP) and pyruvate contents increased. These results combined with our previous findings that the expression of phosphoglucomutase (PGM), triosephosphate isomerase (TPI), glyceraldehyde-3-phosphate dehydrogenase (GAPDH), enolase and pyruvate kinase (PK) increased after infection suggested that the additional establishment of glycolysis in the cytosol compartment occurred after infection. Further evidence for this was our recent findings that the increase in expression of the 6-phosphofructokinase (PFK) plastid isozyme Os06g05860 was accompanied by an increase in expression of three cytosolic PFK isozymes, i.e. Os01g09570, Os01g53680 and Os04g39420, as well as pyrophosphate-dependent phosphofrucokinase (PFP) isozymes Os08g25720 (α-subunit) and Os06g13810 (β-subunit) in infected rice plants of the resistant line. The results also showed that the reactions catalysed by PFK/PFP, aldolase, GAPDH + phosphoglycerate kinase (PGK) and PK in leaf sheaths of R. solani-infected rice plants were non-equilibrium reactions in vivo. This study showed that PGM, phosphoglucose isomerase (PGI), TPI and phosphoglycerate mutase (PGmu
Yu, Song Yi; Lee, Ik-Soo; Jung, Seung-Hyun; Lee, Yun Mi; Lee, Yu-Ri; Kim, Joo-Hwan; Sun, Hang; Kim, Jin Sook
2013-12-01
In our continuing efforts to identify effective naturally sourced agents for diabetic complications, five caffeoylated phenylpropanoid glycosides, acteoside (1), isoacteoside (2), poliumoside (3), brandioside (4), and pheliposide (5) were isolated from the 80% EtOH extract of Brandisia hancei stems and leaves. These isolates (1-5) were subjected to an in vitro bioassay evaluating their inhibitory activity on advanced glycation end product formation and rat lens aldose reductase activity. All tested compounds exhibited significant inhibition of advanced glycation end product formation with IC50 values of 4.6-25.7 µM, compared with those of aminoguanidine (IC50=1,056 µM) and quercetin (IC50=28.4 µM) as positive controls. In the rat lens aldose reductase assay, acteoside, isoacteoside, and poliumoside exhibited greater inhibitory effects on rat lens aldose reductase with IC50 values of 0.83, 0.83, and 0.85 µM, respectively, than those of the positive controls, 3,3-tetramethyleneglutaric acid (IC50=4.03 µM) and quercetin (IC50=7.2 µM). In addition, the effect of acteoside on the dilation of hyaloid-retinal vessels induced by high glucose in larval zebrafish was investigated. Acteoside reduced the diameters of high glucose-induced hyaloid-retinal vessels by 69% at 10 µM and 81% at 20 µM, compared to the high glucose-treated control group. These results suggest that B. hancei and its active components might be beneficial in the treatment and prevention of diabetic vascular complications.
Multimedia environmental chemical partitioning from molecular information.
Martínez, Izacar; Grifoll, Jordi; Giralt, Francesc; Rallo, Robert
2010-12-15
The prospect of assessing the environmental distribution of chemicals directly from their molecular information was analyzed. Multimedia chemical partitioning of 455 chemicals, expressed in dimensionless compartmental mass ratios, was predicted by SimpleBox 3, a Level III Fugacity model, together with the propagation of reported uncertainty for key physicochemical and transport properties, and degradation rates. Chemicals, some registered in priority lists, were selected according to the availability of experimental property data to minimize the influence of predicted information in model development. Chemicals were emitted in air or water in a fixed geographical scenario representing the Netherlands and characterized by five compartments (air, water, sediments, soil and vegetation). Quantitative structure-fate relationship (QSFR) models to predict mass ratios in different compartments were developed with support vector regression algorithms. A set of molecular descriptors, including the molecular weight and 38 counts of molecular constituents were adopted to characterize the chemical space. Out of the 455 chemicals, 375 were used for training and testing the QSFR models, while 80 were excluded from model development and were used as an external validation set. Training and test chemicals were selected and the domain of applicability (DOA) of the QSFRs established by means of self-organizing maps according to structural similarity. Best results were obtained with QSFR models developed for chemicals belonging to either the class [C] and [C; O], or the class with at least one heteroatom different than oxygen in the structure. These two class-specific models, with respectively 146 and 229 chemicals, showed a predictive squared coefficient of q(2) ≥ 0.90 both for air and water, which respectively dropped to q(2)≈ 0.70 and 0.40 for outlying chemicals. Prediction errors were of the same order of magnitude as the deviations associated to the uncertainty of the
Inverted temperature sequences: role of deformation partitioning
Grujic, D.; Ashley, K. T.; Coble, M. A.; Coutand, I.; Kellett, D.; Whynot, N.
2015-12-01
The inverted metamorphism associated with the Main Central thrust zone in the Himalaya has been historically attributed to a number of tectonic processes. Here we show that there is actually a composite peak and deformation temperature sequence that formed in succession via different tectonic processes. The deformation partitioning seems to the have played a key role, and the magnitude of each process has varied along strike of the orogen. To explain the formation of the inverted metamorphic sequence across the Lesser Himalayan Sequence (LHS) in eastern Bhutan, we used Raman spectroscopy of carbonaceous material (RSCM) to determine the peak metamorphic temperatures and Ti-in-quartz thermobarometry to determine the deformation temperatures combined with thermochronology including published apatite and zircon U-Th/He and fission-track data and new 40Ar/39Ar dating of muscovite. The dataset was inverted using 3D-thermal-kinematic modeling to constrain the ranges of geological parameters such as fault geometry and slip rates, location and rates of localized basal accretion, and thermal properties of the crust. RSCM results indicate that there are two peak temperature sequences separated by a major thrust within the LHS. The internal temperature sequence shows an inverted peak temperature gradient of 12 °C/km; in the external (southern) sequence, the peak temperatures are constant across the structural sequence. Thermo-kinematic modeling suggest that the thermochronologic and thermobarometric data are compatible with a two-stage scenario: an Early-Middle Miocene phase of fast overthrusting of a hot hanging wall over a downgoing footwall and inversion of the synkinematic isotherms, followed by the formation of the external duplex developed by dominant underthrusting and basal accretion. To reconcile our observations with the experimental data, we suggest that pervasive ductile deformation within the upper LHS and along the Main Central thrust zone at its top stopped at
Solve the partitioning problem by sticker model in DNA computing
QU Huiqin; LU Mingming; ZHU Hong
2004-01-01
The aim of this work is to solve the partitioning problem, the most canonical NP-complete problem containing numerical parameters, within the sticker model of DNA computing. We firstly design a parallel program for addition, and then give a program to calculate the subset sums of a set. At last, a program for partitioning is given, which contains the former programs. Furthermore, the correctness of each program is proved in this paper.
Partitioning properties of rare earth ores in China
CHI Ru'an; LI Zhongjun; PENG Cui; ZHU Guocai; XU Shengming
2005-01-01
The properties of rare earth partitioning in Chinese industrial rare earth ores were analyzed. Rare earth ores can be divided into the single-mineral type ore with bastnaesite, the multi-mineral type ore with bastnaesite and monazite, and the weathering crust type. Both the Bayan Obo rare earth ore and the Zhushan rare earth ore are a kind of mixed ore, consisting of bastnaesite and monazite. Their rare earth partitionings are strongly enriched in light rare earths, where CeO2 is 50% and the light rare earth partitioning is totally over 95%. The Mianning rare earth ore as well as the Weishan rare earth is a kind of rare earth ore only having bastnaesite. Their rare earth partitionings are also strongly enriched in light rare earths,in which CeO2 is 47% and the light rare earth partitioning is totally over 94%. For the weathering crust type rare earth ore,there are the Longnan rare earth ore, the Xunwu rare earth ore, and the middle yttrium and rich europium ore. In the Longnan rare earth ore, which is strongly enriched in heavy rare earths, Y2O3 is 64.83%, and the heavy and light rare earth partitionings are 89.40% and 10.53%, respectively. In the Xunwu rare earth ore, which is strongly enriched in light rare earths, CeO2 is 47.16%, and the light rare earth partitioning is totally 93.25%. Y and Eu are enriched in the middle yttrium and rich europium ore. Its middle rare earth partitioning is totally over 10%, and Eu2O3 and Y2O3 are over 0.5% and 20%,respectively, which are mainly industrial resources of the middle and the heavy rare earths.
On the partition property of measures on Pℋλ
Donald H. Pelletier
1982-01-01
Full Text Available The partition property for measures on Pℋλ was formulated by analogy with a property which Rowbottom [1] proved was possessed by every normal measure on a measurable cardinal. This property has been studied in [2], [3], and [4]. This note summarizes [5] and [6], which contain results relating the partition property with the extendibility of the measure and with an auxiliary combinatorial property introduced by Menas in [4]. Detailed proofs will appear in [5] and [6].
Entropy of Fuzzy Partitions and Entropy of Fuzzy Dynamical Systems
Dagmar Markechová
2016-01-01
Full Text Available In the paper we define three kinds of entropy of a fuzzy dynamical system using different entropies of fuzzy partitions. It is shown that different definitions of the entropy of fuzzy partitions lead to different notions of entropies of fuzzy dynamical systems. The relationships between these entropies are studied and connections with the classical case are mentioned as well. Finally, an analogy of the Kolmogorov–Sinai Theorem on generators is proved for fuzzy dynamical systems.
Review of partitioning proposals for spent nuclear fuels
Bowersox, D.F.
1976-07-01
The initial phase of a study about recovery of valuable fission products from spent nuclear fuels has been to review various partitioning proposals. This report briefly describes the aqueous Purex process, the salt transport process, melt refining, fluoride volatility process, and gravimetric separations. All these processes appear to be possible technically, but further research will be necessary to determine which are most feasible. This review includes general recommendations for experimental research and development of several partitioning options.
Kullback-Leibler Divergence Approach to Partitioned Update Kalman Filter
Raitoharju, Matti; García-Fernández, Ángel F.; Piché, Robert
2016-01-01
Kalman filtering is a widely used framework for Bayesian estimation. The partitioned update Kalman filter applies a Kalman filter update in parts so that the most linear parts of measurements are applied first. In this paper, we generalize partitioned update Kalman filter, which requires the use oft the second order extended Kalman filter, so that it can be used with any Kalman filter extension. To do so, we use a Kullback-Leibler divergence approach to measure the nonlinearity of the measure...
Partitioning Rectangular and Structurally Nonsymmetric Sparse Matrices for Parallel Processing
B. Hendrickson; T.G. Kolda
1998-09-01
A common operation in scientific computing is the multiplication of a sparse, rectangular or structurally nonsymmetric matrix and a vector. In many applications the matrix- transpose-vector product is also required. This paper addresses the efficient parallelization of these operations. We show that the problem can be expressed in terms of partitioning bipartite graphs. We then introduce several algorithms for this partitioning problem and compare their performance on a set of test matrices.
Partitioning-based mechanisms under personalized differential privacy
Li, Haoran; Xiong, Li; Ji, Zhanglong; Jiang, Xiaoqian
2017-01-01
Differential privacy has recently emerged in private statistical aggregate analysis as one of the strongest privacy guarantees. A limitation of the model is that it provides the same privacy protection for all individuals in the database. However, it is common that data owners may have different privacy preferences for their data. Consequently, a global differential privacy parameter may provide excessive privacy protection for some users, while insufficient for others. In this paper, we propose two partitioning-based mechanisms, privacy-aware and utility-based partitioning, to handle personalized differential privacy parameters for each individual in a dataset while maximizing utility of the differentially private computation. The privacy-aware partitioning is to minimize the privacy budget waste, while utility-based partitioning is to maximize the utility for a given aggregate analysis. We also develop a t-round partitioning to take full advantage of remaining privacy budgets. Extensive experiments using real datasets show the effectiveness of our partitioning mechanisms. PMID:28932827
Approximation Algorithms for Edge Partitioned Vertex Cover Problems
Bera, Suman Kalyan; Kumar, Amit; Roy, Sambuddha
2011-01-01
In the Partial Vertex Cover (PVC) problem we are given an undirected graph G = (V, E), a positive cost associated with each vertex and a positive integer k and the goal is to find a minimum cost subset of vertices S such that atleast k edges of the graph are covered. In this paper we consider two new generalization of the PVC problem. In the first variation which we call Partition Vertex Cover (Partition-VC) problem, the edges of the graph G are divided into n disjoint partitions $P_1, P_2... P_n$ and we have to select a minimum cost subset of vertices S such that atleast $k_i$ edges are covered from partition $P_i$. In the second variation which we call Knapsack Partition Vertex Cover (KPVC) problem, in addition to the previous conditions, each edge e has a profit $\\pi_{e}$ associated with it and we have an added knapsack constraint that the total profit of the covered edges in partition $P_i$ should be atleast $\\Pi_i$. We give an $O(log n)$ approximation for both the problems using a combination of determin...
Fat Polygonal Partitions with Applications to Visualization and Embeddings
de Berg, Mark; Sidiropoulos, Anastasios
2010-01-01
Let T be a rooted and weighted tree, where the weight of any node is equal to the sum of the weights of its children. The popular Treemap algorithm visualizes such a tree as a hierarchical partition of a square into rectangles, where the area of the rectangle corresponding to any node in T is equal to the weight of that node. The aspect ratio of the rectangles in such a rectangular partition necessarily depends on the weights and can become arbitrarily high. We introduce a new hierarchical partition scheme, called a polygonal partition, which uses convex polygons rather than just rectangles. We present two methods for constructing polygonal partitions, both having guarantees on the worst-case aspect ratio of the constructed polygons; in particular, both methods guarantee a bound on the aspect ratio that is independent of the weights of the nodes. We also consider rectangular partitions with slack, where the areas of the rectangles may differ slightly from the weights of the corresponding nodes. We show that t...
A novel partitioning method for block-structured adaptive meshes
Fu, Lin; Litvinov, Sergej; Hu, Xiangyu Y.; Adams, Nikolaus A.
2017-07-01
We propose a novel partitioning method for block-structured adaptive meshes utilizing the meshless Lagrangian particle concept. With the observation that an optimum partitioning has high analogy to the relaxation of a multi-phase fluid to steady state, physically motivated model equations are developed to characterize the background mesh topology and are solved by multi-phase smoothed-particle hydrodynamics. In contrast to well established partitioning approaches, all optimization objectives are implicitly incorporated and achieved during the particle relaxation to stationary state. Distinct partitioning sub-domains are represented by colored particles and separated by a sharp interface with a surface tension model. In order to obtain the particle relaxation, special viscous and skin friction models, coupled with a tailored time integration algorithm are proposed. Numerical experiments show that the present method has several important properties: generation of approximately equal-sized partitions without dependence on the mesh-element type, optimized interface communication between distinct partitioning sub-domains, continuous domain decomposition which is physically localized and implicitly incremental. Therefore it is particularly suitable for load-balancing of high-performance CFD simulations.
A novel partitioning method for block-structured adaptive meshes
Fu, Lin, E-mail: lin.fu@tum.de; Litvinov, Sergej, E-mail: sergej.litvinov@aer.mw.tum.de; Hu, Xiangyu Y., E-mail: xiangyu.hu@tum.de; Adams, Nikolaus A., E-mail: nikolaus.adams@tum.de
2017-07-15
We propose a novel partitioning method for block-structured adaptive meshes utilizing the meshless Lagrangian particle concept. With the observation that an optimum partitioning has high analogy to the relaxation of a multi-phase fluid to steady state, physically motivated model equations are developed to characterize the background mesh topology and are solved by multi-phase smoothed-particle hydrodynamics. In contrast to well established partitioning approaches, all optimization objectives are implicitly incorporated and achieved during the particle relaxation to stationary state. Distinct partitioning sub-domains are represented by colored particles and separated by a sharp interface with a surface tension model. In order to obtain the particle relaxation, special viscous and skin friction models, coupled with a tailored time integration algorithm are proposed. Numerical experiments show that the present method has several important properties: generation of approximately equal-sized partitions without dependence on the mesh-element type, optimized interface communication between distinct partitioning sub-domains, continuous domain decomposition which is physically localized and implicitly incremental. Therefore it is particularly suitable for load-balancing of high-performance CFD simulations.
Aharonov-Bohm Hamiltonians, isospectrality and minimal partitions
Bonnaillie-Noel, V [IRMAR, ENS Cachan Bretagne, Univ. Rennes 1, CNRS, UEB, av Robert Schuman, 35 170 Bruz (France); Helffer, B [Laboratoire de Mathematiques, Bat. 425, Univ Paris-Sud and CNRS, 91 405 Orsay Cedex (France); Hoffmann-Ostenhof, T [International Erwin Schroedinger Institute for Mathematical Physics, Boltzmanngasse 9, A-090 Wien (Austria)], E-mail: Virginie.Bonnaillie@bretagne.ens-cachan.fr, E-mail: Bernard.Helffer@math.u-psud.fr, E-mail: thoffman@esi.ac.at
2009-05-08
The spectral analysis of Aharonov-Bohm Hamiltonians with flux 1/2 leads surprisingly to a new insight on some questions of isospectrality appearing for example in Jakobson et al (2006 J. Comput. Appl. Math. 194 141-55) and Levitin et al (J. Phys. A: Math. Gen. 39 2073-82) and of minimal partitions (Helffer et al 2009 Ann. Inst. H. Poincare Anal. Non Lineaire 26 101-38). We will illustrate this point of view by discussing the question of spectral minimal 3-partitions for the rectangle. It has been observed in Helffer et al (2009 Ann. Inst. H. Poincare Anal. Non Lineaire 26 101-38) that the minimal 3-partition is obtained by the three nodal domains of the third eigenfunction corresponding to the three rectangles. We will describe a possible mechanism of transition for increasing a/b between these nodal minimal 3-partitions and non-nodal minimal 3-partitions at the value {radical}3/8 and discuss the existence of symmetric candidates for giving minimal 3-partitions when {radical}3/8
An Efficient Partitioning Oracle for Bounded-Treewidth Graphs
Edelman, Alan; Nguyen, Huy N; Onak, Krzysztof
2011-01-01
Partitioning oracles were introduced by Hassidim et al. (FOCS 2009) as a generic tool for constant-time algorithms. For any epsilon > 0, a partitioning oracle provides query access to a fixed partition of the input bounded-degree minor-free graph, in which every component has size poly(1/epsilon), and the number of edges removed is at most epsilon*n, where n is the number of vertices in the graph. However, the oracle of Hassidimet al. makes an exponential number of queries to the input graph to answer every query about the partition. In this paper, we construct an efficient partitioning oracle for graphs with constant treewidth. The oracle makes only O(poly(1/epsilon)) queries to the input graph to answer each query about the partition. Examples of bounded-treewidth graph classes include k-outerplanar graphs for fixed k, series-parallel graphs, cactus graphs, and pseudoforests. Our oracle yields poly(1/epsilon)-time property testing algorithms for membership in these classes of graphs. Another application of ...
Crowdsourcing Big Trace Data Filtering: a Partition-And Model
Yang, X.; Tang, L.
2016-06-01
GPS traces collected via crowdsourcing way are low-cost and informative and being as a kind of new big data source for urban geographic information extraction. However, the precision of crowdsourcing traces in urban area is very low because of low-end GPS data devices and urban canyons with tall buildings, thus making it difficult to mine high-precision geographic information such as lane-level road information. In this paper, we propose an efficient partition-and-filter model to filter trajectories, which includes trajectory partitioning and trajectory filtering. For the partition part, the partition with position and angle constrain algorithm is used to partition a trajectory into a set of sub-trajectories based on distance and angle constrains. Then, the trajectory filtering with expected accuracy method is used to filter the sub-trajectories according to the similarity between GPS tracking points and GPS baselines constructed by random sample consensus algorithm. Experimental results demonstrate that the proposed partition-and-filtering model can effectively filter the high quality GPS data from various crowdsourcing trace data sets with the expected accuracy.
High Pressure/Temperature Metal Silicate Partitioning of Tungsten
Shofner, G. A.; Danielson, L.; Righter, K.; Campbell, A. J.
2010-01-01
The behavior of chemical elements during metal/silicate segregation and their resulting distribution in Earth's mantle and core provide insight into core formation processes. Experimental determination of partition coefficients allows calculations of element distributions that can be compared to accepted values of element abundances in the silicate (mantle) and metallic (core) portions of the Earth. Tungsten (W) is a moderately siderophile element and thus preferentially partitions into metal versus silicate under many planetary conditions. The partitioning behavior has been shown to vary with temperature, silicate composition, oxygen fugacity, and pressure. Most of the previous work on W partitioning has been conducted at 1-bar conditions or at relatively low pressures, i.e. <10 GPa, and in two cases at or near 20 GPa. According to those data, the stronger influences on the distribution coefficient of W are temperature, composition, and oxygen fugacity with a relatively slight influence in pressure. Predictions based on extrapolation of existing data and parameterizations suggest an increased pressured dependence on metal/ silicate partitioning of W at higher pressures 5. However, the dependence on pressure is not as well constrained as T, fO2, and silicate composition. This poses a problem because proposed equilibration pressures for core formation range from 27 to 50 GPa, falling well outside the experimental range, therefore requiring exptrapolation of a parametereized model. Higher pressure data are needed to improve our understanding of W partitioning at these more extreme conditions.
Lanfear, Robert; Frandsen, Paul B; Wright, April M; Senfeld, Tereza; Calcott, Brett
2017-03-01
PartitionFinder 2 is a program for automatically selecting best-fit partitioning schemes and models of evolution for phylogenetic analyses. PartitionFinder 2 is substantially faster and more efficient than version 1, and incorporates many new methods and features. These include the ability to analyze morphological datasets, new methods to analyze genome-scale datasets, new output formats to facilitate interoperability with downstream software, and many new models of molecular evolution. PartitionFinder 2 is freely available under an open source license and works on Windows, OSX, and Linux operating systems. It can be downloaded from www.robertlanfear.com/partitionfinder. The source code is available at https://github.com/brettc/partitionfinder. © The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.
Interfacial thermodynamics and electrochemistry of protein partitioning in two-phase systems.
Fraaije, J.G.E.M.
1987-01-01
The subject of this thesis is protein partition between an aqueous salt solution and a surface or an apolair liquid and the concomitant co-partition of small ions. The extent of co-partitioning determines the charge regulation in the protein partitioning process.Chapters 2 and 3 deal with phenomenol
Partitioning of Nanoparticles into Organic Phases and Model Cells
Posner, J.D.; Westerhoff, P.; Hou, W-C.
2011-08-25
There is a recognized need to understand and predict the fate, transport and bioavailability of engineered nanoparticles (ENPs) in aquatic and soil ecosystems. Recent research focuses on either collection of empirical data (e.g., removal of a specific NP through water or soil matrices under variable experimental conditions) or precise NP characterization (e.g. size, degree of aggregation, morphology, zeta potential, purity, surface chemistry, and stability). However, it is almost impossible to transition from these precise measurements to models suitable to assess the NP behavior in the environment with complex and heterogeneous matrices. For decades, the USEPA has developed and applies basic partitioning parameters (e.g., octanol-water partition coefficients) and models (e.g., EPI Suite, ECOSAR) to predict the environmental fate, bioavailability, and toxicity of organic pollutants (e.g., pesticides, hydrocarbons, etc.). In this project we have investigated the hypothesis that NP partition coefficients between water and organic phases (octanol or lipid bilayer) is highly dependent on their physiochemical properties, aggregation, and presence of natural constituents in aquatic environments (salts, natural organic matter), which may impact their partitioning into biological matrices (bioaccumulation) and human exposure (bioavailability) as well as the eventual usage in modeling the fate and bioavailability of ENPs. In this report, we use the terminology "partitioning" to operationally define the fraction of ENPs distributed among different phases. The mechanisms leading to this partitioning probably involve both chemical force interactions (hydrophobic association, hydrogen bonding, ligand exchange, etc.) and physical forces that bring the ENPs in close contact with the phase interfaces (diffusion, electrostatic interactions, mixing turbulence, etc.). Our work focuses on partitioning, but also provides insight into the relative behavior of ENPs as either "more like
Partitioning of Nanoparticles into Organic Phases and Model Cells
Posner, J.D.; Westerhoff, P.; Hou, W-C.
2011-08-25
There is a recognized need to understand and predict the fate, transport and bioavailability of engineered nanoparticles (ENPs) in aquatic and soil ecosystems. Recent research focuses on either collection of empirical data (e.g., removal of a specific NP through water or soil matrices under variable experimental conditions) or precise NP characterization (e.g. size, degree of aggregation, morphology, zeta potential, purity, surface chemistry, and stability). However, it is almost impossible to transition from these precise measurements to models suitable to assess the NP behavior in the environment with complex and heterogeneous matrices. For decades, the USEPA has developed and applies basic partitioning parameters (e.g., octanol-water partition coefficients) and models (e.g., EPI Suite, ECOSAR) to predict the environmental fate, bioavailability, and toxicity of organic pollutants (e.g., pesticides, hydrocarbons, etc.). In this project we have investigated the hypothesis that NP partition coefficients between water and organic phases (octanol or lipid bilayer) is highly dependent on their physiochemical properties, aggregation, and presence of natural constituents in aquatic environments (salts, natural organic matter), which may impact their partitioning into biological matrices (bioaccumulation) and human exposure (bioavailability) as well as the eventual usage in modeling the fate and bioavailability of ENPs. In this report, we use the terminology "partitioning" to operationally define the fraction of ENPs distributed among different phases. The mechanisms leading to this partitioning probably involve both chemical force interactions (hydrophobic association, hydrogen bonding, ligand exchange, etc.) and physical forces that bring the ENPs in close contact with the phase interfaces (diffusion, electrostatic interactions, mixing turbulence, etc.). Our work focuses on partitioning, but also provides insight into the relative behavior of ENPs as either "more like
A Timing-Driven Partitioning System for Multiple FPGAs
Kalapi Roy
1996-01-01
Full Text Available Field-programmable systems with multiple FPGAs on a PCB or an MCM are being used by system designers when a single FPGA is not sufficient. We address the problem of partitioning a large technology mapped FPGA circuit onto multiple FPGA devices of a specific target technology. The physical characteristics of the multiple FPGA system (MFS pose additional constraints to the circuit partitioning algorithms: the capacity of each FPGA, the timing constraints, the number of I/Os per FPGA, and the pre-designed interconnection patterns of each FPGA and the package. Existing partitioning techniques which minimize just the cut sizes of partitions fail to satisfy the above challenges. We therefore present a timing driven N-way partitioning algorithm based on simulated annealing for technology-mapped FPGA circuits. The signal path delays are estimated during partitioning using a timing model specific to a multiple FPGA architecture. The model combines all possible delay factors in a system with multiple FPGA chips of a target technology. Furthermore, we have incorporated a new dynamic net-weighting scheme to minimize the number of pin-outs for each chip. Finally, we have developed a graph-based global router for pin assignment which can handle the pre-routed connections of our MFS structure. In order to reduce the time spent in the simulated annealing phase of the partitioner, clusters of circuit components are identified by a new linear-time bottom-up clustering algorithm. The annealing-based N-way partitioner executes four times faster using the clusters as opposed to a flat netlist with improved partitioning results. For several industrial circuits, our approach outperforms the recursive min-cut bi-partitioning algorithm by 35% in terms of nets cut. Our approach also outperforms an industrial FPGA partitioner by 73% on average in terms of unroutable nets. Using the performance optimization capabilities in our approach we have successfully partitioned the
The influence of hydrogen bonding on partition coefficients
Borges, Nádia Melo; Kenny, Peter W.; Montanari, Carlos A.; Prokopczyk, Igor M.; Ribeiro, Jean F. R.; Rocha, Josmar R.; Sartori, Geraldo Rodrigues
2017-02-01
This Perspective explores how consideration of hydrogen bonding can be used to both predict and better understand partition coefficients. It is shown how polarity of both compounds and substructures can be estimated from measured alkane/water partition coefficients. When polarity is defined in this manner, hydrogen bond donors are typically less polar than hydrogen bond acceptors. Analysis of alkane/water partition coefficients in conjunction with molecular electrostatic potential calculations suggests that aromatic chloro substituents may be less lipophilic than is generally believed and that some of the effect of chloro-substitution stems from making the aromatic π-cloud less available to hydrogen bond donors. Relationships between polarity and calculated hydrogen bond basicity are derived for aromatic nitrogen and carbonyl oxygen. Aligned hydrogen bond acceptors appear to present special challenges for prediction of alkane/water partition coefficients and this may reflect `frustration' of solvation resulting from overlapping hydration spheres. It is also shown how calculated hydrogen bond basicity can be used to model the effect of aromatic aza-substitution on octanol/water partition coefficients.
Integrating GIS and genetic algorithms for automating land partitioning
Demetriou, Demetris; See, Linda; Stillwell, John
2014-08-01
Land consolidation is considered to be the most effective land management planning approach for controlling land fragmentation and hence improving agricultural efficiency. Land partitioning is a basic process of land consolidation that involves the subdivision of land into smaller sub-spaces subject to a number of constraints. This paper explains the development of a module called LandParcelS (Land Parcelling System) that integrates geographical information systems and a genetic algorithm to automate the land partitioning process by designing and optimising land parcels in terms of their shape, size and value. This new module has been applied to two land blocks that are part of a larger case study area in Cyprus. Partitioning is carried out by guiding a Thiessen polygon process within ArcGIS and it is treated as a multiobjective problem. The results suggest that a step forward has been made in solving this complex spatial problem, although further research is needed to improve the algorithm. The contribution of this research extends land partitioning and space partitioning in general, since these approaches may have relevance to other spatial processes that involve single or multi-objective problems that could be solved in the future by spatial evolutionary algorithms.
The influence of hydrogen bonding on partition coefficients
Borges, Nádia Melo; Kenny, Peter W.; Montanari, Carlos A.; Prokopczyk, Igor M.; Ribeiro, Jean F. R.; Rocha, Josmar R.; Sartori, Geraldo Rodrigues
2017-01-01
This Perspective explores how consideration of hydrogen bonding can be used to both predict and better understand partition coefficients. It is shown how polarity of both compounds and substructures can be estimated from measured alkane/water partition coefficients. When polarity is defined in this manner, hydrogen bond donors are typically less polar than hydrogen bond acceptors. Analysis of alkane/water partition coefficients in conjunction with molecular electrostatic potential calculations suggests that aromatic chloro substituents may be less lipophilic than is generally believed and that some of the effect of chloro-substitution stems from making the aromatic π-cloud less available to hydrogen bond donors. Relationships between polarity and calculated hydrogen bond basicity are derived for aromatic nitrogen and carbonyl oxygen. Aligned hydrogen bond acceptors appear to present special challenges for prediction of alkane/water partition coefficients and this may reflect `frustration' of solvation resulting from overlapping hydration spheres. It is also shown how calculated hydrogen bond basicity can be used to model the effect of aromatic aza-substitution on octanol/water partition coefficients.
pTAR-encoded proteins in plasmid partitioning.
Kalnin, K; Stegalkina, S; Yarmolinsky, M
2000-04-01
Partition cassettes, essential for the segregational stability of low-copy-number bacterial plasmids, typically encode two autoregulated proteins and an adjacent cis-acting centromere analog to which one or perhaps both proteins bind. The diminutive partition region of pTAR of Agrobacterium spp. was reported to be exceptional, encoding only a single protein, ParA (D. R. Gallie and C. I. Kado, J. Mol. Biol. 193:465-478, 1987). However, resequencing of the region revealed two small downstream genes, parB and orf-84, of which only parB was found to be essential for partitioning in A. tumefaciens. Purified ParA exhibited a weak ATPase activity that was modestly increased by nonspecific DNA. ParB bound in vitro to repeated sequences present in a region, parS, that possesses centromere and operator functions and within which we identified the primary transcription start site by primer extension. In certain respects the Par proteins behave normally in the foreign host Escherichia coli. In E. coli, as in A. tumefaciens, ParB repressed the partition operon; ParA, inactive alone, augmented this repression. Functional similarities between the partition system of pTAR and those of other plasmids and bacteria are prominent, despite differences in size, organization, and amino acid sequence.
Fast Balanced Partitioning of Grid Graphs is Hard
Feldmann, Andreas Emil
2011-01-01
We consider the k-Balanced Partitioning problem in which the n vertices of a graph are to be partitioned into k sets of size at most n/k while minimising the cut size, which is the number of edges cut. Due to our application we are interested in fast algorithms that will solve the problem on solid grid graphs. A grid graph is a finite subgraph of the infinite 2D grid. We call it solid if it is connected and has no holes. We are able to harness some recent results on the structure of cuts in solid grid graphs in order to improve the runtime of an algorithm by Simon and Teng for these graphs. This algorithm will compute a solution in which the set sizes of the partition are at most 2n/k . The cut size deviates by at most a factor of O(log k) from an optimal solution to k-Balanced Partitioning. The main contribution of our work however is a proof that shows that, unless P=NP, no FPTAS exists that will compute partitions in which the set sizes are at most (1 + \\eps)n/k for any \\eps > 0. This is true even if the c...
Bipartite-Oriented Distributed Graph Partitioning for Big Learning
陈榕; 陈海波; 臧斌宇; 施佳鑫
2015-01-01
Many machine learning and data mining (MLDM) problems like recommendation, topic modeling, and medical diagnosis can be modeled as computing on bipartite graphs. However, most distributed graph-parallel systems are oblivious to the unique characteristics in such graphs and existing online graph partitioning algorithms usually cause excessive repli-cation of vertices as well as significant pressure on network communication. This article identifies the challenges and oppor-tunities of partitioning bipartite graphs for distributed MLDM processing and proposes BiGraph, a set of bipartite-oriented graph partitioning algorithms. BiGraph leverages observations such as the skewed distribution of vertices, discriminated computation load and imbalanced data sizes between the two subsets of vertices to derive a set of optimal graph partition-ing algorithms that result in minimal vertex replication and network communication. BiGraph has been implemented on PowerGraph and is shown to have a performance boost up to 17.75X (from 1.16X) for four typical MLDM algorithms, due to reducing up to 80%vertex replication, and up to 96%network traﬃc.
Whole shoot mineral partitioning and accumulation in pea (Pisum sativum).
Sankaran, Renuka P; Grusak, Michael A
2014-01-01
Several grain legumes are staple food crops that are important sources of minerals for humans; unfortunately, our knowledge is incomplete with respect to the mechanisms of translocation of these minerals to the vegetative tissues and loading into seeds. Understanding the mechanism and partitioning of minerals in pea could help in developing cultivars with high mineral density. A mineral partitioning study was conducted in pea to assess whole-plant growth and mineral content and the potential source-sink remobilization of different minerals, especially during seed development. Shoot and root mineral content increased for all the minerals, although tissue-specific partitioning differed between the minerals. Net remobilization was observed for P, S, Cu, and Fe from both the vegetative tissues and pod wall, but the amounts remobilized were much below the total accumulation in the seeds. Within the mature pod, more minerals were partitioned to the seed fraction (>75%) at maturity than to the pod wall for all the minerals except Ca, where only 21% was partitioned to the seed fraction. Although there was evidence for net remobilization of some minerals from different tissues into seeds, continued uptake and translocation of minerals to source tissues during seed fill is as important, if not more important, than remobilization of previously stored minerals.
Lex-Partitioning: A New Option for BDD Search
Stefan Edelkamp
2012-10-01
Full Text Available For the exploration of large state spaces, symbolic search using binary decision diagrams (BDDs can save huge amounts of memory and computation time. State sets are represented and modified by accessing and manipulating their characteristic functions. BDD partitioning is used to compute the image as the disjunction of smaller subimages. In this paper, we propose a novel BDD partitioning option. The partitioning is lexicographical in the binary representation of the states contained in the set that is represented by a BDD and uniform with respect to the number of states represented. The motivation of controlling the state set sizes in the partitioning is to eventually bridge the gap between explicit and symbolic search. Let n be the size of the binary state vector. We propose an O(n ranking and unranking scheme that supports negated edges and operates on top of precomputed satcount values. For the uniform split of a BDD, we then use unranking to provide paths along which we partition the BDDs. In a shared BDD representation the efforts are O(n. The algorithms are fully integrated in the CUDD library and evaluated in strongly solving general game playing benchmarks.
Whole shoot mineral partitioning and accumulation in pea (Pisum sativum
Renuka P Sankaran
2014-04-01
Full Text Available Several grain legumes are staple food crops that are important sources of minerals for humans; unfortunately, our knowledge is incomplete with respect to the mechanisms of translocation of these minerals to the vegetative tissues and loading into seeds. Understanding the mechanism and partitioning of minerals in pea could help in developing cultivars with high mineral density. A mineral partitioning study was conducted in pea to assess whole-plant growth and mineral content and the potential source-sink remobilization of different minerals, especially during seed development. Shoot and root mineral content increased for all the minerals, although tissue-specific partitioning differed between the minerals. Net remobilization was observed for P, S, Cu, and Fe from both the vegetative tissues and pod wall, but the amounts remobilized were much below the total accumulation in the seeds. Within the mature pod, more minerals were partitioned to the seed fraction (>75% at maturity than to the pod wall for all the minerals except Ca, where only 21% was partitioned to the seed fraction. Although there was evidence for net remobilization of some minerals from different tissues into seeds, continued uptake and translocation of minerals to source tissues during seed fill is as important, if not more important, than remobilization of previously stored minerals.
Morkunas, Iwona; Narożna, Dorota; Nowak, Witold; Samardakiewicz, Sławomir; Remlein-Starosta, Dorota
2011-03-15
This study investigated the effects of cross-talk interactions of sucrose and infection caused by a pathogenic fungus Fusarium oxysporum f.sp. lupini on the regulation of the phenylpropanoid pathway, i.e. the level of expression of genes encoding enzymes participating in flavonoid biosynthesis, as well as cell location and accumulation of these compounds in embryo axes of Lupinus luteus L. cv. Polo. Embryo axes, both non-inoculated and inoculated, were cultured for 96h on Heller medium with 60mM sucrose (+Sn and +Si) or without it (-Sn and -Si). Real-time RT-PCR to assess expression levels of the flavonoid biosynthetic genes, phenylalanine ammonialyase (PAL), chalcone synthase (CHS), chalcone isomerase (CHI) and isoflavone synthase (IFS) were used. Sucrose alone strongly stimulated the expression of these genes. There was a very high expression level of these genes in +Si embryo axes in the early phase of infection. Signal amplification by sucrose and the infection was most intense in the 48-h +Si axes, resulting in the highest level of expression of flavonoid biosynthetic genes. In -Si tissues, the expression level of these genes increased at 48 and 72h after inoculation relative to 24h; however, the relative level of expression was much lower than in +Si axes, except at 72h for PAL and CHS.Moreover, at 48h of culture, considerably higher activity of CHI (EC 5.5.1.6) was observed in axes with a high level of sucrose than in those with a sucrose deficit. CHI activity in +Si axes at 48 and 96h post-inoculation was over 1.5 and 2 times higher than that in +Sn axes, as well as higher than in -Si axes.Observations of yellow lupine embryo axes under a confocal microscope showed an increased post-infection accumulation of flavonoids, particularly in cells of embryo axes infected with F. oxysporum and cultured on a medium containing sucrose (+Si). Up to 48h post-infection in +Si axes, a very intensive emission of green fluorescence was observed, indicating high
Fortunato, Alessandro Antônio; da Silva, Washington Luís; Rodrigues, Fabrício Ávila
2014-06-01
Fusarium wilt, caused by Fusarium oxysporum f. sp. cubense, is a disease that causes large reductions in banana yield worldwide. Considering the importance of silicon (Si) to potentiate the resistance of several plant species to pathogen infection, this study aimed to investigate, at the histochemical level, whether this element could enhance the production of phenolics on the roots of banana plants in response to F. oxysporum f. sp. cubense infection. Plants of cultivar Maçã, which is susceptible to F. oxysporum f. sp. cubense, were grown in plastic pots amended with 0 (-Si) or 0.39 g of Si (+Si) per kilogram of soil and inoculated with race 1 of F. oxysporum f. sp. cubense. The root Si concentration was increased by 35.6% for +Si plants in comparison to the -Si plants, which contributed to a 27% reduction in the symptoms of Fusarium wilt on roots. There was an absence of fluorescence for the root sections of the -Si plants treated with the Neu and Wilson's reagents. By contrast, for the root sections obtained from the +Si plants treated with Neu's reagent, strong yellow-orange fluorescence was observed in the phloem, and lemon-yellow fluorescence was observed in the sclerenchyma and metaxylem vessels, indicating the presence of flavonoids. For the root sections of the +Si plants treated with Wilson's reagent, orange-yellowish autofluorescence was more pronounced around the phloem vessels, and yellow fluorescence was more pronounced around the metaxylem vessels, also indicating the presence of flavonoids. Lignin was more densely deposited in the cortex of the roots of the +Si plants than for the -Si plants. Dopamine was barely detected in the roots of the -Si plants after using the lactic and glyoxylic acid stain, but was strongly suspected to occur on the phloem and metaxylem vessels of the roots of the +Si plants as confirmed by the intense orange-yellow fluorescence. The present study provides new evidence of the pivotal role of the phenylpropanoid pathway in
Heating performance investigation of a bidirectional partition fluid thermal diode
Fang, Xiande; Xia, Lulu [Institute of Air Conditioning and Refrigeration, Nanjing University of Aeronautics and Astronautics, 29 Yudao Street, Nanjing, Jiangsu Province 210016 (China)
2010-03-15
A novel thermal diode, bidirectional partition fluid thermal diode (BPFTD) that is fabricated by integrating a thermal insulation partition and a movable control blade into a water tank, is proposed. The bidirectional configuration allows the BPFTD to serve both passive solar heating in winter and passive cooling in summer. BPFTD heating performances are tested with two side-by-side hot boxes and compared experimentally with a water-wall having optimum thickness. Two stages of experiments are conducted. The first stage is to investigate an appropriate position of BPFTD partition, and the second compares the BPFTD with the water-wall. The test results show that the BPFTD has much better heating performances than the water-wall. Analysis indicates that the BPFTD may increase heat supply by around 140% when a single glazing cover without night insulation is used and by around 70% in case of using a double glazing cover without night insulation. (author)
On matrix model partition functions for QCD with chemical potential
Akemann, G; Vernizzi, G
2004-01-01
Partition functions of two different matrix models for QCD with chemical potential are computed for an arbitrary number of quark and complex conjugate anti-quark flavors. In the large-N limit of weak nonhermiticity complete agreement is found between the two models. This supports the universality of such fermionic partition functions, that is of products of characteristic polynomials in the complex plane. In the strong nonhermiticity limit agreement is found for an equal number of quark and conjugate flavours. For a general flavor content the equality of partition functions holds only for small chemical potential. The chiral phase transition is analyzed for an arbitrary number of quarks, where the free energy presents a discontinuity of first order at a critical chemical potential. In the case of nondegenerate flavors there is first order phase transition for each separate mass scale.
Multiplicity of Summands in the Random Partitions of an Integer
Ghurumuruhan Ganesan
2013-02-01
In this paper, we prove a conjecture of Yakubovich regarding limit shapes of `slices’ of two-dimensional (2D) integer partitions and compositions of when the number of summands $m\\sim An^$ for some >0 and $ < \\frac{1}{2}$. We prove that the probability that there is a summand of multiplicity in any randomly chosen partition or composition of an integer goes to zero asymptotically with provided is larger than a critical value. As a corollary, we strengthen a result due to Erdös and Lehner (Duke Math. J. 8(1941) 335–345) that concerns the relation between the number of integer partitions and compositions when $=\\frac{1}{3}$.
Partitioning problems in parallel, pipelined, and distributed computing
Bokhari, Shahid H.
1988-01-01
The problem of optimally assigning the modules of a parallel program over the processors of a multiple-computer system is addressed. A sum-bottleneck path algorithm is developed that permits the efficient solution of many variants of this problem under some constraints on the structure of the partitions. In particular, the following problems are solved optimally for a single-host, multiple-satellite system: partitioning multiple chain-structured parallel programs, multiple arbitrarily structured serial programs, and single-tree structured parallel programs. In addition, the problem of partitioning chain-structured parallel programs across chain-connected systems is solved under certain constraints. All solutions for parallel programs are equally applicable to pipelined programs. These results extend prior research in this area by explicitly taking concurrency into account and permit the efficient utilization of multiple-computer architectures for a wide range of problems of practical interest.
New Model and Algorithm for Hardware/Software Partitioning
Ji-Gang Wu; Thambipillai Srikanthan; Guang-Wei Zou
2008-01-01
This paper focuses on the algorithmic aspects for the hardware/software (HW/SW) partitioning which searches a reasonable composition of hardware and software components which not only satisfies the constraint of hardware area but also optimizes the execution time. The computational model is extended so that all possible types of communications can be taken into account for the HW/SW partitioning. Also, a new dynamic programming algorithm is proposed on the basis of the computational model, in which source data, rather than speedup in previous work, of basic scheduling blocks are directly utilized to calculate the optimal solution. The proposed algorithm runs in O(n. A) for n code fragments and the available hardware area A. Simulation results show that the proposed algorithm solves the HW/SW partitioning without increase in running time, compared with the algorithm cited in the literature.
Partition function zeros of an Ising spin glass
Damgaard, P H
1995-01-01
We study the pattern of zeros emerging from exact partition function evaluations of Ising spin glasses on conventional finite lattices of varying sizes. A large number of random bond configurations are probed in the framework of quenched averages. This study is motivated by the relationship between hierarchical lattice models whose partition function zeros fall on Julia sets and chaotic renormalization flows in such models with frustration, and by the possible connection of the latter with spin glass behaviour. In any finite volume, the simultaneous distribution of the zeros of all partition functions can be viewed as part of the more general problem of finding the location of all the zeros of a certain class of random polynomials with positive integer coefficients. Some aspects of this problem have been studied in various branches of mathematics, and we show how polynomial mappings which are used in graph theory to classify graphs, may help in characterizing the distribution of zeros. We finally discuss the ...
Multi-partite entanglement in a driven qubit network
Sauer, Simeon; Buchleitner, Andreas [Physikalisches Institut, Albert-Ludwigs-Universitaet, Hermann-Herder-Str. 3, D-79104 Freiburg (Germany); Mintert, Florian [Physikalisches Institut, Albert-Ludwigs-Universitaet, Hermann-Herder-Str. 3, D-79104 Freiburg (Germany); Freiburg Institute for Advanced Studies, Albert-Ludwigs-Universitaet Freiburg, Albertstrass e 19, D-79104 Freiburg (Germany)
2011-07-01
Periodic driving of a composite quantum system can induce entanglement that significantly exceeds the threshold of the static case. Alike general resonance phenomena this enhancement of entanglement occurs for very specific amplitudes and frequencies of the driving fields. We aim to develop a general understanding of the underlying mechanisms. To this end, we consider a multi-partite quantum system that consists of several weakly coupled spins and study the interplay of periodic driving and multi-partite entanglement within the Floquet picture; i.e. we identify the dressed states of the driven system and quantify their entanglement by means of a multi-partite entanglement measure. Indeed, at well-defined values of the driving frequency and amplitude, we find a resonant behavior of entanglement. The occurrence of these resonances can be understood in terms of the single particle Floquet spectra only, what permits to predict resonances without solving the underlying many-body problem.
Asymptotics of a singularly perturbed GUE partition function
Mezzadri, F
2010-01-01
We study the double scaling asymptotic limit for large matrix dimension N of the partition function of the unitary ensemble with weight exp(-z^2/2x^2 + t/x - x^2/2). We derive the asymptotics of the partition function when z and t are of O(N^(-1/2)). Our results are obtained using the Deift-Zhou steepest descent method and are expressed in terms of a solution of a fourth order nonlinear differential equation. We also compute the asymptotic limit of such a solution when zN^(1/2) -> 0. The behavior of this solution, together with fact that the partition function is an odd function in the variable t, allows us to reduce such a fourth order differential equation into a second order nonlinear ODE.
Rigidity-Preserving Team Partitions in Multiagent Networks.
Carboni, Daniela; Williams, Ryan K; Gasparri, Andrea; Ulivi, Giovanni; Sukhatme, Gaurav S
2015-12-01
Motivated by the strong influence network rigidity has on collaborative systems, in this paper, we consider the problem of partitioning a multiagent network into two sub-teams, a bipartition, such that the resulting sub-teams are topologically rigid. In this direction, we determine the existence conditions for rigidity-preserving bipartitions, and provide an iterative algorithm that identifies such partitions in polynomial time. In particular, the relationship between rigid graph partitions and the previously identified Z-link edge structure is given, yielding a feasible direction for graph search. Adapting a supergraph search mechanism, we then detail a methodology for discerning graphs cuts that represent valid rigid bipartitions. Next, we extend our methods to a decentralized context by exploiting leader election and an improved graph search to evaluate feasible cuts using only local agent-to-agent communication. Finally, full algorithm details and pseudocode are provided, together with simulation results that verify correctness and demonstrate complexity.
Time Domain Partitioning of Electricity Production Cost Simulations
Barrows, C.; Hummon, M.; Jones, W.; Hale, E.
2014-01-01
Production cost models are often used for planning by simulating power system operations over long time horizons. The simulation of a day-ahead energy market can take several weeks to compute. Tractability improvements are often made through model simplifications, such as: reductions in transmission modeling detail, relaxation of commitment variable integrality, reductions in cost modeling detail, etc. One common simplification is to partition the simulation horizon so that weekly or monthly horizons can be simulated in parallel. However, horizon partitions are often executed with overlap periods of arbitrary and sometimes zero length. We calculate the time domain persistence of historical unit commitment decisions to inform time domain partitioning of production cost models. The results are implemented using PLEXOS production cost modeling software in an HPC environment to improve the computation time of simulations while maintaining solution integrity.
DPCube: Differentially Private Histogram Release through Multidimensional Partitioning
Xiao, Yonghui; Fan, Liyue; Goryczka, Slawomir
2012-01-01
Differential privacy is a strong notion for protecting individual privacy in privacy preserving data analysis or publishing. In this paper, we study the problem of differentially private histogram release for random workloads. We study two multidimensional partitioning strategies including: 1) a baseline cell-based partitioning strategy for releasing an equi-width cell histogram, and 2) an innovative 2-phase kd-tree based partitioning strategy for releasing a v-optimal histogram. We formally analyze the utility of the released histograms and quantify the errors for answering linear queries such as counting queries. We formally characterize the property of the input data that will guarantee the optimality of the algorithm. Finally, we implement and experimentally evaluate several applications using the released histograms, including counting queries, classification, and blocking for record linkage and show the benefit of our approach.
Vertex partitions of r-edge-colored graphs
JIN Ze-min; LI Xue-liang
2008-01-01
Let G be an edge-colored graph. The monochromatic tree partition problem is to find the minimum number of vertex disjoint monochromatic trees to cover the all vertices of G. In the authors' previous work,it has been proved that the problem is NP-complete and there does not exist any constant factor approximation algorithm for it unless P = NP. In this paper the authors show that for any fixed integer r ≥ 5,if the edges of a graph G are colored by r colors,called an r-edge-colored graph,the problem remains NP-complete. Similar result holds for the monochromatic path (cycle) partition problem. Therefore,to find some classes of interesting graphs for which the problem can be solved in polynomial time seems interesting.A linear time algorithm for the monochromatic path partition problem for edge-colored trees is given.
Approximation methods for the partition functions of anharmonic systems
Lew, P.; Ishida, T.
1979-07-01
The analytical approximations for the classical, quantum mechanical and reduced partition functions of the diatomic molecule oscillating internally under the influence of the Morse potential have been derived and their convergences have been tested numerically. This successful analytical method is used in the treatment of anharmonic systems. Using Schwinger perturbation method in the framework of second quantization formulism, the reduced partition function of polyatomic systems can be put into an expression which consists separately of contributions from the harmonic terms, Morse potential correction terms and interaction terms due to the off-diagonal potential coefficients. The calculated results of the reduced partition function from the approximation method on the 2-D and 3-D model systems agree well with the numerical exact calculations.
Wave spectra partitioning and long term statistical distribution
Portilla-Yandún, Jesús; Cavaleri, Luigi; Van Vledder, Gerbrant Ph.
2015-12-01
A new method is presented for a physically based statistical description of wind wave climatology. The method applies spectral partitioning to identify individual wave systems (partitions) in time series of 2D-wave spectra, followed by computing the probability of occurrence of their (peak) position in frequency-direction space. This distribution can be considered as a spectral density function to which another round of partitioning is applied to obtain spectral domains, each representing a typical wave system or population in a statistical sense. This two-step partitioning procedure allows identifying aggregate wave systems without the need to discuss specific characteristics as wind sea and swell systems. We suggest that each of these aggregate wave systems (populations) is linked to a specific generation pattern opening the way to dedicated analyses. Each population (of partitions) can be subjected to further analyses to add dimension carrying information based on integrated wave parameters of each partition, such as significant wave height, wave age, mean wave period and direction, among others. The new method is illustrated by analysing model spectra from a numerical wave prediction model and measured spectra from a directional wave buoy located in the Southern North Sea. It is shown that these two sources of information yield consistent results. Examples are given of computing the statistical distribution of significant wave height, spectral energy distribution and the spatial variation of wind wave characteristics along a north-south transect in the North Sea. Wind or wave age information can be included as an extra attribute of the members of a population to label them as wind sea or swell systems. Finally, suggestions are given for further applications of this new method.
Revisiting noninteracting string partition functions in Rindler space
Mertens, Thomas G.; Verschelde, Henri; Zakharov, Valentin I.
2016-05-01
We revisit noninteracting string partition functions in Rindler space by summing over fields in the spectrum. In field theory, the total partition function splits in a natural way into a piece that does not contain surface terms and a piece consisting of solely the so-called edge states. For open strings, we illustrate that surface contributions to the higher-spin fields correspond to open strings piercing the Rindler origin, unifying the higher-spin surface contributions in string language. For closed strings, we demonstrate that the string partition function is not quite the same as the sum over the partition functions of the fields in the spectrum: an infinite overcounting is present for the latter. Next we study the partition functions obtained by excluding the surface terms. Using recent results of He et al. [J. High Energy Phys. 05 (2015) 106], this construction, first done by Emparan [arXiv:hep-th/9412003], can be put on much firmer ground. We generalize to type II and heterotic superstrings and demonstrate modular invariance. All of these exhibit an IR divergence that can be interpreted as a maximal acceleration close to the black hole horizon. Ultimately, since these partition functions are only part of the full story, divergences here should not be viewed as a failure of string theory: maximal acceleration is a feature of a faulty treatment of the higher-spin fields in the string spectrum. We comment on the relevance of this to Solodukhin's recent proposal [Phys. Rev. D 91, 084028 (2015)]. A possible link with the firewall paradox is apparent.
Designing lipids for selective partitioning into liquid ordered membrane domains.
Momin, Noor; Lee, Stacey; Gadok, Avinash K; Busch, David J; Bachand, George D; Hayden, Carl C; Stachowiak, Jeanne C; Sasaki, Darryl Y
2015-04-28
Self-organization of lipid molecules into specific membrane phases is key to the development of hierarchical molecular assemblies that mimic cellular structures. While the packing interaction of the lipid tails should provide the major driving force to direct lipid partitioning to ordered or disordered membrane domains, numerous examples show that the headgroup and spacer play important but undefined roles. We report here the development of several new biotinylated lipids that examine the role of spacer chemistry and structure on membrane phase partitioning. The new lipids were prepared with varying lengths of low molecular weight polyethylene glycol (EGn) spacers to examine how spacer hydrophilicity and length influence their partitioning behavior following binding with FITC-labeled streptavidin in liquid ordered (Lo) and liquid disordered (Ld) phase coexisting membranes. Partitioning coefficients (Kp Lo/Ld) of the biotinylated lipids were determined using fluorescence measurements in studies with giant unilamellar vesicles (GUVs). Compared against DPPE-biotin, DPPE-cap-biotin, and DSPE-PEG2000-biotin lipids, the new dipalmityl-EGn-biotin lipids exhibited markedly enhanced partitioning into liquid ordered domains, achieving Kp of up to 7.3 with a decaethylene glycol spacer (DP-EG10-biotin). We further demonstrated biological relevance of the lipids with selective partitioning to lipid raft-like domains observed in giant plasma membrane vesicles (GPMVs) derived from mammalian cells. Our results found that the spacer group not only plays a pivotal role for designing lipids with phase selectivity but may also influence the structural order of the domain assemblies.
Aharonov-Bohm Hamiltonians, isospectrality and minimal partitions
Bonnaillie-Noël, V.; Helffer, B.; Hoffmann-Ostenhof, T.
2009-05-01
The spectral analysis of Aharonov-Bohm Hamiltonians with flux \\frac12 leads surprisingly to a new insight on some questions of isospectrality appearing for example in Jakobson et al (2006 J. Comput. Appl. Math. 194 141-55) and Levitin et al (J. Phys. A: Math. Gen. 39 2073-82) and of minimal partitions (Helffer et al 2009 Ann. Inst. H. Poincaré Anal. Non Linéaire 26 101-38). We will illustrate this point of view by discussing the question of spectral minimal 3-partitions for the rectangle \\big]{-}\\frac a2,\\frac a2\\big[\\times \\big]{-}\\frac b2,\\frac b2\\big[ , with 0 < a <= b. It has been observed in Helffer et al (2009 Ann. Inst. H. Poincaré Anal. Non Linéaire 26 101-38) that when 0<\\frac ab < \\sqrt{\\vphantom{A^A}\\smash{\\\\frac 38}} the minimal 3-partition is obtained by the three nodal domains of the third eigenfunction corresponding to the three rectangles \\big]{-}\\frac a2,\\frac a2\\big[\\times \\big] {-}\\frac b2,-\\frac b6\\big[, \\big]{-}\\frac a2,\\frac a2\\big[\\times \\big]{-}\\frac b6,\\frac b6\\big[ and \\big]{-}\\frac a2,\\frac a2\\big[\\times \\big] \\frac b6, \\frac b2\\big[ . We will describe a possible mechanism of transition for increasing \\frac ab between these nodal minimal 3-partitions and non-nodal minimal 3-partitions at the value \\sqrt{\\vphantom{A^A}\\smash{\\\\frac 38}} and discuss the existence of symmetric candidates for giving minimal 3-partitions when \\sqrt{\\vphantom{A^A}\\smash{\\\\frac 38}} <\\frac ab \\leq 1 . Numerical analysis leads very naturally to nice questions of isospectrality which are solved by the introduction of Aharonov-Bohm Hamiltonians or by going on the double covering of the punctured rectangle.
Variable length adjacent partitioning for PTS based PAPR reduction of OFDM signal
Ibraheem, Zeyid T.; Rahman, Md. Mijanur; Yaakob, S. N.; Razalli, Mohammad Shahrazel; Kadhim, Rasim A. [School of Computer and Communication Engineering, Universiti Malaysia Perlis, 02600 Arau, Perlis (Malaysia)
2015-05-15
Peak-to-Average power ratio (PAPR) is a major drawback in OFDM communication. It leads the power amplifier into nonlinear region operation resulting into loss of data integrity. As such, there is a strong motivation to find techniques to reduce PAPR. Partial Transmit Sequence (PTS) is an attractive scheme for this purpose. Judicious partitioning the OFDM data frame into disjoint subsets is a pivotal component of any PTS scheme. Out of the existing partitioning techniques, adjacent partitioning is characterized by an attractive trade-off between cost and performance. With an aim of determining effects of length variability of adjacent partitions, we performed an investigation into the performances of a variable length adjacent partitioning (VL-AP) and fixed length adjacent partitioning in comparison with other partitioning schemes such as pseudorandom partitioning. Simulation results with different modulation and partitioning scenarios showed that fixed length adjacent partition had better performance compared to variable length adjacent partitioning. As expected, simulation results showed a slightly better performance of pseudorandom partitioning technique compared to fixed and variable adjacent partitioning schemes. However, as the pseudorandom technique incurs high computational complexities, adjacent partitioning schemes were still seen as favorable candidates for PAPR reduction.
The part-frequency matrices of a partition
William J. Keith
2016-09-01
Full Text Available A new combinatorial object is introduced, the part-frequency matrix sequence of a partition, whichis elementary to describe and is naturally motivated by Glaisher’s bijection. We prove results thatsuggest surprising usefulness for such a simple tool, including the existence of a related statistic thatrealizes every possible Ramanujan-type congruence for the partition function. To further exhibit itsresearch utility, we give an easy generalization of a theorem of Andrews, Dixit and Yee [1] on the mocktheta functions. Throughout, we state a number of observations and questions that can motivate anarray of investigations.
Distribution of a Certain Partition Function Modulo Powers of Primes
Hei-Chi CHAN
2011-01-01
In this paper, we study a certain partition function a(n) defined by Σn≥0 a(n)qn :=∏n=1(1-qn)-1(1-q2n)-1.We prove that given a positive integer j≥1 and a prime m≥5,there are infinitely many congruences of the type a(An + B)≡0 (mod mj). This work is inspired by Ono's ground breaking result in the study of the distribution of the partition function p(n).
Approximation property of partition of unity and its applications
Yinhe WANG; Zhiyuan LI; Siying ZHANG
2004-01-01
The linear combination of certain partition of unity,subordinate to certain open covering of a compact set,is proved to be capable of approximating to a continuous function at arbitrarily precision.By using proper open covering and partition of unity,the robust nonlinear controllers and adaptive laws are designed for a class of nonlinear systems with uncertainties.The states and parameters of the closed-loop systems can be stabilized in the meaning of UUB (uniformly ultimately bounded) via the robust nonlinear controllers and adaptive laws.Finally,an example shows the validity of method in this paper.
Quiver mutation loops and partition q-series
Kato, Akishi
2014-01-01
A quiver mutation loop is a sequence of mutations and vertex relabelings, along which a quiver transforms back to the original form. For a given mutation loop, we introduce a quantity called a partition q-series. The partition q-series are invariant under pentagon moves. If the quivers are of Dynkin type or square products thereof, they reproduce so-called parafermionic or quasi-particle character formulas of certain modules associated with affine Lie algebras. They enjoy nice modular properties as expected from the conformal field theory point of view.
Which Spatial Partition Trees are Adaptive to Intrinsic Dimension?
Verma, Nakul; Dasgupta, Sanjoy
2012-01-01
Recent theory work has found that a special type of spatial partition tree - called a random projection tree - is adaptive to the intrinsic dimension of the data from which it is built. Here we examine this same question, with a combination of theory and experiments, for a broader class of trees that includes k-d trees, dyadic trees, and PCA trees. Our motivation is to get a feel for (i) the kind of intrinsic low dimensional structure that can be empirically verified, (ii) the extent to which a spatial partition can exploit such structure, and (iii) the implications for standard statistical tasks such as regression, vector quantization, and nearest neighbor search.
pTAR-Encoded Proteins in Plasmid Partitioning
Kalnin, Kirill; Stegalkina, Svetlana; Yarmolinsky, Michael
2000-01-01
Partition cassettes, essential for the segregational stability of low-copy-number bacterial plasmids, typically encode two autoregulated proteins and an adjacent cis-acting centromere analog to which one or perhaps both proteins bind. The diminutive partition region of pTAR of Agrobacterium spp. was reported to be exceptional, encoding only a single protein, ParA (D. R. Gallie and C. I. Kado, J. Mol. Biol. 193:465–478, 1987). However, resequencing of the region revealed two small downstream g...
Orientation and velocity dependence of the nonequilibrium partition coefficient
Beatty, K. M.; Jackson, K. A.
1995-01-01
Monte Carlo simulations based on a Spin-1 Ising Model for binary alloys have been used to investigate the non-equilibrium partition coefficient (k(sub neq)) as a function of solid-liquid interface velocity and orientation. In simulations of Si with a second component k(sub neq) is greater in the [111] direction than the [100] direction in agreement with experimental results reported by Azlz et al. The simulated partition coefficient scales with the square of the step velocity divided by the diffusion coefficient of the secondary component in the liquid.
Estimation of octanol/water partition coefficients using LSER parameters
Luehrs, Dean C.; Hickey, James P.; Godbole, Kalpana A.; Rogers, Tony N.
1998-01-01
The logarithms of octanol/water partition coefficients, logKow, were regressed against the linear solvation energy relationship (LSER) parameters for a training set of 981 diverse organic chemicals. The standard deviation for logKow was 0.49. The regression equation was then used to estimate logKow for a test of 146 chemicals which included pesticides and other diverse polyfunctional compounds. Thus the octanol/water partition coefficient may be estimated by LSER parameters without elaborate software but only moderate accuracy should be expected.
Partitioning of biocides between water and inorganic phases of render
Urbanczyk, Michal; Bollmann, Ulla E.; Bester, Kai
The use of biocides as additives for building materials has gained importance in recent years. These biocides are, e.g., applied to renders and paints to prevent them from microbial spoilage. However, these biocides can leach out into the environment. In order to better understand this leaching...... compared. The partitioning constants for calcium carbonate varied between 0.1 (isoproturon) and 1.1 (iodocarb) and 84.6 (dichlorooctylisothiazolinone), respectively. The results for barite, kaolinite and mica were in a similar range and usually the compounds with high partitioning constants for one mineral...
Partition function of massless scalar field in Schwarzschild background
Sanyal, Abhik Kumar
2014-01-01
Using thermal value of zeta function instead of zero temperature, the partition function of quantized fields in arbitrary stationary backgrounds was found to be independent of undetermined regularization constant in even-dimension and the long drawn problem associated with the trace anomaly effect had been removed. Here, we explicitly calculate the expression for the coincidence limit so that the technique may be applied in some specific problems. A particular problem dealt with here is to calculate the partition function of massless scalar field in Schwarzschild background.
One-loop Partition Functions of 3D Gravity
Giombi, Simone; Yin, Xi
2008-01-01
We consider the one-loop partition function of free quantum field theory in locally Anti-de Sitter space-times. In three dimensions, the one loop determinants for scalar, gauge and graviton excitations are computed explicitly using heat kernel techniques. We obtain precisely the result anticipated by Brown and Henneaux: the partition function includes a sum over "boundary excitations" of AdS3, which are the Virasoro descendants of empty Anti-de Sitter space. This result also allows us to compute the one-loop corrections to the Euclidean action of the BTZ black hole as well its higher genus generalizations.
GALERKIN MESHLESS METHODS BASED ON PARTITION OF UNITY QUADRATURE
ZENG Qing-hong; LU De-tang
2005-01-01
Numerical quadrature is an important ingredient of Galerkin meshless methods. A new numerical quadrature technique, partition of unity quadrature (PUQ),for Galerkin meshless methods was presented. The technique is based on finite covering and partition of unity. There is no need to decompose the physical domain into small cell. It possesses remarkable integration accuracy. Using Element-free Galerkin methods as example, Galerkin meshless methods based on PUQ were studied in detail. Meshing is always not required in the procedure of constitution of approximate function or numerical quadrature, so Galerkin meshless methods based on PUQ are "truly"meshless methods.
Life prediction of thermal-mechanical fatigue using strainrange partitioning
Halford, G. R.; Manson, S. S.
1975-01-01
This paper describes the applicability of the method of Strainrange Partitioning to the life prediction of thermal-mechanical strain-cycling fatigue. An in-phase test on 316 stainless steel is analyzed as an illustrative example. The observed life is in excellent agreement with the life predicted by the method using the recently proposed Step-Stress Method of experimental partitioning, the Interaction Damage Rule, and the life relationships determined at an isothermal temperature of 705 C. Implications of the present study are discussed relative to the general thermal fatigue problem.
Popovas, Andrius
2016-01-01
Aims. In this work we rigorously show the shortcomings of various simplifications that are used to calculate the total internal partition function. These shortcomings can lead to errors of up to 40 percent or more in the estimated partition function. These errors carry on to calculations of thermodynamic quantities. Therefore a more complicated approach has to be taken. Methods. Seven possible simplifications of various complexity are described, together with advantages and disadvantages of direct summation of experimental values. These were compared to what we consider the most accurate and most complete treatment (case 8). Dunham coefficients were determined from experimental and theoretical energy levels of a number of electronically excited states of H$_2$ . Both equilibrium and normal hydrogen was taken into consideration. Results. Various shortcomings in existing calculations are demonstrated, and the reasons for them are explained. New partition functions for equilibrium, normal, and ortho and para hyd...
Prediction of Partition Coefficients of Organic Compounds for SPME/PDMS
Liao Hsuan-Yu
2016-01-01
Full Text Available The partition coefficients of 51 organic compounds between SPME/PDMS and gas were compiled from the literature sources in this study. The effect of physicochemical properties and descriptors on the partitioning process of partition coefficients was explicated by the correlation analysis. The PDMS-gas partition coefficients were well correlated to the molecular weight of organic compounds (r = 0.832, p < 0.05. An empirical model, consisting of the molecular weight and the polarizability, was developed to appropriately predict the partition coefficients of organic compounds. The empirical model for estimating the PDMS-gas partition coefficient will contribute to the practical applications of the SPME technique.
任刚; 罗仉平; 李文艳; 朱根华; 邵峰; 黄慧莲; 刘荣华
2013-01-01
Objective:To study the phenylpropanoids chemical constituents from the root of Dendropanax chevalieri,and evaluate the biological activity of the nine phenylpropanoids including the five phenylpropanoids isolated previously,and to provide preliminary pharmacological basis for the clinical application of the root of D.chevalieri in medicine of She nationality.Method:The constituents were isolated from n-butanol extract of D.chevalieri 95％ ethanol extract by all kinds of column chromatography.Their structures were elucidated by analysis of physical chemical properties and spectral data.By using phorbol myristate acetate (PMA) as the stimulant,luminol-dependent chemiluminescence was used to compare the effects of the nine phenylpropanoids compounds on the respiratory burst of rat neutrophils.Result:Four phenylpropanoid compounds,sinapaldehye glucoside (1),syrigin (2),coniferaldehyde 4-O-β-D-glucopyranoside (3) and icariside E5 (4),were isolated and identified from n-butanol extract.As results of pharmacological studies,six phenylpropanoid compounds revealed different inhibitory activity on the respiratory burst of rat neutrophils.Their activity were ranked in the decreasing order of scopoletin ＞ (+)-pinoresinol ＞ (+)-syringaresinol coniferaldehyde ＞ β-hydroxypropiovanillon ＞ VC ＞ icariside E5,while sinapaldehye glucoside,syrigin and coniferaldehyde 4-O-β-D-glucopyranoside had no inhibitory activity.Conclusion:Compound 3 is isolated from this genus for the first time.Phenylpropanoid compounds isolated from the root of D.chevalieri has a strong anti-PMN respiratory burst activity and hydroxyl group might be a pharmacophore.This is the fist report of the pharmacological evidence for the clinical application of the root of D.chevalieri in medicine of She nationality.%目的:继续对半边风的化学成分进行研究,并对包括前期研究的9个苯丙素类化合物进行生物活性评价,为半边风在畲族医药中的临床应用提供初步的
Chains, antichains, and complements in infinite partition lattices
Avery, James Emil; Moyen, Jean-Yves; Simonsen, Jakob Grue
2017-01-01
We consider the partition lattice $\\Pi_\\kappa$ on any set of transfinite cardinality $\\kappa$, and properties of $\\Pi_\\kappa$ whose analogues do not hold for finite cardinalities. Assuming the Axiom of Choice we prove: (I) the cardinality of any maximal well-ordered chain is between the cofinality...
Efficient Partitioning of Large Databases without Query Statistics
Shahidul Islam KHAN
2016-11-01
Full Text Available An efficient way of improving the performance of a database management system is distributed processing. Distribution of data involves fragmentation or partitioning, replication, and allocation process. Previous research works provided partitioning based on empirical data about the type and frequency of the queries. These solutions are not suitable at the initial stage of a distributed database as query statistics are not available then. In this paper, I have presented a fragmentation technique, Matrix based Fragmentation (MMF, which can be applied at the initial stage as well as at later stages of distributed databases. Instead of using empirical data, I have developed a matrix, Modified Create, Read, Update and Delete (MCRUD, to partition a large database properly. Allocation of fragments is done simultaneously in my proposed technique. So using MMF, no additional complexity is added for allocating the fragments to the sites of a distributed database as fragmentation is synchronized with allocation. The performance of a DDBMS can be improved significantly by avoiding frequent remote access and high data transfer among the sites. Results show that proposed technique can solve the initial partitioning problem of large distributed databases.
Partitioning Behavior of Petrodiesel/Biodiesel Blends in Water
The partitioning behavior of six petrodiesel/soybean-biodiesel blends (B0, B20, B40, B60, B80, and B100, where B100 is 100% unblended biodiesel) in water was investigated at various oil loads by the 10-fold dilution method. Five fatty acid methyl esters (FAMEs), C10 - C20 n
Shard Ranking and Cutoff Estimation for Topically Partitioned Collections
Kulkarni, Anagha; Tigelaar, Almer S.; Hiemstra, Djoerd; Callan, Jamie
2012-01-01
Large document collections can be partitioned into topical shards to facilitate distributed search. In a low-resource search environment only a few of the shards can be searched in parallel. Such a search environment faces two intertwined challenges. First, determining which shards to consult for a
SVOC partitioning between the gas phase and settled dust indoors
Weschler, Charles J.; Nazaroff, W. W.
2010-01-01
Semivolatile organic compounds (SVOCs) are a major class of indoor pollutants. Understanding SVOC partitioning between the gas phase and settled dust is important for characterizing the fate of these species indoors and the pathways by which humans are exposed to them. Such knowledge also helps...
SOME EXTENDED KNAPSACK PROBLEMS INVOLVING JOB PARTITION BETWEEN TWO PARTIES
无
2007-01-01
Some novel applications and pragmatic variations of knapsack problem (KP) are presented and constructed, which are formulated and developed from a model initiated in this paper on profit allocation from partition of jobs in terms of two-person discrete cooperation game.
Partition-induced connections and operators for pattern analysis
Ouzounis, Georgios K.; Wilkinson, Michael H.F.
2010-01-01
In this paper we present a generalization on the notion of image connectivity similar to that modeled by second-generation connections. The connected operators based on this new type of connection make use of image partitions aided by mask images to extract path-wise connected regions that were prev
A Lagrangean Relaxtion Based Algorithm for Solving Set Partitioning Problems
van Krieken, M.G.C.; Fleuren, H.A.; Peeters, M.J.P.
2004-01-01
In this paper we discuss a solver that is developed to solve set partitioning problems.The methods used include problem reduction techniques, lagrangean relaxation and primal and dual heuristics.The optimal solution is found using a branch and bound approach.In this paper we discuss these
Modelling fruit set, fruit growth and dry matter partitioning
Marcelis, L.F.M.; Heuvelink, E.
1999-01-01
This paper discusses how fruit set, fruit growth and dry matter partitioning can be simulated by models where sink strength (assimilate demand) and source strength (assimilate supply) are the key variables. Although examples are derived from experiments on fruit vegetables such as tomato, sweet pepp
Partitions of nonzero elements of a finite field into pairs
Karasev, R N
2010-01-01
In this paper we prove two theorems. Informally, they claim that the nonzero elements of a finite field with odd characteristic can be partitioned into pairs with prescribed difference (maybe, with some alternatives) in each pair. We also consider some generalizations of these results to packing translates in a finite or infinite field.
Lipid partitioning at the nuclear envelope controls membrane biogenesis
Barbosa, Antonio Daniel; Sembongi, Hiroshi; Su, Wen-Min; Abreu, Susana; Reggiori, Fulvio; Carman, George M.; Siniossoglou, Symeon
2015-01-01
Partitioning of lipid precursors between membranes and storage is crucial for cell growth, and its disruption underlies pathologies such as cancer, obesity, and type 2 diabetes. However, the mechanisms and signals that regulate this process are largely unknown. In yeast, lipid precursors are mainly
Algorithmic and structural aspects of graph partitioning and related problems
Zhang, Xiaoyan
2014-01-01
Graph partitioning problems enjoy many practical applications as well as algorithmic and theoretical challenges. This motivates the topics of this thesis that is composed of two parts. The first part of the thesis consists of Chapters 2 to 4. In this part, we present results on the complexity and in
strain partitioning and dimensional preferred orientation in a syn ...
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a non-hydrostatic stress state, dimensional preferred orientation and strain are partitioned ... attention paid to the relationship existing among the various lithology ... Macroscopic analysis: The most dominant intrusive rock type in the western ... Mesoscopic observations: At the level of the exposure and hand specimen, the ...
Virus spread in complete bi-partite graphs
Omic, J.S.; Kooij, R.E.; Mieghem, P. van
2007-01-01
In this paper we study the spread of viruses on the complete bi-partite graph Km,n. Using mean field theory we first show that the epidemic threshold for this type of graph satifies Tc = 1/√MN, hence, confirming previous results from literature. Next, we find an expression for the average number of
Estimation of high temperature metal-silicate partition coefficients
Jones, John H.; Capobianco, Christopher J.; Drake, Michael J.
1992-01-01
It has been known for some time that abundances of siderophile elements in the upper mantle of the Earth are far in excess of those expected from equilibrium between metal and silicate at low pressures and temperatures. Murthy (1991) has re-examined this excess of siderophile element problem by estimating liquid metal/liquid silicate partition coefficients reduces from their measured values at a lower temperature, implying that siderophile elements become much less siderophilic at high temperatures. Murthy then draws the important conclusion that metal/silicate equilibrium at high temperatures can account for the abundances of siderophile elements in the Earth's mantle. Of course, his conclusion is critically dependent on the small values of the partition coefficients he calculates. Because the numerical values of most experimentally-determined partition coefficients increase with increasing temperature at both constant oxygen fugacity and at constant redox buffer, we think it is important to try an alternative extrapolation for comparison. We have computed high temperature metal/silicate partition coefficients under a different set of assumptions and show that such long temperature extrapolations yield values which are critically dependent upon the presumed chemical behavior of the siderophile elements in the system.
The Logic of Organizational Markets: Thinking Through Resource Partitioning Theory
Vermeulen, Ivar; Bruggeman, Jeroen
2001-01-01
Resource partitioning theory claims that “Increasing concentration enhances the life chances of specialist organizations.” We systematically think through this theory, specify implicit background assumptions, sharpen concepts, and rigorously check the theory’s logic. As a result, we increase the the
Partitioning Behavior of Petrodiesel/Biodiesel Blends in Water
The partitioning behavior of six petrodiesel/soybean-biodiesel blends (B0, B20, B40, B60, B80, and B100, where B100 is 100% unblended biodiesel) in water was investigated at various oil loads by the 10-fold dilution method. Five fatty acid methyl esters (FAMEs), C10 - C20 n
Partitioning changes in photosynthetic rate into contributions from different variables.
Buckley, Thomas N; Diaz-Espejo, Antonio
2015-06-01
Changes in net CO2 assimilation rate (A) are often partitioned into contributions from changes in different variables using an approach that is based on an expression from calculus: namely the definition of the exact differential of A, which states that an infinitesimal change in A (dA) is equal to the sum of infinitesimal changes in each of the underlying variables, each multiplied by the partial derivative of A with respect to the variable. Finite changes in A can thus be partitioned by integrating this sum across a finite interval. The most widely used method of estimating that integral is a coarse discrete approximation that uses partial derivatives of the natural logarithm of A rather than A itself. This yields biased and ambiguous estimates of partitioned changes in A. We present an alternative partitioning approach based on direct numerical integration of dA. The new approach does not require any partial derivatives to be computed, and it can be applied under any conditions to estimate the contributions from changes in any photosynthetic variable. We demonstrate this approach using field measurements of both seasonal and diurnal changes in assimilation rate, and we provide a spreadsheet implementing the new approach.
Exact Cover Problem in Milton Babbitt's All-partition Array
2015-01-01
One aspect of analyzing Milton Babbitt’s (1916–2011) all- partition arrays requires finding a sequence of distinct, non-overlapping aggregate regions that completely and exactly covers an irregular matrix of pitch class integers. This is an example of the so-called exact cover problem. Given a set...
Partitioning heritability by functional category using GWAS summary statistics
Finucane, Hilary K.; Bulik-Sullivan, Brendan; Gusev, Alexander
2015-01-01
in genome-wide association studies (GWAS) of 17 complex diseases and traits with an average sample size of 73,599. To enable this analysis, we introduce a new method, stratified LD score regression, for partitioning heritability from GWAS summary statistics while accounting for linked markers. This new...
Exponential B-splines and the partition of unity property
Christensen, Ole; Massopust, Peter
2012-01-01
We provide an explicit formula for a large class of exponential B-splines. Also, we characterize the cases where the integer-translates of an exponential B-spline form a partition of unity up to a multiplicative constant. As an application of this result we construct explicitly given pairs of dual...
Island partition of the distribution system with distributed generation
无
2010-01-01
In this paper, a novel optimum island partition model based on Tree Knapsack Problem (TKP) is presented for the distribution system integrated with distributed generation (DG), and a Depth-first Dynamic Programming Algorithm (DPA) is used to solve this model. With the considerations of the load priority, controlled/uncontrolled loads, and the constraints of power balance, voltage and equipment capacity, the model can meet the practical engineering requirements very well. The island partition problem of the distribution system integrated with multiple DGs is first decomposed into multiple TKPs, each of which is solved by DPA respectively. Then, the initial optimum island partition scheme is gained through an island combination procedure, and the final island partition scheme is obtained after feasibility checking and adjustment. Since the algorithm proposed owns the advantages of strong theoretical foundation and low computational complexity, it can find the approximate optimal solution within a limited time. The results of examples demonstrate the validity of the new model and algorithm.
Partitioning of Sulfur and Platinum at Core Formation Conditions.
Suer, T. A.; Siebert, J.; Fiquet, G.; Remusat, L.
2015-12-01
Measuring the partitioning behavior of highly siderophile elements (HSE) at high pressures and temperatures is important for understanding the mantle's elemental reservoir and the core mantle differentiation process. Low solubility of HSEs in silicate melts and the small size of samples obtained from diamond anvil cell (DAC) experiments have prevented the experimental study of the partitioning of these elements at realistic deep magma ocean conditions. In this study, we present results for metal-silicate partitioning experiments of sulfur and platinum conducted at pressures between 45 and 80 GPa and at temperatures from 3500 to 4200 K. With the nanoSIMS as our main tool for measuring trace element concentrations, we have developed a protocol for studying the partitioning behavior of these elements from samples that underwent equilibration at high pressure and temperatures in a Laser-Heated DAC. The nanoSIMS has the spatial resolution and the required sensitivity to measure the low concentration of some HSEs in the quenched silicate glass. The results of this study will help to refine current core-mantle differentiation models. Furthermore they add constraints to the contribution of the late veneer to the mantle's elemental abundances.
Partition function for the eigenvalues of the Wilson line
Gocksch, A
1993-01-01
In a gauge theory at nonzero temperature the eigenvalues of the Wilson line form a set of gauge invariant observables. By constructing the corresponding partition function for the phases of these eigenvalues, we prove that the trivial vacuum, where the phases vanish, is a minimum of the free energy.
Virus spread in complete bi-partite graphs
Omic, J.S.; Kooij, R.E.; Mieghem, P. van
2007-01-01
In this paper we study the spread of viruses on the complete bi-partite graph Km,n. Using mean field theory we first show that the epidemic threshold for this type of graph satifies Tc = 1/√MN, hence, confirming previous results from literature. Next, we find an expression for the average number of
Effective classification of 3D image data using partitioning methods
Megalooikonomou, Vasileios; Pokrajac, Dragoljub; Lazarevic, Aleksandar; Obradovic, Zoran
2002-03-01
We propose partitioning-based methods to facilitate the classification of 3-D binary image data sets of regions of interest (ROIs) with highly non-uniform distributions. The first method is based on recursive dynamic partitioning of a 3-D volume into a number of 3-D hyper-rectangles. For each hyper-rectangle, we consider, as a potential attribute, the number of voxels (volume elements) that belong to ROIs. A hyper-rectangle is partitioned only if the corresponding attribute does not have high discriminative power, determined by statistical tests, but it is still sufficiently large for further splitting. The final discriminative hyper-rectangles form new attributes that are further employed in neural network classification models. The second method is based on maximum likelihood employing non-spatial (k-means) and spatial DBSCAN clustering algorithms to estimate the parameters of the underlying distributions. The proposed methods were experimentally evaluated on mixtures of Gaussian distributions, on realistic lesion-deficit data generated by a simulator conforming to a clinical study, and on synthetic fractal data. Both proposed methods have provided good classification on Gaussian mixtures and on realistic data. However, the experimental results on fractal data indicated that the clustering-based methods were only slightly better than random guess, while the recursive partitioning provided significantly better classification accuracy.
n-Alcohol/Water Partition Coefficients for Decachlorobiphenyl (PCB 209)
Measurements of n-octanol/water partition coefficients (Kow) for highly hydrophobic chemicals are extremely difficult and are rarely made, in part due to the large volumes of water typically needed to quantify these compounds in the aqueous phase. An extrapolation approach using ...
n-Alcohol/Water Partition Coefficients for Decachlorobiphenyl (PCB 209)
Measurements of n-octanol/water partition coefficients (Kow) for highly hydrophobic chemicals are extremely difficult and are rarely made, in part due to the large volumes of water typically needed to quantify these compounds in the aqueous phase. An extrapolation approach using ...
Methodology for optimally sized centrifugal partition chromatography columns.
Chollet, Sébastien; Marchal, Luc; Jérémy Meucci; Renault, Jean-Hugues; Legrand, Jack; Foucault, Alain
2015-04-01
Centrifugal Partition Chromatography (CPC) is a separation process based on the partitioning of solutes between two partially miscible liquid phases. There is no solid support for the stationary phase. The centrifugal acceleration is responsible for both stationary phase retention and mobile phase dispersion. CPC is thus a process based on liquid-liquid mass transfer. The separation efficiency is mainly influenced by the hydrodynamics of the phases in each cell of the column. Thanks to a visualization system, called "Visual CPC", it was observed that the mobile phase can flow through the stationary phase as a sheet, or a spray. Hydrodynamics, which directly governs the instrument efficiency, is directly affected during scale changes, and non-linear phenomena prevent the successful achievement of mastered geometrical scale changes. In this work, a methodology for CPC column sizing is proposed, based on the characterization of the efficiency of advanced cell shapes, taking into account the hydrodynamics. Knowledge about relationship between stationary phase volume, cell efficiency and separation resolution in CPC allowed calculating the optimum cell number for laboratory and industrial scale CPC application. The methodology is highlighted with results on five different geometries from 25 to 5000 mL, for two applications: the separation of alkylbenzene by partitioning with heptane/methanol/water biphasic system; and the separation of peptides by partitioning with n-butanol/acetic acid/water (4/1/5) biphasic system. With this approach, it is possible to predict the optimal CPC column length leading to highest productivity.
Unsupervised segmentation of MRI knees using image partition forests
Marčan, Marija; Voiculescu, Irina
2016-03-01
Nowadays many people are affected by arthritis, a condition of the joints with limited prevention measures, but with various options of treatment the most radical of which is surgical. In order for surgery to be successful, it can make use of careful analysis of patient-based models generated from medical images, usually by manual segmentation. In this work we show how to automate the segmentation of a crucial and complex joint -- the knee. To achieve this goal we rely on our novel way of representing a 3D voxel volume as a hierarchical structure of partitions which we have named Image Partition Forest (IPF). The IPF contains several partition layers of increasing coarseness, with partitions nested across layers in the form of adjacency graphs. On the basis of a set of properties (size, mean intensity, coordinates) of each node in the IPF we classify nodes into different features. Values indicating whether or not any particular node belongs to the femur or tibia are assigned through node filtering and node-based region growing. So far we have evaluated our method on 15 MRI knee images. Our unsupervised segmentation compared against a hand-segmented gold standard has achieved an average Dice similarity coefficient of 0.95 for femur and 0.93 for tibia, and an average symmetric surface distance of 0.98 mm for femur and 0.73 mm for tibia. The paper also discusses ways to introduce stricter morphological and spatial conditioning in the bone labelling process.
A geometric toolbox for tetrahedral finite element partitions
Brandts, J.; Korotov, S.; Křížek, M.; Axelsson, O.; Karátson, J.
2011-01-01
In this work we present a survey of some geometric results on tetrahedral partitions and their refinements in a unified manner. They can be used for mesh generation and adaptivity in practical calculations by the finite element method (FEM), and also in theoretical finite element (FE) analysis. Spec
On optimally partitioning a text to improve its compression
Ferragina, Paolo; Venturini, Rossano
2009-01-01
In this paper we investigate the problem of partitioning an input string T in such a way that compressing individually its parts via a base-compressor C gets a compressed output that is shorter than applying C over the entire T at once. This problem was introduced in the context of table compression, and then further elaborated and extended to strings and trees. Unfortunately, the literature offers poor solutions: namely, we know either a cubic-time algorithm for computing the optimal partition based on dynamic programming, or few heuristics that do not guarantee any bounds on the efficacy of their computed partition, or algorithms that are efficient but work in some specific scenarios (such as the Burrows-Wheeler Transform) and achieve compression performance that might be worse than the optimal-partitioning by a $\\Omega(\\sqrt{\\log n})$ factor. Therefore, computing efficiently the optimal solution is still open. In this paper we provide the first algorithm which is guaranteed to compute in $O(n \\log_{1+\\eps}...
Variance Components for NLS: Partitioning the Design Effect.
Folsom, Ralph E., Jr.
This memorandum demonstrates a variance components methodology for partitioning the overall design effect (D) for a ratio mean into stratification (S), unequal weighting (W), and clustering (C) effects, so that D = WSC. In section 2, a sample selection scheme modeled after the National Longitudinal Study of the High School Class of 1972 (NKS)…
Cost efficient CFD simulations: Proper selection of domain partitioning strategies
Haddadi, Bahram; Jordan, Christian; Harasek, Michael
2017-10-01
Computational Fluid Dynamics (CFD) is one of the most powerful simulation methods, which is used for temporally and spatially resolved solutions of fluid flow, heat transfer, mass transfer, etc. One of the challenges of Computational Fluid Dynamics is the extreme hardware demand. Nowadays super-computers (e.g. High Performance Computing, HPC) featuring multiple CPU cores are applied for solving-the simulation domain is split into partitions for each core. Some of the different methods for partitioning are investigated in this paper. As a practical example, a new open source based solver was utilized for simulating packed bed adsorption, a common separation method within the field of thermal process engineering. Adsorption can for example be applied for removal of trace gases from a gas stream or pure gases production like Hydrogen. For comparing the performance of the partitioning methods, a 60 million cell mesh for a packed bed of spherical adsorbents was created; one second of the adsorption process was simulated. Different partitioning methods available in OpenFOAM® (Scotch, Simple, and Hierarchical) have been used with different numbers of sub-domains. The effect of the different methods and number of processor cores on the simulation speedup and also energy consumption were investigated for two different hardware infrastructures (Vienna Scientific Clusters VSC 2 and VSC 3). As a general recommendation an optimum number of cells per processor core was calculated. Optimized simulation speed, lower energy consumption and consequently the cost effects are reported here.
Raster Data Partitioning for Supporting Distributed GIS Processing
Nguyen Thai, B.; Olasz, A.
2015-08-01
In the geospatial sector big data concept also has already impact. Several studies facing originally computer science techniques applied in GIS processing of huge amount of geospatial data. In other research studies geospatial data is considered as it were always been big data (Lee and Kang, 2015). Nevertheless, we can prove data acquisition methods have been improved substantially not only the amount, but the resolution of raw data in spectral, spatial and temporal aspects as well. A significant portion of big data is geospatial data, and the size of such data is growing rapidly at least by 20% every year (Dasgupta, 2013). The produced increasing volume of raw data, in different format, representation and purpose the wealth of information derived from this data sets represents only valuable results. However, the computing capability and processing speed rather tackle with limitations, even if semi-automatic or automatic procedures are aimed on complex geospatial data (Kristóf et al., 2014). In late times, distributed computing has reached many interdisciplinary areas of computer science inclusive of remote sensing and geographic information processing approaches. Cloud computing even more requires appropriate processing algorithms to be distributed and handle geospatial big data. Map-Reduce programming model and distributed file systems have proven their capabilities to process non GIS big data. But sometimes it's inconvenient or inefficient to rewrite existing algorithms to Map-Reduce programming model, also GIS data can not be partitioned as text-based data by line or by bytes. Hence, we would like to find an alternative solution for data partitioning, data distribution and execution of existing algorithms without rewriting or with only minor modifications. This paper focuses on technical overview of currently available distributed computing environments, as well as GIS data (raster data) partitioning, distribution and distributed processing of GIS algorithms
Gene ordering in partitive clustering using microarray expressions.
Ray, Shubhra Sankar; Bandyopadhyay, Sanghamitra; Pal, Sankar K
2007-08-01
A central step in the analysis of gene expression data is the identification of groups of genes that exhibit similar expression patterns. Clustering and ordering the genes using gene expression data into homogeneous groups was shown to be useful in functional annotation, tissue classification, regulatory motif identification, and other applications. Although there is a rich literature on gene ordering in hierarchical clustering framework for gene expression analysis, there is no work addressing and evaluating the importance of gene ordering in partitive clustering framework, to the best knowledge of the authors. Outside the framework of hierarchical clustering, different gene ordering algorithms are applied on the whole data set, and the domain of partitive clustering is still unexplored with gene ordering approaches. A new hybrid method is proposed for ordering genes in each of the clusters obtained from partitive clustering solution, using microarray gene expressions.Two existing algorithms for optimally ordering cities in travelling salesman problem (TSP), namely, FRAG_GALK and Concorde, are hybridized individually with self organizing MAP to show the importance of gene ordering in partitive clustering framework. We validated our hybrid approach using yeast and fibroblast data and showed that our approach improves the result quality of partitive clustering solution, by identifying subclusters within big clusters, grouping functionally correlated genes within clusters, minimization of summation of gene expression distances, and the maximization of biological gene ordering using MIPS categorization. Moreover, the new hybrid approach, finds comparable or sometimes superior biological gene order in less computation time than those obtained by optimal leaf ordering in hierarchical clustering solution.
Gene ordering in partitive clustering using microarray expressions
Shubhra Sankar Ray; Sanghamitra Bandyopadhyay; Sankar K Pal
2007-08-01
A central step in the analysis of gene expression data is the identification of groups of genes that exhibit similar expression patterns. Clustering and ordering the genes using gene expression data into homogeneous groups was shown to be useful in functional annotation, tissue classification, regulatory motif identification, and other applications. Although there is a rich literature on gene ordering in hierarchical clustering framework for gene expression analysis, there is no work addressing and evaluating the importance of gene ordering in partitive clustering framework, to the best knowledge of the authors. Outside the framework of hierarchical clustering, different gene ordering algorithms are applied on the whole data set, and the domain of partitive clustering is still unexplored with gene ordering approaches. A new hybrid method is proposed for ordering genes in each of the clusters obtained from partitive clustering solution, using microarray gene expressions. Two existing algorithms for optimally ordering cities in travelling salesman problem (TSP), namely, FRAG_GALK and Concorde, are hybridized individually with self organizing MAP to show the importance of gene ordering in partitive clustering framework. We validated our hybrid approach using yeast and fibroblast data and showed that our approach improves the result quality of partitive clustering solution, by identifying subclusters within big clusters, grouping functionally correlated genes within clusters, minimization of summation of gene expression distances, and the maximization of biological gene ordering using MIPS categorization. Moreover, the new hybrid approach, finds comparable or sometimes superior biological gene order in less computation time than those obtained by optimal leaf ordering in hierarchical clustering solution.
LINGNeng-xiang; DUXue-qiao
2005-01-01
In this paper, we study the strong consistency for partitioning estimation of regression function under samples that axe φ-mixing sequences with identically distribution.Key words: nonparametric regression function; partitioning estimation; strong convergence;φ-mixing sequences.
Evaluation of models for metal partitioning and speciation in soils and their use in risk assessment
Groenenberg, J.E.
2011-01-01
In this thesis models were developed and evaluated which describe metal partitioning and speciation in soils. Both partition-relations and multisurface models were developed and evaluated on their performance for a large set of elements
Sharing-Aware Horizontal Partitioning for Exploiting Correlations during Query Processing
Tzoumas, Kostas; Deshpande, Amol; Jensen, Christian Søndergaard
2010-01-01
Optimization of join queries based on average selectivities is suboptimal in highly correlated databases. In such databases, relations are naturally divided into partitions, each partition having substantially different statistical characteristics. It is very compelling to discover such data...
Sharing-aware horizontal partitioning for exploiting correlations during query processing
Tzoumas, Kostas; Deshpande, Amol; Jensen, Christian S.
2010-01-01
Optimization of join queries based on average selectivities is suboptimal in highly correlated databases. In such databases, relations are naturally divided into partitions, each partition having substantially different statistical characteristics. It is very compelling to discover such data...
Optimization of Time-Partitions for Mixed-Criticality Real-Time Distributed Embedded Systems
Tamas-Selicean, Domitian; Pop, Paul
2011-01-01
In this paper we are interested in mixed-criticality embedded real-time applications mapped on distributed heterogeneous architectures. The architecture provides both spatial and temporal partitioning, thus enforcing enough separation for the critical applications. With temporal partitioning, each...
This equilibrium partitioning sediment benchmark (ESB) document describes procedures to derive concentrations of the insecticide dieldrin in sediment which are protective of the presence of benthic organisms. The equilibrium partitioning (EqP) approach was chosen because it acco...
Zhang, Keda; Fahr, Alfred; Abraham, Michael H; Acree, William E; Tobin, Desmond J; Liu, Xiangli
2015-10-15
Lipid membrane-water partitions (e.g., immobilized artificial membrane systems where the lipid membrane is a neutral phospholipid monolayer bound to gel beads) were compared to various organic solvent-water partitions using linear free energy relationships. To this end, we also measured the retention factors of 36 compounds (including neutral and ionic species) from water to liposomes made up of 3-sn-phosphatidylcholine and 3-sn-phosphatidyl-l-serine (80:20, mol/mol), employing liposome electrokinetic chromatography in this work. The results show that lipid membranes exhibit a considerably different chemical environment from those of organic solvents. For both neutral species and ionic species, partitions into the more polar hydroxylic solvents are chemically closer to partition into the lipid membrane as compared to partitions into the less polar hydroxylic solvents and into aprotic solvents. This means that solutes partition into the polar parts of lipid membranes, regardless of whether they are charged or not. In addition, cerasome (i.e., liposome composed mainly of stratum corneum lipids) was compared with regular phospholipid liposomes as a possible model for human stratum corneum in partitions. It was found that the cerasome-water partition exhibits a better chemical similarity to skin permeation. This is probably due to the unique structures of ceramides that occur in cerasome and in the stratum corneum lipid domain. We further show that membranes in membrane-water partitions exhibit very different properties.
Howell, Nathan L; Rifai, Hanadi S
2016-04-01
A 9-year water dataset from the Houston Ship Channel (HSC) was analyzed to understand partitioning in polychlorinated biphenyls (PCBs) and polychlorinated dibenzo-p-dioxins/polychlorinated dibenzofurans (PCDD/Fs). Total PCBs had more mass as dissolved (74%) whereas total PCDD/Fs did not (11%). Generally, the limited number of PCDD/Fs (only 2378 substituted) explained these differences though differences in chemical behavior beyond log K ow also likely influence partitioning. The particular fractionation seen in the HSC also seemed related to a wide variation in particulate organic carbon (POC)/dissolved organic carbon (DOC) ratio (0.42-180%). Published and unaltered linear free energy and linear solvation energy relationships for DOC, POC, and particulate black carbon (BC) resulted in predictions that were at best 27% (PCB) and 25% root-mean-square error (RMSE) (PCDD/F) partition fraction compared to observed (using estimated BC/POC fractions of 10 and 25%, respectively). These results show, at least in light of the uncertainties in this data (e.g., precise fraction of BC), that a 25% accuracy in model prediction of operationally dissolved or suspended fraction for any one PCB or PCDD/F congener is the best prediction that may be expected. It is therefore recommended that site-specific data be used to calibrate most any water column-partitioning model if it is to be expected to describe what actually occurs in field conditions.
Radionuclide Partitioning in an Underground Nuclear Test Cavity
Rose, T P; Hu, Q; Zhao, P; Conrado, C L; Dickerson, R; Eaton, G F; Kersting, A B; Moran, J E; Nimz, G; Powell, B A; Ramon, E C; Ryerson, F J; Williams, R W; Wooddy, P T; Zavarin, M
2009-01-09
In 2004, a borehole was drilled into the 1983 Chancellor underground nuclear test cavity to investigate the distribution of radionuclides within the cavity. Sidewall core samples were collected from a range of depths within the re-entry hole and two sidetrack holes. Upon completion of drilling, casing was installed and a submersible pump was used to collect groundwater samples. Test debris and groundwater samples were analyzed for a variety of radionuclides including the fission products {sup 99}Tc, {sup 125}Sb, {sup 129}I, {sup 137}Cs, and {sup 155}Eu, the activation products {sup 60}Co, {sup 152}Eu, and {sup 154}Eu, and the actinides U, Pu, and Am. In addition, the physical and bulk chemical properties of the test debris were characterized using Scanning Electron Microscopy (SEM) and Electron Microprobe measurements. Analytical results were used to evaluate the partitioning of radionuclides between the melt glass, rubble, and groundwater phases in the Chancellor test cavity. Three comparative approaches were used to calculate partitioning values, though each method could not be applied to every nuclide. These approaches are based on: (1) the average Area 19 inventory from Bowen et al. (2001); (2) melt glass, rubble, and groundwater mass estimates from Zhao et al. (2008); and (3) fission product mass yield data from England and Rider (1994). The U and Pu analyses of the test debris are classified and partitioning estimates for these elements were calculated directly from the classified Miller et al. (2002) inventory for the Chancellor test. The partitioning results from this study were compared to partitioning data that were previously published by the IAEA (1998). Predictions of radionuclide distributions from the two studies are in agreement for a majority of the nuclides under consideration. Substantial differences were noted in the partitioning values for {sup 99}Tc, {sup 125}Sb, {sup 129}I, and uranium. These differences are attributable to two factors
Integer Programming Formulation of the Problem of Generating Milton Babbitt's All-partition Arrays
Tanaka, Tsubasa; Bemman, Brian; Meredith, David
2016-01-01
Milton Babbitt (1916–2011) was a composer of twelve-tone serial music noted for creating the all-partition array. The problem of generating an all-partition array involves finding a rectangular array of pitch-class integers that can be partitioned into regions, each of which represents a distinct...
Sink strength as a determinant of dry matter partitioning in the whole plant
Marcelis, L.F.M.
1996-01-01
Dry matter partitioning is the end result of the flow of assimilates from source organs via a transport path to the sink organs. The dry matter partitioning among the sinks of a plant is primarily regulated by the sinks themselves. The effect of source strength on dry matter partitioning is often no
Efficient Partitioning of Algorithms for Long Convolutions and their Mapping onto Architectures
Bierens, L.; Deprettere, E.
1998-01-01
We present an efficient approach for the partitioning of algorithms implementing long convolutions. The dependence graph (DG) of a convolution algorithm is locally sequential globally parallel (LSGP) partitioned into smaller, less complex convolution algorithms. The LSGP partitioned DG is mapped ont
Partitions, Compartments and Portals: Cave Development in internally impounded karst masses.
Osborne R. Armstrong L.
2005-07-01
Full Text Available Dykes and other vertical bodies can act as aquicludes within bodies of karst rock. These partitions separate isolated bodies of solublerock called compartments. Speleogenetically each compartment will behave as a small impounded-karst until the partition becomesbreached. Breaches through partitions, portals, allow water, air and biota including humans to pass between sections of caves thatwere originally isolated.
Sound Diffraction Around Movable Partitions in Teaching Spaces. Education Building Report 1.
Choudhury, N. K. D.
This study concerns the diffraction of sound around flexible partitions used in teaching spaces. It includes a comprehensive study of the acoustical conditions in several school buildings in India, Malaysia, Singapore, and Sri Lanka. The noise reduction properties of some typical partitions the minimum height of the partition between two teaching…
Sink strength as a determinant of dry matter partitioning in the whole plant
Marcelis, L.F.M.
1996-01-01
Dry matter partitioning is the end result of the flow of assimilates from source organs via a transport path to the sink organs. The dry matter partitioning among the sinks of a plant is primarily regulated by the sinks themselves. The effect of source strength on dry matter partitioning is often no
Zeros of the Partition Function in the Randomized Riemann Gas
Dueñas, J G
2014-01-01
An arithmetic gas is a second quantized mechanical system where the partition function is a Dirichlet series of a given arithmetic function. One example of such system is known as the bosonic Riemann gas. We assume that the hamiltonian of the bosonic Riemann gas has a random variable with some probability distribution over an ensemble of hamiltonians. We discuss the singularity structure for the average free energy density of this arithmetic gas in the complex $\\beta$ plane. First, assuming the Riemann hypothesis, there is a clustering of singular points along the imaginary axis coming from the non-trivial zeros of the Riemann zeta function on the critical line. This singularity structure associated to the zeros of the partition functions of the ensemble in the complex $\\beta$ plane are the Fisher zeros. Second, there are also logarithmic singularities due to the poles of the Riemann zeta functions associated to the ensemble of hamiltonians. Finally we present the average energy density of the system.
A non-commuting twist in the partition function
Govindarajan, Suresh
2012-01-01
We compute a twisted index for an orbifold theory when the twist generating group does not commute with the orbifold group. The twisted index requires the theory to be defined on moduli spaces that are compatible with the twist. This is carried out for CHL models at special points in the moduli space where they admit dihedral symmetries. The commutator subgroup of the dihedral groups are cyclic groups that are used to construct the CHL orbifolds. The residual reflection symmetry is chosen to act as a `twist' on the partition function. The reflection symmetries do not commute with the orbifolding group and hence we refer to this as a non-commuting twist. We count the degeneracy of half-BPS states using the twisted partition function and find that the contribution comes mainly from the untwisted sector. We show that the generating function for these twisted BPS states are related to the Mathieu group M_{24}.
Generating All Partitions: A Comparison Of Two Encodings
Kelleher, Jerome
2009-01-01
Integer partitions may be encoded as either ascending or descending compositions for the purposes of systematic generation. Many algorithms exist to generate all descending compositions, yet none have previously been published to generate all ascending compositions. We develop three new algorithms to generate all ascending compositions and compare these with descending composition generators from the literature. We analyse the new algorithms and provide new and more precise analyses for the descending composition generators. In each case, the ascending composition generation algorithm is substantially more efficient than its descending composition counterpart. We develop a new formula for the partition function p(n) as part of our analysis of the lexicographic succession rule for ascending compositions.
An iterated tabu search approach for the clique partitioning problem.
Palubeckis, Gintaras; Ostreika, Armantas; Tomkevičius, Arūnas
2014-01-01
Given an edge-weighted undirected graph with weights specifying dissimilarities between pairs of objects, represented by the vertices of the graph, the clique partitioning problem (CPP) is to partition the vertex set of the graph into mutually disjoint subsets such that the sum of the edge weights over all cliques induced by the subsets is as small as possible. We develop an iterated tabu search (ITS) algorithm for solving this problem. The proposed algorithm incorporates tabu search, local search, and solution perturbation procedures. We report computational results on CPP instances of size up to 2000 vertices. Performance comparisons of ITS against state-of-the-art methods from the literature demonstrate the competitiveness of our approach.
$q$-Virasoro modular double and 3d partition functions
Nedelin, Anton; Zabzine, Maxim
2016-01-01
We study partition functions of 3d $\\mathcal{N}=2$ U(N) gauge theories on compact manifolds which are $S^1$ fibrations over $S^2$. We show that the partition functions are free field correlators of vertex operators and screening charges of the $q$-Virasoro modular double, which we define. The inclusion of supersymmetric Wilson loops in arbitrary representations allows us to show that the generating functions of Wilson loop vacuum expectation values satisfy two SL(2,$\\mathbb{Z}$)-related commuting sets of $q$-Virasoro constraints. We generalize our construction to 3d $\\mathcal{N}=2$ unitary quiver gauge theories and as an example we give the free boson realization of the ABJ(M) model.
Computing black hole partition functions from quasinormal modes
Arnold, Peter; Vaman, Diana
2016-01-01
We propose a method of computing one-loop determinants in black hole spacetimes (with emphasis on asymptotically anti-de Sitter black holes) that may be used for numerics when completely-analytic results are unattainable. The method utilizes the expression for one-loop determinants in terms of quasinormal frequencies determined by Denef, Hartnoll and Sachdev in [1]. A necessary ingredient is a refined regularization scheme to regulate the contributions of individual fixed-momentum sectors to the partition function. To this end, we formulate an effective two-dimensional problem in which a natural refinement of standard heat kernel techniques can be used to account for contributions to the partition function at fixed momentum. We test our method in a concrete case by reproducing the scalar one-loop determinant in the BTZ black hole background. We then discuss the application of such techniques to more complicated spacetimes.
Unified approach to partition functions of RNA secondary structures.
Bundschuh, Ralf
2014-11-01
RNA secondary structure formation is a field of considerable biological interest as well as a model system for understanding generic properties of heteropolymer folding. This system is particularly attractive because the partition function and thus all thermodynamic properties of RNA secondary structure ensembles can be calculated numerically in polynomial time for arbitrary sequences and homopolymer models admit analytical solutions. Such solutions for many different aspects of the combinatorics of RNA secondary structure formation share the property that the final solution depends on differences of statistical weights rather than on the weights alone. Here, we present a unified approach to a large class of problems in the field of RNA secondary structure formation. We prove a generic theorem for the calculation of RNA folding partition functions. Then, we show that this approach can be applied to the study of the molten-native transition, denaturation of RNA molecules, as well as to studies of the glass phase of random RNA sequences.
Development of long-lived radionuclide partitioning technology
Yoo, Jae Hyung; Lee, Eil Hee; Kim, Kwang Wook; Yang, Han Beom; Chung, Dong Yong; Lim, Jae Kwan; Shin, Young Jun; Kim, Heung Ho; Kown, Sun Gil; Kim, Young Hwan; Hwang, Doo Seung
1996-07-01
This study has been focused on the development of unit processes for partitioning in the 1st stage, and experimentally carried out to examine the separation characteristics and operation conditions on the following unit processes. (1) Removal of a small amount of uranium by extraction with TBP, (2) Removal of Zr and Mo and destruction of nitric acid by uranium by denitration with formic acid, (3) Co-precipitation of Am, Np and RE oxalic acid, (4) Dissolution and destruction of oxalate by hydrogen peroxide, (5) Co-extraction of Am, Np and RE by nitric acid, (8) Back-extraction of Np by oxalic acid, (9) Adsorption and elution of Cs and Sr by zeolite, and (10) Advanced separation of radionuclide by electrochemical REDOX method. The results obtained from each unit process will be use as the basic materials for the establishment of optimal partitioning and design of process equipment. (author). 46 refs., 54 tabs., 222 figs.
Three phase partitioning leads to subtle structural changes in proteins.
Rather, Gulam Mohmad; Gupta, Munishwar Nath
2013-09-01
Three phase partitioning consists of precipitation of proteins due to simultaneous presence of ammonium sulphate and t-butanol. The technique has been successfully used for purification and refolding of proteins. There are however indications that the structures of proteins subjected to three phase partitioning are different from native structure of proteins. Taking several proteins, the present work examines the structural changes in proteins by comparing their thermal stabilities, secondary structure contents, surface hydrophobicities, hydrodynamic radii and solubilities in the presence of ammonium sulphate. The results show that while the nature or extent of structural changes may vary, in all the cases the changes are rather subtle and not drastic in nature. Hence, the technique can be safely used for protein purification and refolding.
Rotating higher spin partition functions and extended BMS symmetries
Campoleoni, A.; Gonzalez, H.A. [Université Libre de Bruxelles and International Solvay Institutes,ULB-Campus Plaine CP231, 1050 Brussels (Belgium); Oblak, B. [Université Libre de Bruxelles and International Solvay Institutes,ULB-Campus Plaine CP231, 1050 Brussels (Belgium); DAMTP, Centre for Mathematical Sciences, University of Cambridge,Wilberforce Road, Cambridge CB3 0WA (United Kingdom); Riegler, M. [Institute for Theoretical Physics, Vienna University of Technology,Wiedner Hauptstrasse 8-10, A-1040 Vienna (Austria)
2016-04-06
We evaluate one-loop partition functions of higher-spin fields in thermal flat space with angular potentials; this computation is performed in arbitrary space-time dimension, and the result is a simple combination of Poincaré characters. We then focus on dimension three, showing that suitable products of one-loop partition functions coincide with vacuum characters of higher-spin asymptotic symmetry algebras at null infinity. These are extensions of the bms{sub 3} algebra that emerges in pure gravity, and we propose a way to build their unitary representations and to compute the associated characters. We also extend our investigations to supergravity and to a class of gauge theories involving higher-spin fermionic fields.
A general method to study equilibrium partitioning of macromolecules
The distribution of macromolecules between a confined microscopic solution and a macroscopic bulk solution plays an important role in understanding separation processes such as Size Exclusion Chromatography (SEC). In this study, we have developed an efficient computational algorithm for obtaining...... the equilibrium partition coefficient (pore-to-bulk concentration ratio) and the concentration profile inside the confining geometry. The algorithm involves two steps. First, certain characteristic structure properties of the studied macromolecule are obtained by sampling its configuration space, and second those...... data are used for the computation of partition coefficient and concentration profile for any confinement size. Our algorithm is versatile to the model and type of the macromolecule studied, and is capable of handling three types of confining geometries (slit, rectangular channel and rectangular box...
Paths of specified length in random k-partite graphs
C. R. Subramanian
2001-12-01
Full Text Available Fix positive integers k and l. Consider a random k-partite graph on n vertices obtained by partitioning the vertex set into V i, (i=1, …,k each having size Ω(n and choosing each possible edge with probability p. Consider any vertex x in any V i and any vertex y. We show that the expected number of simple paths of even length l between x and y differ significantly depending on whether y belongs to the same V i (as x does or not. A similar phenomenon occurs when l is odd. This result holds even when k,l vary slowly with n. This fact has implications to coloring random graphs. The proof is based on establishing bijections between sets of paths.
Partitioning based Approach for Load Balancing Public Cloud
T.V V S S C Divya
2016-05-01
Full Text Available Load Balancing Model Based on Cloud Partitioning for the Public Cloud environment has an important impact on the performance of network load. A cloud computing system which does not use load balancing has numerous drawbacks. Now-a-days the usage of internet and related resources has increased widely. Due to this there is tremendous increase in workload. So there is uneven distribution of this workload which results in server overloading and may crash. In such systems the resources are not optimally used. Due to this the performance degrades and efficiency reduces. Cloud computing efficient and improves user satisfaction. This project is a better load balance model for public cloud based on the cloud partitioning concept with a switch mechanism to choose different strategies for different situations. The algorithm applies the game theory for load balancing strategy to improve the efficiency in the public cloud environment
Potts model partition functions on two families of fractal lattices
Gong, Helin; Jin, Xian'an
2014-11-01
The partition function of q-state Potts model, or equivalently the Tutte polynomial, is computationally intractable for regular lattices. The purpose of this paper is to compute partition functions of q-state Potts model on two families of fractal lattices. Based on their self-similar structures and by applying the subgraph-decomposition method, we divide their Tutte polynomials into two summands, and for each summand we obtain a recursive formula involving the other summand. As a result, the number of spanning trees and their asymptotic growth constants, and a lower bound of the number of connected spanning subgraphs or acyclic root-connected orientations for each of such two lattices are obtained.